##maf version=1 scoring=roast.v3.3
a score=173036.000000
s hg38.chr14_KI270725v1_random         0 76 +    172810 GATCTGCTGTGGtagaaataattta-t--taaaaattctgtttacatttatcttatctcatcaattttagtaggtattt
s panTro4.chr3                 201672169 76 - 202329955 gatctgctgtggcagaaataattta-t--taaaaattctgtttacatttatcttatctcatcaattttagtaggtattt
i panTro4.chr3                 N 0 C 0
s ponAbe2.chr3                  69651681 76 + 202140232 gatctgctgtggtagaaataattta-t--taaaaattctgtttacatttatcttatctcatcaactttagtaggtattt
i ponAbe2.chr3                 N 0 C 0
s nomLeu3.chr21                 67579366 76 +  86207423 gatctgctgtggtagaaataattta-t--taaaaattctgtttacatttatcttatctcatctattttagtaggtattt
i nomLeu3.chr21                N 0 C 0
s macFas5.chr2                  60994257 78 - 192460366 GATCTGCTGTGGTAGAAATAATTTA-TAAAAAAAAATCTGTTTACATTTATCTTATCTCATCAATTTTAGTAGGTATTT
i macFas5.chr2                 N 0 C 0
s papAnu2.chr2                  59553873 79 + 187378091 GATCTGCTGTggtagaaataatttattaaaaaaaaatctgtttacatTTATCTTATCTCATCAATTTTagtaggtattt
i papAnu2.chr2                 N 0 C 0
s chlSab2.chr22                 64489871 77 - 101219884 GATCTGCTGTGGTAGAAATAATTTA-T-ACAAAAAGTCTGTTTACATTTATCTTATCTCATCAATTTTAGTAAGTATTT
i chlSab2.chr22                N 0 C 0
s calJac3.chr15                 46052054 76 -  98464013 GATCTGCTATGGTAGAAATAACTCA-T--TAaaaattctgtttacatttatcttatctcatcaattttactaggtattt
i calJac3.chr15                N 0 C 0

a score=3276.000000
s hg38.chr14_KI270725v1_random        76 1 +    172810 t
s panTro4.chr3                 201672245 1 - 202329955 t
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651757 1 + 202140232 t
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579442 1 +  86207423 t
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994335 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59553952 1 + 187378091 t
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64489948 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052130 1 -  98464013 t
i calJac3.chr15                C 0 C 0
s otoGar3.GL873534              11060256 1 +  30473821 T
i otoGar3.GL873534             N 0 I 127

a score=111179.000000
s hg38.chr14_KI270725v1_random        77 52 +    172810 tac----attatatattagaaaaattgtgtacatataaataaacaaatatagtact
s panTro4.chr3                 201672246 52 - 202329955 taa----attatatattagaaaaactgtgtacatataaataaacaaatatagtact
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651758 52 + 202140232 taa----attatatattagaaaaattgtgtacatataaataaacaaatatagtact
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579443 52 +  86207423 taa----attatatattagaaaaattgtgtacatataaataaacaaatatagtact
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994336 52 - 192460366 TAA----ATTATATATTAGAAAAATTGTGTACCTATAAATAAACAAATATAGTACT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59553953 52 + 187378091 taa----attatatattagaaaaattgtgtacctataaataaacaaatatagtaCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64489949 52 - 101219884 AAA----ATTATATATTAGAAAAATTGTGTACCtataaataaacaaatatagtact
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052131 52 -  98464013 aaactgtacattatattagaaaaattgtgtacat----ataaacatatatagtact
i calJac3.chr15                C 0 C 0
e otoGar3.GL873534              11060257 127 +  30473821 I

a score=3600.000000
s hg38.chr14_KI270725v1_random       129 1 +    172810 g
s panTro4.chr3                 201672298 1 - 202329955 g
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651810 1 + 202140232 g
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579495 1 +  86207423 g
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994388 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554005 1 + 187378091 G
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490001 1 - 101219884 g
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052183 1 -  98464013 g
i calJac3.chr15                C 0 C 0
s tarSyr2.KE939134v1              174371 1 +    958716 g
i tarSyr2.KE939134v1           N 0 I 74
e otoGar3.GL873534              11060257 127 +  30473821 I

a score=30724.000000
s hg38.chr14_KI270725v1_random       130 14 +    172810 aagtttacttgctc
s panTro4.chr3                 201672299 14 - 202329955 aagtttacttgctc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651811 14 + 202140232 aagtttacttgttc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579496 14 +  86207423 aagtttacttgctc
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994389 14 - 192460366 AAGTTTACTTGTTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554006 14 + 187378091 AAGTTTACTTGCTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490002 14 - 101219884 aagtttacttgctc
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052184 13 -  98464013 aa-tttacttactc
i calJac3.chr15                C 0 C 0
e tarSyr2.KE939134v1              174372 74 +    958716 I
e otoGar3.GL873534              11060257 127 +  30473821 I

a score=3276.000000
s hg38.chr14_KI270725v1_random       144 1 +    172810 a
s panTro4.chr3                 201672313 1 - 202329955 a
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651825 1 + 202140232 a
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579510 1 +  86207423 a
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994403 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554020 1 + 187378091 A
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490016 1 - 101219884 a
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052197 1 -  98464013 a
i calJac3.chr15                C 0 C 0
s saiBol1.JH378125              27723794 1 +  27742158 a
i saiBol1.JH378125             N 0 I 136
e tarSyr2.KE939134v1              174372 74 +    958716 I
e otoGar3.GL873534              11060257 127 +  30473821 I

a score=75831.000000
s hg38.chr14_KI270725v1_random       145 36 +    172810 -aatattattacttatagagatgtgcatccaaaaatg
s panTro4.chr3                 201672314 36 - 202329955 -aatattattgcttatagagatgtccatccaaaaatg
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651826 36 + 202140232 -aatgttatgacttatagagatgtgcatccaaaaatg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579511 36 +  86207423 -aatattattacttatagagatgtgcatccaaaaatg
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994404 35 - 192460366 -AATGTTATTACTTATAGAGATGTGCATCC-AAAATG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554021 35 + 187378091 -AATGTTATTACTTACAGAGATGTGCATCC-AAAATG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490017 35 - 101219884 -aatgttattacttatagagatgtgcatcc-aaaatg
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052198 37 -  98464013 aaatgttattacttatagacatgtgcatttaaaaatg
i calJac3.chr15                C 0 C 0
e saiBol1.JH378125              27723795 136 +  27742158 I
e tarSyr2.KE939134v1              174372 74 +    958716 I
e otoGar3.GL873534              11060257 127 +  30473821 I

a score=2300.000000
s hg38.chr14_KI270725v1_random       181 1 +    172810 t
s panTro4.chr3                 201672350 1 - 202329955 t
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651862 1 + 202140232 t
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579547 1 +  86207423 t
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994439 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554056 1 + 187378091 T
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490052 1 - 101219884 t
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052235 1 -  98464013 c
i calJac3.chr15                C 0 C 0
s micMur1.scaffold_1480            34817 1 -    329962 T
i micMur1.scaffold_1480        N 0 I 19199
e saiBol1.JH378125              27723795 136 +  27742158 I
e tarSyr2.KE939134v1              174372 74 +    958716 I
e otoGar3.GL873534              11060257 127 +  30473821 I

a score=46476.000000
s hg38.chr14_KI270725v1_random       182 21 +    172810 ttagaaactactgACAAACTA
s panTro4.chr3                 201672351 21 - 202329955 ttagaaactactgACAAACTA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651863 21 + 202140232 ttagaaactactgACAAACTA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579548 21 +  86207423 ttagaaactactgACAAACTA
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994440 21 - 192460366 TTAGAAACTACTTCCAAACTA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554057 21 + 187378091 TTAGAAACTACTTCCAAACTA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490053 21 - 101219884 ttagaaactactTCCAAACTA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052236 21 -  98464013 ttagaaactacCAACAAACTG
i calJac3.chr15                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27723795 136 +  27742158 I
e tarSyr2.KE939134v1              174372 74 +    958716 I
e otoGar3.GL873534              11060257 127 +  30473821 I

a score=2152.000000
s hg38.chr14_KI270725v1_random       203 1 +    172810 T
s panTro4.chr3                 201672372 1 - 202329955 T
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651884 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579569 1 +  86207423 T
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994461 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554078 1 + 187378091 T
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490074 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052257 1 -  98464013 T
i calJac3.chr15                C 0 C 0
s tarSyr2.KE939134v1              174446 1 +    958716 C
i tarSyr2.KE939134v1           I 74 I 4561
s otoGar3.GL873534              11060384 1 +  30473821 C
i otoGar3.GL873534             I 127 I 21041
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27723795 136 +  27742158 I

a score=174736.000000
s hg38.chr14_KI270725v1_random       204 76 +    172810 AAGT-AAATAACCTGTCAAAGAGTTCTCAGAATCCCTCTAAGATTGTAACTGAGTATGCCTGTAGCATAATCCTTAT
s panTro4.chr3                 201672373 76 - 202329955 AAGT-AAATAACCTATCAAAGAGTTCTCAGAATCCCTCTAAGATCGTAACTGAGTATGCCTGTAACATAATCCTTAT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651885 76 + 202140232 AAGT-AAATAACCTGTCAAAGAGTTCTCAGAATCCCTCTAAGATCATAACTGAGTATGCCTGTAGCATAATCCTTAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579570 76 +  86207423 AAGT-AAATAACCTGTCAAAGAGTTCTCAGAATCCCTCTAAGATCGTAACTGAGTATGCCTGTAGCATAATCCTTAT
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994462 76 - 192460366 AAGT-AAATAACCTGTCAAAGAGTTCTCAGAGTCCCTCTAAGACTGTAACTGAGTATGCCTGTAACACAATCCTTAT
i macFas5.chr2                 C 0 I 4
s papAnu2.chr2                  59554079 76 + 187378091 AAGT-AAATGACCTGTCAAAGAGTTCTCAGAATCCCTCTAAGACTGTAACTGAGTATGCCTGTAACACAATCcttat
i papAnu2.chr2                 C 0 I 4
s chlSab2.chr22                 64490075 76 - 101219884 AAGT-AAATAACCTGTCAAAGAGTTCTCAGAATCCCTCTAAGACTGTAACTGAGTATGCCTGTAACACAATCCTTAT
i chlSab2.chr22                C 0 I 4
s calJac3.chr15                 46052258 77 -  98464013 AAGTAAAATAATCCGTTGAAGAGTTCTCAGAATCCCTCTAAGCTCATAACTAAGTTGGCCTATAGCAGAATCCTTAT
i calJac3.chr15                C 0 I 4
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27723795 136 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=9828.000000
s hg38.chr14_KI270725v1_random       280 3 +    172810 TAA
s panTro4.chr3                 201672449 3 - 202329955 TAA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651961 3 + 202140232 TAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579646 3 +  86207423 TAA
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994542 3 - 192460366 TAA
i macFas5.chr2                 I 4 C 0
s papAnu2.chr2                  59554159 3 + 187378091 taa
i papAnu2.chr2                 I 4 C 0
s chlSab2.chr22                 64490155 3 - 101219884 TAA
i chlSab2.chr22                I 4 C 0
s calJac3.chr15                 46052339 3 -  98464013 TAA
i calJac3.chr15                I 4 C 0
s saiBol1.JH378125              27723931 3 +  27742158 TAA
i saiBol1.JH378125             I 136 I 375
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=64953.000000
s hg38.chr14_KI270725v1_random       283 28 +    172810 TTTTGCTAGAAAACTCAGTTATGTTCAA
s panTro4.chr3                 201672452 26 - 202329955 TTTTGCTAGAAAACT--GTTATGTTCAA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651964 28 + 202140232 TTTTGCTAGAAAACTCAGTTATGTTCAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579649 28 +  86207423 TTTTGCTAGAAAACTCAGTTATGTTCAA
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  60994545 28 - 192460366 TTTTGCTAGAAAACTCAGTTATGTTCAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554162 28 + 187378091 ttttgctaGAAAACTCAGTTATGttcaa
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490158 28 - 101219884 TTTTGCTAGAAAACTCAGTTATGTTCAA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052342 28 -  98464013 TTTTACTAGAAAACGCAGTTAAGTTCAA
i calJac3.chr15                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27723934 375 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=163270.000000
s hg38.chr14_KI270725v1_random       311 58 +    172810 ATATAAATAAATATACTT-ATGTTTAAATACAGATACATCAATAAATGCAATGACTGTC
s panTro4.chr3                 201672478 58 - 202329955 ATATAAATAAATATACTT-ATGTTTAAATACAGATACATCAATAAATGCAATGACTGTC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69651992 58 + 202140232 ATATAAATAAATATACTT-ATGTTTAAATACAGATACATCAATAAATGCAATTATTGTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579677 58 +  86207423 ATATAAATAAATATACTT-ATGTTTAAATACAGATACCTCAGTAAATGCAATGACTGTC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61838560 59 + 192599291 ATATAAATAAATATACTTAATGTTTAAATACAGATACATCGCTAAATGCGATGATTGTC
i rheMac3.chr2                 N 0 C 0
s macFas5.chr2                  60994573 59 - 192460366 ATATAAATAAATATACTTAATGTTTAAATACAGATACATCGCTAAATGCGATGATTGTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554190 59 + 187378091 atgtaaataaatatacttaatgTTTAAATACAGATACATCGCTAAATGCGATGATTgtc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490186 59 - 101219884 ATATAAATAAATATACTTAATGTTTAAATACTGATACATCGCTAAATGCGATGATTGTC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052370 58 -  98464013 ATATAAATAAATGTACTT-ATATTTAAATACAGATACATCACTAAATGTGATGATTCTC
i calJac3.chr15                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27723934 375 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=750080.000000
s hg38.chr14_KI270725v1_random       369 230 +    172810 ATTTCAT--TCCTTCGTAAAGCCTTTCAttctcatctcttccttctctttgctgatctt------cAAATTCTGAAGCTTCTTTAATGGGATTCCTGTTAGCAAGTTCTCTCCTTTCTGTGTCCTCCATACACAAATGTCTGT-GGTTTCTTGATAATTATATTCCATGAACATAT-----------TAATCATACCTTTGCTCCTAATTTTATATACAAGTTGGAATCCAGACTAAGC--------TTT--TTTATTT--A
s panTro4.chr3                 201672536 230 - 202329955 ATTTCAT--TCCTTCATAAAGCCTTTCACTCTCATCTCTTCCTTCTCTTTGCTGATTTT------CAAATTCTGAAGCTTCTTTAATGGGATTCCTGTTAGCAAGTTCTCTCCTTTCTGTGTCCTCCATACACAAATGTCTGT-GGTTTCTTGATAATTATATTCCATGAATATAT-----------TAATCATACCTTTGCTCCTAATTTTATATACAAGTTGGAATCCAGACTAAGC--------TTT--TTTATTT--A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69652050 230 + 202140232 ATTTCAT--TTCTTCATAAAGCCTTTCATTCTCATCTCTTCCTTCTCTTTGCTGATCTT------CAAATTCTGAAGCTTCTTTAATGGGATTCCTGTTAGCAAGTTCTCTCCTTTCTGTGTCCTCCATACACAAATGTCTGT-GGTCTCTTGATAACTATATTCCATGAACATAT-----------TAATCATACCTTTGCTCCTAATTTTATATACAAGTTGGAATCCAGACTAAGC--------TTT--TTTATTT--A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67579735 230 +  86207423 ATTTCAT--TCCTTTGTAAAGCCTTTCATTCTCATCGTTTCCTTCTCTTTGCTGATCTT------CAAATTCTGAAGCTTCTTTAATGGGATTCCTGTTAGCAAGTTCTCTCCTTTCTGTGTCCTCCATACACAGATGTCTGT-GGTTTCTTGACAATTATATTCCATGAAAATAT-----------TAATCATACCTTTATTCCCAATTTTATATACAAGCTGGAATCCAGACTAAGC--------TTT--TTTATTT--A
i nomLeu3.chr21                C 0 I 282
s rheMac3.chr2                  61838619 229 + 192599291 ATTTCAT--TCCTTTGTAAAGCCTTTCATTTTCATCTCTTCCTTCTCTTTGCTGATCTT------CAAATTCTGAAGCTTCTTTAATGGGATTCCTGTTAGCAAGTTCTCTCCTTTCTGTGTCCTCCATACACAGATGTCTGT-GGTTTCTTGATAATTCTATTCTATGAACATAT-----------TAATCATACTTTCGCTCCTAATTTTATATACAAGTTGGAATCCAGACTAAGC--------TTT--TTTATTT---
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60994632 229 - 192460366 ATTTCAT--TCCTTTGTAAAGCCTTTCATTTTCATCTCTTCCTTCTCTTTGCTGATCTT------CAAATTCTGAAGCTTCTTTAATGGGATTCCTGTTAGCAAGTTCTCTCCTTTCTGTGTCCTCCATACACAGATGTCTGT-GGTTTCTTGATAATTATATTCTATGAACATAT-----------TAATCATACCTTCGCTCCTAATTTTATATACAAGTTGGAATCCAGACTAAGC--------TTT--TTTATTT---
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554249 230 + 187378091 atttcat--tcctttgtaaagcctttcattttcatctcttccttctctttgctgATCTT------CAAATTCTGAAGCTTCTTTAATGGGATTCCTGTTAGCAAGTTCTCTCCTTTCTGTGTCCTCCATACACAGATGTCTGT-GGTTTCTTGATAATTATATTCTATGAACATAT-----------TAATCATACCTTCGCTCCTAATTTTATATACAAGTTGGAATGCAGACtaagct-------ttt--tttattt---
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490245 231 - 101219884 ATTTCAT--TCCTTCTTAAAGTCTTTCATTTTCATCTCTTCCTTCTCTTTGCTGATCTT------CAAATTCTGAAGCTTCTTTAATGGGATTCCTGTTAGCAAGTTCTCTCCTTTCTGTGTCCTCCATACACAGATGTCTGT-GGTTTCTTGATAATTATATTCCATGAACATAT-----------TAATCATACCTTTGCTCCTAATTTTATATACAAGTTGGAATCCAGACTAAGC--------TTA--TTTATTTAA-
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052428 234 -  98464013 GTTTCAT--TCCTTCGTAAAGCTGCTCATTCCCACCTCTTGCTTCTCTTTGCTGATCTT------CACATTCTGGAGCTTCTTTAATGTGACTGTTGTTAGCAAGTTCTCTCTTTTCTATGTTCTCCATGCACAAATGTTTGT-GCTCTCTTGATAATTATATTCCATGAACATAT-----------TAATCATACTTTTGCTCCTAATTTTATATACAAGTTGGAATCCAAACTAAGCTTTATAACTTT--TTTA------
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16598847 247 +  58134056 ATTTCATCATCCTTGATAAGGCCTCCCATACCCATCATTTCCTTATCTTTGCTATTTTTCTAGTCCACATCCCAAACATCCTGTAATGGGCTTCCAGTCAACAGATTCTGTCCTTTCCG-GTCCTCTGCACACAGAGGCTGGTGGGTTTATTAAGGAATATATTCCATGAATACATTCCATGAAAGGTACTCACTCCTTTACTTTTAATTT--TACACAAGTTAAAATCCAGGCTCAGC--------ATTGCTTTAAA----
i canFam3.chr20                N 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27723934 375 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=121203.000000
s hg38.chr14_KI270725v1_random       599 38 +    172810 AAAAAATTACAATCTCAAATCAATAAATGCTTCTGCCA------------------------
s panTro4.chr3                 201672766 38 - 202329955 AAAAAATTACAATCTCAAATCAATAAATGCTTCTGCCA------------------------
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69652280 38 + 202140232 AAAAAATTACAATCTCAAATCAATAAATGCTTCTGCCA------------------------
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67580247 38 +  86207423 AAAAAATTACAATCTCAAATCAATAAATGCTTCTGCCA------------------------
i nomLeu3.chr21                I 282 C 0
s rheMac3.chr2                  61838848 38 + 192599291 AAAAAATTACAATCTCAAATCAATAAATGCTTCTGCCA------------------------
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60994861 38 - 192460366 AAAAAATTACAATCTCAAATCAATAAATGCTTCTGCCA------------------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554479 38 + 187378091 taaaaattacaatctcaaatcaataaatgcttctgcca------------------------
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490476 38 - 101219884 AAAAAATCACAATCTCAAATCAATAAATGCTTCTGCCA------------------------
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052662 36 -  98464013 --AAAAACAGAATCTCAAATCAAAATATCCTTCTGCCA------------------------
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16599094 62 +  58134056 ACAAAGTTGTAATCTCCATTCAACAAATGCTTCTGTAAAAAAAAAAACAAATGCTTCTGTCA
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27723934 375 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=64575.000000
s hg38.chr14_KI270725v1_random       637 18 +    172810 TATTTTTCTCT--TTCATTT-
s panTro4.chr3                 201672804 20 - 202329955 TATTTTTCTCTCTTTCATTT-
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69652318 18 + 202140232 TATTTTTCTCT--TTCATTT-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67580285 20 +  86207423 TATTTTTCTCTCTTTCATTT-
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61838886 20 + 192599291 TATTTTTCTCTCTTCCATTT-
i rheMac3.chr2                 C 0 I 16
s macFas5.chr2                  60994899 20 - 192460366 TATTTTTCTCTCTTCCATTT-
i macFas5.chr2                 C 0 I 16
s papAnu2.chr2                  59554517 20 + 187378091 tatttttctttcttccattt-
i papAnu2.chr2                 C 0 I 16
s chlSab2.chr22                 64490514 20 - 101219884 TATTTTTCTCTCTTCCATTT-
i chlSab2.chr22                C 0 I 16
s calJac3.chr15                 46052698 20 -  98464013 TATTTTTCTCTCTTCCATTT-
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45768048 18 - 149736546 --TGTTTTTTTCCTTCATAA-
i mm10.chr6                    N 0 C 0
s canFam3.chr20                 16599156 21 +  58134056 CATTTTTCTCTCTCCCAGTTT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27723934 375 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=-2113.000000
s hg38.chr14_KI270725v1_random       655 3 +    172810 AAG-
s panTro4.chr3                 201672824 3 - 202329955 AAG-
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69652336 3 + 202140232 AAG-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67580305 3 +  86207423 AAT-
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61838922 3 + 192599291 CAG-
i rheMac3.chr2                 I 16 C 0
s macFas5.chr2                  60994935 3 - 192460366 CAG-
i macFas5.chr2                 I 16 C 0
s papAnu2.chr2                  59554553 3 + 187378091 CAG-
i papAnu2.chr2                 I 16 C 0
s chlSab2.chr22                 64490550 3 - 101219884 CAG-
i chlSab2.chr22                I 16 C 0
s calJac3.chr15                 46052718 3 -  98464013 TAG-
i calJac3.chr15                C 0 I 16
s saiBol1.JH378125              27724309 3 +  27742158 TAG-
i saiBol1.JH378125             I 375 I 240
s mm10.chr6                     45768066 1 - 149736546 -A--
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16599177 3 +  58134056 -AGG
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=732184.000000
s hg38.chr14_KI270725v1_random       658 234 +    172810 ---------------CATATTGCTATAATTA------------CACTTACTGTTCTTTTCTCA------CTAATTTATCACTCTTCTTCTTC---CT---TTCTTTATTATCCATGTAAATTTTAACCTTTCTAAGATAAACTGA----------TTTGTTTTTTTGCCGT-GTAGTAAATGATCCTCCTACTTCTAGTCAAATTCTC--------------------------------------------------CACAGCATCTATCAGAGTCTAGTTGTTACTAAACAATGG------------TTGCAGTTTTGTGCTGTGG-TGACTTACCAGAAAGAAC
s panTro4.chr3                 201672827 237 - 202329955 ---------------CATATTGCTATAATTA------------CACCTACTGTTCTTTTCTCA------CTAATTTATCACTCTTCTTCTTCTTCCT---TTCTTTATTATCCATGTAAATTTTAACCTTTCTAAGACAGACTGA----------TTTGTTTTTTTGCCAT-GTAGTAAATGATCCTCCTACTTCTAGTCAAATTCTC--------------------------------------------------CACAACATCTATCAGAGTCTAGTTGTTACTAAACAATGG------------TTGCAGTTTTGTGCTGTGG-TGACTTACCAGAAAGAAC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69652339 233 + 202140232 ---------------CATATTGCTATAATTA------------CAGTTACTGTTATTTTCTCA------CTAATTTATCACTCTTCTTCTTCTTCCT---TTCTTTATTATCCGTGTAAATTTTAACCTTTCTAAGACAGA-TGA----------TTTGTTTTTTTGCCAT-GTAGTAAATGATCCTCTTACTTGTAGTCAAATTCTC--------------------------------------------------CACAGCATCTATCAGAGTCTA---GTTACAAAACAATCG------------TTGCAGTTTTGTGCTGTGG-TGACTTACCAGAAAGAAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67580308 229 +  86207423 ---------------CATACTGCTATAATTA------------TACTTACTGTTATTTTCTCA------CTAATTTATCACTCTTCTTCTTC---CT---TTCTTTATTATCCATGGAAATTTTAACCTTTCTAAGATAGACTGA----------TT--TTTTTTGGCCAC-ATACTAAATGATCCTCCTACTTCTAGTCAAATTCTC--------------------------------------------------CACAGCATCTATCAGAATCTA---GTTACTAAACAATTG------------TTGCAGTTTTGTGTTGTGG-TGACTTACCAGAAAGAAC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61838925 233 + 192599291 ---------------CGTATTGCTATAATTA------------CACTTACTGTTATTTTCTCA------CTAATTTATCACTCACCTTCTTCTTCCT---TTCTTTATTATCCGTGTAAATTTTAACCTTTCTAAGACAGACTGA----------TTTGTTTTTTTGCCAT-GTAGTAAAAGATCCTCCTACATCTAGTCAAATTCCC--------------------------------------------------CACAGCATCTATCAGAGTCTA---G-TACTAAACAATTG------------TTGCAGTTTTGTGCTGTGG-TGACTTACCAGAAAGAAC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60994938 233 - 192460366 ---------------CGTATTGCTATAATTA------------CACTTACTGTTATTTTCTCA------CTAATTTATCACTCACCTTCTTCTTCCT---TTCTTTATTATCCGTGTAAATTTTAACCTTTCTAAGACAGACTGA----------TTTGTTTTTTTGCCAT-GTAGTAAAAGATCCTCCTACATCTAGTCAAATTCCC--------------------------------------------------CACAGCATCTATCAGAGTCTA---G-TACTAAACAATTG------------TTGCAGTTTTGTGCTGTGG-TGACTTACCAGAAAGAAC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554556 233 + 187378091 ---------------CTTATTGCTATAATTA------------CGCTTACCGTTACTTTCTCA------CTAATTTATCACtcaccttcttcttcct---ttctttattatcCGTGTAAATTTTAACCTTTCTAAGACAGACTGA----------TTTGGTTTCTTGCCAT-GTAGTAAAAGATCCTCCTACGTCTAGTCAAATTCCC--------------------------------------------------CACAGCATCTATCAGAGTCTA---G-TACTAAACAATTG------------TTGCAGTTTTGTGCTGTGG-TGACTTACCAGAAAGAAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490553 243 - 101219884 ---------------CGTATTGCTATAATTA------------TACTTACTGTTATTTTCTCA------CTAATTTATCACTCATCTTCTTCTTCCT---TTCTTTATTATCCGTGTAAATTTTAACCTTTCTAAGATAGACTGAtttttttttttttttttttttGCTGT-GTAGTAAAAGATCCTCCTACGTCTAGTCAAATTCCC--------------------------------------------------CACAGCATCTATCAGAGTCTA---G-TACTAAACAATTG------------TTGCAGTTTTGTGCTGTGG-TGACTTACCAGAAAGAAC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052737 228 -  98464013 ---------------CATATTGATACAATGA------------TCCTTACTGTTGTTTTCTTA------CTAATTTATCACTCATCTTCTTCTTTCT---TTC-TTATTATCCATGTAAATTTTATCCTTTCTAAGATAGATTGG----------TT--ATTTTTCAC--T-GTAGTAAAAGATCCTTCTACTTCTAGTAAAGTTCTC--------------------------------------------------CACAGCATCTATCAGAGTGTA---A-TACTAAACAGTAA------------TTGCAGTTTTGTGCTGTGG-CGACTCACCATAAAGAAC
i calJac3.chr15                I 16 C 0
s mm10.chr6                     45768067 277 - 149736546 -----------------------------TC------------CCCTCAC-ATTATTTTCTGGTCCAGTCTCATTTATAGTACATCTTCCTCAT-CT---TCATTTATTAACCATGTAAATTTTAACCTTTCTGA-ACAGGCCAA----------TT---CTTTCTG-----GTGGTAAAAG-CCTTCTTATTCCTACTTGAGttttcttttcttttttttttttttcttttttttttttttttttttttttttttttCACAGCATCAACCAGAGAGCA---G-TACTAGGTAAGGGCTCTATAAATATTTGCAGGTTTGCGCTGTGGTTGACCTACCATAAAGAAC
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16599180 270 +  58134056 CATCCCTGTTTGCAATGTATTCATATAATGATCCTCTAAATATTCCTTACTGTTTTATACTTC------CTACTTTATCATTCATCTTCTCCTTCCTCCCCTCTTTATTATCCATGTAAATTCTAACC--TCTAAACTAGACAGG----------GT--ACCCCCCGCCCCGGGAATAAAGGACCC---TACTCATATTTGAATTCTC--------------------------------------------------CATAGCTTCTATCAGAGTATA---T-TATTAAACAAAGACTCAGTAAATATTTGCAGCTTTGTGCTGTGGCTGCTTTGCCATAAGAAAC
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27724312 240 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=2739.000000
s hg38.chr14_KI270725v1_random       892 1 +    172810 G
s panTro4.chr3                 201673064 1 - 202329955 G
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69652572 1 + 202140232 G
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67580537 1 +  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61839158 1 + 192599291 A
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60995171 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554789 1 + 187378091 A
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490796 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052965 1 -  98464013 A
i calJac3.chr15                C 0 C 0
s saiBol1.JH378125              27724552 1 +  27742158 A
i saiBol1.JH378125             I 240 I 688
s mm10.chr6                     45768344 1 - 149736546 A
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16599450 1 +  58134056 A
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1693671.000000
s hg38.chr14_KI270725v1_random       893 498 +    172810 ATGATT-CCTAGTGAAGTTCATCACTCCCAGTGCATGAGGTAAGAGTT-ACATTTCAGCAAATGTGGACCTAAAAACAAAAGGTGAACCACTTCATCAGATGCTTAATAATAAAATTCAATGCAATTTGCTCACAGAT-GTACTTTTTCAGCTA-----------------AACTGGGTCTCAGGATCCACATGTAGTTCCTCAGCGCTGTAGCGCAGCTCTGATT-T-GTGCACA-----------------------TATGTGCTCACGTTAACAACATCATACTTTGGAGGTACTT---AACATAAAAGAGGAAATAGTTCTTTAGAAGATAAAACTCTCAGTGTAGGACATCTGATTTTTAAT-ATTTTCTTTTCTTGTTAAGTCCTAAAACCATCAAATGATTGCAGTTCTCAA------------------------TTTGCTTATAGTGAGGCTAGAAGATGATAT---GAGGTCTAAGCAATATTCTTAAAGGAAATTTGGACCTCTGCTACATTACAT--CATGCTCACACATCACTTTAGGAAAAGTTAAAAGAGTTATAACAAAA----
s panTro4.chr3                 201673065 496 - 202329955 ATGATTTCCTAGTGAAGTTCATCACTCCCAGTGCGTGAGGTAAGAGTT-ACATTTCAGCAAATGTGGACCTAAAAACAAAAGGTGAACCACTTCATCAGATGCTTAATAATAAAATTCAATGCCATTTGCTCACAGAT-GTACTTCTTCAGCTA-----------------AACTTGGTCTCAGGATCCACATGTAGTTTCTCAGCGCTGTCGCGCAGCTCTGATT-T-GTGCACA-----------------------TATGTGTTCACGTTAACA---TCATACTTTGGAGGTACTT---AACATAAAAGACGAAATAGTTCTTTAGAAGATAAAACTCTCAGTGTAGGACATCTGATTTTTAAT-ATTTTCTTTTCTAGTTAAGTCCTAAAACCATCAAATGACTGCAGTTCTCAA------------------------TTTGCTTATAGTGAGGCTAGAAGATGATAT---GAGGTCTAAGCAATATTCTTAAAGGAAATTTGGACCTCTGCTACATTACAT--CATGCTCACACATCACTTTAGGAAAAGTTAAAAGAGTTATAACAAAA----
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69652573 499 + 202140232 ATGATTTCCTAGTGAAGTTCATCACTTCCAGTGCATGAGATAAGAGTT-ACATTTCAGCAAATGTGGACCTAAAAACAAAAGGTGAACCACTTCATCAGATGTTTAACAATACAATTCAATGCCATTTGCTCACAGAT-GTACTTTTTCAGCTA-----------------AACTGGGTCTCAGGATCCACATGTAGTTTCTCAGCGCTGTGGCGCAGCTCTGATT-T-GTGCACA-----------------------TATGTGTTCACGTTAACAACATCATACTTTGGAGGTACTT---AACATAAAAGATGAAATAGTTCTTTAGAAGATAAAACTCTCAGTGTAGGACATCTGATTTTTAAT-ATTTTCTTTTCTAGTTAAGTCCTAAAACCATCAAATGATTGCAGTTCTCAA------------------------TTTGCTTATAGTGAAGCTAGAAGATGATAT---AAGGTCTAAGCAATATTCTTAAAGGAAATTTGGACCTCTGCTACATTACAT--CATGCTCACACATCACTTTAGGAAAAGTTAAAAGAGTTACAACAAAA----
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67580538 498 +  86207423 ATGATTTCCTAGTGAAGTTCATCACTCCCAGTGCATGAGATAAGAGTT-ATGTTTCAGCAAATGCAGACCTAAAAACAAAAGGTGAACCACTTCATCAGATGCTTAACAATAAAATTCAGTGCCATTTGCTCACAGAT-GTACTTTTTCAGCTA-----------------AACTGGGTCTCAGGATCCACATGTAGTTTCTCAGCGCTGCAGCGCAGCTCTGATT-T-GTGCACA-----------------------TATGTGTTCACTTTAACAACATCATGCTTTGGAGGTACTT---AACATAAAAGATGAAATAGTTCTTTAGAAGATAAAACACTCAGTGTAGGACATCTGATTTTTAAT-ATTTTCTTTTCTTGTTAAGTCCTAAAACCATCAAATGATTGCAGTTCTCAA------------------------TTCACTTATAGTGAGGCTAGAAAATGATAT---GAGGTCTCAGCAATATTCTTAAAGGAAATTTGGACCTCTGCTACATTACAT--CATGCTCACACATCACTTT-GGGAAAGTTAAAAGAGTTATAACAGAA----
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61839159 502 + 192599291 ACGATTTCCTAGTGAAGTTCATCACTCCCAGTGCATGAGATAAGAGTTAACGTTTCAGCAAATGTGGGCCTAAAAACAAAAGGTGAACCACTTCATCAGATGCTTAACAATAAAATTCAATGCCTTTTGCTCACAGAT-ACACTTTTTCAGCTA-----------------AACTAGGTCTCGGGATCCACATGCAGTTTCTCAGCGCTGTAGCGCAGCTCTGACT-T-GTGCACA-----------------------TATGTGTTCACTGTAACAACATCATACTTTGGAGGTACTT---AACATAAAAGATGAAATAGTTCTTTAGAAGATAAAACTCCCAAGGTAAGGCATCTGATTTTTAAT-ATTTTCTTTTCTTGTTAAGTTCTAAAACCATCAAATGATTGCAGTTCTCAA------------------------TTCGTTTACAGTGAGGCTAGAAGATGATGT---GAGGTCTAAGTAATATTCTTAAAGGAAATTTGGACTTCTGCTACATTGCATACCATGCTCACACATCTCTTTAGGAAAGGTTAAAGGAGTTATAACAAAA----
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60995172 502 - 192460366 ACGATTTCCTAGTGAAGTTCATCACTCCCAGTGCATGAGATAAGAGTTAACATTTCAGCAAATGTGGGCCTAAAAACAAAAGGTGAACCACTTCATCAGATGCTTAACAATAAAATTCAATGCCTTTTGCTCACAGAT-ACACTTTTTCAGCTA-----------------AACTAGGTCTCAGGATCCACATGCAGTTTCTCAGCGCTGTAGCGCAGCTCTGACT-T-GTGCACA-----------------------TATGTGTTCACTGTAACAACATCATACTTTGGAGGTACTT---AACATAAAAGATGAAATAGTTCTTTAGAAGATAAAACTCCCAAGGTAAGGCATCTGATTTTTAAT-ATTTTCTTTTCTTGTTAAGTTCTAAAACCATCAAATGATTGCAGTTCTCAA------------------------TTCGTTTACAGTGAGGCTAGAAGATGATGT---GAGGTCTAAGTAATATTCTTAAAGGAAATTTGGACTTCTGCTACATTGCATACCATGCTCACACATCTCTTTAGGAAAGGTTAAAGGAGTTATAACAAAA----
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59554790 502 + 187378091 ACGATTTCCTAGTGAAGTTCATTACTCCCAGTGCATGAGATAAGAGTTAACGTTTCAGCAAATGTGGGCCTAAAAACAAAAGGTGAACCACTTCATCAGATGCTTAACAATAAAATTCAATGCCTTTTGCTCACAGAT-ACACTTTTTCAGCTA-----------------AACTAGGTCTCAGGATCCACATGCAGTTTCTCAGCGCTGTAGCGCAGCTCTGACT-T-GTGCACA-----------------------TATGTGTTCACTGTAACAACATCATACTTTGGAGGTACTT---AACATAAAAGATGAAATAGTTCTTTAGAAGATAAAACTCCCAAGGTAAGGcatctgatttttaat-attttcttttcttgttaagTTCTAAAACCATCAAATGATTGCAATTCTCAA------------------------TTCGTTTACAGTGAGGCTAGAAGATGATGT---GAGGTCTAAATAATATTCTTAAAGGAAATTTGGACTTCTGCTACATTGCATACCATGCTCACACATCTCTTTAGGAAAGGTTAAAAGAGTTATAGCaaaa----
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64490797 502 - 101219884 ACGATTTCCTAGTGAAGTTCATTATTCCCAGTGCATGAGATAAGAGTTAACGTTTCAGCAAATGTGGACCTAAAAACAAAAGGTGAACCACTTCATCAGATGCTTAACAATAAAATTCGATGCCATTTGCTCACAGAT-ATACTTTTTCAGCTA-----------------AACTAGGTCTCAGGATCCACATGCAGTTTCTCAGCGTTGTAGCAGAGTTCTGACT-T-GTGCACA-----------------------TACGTGTTCACTTTAACAACATCATACTTTGGAGGTACTT---AACATAAAAGATGAAATAGTTCTTTAGAAGATAAAACTCCCAAGGTAAGATACCTGATTTTTAAT-ATTTTCTTTTCTTGTTAAGTTCTAAAACCATCAAATGATTGCAGTTCTCAA------------------------TTTGCTTACAGTGAGGCTAGAAGATGATAT---GAGGTCTAAGCAATATTATTAAAGGAAATTTGGACTTCTGCCACATTGCATACCATGCTCACACATCTCTTTAGGAAAAGTTAAAAGAGTTATAACAAAA----
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46052966 449 -  98464013 ATGATTTCCTAGTGAAGTTCCTTACTCCCAGTGCATGAGATAAGAGTT-ACGTTTCAGCAATTGTGGA-CTAAAAACAAAAGGTGAAACACTTCATCAGATGTTTCACAA----------------------------------------------------------------------TCAGGATCCACATATAGTTTCGCAGTGCTGTATCAGAGCTCTGATT-T-GTGCACA-----------------------TATTTGTTCACTTTAACAACATCATACTTTGGAGGTACTT---AACATAAAAAATGAAATATTTCTTTAGAAGATAAAATGCTTGATGTAGGACATCTGATTTTCAGTAATTTTCTTTTCTTGTTAAGTCCTCAAACCATCAAATGATTGCAGTTCTCAC------------------------TTTGATTATGGTAAGTCTAGAAGATGATGT---GAGGTCTAAGCAATATTTTTAAAGAAAATTTCGGCCTCTGTTACCTTACATATGATGCTCACACATCTCTTTAGGAAAAGTTAAAAGAGTTATAACAAAA----
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45768345 514 - 149736546 ATGATTTCCTAAGGAAATTCACTGCTCCCAGTGCATGAGGCAAGAGCT-AGATTTTAGCAACTGTGTACCTAAAACTAAAGAGCAAACAACTTCATGGGAAGCTGAACAATAAAACTGAAAGGCATTTTTATTGAGATCTTATTTGTTCAGCTAAGCTGAGGTCCTGGTTTAACTGGGCCCCAGAATCCAAATATAGTTTTATA--GTTGTAACACTGCTTGGGTT-CAGAGCACATTGCTAGTCAGGATGCAATACATTATTTTTTTACTGAAACAGACTCATTCATAGG-GATGGTT---AATGT-TCAGATGTATCAGTCCCCTACAAGATTAGAATATCAGTTCAGGATA-------TTTAAT-G------TTTCTCTTTAAATCTTAACATTAGCAAATGGCTATATTTTTCAA------------------------TTTTCCATGAATTAAG---GAAGATATTCTAGGAAGTTATTACCAATATCCTTAAA--------TGTTCATTACTGTATTACTAGCCATGTT----CATTGTTTTAGAAAAACAGAAGAGATTTATTGCAAAA----
i mm10.chr6                    C 0 I 410
s canFam3.chr20                 16599451 547 +  58134056 ACGGTTTCCTAGTGACATTCACTGCTCCTACTGCCTGAGGTAAGAAAC-ACATTTTAGCAATTGTGGACCTAAAAAGGAGAGGTAAACGACTTCATCAGAAACCTAACAACAAAATTGAATGCCACTTAGTCACGGTC-TTACTTTTTCAGCTA-----------------ATCCAGGTCTTAGGAGTCACAGGCAGTTT--TAACACTATGTTGCAACTCTGGTTCT-GTGTACACTAAATAAGAGGAAATAATATCAGACGCGTTCACTTTAACAATACCATACTTTGGAGGTAATTAACAACATAAATAATGAATTAGCTGTTTAGGAGAGTAGAAGCTCAATCTAGG---TCTGATTTTTAAT-ATTT---TTTCTCTATAA-TCCTAAAATGATCAAATGATTTTACTATTCAAATTTTAAGATTAAAACTAATACATTATGCCTATAATGAGAGCAGAAGACACTGG---GAGGTCTTAGCAATATGCTTAAAGAAAATGTTGGCCTTTACTACATTATTTACCATGCTCATATATCCTTTCAGTAAAATTTAAGAGAACTATAATAAAGAATA
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27724553 688 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=801855.000000
s hg38.chr14_KI270725v1_random      1391 237 +    172810 ATATTTTATA----CTTTGA-----TAAACATAAATTTTCAGAACTGAATTATAACTATTGCATTCCAAATGAATTTTCTGTATACATTACTGATTTTAACACCAAGGT--CATG-----GTCAT-----TTTAATGAAAA--TAAGTAAATAAATAAACACTAGC-------AG-A-AAAATATGGTCAG-AAAAAAGGAGAAT-AAAACCTGCATCTGAATTTCAGTTGATAATGGGCTATTTAATAACTACCAGTACACAGCTCTGCA
s panTro4.chr3                 201673561 237 - 202329955 ATATTTTATA----CTTTGA-----TAAACATAAATTTTCAGAACTGAATTATAACTATTGCATTCCAAATGAATTTTCTGTATACATTACTGATTTTAACACCAAGGT--CATG-----GTCAT-----TTTAATGAAAA--TAAGTAAATAAATAAACACTAGC-------AG-A-AAAATATGGTCAG-AAAAAAGGAGAAT-AAAATCTGCATCTGAATTTCAGTTGATAATGGGCTATTTAATAACTACCAGTACACAGCTCTGCA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653072 237 + 202140232 ACATTTTATA----CTTTGA-----TAAACATAAATTTTCAGAACTGAATTATAACTATTCTATTCCAAATGAATTTTCTGTATACATTACTGATTTTAACACCAAGGT--CATG-----GTCAT-----TTTAATGAAAA--TAAGTAAATAAATAAACACTAGC-------AG-A-AAAATATAGTCAG-AAAAAAGGAGAAT-AAAACCTGCATCTGAATTTCAGTTGATAATGGGCTATTTAATAACTACCAGTACACAGCTCTGCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67581036 237 +  86207423 ATATTTTATA----CTTTGA-----TAAACATAAATTTTCAGAACTGAATTATAGCTATCGCATTCCAAATGAATTTTCTGTATACATTACTGATTTTAACACCAAGGT--CATG-----GTCAT-----TTTAATGAAAA--TAAGTAAATAAATAAACACTAGC-------AG-A-AAAATATAGTCAG-AAAAAAGGAGAAT-AAAACCTGCATCCAAATTTCAGTTGATAATGGGCTATTTAATAACTATCAATACACAGCTCTGCA
i nomLeu3.chr21                C 0 I 2167
s rheMac3.chr2                  61839661 239 + 192599291 AAATTTTATA----GTTTAA-----CAAACATACATTTTCAGAACTGAATTGTAACTATTGCATTCCAAATGAATTTTCTGTATGCATTACTGATTTTAACTCTAAGGT--CATG-----GTCAT-----TTTGATGAAAA--TAAGTAAATAAATAAGCATTAGC-------AG-A-AAAATATGGTCAGAAAAAAAGGAGAATAAAAATCTGCGTCTGAATTTCAGTTGATAATGGGCTATTTAATAACTATCAGTACACAGCTCTGCA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60995674 239 - 192460366 AAATTTTATA----GTTTAA-----CAAACATACATTTTCAGAACTGAATTGTAACTATTGCATTCCAAATGAATTTTCTGTATGCATTACTGATTTTAACTCTAAGGT--CATG-----GTCAT-----TTTGATGAAAA--TAAGTAAATAAATAAGCATTAGC-------AG-A-AAAATATGGTCAGAAAAAAAGGAGAATAAAAACCTGCGTCTGAATTTCAGTTGATAATGGGCTATTTAATAACTATCAGTACATAGCTCTGCA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59555292 239 + 187378091 aaattttata----ctttaa-----caAACATACATTTTCAGAACTGAATTGTAACTATTGCATTCCAAATGAATTTTCTGTATACATTACTGATTTTAACTCTAAGGT--CATG-----GTCAT-----TTtgatgaaaa--taagtaaataaataagcattagc-------ag-a-aaaatatggtcagaaaaaaaggagaataaaaaccTGCGTCTGAATTTCAGTTGATAATGGGCTATTTAATAACTATCAGTACACAGCTCTGCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64491299 239 - 101219884 AAATTTTATA----CTTTAA-----TAAACATATATTTTCAGAACTGAATTGTAACTATTGCATTCTGAACGAATTTTCTGTATACATTACTGATTTTAGCACCAAGGT--CATG-----GTCAT-----TTTGATGAAAA--TAAGTAAATAAATAAACATTAGC-------AGAA-AAAATATGGTCAGAAAAAAAGGAGAAT-AAAACCTGCATCTGAATTTCAGTTGATAATGGGCGATTTAATAACTATCAGTACACAGCTCTGCA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46053415 236 -  98464013 ATATTTTATA----CTTTAA-----TAAACATAAATTTGTAGCACTTAATCGTAACTATGGCATTCCAAATGAATTTTCTGTATATATCACTGATTCTAACATAAAGAT--CATG-----GTCAT-----ATTGATGAAAA--TAAGTAAATAAATAAATACTAGC-------AG-A-AAAATATAGTCAG--AAAAAGGAGAAT-AAAACCTCCCTCTGAATTTCAGTTGATAATGGGCTATTTAATAACTATCAGTACACAGCTCTGCA
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45769269 233 - 149736546 ATTTGTTCTT----CTTTGAT--TTTAAACATAACCTTTCAGAATTGAG-------AATCAGATGGTAAATAAATAGTATTTGT--ATCATTGACTTTCGAACCAAAGTAACATGTAACAGTCATGTTCCATTCATGAAAAC-TAACAAAAGAAAGAAAAAGGAGC-------AG-AGAAAACGCTGTTGA-GAACAGTGAGG---AAAACCTTCAATTAAATTTAAGTTGGTTGTG-------TAACGCCTGCCAGCG---AGTTTTGTG
i mm10.chr6                    I 410 I 1
s canFam3.chr20                 16599998 253 +  58134056 ATATTTTACATGTTCTTTATTAATTTAAACATAAATTTTCAGAACTCAATTATACCTATAGCATTCCAAATGAATTTTCTGTGTATGTCATTAATTTTAACACCAAGGC--ACTG-----ATCAT-----TTTGacacacacacacacacacacacaAAAGTTAATAAATTTAAG-A-GAAATCTAGTCA--AGGAAAAAAGAAC-AGAGCCTGCAATTAAATTTTAGTTGATAATGGGCTATTTAATAACTAT-GTTATGCAGCTATGCA
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27724553 688 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1602.000000
s hg38.chr14_KI270725v1_random      1628 3 +    172810 GGG--
s panTro4.chr3                 201673798 3 - 202329955 GGG--
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653309 3 + 202140232 GGG--
i ponAbe2.chr3                 C 0 I 1
s rheMac3.chr2                  61839900 3 + 192599291 GGG--
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  60995913 3 - 192460366 GGG--
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59555531 3 + 187378091 GGG--
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64491538 3 - 101219884 GGG--
i chlSab2.chr22                C 0 I 1
s calJac3.chr15                 46053651 3 -  98464013 GGG--
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45769503 2 - 149736546 AG---
i mm10.chr6                    I 1 C 0
s canFam3.chr20                 16600251 3 +  58134056 --GAT
i canFam3.chr20                C 0 I 1
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27724553 688 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e nomLeu3.chr21                 67581273 2167 +  86207423 I

a score=3785.000000
s hg38.chr14_KI270725v1_random      1631 1 +    172810 A
s panTro4.chr3                 201673801 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653313 1 + 202140232 A
i ponAbe2.chr3                 I 1 C 0
s rheMac3.chr2                  61839904 1 + 192599291 A
i rheMac3.chr2                 I 1 C 0
s macFas5.chr2                  60995917 1 - 192460366 A
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59555535 1 + 187378091 A
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64491542 1 - 101219884 A
i chlSab2.chr22                I 1 C 0
s calJac3.chr15                 46053654 1 -  98464013 A
i calJac3.chr15                C 0 I 1
s saiBol1.JH378125              27725241 1 +  27742158 A
i saiBol1.JH378125             I 688 I 583
s mm10.chr6                     45769505 1 - 149736546 G
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16600255 1 +  58134056 A
i canFam3.chr20                I 1 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e nomLeu3.chr21                 67581273 2167 +  86207423 I

a score=1074513.000000
s hg38.chr14_KI270725v1_random      1632 324 +    172810 AAAAGGCAATAATTCATGTTAGGTATATCCAGTAACTAATGATAATCAACATGCTTTAAGGAAAATGAAGATAATATTTCTTTATGGAAAAGAGGTAAACGAACTTCTTTATATAATATGTTTAAAATTC------------------------------------------TCTTTTTAGTATTCAGATTTTAATGAACTGCAGATCACTGCAATTCTTCATGTTAAATCACATCTGGGATTGTTCCTTAATCAAGTAAATTGGGTTAAAATATTGCATTTTTATTGTTAGCTTAATAGCTTAAAGAGA-----TATTAAACATTTAATTATTAACCTTGACATGAAAGAATTGGAGAGATTTCTTAGAT
s panTro4.chr3                 201673802 324 - 202329955 AAAAGGCAATAATTCATGTTAGGTATATCCAGTACCTAATGATAATTAACATGCTTTAAGGAAAATGAAGATAATATTTCTTTATGGAAAAGAGGTAAACGAACTTCTTTACATAATATGTTTAAAATTC------------------------------------------TCTTTTTAGTATTCAGATTTTAATGAACTGCAGATCACTGCAATTCTTCATGTTAAATCGCATCTGGGATTGTTCCTTAATCGAGTAAATTGGGTTAAAATATTGCATTTTTATTGCTAGCTTAATAGCTTAAAGAGA-----TATTAAACGTTTAATTATTAACCTTGACATGAAAGAATTGGAGAGATTTCTTAGAT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653314 318 + 202140232 AAAAGGCAATAATTCATGATAGGTATATCCAGTACCTAATGATAATCAACATGCTTTAAGGAAAATGAAGATAATATTTCTTTATGGAAAAGAGGTAAACGAACTTCTTTACATAATATGTTTAAAATTC------------------------------------------TCTTT------TTCAGATTTTAATGAACTGCAGATCACTGCAATTCTTCATGTTAAATCACATCTGGGATTGTTCCTTAATCGAGTAAATTGGGTTAAAATATTGCATTTTTATTGCTAGCTTAATAGCTTAAAGAGA-----TATTAAACATTTAATTATTAACCTTGACATGAAAGAATTGGAGAGATTTCTTAGAT
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                  61839905 341 + 192599291 AAAAGGCAATAATTCATGTTAGGTGTACCCAGCACCTAATGATAATCAACATGCTTTAAGGAAAATGAAGATAATATTTCTTTATGGAAAAGAGGTAAA------------------------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAGGATTCAGATTTTAATGAAATTCAGATCACTGCAATTCTTCATGTTAAATCACATCTGAGATTGTTCCTTAATCGAGTAAATTGGGTTAAAATATTGCATTTTTATTGCTAGCTTAATAGCTTAAAGAGGAAAAATATTAAACATTTAATTATTAACCTTGACATGGAAGAATTGGAGAGATTTCTTAGAT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60995918 324 - 192460366 AAAAGGCAATAATTCATGTTAGGTGTACCCAGCACCTAATGATAATCAACATGCTTTAAGGAAAATGAAGATAATATTTCTTTATGGAAAAGAGGTAAACGAACTTCTTTACATAATATGTTTAAAATTC------------------------------------------TCTTTCCAGGATTCAGATTTTAATGAAATTCAGATCACTGCAATTCTTCATGTTAAATCACATCTGAGATTGTTCCTTAATCGAGTAAATTGGGTTAAAATATTGCATTTTTATTGCTAGCTTAATAGCTTAAAGAGG-----TATTAAACATTTAATTATTAACCTTGACATGGAAGAATTGGAGAGATTTCTTAGAT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59555536 323 + 187378091 AAAAGGCAATAATTCATGTTAGGTGTACCCAGCACCTAATGATAATCAACATGCTTtaaggaaaatgaagataatagttCTTTATGGAAAAGAGGTAAATGAACTTCttta-ataatatgtttaaaattc------------------------------------------tctttccaGGATTCAGATTTTAATGAAATTCCGATCACTGCAATTCTTCATGTTAAATCACATCTGAGATTGTTCCTTAATCGAGTAAATTGggttaaaatattgcatttttattgCTAGCTTAATAGCTTAAAGAgg-----tattaaacatttaattattaaCCTTGACATGGAAGAATTCGAGAGATTTCTTAGAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64491543 324 - 101219884 AAAAGGCAATAATTCATGTCAGGTGTACCCAGCACCTAATGATAATCAACATGCTTTAAGGAAAATGAAGATAACATTTCTTTATGGAAAAGAGGTAAACGAATTTCTTTACATAATGTGTTTAAAATTC------------------------------------------TCTTTCCAGTATTCAGATTTTAACGAAATGCAGATCACTGCAATTCTTCATGTTAAATCACGTCTGAGGTTTTTCCTTAATTGAGTAAATTGGGTTAAAATATTGCATTTTTATTGCTAGCTTAATAGCTTAAAGAGG-----TATTAAACATTTAATTATTAACCTTGACATGGAAGAATTGGAGAGATTTCTTAGAT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46053656 320 -  98464013 AAAAGGCAATAATTTATGTTAGGTATACCTAGCACCTGATGATAATCAACATGCTTTAAGGGTAAGGAAGTTAATATTTCTTTATGGAAAAG----GAACAAACTTCTTCACATACTACAGTTAAAATTC------------------------------------------TCTTTCTAGTATTCAAATTTTAATGGCATGCAGATCGCTGCAATTCTTCATGTTAAATCACATCTGGGATTGTTCCTTAATCAAGTAAATTGGGTTAAAATGTTGCATTTTTATTGCTAGCTTAACAGCTTAAAGAGG-----TATTAAACATTTAATTATTAACCTTGACATGAAAGAATTGGAGAGATGTCTTAGCT
i calJac3.chr15                I 1 C 0
s mm10.chr6                     45769506 317 - 149736546 -AAATGGTAGAAGCCATGTCAGGTGCACACAGTGCTTCCCACTAGGCAATGTACACCAAGGGAAATGAAGACACTATTTGGTTATTGAAAAGGGTCAAATGGGCTTCTT------GCATATTTGAAAGTC------------------------------------------TCTTTCTAGCACTCAGATGTTCATGAAATGCAGATCAGTGCAATTCTTCATGTTAAATAACATCTGGGATTGTTCCTTAATCGAGTAAATTGGGTTAAAATATTGCATTTTTATTGCTAGCTTAATAGCTTAAAGAGG-----TATTAAACATTTAATTATTAACCTTGACATGAAAGAATTGAAGAGATTTCTTGGAT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16600256 324 +  58134056 AAAATGCAATGATTCATAGTAGGTATATCCAACATCTAATGATAATCAACATGCTTTTTGGGAAATGAGGATAATACTCCCTTATTGAAAAGAGTTAAATGAACTTCTTCACATAATATGTTTAAAATTC------------------------------------------TCTTTCTAGTGTGTAGATTTTAATGAAATGCAGATCACTGCAATTCTTCATGTTAAATAACATCTGGGATTGTTCTTTAATCGAGTAAATTGGGTTAAAATATTGCATTTTTATTACTAGCTTAATAGCTTAAAGAGG-----TATTAAACATTTAATTATTAACCTTGACATGAAAGAATTGGAGAGATTTCACTGAT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725242 583 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e nomLeu3.chr21                 67581273 2167 +  86207423 I

a score=962523.000000
s hg38.chr14_KI270725v1_random      1956 262 +    172810 GATTTAAGGATTTGAAAGTTCTCTCTTCTGAGTGAAGTTTATATGTTGGGATAAAGCAAATCTAATGAGCTGTCTTG-AAATGGGCATCTGAC--TAATTGAAAGAGACTAATAATATAGCATACAT-------ATATATCCAATGTTACTTAAGGAAATCATTCATAGAAGAATAGATGTTTTATTTTAAAA--ATCAACTAATGGATGTT-AAATATTAATAAACTCATTATAACTGAATAACAGATAGGT-TAGCCTAGTAatttactcattc
s panTro4.chr3                 201674126 262 - 202329955 GATTTAAGGATTTGAAAGTTCTCTCTTCTGAGTGAAGTTTATATTGTAGGATAAAGCAAATCTAACGAGCTATCCTG-AAATGGGCATCTGAC--TAATTGAAAGAGACTAATAATAGAGCATACAT-------ATATATCCAATGTTACTTAAGGAAATCATTCATAGAAGAATAGATGCTTTATTTTAAAA--ATCAACTAATGGATGTT-AAATATTAATAAAGTCATCATAACTGAATAACAGATAGGT-TAGCCTAGTAatttactcattc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653632 259 + 202140232 GATTTAAGGATTTGAAAGTTCTCTCTTCTGAGTGAAGTTTATATGTTAGGATAAAGCAAATCTAACGAGCTATCTTG-AAATGGGCATCTGAC--TAATTGAAAGAGACTAATAATATAGCATACAT-------ATATATCCAATGTTACTTAAGGAAATCATTCAT---AGAATAGATGttttattttaaaa--atcaactaatgtatatt-aaatattaataaaCTCATCATAACTGAATAACAGATAGGT-TAGCCTAGTAatttactcattc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67583440 262 +  86207423 GATTTAAGGATTTGAAAGTTCTCTCTTCTGAGTGAAGTTTATATGTTAGGATAAAGCAAATATAACGAGCTATCTTG-AAATGGGCATCTGAC--TAATTGAAAGAGACTAATAATATAGCATACAT-------ATATATCCAACGTTACTTAAGGAAATCATTCATAGAAGAACAGATATTTTATTTTAAAA--ATCAACTAATGGATGTT-AAATATTAATAAACTCATCATAACTGAATAACAGATAGGT-TAGCCTAGTAatttactcattc
i nomLeu3.chr21                I 2167 C 0
s rheMac3.chr2                  61840246 258 + 192599291 GATTTGAGGATTTGTAAGTTCTCTCTTCTGAGTGAAGTTTATATGTTAGGATAAAGCAAATCTAACGAGCTGTCTTG-AAATGGGCATTGGAC--TAATTGAAAGAGACTAATAATATAGCATACAT-------ATATATCCAACGTTACTTAAGGGAATCATTCATAGAAGAATAGATGTTTTATTTTAAAA--ATCAACTAATGTATGCT-AAATACTAATAAAATCATCATAACTGAATAACAGC----T-TAGCCTAGTAatttactcattc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60996242 262 - 192460366 GATTTGAGGATTTGTGAGTTCTCTCTTCTGAGTGAAGTTTATATGTTAGGATAAAGCAAATCTAACGAGCTGTCTTG-AAATGGGCATTGGAC--TAATTGAAAGAGACTAATAATATAGCATACAT-------ATATATCCAACGTTACTTAAGGGAATCATTCATAGAAGAATAGATGTTTTATTTTAAAA--ATCAACTAATGTATGCT-AAATACTAATAAAATCATCATAACTGAATAACAGATAGGT-TAGCCTAGTAatttactcattc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59555859 262 + 187378091 GATTTGAGGATTTGTAAGTTCTCTCTTCTGAGTGAAGTTTATATGTTAGGATAAAGCAAATCTAACGAGCTATCTTG-AAATGGGCATTGGAC--TAATTGAAAGAGACTAATAATATAGCATACAT-------TTATATCCAAAGTTACTTAAGGGAATCATTCATAGAAGaatagatgttttattttaaaa--atcaactaatGTATGCT-AAATACTAATAAAATCATCATAACTGAATAACAGATAGGT-TAGCCTAGTAATttactcattc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64491867 262 - 101219884 GATTTGAGGATTTGTAAGTTCTCTCTTCTGAATGAAGTTTATACGTTAGGATAAAGCAAATCTAATGAGCTATCTTG-AAATGTGCATTTGAC--TAATTGAAAGACACTAATAATATAGCATACAT-------ACATATCCAATGTTACTTAAGGAAATCATTCATAGAAGAATAGATGTTTTATTTTAAAA--ATCAACTAATGGATGCT-AAATATTAATAAAATCATCATAACTGAATAACAGATAGGT-TAGCCTAGTAatttactcattc
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46053976 260 -  98464013 GATTTAAGGATTTGCAAGTTCTCTCTTCTGAGTGAAGTTTGTATGTTAGGATAAAACAAATCTAACAATATATCTTG-AAATAGGCATTTGAC--TAATTGAAAGATACAAATAAAATAACATACAT-------ATACACCAAACATTACTTTA--AAATCATTCAGAGAAGAATAGATGTTTTATTTTAAAA--ATCAACTAATGGATGTT-AAATATTAATAAAATCACCATAACTGAATAACAGACAGGT-TAGTCTAGTGattcactcattc
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45769823 253 - 149736546 GATTTAAGGATTTAAAAGTTCTCTCTTCTGAGTGAAATTCATATGCC-TGATAAAGCAGATCTAACTAGTTATCTTGAAAAAAAGCATTTTACTTTAATTGAAATAAAGTAATAATAATGAAT--------------------AAGTTGCTTGAAGACATCATTCACAGAAGAATGAAAGTCTTACAGTAAAGGCAACTGCTGACAGATGTTAAAATGCCCAGAGACT-GTCACTACTAAAGAATAATTAGGT-CAAACTAGCAATTTCTTTATAT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16600580 272 +  58134056 GATTTAAGGATTTCAAAATTCTCTCTTCTGAGTTAAGTTCATATGTAAGGATGAGATAGCTCTAACTAGCCATCCTG-AAATGGGGGTTTGACCTTAATTGAAAGAAATGCATAACATACCATGTATACAAATGATATGTATAACATTAGTTGAGCAAATCATTCATGGAGGAATATGTGTTTTATATGAAAAATATCAAGTAATGGATGTT-AGATATTAGAAAAATC--CATGACTAAACAACAGAAAAATATAGCCTGATTattccttcattc
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725242 583 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5005.000000
s hg38.chr14_KI270725v1_random      2218 1 +    172810 a
s panTro4.chr3                 201674388 1 - 202329955 a
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653891 1 + 202140232 a
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67583702 1 +  86207423 a
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61840504 1 + 192599291 a
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60996504 1 - 192460366 a
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59556121 1 + 187378091 a
i papAnu2.chr2                 C 0 C 0
s calJac3.chr15                 46054236 1 -  98464013 a
i calJac3.chr15                C 0 C 0
s saiBol1.JH378125              27725825 1 +  27742158 a
i saiBol1.JH378125             I 583 I 88
s mm10.chr6                     45770076 1 - 149736546 A
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16600852 1 +  58134056 a
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e chlSab2.chr22                 64492129 0 - 101219884 C

a score=1846.000000
s hg38.chr14_KI270725v1_random      2219 1 +    172810 a
s panTro4.chr3                 201674389 1 - 202329955 a
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653892 1 + 202140232 a
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67583703 1 +  86207423 a
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61840505 1 + 192599291 a
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60996505 1 - 192460366 a
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59556122 1 + 187378091 a
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64492129 1 - 101219884 a
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46054237 1 -  98464013 c
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45770077 1 - 149736546 A
i mm10.chr6                    C 0 I 2487
s canFam3.chr20                 16600853 1 +  58134056 g
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725826 88 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=277644.000000
s hg38.chr14_KI270725v1_random      2220 86 +    172810 aaaatatttactgtacattcatgatgtggaaagcagtattctaggcactagcaagacagcagggaaTTGGTTCTTATCAAACTTAT
s panTro4.chr3                 201674390 86 - 202329955 aaaatatttactgtacattcatgatgtggaaagcagtattctaggcactagcaagacagcagggaattggttcttatcaaacttat
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653893 86 + 202140232 aaaatattgactgtacattcatgatgtggaaagcagtattctaggcactggcaagacagcagggaattggttcttatcaaacttat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67583704 86 +  86207423 aaaatatttactgtacattcatgatgtggaaagcagtattctaggcattgggaagacggcagggaattggttcttatcaaacttat
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61840506 85 + 192599291 aaaatatttactgtacatttgtgatgtggaaagtagtattctaggcattgggaagacagtcgggaaTTGGTT-TTATAAAACCTAT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60996506 85 - 192460366 aaaatatttactgtacatttgtgatgtggaaagtagtattctaggcattgggaagacagtcgggaattggtt-ttataaaacctat
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59556123 85 + 187378091 aaaatatttgctgtacATTTGTGATGTGGAAAGTAGTATTCTAGGCATTGGGAAGACAGTCGGGAATTGGTT-TTATAAAACCTAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64492130 85 - 101219884 aaaatatttactgtacatttgtgatgtggaaagcagtattccaggcattgggaagacagtcgggaattggtt-ttataaaacctat
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46054238 86 -  98464013 aaaatatttattgtacatatgtgatgtggaaagaagtattctaggcactgggaagacagcagggaaTCAGTTCTTATAAAATTTAT
i calJac3.chr15                C 0 I 1
s canFam3.chr20                 16600854 86 +  58134056 caaatatttgctgtacacctgtcatgtggaaagtgcttttctagacactgagaagaaagcagtgaatcagttctcataacgctcat
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45770078 2487 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725826 88 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5005.000000
s hg38.chr14_KI270725v1_random      2306 1 +    172810 A
s panTro4.chr3                 201674476 1 - 202329955 a
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653979 1 + 202140232 a
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67583790 1 +  86207423 a
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61840591 1 + 192599291 A
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60996591 1 - 192460366 a
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59556208 1 + 187378091 A
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64492215 1 - 101219884 a
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46054325 1 -  98464013 A
i calJac3.chr15                I 1 C 0
s saiBol1.JH378125              27725914 1 +  27742158 A
i saiBol1.JH378125             I 88 I 865
s canFam3.chr20                 16600940 1 +  58134056 a
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45770078 2487 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=506116.000000
s hg38.chr14_KI270725v1_random      2307 162 +    172810 TTCTACTAGAAAT-----AGATGCATATGAATAGAG--TTTTCAGAAGAGAAATTAAAGGTTGCAAGAA-----ATATAAAGAATATAAAGAGTCACATATTAATAGGCAATATAGGCTAtggtatgctgacaaatgtttaataaccagctctctaaaagg-----aacaaagcaagcc--
s panTro4.chr3                 201674477 162 - 202329955 ttctactagaaat-----agaTGCATATGAATAGAG--TTTTCAGAAGAGAAATTAAAGGTTGCAAGAA-----ATATAAAGAATATAAAGAGTCACATATTAATAGGCAATATAGGcaatggtatgctgacaaatgtttaataaccagctctctaaaagg-----aacaaagcaagcc--
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69653980 162 + 202140232 ttctactagaaat-----agatgcatatgaattgag--ttttcataagagaaattaaaggttgcaagaa-----atataaagaatataaagagtcacatattaataggcaatataggcaatggtatgctgacaaatgtttaataaccagctctctaaaagg-----aacaaagcaagcc--
i ponAbe2.chr3                 C 0 I 2
s nomLeu3.chr21                 67583791 162 +  86207423 ttctactagaaat-----agaTGCATATGTATAGAG--TTTTCAGAAGAGAAATTAAAGGTAGCAAGAA-----ATATAAAGAATATAAAGAGTCACATATTAACAGGCAATATAGGcaacggtacgctgacaaatgtttaataaccagctttctaaaggg-----aacaaagcaatcc--
i nomLeu3.chr21                C 0 I 2
s rheMac3.chr2                  61840592 167 + 192599291 TTCCGCCAGAAAT-----AGATGCATATGAATAGAG--TTTTCAGAAGAGAAATTAAATGTTGTAATAAGTAGTATAAAGAGAATATAAAGAGTCACATATTAATAGGCAATATAGGcaatggtatgctgacaaatgtttaataaccagctgtctaaaagg-----aacaaagccagcc--
i rheMac3.chr2                 C 0 I 2
s macFas5.chr2                  60996592 167 - 192460366 ttccgccagaaat-----agatgcatatgaatagag--ttttcagaagagaaattaaaggttataataagtagtataaagagaatataaagagtcacatattaataggcaatataggcaatggtatgctgacaaatgtttaataaccagctgtctaaaagg-----aacaaagccagcc--
i macFas5.chr2                 C 0 I 2
s papAnu2.chr2                  59556209 167 + 187378091 TTCCGCCAGAAAT-----AGATGCATATGAATAGAG--TTTTCAGAAGAGAAATTAAAGGTTGTAATAAGTAGTATAAAGAGAATATAAAGAGTCACATATTAATAGGCAATATAGGCAATGGTATGCTGACAAATGTTTAATAACCAGCTGTCTAAAAGG-----AACAAAGCCAGCC--
i papAnu2.chr2                 C 0 I 2
s chlSab2.chr22                 64492216 166 - 101219884 ttctaccagaaat-----agatgcatatgaatagag---tttcagaagagaaattaaaggttgtaataagtagtataaagagaatataaagagtcacatattaagaggcaatataggcaatggtatgctgacaaatgtttaataaccaactgtctaaaagg-----aacaaagccagcc--
i chlSab2.chr22                C 0 I 2
s calJac3.chr15                 46054326 169 -  98464013 TTCTACCAGAAAC-----AGACGCATATGAATAGAG--TTTTCAGAAGAGAAATAAAAGATTGTAATAA-TAGTATGAAGAGAATAT--AGAGTCACATATTAATAGGCAATATAGGcagtggcatgctaacaaacgtttaattaccagctctcttaaaaggaacaaacaaagcaagcc--
i calJac3.chr15                C 0 I 9
s canFam3.chr20                 16600941 169 +  58134056 ttctacaagaaattgacaagacacatataaatacagattttttaaaagacaaat----gattttaataaata--gtacaaagaata-aaagagttatacattgttaggtgatgtaggcaatggtatgttggtaaatgttcaaaaatcaattctcaaaaaaa-----aaaaatctctggtta
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45770078 2487 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725915 865 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=-880.000000
s hg38.chr14_KI270725v1_random      2469 1 +    172810 -g
s panTro4.chr3                 201674639 1 - 202329955 -g
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69654144 1 + 202140232 -g
i ponAbe2.chr3                 I 2 C 0
s nomLeu3.chr21                 67583955 1 +  86207423 -g
i nomLeu3.chr21                I 2 C 0
s rheMac3.chr2                  61840761 1 + 192599291 -g
i rheMac3.chr2                 I 2 C 0
s macFas5.chr2                  60996761 1 - 192460366 -g
i macFas5.chr2                 I 2 C 0
s papAnu2.chr2                  59556378 1 + 187378091 -G
i papAnu2.chr2                 I 2 C 0
s chlSab2.chr22                 64492384 1 - 101219884 -g
i chlSab2.chr22                I 2 C 0
s canFam3.chr20                 16601110 1 +  58134056 t-
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45770078 2487 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725915 865 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46054495 9 -  98464013 I

a score=1266225.000000
s hg38.chr14_KI270725v1_random      2470 370 +    172810 agtt------tttgccattttctgtgatgaaaacattcccaacatgactaatttaaatatac-taatatgacatcactcaatacatagttggaaagag--gtataccataagccctagtgagctgttataagacaacattggcacacacactATGACAAGATTactttaagttggatactcagaaaaggcctctctgggaaagtgacactt--aaactaagatctgaaaaaccag-aaaaagtcgtgtgtga-aatcttgaggcattacaccctgaagagggataacagct-----aaagttcccaaaccagtgcaagcctggattgttggaagaacaagaag---gccaataagtctggggtgtactacataaaaggaggatatacaatg
s panTro4.chr3                 201674640 373 - 202329955 agtt------tttgccattttctgtgatgaaaacattcccaacatgactgatttaaatatac-taatatgacatcactcaatacatagttggaaagag--gtataccataagccctagtgagctgttataagacagcattggcacacacactATGACAAGATTactttaaattggatactcagaaaaggcctctctgggaaactgacactt--aaactaagatctgaaaaaccag-aaaaagtcgtgtgtga-aatcttgaggcattacaccctgaagagggataacagct-----aaagttcccaaaccagtgcaagcctggattgtcggaggaacaagaagaaggccaataagtctggggtgtactacataaaaggagggtatacaatg
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69654145 373 + 202140232 agtt------tttgccattttctgtgatgaaaacattcccaacatgactgatttaaatatac-taatacgacatcactcaatacatagttggaaagag--gtataccataaaccctagtgagttgttataagacagcattggcacacacactatgacaagattactttaagttggatactcagaaaaggcctctctgggaaagtgacgctt--aaactaagatctgaaaaaccag-aaaaagtcgtgtgtga-aatcttgaggcattacatcctgaagagggataacagct-----aaagttcacaaaccagtgcaagcctggattgttggaggaacaagaagaaggccaataagtctggggtgtactacataaaaggaggatatacaatg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67583956 381 +  86207423 agttgcagtgtttgccattttctgtgatgaaaacattcccaacatgactgatttaaatatac-taatatgacatcactcaatacatagttggaaagag--gtgtaccataagccctagtgagctgttttaagacagcatcggcacacacactATGACAAGATTactttaagttggatactcagaaaaggcctctctgggaaagtgacacttagaaactaagatctgaaaaaacag-aaaaagtcatgtgtga-aatcttgaggcattacaccctgaagagggataacagct-----aaagttcccaaaccagtgcaagcctggattgttgaaggaaaaagaagaaggccaataagtctggggtgtactacataaaaggaggatatacaatg
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61840762 379 + 192599291 ggttgcagtgtttgccattttctgtgatgaaaacattcccaacatgactgatttaagtctac-taatatggcatcactcaatacatagttggaaagag--gtataccataagccctagtgagttgttgtaagacagcattggcacacacactATGACAAGATTactttaagttggatactcagaaaaagcctctctgggaaagtgacactt--aaactaagatctgaataaccag-aaaaaatcatgtgtga-aatcttgaggaattacaccctgaagagggaaaacagct-----aaagttcccaaaccagtgcaagcctggattgttggaggaataggaagaaggccaataagtctggggtgtactacataaaaggaggatatacaatg
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60996762 379 - 192460366 ggttgcagtgtttgccattttctgtgatgaaaacattcccaacatgactgatttaagtctac-taatatggcatcactcaatacatagttggaaagag--gtataccataagccctagtgagttgttgtaagacagcattggcacacacactatgacaagattactttaagttggatactcagaaaaagcctctctgggaaagtgacactt--aaactaagatctgaataaccag-aaaaaatcatgtgtga-aatcttgaggaattacaccctgaagagggaaaacagct-----aaagttcccaaaccagtgcaagcctggattgttggaggaataggaagaaggccaataagtctggggtgtactacataaaaggaggatatacaatg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59556379 379 + 187378091 GGTTGCAGTGTTTGCCATTTTCTGTGATGAAAACATTCCCAACATGACTGATTTAAGTCTAC-TAATATGGCATCACTCAATACATAGTTGGAAAGAG--GTATACCATAAGCCCTAGTGAGTTGTTGTAAGACAGCATTGGCACACACAGTATGACAAGATTACTTTAAGTTGGATACTCAGAAAAGGCCTCTCTGGGAAAGTGACACTT--AAACTAAGATCTGAATAACCAG-AAAAAATCATGTGTGA-AATCTTGAGGAATTACACCCTGAAGAGGGAAAACAGCT-----AAAGTTCCCAAACCAGTGCAAGCCTGGATTGTTGGAGGAATAGGAAGAAGGCCAATAAGTCTGGGGTGTACTACATAAAAGGAGGATATACAATG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64492385 380 - 101219884 ggttgcagtgtttgccattttctgtgatgaaaacattcccaacatgactgatttaagtctac-taatatggcatcactcaatacatagttggaaagag--gtataccataagccctagtgagttgttgtaagacagcattggcacacacactatgacaagattactttaagttggatactcagaaaaggcctctctgggaaagtgacactt--aaactaagatctgaataaccagaaaaaaatcatgtgtga-aatcttgaggaattacaccctgaagagggaaaacagct-----aaagttcccaaaccagtgcaagcctggattgttggaggaataggaagaaagccaataagtctggggtgtactacgtaaaaggaggatatacaatg
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46054504 370 -  98464013 ------agtatttgccattttctgtgatgaaaacattcccaacatgactgatttcagtctac-tagcatgacatcactcaatacatagatgcaatgag--gtatgccatcagccctagtgagctgttacaagacagctctggcacacATGCTATGATAAGATTactttaagttgcatactcagaaaaggcctctctgggaaactgacactt--aaactaagatctgaataaccag-aaaaagtcacatgtga-aatcttgaggcattacaccctgaacagagaaaacagat-----aaagtccccaaactaatacaagcttggattgttggagaaacagcaag---gccagtaagtctggactatactacacaataagaggatataaaatg
i calJac3.chr15                I 9 C 0
s canFam3.chr20                 16601111 369 +  58134056 ------agtgtttgccattctctgttgtgtaaataatcccagcatggctgatttcaagccatggaacatgacattgctgaatagagaattgggaagagatgtataccatgaactctagtgagctgttctaagagggctccagcatac----catgataaggctaagttaagttgaat---------aggtctccctgggaaaatgacattt--aaactaaggcctgaataaccagaaaaaaatcatgggtgaggaactatataagccatattctgagcagagaaaacagctcgtaaaaagtcccaaaggcaatacaagcttggactat-ggaggaacaaaaagacggccagtgaatctgaagtgtaacaagcaaacggaggatgaatcatg
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45770078 2487 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725915 865 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=434099.000000
s hg38.chr14_KI270725v1_random      2840 118 +    172810 agattagaaaaacagtcaaagcttttcatgcagaacttcataatatagagtatgaaatttggcaaagatgtcactggaaggtttGTGAATCATTTTAATTGTATTGATTAAAACTT-TT
s panTro4.chr3                 201675013 118 - 202329955 agattagaaaaacagtcaaagcttttcatgcagaacttcgtaatatagggtatgaaatttggcaaagatgtcactggaaggtttGTGAATCATGTTAATTGTATTGATTAAAACTT-TT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69654518 119 + 202140232 ggattagaaaaacagtcaaagcttttcatgcagaacttcgtaatacagggtatgaaatttggcAAGGATGTGACTGGAAGGTTTGTGAATCATGTTAATTGTATTGATTAAAACTTACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67584337 119 +  86207423 ggattagaaaaatagtcaaagcttttcatgcagaacttcgtaatatagggtatgaaatttggcaaggatgtcactggaaggtttGTGAATCATGTTAATTGTATTAATTAAAACTTACT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61841141 119 + 192599291 ggattagaaaaacagtcaaagattttcatgcagaactttgtaatatagggtatgaaatttggcAAGGATGTCACTGGAAGTTTTGTGAATCATGTTAATTGTATTTATTAAAACTCATT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60997141 119 - 192460366 ggattagaaaaacagtcaaagattttcatgcagaactttgtaatatagggtatgaaatttggcAAGGATGTCACTGGAAGTTTTGTGAATCATGTTAATTGTATTTATTAAAACTCATT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59556758 119 + 187378091 GGATTAGAAAAACAGTCAAAGATTTTCATGCAGAACTTTGTAATATAGGGTATGAAATTTGGCAAGGATGTCACTGGAAGTTTTGTGAATCATGttaattgtatttattaaaaCTCATT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64492765 119 - 101219884 ggattagaaaaacagtcaaagattttcatgcagaactttgtaatatagggtatgaaatttggcAAGGATGTCACTGGAAGTTTTGTGAATCGTGTTAATTGTATTTATTAAAACTCATT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46054874 118 -  98464013 ggattataaaaacagtcaaagtttttcatgcagaactttgtaatacagggtataaaatctggcAAGGATTTTATTAGAAGTTTTGTAAATCATGTTAATTGTATT-ATTACATCTCATT
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45772565 119 - 149736546 AGGCCAGAGAGGAAGCCAACGACTTTCATGCAGAACATTGTGATATAGGATGTGAAATTTGCCTGAGATATTCCTGCAAAGATTATGAATCATATTAATTCCCTTGATTAACATTTATT
i mm10.chr6                    I 2487 C 0
s canFam3.chr20                 16601480 113 +  58134056 aggttggaaaggcagccagagcc-ttcacagggaaccttgtaatatagGGTATATAATATGGCTGGGATGCTACTAGATGATCTATTAATCAT----ATTGTAGTGATTAAAACTCTT-
i canFam3.chr20                C 0 I 205
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725915 865 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=748382.000000
s hg38.chr14_KI270725v1_random      2958 198 +    172810 GCATTTACTCTATGCTGTCTATAGTAAAGC--AAAAAGCTATTACA-GAAGGAGGAACAGACCTTGGCTTACTGATGATAAAAAGAATAGGAAAAAATCCTTAAAAACTAGGTTGAATAAGAGGTTAGAATTAGTAGGCATCTCAACATA-TTATTAC-AATTATGGCATCCAACTTAATACATAATTTGCTTTGCTTCATAC
s panTro4.chr3                 201675131 199 - 202329955 GCATTTACTCTATGCTGTCTATAGTAAAAC--AAAAAGCTATTACAAGAAGGAGGAACAGACCTTGGCTTACTGATGATAAAAAGAATAGGAAAAAATCCTTAAAAACTAGGTTGAATAAGAGGTTAGAATTAGTAGGCATCTCAACATA-TTATTAC-AATTATGGCATCCAACTTAATACATAATTTGCTTTGCTTCATAC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69654637 198 + 202140232 GCATTTACTCTATGCTGTCTATAGTAAAGC--AAAAAGCTATTACA-GAAGGAGAAACAGACTTTGGCTTACTGACGATAAAAAGAATAGGAAAAAATCCTTAAAAACTAGGTTGAATAAGAGGTTAGAATTAGTAGGCATCTCAACATA-TTATTAC-AATTATGGCATCCGACTTAATACATAATTTGCTTTGCTTCATAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67584456 196 +  86207423 GCATTTACTC-ATGCTGTCCATAGTAAAGC--AAAAAGCTATTACA-GAAGGAGGAAAAGAC-TTGGCTTACTGATGATAAAAAGAATAGGAAAAAATCCTTAAAAACTAGGTTGAATAAGAGGTTAGAATTAGTAGGCATCCCAACATA-CTATTAC-AATTATGGCATCCAACTTAATACATAACTTGCTTTGCTTCATAC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61841260 198 + 192599291 GTATTTACTCTATGCTTTCCATAGTAAAGC--AAAAAGCTATTACA-GGAGGAGGAACAGACCTTGGCTTACTGATGATAAAAAGAATATGAAAAAATCCTTAAAAACTAGGTTGAATAAGAGGTTAGAATTAGTAGGCATGCCAACATA-TTATTAC-AATTATGGCATCCAACTTAATACATAATTTGCTTTGCTTCATAC
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  60997260 198 - 192460366 GTATTTACTCTATGCTTTCCATAGTAAAGC--AAAAAGCTATTACA-GGAGGAGGAACAGACCTTGGCTTACTGATGATAAAAAGAATATGAAAAAATCCTTAAAAACTAGGTTGAATAAGAGGTTAGAATTAGTAGGCATGCCAACATA-TTATTAC-AATTATGGCATCCAACTTAATACATAATTTACTTTGCTTCATAC
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59556877 199 + 187378091 ATATTTACTCTATGCTTTCCATAGTAAAGC--AAAAAGCTATTACA-GAAGGAGGAACAGACCTTGGCTTACTGATgataaaaagaatatgaaaaaatccttaaaaactaGGTTGAATAAGAGGTTAGAATTAGTAGGCATGCCAACATATTTATTAC-AATTATGGCATCCAACTTAATACATAATTTGCTTTGCttcatac
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64492884 198 - 101219884 GTATTTACTCTATGCTTTCCATAGTAAAGC--AAAAAGCTATTACA-GAAGGAGGAACAGACCTTGGCTTACTGATGATAAAAAGAATATGAAAAAATCCTTAAAAACTAGGTTGAATAAGAGGTTAGAATTAGTAGGCATGCCAACATA-TTATTAC-AATTATGGCATCCAACTTAATACATAATTTGCTTTGCTTCATAC
i chlSab2.chr22                C 0 I 1
s calJac3.chr15                 46054992 198 -  98464013 GCATTTACTCTATGCTGTCCACAGTAAAGC--AGAAAGCTGCTACA-AAAGGAGGAACAGACCTTGGCTTACTGATGATAAAAAGAATATGAAACATTTTTTAAAAAGCAAGTCGAATAATAGATTAGAATTAGTAGGCATGTCAACCTA-TTATTAG-CATTATGGCATCCAACTTAATATATAATTTGCTTTGCTTCATAC
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45772684 195 - 149736546 GCATTTAGTCCACGCTGTCCCCTGTGCAGT--AACATGTTATTACT-GAAGGA-ACACAGCCATAAGCTCACAGAGCATAAGAATAATAGGAGAAAACTCCCGGGAACTGGATTGAATAAAAGCTCAGAGTTGAAGAGCATGTCAACATA-CTATTACTAATTATAGCATCCAAC--AAACAATAATTTGC-TTAATTCACAT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16601798 193 +  58134056 GTATTTACTCTGTGCTGTTCATAGTAAGGTAAAAAAAGTTATTGCA-GAATGAAGGACAGGCCTTGGCTCTTTG-TGATAGGACAAACATTAGAAAATATTTGGGAACTAGGTTAAATAAAACTTTGGAATTAGTAAG--TGTCAACATA-ATATTACTAATTGTGGCATTCAACTTAATACATAATTTGC-----TTCATGC
i canFam3.chr20                I 205 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27725915 865 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=6006.000000
s hg38.chr14_KI270725v1_random      3156 1 +    172810 A
s panTro4.chr3                 201675330 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69654835 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67584652 1 +  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61841459 1 + 192599291 A
i rheMac3.chr2                 I 1 C 0
s macFas5.chr2                  60997459 1 - 192460366 A
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59557077 1 + 187378091 a
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64493083 1 - 101219884 A
i chlSab2.chr22                I 1 C 0
s calJac3.chr15                 46055190 1 -  98464013 A
i calJac3.chr15                C 0 I 1
s saiBol1.JH378125              27726780 1 +  27742158 A
i saiBol1.JH378125             I 865 I 299
s mm10.chr6                     45772879 1 - 149736546 A
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16601991 1 +  58134056 A
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1291795.000000
s hg38.chr14_KI270725v1_random      3157 297 +    172810 AATATA--TTTTTCTGCTTTTGTTTTCTATGGTCAATTACCACTGTCTGTCATGTTGT-ACTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTCCTGAGATCATGACCCAAGAGCTTATATATAAAACAAATGTTTTTAAAACTGTGCCTATAATAGCACACAACAGCAAGTATTAGATTCCACAATCATAATATTTGGGAAATAAAATGTTATGGACTCCAAGAGAACTGTATATATTTCTAACTCTATTCAAAAATGTCCTGTAACTCTAG
s panTro4.chr3                 201675331 297 - 202329955 AATATA--TTTTTCTGCTTTTGTTTTCTATGGTCAATTACCACTGTATGTCATGCTGT-ACTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTCCTGAGATCATGACCCAAGAGCTTATATATAAAACAAATGTTTTTAAAATTGTGCCTATAATAGCACACAACAGCAAGTATTAGATTCCACAAACATAATATTTGGGAAATAAAATGTTATGGACTCCAAGAGAACTGTATATATTTCTAACTCTATTCAAAGATGTCCTGTAACTCTAG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69654836 297 + 202140232 AATATA--TTTTTCTGCTTTTGTTTTCTATAGTCAATTACCACTATCTGTCATGTTGT-ACTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTCCTGAGATCATGACCTAAGAGCTTATATATAAAACAAATGTTTTTAAAATTGTGCCTATAATAGCACACAACAGCAAGTATTAGATGCCACAAATATAATATTTGGGAAATAAAATGTTATGGACTCCAAGGGAACTGTATATATTTCTAACTCTATTCAAAAATGTCCTGTAACTCTAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67584653 297 +  86207423 AATATA--TTTTTCTGCTTTTGTTTTCTATAGTCAATTACCACTGTCGGTCATGTTGT-ACTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTCCTGAGATCATGACCTAAGAGCTTATATATAAAACAAATGTTTTTAAAATTGTGCCTATAACAGCACACAACAGGAAGTATTAGATGCCACAAACATAATATTTGGGAAATAAAATGTTATGGACTCCAAGGGAACTGTATATATTTCTAACTCTATTCAAAAATGTCCTGTAACTCTAG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61841460 297 + 192599291 AATATA--TTTTTCTGCTTTTGTTTTCTATAGCCAGTTACCACAGTCTGTCATGCTGT-ACTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTTCTGGGATCATGACCTAAGAGCTTGTATATAAAACAAACGTTTTTAAAATTGTTCCTATAATAGCATACAACAGCAAGTATTAGATGCCACAAACATAATATTTGGGAAATAAAATGTTATGGACTCCAAGGGAACTGTATATATTTCTAACTCTATTCAAAAATGTCCTGTAACTCTAG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60997460 297 - 192460366 AATATA--TTTTTCTGCTTTTGTTTTCTATAGCCAGTTACCACAGTCTGTCATGCTGT-ACTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTTCTGGGATCATGACCTAAGAGCTTGTATATAAAACAAACGTTTTTAAAATTGTGCCTATAATAGCATACAACAGCAAGTATTAGATGCCACAAACATAATATTTGGGAAATAAAATGTTATGGACTCCAAGGGAACTGTATATATTTCTAACTCTATTCAAAAATGTCCTGTAACTCTAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557078 297 + 187378091 aatata--tttttctgcttttgtttcctaTAGCCAGTTACCACAGTCTGTCATGCTGT-ACTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTTCTGGGATCATGACCTAAGAGCttgtatataaaacaaacatttttaaaattgtgcctATAATAGCATACAACAGCAAGTATTAGATGCCACAAACATaatatttgggaaataaaatGTTATGGACTCCAAGGGAACTGTATATATTTCTAACTCTATTCAAAAATGTCCTGTAACTCTAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493084 297 - 101219884 AATATA--TTTTTCTGCTTTTGTTTTCTATAGCCAGTTACCGCAGTCTGTCATGCTGT-ACTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTCCTGGGATCATGACCTAAGAGCTTGTATATAAAACAAACGTTTTTAAAATTGTGCCTATAATAGCATACAACAGCAAGTATTAGATGCCACAAACATAATATTTGGGAAATAAAATGTTATGGACTCCAAGGGAACTGTATATATTTCTAACTCTATTCAAAAATGTCCTGTAACTCTAG
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055192 298 -  98464013 AATATATTTTTTTCTGCTTTTGTTTTCTATAGCCAATTACCACTGTCTGTCATGTTCC-ATTATTATCACTTTTAGAAAGTGATTCTATCATACAAAACCAACATAATCTAAAATGACTTCCTGAGATCCTGACCTAAGAGCTTATATATAAAACAAATGTTATT-AAATTGAACCTATAATAGCACACAACAGCAAGTATTAGATGCCACTAACATAATATTTGGGAAATAAAATGTTATTGACTCCAAGGGAACTGTATATATTTCTAACTCTATACAAAAATGTCCTGTAACTCTAG
i calJac3.chr15                I 1 I 1
s mm10.chr6                     45772880 292 - 149736546 -ACAC---TTTTCCTCCTTTTGTTCTCTATGGCCAATTACCAC----TGTCAGGTTGTCACTACAGTACTCTTTAGGAAATGATTGTATCATATAAAATCAACATAATCTAAAATGACTTCTGGAGATCTTGACCTAAGCACTTATATATAAAACAAATGGTTTTTAAATTGTGGTTATAATAGCACATAAAAGCAAGGAGTAGTTGCAACACACATAATATCTGGCAAATAAAATGTTATGGACTCCAAGGGAACTGTAGATATTTCTAACTCCATTCAAAAATGTCCTGGAACTCTAG
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16601992 295 +  58134056 --AATT--TTTTTCTGCTTTTGTTTTCTATAGCGAAATACTATTGTCATTCATGTTGTCACTACTGTCATTTCTAGAAAATGATTCTATCATATAAAAT-AGCATAATATAAAATGACTTCCTAAGATCCTGACCTAAGAGCTTATATATAAAACAAATGTTTTTTAAATTGTGCCTATAATGGCACATAACAGCAGGCATTAGATGCCATGGACGTAATATCTGGCAAATAAAATGTTATGGACTCCAAGGGAACTGTAGATATTTCTAACTCTATTCAAAAATGTACTGTAACTGTAG
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27726781 299 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=6006.000000
s hg38.chr14_KI270725v1_random      3454 1 +    172810 A
s panTro4.chr3                 201675628 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655133 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67584950 1 +  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61841757 1 + 192599291 A
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60997757 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557375 1 + 187378091 A
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493381 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055491 1 -  98464013 A
i calJac3.chr15                I 1 C 0
s saiBol1.JH378125              27727080 1 +  27742158 A
i saiBol1.JH378125             I 299 I 70
s mm10.chr6                     45773172 1 - 149736546 A
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16602287 1 +  58134056 A
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=258885.000000
s hg38.chr14_KI270725v1_random      3455 53 +    172810 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTAGAT
s panTro4.chr3                 201675629 53 - 202329955 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTAGAT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655134 53 + 202140232 TAAAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTAGAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67584951 52 +  86207423 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTG-TTATTAGAT
i nomLeu3.chr21                C 0 I 105
s rheMac3.chr2                  61841758 53 + 192599291 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTAGAT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60997758 53 - 192460366 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTAGAT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557376 53 + 187378091 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTAGAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493382 53 - 101219884 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTAGAT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055492 53 -  98464013 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTATAG
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45773173 53 - 149736546 TAGAATTTCCCTGGGCTACAGAAAAGCACAGATGGTATTAATGTTTATTAGCT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16602288 53 +  58134056 TAGAATTTCCCTGGGCTATAGAAAAGCACAGATGGTATTAGTGTTTATTAGAT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727081 70 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=60471.000000
s hg38.chr14_KI270725v1_random      3508 16 +    172810 CCATGAAGCTTGCTTT
s panTro4.chr3                 201675682 16 - 202329955 CCATGAAGCTTGCTTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655187 16 + 202140232 CCATGAAGCTTGCTTT
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                  61841811 16 + 192599291 CCATGAAGCTTGCTTT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60997811 16 - 192460366 CCATGAAGCTTGCTTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557429 16 + 187378091 CCTTGaagcttgcttt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493435 16 - 101219884 CCATGAAGCTTGCTTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055545 16 -  98464013 CCATGAAGCTTGCTTT
i calJac3.chr15                C 0 I 1
s mm10.chr6                     45773226 16 - 149736546 CCATGAAGGTTACTTT
i mm10.chr6                    C 0 I 1
s canFam3.chr20                 16602341 16 +  58134056 CCATGAAAGTTGCTTT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727081 70 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e nomLeu3.chr21                 67585003 105 +  86207423 I

a score=-864.000000
s hg38.chr14_KI270725v1_random      3524 1 +    172810 -A
s panTro4.chr3                 201675698 1 - 202329955 -A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655203 1 + 202140232 -A
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                  61841827 1 + 192599291 -A
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60997827 1 - 192460366 -A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557445 1 + 187378091 -a
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493451 1 - 101219884 -A
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055562 1 -  98464013 -A
i calJac3.chr15                I 1 C 0
s saiBol1.JH378125              27727151 1 +  27742158 -A
i saiBol1.JH378125             I 70 I 363
s canFam3.chr20                 16602357 1 +  58134056 T-
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45773242 1 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e nomLeu3.chr21                 67585003 105 +  86207423 I

a score=277713.000000
s hg38.chr14_KI270725v1_random      3525 86 +    172810 AAAAATATATTTGAAA--CACTGAAGTTCTGC--TAATATGGCAAGAATATGGAGATCAGAAACAACAATG----CAAAGTAGACATTCCTTGT
s panTro4.chr3                 201675699 86 - 202329955 AAAAATATATTTGAAA--CACTGATGTTCTGC--TAATATGGCAAGAATATGGAGATCAGAAGCAACAATG----CAAAGCAGACATTCCTTGT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655204 86 + 202140232 AAAAATATATTTGAAA--CACTGATGTTCTGC--TAATATGGCAAGAATATGGAGACCAGAAACAAAAATG----CAAAGTAGACATTCCTTGT
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                  61841828 86 + 192599291 AAATATATATTTGAAA--CACTGATGTTCTGC--TAATATGGCCAGAATATGGAGACCAGAAACAACAATG----CAAAGTAGACATTCTTTGT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60997828 86 - 192460366 AAATATATATTTGAAA--CACTGATGTTCTGC--TAATATGGCCAGAATATGGAGACCAGAAACAACAATG----CAAAGTAGACATTCTTTGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557446 86 + 187378091 aaaaatatatttgaaa--cacTGATGTTCTGC--TAATATGGCCAGAATATGGAGACCAGAAAAAACAATG----CAAAGTAGACATTCCTTGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493452 86 - 101219884 AAAAATACATTTGAAA--CACTGATGTTCTGC--TAATATGGCCAGAATATGGAGACCAGAAACAACAATG----CAAAGTAGACATTCCTTGT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055563 85 -  98464013 AAAAATACATTTGAAA--CACTTATGTTCTGC--TAGTATGGCTAAAATATGGAGATCAGAAACAACAATG----CTAAGTAGA-ATTCCTTGT
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45773243 94 - 149736546 AAAAATATATCTGAAAAGCACTAAAGTTCTGCCTCAGAATGGTCAAAATACAGAGGTTGGAACCCACAGTGTCAACAAAGTAAATAGTCACTGT
i mm10.chr6                    I 1 C 0
s canFam3.chr20                 16602358 88 +  58134056 AAAAATATATCTGAAAAACACTGAAGTTCTGC--TAATATGGCCAGAATAAGGAGGTCAGAAACAACAATG----CAAAGTAGAAACTCCTCGT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727152 363 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e nomLeu3.chr21                 67585003 105 +  86207423 I

a score=900313.000000
s hg38.chr14_KI270725v1_random      3611 281 +    172810 GGGTGGAAGAAAATAAAAATATTTATATTAACCAAGTCTAAGTGCAA--------CAG-CTCAATTAATACA-----------------------------AAACATTAATTTATTTTGGGCTTGGTTATAAAATTAGTTTTAGATTGAGCTTATAAAGTAATTAGGCTAATATTGTCTCCTCTGAGAGGAACCTGGAA----CA------GTGCTATACCATCAGTCCagttcattgtctaaagaaagaaactgatgcataaacag-aaaaa---aaaa--acaatggattgtgataatttctcaaa-aaatgtatgat-gaagtgttacagcagc
s panTro4.chr3                 201675785 279 - 202329955 GGGTGGAAGAAAATAAAAATATTTATATCAACCAAGTCTAAGTGCAA--------CAG-CTCAATTAATACA-----------------------------AAACATTAATTTATTTTGGGCTTGGTTGTAAAATTAGTTTTAGATTGAGCTTATAAAGTAATTAGGCTAATACTGTCTCCTCTGAGAGGAACCTGGAA----CA------GTGCTATACCATCTGTCCagttgattgtctaaagaaagaaaccgatgcataaacag-aaaaa---aaa----caatggattgtgataatttctcaaa-aaatgtacgat-gaagtgttatagcagc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655290 280 + 202140232 GGGTGGAAGaaaataaaaatatttatattaaCCAAGTCAAAGTGCAA--------CAG-CTCGATTAATACA-----------------------------AAACATTAATTTATTTTGGGCTTGGTTGTAAAATTAGTTTTAGATTGAGCTTGTAAAGTTATTAGGCT-ATATTGTCTCCTCTGAGAGGAACCTGGAA----CA------GTGCTATACCATCTGTCCagttcattgtctaaagaaagaaactgatgcataaacag-aaaaa---aaaa--acaatggattgtgataatttctcaaa-aaatgtatgat-gaagtgttatagtagc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585108 283 +  86207423 GGGTGGAAGAAAATAAAAATACTTATATTAACCAAGTCTAAGTGCAA--------CAG-CTCAATTAATACA-----------------------------AAACATTAATTTATTTTGGGCTCGGTTGTAAAATTAGTTTTAGATTGAGCTTATAAAGTTATTAGGCTAATATTGTCTCCTCTGAGAGGAACCTGGAA----CA------GTGCTATACCATCTGTCCagttcattgtctaaagaaagaaactgatgcacaaacag-aaaaa---aaaactacaatggattgtgataatttctcaaa-aaatgtctgat-gaagtgttataggagc
i nomLeu3.chr21                I 105 C 0
s rheMac3.chr2                  61841914 282 + 192599291 GGGTGGAAGAAAATAAAAATATTTATGTTAACCAAGTCTAAGTGCAA--------CAG-CTCGATTAATACA-----------------------------AAACATTAATATATTTTGGGCTGGGTTGTAAAATTAGTTGTAGATTGAGCTTATAAAATTATTAGGCTAATATTGTCTCCTCTGAGAGGAACCTGGAA----CA------GTGCTATACCATCTGTCCagttcattgtctaaagaaagaaactgatgcatagacag--aaaa---aaaattacaatggattgtgataatttctcaaa-aaaagtatggt-gaagtgttataggagc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60997914 282 - 192460366 GGGTGGAAGAAAATAAAAATATTTATGTTAACCAAGTCTAAGTGCAA--------CAG-CTCGATTAATACA-----------------------------AAACATTAATATATTTTGGGCTGGGTTGTAAAATTAGTTGTAGATTGAGCTTATAAAATTATTAGGCTAATATTGTCTCCTCTGAGAGGAACCTGGAA----CA------GTGCTATACCATCTGTCCagttcattgtctaaagaaagaaactgatgcatagacag--aaaa---aaaattacaatggattgtgataatttctcaaa-aaaagtatggt-gaagtgttataggagc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557532 282 + 187378091 gggtggaagaaaataaaaatatttatgttaaccAAGTCTAAGTGCAA--------CAG-CTCGATTAATaca-----------------------------aaacattaatatattttggGCTGGGTTGTAAAATTAGTTGTAGATTGAGCTTATAAAATTATTAGGCTAATATTGTCTCCTCTGAGAGGAACCTGGAA----CA------GTGCTATACCATCTGTCCAGTTCATTGTCTAAAGAAAGAAAGTGATgcatagacag--aaaa---aaaattacaatggattgtgataatttctcaaa-aaaagtacGGT-GAAGTGTTATAGGAGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493538 283 - 101219884 GGGTGGAAGAAAATAAAAATATTTATGTTAACCAAGTCTAAGTGCAA--------CAG-CTCAATTAATACA-----------------------------AAACATTAATATATTTTGGGCTGGGTTGTAAAATTAGTTGTAGATTGAGCTTATAAAATTATTAGGCTAATATTGTCTCCTCTGAGAGGAACCTGGAA----CA------GTGCTATACCATCTGTCCagttcactgtctaaagaaagaaactgatgcatagacag-aaaaa---aaaattacaatggattgtgataatttctcaaa-aaaagtatgat-gaagtgttataggagc
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055648 277 -  98464013 GGGTGGAAGAAAATAAAAATATTTCTATTAACCAGGTCTAAGTGCAA--------TAG-CTCGATTAATACA-----------------------------AAACATTAATTTATTTTGGGC------------TCAGTTTTAGATTGAGTTTATAACATCATTAGGCCAATATTGTCTCCTCTGAACTGAACCTGGAAGACCAA------GTGCTATACCATCTCTTCagatcattgtctaaagaaagaaactgacacataaacagaaaaaa---aaaactacaatgaattgtgatcatttcttaag-aaaagtatgagaggagtgtcataggagc
i calJac3.chr15                C 0 I 2
s mm10.chr6                     45773337 275 - 149736546 -GGTGGTAGGAAATAAGAATGTTTCCAATAACAAAGTAGAATCTTAATAAAAATGCAG-CCCCAATAATGCT-----------------------------ATGCTTC-------------CTAAGTTACAAA-TCTGTCGCA----GGGTTTATGCATTATCTGAAGCAATATTGCCTCCACTGGAGTGAACCTAGGA----TAACAGGGATGTGATACAATCCCTTC--TTTA--GTCTAGTAGAGGAAAGCTCAGCACACAGAG-ACAAGCACAGAGGTACAATGCATTGTGGTCA-TTCTCAAT-AGAGATATGCT-AGAGCACCACAGGTC-
i mm10.chr6                    C 0 I 1
s canFam3.chr20                 16602446 299 +  58134056 AGGTGGGAGTGAATAAAAATATTTCTATTAACAAAGTCTAAGGGTAA--------CAGACTTaaaaaaaaaaagaaagaaaagaaaaaaacaaaaaCCAGGAAACATTCACTTACATTGGGCTAAATAATAAAATCAGTTGCACACTGTTTTTATAAATTCATTGGACTAACAGAGTCTCCTCTGGACTAAACCTGGAA----TA------GCA-AGTACCACCTG---AGTTTGCAGTCTAAGGGAGGAC-------CAAAGGAGG-GGAAA---AAAAGCAAAATTGGT----AAAAGTTCTCAAGTAGAAGTATCAT-GGAGGGTAATAGAAGA
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727152 363 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5005.000000
s hg38.chr14_KI270725v1_random      3892 1 +    172810 a
s panTro4.chr3                 201676064 1 - 202329955 a
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655570 1 + 202140232 a
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585391 1 +  86207423 a
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842196 1 + 192599291 a
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998196 1 - 192460366 a
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557814 1 + 187378091 A
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493821 1 - 101219884 a
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055927 1 -  98464013 a
i calJac3.chr15                I 2 C 0
s saiBol1.JH378125              27727515 1 +  27742158 a
i saiBol1.JH378125             I 363 I 235
s canFam3.chr20                 16602745 1 +  58134056 A
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45773612 1 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=353697.000000
s hg38.chr14_KI270725v1_random      3893  99 +    172810 -gagtagga-------gcagcacttgagatttgagaagatcctca----aagaagagtttag-cccatgtattgaaagataagtgggaatttgtcaatgagaggtgaaagaa-
s panTro4.chr3                 201676065  99 - 202329955 -gagtagga-------gcagcacttgagatttgagaagatcctca----aagaagagtttag-cccatgtattgaaagataagtgggaatttgtcaatgagaggtgaaagaa-
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655571  99 + 202140232 -gagtagga-------gcagcacttgagatttgagaagatcctca----aagaatagtttag-cccatgttttgaaagataactgggaatttgtcagtgagaggtgaaagaa-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585392  99 +  86207423 -gagtagga-------gcagcacttgaggtttgagaagatcctca----aagaagagtttag-accatgtattgaaagataagtgggaatttgtcagtgagaggtgaaagaa-
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842197 102 + 192599291 -gagtagga-------gcagcacttgagatttgagaagatcctcaaag-aagaagagtttag-cccatgtattgaaagataagtgggaatttgtcattgagaggtgaaagga-
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998197 102 - 192460366 -gagtagga-------gcagcacttgagatttgagaagatcctcaaag-aagaagagtttag-cccatgtattgaaaggtaagtgggaatttgtcattgagaggtgaaagga-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557815 102 + 187378091 -GAGTAGGA-------GCAGCACTTGAGATTTGAGAAGATCCTCAAAG-AAGAAGAGTTTAG-CCCATGTATTGAAAGATAAGTGGGAATTTGTCATTGAGAGGTGAAAGGA-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493822 102 - 101219884 -gagtagga-------gcagcacttgagatttgagaagatcctcaaag-aagaagagtttag-cccatgtattgaaagataagtgggaatttgtcattgagaggttaaagga-
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46055928 102 -  98464013 -gagtagga-------gtagcacttgagattggagaaggtcctcaagg-aagaggagtttag-cccatgtattgaaagataagtagaaatttgtcattgagaggtaaaagaa-
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45773613 108 - 149736546 ----GAGGACACCTTGGCTGTATTTGGCTGTGGAGAAACTGGTAAAAGAAAGACAAGTTGGGTTTCATGGATTGAAAGATGAATGGAAATGTGACATCCACAGAAGAAAGAA-
i mm10.chr6                    I 1 I 148
s canFam3.chr20                 16602746 104 +  58134056 ACAGTAGGA-------AGAGCACTTCAGGTTTGAGAAAGATTGTAAGG-AAGAGAAGTTTGG-CTCAGGTATTAAAAGATAAGTAGGGATCTGCCACCAAAAGGTTGGAATAA
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727516 235 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=494069.000000
s hg38.chr14_KI270725v1_random      3992 134 +    172810 ggcattctgtgcaTATCTGT---GATTTCCC---AATGGCTAAGATATGAAGTACTTGCAAGAATGAAGAAGAGTGATGATTAGAGAGTTTAAAAACAACTTGGATTCATATTATATGTCTTGGTAAAAAATTGATTTTT
s panTro4.chr3                 201676164 134 - 202329955 ggcattctgtgcaTATCTGT---GATTTCCC---AATGGCTAAGATATGAACTACTTGCAAGAATGAAGAAGAGTGATGATTAGAGAGTTTAAAAACAACTTGGATTCATATTATATGTCTTGGTAAAAATTTGATTTTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655670 134 + 202140232 ggcattctgtgcaTATCCGT---GATTTCCC---AATGGCTAAGATATGAACTACTTGCAAGAATGAAGAAGAGTGATGATTAGAGAGTTTAAAAACAATTTGGATTCATATTATATGTCTTGGTAAAAATTTGATTTTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585491 134 +  86207423 ggcattctgtgcaTATCTGT---GATTTCCC---AATGGCTAAGATATGAACTACTTGCAACAATGAAGAAGAGTGATGATTAGAGACTTTAAAAACAATTTGGATTCATATTATATGTCTTGGTAAAAATTTGATTTTT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842299 134 + 192599291 ggCATTCTGTCCATATTCGT---GATTTCCC---AATGGCTAAGATATGAACTACTTGAAAGAATGAAGAAGAGTGATGATTAGAGAGTTTAAAAACAATTTGGATTTATATTATATATATTGGTAAAAATTTGATTTTT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998299 134 - 192460366 ggCATTCTGTCCATATTCGT---GATTTCCC---AATGGCTAAGATATGAACTACTTGAAAGAATGAAGAAGAGTGATGATTAGAGAGTTTAAAAACAATTTGGATTTATATTATATATATTGGTAAAAATTTGATTTTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59557917 134 + 187378091 GGCATTCTGTCCATATTTGT---GATTTCCC---AATGGCTAAGATATGAACTATttgaaagaatgaagaagagTGATGATTAGAGAGTTTAAAAACAATTTggatttatattatatatattggtaaaaatttgattttt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64493924 134 - 101219884 ggCATTCTGTCCATATTTGT---GATTTCCC---AATGGCTAAGATATGAACTACTTGAAAGAATGAAGAAGAGTGATGATTAGAGAGTTTAAAAACAATTTGGATTTATATTATATATATAGGTAAAAATTTGATTTTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056030 134 -  98464013 ggcattctgtgcacatctgt---gaattccc---agtggctaagatatgaactacTTGCAAGAATGAAGAAGGGTGATGATTACAGAGTTTAAAAACAATTTGGATTTATATTATGGGTCTCGGTAAAAGTTTGATTTTT
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45773869 136 - 149736546 GACATCCCATCCATATCTGC---AAGCGACTAAGAATGGCTGAGATAACAACCACTTGTATAAATAAAAAGGATTGATATCTA-AGAAAGTAAATTTATTTTGGACTTGCATTCTGTGCACTGATAAAACTTTGTATGTT
i mm10.chr6                    I 148 C 0
s canFam3.chr20                 16602850 135 +  58134056 GGAATTCCATGCATACCTGTGAGGATTTCAG---AATGGCTAAGATATAAACTACTTGTAAGAATTAAGAGGAATGATACTTAAGGAAGTTAAAAATGATCTGCATTAACA-TGTATGCTTTGGTAAGAGTCTGGATTT-
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727516 235 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1826.000000
s hg38.chr14_KI270725v1_random      4126 1 +    172810 A
s panTro4.chr3                 201676298 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655804 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585625 1 +  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842433 1 + 192599291 G
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998433 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558051 1 + 187378091 g
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494058 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056164 1 -  98464013 A
i calJac3.chr15                C 0 C 0
s saiBol1.JH378125              27727751 1 +  27742158 A
i saiBol1.JH378125             I 235 I 162
s mm10.chr6                     45774005 1 - 149736546 G
i mm10.chr6                    C 0 I 1
s canFam3.chr20                 16602985 1 +  58134056 A
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=374386.000000
s hg38.chr14_KI270725v1_random      4127 109 +    172810 TCTCTCTTGGTCTTG-GGAATCAGTAGAAGCCTTTATTTTTTT-CCCTTGAATA----AGATTTTATTTTGAAATAGTTTAAGATAAACAAGTTTTTAAAATAGTACAGAGGTTC
s panTro4.chr3                 201676299 110 - 202329955 TCTCTCTTGGTCTTG-GGAATCAGTAGAAGCCTTTATTTTTTTTCCCTTGAATA----AGAttttattttgaaatagtttaagataaacaagtttttaaaacagtacagagattc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655805 110 + 202140232 TCTCTCTTGGCCTTGAGGAATCAGTAGAAGCCTTTATTTTTTT-CCCTTGAATA----AGAttttattttgaaatagtttaagataaacaagtttttaaaatagtacagagattc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585626 109 +  86207423 TCTCTCTTGGCCTTGAGGAATCAGTAGAAGCCTTTATTTTTT--CCCTTGAATA----AGAttttactttgaaatagtttaagataaacaagtttttaaaatagtacagagattc
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842434 109 + 192599291 TCTCTCTTGGCCTTGAGGAATCAGTAGAAGCCTTTATTTTTT--CCCTTGAATA----AGAttttattttgaaatagtttaagataaacaagtttttaaaatagtacagagattc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998434 109 - 192460366 TCTCTCTTGGCCTTGAGGAATCAGTAGAAGCCTTTGTTTTTT--CCCTTGAATA----AGAttttattttgaaatagtttaagataaacaagtttttaaaatagtacagagattc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558052 108 + 187378091 tcTCTCTTGGCCTTGAGGAATCAGTAGAagcctttatttttt--cccttgaata----agatttta-tttgaaatagtttaagataaacaagtttttaaaatagtacaGAGATTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494059 109 - 101219884 TCTCTCTTGGCCTTGAGGAATCAGTAGAAGCCTTTATTTTTT--CCCTTGAATA----AGAttttattttgaaatagtttaagataaacaagtttttaaaatagtacagagattc
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056165 106 -  98464013 TCTCTCTTGGCCTTGAGGAATCAGGAGAAGGCT---TTTCCC--CCtttgaata----agattttattttaaaatagtgtaggataaacaagttcataaaataatacagagattc
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45774007  94 - 149736546 CCATGATTGGTCATGAGGAATCATTATAAGC-------------CTCTTAAAAGATACATATTACAATTTGAAGTAGCTTAAAAGA--------TTAACAAAAGAACAAAggtcc
i mm10.chr6                    I 1 I 1335
s canFam3.chr20                 16602986 107 +  58134056 CCTCTCTGCACCTTGAGGAATCAGAAGCCTCCCTCATCTTTTTTTTTTTTAATA----G---TTTATTTTGAATTAGCTAAAGATGAACAAGT-TTTGAAATAGTACAGAGATTC
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727752 162 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=143357.000000
s hg38.chr14_KI270725v1_random      4236 54 +    172810 CCAAAGAAACT-TGTAAGCAAAGAAGTTCatccaaacc-aaaaaattgatacaggt---
s panTro4.chr3                 201676409 54 - 202329955 ccaaagaaact-tgtaagcaaagaagttcatccaaacc-aaaaaactgatataggt---
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655915 54 + 202140232 ccaaagaaact-tgtaagcaaagaagttcatccaaacc-aaaaaattgatataggt---
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585735 54 +  86207423 ccAAAGAAACT-TGTAAGCAAAGAAGttcatccaaacc-aaaaaattgatataggt---
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842543 56 + 192599291 ccaaagaacctctgtaagcaaagaagttcatgcaaaccaaaaaaattgatataggt---
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998543 56 - 192460366 ccaaagaacctctgtaagcaaagaagttcatgcaaaccaaaaaaattgatataggt---
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558160 56 + 187378091 CCAAAGAACCTCTGTAAGCAAAGAAGTTCATGCAAACCaaaaaaaTTGATATAGGT---
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494168 56 - 101219884 ccaaagaacctctgtaagcaaagaagttcatacagaccaaaaaaattgatataggt---
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056271 54 -  98464013 ccaaataacctctgtaagcaaagaaattcattcaaacc--aaaaatcgatataggt---
i calJac3.chr15                C 0 I 3
s canFam3.chr20                 16603093 52 +  58134056 -CTATGTACCTGTCTTATCAAAAAAA-----AAAaaac-agaaaattaactttcataca
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45774101 1335 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727752 162 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=8790.000000
s hg38.chr14_KI270725v1_random      4290 2 +    172810 at
s panTro4.chr3                 201676463 2 - 202329955 at
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655969 2 + 202140232 at
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585789 2 +  86207423 at
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842599 2 + 192599291 at
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998599 2 - 192460366 at
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558216 2 + 187378091 AT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494224 2 - 101219884 at
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056328 2 -  98464013 ac
i calJac3.chr15                I 3 C 0
s saiBol1.JH378125              27727914 2 +  27742158 at
i saiBol1.JH378125             I 162 I 311
s canFam3.chr20                 16603145 2 +  58134056 at
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45774101 1335 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=489397.000000
s hg38.chr14_KI270725v1_random      4292 154 +    172810 gctattaactagactacagatcatactgtgatttcatctactttt-cAGTCATCTTTTCTTCCCTTAgtatatagttctat-agattccatgacatatatagattagtgta----------tcactacaatcaagatagagtac----tgttctatcaacataaagaaat
s panTro4.chr3                 201676465 154 - 202329955 gctattaactagactacagatcatactgtgatttcatctactttt-cAGTCATCTTTTCTTCCCTTAgtatatagttctat-aaattccatgacatatatagattggtgta----------tcactacaatcaagatagagtac----tgttctatcaacataaagaaat
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69655971 154 + 202140232 gctattaactagactacagatcgtattgtgatttcatctactttt-cAGTCATCTTTTCTTCCCTTAgtatatagttctat-aaattccatgacatatatagattagcgta----------tcactacaatcaagacagagtac----tgttctatcaccatgaagaaat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585791 154 +  86207423 actattaactagactacagatcgtattgtgatttcatctactttt-cagtcatctttccttcccttagtatatagttctat-aaattccatgacatacatagattagtgta----------tcactacaatcaagatagagtac----tattctatcaccataaagaaat
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842601 154 + 192599291 actattaactagactacagatcatattgtgattccatctactttt-cAGTCAACTTTTCCTCCCTTAgtatatagttctat-aaattccatgacaaatatagattagtgta----------tcactacaataaggatagagtac----cgtgatatcaccataaagaaat
i rheMac3.chr2                 C 0 I 7
s macFas5.chr2                  60998601 154 - 192460366 actattaactagactacagatcatattgtgattccatctactttt-cAGTCAACTTTTCCTCCCTTAgtatatagttctat-aaattccatgacaaatatagattagtgta----------tcactacaataaagatagagtac----cgtgatatcaccataaagaaat
i macFas5.chr2                 C 0 I 7
s papAnu2.chr2                  59558218 154 + 187378091 ACTATTAACTAGACTACAGATCATATTGTGATTCCATCTACTTTT-CAGTCAACTTTTCCTCCCTTAGTATATAGTTCTAT-AAATTCCATGACAAATATAGATTAGTGTA----------TCACTACAATAAGGATAGAGTAC----CGTGATATCACCATAAAGAAAt
i papAnu2.chr2                 C 0 I 302
s chlSab2.chr22                 64494226 154 - 101219884 actattaactagactacagatcatattgtgattccatctactttt-cAGTCAACTTTTCCTCCCTTAgtatatagttctat-aacatccatgacaaatatagattagtgta----------tcactacaatcaggatagagtac----tgtgatatcaccataaagaaat
i chlSab2.chr22                C 0 I 7
s calJac3.chr15                 46056330 151 -  98464013 actattaactagactacagatggtattgtgatttcatctactttt-cagtcatattttcttctc--agtgtatagtgctat-aaattctataatgtatatagattagggta----------tcactacaatcaggatagagtac----cgttctttcaccataaaaaaa-
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16603147 167 +  58134056 gctattaattagactgcagaccttattcagatttcatcagcttttacaggaa---tttcttccctcactgtatagttctttgaaatactttcacacatacatattcataaaaaacaggtagtcaccacaatcagtatacagaactgtttgttctatcatcataaagaaac
i canFam3.chr20                C 0 I 9
e mm10.chr6                     45774101 1335 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727916 311 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=4095.000000
s hg38.chr14_KI270725v1_random      4446 1 +    172810 t
s panTro4.chr3                 201676619 1 - 202329955 t
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656125 1 + 202140232 t
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585945 1 +  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842762 1 + 192599291 t
i rheMac3.chr2                 I 7 C 0
s macFas5.chr2                  60998762 1 - 192460366 t
i macFas5.chr2                 I 7 C 0
s papAnu2.chr2                  59558674 1 + 187378091 t
i papAnu2.chr2                 I 302 C 0
s chlSab2.chr22                 64494387 1 - 101219884 t
i chlSab2.chr22                I 7 C 0
s calJac3.chr15                 46056481 1 -  98464013 t
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16603323 1 +  58134056 t
i canFam3.chr20                I 9 C 0
e mm10.chr6                     45774101 1335 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727916 311 +  27742158 I
e tarSyr2.KE939134v1              174447 4561 +    958716 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=28140.000000
s hg38.chr14_KI270725v1_random      4447 7 +    172810 tattttt
s panTro4.chr3                 201676620 7 - 202329955 tatcttt
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656126 7 + 202140232 tatcttt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585946 7 +  86207423 tatcttt
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842763 7 + 192599291 tatcttt
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998763 7 - 192460366 tatcttt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558675 7 + 187378091 tatCTTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494388 7 - 101219884 tatcttt
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056482 7 -  98464013 tatcttt
i calJac3.chr15                C 0 C 0
s tarSyr2.KE939134v1              179008 5 +    958716 --ccttt
i tarSyr2.KE939134v1           I 4561 N 0
s canFam3.chr20                 16603324 7 +  58134056 tatccct
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45774101 1335 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727916 311 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=64451.000000
s hg38.chr14_KI270725v1_random      4454 19 +    172810 taatagtcacaaccctcca
s panTro4.chr3                 201676627 19 - 202329955 taatagtcacaaccctcca
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656133 19 + 202140232 taatagtcacaaccctcca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585953 19 +  86207423 taatagtcacaaccttccg
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842770 19 + 192599291 taatagtcacaaccttcca
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998770 19 - 192460366 taatagtcacaaccttcca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558682 19 + 187378091 TAATAGTCACAACCTTCCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494395 19 - 101219884 taatagtcacaaccttcca
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056489 19 -  98464013 taatggtcacaaccttcca
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16603331 17 +  58134056 taataattacacctctc--
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45774101 1335 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727916 311 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=444828.000000
s hg38.chr14_KI270725v1_random      4473 129 +    172810 cttcctcatacca-taacccctaataaccactgatctgttctccatccctacat-ttcatcatatttaggcttttaaataaatagaatcacacagtaagtaaccttttgagat--------aggc-ttttttccca------ctta
s panTro4.chr3                 201676646 129 - 202329955 cttcctcatacca-taacccctaataaccactgatctgttctccatcactacat-ttcatcatatttaggcttttaaataaatagaatcacacagtaagtaaccttttgagat--------aggc-ttttttccca------ctta
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656152 129 + 202140232 cttcctcatacca-taacccctaataaccactgatctgttctccatcactacat-ttcatcatatttaggcttttatataaatagaatcacacagtaagtaacattttgagat--------aggc-ttttttccca------ctta
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67585972 129 +  86207423 cttcctcatacca-taacccctaataaccactgatgttttctccgtcactacat-ttcatcatatttaggcttttatataaatagaatcatacagtaagtaaccttttgagat--------aggc-ttttttccca------ctta
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842789 129 + 192599291 cttcctcatacca-taatccttaataaccactgatctgttctccatcactatac-ttcatcatatttaggcttttatataaatagaatcatacagtaagtaacctttagagat--------aggc-ttttttccca------cttg
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998789 129 - 192460366 cttcctcatacca-taatccttaataaccactgatctgttctccatcactatac-ttcatcatatttaggcttttatataaatagaatcatacagtaagtaaccttttgagat--------aggc-ttttttccca------cttg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558701 128 + 187378091 CTTCCTCATACCA-TAATCCTTAAtaaccactgatctgttctccatCACTATAC-TTCATCATATTTAGgcttttatataaatagaatcatacagtaagtAACCTTTTGAGAT--------AGGC--TTTTTCCCA------CTTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494414 129 - 101219884 cttcctcatacca-taatccttaataaccactgatctgttctccatcactatac-ttcatcatatttagactttcatataaatagaatcatacagtaagtaaccttttgagat--------aggc-ttttttccca------cttg
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056508 129 -  98464013 cttcctcatacta-taacccctaataaaaactgatctgttctccatcactacac-ttaatcatatttagggttttatataaatagactcatacagtaagtaacctattgagat--------aggc-ttttttaccc------cttg
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45775436 141 - 149736546 ccccccccaacca-cagtccc-agcaaccacccttctattct-tatcaccacaagtttgctatactgagactgtcaca-gagtggaatcatatgttaaatagacttgttagattaaaggtaaggt-atatttaacataaaattttg
i mm10.chr6                    I 1335 C 0
s canFam3.chr20                 16603348 126 +  58134056 cctcacaaaaccattaatatctagcaatcactgatcagttctccatcactacag-ttt-tcattttgaaactt--atataaatgga--catataggaagtaagcttttgagac--------tggctttttttttca------ctta
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27727916 311 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=13200.000000
s hg38.chr14_KI270725v1_random      4602 2 +    172810 gc
s panTro4.chr3                 201676775 2 - 202329955 gc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656281 2 + 202140232 gc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67586101 2 +  86207423 gc
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842918 2 + 192599291 gc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998918 2 - 192460366 gc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558829 2 + 187378091 GC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494543 2 - 101219884 gc
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056637 2 -  98464013 gc
i calJac3.chr15                C 0 C 0
s saiBol1.JH378125              27728227 2 +  27742158 gc
i saiBol1.JH378125             I 311 I 49
s mm10.chr6                     45775577 2 - 149736546 gc
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16603474 2 +  58134056 gc
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=133511.000000
s hg38.chr14_KI270725v1_random      4604 43 +    172810 ctcaatatatattcaagttattgtgtctattaatagcttattc
s panTro4.chr3                 201676777 43 - 202329955 ctcaatatatattcaagttattgtgtctattaatagcttattc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656283 43 + 202140232 ctcaatatatattcaagttattgcgtctattaatagcttattc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67586103 43 +  86207423 ctcaatatatattcaagttattgtgtctattaatagcttattc
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842920 43 + 192599291 ctcaatatatattcaagttattgtgtctattaatagcttgttc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998920 43 - 192460366 ctcaatatatattcaagttattgtgtctattaatagcttgttc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558831 43 + 187378091 CTCAATATATATTCAAGTTATTGTGTCTATTAATagcttgttc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494545 43 - 101219884 ctcaatatatattcaagttattgtgtctattaatagtttgttc
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056639 31 -  98464013 ------------acaagttattgtgtctattaatagtttgttc
i calJac3.chr15                C 0 I 1
s mm10.chr6                     45775579 33 - 149736546 --------ttcttcta--tgttgtatattttagcagtttattc
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16603476 34 +  58134056 ----ata-atgcctaagtcatagtgtgtatcagtagttc----
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27728229 49 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=4664.000000
s hg38.chr14_KI270725v1_random      4647 1 +    172810 t
s panTro4.chr3                 201676820 1 - 202329955 t
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656326 1 + 202140232 t
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67586146 1 +  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842963 1 + 192599291 t
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998963 1 - 192460366 t
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558874 1 + 187378091 t
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494588 1 - 101219884 t
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056671 1 -  98464013 t
i calJac3.chr15                I 1 C 0
s saiBol1.JH378125              27728278 1 +  27742158 t
i saiBol1.JH378125             I 49 I 600
s mm10.chr6                     45775612 1 - 149736546 t
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16603510 1 +  58134056 c
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=2218914.000000
s hg38.chr14_KI270725v1_random      4648 609 +    172810 ttttcatttctgagtagtattctgttgtaatgatgtaccacagtttgtttattcattcattcattgaacgacaattgagtttttccagattagggctattacaaataaagttcctatgcattttagtgttctggtt-ttt-cgtgaatgt-aagtttccatttctctgagataaacactaaagattgtgatttatatgtcatgtgataaagatatggttaactttataaaagactgccaaactgtttttcagaataaatgtatcgatttacattctcaccaccaatgcaggagagatccagttgttccacatatttaccagcacttgatattgtcagcatggttttacttttcccattctattaagtgtatagtg--------gcatgttattgtagctttactttgcttttctctaatagctaatgatattgcatcAAAAACCTTTTAAACCTTTAAAAATGATATTATGATATAATGGGTAGGTAACTTTGGGAACTATGTAGAGAATTTAATGAGATGTCCAGGAATGAAagactaaggaacaactgagagtagggacacaagtcaggatgttcagctataggccagagaatagataaagtttgcctgaagtaaagt
s panTro4.chr3                 201676821 609 - 202329955 ttttcatttctgagtagtattctgttgtaatgatgtaccacagtttgcttattcgttcattcattgaacgacaattgagtttttccagattagggctattacaaataaagttcctatgcattttagtgttctggtt-ttt-cgtgaatgt-aagtttccatttctctgagataaacactaaagattgtgatttctatgtcatgtgataaagatatggttaactttataaaagactgccaaactgcttttcagaataaatgtatcgatttacattcccaccaccaatgcaggagagatccagttgttccacatatttatcagcacttgatattgtcagcatggttttacttttcccattctagtaagtgtatagcg--------gcatgttattgtagctttactttgcttttctctaatagctaatgatattgcatcAAAAACCTTTTAAACCTTTAAAAATGATATTATGATATAATGGGTAGGTAACTTTGGGAACTATGTAGAGAATGTAACGAGATGTCCAGGAATGAAagactaaggaacaactgagagtagggacacaagtcaggatgttcagctataggccagagaatagatgaagtttgcctgaagtaaagt
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656327 609 + 202140232 ttttcatttctgagtagtattctgttgtaatgatgtaccacagtttgtttattcattcattcattgaaggacaattgggtttttccagattagggctattacaaataaagttcctatgcattttagtgttctggtt-ttt-cgtgaatgt-aagtttccatttctctgagataaacactaaagattgtgatttctatgtcatgtgataaagatatggttaactttataaaagactgccaaactgtttttcagaataaatgtatcgatttacattcccaccaccaatgcaggagagatccagttgttccacatatttatcagaacttgatattgtcagcatggttttacttttcccattctattaagtgtatagtg--------gcatgttattgtagctttactttgtttttctctaatggttaatgatattgcatcAAAAACCTTTTAAACCTTTAAAAATGATATGATGATATAATGGGTAGGTAACTTTGGGAACTATGTAGAGAATTTAATGAGATGTCCAGGAATGAAAGATTAAGGAACAACtgagagtagggacacaagtcaggatgttcagctataagccagagaatagataaagtttgcctgaagtgaagt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67586147 609 +  86207423 ttttcatttctgaatagtattctgtcgttatgatgtaccacagtttgtttattcattcattcattgaaggacaattgagtttttccagattagggctattacaaattaagttcctatgcattttagtgttctggtt-ttt-tgtgaatgt-aagtttccatttctctgagataaacactaaagattgtgatttctatgtcatgtgataaagatatggttaactttataaaagactgccaaagtgtttttcagaatatatgtatcgatttacattcccaccaccaatgcaggagaaatccagttgttccacatatttaccagcactctatattgtcagcatggttttacttttcccattctagtaagtgtatagtg--------gcatgttattgtagctttactttgcttttctctaatggctaatgatattgcatcAAAAACCTTTCAAACCTTTAAAAATGATATGATGATATAATGGGTAGGTAACTTCGGGAACTATGTAGAGAATTTAATGAGATGTCCAGGAATGAAAGATTCAGGAACAACtgagagtagggacacaagtcaggatgttcagctataggccagagaatagataaagtttgcctgaagtaaagt
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61842964 607 + 192599291 ttttcatttctgagtagtattctgttgtaatgatgaa--acagtttgtttattcattcattcactgaaggacagttggatttttccagattaaggctatcacaaataaagtttctatgcatttctgtgttctggtt-ttt-cgtgaatgt-aagtttccatttctctgagatcaacactcaagattgtgatttctgtgtcatgtgataaagatatggttaactttataaaagactgccaaactgttttttagaataaatgtattgatttacattcccaccaccaaagcaagagagatccagttgttccacatatttaccagcacttgatattgtcggcatggttttacttttcccattctagtaagtatatagtg--------gcatgttattgtagctttattttgcttttctctaatggctaatgatattgcatcACAAACCTTTTAAACCTATAAAAATGATATGATGATATAATGGGTAGGTAACTTTGGGAACTATGTAGAGAATTTAATGAGATGCCCAGGAATGAAAGATTAAGGAACAACtgagagtagggacacaagtcaggatgttcagctataggccagagaatagataaagtttgcctgaagtaaagt
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60998964 609 - 192460366 ttttcatttctgagtagtattctgttgtaatgatgtaccacagtttgtttattcattcattcactgaaggacagttggatttttccagattaaggctattacaaataaagtttctatgcatttctgtgttctggtt-ttt-cgtgaatgt-aagtttccatttctctgagatcaacactcaagattgtgatttctgtgtcatgtgataaagatatggttaactttataaaagactgccaaactgttttttagaataaatgtattgatttacattcccaccaccaaagtaagagagatccagttgttccacatatttaccagcacttgatattgtcggcatggttttacttttcccattctagtaagtatatagtg--------gcatgttattgtagctttattttgcttttctctaatggctaatgatattgcatcACAAACCTTTTAAACCTATAAAAATGATATGATGATATAATGGGTAGGTAACTTTGGGAACTATGTAGAGAATTTAATGAGATGCCCAGGAATGAAAGATTAAGGAACAACtgagagtagggacacaagtcaggatgttcagctataggccagagaatagataaagtttgcctgaagtaaagt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59558875 609 + 187378091 ttttcatttctgagtagtattctgttgtaatgatgtaccacagtttgtttattcattcattcactgaaggACAGTTGGATTTTTCCAGATTaaggctattacaaataaagtttctaTGCATTTCTGTGTTCTGGTT-TTT-CGTGAATgt-aagtttccatttctctgagaTCAACACTCAAGATTGTGATTTCTGTGTCATGTGATAAAGATATGGTTAACTTTATAAAagactgccaaactgttttttagaataaatgtattgatttacattcccaccaccaaaGCAAGAGAGATCCAGTTGTTCCACATATTTACCAGCACTTGATATTGTCAGCATGGTTTTACTTTTCCCATTCTAGTAAGTATATAGTG--------GCATGTTATTGtagctttattttgcttttctctaatggctaatgatattGCATCAAAAACCTTTTAAACCTATAAAAATGATATGATGATATAATGGGTAGGTAACTTTGGGAACTATGTAGAGAATTTAATGAGATGCCCAGGAATGAAAGATTAAGGAACAACTGAGAGTAGGGACACAAGTCAGGATGTTCAGCTATAGGCCAGAGAATAGATAAAGTTTGCCTGAAGTAAAGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64494589 609 - 101219884 ttttcatttctgagtagtattctgttgtaatgatgtaccacagtttgtttattcattcattcactgaaggacagttggatttttccagattaaggctattacaaataaagtttctatgcatttctgtgttctggtt-ttt-cgtgaatgt-aagtttccatttctctgagatcaacactcaagattgtgatttctgtgtcatgtgataaagatatggttaactttataaaagactgccaaactgttttttagaataaatgtattgatttacattcccaccaccaaagcaagagagatccagttgttccacatatttaccagcacttgatattgtcagcatggttttacttttcccattctagtaagtgtatagtg--------gcacgttattgtagctttattttgcttttctctaatggctaatgatattgcatcAAAAACCTTTTAAACCTATAAAAATGATATGATGATATAATGGGTAGGTAACTTTGGGAACTATGTAGAGAATTTAATGAGATGCCCAGGAATGAAAGATTAAGGAACAACtgagagtagggacacaagtcaggatattcaactataggccagagactagataaagtttgcctgaagtaaagt
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46056672 599 -  98464013 ttttcatttctgagtagtattctgctgtaatgatgtaccacagtttgtttattcattcatttattgaaggccagttgggtttttccagattggggctattacaaatacagttcctaagcattttagtgttctgtttattg-catgaatat-aagtttccatttttctgagataaacattcaaggttgttgtttctgtgt-atgtgataaagatatcattaaccttataaaagactgccaagatgtttttcagaataaatgtatcgatttacattcccactaccaatgcaggagagatccagttgttccacatacttaccagcacttgatattgtcagcatggttttacttttgccattcttgttagtgtatactt--------gcatgttattgtagctttacttcacttttctctaatggct----aTATTGCATCAAAAACTGTTT--ACCTATAAAAATGATGTAATGATATAATGGGTAGGTAACTCTGGGAATTATGTAGAGAATTGAATGAGATGTCCAGGGATAGAAGATTAAGGAACAACTGAGAATAGGGATACAAGTCAGGATGTTCAGATATAGGCCAGAGA----ATAAAGTTTAGCTGAAATAAAGT
i calJac3.chr15                C 0 I 4
s mm10.chr6                     45775613 589 - 149736546 ctttgatgcccacatagtattatattgtagtgatg-------gttcactt---------ttcaatgaaagacagttctgtagttctggcttagagctattacaaatagagctttaaagatatt---tgtccatgtt-ttt-cacaaaaacaaaagatatagttctctgagataaatactcaggaacttgattgttatgcaattcaataaccagatggctaaatttataaaactatggcaaactattttcaataacatattcctc-atttatattctatttatcaaaataagagtggtgcgattgtcccacccccttgccatcacttggtattgtcaa-agaattctcattttCTCTCTGTAGTAACTGAATGCTGCAGTATCAGCATGCTACTCTTACTTTAATTT-CATTTCTGAAATGGGTAATGATCCTGCACTGAAAATCTTTC-TGTCTATGATTATGGTGTCATGATACAATGAGCAGGT-ACCAAGGGACTTATGCAAAAGTTAAAATGAAATGCATAGAGATAGAAGGCTAAGATAAAATTGAGTTGATGG---CAAAT-AAACTGTT-AGATACCTTCAAAGTCTTAAATAGAGATTATTGAAAATATAAC
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16603511 570 +  58134056 tttttattgttaagaagtattctgttgtcatgatgtgacacagtttacct----attcacccactgaatgcaaattctgttgtttcagtttggggctg---------------ctatgaatttttgtgtacaggtt-tttgcgtgaatgt-aagttt-tatttcttt-agataaatacccaagggtataactgct-tgtcat-tggtcaatgtattattaactttgtagaagactgccaaactatttttcagaatggatgtgtcagcttacattcccaccagcaacacagaggagattccactgtttcacatccttgccagcacttggtattgccagtatg-------tctttccattctaataaatgtgtagca--------gtatgttattgtgggtttaatttgcatttccctaatagctagtgaGCTTGCATTGGAAGCCTTT----------AATGTGATGTCACAATATAAAGGAAAAGTAACTTGGGGAACTATGTAGATAATAGAATGAAATATCCAGGGATGTAAGGTTAAGGAAGAACAGAGGATGGGGAGATAAGTCAGGATGATCAGATATAGTCCAGGTAAAAGATAAAAGTTACCGAAAAGAAAGC
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27728279 600 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=11937.000000
s hg38.chr14_KI270725v1_random      5257 4 +    172810 attg
s panTro4.chr3                 201677430 4 - 202329955 attg
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656936 4 + 202140232 attg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67586756 4 +  86207423 attg
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61843571 4 + 192599291 atag
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60999573 4 - 192460366 atag
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59559484 4 + 187378091 ATAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495198 4 - 101219884 atag
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46057275 4 -  98464013 ATTG
i calJac3.chr15                I 4 C 0
s saiBol1.JH378125              27728879 4 +  27742158 ATTG
i saiBol1.JH378125             I 600 I 549
s mm10.chr6                     45776202 4 - 149736546 ACCA
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16604081 4 +  58134056 ATTT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=61688.000000
s hg38.chr14_KI270725v1_random      5261 15 +    172810 acaaaaggcaaggag
s panTro4.chr3                 201677434 15 - 202329955 acaaaaggcaaggag
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656940 15 + 202140232 acaaaaggcaaggag
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67586760 15 +  86207423 acaaaaggcaaggag
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61843575 15 + 192599291 acaaaaggcaaggag
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60999577 15 - 192460366 acaaaaggcaaagag
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59559488 15 + 187378091 ACAAAAGGCAAGGAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495202 15 - 101219884 acaaaaggcaaggag
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46057279 15 -  98464013 ACAAAGGGCAAGGAG
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45776206 11 - 149736546 ACAAAAGGTAA----
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16604085 15 +  58134056 ACTAAGGGCAAAGAG
i canFam3.chr20                C 0 I 190
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27728883 549 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=950541.000000
s hg38.chr14_KI270725v1_random      5276 294 +    172810 acgagaggagaggttggatttgagaagcatttggaagtcgattcaaaaggatttaatgaacagtttattgtgggaatgaaaaaaggaagttgtccatgtcaattcttaggttttaagcttcaaaaaagtatgtagataatggctatagtaatcaaaattaagaataatagag-ggaaata--gttt-gaagagaggaaatgataga----tatttttggccatattaaaactgaggtatctacaggacataccaaAATATCTAACTCAG----------TAGG-AAAAATATTATTCAGAAAGGACATTTGG-T
s panTro4.chr3                 201677449 294 - 202329955 acgagaggagaggttggatttgagaagcatttggaagtcgattccaaaggatttaatgaacagtttattgtgggaatgaaaaaaggaagttgtccatgtcagttcttaggttttaagcttcaaaaaagtatgtagataatggctatagtaatcaaaattaagaataacagag-ggaaata--gttt-gaagagaggaaatgataga----tatttttggccatattaaaattgaggtatctacaggacataccaaAATATCTAACTGAG----------TAGG-AAAAATATTATTCAGAAAGGACATTTGG-T
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69656955 294 + 202140232 acgagaggagaggttggatttgagaagcatttggaagtcgattcaaaaggatttaatgaacagtttattatgggaatgaaaaaaggaagttgtcaatggcaattcttaggttttaagcttcaaaaaagtatgtagataatggctatagtaatcaaaattaagaataatagag-ggaaata--gttt-gaagagaggaaatgataga----tatttttggccatattaaaactgaagtatctacaagacataccaaAATATCTAACTGAG----------TAGG-AAAAATATTATTCAGAAAGGACATTTGG-T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67586775 293 +  86207423 acgagaggagaggttagatttgagaagcatttggaagttgattcaaaaggatttaatgaacagtttattgtgggaatgaaaaaaggaagttgtcaatggcaattcttaggttttaagcttcaaaaaagtatgtagat-atggctatagtaatcaaaattaagaataatagag-ggaaata--gttt-gaagagaggaaatgataga----tatttttggccatattaaaattgaggtatccacaggacataccaaAATATCTAACTGAG----------TAGG-AAAAATATTATTCAGAAAGGACATTTGG-T
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61843590 298 + 192599291 acgagaggagaggttggatttgagaagaatttggaagtcgattcaataggatttaatgaagagtttattgttggaatggaaaaaggaagttgtcaatggcaattcttaggttttaagcttcaaaaaagtatgtagat-atgactatagcaatcaaaattaagaataatagag-gaaaatg--gttt-ggagagaggaaatgatagagaggtatttttggccatattaaaattgaggtatctaaagaacataccaaaatatctgattgag----------tagg-AAAAATATTATTCAAAAAGGACATTTGGTT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60999592 298 - 192460366 acgagaggagaggttggatttgagaagaatttggaagtcgattcaataggatttaatgaagagtttattgttggaatggaaaaaggaagttgtcaatggcaattcttaggttttaagcttcaaaaaagtatgtagat-atgactatagcaatcaaaattaagaataatagag-gaaaatg--gttt-ggagagaggaaatgatagagaggtatttttggccatattaaaattgaggtatctaaagaacataccaaaatatctgattgag----------tagg-AAAAATATTATTCAAAAAGGACATTTGGTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59559503 298 + 187378091 ACGAGAGGAGAGGTTGGATTTGAGAAGAATTTGGAAGTCGATTCAATAGGATTTAATGAAGAGTTTATTGTTGGAATGGAAAAAGGAAGTTGTCAATGGCAATTCTTAGGTTTTAAGCTTCAAAAAAGTATGTAGAT-ATGACTATAGCaatcaaaattaagaataataGAG-GAAAATG--GTTT-GGAGAGAGGAAATGATAGAGAGGTATTTTTGGCCATATTAAAATTGAGGTATCTAAAGAACATACCAAAATATCTGATTGAG----------Tagg-aaaaatattattcaaaaaggACATTTGGTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495217 298 - 101219884 acgagaggagaggttggatttgagaagaatttggaagtcgattcaataggatttaatgaagagtttattgttggaatggaaaaaggaagttgtcaatggcaattcttaggttttaagcttcaaaaaagtatgtagat-atgactatagcaatcaaaattaagaataatagag-gaaaatg--gttt-ggagagaggaaatgatagagaggtatttttggccatattaaaattgcggtatctaaagaacataccaaAATATCTAATTGAG----------TAGG-AAAAATATTATTCAAAAAGGACATTTGGTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46057294 294 -  98464013 ACGAGAGGAGAGTTTGGATTTGAGAGGCATTTGGAAGTCAATTTAAAAGGATTTCATAATCAGTTTATTGTGAGAATGTAAAAA-GAAGTTTTCAATAGTAATTCTTAGGGTTTAAGCTTCAAAAGAGCATGTAGAT-ATGGATATAGCAATCAAAATTTAAAATAATAGAG-AAAAAAACTGTTT-GGAGAGAGGAAATGATAGA----TATTTTTGGCTATACTAAAATTGAGGTATCTACAGGACATATCAAAATACCTAACTGAG----------TAGGAAAAAATATTATTCAAAAA-GACATTTGG-T
i calJac3.chr15                C 0 I 2
s mm10.chr6                     45776217 234 - 149736546 -----AGGAGA---CAGATTTGATAAGCA-TTGAAAGTAGGGTCAAATGCATGTGCTAAACAATTAATTACATCAGTAATCAAAGGGAAGAATCAGTG-----------------AGCC----AAAGGTGAGAAACT--TG--------AATTAAAA-TACATACAGTAGAG-------A--TCTT-GGACAGAAAAAGGCATTGG---------------------------AAATATATAAGGAACAATAAACTCTGTCTAACTCAGGCTAATTATATGGA-GAGAATAGCACTTAAAATAAGCACCTGC-T
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16604290 275 +  58134056 AAGAGAGAAGAGATAAGATTTGAGAAGTATTTGAAAGTAGACTCAAAAAGAT---------------TTGTGGGAATGAGTAACAGAAACAGTCAATGGTAACTC----GTTTTAAGCTGGAAATA-----GTGGAT-ACAGATATAGTAA-CAAAATTAAAAATAATGGAGGGAAAACA--GTTTGGGAAAGAGAGAGATTTGGAGAGACTTTTTTGGCCATATTGAAATTGAGGTATCTATAGAGGATACCAAAATATTTGGCTGAG----------TGGGGAGAAACATTACTCCAAATGAACATTTGG-T
i canFam3.chr20                I 190 I 1
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27728883 549 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=4095.000000
s hg38.chr14_KI270725v1_random      5570 1 +    172810 T
s panTro4.chr3                 201677743 1 - 202329955 T
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657249 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587068 1 +  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61843888 1 + 192599291 T
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60999890 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59559801 1 + 187378091 T
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495515 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s mm10.chr6                     45776451 1 - 149736546 T
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16604566 1 +  58134056 T
i canFam3.chr20                I 1 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27728883 549 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46057588 2 -  98464013 I

a score=455568.000000
s hg38.chr14_KI270725v1_random      5571 126 +    172810 TATGAAGAATAAAGACCTATTGGATTAAGTGGAATGTTTTACTTAAAAGTAGTTTCCTACTCTTTTCAGGAATATTATTGGCAATTAATCTTTGACCTCTAAGCCAGTTCACATTAAAAATAAGAC
s panTro4.chr3                 201677744 126 - 202329955 TATGAAGAATAAAGACCTATTGGATTAAGTGGAATGTTTTACTTAGAAGTAGTTCCCTACTCTTTTCAGGAATATTATTGGCAATTAATCTCTGACCTCTAAGCCAGTTCACATTAAAAATAAGAC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657250 126 + 202140232 CATGAAGAATAAAGACCTATTGGATTAAGTGGAATGTTTTACTTAAAATTAGTTTCCTACTCTTTTCAGGAATATTATTGGCAATTAATCTCTGACCTCTAAGCCAGTTCACATTAAAAATAAGAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587069 126 +  86207423 CATGAAGAACAAAGACCTATTGGATTAAGTGGAATGTTTTACTTAAAATTAGTTTCCTACTCTTCTCAGGAATATTATTGGCAATTAATCTCTGACCTCTAAGCCAGTTCACATTAAAAATAAGAC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61843889 126 + 192599291 CATGAAGAACAAAGACCTACTGAATTAAGTGGAAAGTTTTACTTAAAATTAGTTTCCTAGCCCTTTCAGGAATATTATTGGCAATTAATCTCTGACCTGTAAGCCAGTTCACATTAAAAATAAGAC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  60999891 126 - 192460366 CATGAAGAACAAAGACCTATTGAATTAAGTGGAAAGTTTTACTTAAAATTAGTTTCCTAGCCCTTTCAGGAATATTATTGGCAATTAATCTCTGACCTGTAAGCCAGTTCACATTAAAAATAAGAC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59559802 126 + 187378091 CATGAAGAACAAAGACCTATTGAATTAAGCGGAAAGTTTTACTTAAAATTAGTTTCCTAGCCTTTTCAGGAATATTATTGGCAATTAATCTCTGACCTGTAAGCCAGTTCACATTAAAAATAAGAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495516 126 - 101219884 CATGAAGAACAAAGACCTACTGGATTAAGTGGAAAGTTTTACTTAAAACTAGTTTCCTAGCCTTTTCAGGAATATTAATGGCAATTAATCTCTGACCTGTAAGCCAGTTCACATTAAAAATAAGAC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46057590 125 -  98464013 GATGAAGAACAAAGACTTATTGGATTAGGTGGAATG-TTTACTTGAAATTATTTTTTTAGCCTTTTCAGGAATATTATTGGCAATTAATATCTGACCTCTAAGCCAGTTCACATTAAAATTAAGAC
i calJac3.chr15                I 2 C 0
s mm10.chr6                     45776452 121 - 149736546 CATAAAGAACAGAGAACTTGTGAATTAAATGGAACAATTTGCTTGTAAGTATTTT----GTCTTTTTTCAAAATTTGCTAGCAACTGACCTCTGATTTGCAAAAGACTT-ACATTGGAAGTAAGAG
i mm10.chr6                    C 0 I 162
s canFam3.chr20                 16604567 121 +  58134056 CACCAAGAGCAAAGACCCGTTGTAGTAAGTGGGATATTTTGCTTAAAATCACTGTCATAGCTTTTTTAGCGATACTGTTGGCAATTATTT-----CTCTTAGACCAGTTCACACGGAAAGGAAGAC
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27728883 549 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=374979.000000
s hg38.chr14_KI270725v1_random      5697 112 +    172810 --CACACCAAAAGACATTTTAGATTGAGAAACTAATGTGAACAATTCATGGGGAGAAAATTGAAATATGGCAATAGTCTATTGTACAGCTGTCTTGAAGGGGAATTTGAAGGCC
s panTro4.chr3                 201677870 112 - 202329955 --CACGCCAAAAGACATTTTAGATTGAGAAACTAATGTGAACAATTCATGGGGAGAAAATTGAAATATGGCAATAGTCTATTGTACAGCTGTCTTGAAGGGGAATTTGAAGGCC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657376 112 + 202140232 --CACACCAAAAGACATTTTAGGTTGAGAAACTAATGTGAACAATTCATGGGGAGAAAATTGAAATATGGCAATAGTCTACTGTACAGCTGTCTTGAAGGGGAGTTTGAAGGCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587195 112 +  86207423 --CACACCAAAAGACATTTTAGGTTGAGAAACTAATGTGAATAATTCATGGGGAGAAAATTGAAATATGGCAATAGCCTATTGTACAGCTGTCTTGAAGGGGAATTCGAAGGCC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844015 112 + 192599291 --CACACCAAAAGACATTTTTGGTTGAGAAACTCATGTGAATAGTTCATGGGGAGAAAATTGAAATATGGCAATAGCCTATCGTACAGCTGTCTTGAAGGGGAATTTAAAGGCC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000017 112 - 192460366 --CACACCAAAAGACATTTTTGGTTGAGAAACTCATGTGAATAGTTCATGGGGAGAAAATTGAAATATGGCAATAGCCTATCGTACAGCTGTCTTGAAGGGGAATTTAAAGGCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59559928 112 + 187378091 --CACACcaaaagacatttttggttgaGAAACTAATGTGAATAGTTCATGAGGAGAAAATTGAAATATGGCAATAGCCTATCGTACAGCTGTCTTGAAGGGGAATTTAAAGGCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495642 112 - 101219884 --CACACCAAAAGACATTTTAGGTTGAGAAACTAATGTGAATAGTTCATGGGGAGAAAATTGAAATATGGCAATAGCCTATCGTACAGCTGTCTTGAAGGGGAATTTAAAGGCC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46057715 112 -  98464013 --CACACCAAAAGACATTTTAGGCTGAGAAACTAATGTGAATACTTGTTGGGGAGAAAATTGAAATATGGCAATAGCCTATTATACACCCGTCTTAAAGGAAAATTTGAAGGCC
i calJac3.chr15                C 0 I 1
s canFam3.chr20                 16604688 105 +  58134056 AAAATCTCAAAATCCATTTT-GGTTTAGGAGGTGATATGAACCAATCTTAGGGAGAAAATT--------ATAATAGCCTACTATATTGTTACTTTGAAGGGGAATTAGAAAGCC
i canFam3.chr20                C 0 I 1
e mm10.chr6                     45776573 162 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27728883 549 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5005.000000
s hg38.chr14_KI270725v1_random      5809 1 +    172810 A
s panTro4.chr3                 201677982 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657488 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587307 1 +  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844127 1 + 192599291 A
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000129 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560040 1 + 187378091 A
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495754 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46057828 1 -  98464013 A
i calJac3.chr15                I 1 C 0
s saiBol1.JH378125              27729432 1 +  27742158 A
i saiBol1.JH378125             I 549 I 264
s canFam3.chr20                 16604794 1 +  58134056 A
i canFam3.chr20                I 1 C 0
e mm10.chr6                     45776573 162 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=107685.000000
s hg38.chr14_KI270725v1_random      5810 35 +    172810 TAACTGTCGAAGGATTTTCCTAAC-TTACAGAAGCC
s panTro4.chr3                 201677983 35 - 202329955 TAACAGTGGAAGGATTTTCCTAAC-TTACAGAAGCC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657489 35 + 202140232 TAACTATTGAAGGATTTTCCTAAC-TTACAGAAGGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587308 35 +  86207423 TAACTATCGAAGGATTTTCCTAAC-TTACAGAAGCC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844128 35 + 192599291 TAACTATCGAAAGATTTTCCTAAC-TTACAGAAGCC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000130 35 - 192460366 TAACTATTGAAAGATTTTCCTAAC-TTACAGAAGCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560041 35 + 187378091 TAACTATCGAAAGATTTTCCTAAC-TTACAGAAGCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495755 33 - 101219884 TAACTATC--AAGATTTTCCTAAC-TTACAGAAGCC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46057829 35 -  98464013 TAAGTATCCAAGGATTTTCCTCAC-TTACAGAAGCC
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16604795 36 +  58134056 TAATTAATGGAGAGTTTTCCCAAAGTTATAGAAGAC
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45776573 162 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27729433 264 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=466548.000000
s hg38.chr14_KI270725v1_random      5845 168 +    172810 TGTGTACACTACCAGAA--------------------GAAT---TGATGTTTGCAAT--------TCCACCCACTGTGTACTTTTTCATG-ATGAGAGAAATCATTCAGGACAACGCAGTTAGC-AAACCATAACTCAAAATCGATAGACCCCCACC-CCCCGCATTTTTGTTATTTCATGATAAGATAATGGCAATA-TAT-A
s panTro4.chr3                 201678018 168 - 202329955 TGTGTACACTACCAGAA--------------------GAAT---TGATGTTTGCAGT--------TCCACCCACTGTGTACTTTTTCATG-ATCAGAGAAATCATTCAGGACAACGCAGTTAGC-AAACCATAACTCAAAATCGATAGACCCCCACC-CCCCGCATTTTTGTTATTTCATGATAAGATAATGGCAATA-TAT-A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657524 163 + 202140232 TGTGTACACTACCAGAA--------------------AAAT---TGATGTTTGCAAT--------TCCACCCACTGTGTACTTTTTCATG-ATCAGAGAAATCATTCAGGACAACGCAGTTAGC-AAACCATAACTCAAAATCAATAGACCCCCCCC------CACTTTTGTTATTTCATGATAAGATAATGGCAATA-TAT-A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587343 169 +  86207423 TGTGTACACTACCAGAA--------------------GAAT---TGATGTTTGCAAT--------TCCACCCACTGTGTACTTTTTCATT-ATCAGAGAAATCATTCAGGACAACGCAGTTAGC-AAATCATAACTCAAAATCGATAGCCGCCCCCCACCCCGCATTTTTGTTATTTCATGATAAGATAATGGCAATA-TAT-A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844163 165 + 192599291 TGTGTACACTACCAGAA--------------------GAAC---TGATGTTTGCAAT--------TCCACCCACTGTGTACCTCTTCATG-ATTAGAGAAATCATTCAGGACAATGCAGTTAGC-AAATCATAACTCAAAGATGATA----CCCACTTCCCTGCATTTTTGTTATTTCATGATAAGATAATGGCAATA-TAT-G
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000165 165 - 192460366 TGTGTACACTACCAGAA--------------------GAAC---TGATGTTTGCAAT--------TCCACCCACTGTGTACCTCTTCATG-ATTAGAGAAATCATTCAGGACAATGCAGTTAGC-AAATCATAACTCATAGATGATA----CCCACTTCCCTGCATTTTTGTTATTTCATGATAAGATAATGGCAATA-TAT-G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560076 165 + 187378091 TGTGTACACTACCAGAA--------------------GAAC---TTATGTTTGCAAT--------TCCACCCACTGTGTACCTCTTCATG-ATTAGAGTAATCATTCAGGACAATGCAGTTAGC-AAATCATAACTCAAAGATGATA----CCCACTTCCCTGCATTTTTGTTATTTCATGataagataatggcaata-tat-g
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495788 165 - 101219884 TGTGTACACTACCAGAA--------------------GAAC---TGATGTTTGCAAT--------TCCACCCACTGTGTACCTCTTCATG-ATTAGAGAAATCATTCAGGACAATGCAGTTAGC-AAATCATAACTCAAAGATCATA----CCCACTTCCCTGCATTTTTGTTATTTCATGATAAGATAATGGCAATA-TAT-G
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46057864 160 -  98464013 TGTGTACACTGCCTG-----------------------AAT---TGATGTTGTCAAT--------TCCATTCATTGTGTACTTTTTCTTG-ATCACAGAAATCATTCAGGACAATGTAGTTAGC-AAATCATATCTAGAAAATGATAGCC-CCCGCT-----GCATTTTTGTTGTTTTATGATAAGATAATGGCAATA-TAT-A
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45776735 173 - 149736546 TGTGCACAATACTAACAATGCACTGTTGAGTTTTGTGGGGT---TTTTGTTTGTTTTTGTGTTTGTTTcccagttatttgctcctttattcattagggtattggttcacaa----gaagtcacc-tgagtatga-----------------ctcact------ctttgttcacagtccctcctaggagagtggaattagcatca
i mm10.chr6                    I 162 C 0
s canFam3.chr20                 16604831 159 +  58134056 TGGGAACTCTATTAAAA--------------------GAATAGATGACGTTTGCATT--------TCCACTCAC-ATGT-TCTTTTCATG-ATTAGAAGAATCATTTAAGACCACAAATTTAGCAAAATCACACCTCAAAAGCTGTT----GCTACC--ACAGCATTTT------TTCAATGTAAGAAAATGATTTta-tat-a
i canFam3.chr20                C 0 I 196
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27729433 264 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=181223.000000
s hg38.chr14_KI270725v1_random      6013 68 +    172810 AAATAAGCATAA---TACTAATAGTATATA-AACCAT--------AAAGTAAAATGTTTAACATATATTATTTTATTCAA---
s panTro4.chr3                 201678186 68 - 202329955 AAATAAGCATAA---TACTAATAGTATATA-AACCAT--------AAAGTAAAATGTTTAACATATATTATTTTATTCAA---
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657687 68 + 202140232 AAATAAGTGTAA---TACTAATAGTATATA-AACCAT--------AAAGTAAAATGTTTAACATATATTATTTTATTCAA---
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587512 70 +  86207423 AAATAAGTA---------TAATAGTATATA-AACCATAAAGTAAAAAAGTAAAATGTTTAACATATATTATTTTATCCAA---
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844328 68 + 192599291 TAATAAGTATAT---TAATAATAGTATATA-AACCAT--------AAAGTAaaatgtttaacatacattattttatccaa---
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000330 68 - 192460366 TAATAAGTATAT---TAATAATAGTATATA-AACCAT--------AAAGTAAAATGTTTAACATACATTATTTTATCCAA---
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560241 68 + 187378091 taataagtatat---taataatagtatata-aaccat--------aaagtaaaatgtttaacatacattattttatccAA---
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64495953 68 - 101219884 AAATAAGTATAT---TAATAATAGTATATA-AACCAT--------AAAGTAAAATGTTTAACATACATTATTTTATCCAA---
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058024 71 -  98464013 AAATAAGCATAATACTAATAATAGTATACA-AACCAT--------AAAGTAAAATCTTTAACATACATTATTTTATCTAG---
i calJac3.chr15                C 0 I 3
s mm10.chr6                     45776908 63 - 149736546 aaatacaaacag---caccaggcccatccacaacTAT--------GAAGTCAG---------ATACATTGTTTTATCTGCTAA
i mm10.chr6                    C 0 C 0
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27729433 264 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=3133.000000
s hg38.chr14_KI270725v1_random      6081 1 +    172810 C
s panTro4.chr3                 201678254 1 - 202329955 C
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657755 1 + 202140232 C
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587582 1 +  86207423 C
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844396 1 + 192599291 c
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000398 1 - 192460366 C
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560309 1 + 187378091 C
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496021 1 - 101219884 C
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058098 1 -  98464013 T
i calJac3.chr15                I 3 C 0
s saiBol1.JH378125              27729697 1 +  27742158 T
i saiBol1.JH378125             I 264 I 63
s mm10.chr6                     45776971 1 - 149736546 C
i mm10.chr6                    C 0 C 0
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=179153.000000
s hg38.chr14_KI270725v1_random      6082 60 +    172810 CCTAAACATCCTCTATTATAACTTGGTGAGAAAAGCAGTAACATCTCCATGTTAAATATT
s panTro4.chr3                 201678255 60 - 202329955 CCTAAACATCCTCTATTATAACTTGGTGAGAAAAGTAGTAACATCTCCATGTTAAATATT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657756 60 + 202140232 CCTAAACATCCTCTATTATAACTTGGTGAGAAAAGTAGTAACATCTCCATGTTAAATATC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587583 60 +  86207423 CCTAAATATCTTCTATTATAACTTGATGAGAAAAGTAGTAACATCTCCATGTTAAATTCT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844397 60 + 192599291 cctaaacatcctctattataacctggtgagaaaagtagcaacatctccatgttaaatatt
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000399 60 - 192460366 CCTAAACATCCTCTATTATAACCTGGTGAGAAAAGTAGCAACATCTCCATGTTAAATATT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560310 60 + 187378091 CCTAAACATCCTCTATTATAACCTGGTGAGAAAAGTAGCAACAGCTCCatgttaaatatt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496022 60 - 101219884 CCTAAACATCCTCTATTATAACCTGGTGAGAAAAGTAGCAACATCTCCATGTTAAATATT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058099 53 -  98464013 CCTAAACATCCTCTATTATAATTTGGTGAGAAAAGT-------TCTTCATTCTAAATATT
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45776972 55 - 149736546 TCTATATGGCATTCTTTGTAGCTTGGTGGAGAAAATAGTACAGTTTTCTTTTTTG-----
i mm10.chr6                    C 0 C 0
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27729698 63 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=4095.000000
s hg38.chr14_KI270725v1_random      6142 1 +    172810 A
s panTro4.chr3                 201678315 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657816 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587643 1 +  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844457 1 + 192599291 a
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000459 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560370 1 + 187378091 a
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496082 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058152 1 -  98464013 A
i calJac3.chr15                C 0 C 0
s saiBol1.JH378125              27729761 1 +  27742158 A
i saiBol1.JH378125             I 63 I 57
e mm10.chr6                     45777027 0 - 149736546 C
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=161787.000000
s hg38.chr14_KI270725v1_random      6143 55 +    172810 AAGAACCTTAAAACTAGAATAAATGCAAAGAACATGACACGCGGTATGGATGACC---
s panTro4.chr3                 201678316 55 - 202329955 AAGAACCTTAAAACTAGAATAAATGCAAAGAACATGACACGTGGTATGGATGACC---
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657817 55 + 202140232 AAGAACCTTAAAACTAGAATAAATGCAAAGAACATGACACGCGGTTTGGATAACC---
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587644 55 +  86207423 AAGAACCTTCAAACTAGAATAAATGCAAAGAACATGACACGCGGTATGGATGACC---
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844458 55 + 192599291 aagaaactTCAAACTAGAATAAATGCAAAGAACATGACATGCGGTATGGATGATC---
i rheMac3.chr2                 C 0 I 2
s macFas5.chr2                  61000460 55 - 192460366 AAGAAACTTCAAACTAGAATAAATGCAAAGAACATGACATGCGGTATGGATGATC---
i macFas5.chr2                 C 0 I 2
s papAnu2.chr2                  59560371 55 + 187378091 aagaaacttTAAATTAGAATAAATGCAAAGAACATGACATGAGGTATGGatgatc---
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496083 55 - 101219884 AAGAAACTTCAAACTAGAATAAATGCAAAGAACATGACATGTGGTATGGATGATC---
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058153 55 -  98464013 AAAAAACTTAAAACCAGAATAAATGCAAAGAACATGATACATTGTATGGAAAGCC---
i calJac3.chr15                C 0 I 1
s mm10.chr6                     45777027 50 - 149736546 -------TGAAAACCAGAAAAGGTGCAAAAATTATGACA-GAGGGATAGAAAAATATT
i mm10.chr6                    C 0 C 0
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27729762 57 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5546.000000
s hg38.chr14_KI270725v1_random      6198 3 +    172810 TTT
s panTro4.chr3                 201678371 3 - 202329955 TTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657872 3 + 202140232 TTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587699 3 +  86207423 TTT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844515 3 + 192599291 TTT
i rheMac3.chr2                 I 2 C 0
s macFas5.chr2                  61000517 3 - 192460366 TTT
i macFas5.chr2                 I 2 C 0
s papAnu2.chr2                  59560426 3 + 187378091 ttt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496138 3 - 101219884 TTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058209 2 -  98464013 TT-
i calJac3.chr15                I 1 I 1
s saiBol1.JH378125              27729819 2 +  27742158 TT-
i saiBol1.JH378125             I 57 I 152
s mm10.chr6                     45777077 3 - 149736546 TTT
i mm10.chr6                    C 0 C 0
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=498190.000000
s hg38.chr14_KI270725v1_random      6201 149 +    172810 TTTTCTGAAAATAGTTTAAATTCCTTTCCCCTATACCAGTATTAGACTGAGAAATGGAGTCTCTCCTGAGAACCATCTAAGTACTGGTATATCTGCTTGAATCACAAACACATGATTATAAGGCAAATGTAATCCATATCTATGTTGTT
s panTro4.chr3                 201678374 149 - 202329955 TTTTCTGAAAATAGTTTAAATTCCTTTCCCCTATACCAGTATTAGACTGAGAAATGGAGTCTCTCCTGAGAACCATCTAAGTACTGGTATATCTGCTTGCATCACAAACACATGATTATAAGGCAAATGTAATCCATATTTATGTTGTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69657875 149 + 202140232 TTTTCTGAAAATAGTTTAAATTCCTTTCCCCTGTACCAGCATTAGACTGAGAAATGGAGTCTCTCCTGAGAACCATCTAAGTACTGGTATATCTGCTTGAATCATAAACACATGATTATAAGGCAAATGTAATCCATACTTATGTTGTT
i ponAbe2.chr3                 C 0 I 2
s nomLeu3.chr21                 67587702 149 +  86207423 TTTTCTGAAAATAGCTTAAATTCCTTTCGCCTATACCAGTATTAGACTGAGAAATGGAGTCTCTCCTCAGAACCATCTAAGTACTGGTATATCTGCTTGAATCACAAACACATGATTATAAGGCAAATGTAATCCATATTTATGTTGTT
i nomLeu3.chr21                C 0 I 1
s rheMac3.chr2                  61844518 149 + 192599291 TTTTCTGAAAATAGTTTAAATTCCTTTCCTCTATAAGAGTATTAGACTGAGAAATGGAGTCTCTCCTGAGAACCATTTAAGTCCTGGTATATCTGCTTGAATCACAAACACATGAGTATAAGGTAAATGTAATCCATATTTACGTTCTT
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  61000520 149 - 192460366 TTTTCTGAAAATAGTTTAAATTCCTTTCCTCTATAAGAGTATTAGACTGAGAAATGGAGTCTCTCCTGAGAACCATTTAAGTCCTGGTATATCTGCTTGAATCACAAACACATGAGTATAAGGTAAATGTAATCCATATTTACGTTCTT
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59560429 149 + 187378091 ttttctgaaaatagtttAAATTCCTTTCCTCTATACGAGTATTAGACTGAGAAATGGAGTCTCTCCTGAGAACCATCTAAGTCCTAGTATATCTGCTTGAATCACAAACACATGAGTATAAGGCAAATGTAATCCATATTTACGttctt
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64496141 149 - 101219884 TTTTCTGAAAATAGTTTAAATTCCTTTCCTCTATACGAGTATTAGACTGAGAAATGGAGTGTCTCCTGAGAACCATCTAAGTCCTGGTATATCTGCTTGAATCACAAACACACGAGTATAAGGCAAATGTAATCCATATTTATGTTGTT
i chlSab2.chr22                C 0 I 1
s calJac3.chr15                 46058212 148 -  98464013 TTTTCTGAAAATAGTTTAAATTTCTTTCCTTTATATGAGTATTAGACTGCAAAATGGAGTCTCTTTTGAGAACCATCTAAGTCCTGGTATATCTGCTTGACTC-CAAATACATGATTATAAGGTGAACATAATCCATATTTATGTTGTT
i calJac3.chr15                I 1 I 1
s mm10.chr6                     45777080 144 - 149736546 ATTTCTGACAACAGTTGAACTTTCTTCCATCAAAA-----AATATACTGAGCATCCTAATCTAGCCACAGACCCTTCTGAGTCCTGGCAAATCTACTTGAACCACAAACACATGATTAAAGGGCAAATGTAATCCATATTTATGCTTCT
i mm10.chr6                    C 0 I 4
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27729821 152 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5005.000000
s hg38.chr14_KI270725v1_random      6350 1 +    172810 A
s panTro4.chr3                 201678523 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658026 1 + 202140232 A
i ponAbe2.chr3                 I 2 C 0
s nomLeu3.chr21                 67587852 1 +  86207423 A
i nomLeu3.chr21                I 1 C 0
s rheMac3.chr2                  61844668 1 + 192599291 A
i rheMac3.chr2                 I 1 C 0
s macFas5.chr2                  61000670 1 - 192460366 A
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59560579 1 + 187378091 a
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64496291 1 - 101219884 A
i chlSab2.chr22                I 1 C 0
s calJac3.chr15                 46058361 1 -  98464013 A
i calJac3.chr15                I 1 C 0
s saiBol1.JH378125              27729973 1 +  27742158 A
i saiBol1.JH378125             I 152 I 352
s mm10.chr6                     45777228 1 - 149736546 A
i mm10.chr6                    I 4 C 0
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1123145.000000
s hg38.chr14_KI270725v1_random      6351 351 +    172810 AAAAAGATGAAAATCCATAAAGTACTGTGATCATATTTAGAGAATTTTCAATCAAATGATTCTGTCAATTCCTAAATATGCTGATAGCAACAAAGAAACAGATGTTTGGTTTTATTCCATTGCCAGTGATATGGGAAAAAAAAGCTATTAATAAGCATAAATTCTACTAAAGTTGAAAGACATGGAATATTCATATAAATGGAGTACA-TTTTACCACTTTTTATACTCAAGAAAATAAcatgaaaaataactgtacagggtactaggcttaatactcagatagtgaaataatctgcacaacaaactcccatgacacaaatttacctctgcaacgaacctgcacatgcaccc
s panTro4.chr3                 201678524 351 - 202329955 AAAAAGATGAAAATCCATAAAGTACTGTGATCATATTTAGAGAATTTTCAATCAAATGATTCTGTCAATTCCTAAATATGCTGATAGCAACAAAGAAACAGATGTTTGGTTTTATTCCATTGCCAGTGATATAGGAAAAGAAAGCTATTAATAAGCATAAATTCTACTAAAGTTGAAAGACATGGAATATTCATATAAATGGAGTACA-TTTTACCACTTTTTATACTCAAGAAAATAAcatgaaaaataactgtacagggtactaggcttaatacccggatagtgaaataatctgtacaacaaacccccatgacacaagtttacctctgcaacgaacctgcacatgcaccc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658027 350 + 202140232 AAAAAGATGAAAATCCATAAAGTACTGTGATCATATTTAGAGAATTTTCAATCAAATGATTCTGTCAATTCCTAAATATGCTGATAGCAACAAAGAAACAGATGTTTGGTTTTATTCCATTGCCAGTGATATAGGAAAAGAAAGCTATTAATAAGCATAAATTCTACTAAAGTTG-AAGACATGGAATATTCATATAAGTGGAGTACA-TTTTACCACTTTTTATACTCAAGAAAATAAcaagaaaaataactctgcagggtactaagcttaatacccagatagtgaaataatctgtacaacaaactcccacgacacaagtttacctctgcaacgaacctgcacatgcaccc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67587853 351 +  86207423 AAAAAGATTAAAATCCATAAAGTACTGTGATCATATTTAGAGAATTTTCAATCAAATGATTCTGTCAATTCCTAAATATGCTGATAGCAACAAAGAAACAGATGTTTGGTTTTATTCCATTGCCAGTGATATAGGAAAAGAAAGCTATTAATAAGCATAAATTCCACTAAAGTTGAAAGACATGGAATATTCATATAAGTGGAGTACA-TTTTACCACTTTTTATACTCAAGAAAATAAcatgaaaaataactgtacaggctactaggcttaatacccggatagtgaaataatctgtacaacaaactcccacgacacaagtttacctctgcaacgaacctgcacatgcaccc
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61844669 350 + 192599291 AAAAAGATGAAAATCCATAAAATACTGTGATCATATTTAGAGAATTTTCAATCAAATGATTCTGTCAATTCCTAAATATGCT-ATACCAACAAAGAAACAGATGTTTGGTTTTATTCAATTGCCAGTGATATAGGAAAAGAAAGCTATTAATAAGCATAAATTCTACTAAAGTTGAAAGACATGGAATATTCATATAAATGGAGTATA-TTTCACCACTTTTAATACTCAAGAAAATAAcatgaaaaatgactatacaaggtagtaggcttaatacctgggtagtgccataatctgtacaacaaacgcccactacacaagcttacctctgcaatgaacctgcacatgcaccc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61000671 350 - 192460366 AAAAAGATGAAAATCCATAAAGTACTGTGATCATATTTAGAGAATTTTCAATCAAATGATTCTGTCAATTCCTAAATATGCT-ATACCAACAAAGAAACAGATGTTTGGTTTTATTCAATTGCCAGTGATATAGGAAAAGAAAGCTATTAATAAGCATAAATTCTACTAAAGTTGAAAGACATGGAATATTCTTATAAATGGAGTATA-TTTCACCACTTTTAATACTCAAGAAAATAAcatgaaaaatgactatacaaggtagtaggcttaatacctgggtagtgccataatctgtacaacaaacgcccactacacaagcttacctctgcaatgaacctgcacatgcaccc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560580 350 + 187378091 aaaaagatgaaaatccaTAAAGTACTGTGATCATATTTAGAGAATTTTCAATCAAATGATTCTGTCAATTCCTAAATATGCT-ATACCAACAAAGAAACAGATGTTTGGTTTTATTCAATTGCCAGTGATATAGGAAAAGAAAGCTATTAATAAGCATAAATTCTACTAAAGTTGAAAGACATGGAATATTCATATAAATGAAGTATA-TTTCACCACTTTTAATACTcaagaaaataacatgaaaaatgaCTATACAAGGtagtaggcttaatacctgggtagtgccataatctgtacaacaaacgcCCACTACACAAGCTTACCTCTGCAAtgaacctgcacatgcaccc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496292 350 - 101219884 AAAAAGATGAAAATCCATAAAGTACTGTGATCATATTTAGAGAATTTTCAATCAAATGATTCTATCAATTCCTAAATATGCT-ATAGCAACAAAGAAACAGATGTTTGGTTTTATTCAATTGCCAGTGATACAGGAAAAGAAAGCTATTAATAAGCATAAATTCTACCAAAGTTGAAAGACATGGAATATTCATATAAATGGAGTATA-TTTCACCACTTTTGATACTTAAGAAAATAAcatgaaaaatgactatacaaggtagtaggcttaatacctgggtagtgacataatctgtaaaacagatgcccactacacaagcttgcctctgcattgaacctgcacatgcaccc
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058362 351 -  98464013 AAAAAGATGAAAATCCATAAAGCACTGTTATCATATTTAGAGAATTTTCAATCAAATGATTCTGTCAATTCCTAAATATGCTGACAGCAACAAAGAGACAGATGTTTGGTTTTATTCCATTGCCAGCGATATAGGAAAAGAAAGCTATTAATAAGCATAAATTCTACTAAAGTTGAAAGACATGGAATATTCATATAAATGGAGTACGTTTTTACCACTTTTTATACTCAAGAAAATAATATgaaaaataattatacagagcactaggcttattacttgggta-tgtaataatctttacaacgaactcccaatacacaagttcacttctgcaacaaacctgcacaggtaccc
i calJac3.chr15                C 0 I 1
s mm10.chr6                     45777229 252 - 149736546 AAAAAGATGAAAATCTATAAAGCACTGTGATCATATTTAGAAAATTTTCAATCAAACCGTTCTGCCAATTCCTAAATGCGCTGATACCAGCAAAGAAACAGATGTCTCATTGCATTCCTCTGCCAAGGCTG-GGGAGAAGAAAACTGTTCCTAAGCAGAAATTCTGCTGTGCTTGAAAGCTATGGCACACTCAAACAAGTG------A-GTTCCCTACTGTCTAAACTCAAG----TAAGATGGAA----------------------CTCAA---ATGGGGACTGTCA---------------------------------------------------------------
i mm10.chr6                    C 0 C 0
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27729974 352 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=2395.000000
s hg38.chr14_KI270725v1_random      6702 1 +    172810 c
s panTro4.chr3                 201678875 1 - 202329955 c
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658377 1 + 202140232 c
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67588204 1 +  86207423 c
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845019 1 + 192599291 c
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001021 1 - 192460366 c
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560930 1 + 187378091 c
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496642 1 - 101219884 c
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058714 1 -  98464013 t
i calJac3.chr15                I 1 C 0
s saiBol1.JH378125              27730326 1 +  27742158 t
i saiBol1.JH378125             I 352 I 2460
e mm10.chr6                     45777481 0 - 149736546 C
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=313094.000000
s hg38.chr14_KI270725v1_random      6703 131 +    172810 aaacttaaaataa--aaattaaaaaagaaaaAAATAGTTATATAGTAAAGAAAAAGTAGTAAGTGTCAGCGGGAGACTTCAAA------------------------------------ATTATGAACAAAGTAAAAGAGGAACGAGGGTGGGGTGTCAGATCTAAATA
s panTro4.chr3                 201678876 131 - 202329955 aaacctaaaataa--aaattaaaaaagaaaaAAATAGTTATATAGTAAAGAAAAAGTAGTAAGTGTCAGTGGGAGACTTCAAA------------------------------------ATTATGAACAAAGTAAAAGAGGAACGAGGGTGGGGTGTCAGATCTAAATA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658378 128 + 202140232 aaacttaaaataa--aaattaaaaaaaaaaaA---AGTTATATAGTAAAGAAAAAATAGTAAGTTTCAGTGGGAGACTTCAAA------------------------------------ATTATGAACAAAGTAAAAGAGGAACGAGGGTGGGATGTCAGATCTAAATA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67588205 130 +  86207423 aaacttaaaataa--aaattaaaaaagaaCAA-ATAGTTATACAGTAAAGAAAAAGTAGTAAGTGTCAGTGGGAGACTTCAAA------------------------------------ATTATGAACAAAGTAAAAGAGGAACGAGGGTGGGATGTCAGATCTGaata
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845020 136 + 192599291 aaacttaaaacaa--aagttaaaaaagaaaaAAATAGTTATATAATAAAG------------------------------AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACAAA-TAAAAGAGGAACAAAGATGGGATGTCAGATCCAAATA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001022 125 - 192460366 aaactt-----aa--aagttaaaaaagaaaaAAATAGTTATATAATAAAGAAAAAGTAATAAGTGTCAGTGAGAGACTTCAAA------------------------------------ATTATTAACAAA-TAAAAGAGGAACAAAGATGGGATGTCAGATCCAAATA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59560931 130 + 187378091 aaacttaaaacaa--aagttaaaaaagaaaaaaatagttatataataaagaaaaagtaataagtGTCAGTGAGAGACTtcaaa------------------------------------attattaacaaa-taaaagaGGAACAAAGGTGGGATGTCAGATCcaaata
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496643 128 - 101219884 aaacttaaaacaa--aagttaaaaaagaaaaAAATAGTTATATAGTAAAGAAAAAGTAGTAAGTGTCAGTGAGAGACC--AAA------------------------------------ATTATTAACAAA-TAAAGGAGGAACAAAGATGGGATGTCAGATCCAAATA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058715 126 -  98464013 aaacttaaaataattaagttaaaaaa-------aTAGTCACATAGTAGAGAAAAAATAATAAGTGTCAGTGAAAGATTTCAAA------------------------------------AATATTAACAAAGTAAAAGAGAAACAAGGCTGGCATGTCAGATCCAAATA
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45777481 112 - 149736546 ------GAAAGAA--AAA--AAAAAACATAGAAATAATTATATGTCTAAG--AAAGTAATGAATATCAGTGAGAG-TTCAGAA------------------------------------ATTATTAATGACATAAAAATTGG--------GAGAGATCAGATCCAAACA
i mm10.chr6                    C 0 I 265
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=249314.000000
s hg38.chr14_KI270725v1_random      6834 100 +    172810 AAAGAAATACAAAAAATAATA-AAG-AAACAACAAAATTTGCCAAAAATATCCATACTAGAGAAACTACTTTTTT-AATAATCATGAAAAAAGCATGATTata
s panTro4.chr3                 201679007 100 - 202329955 AAAGAAATACAAAAAATAATA-AAG-AAACAACAAAATTTGCCAAAAATATCCATACTAGAGAAACTACTTTTTA-AATAATCATGAAAAAAGCATGATTATA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658506 100 + 202140232 AAAGAAATACAAAAAATAATA-AAG-AAACAACAAAATTTGCCAAAAATATCCATACCAGAGAAACTACTTTTTT-AATAATCATGAAAAAAACATGATTATA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67588335  99 +  86207423 aaagaaatacaaaaaataata-aag-aaacaacaaaaTTTGCCAAAAA-ATCCATACTAGAGAAACTACTTTTTT-AATAATCATGAAAAAAGCATGATTATA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845156  99 + 192599291 AAACAAACACAAAAAATAATC-AAA-AATAAACAAAATTTGCCAAAAATATCCATACTAGAGAAACTACTTTTTT-AATAATCATGAAAAAAGTA-GATTAAA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001147  99 - 192460366 AAACAAACACAAAAAATAATC-AAA-AATAAACAAAATTTGCCAAAAATATCCATACTAGAGAAACTACTTTTTT-AATAATCATGAAAAAAGTA-GATTAAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59561061 100 + 187378091 aaacaaacccaaaaaataatcaaaa-aataaacaaaatctgccaaaaatATCCATACTAGAGAAACTACTTTTTT-AACAATCATGaaaaaagca-gattaaa
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496771  96 - 101219884 AAACAAACAC-AAAAATAATC-AAA-AATAAACAAAATTTGCCAAAAATATCCATACTAGAGAA---ACTTTTTT-AATAATCATGAAAAAAGCATGATTAAA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058841 102 -  98464013 AAACAAACACAAAAAATAATA-AAGCAATCAACAAAATTTTTCTAAAATATTCACCCTAGACAAACTACTTTTTTGAATAACCACATAAAAAGCATGATTAAA
i calJac3.chr15                C 0 C 0
e mm10.chr6                     45777593 265 - 149736546 I
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=427543.000000
s hg38.chr14_KI270725v1_random      6934 142 +    172810 taaataaaag-aaaaaagcaatgactactaaaa--tagaatataaaacaataaaGAAAACCTGTAGTAAACTAAGAAATTGTTGAGAAAAATATTATTGGTATTTTCAAAAGGCAAAATTGAAGTGGCAGTATTAAAAAAGGGTT
s panTro4.chr3                 201679107 142 - 202329955 TAAATAAAAG-AAAAAAGCAATGACTACTAAAA--TAGAATATAAAACAATAAAGAAAACCTGTAGTAAACTAAGAAATTGTTGAGAAAAATATTATTGGTATTTTCAAAAGGCAAAATTGAAGTGGCAGTATTAAAAAAGGGTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658606 143 + 202140232 TAAATAAAAGAAAAAAAGCAATGACTACTAAAA--TAGAATATAAAACAATAAAGAAAACCTGTAGTAAACTAAGAAATTGTTGAGAAAAATATTATTGGTATTTTCAAAAGGCAAAATTGAAGTGGCAATATTAAAAAAGGGTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67588434 139 +  86207423 TAAATAAAAGAAAAAAAGCAATGACTACTAAAA--TAGAATATAAAAC----AAGAAAGCCTGTAGTAAACTAAGAAATTGTTGAGAAAAATATTACTGGTGTTTTTGAAAGGCAAAATTGAAGTGACAGTATTAAAAAAGGGTT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845255 138 + 192599291 TAAATAAAAG-----AATAAATGACTACTAAAA--TAGAATATAAAACAATAAAGAAAGCCTGTAGTAAACTAAGGAATTGTTGAGAAAAATATTATTGGTATTTTCAAAAGGCAAAATTGAAGTGGCAGGATTAAAAAAGGGTT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001246 138 - 192460366 TAAATAAAAG-----AATAAATGACTACTAAAA--TAGAATATAAAACAATAAAGAAAGCCTGTAGTAAACTAAGGAATTGTTGAGAAAAATATTATTGGTATTTTCAAAAGGCAAAATTGAAGTGGCAGGATTAAAAAAGGGTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59561161 138 + 187378091 taaataaaag-----aataaatgactactaaaa--tagaatataaaacaataaagaaagccTGTAGTAAACTAAGGAATTGTTGAGAAAAATATTATTGgtattttcaaaagacaaaattgaagtGGCAGGATTAAAAAAGGGTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64496867 138 - 101219884 TAAATAAAAG-----AATAAATGACTACTAAAA--TAGAATATAAAACAATAAAGAAAGCCTGTAGTAAACTAAGGAATTGTTGAGAAAAATATTATTAGTATTTTCAAAAGGTAAAATTGAAGTGGCAGGATTAAAAAAGGGTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46058943 138 -  98464013 TAAATAAAAG----AAAAAAATGACCACTAAAA--TAGAATATAAAATAATAAAGAAAGCCTGTAGTAAACTAAGAAATTGTTGAGAACGATATTATTGGTATTTTCAAAAGGCAAAATTGAAGTGGCAGGAAT-AAAAAGGGCT
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45777858 138 - 149736546 TAAGTAAAAG-GAAGAAATATTGACTCTGAAAACTCTGAATATGA----TCAAGTAAAACCTGTAATAAACTGAGAAGCTGCACTGAAAACTAACATCAGGA--TCCACACAGACAGAGTGATGTAGCTgggaatgaaaaggctt
i mm10.chr6                    I 265 I 1060
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=31969.000000
s hg38.chr14_KI270725v1_random      7076 11 +    172810 GTTGCACACTG
s panTro4.chr3                 201679249 11 - 202329955 GTTGCACATTG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658749 11 + 202140232 GTTACACATTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67588573 11 +  86207423 GTTACACATTG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845393 11 + 192599291 GTTACACATTG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001384 11 - 192460366 GTTACACATTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59561299 11 + 187378091 GTTAcacattg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64497005 11 - 101219884 GTTACACATTG
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46059081 11 -  98464013 GTTACCCATTA
i calJac3.chr15                C 0 C 0
e mm10.chr6                     45777996 1060 - 149736546 I
e canFam3.chr20                 16604990 196 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=2997.000000
s hg38.chr14_KI270725v1_random      7087 1 +    172810 T
s panTro4.chr3                 201679260 1 - 202329955 T
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658760 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67588584 1 +  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845404 1 + 192599291 T
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001395 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59561310 1 + 187378091 t
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64497016 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46059092 1 -  98464013 C
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16605186 1 +  58134056 T
i canFam3.chr20                I 196 C 0
e mm10.chr6                     45777996 1060 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=409052.000000
s hg38.chr14_KI270725v1_random      7088 115 +    172810 GTATATTTAAAAGGC-AAATTAG--AAAAATGGCTTAATTACCTATG----TAGCTTATTCCTGCAGAAGAAAC----ATACCT------CAAAAATAGAATGGGTCAACTCATGGTTAATAAATACATCAG
s panTro4.chr3                 201679261 115 - 202329955 GTGTATTTAAAAGGC-AAATTAG--AAAAATGGCTTAATTACCTATG----TAGCTTATTCCTGCAGAAGAAAC----ATACCT------CAAAAATAGAATGAGTCAACTCATGGCTAATAAATACATCAG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658761 115 + 202140232 GTATATTTAAAAGGC-AAATTAG--AAAAATGGCTTAATTACCTATG----TAGCTTATTCCTGCAGAAGAAAC----ATACCT------CAAAAACAGAATGAGTCAACTCATGGTTAATAAATACATCAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67588585 115 +  86207423 GTATATTTAAAAGGC-GAATTAG--AAAAATGGCTTAATTACCTATG----TAGCTTATTCCTGCAGAAGAAAC----ACACCT------CAAAAATAGAATGAGTCAATTCATGGTTAATAAATACATCAG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845405 116 + 192599291 GTATATTTAAAAGGC-AAATTAGAAAAAAATGGCCTAATTACCTATG----TAGCTTATTCCTGCAGAAGAAAC----ATACC-------CAAAAATAGAATTAGTCAACTCCTGGTTAATAAATATATCAG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001396 116 - 192460366 GTATATTTAAAAGGC-AAATTAGAAAAAAATGGCCTAATTACCTATG----TAGCTTATTCCTGCAGAAGAAAC----ATACC-------CAAAAATAGAATTAGTCAACTCCTGGTTAATAAATATATCAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59561311 116 + 187378091 gtatatttaaaaggc-aaattagaaaaaaatggccTAATTACCTATG----TAGCTTATTCCTGCAGAAGAAAC----ATACC-------CAAAAATAGAATTAGTCAACTCCTGGTTAATAAATATATCAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64497017 116 - 101219884 GTATATTTAAAAGGC-AAATTAG-AAAAAATGGCTTAATTACCTATG----TAGCTTATTCCTGCAGAAGAAAC----ATACCT------CAAAAATAGAATTAGTCAACTCCTGGTTAATAAATGTATCAG
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46059093 115 -  98464013 GCATATTTAAAAGGC-AAATTAG--AAAAATGGCTTAATTACCGATG----TAGCTTATTCCCGCAGAATAAAC----ATATCT------CAAAAATAGAATGAGTCAACTCCTGGTTGATAAATACATCAG
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45779056 115 - 149736546 GCATATTTATGAAGCTAAATTTG--GAAACTGGCCTAA-TACCTTTATTTTTTTTTTATTTAAGTAGAAGAAAC----TC----------CAAAAATAGGCTGATTTAACTTGTGCTTAGCAAATATAACAG
i mm10.chr6                    I 1060 I 666
s canFam3.chr20                 16605187 124 +  58134056 GTGTATTAGGAGAGC-AAATTGG---GAAATGGCTAAATTAACTATG----TATCTAATTCATGCAAAATAAACTGATAGACCTTAAAAAAAAAAAAAGAATGACTCAACTTGGGGTTAATGAAGGTATCAG
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1283515.000000
s hg38.chr14_KI270725v1_random      7203 429 +    172810 GAGAAACAGGACATTCCAGCAATGAAAGAAACATCATTAAGGAAACAATTGAGGACAAACATCCTGACT-AATGAAAAGCCCAATTCTTTGATATCACACACAGCTCAATTCAGGAATGATATTCC---AAAAAATAATCA--AAGTGCCTTTAGAACTATT-ACCCATGCTTTTACTTTCAGAAGGCATT-------TTGTAGTTACAAAAGAAAGAACAGAGATATTTGTAATTGTATCTATAAGGATGCAAACTGCCCTCTGCCCTAAAATCTTTAATGACAGTACCACTGCTGTAAATATAT-GTAAACATACTTTAGACACATGCAAGTTTTTTGAGGTTATATCAATAACAGGTTT-CATATAACAAACTAAAAATAAG-------------CAAAAAAAA---TGGAAAAAGGGTATGTAACATGCATTTACTATAGTTGACATGC-AAACTTAG
s panTro4.chr3                 201679376 431 - 202329955 GAGAAACAGGACATTCCAGCAATGAAAGAACCATCATTAAGGAAACAATTGAGGACAAACATCCTGACT-AATGAAAAGCCCAATTCTTTGATATCGCACACAGCTCAATTCAGGAATGATATTCC---AAAAAATAATCA--AAGTGCCTTTAGAACTATT-ACCCATGCTTTTACTTTCAGAAGGCATT-------TTGTAGTTACAAAAGAAAGAACAGAGATATTTGTAATTGTATCTATAAGGATGCAAACTGCCCTCTGCCCTAAAATCTTTAATGACAGTACCACTGCTGTAAATATAT-GTAAACATACTTTAGACACACGCAAGTTTTTTGAGGTTATATCAATAACAGGTTT-CATATAACAAACTAAAAATAAG-------------CAAAAAAAA-AATGGAAAAAGGGTATGTAACATGCATTTACTATAGTTGACATGC-AAACTTAG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69658876 431 + 202140232 GAGAAACAGGAAATTCCAGCAATGAAAGAACCATCATTAAGGAAACAATTGAGGACAAACATCCTGACT-AATGAAAAGCACAATTCTTTGATATCGCACACAGCTCAATTCAGGAATGATATTCC----AAAAATAATCA--AAGTGCCTTTAGAACTATT-ACCCATGCTTTTACTTTCAGAAGGCATT-------TTGTAGTTACAAAAGAAAGAACAGAGATATTTGTAATTGTATCTATAAGGATACAAACTGTCCTCTGCCCTAAAATCTTTAATGACAGTACCACTGCTGTAAATATAT-GTAAACATACTTTAGACACATGCAAGTTTTTTGAGGTTATATCAATAACAGGTTT-CATATAACAAACTAAAAATAAG-------------CAAAAAAAAAAATGGAAAAAGGGTATGTAACATGCATTTACTATAGTTGACATGC-AAACTTAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67588700 428 +  86207423 GAGAAACAGGAAATTCCAGCAATGAAAGAACCATCATTAAGGAAACAATTGAGGACAAACATCCTGACT-AATGAAAAGCCCAATTCTTTGATACCACACACAGCTCAATTCAGGAATGATATTCC---AAAAAATAATCA--AAGTGCCTTTAGAACTATT-ACGCATGCTTTTACTTTCAGAAGGCATT-------TTGTAGTTACAAAAGAAAGAACAGAGATATTTGTAACTGTACCTATAAAGATACAAACTGTCCTCTGCCCTAAAATCTTTAATGACAGCACTACTGCTGTAAATATAT-GTAAACATACTTTAGACACATGCAAGTTTTTTGAGGTTATATCAATAATATGTTT-CATATAACAAACTAAAAATAAG-------------CAAAAAAAA---TGGAAAAAGGGTATATAACATGCATTTACTATAGTTGACATG--AAACTTAG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845521 415 + 192599291 GAGAAACACGGAATTCCAGCAATGCAAGAAACATCATTAAGGAAACAATTATGAACAAACACCCTGACT-AATGAAAAGCCCAATTCTTGGATATTGCACACAGCTCAATTCAGGAATGATATTCC---AAAAAATAATCA--AAGTGCCTTTAGACCTATT-GCCCATGTTTTTACTTTCAGAAGGCATT-------TTGTAATTACAAAAGGAAGAACCGATATAT---------------TAAGGATACAAACTGTCCGCTGTCCTAAAATCTTCAATGACAGTACCACTGCTGTAAATATAT-GTAAGCATACTTTAGACACATGCAACTTTTTTGAGGTTATATCAATAACAGGTTT-CATATAACAAACTAAAAATCAG--------------AAAAAAAA-AATGGAAAAAGGGTATGTAACATGCATTTACCATAGTTGACATGC-AAACTTAG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001512 416 - 192460366 GAGAAACACGGAATTCCAGCAATGCAAGAAACATCATTAAGGAAACAATTATGAACAAACACCCTGACT-AATGAAAAGCCCAATTCTTGGATATTGCACACAGCTCAATTCAGGAATGATATTCC---AAAAAATAATCA--AAGTGCCTTTAGACCTATT-GCCCATGTTTTTACTTTCAGAAGGCATT-------TTGTAATTACAAAAGGAAGAACCGAGATAT---------------TAAGGATACAAACTGTCCGCTGTCCTAAAATCTTCAATGACAGTACCACTGCTGTAAATATAT-GTAAGCATACTTTAGACACATGCAACTTTTTTGAGGTTATATCAATAACAGGTTT-CATATAACAAACTAAAAATCAG-------------AAAAAAAAA-AATGGAAAAAGGGTATGTAACATGCATTTACCATAGTTGACATGC-AAACTTAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59561427 422 + 187378091 GAGAAACACGGAATTCCAGCAATGCAAGAAACATCATTAAGGAAACAATTATGAACAAACATCCTGACT-AATGAAAAGCCCAATTCTTGGATATTGCACACAGCTCAATTCAGGAATGATATTCC---AAAAAATAATCA--AAGTGCCTTTAGACCTATT-GCCCATGTTTTTACTTTCACAAGGCATT-------TTGTAATTACAAAAGGAAGAACCAAGATAT---------------TAAGGACACAAATTGTCCGCTGTCCTAAAATCTTCAATGACAGTACCACTGCTGTAAATATAT-GTAAGCATACTTTAGACACATGCAACTTTTTTGAGGTTATATCAATAACAGGTTT-CATATAACAAActaaaaatcagcaa-------aaaaaaaaaaaa-attggaaaaagggTATGTAACATGCATTTACCATAGTTGACATGC-AAACTTAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64497133 429 - 101219884 GAGAAACAGGGAATTCCAGCAATGCAAGAAACATCATTAAGGAAACAATTATGAACAAACATCCTGACT-AATGAAAAGCCCAATTCTTGGATATCGCACACAGCTCAATTCAGGAACGATATTCC---AAAAAATAATCA--AAGTGCCTTTAGACCTATT-GCCCATATTTTTACTTTCAGAAGGCATT-------TTGTAATTACAAAAGGAAGAACGGAGATAT---------------TAAGGATACAAACGGTCCGCTGCCCTAAAATCTTTAATGACAGTACCACTGCTGTAAATGTAT-GTAAGCATACTTTAGACACATGAAACTTTTTTGAGGTTATATCAATAACAGGTTT-CATATAACAAACTAAAAATCAGCaaaaaaaataaaaagaaaaaa-aaaggaaaaagGGTATGTAACATGCATTTACCATACTTGACATGC-AAACTTAG
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46059208 416 -  98464013 GAGAAACAGAAAATTCCAGCAATGCAAGAACCATCATTAA-GAAACAATTGAGGACAAACATCCTGACT-AAAGAAAAACCCAGCTGTTTGATACTGCACACAGCTCAATTCAGGAATGATATTTC---AAAAAATAATTA--AACTGCCTTTAGACCTATTGGGCCATGTTTTTACTTTCTGAAGACATT-------TTGTAATTACAAAAGAAAGAACAAAGATA----------------TAAGGATACAAACTGTCCTTTGCCCTAAAATATTTAGTGACAATAACACGGCTGTAAATTTAT-ATAAACATACTTAAGACACATGCAAGTCTTTTGAGGTTATATCAATAAGGGTTTT-CATATAATGAACTAAAAATAAG-------------CAAAAAAAGAAAAAGAAAAAGGGTATGTAACATACATTTACTATAGTTGAAATGC-AAACTTTG
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16605311 414 +  58134056 -AAGAAAAAAAACTTCTCTCAATGTAGAAACTATAATTAAGGGAAAAAATGACAACAAATATGCTAAATGAGTGGGAGGCTCAGCTGTTTGAAAATGGCCACAGCACCATTCACAAGTGGTATCAGAAAAAAAAAAAATCAACAAGTGCCTTTAGACCTTTT-CACAAAGTTTCCAGTTTTTGAAAGCATTTAAAAAATTACAAGTATAAGGGGGAGTGGTAAGGTAT---------------TAAGGATACAAACTATC--TTGTCCTAAAAGCTTGAATGAGAGTATCACTGTTGAAAATTTGTAAAAAACATACTTTAGTCACAGACAAGTTTGCT---GTTATATGAATAACAACTGTACACCTATGGAACTACAAGTATG-------------TAAAGAGGA---------AAAGTTATGTATCACTCTTT----ATAATGGAAATGCAAAACTTAG
i canFam3.chr20                C 0 I 3
e mm10.chr6                     45779171 666 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=779702.000000
s hg38.chr14_KI270725v1_random      7632 333 +    172810 AGTCCCTGCTTTAAAAAATCAACAATGAggctgggcacggtggctcactcctataatcccagcactttgggaggccaaggtaggcagatcacttgaggtcagcagttcgagaccagcctgtccaatatgttgaaactgcatctccactaa---------------------------------------------------------------------------------------------------aaatacaaaaattagccaggcgtggtggcagggccctgtagtcccagctactcgggaggctgaggcaggag------------------------------------------------------aatcgcttgaacccaggaggcagaggttgcagtgagccgagatcacaccacacgccacta------------------------------------------------------cactccagcctgggtgac--------agagcgagactccatctc------------------caaaaaaaaaaaaaaa
s panTro4.chr3                 201679807 333 - 202329955 AGTCCCTGCTTTAAAAAATCAACAATGAggctgggcgcggtggctcactcctataatcccagcactttgggaggccgaggcaggcagatcacttaaggtcagcagttcgagaccagcctggccaatatgttgaaaccacgtctccactaa---------------------------------------------------------------------------------------------------aaatacaaaaattagccaggcgtggtggcaggggcctgtagtcccagctactcgggaggctgaggcaggag------------------------------------------------------aatcgcttgaacccgggaggcagaggttgcagtgagccgagatcacactacacgccacta------------------------------------------------------cactccagcctgggcgac--------agggcgagactccatctc------------------caaaaaaaaaaaaaaa
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69659307 333 + 202140232 AGTCCCTGCTTTAAAAAATCAACTATGAggctgggcgtggtggctcactcctataatcccagcactttgggaggccaaggcaggcagatcacttgaggtcagcagttcgagaccagcctggccaatatgttgaaaccgcgtctccactaa---------------------------------------------------------------------------------------------------aaatacaaaaattagccaggcgtggtggctggggcctgtagtcccagctactcgggaggctgaggcaggag------------------------------------------------------aatcgcttgaacacgggaggcagaggttgcagtgagccgagatcgcaccacatgccacta------------------------------------------------------cactccagcctgggcgac--------agagcaagactccgtctc------------------caaaaaaaaaaaaaaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67589128 333 +  86207423 AGTCCCTGCTTTAAAAAATCAACTATGAAgctgggtgcggtggctcactcctataatcccagcactttgggaggccgaggcaggcagatcacttgaggtcagcagttcgagaccagcctggccaatatgttgaaaccgcatctctactaa---------------------------------------------------------------------------------------------------aaacacaaaaattagctaggagtggtggcaggggcctgtagtcccagctactcgggaggctgaggcaggag------------------------------------------------------aatcgcttgaacccgggaggcggaggttgcagtgagcggagatcacaccacaagccacta------------------------------------------------------cactccagcctgggtgac--------agagcgagactccgtcta------------------aaaaaagaaaaaaaaa
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61845936 327 + 192599291 AGTCCCAGCTTTAAAAAATCAACTATGAggctgggcgcggtggctcacacctataatcccagcactttgggaggccgaggaaggcagatcacttgaagtcagcagtttgagaccagcctggccaatatgtggaaaccgcatctctactaa---------------------------------------------------------------------------------------------------aaatacaaaaattagccaggcgtggtggcaggggcctgtagtct------------------------gagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncc--------------------------------------------------------aaaaaaaaaaaaaaaa
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61001928 351 - 192460366 AGTCCCAGCTTTAAAAAATCAACTATGAggctgggcgcggtggctcacacctataatcccagcactttgggaggccgaggaaggcagatcacttgaggtcagcagtttgagaccagcctggccaatatgtggaaaccgcatctctactaa---------------------------------------------------------------------------------------------------aaatacaaaaattagccaggcgtggtggcaggggcctgtagtctcagctactcgggaggctgaggcaggag------------------------------------------------------aatcgcttgaacccgggaggcggaggttgcagtgagccgagatcatgccacatgccacta------------------------------------------------------cactccagcctgtgtgac--------agagtaagactccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59561849 329 + 187378091 AGTCCcagctttaaaaaatcaactatgaggctgggcgcggtggctcacacctataatcccagcactttgggaggccgaggaaggcagatcacttgaggtcagcagtttgagaccagcctggccaatatgtggaaaccgcatctctactaa---------------------------------------------------------------------------------------------------aaatacaaaaattagccaggcgtggtggcaggggcctgtagtctcagctactcgggaggctgaggcaggag------------------------------------------------------aatcgcttgaacccgggaggcggaggttgcagtgacccgagatcatgccacatgccgcta------------------------------------------------------cactccagcctgtgcgac--------agagcgagactccacctc----------------------aaaaaaaaaaaa
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64497562 447 - 101219884 AGTCCCAGCTTTAAAAAATCAACTATGAggctgggcgcggtggctcacgcctataatcccagcactttgggaggccgaggaaggcagatcacttgaggtcagcagtttgagaccagcctggccaatatgttgaaaccgcatctctactaaaaatacaaacctgcacattatgcacatgtaccctagaactcaaagtataataataaaaaataaagaaaaaattaaaaaaaattaaaaaaaaataaaaataaatacaaaaattagccaggcgtggtggcaggggcctgtagtctcagctactcgggaggctgaggcaggag------------------------------------------------------aattgcttgaacccaggaggcggaagttgcagtgagccaagatcgtgccacatgccacga------------------------------------------------------cactccagcctgtgcgacagagcgagaGAGCGAGACTCCACCTCCaaaaaa-----------aaaaaaaaaaaaaaaa
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46059624 325 -  98464013 AGTTCCTGCTTTAAAAAATCAACTATGAggccaggtgcagtgacttacgcctgtaaccccagcactttgggaggccaaagcaggtagatcac--aaagtcaggagttggagaccagcctggccaatatggtgaaaccctatctttactaaa--------------------------------------------------------------------------------------------------aaatacaaaaattagctctgcatggttgtgggcaccagtagtcccaactactcagtaggctgaggcaggag------------------------------------------------------aatctcttgaacccagagggcagaagttgcagtgagctgagat-------catgccactg------------------------------------------------------cactccagcctcggagac--------acagcaagactccatctc------------------aaaaaaaaaaaaaaaa
i calJac3.chr15                C 0 C 0
e mm10.chr6                     45779171 666 - 149736546 I
e canFam3.chr20                 16605725   3 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=12285.000000
s hg38.chr14_KI270725v1_random      7965 3 +    172810 aaa
s panTro4.chr3                 201680140 3 - 202329955 aaa
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69659640 3 + 202140232 aaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67589461 3 +  86207423 aaa
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61846263 3 + 192599291 aaa
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61002279 3 - 192460366 aaa
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59562178 3 + 187378091 aaa
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64498009 3 - 101219884 aaa
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46059949 3 -  98464013 aaa
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45779837 3 - 149736546 AAA
i mm10.chr6                    I 666 C 0
e canFam3.chr20                 16605725 3 +  58134056 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=2699229.000000
s hg38.chr14_KI270725v1_random      7968 807 +    172810 aa----------TCAACTATGAAGTTCAACAATTGCAAAATGTTTAATCAAAAG--AGTTTATCAAGAGAATGAAAAAGAATGTAGCTATTAGAATTTATAAAGCTATAAACTATATCAGTATAGAAAAAGATATATTGGAAGAAATAAAACAGTCGGTACTTTTAATGTATTCATTTTTTTCTCCCAATGTATCAAATATTGAATAAAAACATATATGC-------------------ACGAAATATGGTGCTATAATCAAATGGATACTCA-ATAAATACTAT--CAATATATGGCGGCTTGAGGTGAT-AAAAATATACAGACAGGTCAGTTTGGAACCATGCATAAAATTATTTATGAAAAATAGAAGCTCCATATTCATTTATTTAACAAAGATGTATAGACTATGTGCTTAACAAAATAAACACTGAAAG-AAGCCATCTTCATGGAAATACAGGATTATATTGGAAAAAAA---GTCACAATGCTTTCTTTCCTGATTTATTAAGGAA-------------------------AATTACAAAGATT----------------------------TTGGA----CTCAATAAAATATATTTACTTCGTT---------------------AAAAAAACACAAAC---CCATGCATACTAATAAGTAGAGAACCTCGGTTGCTGCTTCTGTTGATTACGGAGACTACTGGGATAAGGCAATCAAAACTAAGAAATAATTTGCCATTCTCTTGGAAGCCAGAGAAAAAGAAAAACACCAgaaacctagccctgg-aatgtcattgaa----tagctgtaggatagtggcaaggatgtcag-catctgtaaca--ctcga-ttttctcttctgcaaaaatgaaactattagtattccaccatattgcaattaatatcacttgagctaatgtat
s panTro4.chr3                 201680143 823 - 202329955 aaaaaaaaaaaaTCAACTATGAAGTTCGACAATTGCAAAATGTTTAATCAAAAG--AGTTTATCAAGAGAATGAAAAAGAATGTAGCTATTAGAATTTATAAAGCTATAAACTATATAGGTATAGAAAAAGATATATTGGAAGAAATAAAACAGTCGGTACTTCTAATGTATTCATTTTTTTCTCCCAATGTATCAAATATTGAATAAAAACGTATATGC-------------------ACGAAATATGGTGCTATAATCAAATGGATACTCA-ATAAATACTAT--CAATATATTGTGGCTTGAGGTGAT-AAAAATATACAGACATGTCAGTTTGGAACCATGCATAAAATTATTTATGAAAAATAGAAGCTCCATATTCATTTATTTAACAAAGATGTACAGACTATGTGCTTAACAAAATAAACACTGAAAG-AAGCCATCTTCATGGAAATACAGGATTATATTGGAAAAAAA-AAGTCACAATGCTTTCTTTCCTGATTTATTAAGGAA-------------------------AATCACAAAGATT----------------------------TTGGAAAGACTCAATAAAATATATTTACTTTGTT---------------------AAAAAAACACAAAC---CTATGCACACTAATAAGGAGAGAACCTCGCTTGCTGCTTCTGTTGATTACGGAGACTACTGGGAGAAGGCAATCAAAACTAAGAAGTAATTTGCCAGTCTCTCGGAAGCCAGAGGAAGAGAAAACCACCAgaaacctagccctgg-aatgtcactgaa----tagctgtaggacagtggcaaggatgtcag-catctgtaaca--ctcga-ttttctcttctgcaaaaatgaaactattagtattccaccatattgcaattaatatcacttgagctaatgtat
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69659643 815 + 202140232 aa---------TTCAACTATGAAGTTCAACAATTGCAAAATGTTTAATCAAAAG--AGTTTATCAAGAGAATGAAAAAGAATGTAGCTATTAGAATTTATAAGGCTATAAACTAAATCAGTATAGAAAAAGATATATTGGAAGAAATAAAACAGTTGGTACTTTTAATGTATTCACTTTTTTCTCCCAATGTATCAAATATTGAATAAAAATATATATGC-------------------AGGAAATATGGTGCTATAATCAAATGGATACTCA-ATAAATACTAT--CAACATATTGCGGCCTGAGGTGAT-AAAAATATACAGACAGGTCAGTTTGGAACCATGCATAAAATTATTTATGAAAAATAGAAGTTCCATATTCATTTATTTAACAAAGATGTATAGACTATGTGCTTAACAAAATAAACACTGAAAG-AAGCCATCTTCATGGAAATACAGGATTATATTGGAAAAAAA-ATGTCACAATGCTTTCTTTCCTGATTTATTAAGGAA-------------------------AATTACAAAGATT----------------------------TTGGAAAGACTCaataaaatatatttatttcatt---------------------aaaaaaataCAAAG---CTATGCATACATATAAGTAGAGAACCTCGGTTGCTGCTTCTGTTGATTACGGAGACTACTGGGATAAGGCAATCAAAACTAAGAAATAATTTGCCAGTCTCTTGGAAGCCAGTGAAAAAGaaaaacaccagaaacctagccctggtaatatcattgaa----tagctgtaggatagtggcaaggacgtcag-catctgtaaca--ctcga-ttttctcttctgcaaaaatgaaactattagtattccaccatattgcaattaatatcacttgagctaatgtat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67589464 815 +  86207423 aa----------TCAGCTACGAAGTTCAACAACTGCAAAATGTTTAATCAAAAG--AGTTTATCAAGAGAATGAAAAAGAATGTAGCTATTAGAATTTATAAGGCTATAAACTATATCAGTATATAAAAAGATATAAAGGAAGAAATAAAACAGTTGGTACCTTTAATGTATTCATTTTTTTCTCCCAATGTATCAAATATTGAAAAAAAATATATATGC-------------------AGAAAATATGGTGCTATAATCAAATGGATACTCA-ATGAATACTAT--CAACATATTGGGGCTTGAGGTGAT-AAAAATATACAGACAGTTCAGTTTGGAACCATGCATAAAATTATTTATGAAAAATAGAAGCTCCATATTCATTTATTTAACAAAGATGTATAGACTATGTGCTTAACAAAATAAACACTGAAAG-AAGCCATCTTCATGGAAATACAGGATTATATTGGAAAAAAAAAAGTCACAATGCTTTCTTTCCTGATTTATTAAGGAA-------------------------AATTACAAAGATT----------------------------TTGGAAAGACTCAGTAAAATATATTTATTTCGTT---------------------AAAAAAATACAAAC---CTATGCGTACTAGTAAGTAGAGAACCTCGGTTGCTGCTTCTGTTGATTACGGAGACTATAGGGAAAAGGCAATCAAAACTAAGAAATAATTTGCCAGTCTCTTGGAAGCCAGAGAAAAAGaaaaacaccagaaacctagccctggtaatatcattgaa----tagctgtaggatagtggcaaggatgtcag-tatctgtaaaa--ctcga-ttttctcttctccaaaagtgaaactattagtattccaccatattgcaattaatatcacttgagctaatgtat
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61846266 841 + 192599291 aa--------aTTCAGCTATGAAGTTCAACAATTGCAAACTGTTTAATTAAAAG--AGTTTATCAAGAGAATGAAATAGAATATAGCTATTAGAATTTATAAGGCTATGAACTACATCAGTATGGAAAAAGATATATTGGAAGAAATAAAACAGTTGGTACTTTTAATGTATTCACTTTTTTCTCCCAATGTATCAAATATTGAATAAAAATATGTATGC-------------------AGGAAATATGATGCTATAATCAAATGGATACTCA-ATAAACACTAT--CAAAATATTGGGGCTCGAGGTGAT-AAAAATATGCTGACAGGTCAGTTTGGGACCACGCATAAAATTATTTATGAAAGAGAGAAGCCCTATATTCATTTATTTAAAAAAGATGAATAGACTATGTGCTTAACAAAATAAAAACTGAGAG-AAGCCAACTTCATGGAAATACAGGATTATATTGGGGGAAAA-AAGGCACAATGTTTTCTTTCCTGATTTATTAAGGAA-------------------------AATTACAAAGATT----------------------------TTGGAAAGACTCAGtaaaatatatttattttattaaaaaaatacatattttatttaaaaaaataCAAAG---CTATGCATACCAACAAGTAGAGAACTTTGGTCGCTGCTTCTGTTGATTACGGAGACTCCTGGGATAAGGCAATCATAATTAAGAAATAATTTGCCAGTCTCTTGGAAGCCAGGGAAAAAGAAAAACACCAGAAACCAAGCCCTGGTAATATCATTGAATAGCTAGCTGTAGGATAGTGGCAAGGATGTCAG-CATCTGTAACA--TTCTA-TTTTCTCTTCTCCAAAAATGAAACGATTAGTATTTCACCATATTGCAATTAGTATCACTTGAGCGAATGTAT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61002282 821 - 192460366 aa--------aTTCAGCTATGAAGTTCAACAATTGCAAACTGTTTAATTAAAAG--AGTTTATCAAGAGAATGAAATAGAATATAGCTATTAGAATTTATAAGGCTATGAACTACATCAGTATGGAAAAAGATATATTGGAAGAAATAAAACAGTTGGTACTTTTAATGTATTCACTTTTTTCTCCCAATGTATCAAATATTGAATAAAAATATGTATGC-------------------AGGAAATATGATGCTATAATCAAATGGATACTCA-ATAAACACTAT--CAAAATATTGGGGCTCGAGGTGAT-AAAAATATGCTGACAGGTCAGTTTGGGACCATGCATAAAATTATTTATGAAAGAGAGAAGCCCTATATTCATTTATTTAAAAAAGATGAATAGACTATGTGCTTAACAAAATAAACACTGAGAG-AAGCCAACTTCATGGAAATACAGGATTATATTGGGGGAAAA-AAGGCACAATGTTTTCTTTCCTGATTTATTAAGGAA-------------------------AATTACAAAGATT----------------------------TTGGAAAGACTCAGTAAAATATATTTATTTTATTA--------------------AAAAAAATACAAAG---CTATGCATACTAACAAGTAGAGAACCTTGGTCGCTGCTTCTGTTGATTACGGAGACTCCTGGGATAAGGCAATCATAATTAAGAAATAATTTGCCAGTCTCTTGGAAGCCAGGGAAAAAGAAAAACACCAGAAACCAAGCCCTGGTAATATCATTGAATAGCTAGCTGTAGGATAGTGGCAAGGATGTCAG-CATCTGTAACA--TTCTA-TTTTCTCTTCTCCAAAAATGAAACGATTAGTATTTCACCATATTGCAATTAGTATCACTTGAGCGAATGTAT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59562181 819 + 187378091 aa--------attcaactatgAAGTTCAACAATTGCAAACTGTTTAATTAAAAG--AATTtatcaagagaatgaaatagaATATAGCTATTAGAATTTATAAGGCTATGAACTACATCAgtatagaaaaagatatattggaagaaataaaacagttgGTACTTTTAATGTATTCACTTTTTTCTCCCAATGTAtcaaatattgaataaaaatatgtatgc-------------------agGAAATATGATGCTATAATCAAATGGATACTCA-ATAAACACTAT--CAAAATATTGGGGCTCGAGGTGAT-AAAAATATGCAGACAGGTCAGCTTGGGACcatgcataaaattatttatgaaagaGAGAAGCcctatattcatttatttaaaaaagatgaaTAGACTATGTGCTTAACAAAATAAACACTGAGAG-AAGCCAACTTCATGGAAATACAGGATTATATTGGGGGAAAA-AC-Gcacaatgttttctttcctgatttattaaggaa-------------------------aattacaaagatt----------------------------TTAGAAAGActcagtaaaatatatttattttatt---------------------aaaaaaatacaaag---ctatGCATACTAACAAGTAGAGAACCTTGGTCGCTGCTTCTGTTGATTACGGAGACTCCTGGGATAAGGCAAtcataattaagaaataatttgccAGTCTCTTGGAagccagggaaaaagaaaaacaccagaaACCAAGCCCTGGTAATATCATTGAATAGCTAGCTGTAGGATAGTGGCAAGGATGTCAG-CATCTGTaaca--ttcta-ttttctcttctccaaaAATGAAACGATTAGTATTTCACCATATTGCAATTAGTATCACTTGAGCGAATGTAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64498012 821 - 101219884 aa--------aaTCAACTATGAAGTTCAACAATTGCAAACTGTTTAATTAAAAG--AGTTTATCAAGAGAATGAAATAGAATGTAGCTATCAGAATTTATAAGGCTATGAGCTACATCAGTATAGAAAAAGATATATTGGAAGAAATAAAACAGTTGGTACTTTTAATGTATTCACTTTTTTCTCCCAATGTATCAAATATTGAATAAAAATATGTATGC-------------------AGGAAATATGGTGCTATAATCAAATGGATACTCA-ATAAGCACTAT--CAAAATATTGGGGCTCAAGGTGATAAAAAATATACAGACATGTCAGTTTGAGACCATGCATAAAATTATTCTTGAAAAATAGAAACCCTATATTCATTTATTTAAAAAAGATAAATAGACTATGTGCTTAACAAAATAAACACTGAAAG-AAGCCAACTTCATGGAAATACAGGATTATATTGGGGAAAAA-AAGGCACGATATTTTCTTTCCTGATTTATTAAGGAA-------------------------AATTACAAAGATT----------------------------TTGGAAAGACTCAGTAAAATATATTTATTTCGTT---------------------AAAAAAATACAAAC---CTATGCATACTAACAAGTAGAGAACCTTAGTTGCTGCTTCTGTTGATTACGGAGACTCCTGGGATAAGGCAATCATAATTAAGAAATAATTTGCCAGTCTCTTGGAAGCCAGGGAAAAAGAAAAACACCAGAAACTTAGCCCTGGTAATATCATTGAATAGCTAGCTGTAGGATAGTGGCAAGGATGTCAG-CATCTGTAACA--TTCTA-TTTTCTCTTCTCCAAAAATGAAACGATTAGTATTTCACCATATTGCAATTTGTATCACTTGAGCTAATGTAT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46059952 812 -  98464013 aa---------aTTAACTATGAAGTTCAACAATTGCAAAATGTTTAATCAAAAG--AGTTTATTAAGAAAATGAAAA--AATGTAGCTATTAGAATAAATAAGGCTATGAACTATATCAGTATAGAAAAAGATATACTGGAAGAAA-AAAACAGTTGGTATTTTAAATGTATTTA--TTTTTCCCCCAATGTACAAAATACTGAATAAAAATATACATGC-------------------AGGAAATATGGTGCTACAATCAAATGGGTACTCA-GTAAATACTAT--CAGAATATTGGGGCTTGAGGTGGT--AAAATATAGAGATAGTTCAGTTTGGGGCCATGCTTTAAATTATTTATGAAAAATAGAAGCCTTATATTCATTTATTTAGCAAAGATATATAGACTGTGAGCTCAGCAAAATAAACACTGAAAG-AAGCCAACTTCATGGAAACACAGAATTATGTTGGGCAAAAA-AAGTCACAATGCTTTTTTACCTGATTTACTAAGGAA-------------------------AATTACCAAGATT----------------------------TTAAAAAGTTTTAGCAAAATATATTTATTTTGTTAG-------------------AAAATAATGAAAAC---CTATGCATACTAATAATTAGAGAACTTCAGTTGCTGTTTCTGTTGATTATGAAGACTCCTGGGATAAAGAAATCAAAAACAAGAAGTGATTTGCCAGTCTCTTGGAAGCCCGAGAGAAAGAAAAATACCAGAATCCTAGCCCTGGTAATATCATTGAA----TAGCTGTAGGATAGTGGCAAGGATGTTAG-CATCTGTAACA--GTAAATTTTTCTCTTATCTAAAAGTGAAACTGTTAATATTCAACCATATTGCAATTAGTATCACTTGATCTAATGTAT
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45779840 753 - 149736546 AA----------CCAACAATAAAGTTCAGCAATGGTAAAATATGTATTGAATG----------TAATGGAAGGAACAAATATGTGCCTATTGAAATGTCCTAGGATTCAGGCTGTATTGGC-CAGATAAAAATG----ACAAGAGATGACATTGT------TTTAAGCATATTTA----TTTCCTCTAA-GTGTCAAA-GTTACATAAAAGAATTAATGC-------------------------------------ATCAAA----TACTTA-TTGAATACTGGTATAAAATATCAAAGCTTAAGGTGAT--AAAATTTACAGGGAAGTCAGTTTACATATAGAAGTTAAATTATTTTTGTATAA-AGAAGACCCACATTCAATTATTTAACAAATGTACATAGAAGGT-TACATAAACAAATGAGCATTGAAAATAAGTTAATTTAATGCAAA-ACAGGCTTACAATTGTCAGTAA-ACATTATCCAGCTTTCTTG---GATTTGCTATAGAA-------------------------ACCCATACCTtttgttttttgtttgtttgtttgtttgtttgtttAACAAGCTCAGCAAAGAGCATTTATTTTGTT---------------------ACAAAAA--------------ACTTGGAAACAAATAACGAGC---AGTTTCTGCTCTTGTTGATTCCTGAGACT--TGAGATATGACAATTAAGGCAAAGAATTCATCCATCAGTTTCTTGTAAAACATAGAGAAGGGGAAACACCAGA------------GCACTACAGCTAAG----AAGCTGTTAGAGAGGGACAGAGGTAGCAGCCACACACCACA-----AA-TACTTTCCTCTTTAATGATAGAAGTATCCTTAGCACACTATATT--------CATCACTTGAATGAGTACAT
i mm10.chr6                    C 0 I 103
s canFam3.chr20                 16605728 838 +  58134056 ----------AATCAACTATGAATTTCAACAAGTGCAAAAGTTTCAAGCAAAAGATAGTTTCCCAGAGGAGTGTAAAAGTATGTCGCTATTAGAATTTATACGTATATGGTCTATATCAACATAGACAAAGATATATCAGAAGAAATAAAATGGTTGCTA-TTTAAGTATATTCA----TTTTTCCCAATGTACAAAGTTTTAAATCACAATATTTATTCAAAAAGTAAGTTGCAAAAAAAAAAGTAAGTTGCTACGGTGAAGTGAATATTTATGTAAGTGCTAT--CAAAATACTGGAGATAGAGATGCT-GCAAATAGACACATAGGCCAATTAGGGACCATGTTCACAGTGACTTAAATACCACAGAGTTCCTATATTCATTCATTTAATAAAGACTTATAGAATGTATGGTAAACAAAGTAAACAGTGAAAATAAGCCGACTTCATGGAAATATAGGATTATGTTGAGCAAAAA-TGGCATGCATGCCTTCTTTCCTCACTCACTGGAAAacacacacacacacatacacacacacaaacacaAAACAG----------------------------TTGGAAAC-CTGAGtaaaatatattcatttta-----------------------aaaataatatGAACCTACTATGCAGACCAATAACTAAGAAAG---AATTGCTGCCTGTTTTGATTATGGAGACTCCTGGAGTAAGGCAATTAAAACTAAGAAATAATTTGGCACCCTGTTGGAAGCCAGAGAGAAAGAAAAACACTACAGACCTAGCCAAGG-----------------TAACTGTGGAATAGTGGTAAGAACATCAG-CATTTGTAACAAACTCAA-TTTTCTCTTCTTTAAAAATGAAACTATTA-TATTCCACCATATTG----TGGTATCACTTGAGCTAATATAT
i canFam3.chr20                I 3 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=141356.000000
s hg38.chr14_KI270725v1_random      8775 47 +    172810 acaaGCAGTATGAAATCCCACAGGATTCACATGTAAAATATTGGA-TT----
s panTro4.chr3                 201680966 47 - 202329955 acaaGCAGTATGAAATCCCACAGGATTCACATGTAAAATATTGGA-TT----
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660458 47 + 202140232 acaaGCAGTATGAAATCCCACAGGATTCACATGTAAAATATTGGA-TT----
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67590279 47 +  86207423 acaagcagtttgaaaTCCCAAAAGATTCACATGCAAAATATTGGA-TT----
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61847107 47 + 192599291 ATAAGCAGTTTGAAATCCCAAAGGATTCACATGTAAAATATTGGA-TT----
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61003103 47 - 192460366 ATAAGCAGTTTGAAATCCCAAAGGATTCACATGTAAAATATTGGA-TT----
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59563000 47 + 187378091 ACAAGCAGTTTGAAATCCCAAAGGATTCACATGTAAAATAttgga-tt----
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64498833 48 - 101219884 ACAAGCAGTTTGAAATCCCAAAGGATTCACATGTAAAATACTGGATTT----
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46060764 47 -  98464013 ACAAGCAGCTTGAAATCCAAAAGCATTTACATGtaaaatattagt-at----
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16606566 51 +  58134056 CTCAGTGGTTTGAAATTGGAAAACACGCACACATAAAATACTGGT-ATTCTT
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45780593 103 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=670309.000000
s hg38.chr14_KI270725v1_random      8822 187 +    172810 TTTTATATTTTAATATGTAAAATGTAAGTTGTTTCTTTTCTCTCTGATACGAAATGCAGTTTTCATTCCACAGTTTCACTCTCATACACTTAATAACTTTTGTTAACGTAACAATACAGCGTGAGCGTTCCTGGGGCTATGCCTGACCCAAAGCAGACACTTAGTAAAATGTCTGTGGAACCTAAAT
s panTro4.chr3                 201681013 187 - 202329955 TTTTATATTTTAATATGTAAAATGTAAGTTGTTTCTTTTCTCTCTGATACGAAATGCAGTTTTCATTCCACAGTTTCACTCTCATACACTTAATAACTTTTGTTAACGTAACAGTACAGTGTGAGAGTTCCTGGGGCTATGCCTGACCCAAAGCAGACACTTAGTAAAATGTCTGTGGAACCTAAAT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660505 187 + 202140232 TTTTATATTTTAATATGTAAAATGTAAGTTGTTTCTTTTCTCTCTGATACAAAATGCAGTTTTCATTCCACAGTTTCACTCTCATATACTTAATAACTTTTGTTAACATAACAATACAGTGTGAGAGTTCCTGGTGCTATGCCTGACCCAAAGCAGACACTTAGTAAAATGTCTGTCGAACCTAAAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67590326 183 +  86207423 TTTTATATTTTAATATGTAAAATGTAAGTTGTTTCTTT----TCTGATACAAAATGCAGTTTTCATTCCACAGTTTCACTCTCATATACTTAATAACTTTTGTTAACATAACAATACAGTGTGAGTGTTCCTGGTGCTATGCCTGACCCAAAGCAGACACTTAGTAAAATGTCTGTCGAACCTAAAT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61847154 187 + 192599291 TTTTGTATTTTAATATGTAAAATGTAAGTTGTTTCTTTTCTCTCTGATACAAAATGCAGTTTTCATTCCACAATTTCACTCTTAGGTACTTAATAAGTTTTGTTAACGTAACAATACAGTGTGAGAGTTCCTGGTGCTATGCCTGACCCAAAGCACACACTCACTAAAATGTCTGTCGAACCTAAAT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61003150 187 - 192460366 TTTTGTATTTTAATATGTAAAATGTAAGTTGTTTCTTTTCTCTCTGATACAAAATGCAGTTTTCATTCCACAATTTCACTCTTAGGTACTTAATAAGTTTTGTTAACATAACAATACAGTGTGAGAGTTCCTGGTGCTATGCCTGACCCAAAGCACACACTCACTAAAATGTCTGTCGAACCTAAAT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59563047 187 + 187378091 ttttgtattttaatatgtaaagtgtaagttgtttcttttctctctgataCAAAATGCAGTTTTCATTCCACAATTTCACTCTTATGTACTTAATAAGTTTTGTTAACATAACAATACAGTGCGAGAGTTCCTGGTGCTATGCCTGACCCAAAGCACACACTCACTAAAATGTCTGTCGAACCTAAAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64498881 187 - 101219884 TTTTGTATTTTAATATGTAAAATGTAAGTTGTTTCTTTTCTCTCTGATACAAAATGCAGTTTTCAATCCACAATTTCACTCTTATGTACTTAATAAGTTTTGTTAACATAACAATACAGTGTGAGAGTTCCTGGTGCTATGCCTGACCCAAAGCACACACTCACTAAAATGTCTGTCGAACCTAAAT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46060811 182 -  98464013 ttttatattttaatttgtaaaatataaGTTGTTTCTTTTCTCTCTGATACAAAGTGCAGTTTTCATTCCACAGTTTCACTCTCATATACTTAATAAGTTTTGTTAACAAAACAATGCAGTGTGAGAGTTCCTGGCACTATGCCTGACCCAAAGCAGACACTTACTAAAATGTC-----AAGCTAAAT
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45780696 183 - 149736546 TTTCACAGTTTAACATTTCAAACACAAGGTGTTTGGTCTCCCCATAATAGTGAGT--AGTGTGGCTGCTTGAGTTGCTCTCTCAAAAGCATCCTGATTTT--CCAGCCTGACAATGCATTGTAAAAGTTATGGGCATCGTGCTTTATCCAGAAAAGTGTCTCCCTAAAGTGAGTACAGAAGCTGagt
i mm10.chr6                    I 103 I 404
s canFam3.chr20                 16606617 186 +  58134056 TTTTATAGATTTAGACCTAAAATAGGAGTTGTTTCTTCTTCCTCTGATATAAAAAGTGGCTCACATTTCAAAGTTTCACTTCCATGTACTTAATAAGTTTTGCTAACAAAACAAT-CATAGTAAAGGTTCCTAGTAGTATGTCTGACTCAAAACAGATGCTCCTTAAAATGTCTGTTGAGCCTAAAT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=592588.000000
s hg38.chr14_KI270725v1_random      9009 177 +    172810 TTATTTTAAGATACAATTGGAA---TCTAAACTAAACGAGTTTTCAAATTCAGAATCAGGCATATTTGCTGCAAAGCATTATGGGTCTCATTTCCATTTCCAAATCCACCAAGTCCATCCTTTCACGCATCATGTTACTCAGGGATAAAGCACATCTAAGTGAAACAGAAGTTAAATCTG
s panTro4.chr3                 201681200 177 - 202329955 TTATTTTAGGATACAATTGGAA---TCTAAACTAAAAGAGTTTTCAAATTCAGAATCAGGCATATTTGCTGCAAAGCATTATGGGTCTCATTTCCATTTCCAAATCGGCCAAGTCCATCCTTTCACGCATCATGTTACTCAGGGATAAAGCACATCTAAGTGAAACAGAAGTTAAATCTG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660692 177 + 202140232 TTATTTTAGGATACAATTGGAA---TCTAAACTAAAAGAGTTTTCAAATTTAGAATCAGGCATATTTGCTGCAAAGAATTATGGGTCTCATTTCCACTTCCAAATCTCCCAAGTCGATCCTTTCACGCATCATGTTACTCAGGGATAAAGCACATCTAAGCGAAACAGAAGTTAAATCTG
i ponAbe2.chr3                 C 0 I 2
s nomLeu3.chr21                 67590509 177 +  86207423 TTATTTTAGGATATAACTGGAA---TCTAAACTAAAAGAGCTTTCAAATTTAGAATCAGGCATATTTGCTGCAAAGAATTATGGGTCTCATTTCCATTTCCAAATCCACCAAGTCGATCCTTTCACGCATCATGTTACTCAGGGATAAAGCACATCTAAGTGAAACAGAAGTTAAATCTG
i nomLeu3.chr21                C 0 I 2
s rheMac3.chr2                  61847341 176 + 192599291 TTATTTTAGGATACAATTGGAA---ACTACAGTAAAAGAGTTTTAAAATT-ATAATCAGGCGTATTTGCTGCAAAGAATTATGAGTCTCATTTCCATTTCCAAATCCACCAAGTCGATCTTTTCATGCATCATGTTACTCAGGGATAAAGCACATCTAAGAGAAACAGAAGTTAAATCTG
i rheMac3.chr2                 C 0 I 2
s macFas5.chr2                  61003337 176 - 192460366 TTATTTTAGGATACAATTGGAA---ACTACAGTAAAAGAGTTTTAAAATT-ATAATCAGGCGTATTTGCTGCAAAGAATTATGAGTCTCATTTCCATTTCCAAATCCACCAAGTCGATCTTTTCATGCATCATGTTACTCAGGGATAAAGCACATCTAAGAGAAACAGAAGTTAAATCTG
i macFas5.chr2                 C 0 I 2
s papAnu2.chr2                  59563234 176 + 187378091 TTATTTTAGGATACAACTGGAA---ACTACagtaaaagagttttaaaatt-ataatcaggCATATTTGCTGCAAAGAATTATGGGTCTCATTTCCATTTCCAAATCCACCAAGTCGATCTTTTCATGCATCATGTTACTCAGGGATAAAGCACATCTAAGAGAAACAGAAGTTAAATCTG
i papAnu2.chr2                 C 0 I 2
s chlSab2.chr22                 64499068 176 - 101219884 TTATTTTAGGATACAATTGGAA---ACTACAGTAAAAGAGTTTTGAAATT-ATAATCAGGCATATTTGCTGCAAAGAATTATGGGTCTCATTTCCATTTCCAAATCCACCAAGTCGATCTTTTCATGCATCATGTTACTCAGGGATAAAGCACATCTAAGAGAAACAGAAGTTAAATCTG
i chlSab2.chr22                C 0 I 2
s calJac3.chr15                 46060993 176 -  98464013 TTATTTTAGGATACAACTGGAA---TCTAAAATAGAAGAGTTTTGAAATTTAAAATCAGGCATATTTGCTGCAAAGAATTATGGGTCTCATTTCCATTTCCAAATCCACCAAGTCAATCTCTTCACATGTCATGGTACTCAGGGATAAAGCACATTTAAGTGAAACAG-AGATAAATCTG
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16606803 175 +  58134056 TTGTTTTAAAATATAATTGGAATCTTCTGAAATAAGAGCGTTTTAAAAATTAGAATCAGGCATATTTGCTGCAAAGAGTTATGAATATCATTTTCAAAT--AAATCAGCCAA-TATATCTTTTCAAAGGTTGTGTTACTCAGGGACAAAGCACACCTAAATGAAACA--AGATAAATATG
i canFam3.chr20                C 0 I 2
e mm10.chr6                     45780879 404 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27730327 2460 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=10505.000000
s hg38.chr14_KI270725v1_random      9186 2 +    172810 CT
s panTro4.chr3                 201681377 2 - 202329955 CT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660871 2 + 202140232 CT
i ponAbe2.chr3                 I 2 C 0
s nomLeu3.chr21                 67590688 2 +  86207423 CT
i nomLeu3.chr21                I 2 C 0
s rheMac3.chr2                  61847519 2 + 192599291 CT
i rheMac3.chr2                 I 2 C 0
s macFas5.chr2                  61003515 2 - 192460366 CT
i macFas5.chr2                 I 2 C 0
s papAnu2.chr2                  59563412 2 + 187378091 CT
i papAnu2.chr2                 I 2 C 0
s chlSab2.chr22                 64499246 2 - 101219884 CT
i chlSab2.chr22                I 2 C 0
s calJac3.chr15                 46061169 2 -  98464013 CT
i calJac3.chr15                C 0 I 2
s saiBol1.JH378125              27732787 2 +  27742158 CT
i saiBol1.JH378125             I 2460 I 50
s canFam3.chr20                 16606980 2 +  58134056 CT
i canFam3.chr20                I 2 C 0
e mm10.chr6                     45780879 404 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=177465.000000
s hg38.chr14_KI270725v1_random      9188 48 +    172810 CTTTCATAACCCAGAGACATTAATTACAATGGAATAGCATGATAAACA
s panTro4.chr3                 201681379 48 - 202329955 CTTTCATAACCCAGAGACATTAATTACAATGGAATAGCATGATAAACA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660873 48 + 202140232 CTTTCATAACCCAGAGACATTAATTACAATGGAATAGCATGATAAACA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67590690 48 +  86207423 CTTTCATAACCCAGAGACATTAATTACAATGGAATAGCATGATAAACA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61847521 48 + 192599291 CTTTCATAACCCAGAGACATTAATTACAGCGGAATAGCATGGTAAACA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61003517 48 - 192460366 CTTTCATAACCCAGAGACATTAATTACAGCGGAATAGCATGGTAAACA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59563414 48 + 187378091 CTTTCATAACCCAGAGACATTAATTACAACGGAATAGCATGGTAGACA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64499248 48 - 101219884 CTTTCATAACCCAGAGACATTCATTACAATGGAATAGCATGGTAAACA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46061173 48 -  98464013 CTTTCATAACTCAGAGACATTAATTACAATGGAATAGCATGATAAACA
i calJac3.chr15                I 2 I 1
s canFam3.chr20                 16606982 48 +  58134056 CTTTTAGAACCCAGAGAAATTAATTATAGTGGATTGTCATGATAAAGA
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45780879 404 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378125              27732789 50 +  27742158 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5500.000000
s hg38.chr14_KI270725v1_random      9236 1 +    172810 C
s panTro4.chr3                 201681427 1 - 202329955 C
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660921 1 + 202140232 C
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67590738 1 +  86207423 C
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61847569 1 + 192599291 C
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61003565 1 - 192460366 C
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59563462 1 + 187378091 C
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64499296 1 - 101219884 C
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46061222 1 -  98464013 C
i calJac3.chr15                I 1 C 0
s saiBol1.JH378125              27732839 1 +  27742158 C
i saiBol1.JH378125             I 50 N 0
s canFam3.chr20                 16607030 1 +  58134056 C
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45780879 404 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=23134.000000
s hg38.chr14_KI270725v1_random      9237 7 +    172810 CGTGAAC
s panTro4.chr3                 201681428 7 - 202329955 CGTGAAC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660922 7 + 202140232 CATGAAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67590739 7 +  86207423 CATGAAC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61847570 7 + 192599291 CATAAAC
i rheMac3.chr2                 C 0 I 23
s macFas5.chr2                  61003566 7 - 192460366 CATAAAC
i macFas5.chr2                 C 0 I 6
s papAnu2.chr2                  59563463 7 + 187378091 CATAAAC
i papAnu2.chr2                 C 0 I 6
s chlSab2.chr22                 64499297 7 - 101219884 CATGAAC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46061223 7 -  98464013 CATGAAC
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16607031 7 +  58134056 CATGAAG
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45780879 404 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=3970.000000
s hg38.chr14_KI270725v1_random      9244 6 +    172810 GATATG
s panTro4.chr3                 201681435 6 - 202329955 GATATG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660929 6 + 202140232 GATAAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67590746 6 +  86207423 GATACA
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61003579 6 - 192460366 AGCATG
i macFas5.chr2                 I 6 I 11
s papAnu2.chr2                  59563476 6 + 187378091 AGCATG
i papAnu2.chr2                 I 6 I 11
s chlSab2.chr22                 64499304 5 - 101219884 AAAAT-
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46061230 6 -  98464013 AATATG
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16607038 6 +  58134056 AGTACG
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45780879 404 - 149736546 I
e rheMac3.chr2                  61847577 23 + 192599291 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=398570.000000
s hg38.chr14_KI270725v1_random      9250 119 +    172810 GAGATTAATAGAAAAA--ATATGAAAAGAAAATGACAGCAGC-TAGGAAGAAA-CAAAAAGGATGGGTGGAAATATGGGAGGTTGGCCTCCAAAGGGCAAGTAAAGTAGAACTAAAATAAAAC
s panTro4.chr3                 201681441 118 - 202329955 GAGATTAATAGAAAAA---TATGAAAAGAAAATGACAGCAGC-TAGGAAGAAA-CAAAAAGGATGGGTGGAAATAAGGGAGGTTGGCCTCCAAAGGGCAAGTAAAGTAGAACTGAAATGAAAC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69660935 119 + 202140232 GAGATTAATAGAAAAA--ATACGAAAAGAAAATGACAGCAAC-TAGGAAGAAA-CAAAAAGGATGGGTGGAAATAAGGGAGGTTGGCCTCCAAAGGGCAAGTAAAGTAGAACTGAAATAAAAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67590752 119 +  86207423 GAGATTAATAGAAAAA-AATATGAAAAGAAAATGACAGCAGC-TAGGAAGAAA-CAAAAAGG-TGGGTGGAAATAAGGGAGGTTGGCCTCCAAAGGGCAAGTAAAGTAGAACTGAAATAAAAC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61847600 120 + 192599291 GAGATTAATAGAAAAA-AATATGAAAAGAAAATGACAGCAGC-TAGGAAGAAA-CAAAAAGGATGGGTGGAAGCAAGGGAAGTTGGCCTCCAAAGGGCAAGTAAAGTAGAACTGAAATAAAAC
i rheMac3.chr2                 I 23 C 0
s macFas5.chr2                  61003596 120 - 192460366 GAGATTAATAGAAAAA-AATATGAAAAGAAAATGACAGCAGC-TAGGAAGAAA-CAAAAAGGATGGGTGGAAGCAAGGGAAGTTGGCCTCCAAAGGGCAAGTAAAGTAGAACTGAAATAAAAC
i macFas5.chr2                 I 11 C 0
s papAnu2.chr2                  59563493 120 + 187378091 gagattaatagaaaaa-aatatgaaaagaaaatgacagcagc-taggaagaaa-caaaaaggatgGGTGGAAGCAAGGGAAGTTGGCCTCCAAAGGGCAAGTAAAGTAGAACTGAAATAAAAC
i papAnu2.chr2                 I 11 C 0
s chlSab2.chr22                 64499309 120 - 101219884 GAGATTAATAGAAAAA-AATATGAAAAGAAAATGACAGCAGC-TAGGAAGAAA-CAAAAAGGATGGGTGGAAACCAGGGAAGTTGGCCTCCAAAGGGCAAGTAAAGTAGAACCGAAATAAAAC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46061236 116 -  98464013 GAGATTAATGGGAAAA--ATATGGGAGGAAAA----AGCAGCTTAGGAAGAAA-CCAAAAGGATGGGTTGAAATAAGGGAAGTTAGCCTTCAATGAGCAAGTAAAGTAGAACTGAAATAAAAT
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16607044 120 +  58134056 GAGCTTAATAGAAAAAAAAAATGAGAATGAAATAGCAGAAGC-CTGGAAGAAGCCAAAAAGGACGGATAGGAAGAAAGAAAGT--ATCTGCAAAGGTCAAGTAAAGTAGAATTGGAATAAAAC
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45780879 404 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=936761.000000
s hg38.chr14_KI270725v1_random      9369 290 +    172810 CTGGTGATTTTGATCTGCATGTGTAATTAATAT-------AGTTTCTGGTGGGGGGTGATGGGAGAAATGGGGATAAAGAAAAGCCCTGAGTAGCAACCTTCTTGCCTGAATTGTGAAGGCAAC----ACGAATACACAGATCACATCTTGGGAAAAATA--AATGTGACCCCTTAAAATTTGCACCATATTATTGAAATCTCTTTGACACAAGTAACCATAG------AAGACACAGGTAACATATGGGTTGCTCTTTATGTAGGGCTTTAGC-----AGTCTATTCA-----------GTCTTTTAC---------CATGTGACTA--CTTTGT-------------------
s panTro4.chr3                 201681559 290 - 202329955 CTGGTGATTTTGATCTGCGTGTGTAATTAATAT-------AGTTTCTGGTCGGGGGTGATGGGAGAAATGGGGATAAAGAAAAGCCCTGAGTAGCAACCTTCTTGCCTGAATTGTGAAGGCAAC----ACGAATACACAGATCACGTCTTGGGAGAAATA--AATGTGACCCCTTAAAATTTGCACCATATTATTGAACTCTCTTTGACACGAGTAACCATAG------AAGACACAGGTAACACATGGGTTGCTCTTTATGTAGGGCTTTAGC-----AGTCTATTCA-----------GTCTTTTAC---------CATGTGACTA--CTTTGT-------------------
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69661054 290 + 202140232 CTGGTGATTTTGATCTGTGTGTGTAATCAATAT-------AGTTTCTGGTGGGGGGTGATGGGAGAAATGGGGATAAAGAAAAGCCCTGAGTAGCAACCTTCTTGCCTGAATTGTGAAGGCAAC----ACGAATACATAGATCAGGTCTTGGGAAAAATA--AATGTGACCCCTTAAAATTTGCACCATATTATTGAAATCTCTTTGACGTGAGTAACCATAG------AAGACACAGGTAACATATGGGTTGCTCTTTATGTAGGGCTTTAGC-----AATCTATTCA-----------GTCTTTTAC---------CATGTGACTA--CTTTGT-------------------
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67590871 288 +  86207423 CTGGTGATTTTGATCTGTGTGTGTAATTAATAT-------AGTTTCTGATGGAGGGTGATGGGAGAAATGGGGATAAAGAAAAGCCCTGAGTAGCAACCTTCTTG-CTGAATTGTGAAGGCAAC----ATGAATACATAGATCG-GTCTTGGGAAAAATA--AATGTGACCCCTTAAAATTTGCGCCATATTATTGAAATCTCTTTGATGTGAGTAACCATAA------AAGACACAGGTAACATCCGGGTTGCTCTTTATGTAGGGCTTTAGC-----AATCTACTCA-----------GTCTTTTAC---------CATGTGACTA--CTTTGT-------------------
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61847720 295 + 192599291 CTGGTGATTTTAATATATGTGTGTAATTAATGT-------AGTTTCTGGTGGGGGGTAATGGAAGAAATGGGGATGAAGAAAAGCCCTGAGTAGCAACCTTCTTGCCTGAATTATGAAGGCAAC----ACGAATACATAGATCAGGTATTGGGAAAAATA--AATGCAACCCCTTAAAATTTGCACCATATTATTCAAATCTCTTTGACGTGAGTAACCATAG------AAGACACAGGTAACATCCGGGTTGCTCTTTATGTAGGGCTTTAGCAATCTAATCTACTCA-----------GTCTTTTAC---------CATGTGACTA--CTTTAT-------------------
i rheMac3.chr2                 C 0 I 165
s macFas5.chr2                  61003716 295 - 192460366 CTGGTGATTTTAATATATGTGTGTAATTAATGT-------AGTTTCTGGTGGGGGGTGATGGAAGAAATGGGGATGAAGAAAAGCCCTGAGTAGCAACCTTCTTGCCTGAATTATGAAGGCAAC----ACGAATACATAGATCAGGTATTGGGAAAAATA--AATGCAACCCCTTAAAATTTGCACCATATTATTCAAATCTCTTGGACGTGAGTAACCATAG------AAGACACAGGTAACATCCGGGTTGCTCTTTATGTAGGGCTTTAGCAATCTAATCTACTCA-----------GTCTTTTAC---------CATGTGACTA--CTTTAT-------------------
i macFas5.chr2                 C 0 I 166
s papAnu2.chr2                  59563613 295 + 187378091 CTGGTgattttaatatatgtgtgtaattAACGT-------AGTTTCTGGTGGGGGGTGATGGAAGAAATGGGGATGAAGAAAAGCCCTGAGTAGCAACCTTCTTGCCTGAATTATGAAGGCAAC----ACGAATACATAGATCAGGTATTGGGAAAAATA--AACGCAACCGCTTAAAATTTGCACCATATTATTCAAATCTCTTTGACGTGAGTAACCATAG------AAGACAGGGGTAACATTCGGGTTGCTCTTTATGTAGGGCTTTAGCAATCTAATCTATTCA-----------GTCTTTTAC---------CATGTGACTA--CTTTat-------------------
i papAnu2.chr2                 C 0 I 166
s chlSab2.chr22                 64499429 295 - 101219884 CCGGTGATTTTAATATATGTGTGTAATTAATGT-------AGTTTCTGGTGGGGGGTGATGGAAGAAATGGGGATGAAGAAAAGCCCTGAGTAGCAACCTTCTTGCCTGAATTATGAAGGCAAC----ACGAATACATAGATCAGGTATTGGGAAAAATA--AATGCAACCCCTTAAAATTTGCACCATATTATTCAAATCTCTTTGACATGAGTAACCACAG------AAGACACAGGTAACATCCGGGTTGCTCTTTATGTAGGGCTTTAGCAATCTAATCTATTCA-----------GTCTTTTAC---------CATGTGACTA--CTTTAT-------------------
i chlSab2.chr22                C 0 I 166
s calJac3.chr15                 46061352 292 -  98464013 CTGGCAGTTTTAATCTGTGGGCGTAATTAATAC-------AGTTTCTGGTGAGGGGTGATGGGAGAAATGGTGATAAAGAACATCACTGAGTAGCAACCTTCTTGCCTAAAGTGTAAAGGCAAC----ACAAATACATGGATCAGATCTTGAGAAAAAGA--GATGCAATCCCTTAAAATTTGCACCATATTATTCAGATCTCTTTGAGGTGGGTAAGCATAG------AAGATACAGGTAACAT-CGGATGGCTCTTAATGTAGGGCTAAAGTAGT--ATTCTATTCA-----------GTCTCTTAC---------CATATGACTA--CTTTAT-------------------
i calJac3.chr15                C 0 I 156
s mm10.chr6                     45781283 290 - 149736546 CTGGTAGTTT--------GTATACAATTAAAATATTCATGAATTTCTGTCAAGATGTGATGACAGA---GGAGATGACGTAAAAC--------ACAACCT-------TGAATTGTAAATACAGCAATTATAAATACATACATGGGCGTTTAGGAAAGAGA------TGTTCTTTTAAAAATTGTTCTGAGTTATTCTAG-CTTTTGGAGGCAGATAAGCAGAG--CAATAAAAGGCAGATAATATAAGATAT----TTTTTGGAAGGATTCAGC-----AAACTGtttatatatatattttttttttaCTTGACCACATATGTGACTG--TGATGT-------------------
i mm10.chr6                    I 404 I 7
s canFam3.chr20                 16607164 316 +  58134056 TTGGTGATCTTAATCAACATGTATAACTAATAGAGCA---AGTTTCCAGGGGGATATATTGGAGGA---GTAGATAGAGCATAGCCC----TATCAATCTTCTTGCCCAAATTGTACAAGGAACATGCATGAATATATAGATCAGTTCTCAAGAAAAAAAGAAATGCGACTCCATAAAATTTGTTCCATATTATTCAAATTCCTTTTA--TGAGTAAGTATAAGGCTATAAAACACAGGTAATATCAAAGCTGTTCTTCATGTAGGACTCT-GT-----AAACTACTT------------GTTTTTTCC---------CATGTGACTAGTCTTTGTTTCTGAATATTATTTTCGT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=67741.000000
s hg38.chr14_KI270725v1_random      9659  38 +    172810 ATGT-----------------------------------------------------------------------------------------------------------------GGAAAAAT-------------------------TGTTACATAAACA-----------------AAATAGAAGCATT
s panTro4.chr3                 201681849  38 - 202329955 ATGT-----------------------------------------------------------------------------------------------------------------GGAAAAAT-------------------------TGTTACATAAACA-----------------AAATAGAAGCATT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69661344  38 + 202140232 ATGT-----------------------------------------------------------------------------------------------------------------GGAAAAAT-------------------------TGTGACATAAACA-----------------AAATGGAAGCATT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67591159  38 +  86207423 ATGT-----------------------------------------------------------------------------------------------------------------GGAAAAAT-------------------------TGTTACATAAACA-----------------AAATAGAAGCATT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61848180  38 + 192599291 atgt-----------------------------------------------------------------------------------------------------------------ggaaacat-------------------------tgttacgtaaaca-----------------aaatagaagcttt
i rheMac3.chr2                 I 165 C 0
s macFas5.chr2                  61004177  38 - 192460366 atgt-----------------------------------------------------------------------------------------------------------------ggaaacat-------------------------tgttacgtaaaca-----------------aaatagaagcttt
i macFas5.chr2                 I 166 C 0
s papAnu2.chr2                  59564074  38 + 187378091 ATGT-----------------------------------------------------------------------------------------------------------------GGAAACAT-------------------------TGTTACGTAAACA-----------------AAATagaagcttt
i papAnu2.chr2                 I 166 C 0
s chlSab2.chr22                 64499890  38 - 101219884 atgt-----------------------------------------------------------------------------------------------------------------ggaaacat-------------------------cgttacgtaaaca-----------------aaatagaagcttt
i chlSab2.chr22                I 166 C 0
s calJac3.chr15                 46061800  37 -  98464013 atgt-----------------------------------------------------------------------------------------------------------------ggagaaat-------------------------tgttacataaac------------------aaatagaagtgtt
i calJac3.chr15                I 156 C 0
s mm10.chr6                     45781580  55 - 149736546 TTTT-----------------------------------------------------------------------------------------------------------------ACTAAAAC-------------------------AAACAAATAAATAACAGGAAGAAGGCGAGTAGAGAGAGGCATT
i mm10.chr6                    I 7 I 59
s canFam3.chr20                 16607480 176 +  58134056 ATGTTATATCAgaatacatacagaggagagtgagtgaaatgatcaaaaacgaatctaattagaaatgatttaaggaactaggtacagacacttagttgacagaagacaacatttcagagagacatcatggttgtctctaagatgtgaatatgttactataata-----------------gatcagaaacatt
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=119734.000000
s hg38.chr14_KI270725v1_random      9697 37 +    172810 ttctctttga-tacc-aagagtagagctaagaccaataa
s panTro4.chr3                 201681887 37 - 202329955 ttctctttga-tacc-aagagtagagttaagaccaataa
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69661382 37 + 202140232 ttctctttga-tacc-aagagtcgagctaagaccaatag
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67591197 37 +  86207423 ttctctttga-tacc-aagagtagagctaagaccaatag
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61848218 37 + 192599291 ttctctttga-ttcc-aagagtagagctaagaccaatag
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61004215 37 - 192460366 ttctctttga-ttcc-aagagtagagctaagaccaatag
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59564112 37 + 187378091 ttctctttga-ttcC-AAGAGTAGAGCTAAGACCAATAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64499928 37 - 101219884 ttctctttga-ttcc-aagagtagagctaagaccaatag
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46061837 38 -  98464013 ttctcattgagtccc-aagaatagagctaagatcagtag
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16607656 38 +  58134056 ttctctgtga-ttcctaacagtagaaccaggatggacgg
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45781635 59 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=3050103.000000
s hg38.chr14_KI270725v1_random      9734 1005 +    172810 atcaatattaagggaaaa-------------ttttaccttagatataagaaaataa-ttttctaacaGCTCAAATTATACTCAGTTGTTGCTATTAACTAACAACCCTTATGATA-TCTG------------CATACTAATACTTGTAA--AATCAAGATTAATTTGATAT-----TCATTTCTGGTAGGGGATGGGGTTATGTCATTTTCGTACAGTCTTGGAGAGAAAATAATTTGTTAAATGCAATTTGCTAGCATCTATTAGAAATCTTGTAAAGGTTATAT------ATTTTTAATTTCACTTAATATTTCTGC-TTTTATTTTTCTACACATGACCATAAATATATATCTTCATGTATGCATGATG-AAGCAT----GGTAACAGA---TTTTTTAA---TGGAATAAGCT----------------------ATTATGGTACTTTCATTCTATGAAATATTACGTAGTTCTCAATCAAAATGAGAGGGATAGCTGTATA-AAACCTAAGCTATTGTTAACA-G--------------AAAAAAAGCATGTAAAC-A-AAATTATTAAATTATGGTTTTAATAAAATCCATATATATGAATTTGGAC----------------ACATGTATACACAAGTAAAGTCAGAGAAAATGACAGAATATA--ATGTATGTTGAAATGATAGCAATGACTA--CCACTAAAAAA--AAATCAGAATAGAATGGTAATTTAAAATAAATATAAGACAGCAGTGGGCAGGATGAGGACACATTTAAATCTACATAATACTGCATTGTGTAAGCTAAATTTTTCAAGACCTGCTTGTGTAATTATTTTTAAA--------------AAGAAAAAA-GGTTTGTTTCC----TTGTGTTGAGAAT--------TATTCAACATGGAAAGTGCTAC-----AGAAGAGAGA-GCTCATTGACTCCATTTGTTCTAATAaaacaaacaaacaagcaacaaaaaacCCTATATATTTTATACAAGTAGAAACCCTATATATTTTATACAAGTAGAAATAACTAGCAATATATTTCTATAGGGAGAAATAAGCCAGCATATTTTCAACGTTCTTAAGATTTCATTTCTAAAGCAAATAAAA-CAAGGCAAAGCCAATATTG
s panTro4.chr3                 201681924 1005 - 202329955 atcaatattaagggaaaa-------------ttttaccttagatataagaaaataa-ttttctaacaGCTCAAATTATACTCAGTTGTTGTTATTAACTAACAACCCTTAT---A-TCTG------------CATACTAATACTTGTAA--AATCAAGATTAATTTGATAT-----TCATTTCTGGTAGGGGACGGGGTTATGTCATTTTCCTACAGTCTTGGAGAGAAAATAATTTGTTAAATGCAATTTGCTAGCATCTGTTAGAAATCTTGTAAAGGTTATAT------ATTTTTAATTTCACTTAATATTTCTGC-TTTTATTTTTCTACACATGACCATAAATATATATCTTCATGTATGCATCATG-AAGCAT----GGTAACAGA---TTTTTTAA---TGGAATAAGCT----------------------ATTATGGTACTTTCATTCTATGAAATATTACGTAGTTCTTAATCAAAATGAGAGGGATATCTGTATA-AAACCTAAACTATTGTTAACA-G--------------AAAAAAAGCATGTAAAC-A-AAATTATTAAATTATGGTTTTAATAAAATCCATATATATGAATTTGGAC----------------ACGTGTATACACAAGTAAAGTCAGAGAAAATGACAGAATATA--ATATATGTTGAAATGATAGCAATGACTA--CCACTAAAAAA--AAATCAGAATAGAATGGTAATTTAAAATAAATATAAGACAGCAGTGGGCAGGATGAGGACACATTTAAATCTACATAATACTGCACTGTGTAAGCTAAATTTTTCAAGACCTGCTTGTGTAATTATTTTTAAA--------------AAGAAAACA-CGTTTGTTTCC----TTGTGTTGAGAAT--------TATTCAACATGGAAAGTGCTACCTAAAAGAAGAGAGA-GCTCATTGACTCCATTTGTTCTAA-AAAACAAACAAACAAGCAACAAAAA-CCCTATATATTTTATACAAGTAGAAACCCTATATATTTTATACAAGTAGAAATAACTAGCAATATATTTCTATAGGGAGAAATAAGCCAGCATATTTTCAACGTTCTTAAGATTTCATTTCTAAAGCAAATAAAA-CAAGGCAAAGCCAATATTG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69661419 1010 + 202140232 atcaatattaagggaaaa-------------ttttaccttagatataagaaaat-a-ttttctaacaGCTCAAATTATACTCAGTTGTTGTTATTAACTAACAACCCTTATGATA-TCTG------------CATACTAATACTTGTAA--AATCAAGATTAATTTGATAT-----TCATTTCTGGTAGGGGACGGGGTTATGTCATTTTCCTACAGTCTTGGAGAGAAAATAATTTGTTAAATGCAATTTGTTAGCATCTATTAGAAATCTGGTAAAGGTTATAT------ATTTTTAATTTCACTTAATATTTCTGC-TTTTATTTTTCTACACATGACCATAAATATATATCTTCATGTATGCATGATG-AAGCATAGTGAGTAACAGA---TTTTTTAA---TGGAATAAGCT----------------------ATTATGGTACTTTCATTCTATGAAACGTTATGGAGTTCTTAATCAAAATGAGAGGGATATCTGTATA-AAACCTAAGCTATTGTTAACA-G--------------AAAAAAAGCATGTAAAC-A-AAATTATTAAATTATGGTTTTAATAAAATCCATATATATGAATTTGGAC----------------ATGTGTATACACAAGTAAAGTCAGAGAAAATGACAGAATATA--ATGTATGTGGAAATGATAGCAATGATTA--CCACTAAACAA--AAATCAGAATAGAATGGTAATTTAAAATAAATATAAGAGAGCAGTGGGCCGGATGAGGACACATTTAAATCTACATAATACTGCATTTTGTAAGCTAAATTTTTCAAGACCTGCTTGTGTAATTATTTTTAAA--------------AAGAAAACA-GGTTTGTTTCC----TTGTGTTGAGAAT--------TATTCAACATGGAAAGTGCTACCTAAAAGAAGAGAGA-GCTCATTGACTCCATTTGTTCTAA-AAAACAAACAAACAA-CAAAAAAAA-CCCTATATATTTTATACAAGTAGAAACCCTATATATTTCATACGAGTAGAAATAACTAGTAATATATTTCTATAGGGAGAAATAAGCCAGCATATTTTCAACGTTCTTAAGATTTCATTTCTAAAGCAAATAAAA-CAAGGCAAAGCCAATATTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67591234 1028 +  86207423 atcaatattaagggaaaa-------------ttttaccttagatataagaaaataa-ttttctaacaGCTCAAATTATACTCAGTTGTTGTTATTAACTAACAACCCTTACGATG-TCTG------------CATACTAATACTTGTAA--AATCAAGATTAATTTGATAT-----TCATTTCTGGTAGGGGATGGGGTTATGTCATTTTCCTATAGTCTTGGAGAGAAAATAATTTGTTAAATGCAATTTGCTAGCATCTATTAGAAATCTTGTAAAGGTTATAC------Gtttttaatttcacttaatatttctgt-ttttatttttCTACACATGACCATAAATACATATTTTCATGTATGCATGATG-AAGCATGGTGAGTAACAGA---TTTTTTAA---TGGAATAAGCTACAT-----TTTCCACAAATAGATTATGGTACTTTCATTCTATGAAATGTTACATAGTTCTTAACCAAAATGAGAGGGATATCTGTATA-AAACCTAAGCTATTTTTAACA-G--------------AAAAAAAGCACATAAAC-A-AAATTATTAAATTATGGTTATAATAAAATCCATATATGTGAATTTGGAC----------------ATGTGTATACACAAGTAAAGTCAGAGAAAATAACAGAATATA--AGGTATGTTGAAATGATAGCAGTGATTA--CCACTAAAAAA--AAATCAGAATAGAATGGTAATTTAAAATAAATATAAGAGAGCAGTGGGCAGGATGAGGACACATTTAAATCTACATAATACTGCATTGTGTAAGCTAAATTTTTCAAGACCTGCTTGTGTAACTATTTTTAAA--------------AAGAAAACA-GGTTTGTTTCC----TTGTGTTGAGAAT--------TATTCAACACGGAAAGTGCTACCCAAAAGAAGAGAGA-GCTCACTGACTCTATTTGTTCTAA-AAAACAAACAAGCGA-CCAAAAAAA-CCCTAAATATTTTATACAAGTAGAAACCCTATATATTTTATACGACTATAAATAACTAGTAATATATTTCTATAGGGAGAAAGAAGCCAGTATATTTTCAACATTCTTAAGATTTCATTTCTATAGCAAATAAAA-CAAGGCAAAGCCAATATTG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61848255 1005 + 192599291 attaatattaagggaaaa-------------ttgtaccttagatataagaaaataa-ttttctaacaGCTCAAATTATACTCAGTTGTTGTTATTAACTAACAACCCTTATGATA-TCTG------------CATACTAATACTTGTAA--AATCAAGATAAATTTGATAT-----TCATTTCTGGTAGGGGATGGGGTTATGTTGTTTTCCTATAGTCTTGGGGAGAAAATAATTTGTTAAATGCAATTTGCTATCATCTATTAGAAATCTTGTGAAGGTTTTTT------ATTTTTTATTTCACTTAATATTTCTGC-TTTTGTTTTTCTACACATGACCATAAATATATCTCTTCTTGTATGCATGATG-AAACAT----GGTAATAGATTTTTTTTTAA---TGGAATTAGCTACAT-----TTTCCACAAATAGATTATGGTACTTCCATTCTATTAAATGTTACGTCGTTGTTAATCAAAATGAGAGGGATATCTGTATA-AAACCTAAGCTATTGTTAACA-G---------------AAAAAAGCATGCAAAC-A-AAATTATTAAATTATGGTTTTAATAAAATCCATATATGTGAATTTGGAC----------------ATGTGTATACACATGTAAAGTCAGAGAAAATGACAGAATATA--ACGTATCTTGAAACGATTGCAATGATTA--CCACTAAAAAAACAAATCAAAATAGAATGGGAATTTAAAATAAAAGTAAAAGAGCAGTGGGCAGGATGAGGACACGTTTAAATCTACATAATACTGCACTGTGTAAGCTGAATTGTTCAAGACCTGCCTGGGAAATTATTTTTAGA--------------AAGAAAACA-GGTTTGTTTCC----TTGTGTTGACAATTATTCAACTATTCAACAT-GAAAGTGCTACCTAAAAGAAGAGAGA-GCTCATTGACTCCATTTGTTCTA--AAAACAAACAAACACACACCAAAAA-ACCTACATATTTTA------------------------------AGTACAAATAACTAGTAATATATTTCTATAGGGAGAAATAAGCCAGTATGTTTTCAACGTTCTTAAGATTTCATTTCTAAAGCAAATAAAA-CAAGGCAAAGCCAATACTG
i rheMac3.chr2                 C 0 I 4
s macFas5.chr2                  61004252 1004 - 192460366 attaatattaagggaaaa-------------ttgtaccttagatataagaaaataa-ttttctaacaGCTCAAATTATACTCAGTTGTTGTTATTAACTAACAACCCTTATGATA-TCTG------------CATACTAATACTTGTAA--AATCAAGATAAATTTGATAT-----TCATTTCTGGTAGGGGATGGGGTTATGTTGTTTTCCTATAGTCTTGGGGAGAAAATAATTTGTTAAATGCAATTTGCTATCATCTATTAGAAATCTTGTGAAGGTTATAT------ATTTTTAATTTCACTTAATATTTCTGC-TTTTGTTTTTCTACACATGACCATAAATATATCTCTTCTTGTATGCATGATG-AAACAT----GGTAATAGA-TTTTTTTTAA---TGGAATTAGCTACAT-----TTTCCACAAATAGATTATGGTACTTCCATTCTATTAAATGTTACGTCGTTGTTAATCAAAATGAGAGGGATATCTGTATA-AAACCTAAGCTATTGTTAACA-G---------------AAAAAAGCATGCAAAC-A-AAATTATTAAATTATGGTTTTAATAAAATCCATATATGTGAATTTGGAC----------------ATGTGTATACACATGTAAAGTCAGAGAAAATGACAGAATATA--ACGTATCTTGAAACGATTGCAATGATTA--CCACTAAAAAAACAAATCAAAATAGAATGGGAATTTAAAATAAAAGTAAAAGAGCAGTGGGCAGGATGAGGACACGTTTAAATCTACATAATACTGCACTGTGTAAGCTGAATTGTTCAAGACCTGCCTGGGAAATTATTTTTAGA--------------AAGAAAACA-GGTTTGTTTCC----TTGTGTTGACAATTATTCAACTATTCAACAT-GAAAGTGCTACCTAAAAGAAGAGAGA-GCTCATTGACTCCATTTGTTCTA--AAAACAAACAAACACACACCAAAAA-ACCTACATATTTTA------------------------------AGTACAAATAACTAGTAATATATTTCTATAGGGAGAAATAAGCCAGTATGTTTTCAACGTTCTTAAGATTTCATTTCTAAAGCAAATAAAA-CAAGGCAAAGCCAATACTG
i macFas5.chr2                 C 0 I 4
s papAnu2.chr2                  59564149 1005 + 187378091 ATTAATATTAAGGGAAAA-------------TTGTACCttagatataagaaaataa-ttttctaacagCTCAAATTATACTCAGTTGTTGTTATTAACTAACAATCCTTATGATA-TCTG------------CATACTAATACTTGTAA--AATCAAGATAAATTTGATAT-----TCATTTCTGGTAGGGGATGGGGTTATGTTGTTTTCCTATAGTCTTggggagaaaataatttgttaaatgcAATTTGCTATCATCTATTAGAAATCTTGTGaaggttatat------atttttaatttcacgtaatatttctgc-ttttgtttttctacacATGACCATAAATATATCTCTTCTTGTATGCATGAAG-AAACAT----ggtaatagatttttttttaa---tggaattagcTACAT-----TTTCCACAAATAGATTATGGTACTTCCATTCTATGAAATGTTACGTCATTGTTAATCAAAATGAGAGGAATATCTGTATA-AAACCTAAGCTATTGTTAACA-G---------------AAAAAAGCAtgcaaac-a-aaattattaaattatggtTTTAATAAAATCCATATATGTGAATTTGgac----------------atgtgtatacacatgtaaagTCAGAGAAAATGACAGAATATA--ACGTATGTTGAAACGATCGCAATGATTA--CcactaaaaaaacaaatcaaaatagaatgggaatttaaaataaaagtaaaagagcAGTGGGCAGGATGAGGACATGTTTAAATCTACATAATACTGCACTGTGTAAGCTGAAttgttcaagacctgcctgggaaattatttttaga--------------aagaaaaca-ggtTTCCTTCC----TTGTGTTGACAATTATTCAACTATTCAACAT-GAAAGTGCTACCTAAAAGAAGAGAGA-GCTCATTGACTCCATttgttcta--aaaacaaacaaacaaacaccaaaaa-accTACATATTTTA------------------------------AGTACAAATAACTAGTAATATATTTCTATAGGGAGAAATAAGCCAGTATGTTTTCAACGTTCTTAAGATTTCATTtctaaagcaaataaaa-caaggcaaagccaatactg
i papAnu2.chr2                 C 0 I 8
s chlSab2.chr22                 64499965  994 - 101219884 attaatattaagggaaaa-------------ttgtaccttagatataagaaaataa-ttttctaacaGCTCAAATTATACTCAGTTGTTGTCATTAACTAACAACCCTTATGATA-TCTG------------CATGCTAATACTTGTAA--AATCAAGATAAAATTGATAT-----TCATTTCTGGTAGGGGATGGGGTTATGTTGTTTTCCTATAGTCTTGGGGAGAAAATAATTTGTTAAATGCAATTTGCTATCATCTATTAGAAATCTTGTAAAGGTTATAT------ATTTTTAATTTCACTTAATATTTCTGC-TTTTATTTTTCTACACATGACCATCAATATATCCCTTCTTGTATGCATGATG-AAACAT----GGTAATAGA---TTTTTTAA---TAGAACTAGCTACAT-----TTTCCACAAATAGATTACGGTACTTCCATTCTATGAAATGTTATGTCATTGTTAATCAAAATGAGAGGGATATCTGTATA-AAACCTAAGCTATTGTTAACA-G---------------AAAAAAGCATGCAAAC-A-AAATTATTAAATTATGGTTTTAATAAAATCCATATATGTGAATTTGGAC----------------ATGTGTATACACATGTAAAGTCAAAGAAAATGACAGAATATA--ACGTATGTTGAAACGATAGCAATGATTA--CCACTAAAAAAACAAATCAAAATACAATGGGAATTTAAAATAAAAGTAAGAGAGCAGTGGACAGGATGAGGACACATTTAAATCTACATAATACTGCACTGTGTAAGCTGAATTGTTCAAGACCTGCCTGGGAAATTATTTTTACA--------------AAGAAAACA-GGTTTGTTTCC----TTGTGTTGACAGT--------TATTCAACAT-GAAAGTGCTACCTAAAAGAAGAAAGA-GCTCATTGACTCCATTTGTTCTA--AAAACAAACAAACAAACACCAGAAA-ACCTACACATTTTA------------------------------AGTAGAAATAACTAGTAATATATTTCTATAGGGAGAAATAAGCCAGTATGTTTTCAACGTTTTTAAGATTTCATTTCTAAAGCAAATAAAA-CAAGGCAAAGCCAATACTG
i chlSab2.chr22                C 0 I 48
s calJac3.chr15                 46061875  949 -  98464013 atcaatattaaagggaaa-------------tcttacatcagatataagaaaacaa-ttttctaacagctcaaattgtACTCAGTTGTTGTTATTAACTAACAATCCTTATGATA-TTAATATTTGTAAAATCATACTAATACTTGTAA--ACTCAAGATTAATTTCATAT-----TCATTTCTGATAGGAGATTGGGTTATGATGTTTTTCTGTAGTCTTGGTAAGAAAATAATTTGTTAAATGCAATTTGCTAGCATCTATTAGAAATCTTGCAAAGGTTACAT------ATTTTTAATTTCACTTAATATTTCTGT-TTTTATTTTTCTACACATGACCATAAATATATCTCTTCATGTATGCATGATG-AAGCATGGTGGGTAATAGA-TTTTTTTTAA---TGGAATAAGCTACAT-----TTTCCACAAATAGATTATGGTACTTTCATTTTATGAAACGTTATGTAGTTCTTAATCAAAATGAGAGCAATATCTATATA-AATCCCTAA-----GATTACA-G--------------AAAAAACGCATGTAAACAA-AAATTATTAAATTAAGGATTTAACAAAATCCATATATGTGAATTTGAAC----------------ACATGT-----------AAATCAGAGAAAATGACAGAATAT---ATGTGTGTTGAAACAATAACAATGATTA--CGACTAA------AAATCAGAATAGAATTAGGATTTAAAGTAAAAGTAAGAGGGAAGTGGGCAGGATGG----ACACTTAAATCTATCTAATACTGCATCGTGTATG------------------------GTAATTATTTTTAAA--------------AAGAAAACA-TGTTTGTTTCC----TTGTGTTGAGAAT--------TATTCAACATGGAAAGTGCTACCTAAAAGAAGAGAGA-GCTCAATGACTCCATTTGTTCTAA-AAAAAAAA------------AAAAA-AGCTGTACGTTTTATAAA--------------------------AGTAGAAATAGTTAGTAATATATACCTATAGGGAGAAACGAGCCAGTTTATTTTAAACTTTCTTAAGGTTTAATTTGTAAAGCAAATAAAA-CAAGGCAAAGC--------
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45781694  939 - 149736546 GGCATTAGCAAGAGCAAATAAGACAGTGAGCTTTCAGCTTGACAGCACAAAAGCAG-TGCAGTAAGAGTTCAAGTCACACTCACCCTCCACTATTAGCAAAGCCCCCAAATAACC-GCTG------------C---CTTACACTGCAAAGCAATCAGG-----TTTCACGC-----TGCCTCTTTATACAAG-CGATCCCATAGTGCTCTCACATAATCCTGGCTGCACAA-----TGTTAAACACAA---GCTAG--------AAACATCTTTCTATGTTTATTTTAGTAATTCCTTTATTTTGTAAAGTAAGTTCACAGTTAATTGTTCTGAATATGACTACAA-----------TGTCTGTGCATATTGAAAACATGCTTGGTAATCTA---TTTTGAAA---AGTGAAAGGCGCCAGAAAGACGTCGAGAAACAGGTGATAGCACTTTCCGGTTATCAAACATCCC---ATTGTTTATCAGAAAGGAATTGATTTCCGGGTACAAATCCAA-------TTGACATG--------------GAGAAAAGCTTATGAAC-A-AAATAACTTAATTA-GACTTTAACAAGATCCGTATAGGTGAATTTGGAT----------------ATATATAGACACCAA-AAATCTATAAAAAATGACAGAAGAAATTTTGCACTATGTATAAACTAAAATGGTTATGTGACTCTATGG--CCATCAGAACGGAGATGGAAT-----GTGGAAATAAGAGGGCTGAGCGAGGAGCAGAGATACTTTTAACTCTGTAGTGTAGTGAATTGTATATG-------TCCCAAGAGTTGCCTGGGTGATTATGTTTGAA--------------ATGAAACTATGGGTTCTCTC------------AAAAAT--------TATTCAACAT-GGAAAAATTGCATGCATGTGGGGAAATGTTC----------TCTGTTTTA--GAAGC---------------------ATTCATCCATTTCC---------------------------ACAAGTTGGAAGAATTAGCATCATGTATTTAAAGAAGGAAGTGAGCTGGCACATTCTCACTGTTTTTAGGATTTTATTTGTTAAGCAAGAAAAACCAACACTGAGTAAATATTA
i mm10.chr6                    I 59 C 0
s canFam3.chr20                 16607694  999 +  58134056 atcagtgttaaagggaaa-------------tttcagctcagatgtgaggagaaaatttttctaacaGCTCAAATTATAGTTAGGTG------TTAAACAATAATTCTATAGGTATTTTA------------CAAACTAATACTTGTAA--AACTAAGTTAGAATCACTATCTCAATTGCTTTTGATAAGGAATTGAGTTATGGTACCCTCACAAAATCTTGAGGGAAATGTAATTTGTTAAATGCAATTTGGTACCATCTCTCAAAAAAATTTTAATGGTTCTGG------ATTTTGGTATTCACCTAACAATTC----TTTCATTTTTCCACACATGATTATAAATACATCTGTTCATATTTGTTCAATG-AAGCATATT-GGTAGTAGA---CTGCTTAAAACAGAAATATGCCAAAT-----ACTCCTCAAATAGATGGTGGTATTTTGATTCTATGCAATAGTATGTGATCCTTCATCAAAATGAGTTGGATTTCTGTGTAAAAATCTAAGACGTTATTAACG-GGGGGGGAGTAGGGGAGGGGGAGCCTATGAAC-AGAAATGATTGAATAAAGGTTTAAATAAAATCCATATATGTGAATTTGAacacacacacacatatatatatacacacacaTTCAAATTCTTATAAAATGATAGAAGAAA--ATAGGTATTAAAATGGTAACAGTGGTTA--CTACTAA------AGATCAGTACAG-------ATTTAAAATCAGACGAAGAGAACTATGGGGGGTGAGGGATTACTTTTAAATCTACACAATTCTACATTTTTTCAGCTATATTATTCAAGGATTGCTTGTGTAATTATTTTAAAAAAATGAAACAAAACAAAAACACA-AGTTTGTCTGCCTTTTTGTTGTAAGAAC--------CATCTCACATGGAAAGTGCTGCCT---------GAGA-GCTCATGGACT--ATTTATTCTC--------------------TTAAAAA-CTCTATATATTCTCCACA--------------------------ACTAGAAATAGGTA------------TATGTGTGAAAATGAGCTGCTATATTTTGAATGTTCTTAAGATTTTATTTATAAAGTAAATAAA--CAAGGCTAAGCCAATATTG
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1687.000000
s hg38.chr14_KI270725v1_random     10739 14 +    172810 TAAAAAAAA----------TTAAT
s panTro4.chr3                 201682929 24 - 202329955 taaaaaaaaaaaaaaaaaattaaa
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69662429 23 + 202140232 taaaaaaaa-aaaaaaaaattaat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67592262 19 +  86207423 TAAAAAAAA-----AAAAATTAAA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61849264 20 + 192599291 taaataaat---aaataaataaa-
i rheMac3.chr2                 I 4 C 0
s macFas5.chr2                  61005260 20 - 192460366 taaataaat---aaataaataaa-
i macFas5.chr2                 I 4 C 0
s papAnu2.chr2                  59565162 20 + 187378091 taaataaat---aaataaataaa-
i papAnu2.chr2                 I 8 C 0
s mm10.chr6                     45782633 13 - 149736546 ----------CAGAAAAACCTAA-
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16608693 13 +  58134056 ----------AAAAGGAATTAAA-
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46062824  0 -  98464013 C
e chlSab2.chr22                 64500959 48 - 101219884 I

a score=616485.000000
s hg38.chr14_KI270725v1_random     10753 169 +    172810 CCTAAGTCTACATGAACTTAGCTGGGTACCAGTTGAGATATTTGAAGTTTAT-CTACCCTGTAGTCCTCACATTTAAAATTTTTC---TCAATAGTTGAATGTAAGTTATTTACTTCTGGATTGAACAATAAAATGTAAATGGAGGTT------TCCAGGAAGATGAATT-GAGTGTGCC
s panTro4.chr3                 201682953 169 - 202329955 CCTAAGTCTACATGAACTTAGCTGGGTACCAGTTGAGATATTTGAAGTTTAT-CTACCCTGTAGTCCTCACATTTAAAATTTTTC---TCAATAGTTGAATGTAAGTTATTTACTTCTGGATTGAACAATAAAATGTAAATGGAGGTT------Tccaggaagatgaact-gagtgtgcc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69662452 169 + 202140232 CCTAAGTCCACATGAACTTAGCTGGGTACCAGTTGAGATATTTGAAGTTTAT-CTACCCTGTAGTCCTCACATTTAAAATTTTTC---TCAATAGTTGAATGTAAGTTATTTACTTCTGGAGTGAACAATAAAATGTAAATGGAGGTT------TCCAGGAAGATGAATT-GAGTGTGCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67592281 169 +  86207423 CCTAAGTCTACATGAACTTAGCTGGGTACCAGTTGAGATATTTGAAGTTAAT-CTACCCTGTAGTCTTCACATTTAAAATTTTTC---TCAGTAGTTGAATGTAAGTTATTTACTTCTAGATTGAACAATAAAATGTAAATGGAGGCT------TCCAGGAAGAGGAATT-GAGCGTGCC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61849284 169 + 192599291 CCTAAGTCTACATGAACTTAGTTGGGTACCAGTTGAGATATTTGAAGTTTAT-CTACCCTGTAGTCCTCACACCTAAAATTTTTC---TCAATCGTTGAATGTAAGTTATTTACTTCTGGATTGAACAATAAAATGTAAATGGAGGTT------TCCAGGAAGATGAATT-GAGTGTGCC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61005280 169 - 192460366 CCTAAGTCTACATGAACTTAGTTGGGTACCAGTTGAGATATTTGAAGTTTAT-CTACCCTGTAGTCCTCACACCTAAAATTTTTC---TCAATCGTTGAATGTAAGTTATTTACTTCTGGATTGAAAAATAAAATGTAAATGGAGGTT------TCCAGGAAGATGAATT-GAGTGTGCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59565182 169 + 187378091 cctaagtCTACATGAACTTAGTTGGGTACCAGTTGAGATATTTGAAGTTTAT-CTACCCTGTAGTCCTCACACCTAAAATTTTTC---TCAATCGTTGAATGTAAGTTATTTACTTCTGGATTgaacaataaaatgtaaatggagGTT------TCCAGGAAGATGAATT-GAGTGTGCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64501007 169 - 101219884 CCTAAGTCTACATGAACTTAGTTGGGTACCAGTTGAGATATTTGAAGTTTAT-CTACCCTGTAGTCCTCACACCTAAAATTTTTC---TCAATAGTTGAATGTAAGTTATTTACTTCTGGATTGAACAATAAAATGTAAATGGAGGTT------TCCAGGAAGATGAATT-GAGTGTGCC
i chlSab2.chr22                I 48 I 14
s calJac3.chr15                 46062824 149 -  98464013 --------------------AGTGGGTACCattttaaatatttaaattttat-CTACCCTGTAGTCTTCCCAGTTAAAATTTTTC---TTAATCTTTGAATATAAGTTATTTATTTCTGGATTAAACAATAAAATGTAAATGGAGGTT------TCCAGGAAGATGAATT-AAGTGTGCC
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45782646 179 - 149736546 CCTTAGTTTGCATTAATTTACTTGAGTGCTGGCTGAAATGTTTGTACTCTGTGGTATTTTGTTGTCATCAGAGTTGGAACCTTCCATTTCAACAACTTACTTTAAATAATGGACTTGCTGATGGAATGGTAGAATATACATGAAATATATATTATATATAAAGATAAAGT-GAGGATGCC
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16608706 173 +  58134056 CTTAAGTCAGCATTAATTTAGTTGTGTACACTTTGCAATATTTGTATTTTAT-CTGCCCTATCATCCTCACATTTAAAATGTTCCTCCTCAACAGTTTAGTGTTAGGTATATATTTACTGTTGGAACAAGGAAATGCAAATGGAGGTT------TCCAGGAAGATGAAATGGAGTGTGCC
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=10342.000000
s hg38.chr14_KI270725v1_random     10922 3 +    172810 ATA
s panTro4.chr3                 201683122 3 - 202329955 ata
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69662621 3 + 202140232 ATA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67592450 3 +  86207423 ATA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61849453 3 + 192599291 ATA
i rheMac3.chr2                 C 0 I 11
s macFas5.chr2                  61005449 3 - 192460366 ATA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59565351 3 + 187378091 ATA
i papAnu2.chr2                 C 0 C 0
s calJac3.chr15                 46062973 3 -  98464013 ACA
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45782825 3 - 149736546 ATA
i mm10.chr6                    C 0 I 3
s canFam3.chr20                 16608879 3 +  58134056 ACA
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e chlSab2.chr22                 64501176 14 - 101219884 I

a score=3293.000000
s hg38.chr14_KI270725v1_random     10925 2 +    172810 ct
s panTro4.chr3                 201683125 2 - 202329955 ct
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69662624 2 + 202140232 ct
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67592453 2 +  86207423 TT
i nomLeu3.chr21                C 0 I 9
s macFas5.chr2                  61005452 2 - 192460366 TT
i macFas5.chr2                 C 0 I 9
s papAnu2.chr2                  59565354 2 + 187378091 TT
i papAnu2.chr2                 C 0 I 9
s calJac3.chr15                 46062976 2 -  98464013 TT
i calJac3.chr15                C 0 I 9
s canFam3.chr20                 16608882 2 +  58134056 TT
i canFam3.chr20                C 0 I 7
e mm10.chr6                     45782828 3 - 149736546 I
e rheMac3.chr2                  61849456 11 + 192599291 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e chlSab2.chr22                 64501176 14 - 101219884 I

a score=3153.000000
s hg38.chr14_KI270725v1_random     10927 6 +    172810 gcctgc
s panTro4.chr3                 201683127 6 - 202329955 gcctgc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69662626 6 + 202140232 gcctgc
i ponAbe2.chr3                 C 0 C 0
s canFam3.chr20                 16608891 6 +  58134056 GCTTGC
i canFam3.chr20                I 7 C 0
e mm10.chr6                     45782828 3 - 149736546 I
e rheMac3.chr2                  61849456 11 + 192599291 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46062978 9 -  98464013 I
e chlSab2.chr22                 64501176 14 - 101219884 I
e papAnu2.chr2                  59565356 9 + 187378091 I
e macFas5.chr2                  61005454 9 - 192460366 I
e nomLeu3.chr21                 67592455 9 +  86207423 I

a score=592351.000000
s hg38.chr14_KI270725v1_random     10933 2218 +    172810 ctctgtaggctccacctctgggggcagggcacagacaaacaaaaagacagcagtaacctctgcagacttaaatgtccctgtctgacagctttgaggagagcagtggtgttcccagcacgcagctggagatctgagaactggcagactgcctcctcaagtgggtccctgacccctgacccccgagcagcctaactgggagtcaccccccagtaggggcagactgacacctcacacag-cgggtactcctctgagacaaaacttgcagaggaacgatcagacagcagcattcgcggttcatgaaaatccgctgttctgcagccaccgctgctggtacccaggcaaacagcgtctggagtggacctctagcaaactccaacagacctgcagctgagggtcctgtctgttagaaggaaaactaacaaacagaaaggacatccacaccaaaaacccatctgtacatcaccatcatcaaagaccaaaagtagataaaaccacaaagatggggaaaaaacagagcagaaaaactggaaactctaaaaagcagagcgcctctcctcctccaaaggaacgcagctcctcaccagcaacagaacaaagctggacagagaatgacttcaacgagtcgagagaagaaggcttcagatgatcagactactccaagctacaggaggaaatccaaaccaaaggcaaagaagttgaaaactttgaaaaaaatttagacgaatgtataactagaataaccaatacagagaagtgctttaaaggagctgatggagctgaaagccaaggctcaagaactacgtgaagaatgcagaagcctcaggagccaatgcgatcaactggaagaaagggtatcagtgatggaagatgaaatgaatgaaatgaagcgagaagggaagtttagagaaaaaagaataaaaagaaacaaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacatctgattggtgtacctgaaagtgacggg-agaatggaaccaagttggaaaacactctgcagggtattatccaggagaacttccccaatctagcaaggcaggccaacattcagattcaggaaatacagagaacaccacaaagatactcctcgagaagagcaactccaagacacgtaattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcaggttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaaccctacaagccagaagagagtgggggccaatatttaacattcttaaagaaaagaattttcaacccagaatttcatatccagcctaactaagcttcataagtgaaggagaaataaaatactttacagacaagcaaatgctgagagattttatcaccaccaggcctgccctaaaagtgctcctgaaggaagcactaaacatggaaaggaacaaccggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcatcatgacaggatcaacttcacacataacaatattaactttaaatgtaaatggattaaatgctccaactaaaagacacagactggcaaattggataaagagtcaagacccaacagtgtgctgtattcaggaaactcatctcacatgcagagacacacataggctcaaaatgaaaggatggaggaagatctaccaagcaaatggaaaacaaaaaaaggcagggtttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacacaatacaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaacattagacagatcaatgagacagaaagttaacaaggatacccaggaattgaactcagctctgcaccaagtggacctaatcgacatctgcagaactctccaccccaaatcaacagaatatacattttttcagcaccacaccacacctattccaaaattgaacacatagttggaagtaaagctctcc
s panTro4.chr3                 201683133 2216 - 202329955 ctctgtaggctccacctctgggggcagggcacagacaaacaaaaagacagcagtaacctctgcagacttaaatgtccctgtctgacagctttgaagagagcagtggtgttcccagcatgcagctggagatctgagaactggcagactgcctcctcaagtgggtccctgacccctgacccccgagcggcctaactgggaggcatcccccagtaggggcagactgacacctcacacag-cgggtactcctctgagacaaaactttcagaggaacgatcagacagcagcattcgcggttcatgaaaatccgctgttctgcagccaccgcggctggtacccaggcaaacagggtctggagtggacctctagcaaactccaacagacctgcagctgagggtcctgtctgttagaaggaaaactaacaaaaagaaaggacatccacaccaaaaacccatctgtacatcaccatcatcaaagaccaaaagtagataaaaccacaaagatggggaaaaaacagagcagaaaaac--gaaactctaaaaagcagagcgcctctcctcctccaaaggaacgcagctcctcaccagcaacggaacaaagctggacggagaatgactttgacgagtcgagagaagaaggcttcagatgatcagactactccaagctacaggaggaaatccaaaccaaaggcaaagaagttgaaaactttgaaaaaaatttagacgaatgtataactagaataaccaatacagagaagcgctt-aaaggagctgatggagctgaaaaccaaggctcgagaactacgtgaagaatgcagaagcctcaggagccaatgcgatcaactggaagaaagggtatcagtgatggaagatgaaatgaatgaaatgaagcgaaaagggaagtttagagaaaaaagaataaaaagaaacaaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacggggagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcaggttacccacaaagggaagcccatcagactaacagcagatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcataaccagccaaactaagcttcataagtgaaggagaaataaaatactttacagacaagcaaatgctgagagattttgtcaccaccaagcctgccctaaaagtgctcctgaaggaagcactaaacatggaaaggaacaaccggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaatcaccagctaacatcataatgacaggatcaaattcacatataacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaactcatctcacgtgcagagacacacataggctcaaaataaaaggatggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaggggttgcaatccacgtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacaataacaatgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggatacccaggaattgaactcagctctgcaccaagcggacctaatagacatctacagaactctccaccccaaatcaacagaatatacatttttttagcaccacaccacacctattccaaaattgagcacatagttggaagtaaagctctcc
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69662632 2218 + 202140232 ctctgtaggctccacctctgggggcagggcacagacaaacaaaaagacagcagtaacctctgcagacttaaatgtccctgtctgacagctttgaagagagcagtggttttcccagcatgcagctggagatctgagaatggggagactgcctcctcaagtgggtccctgacccctgacccccgagcagcctaactgggaggcaccccccagcaggggcagactgacacctcacacggccgggtaatcctctgagacaaaacttccagaggaacgatcagacagcagcatttgcggttcacgaaaatccgctgttctgcagccaccactgctggtacccaggcaaacagagtctggagtggacctctagcaaactccaacagacctgcagctgacggtcctgtctgttagaaggaaaactaacaaacagaaaggacatccacaccaaaatcccatctgtacatcaccatcatcaaagaccaaaagtagataaaaccacaaagatggggaaaaaacagagcagaaaaactggaaactctaaaaagcacagcgcctctcctcctccaaaggaacacagctcctcaccagcaacggaacaaagctggatggagaatgactttgacgagtcgagagaagaaggcttcagacgatcaaagtactccgagctacaggaggaaattcaaagcaaaggcaaagaagttgaaaactttgcaaaaaatttagacgaacgtataactagaataaccaatacagagaagtgctt-aaaggagctgatggagctgaaagccaaggcttgagaactacgtgaagaatgcagaagcctcaggagctgatgcgatcaaatggaagaaagggtgtcagccctggaagatgaaatgaatgaaatgaagcgagaagggaagtttagagaaaaaagaataaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctatgtctgattggtgtacctgaaagtgacggggagaatggaaccaagttggaaaacactcggcaggatattatccaggagaacttccccaatctagcaaggcaggccaacattcagattcaggaaatacagagaatgccacaaagatactcctcgagaagagcaactccaagacgcataattgtcagattcaccaaagttgaagtgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccgcaaagggaagcccatcagactaacagcagatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaatccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgaggctaggaagagactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacatataacaatattgactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacatgcacagacacacataggctcaaaataaaaggatggaggaagatctaccaagcaaatggaaaacaaaaaaagacaggggtggcaatcctagtctctgataaaacagactttaaaccaacaaacatcaaaagagacaaagaaggccattacat-atggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaaaacaggagcaaccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacaataataaagggagactttaacaacccactgtcaacattagacagatcaacgagccagaaagttaacaaggatacccaggaattgaactcagctctgcaccaagcggaactaatagacatctacagaactctccaccccaaatcaacagaatatacattttttcagcaccacaccacacctattccaaaattgaccacatagttggaagtaaagctctcc
i ponAbe2.chr3                 C 0 C 0
e mm10.chr6                     45782828    3 - 149736546 I
e canFam3.chr20                 16608897    0 +  58134056 C
e rheMac3.chr2                  61849456   11 + 192599291 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46062978    9 -  98464013 I
e chlSab2.chr22                 64501176   14 - 101219884 I
e papAnu2.chr2                  59565356    9 + 187378091 I
e macFas5.chr2                  61005454    9 - 192460366 I
e nomLeu3.chr21                 67592455    9 +  86207423 I

a score=2163.000000
s hg38.chr14_KI270725v1_random     13151 7 +    172810 tcagcaa
s panTro4.chr3                 201685349 7 - 202329955 tcagcaa
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69664850 7 + 202140232 tcagcaa
i ponAbe2.chr3                 C 0 C 0
s mm10.chr6                     45782831 7 - 149736546 TTAATAT
i mm10.chr6                    I 3 C 0
e canFam3.chr20                 16608897 0 +  58134056 C
e rheMac3.chr2                  61849456 11 + 192599291 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46062978 9 -  98464013 I
e chlSab2.chr22                 64501176 14 - 101219884 I
e papAnu2.chr2                  59565356 9 + 187378091 I
e macFas5.chr2                  61005454 9 - 192460366 I
e nomLeu3.chr21                 67592455 9 +  86207423 I

a score=14859.000000
s hg38.chr14_KI270725v1_random     13158 4 +    172810 ttgt
s panTro4.chr3                 201685356 4 - 202329955 ttgt
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69664857 4 + 202140232 ttgt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67592464 4 +  86207423 TTGT
i nomLeu3.chr21                I 9 C 0
s rheMac3.chr2                  61849467 4 + 192599291 TTGT
i rheMac3.chr2                 I 11 C 0
s macFas5.chr2                  61005463 4 - 192460366 TTGT
i macFas5.chr2                 I 9 C 0
s papAnu2.chr2                  59565365 4 + 187378091 TTGT
i papAnu2.chr2                 I 9 C 0
s chlSab2.chr22                 64501190 4 - 101219884 TTGT
i chlSab2.chr22                I 14 C 0
s calJac3.chr15                 46062987 4 -  98464013 TTGT
i calJac3.chr15                I 9 C 0
s mm10.chr6                     45782838 4 - 149736546 TTGA
i mm10.chr6                    C 0 C 0
e canFam3.chr20                 16608897 0 +  58134056 C
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=4491110.000000
s hg38.chr14_KI270725v1_random     13162 1072 +    172810 CTATGTTTTTATGTAGTCTGTAATACTTTCCTCTTATAGACCAAACTTCAGGTTTTTTAGGAAAAGTTGGAGCTCTGTGCATTATGCCCCACCAGCTTCAGGTTCCGTTGTCAACCTACCCCATATGTATAAACCATCTGTTTGTCATGTTTTGGCTTTATCCAAACATCTTCACAAAGAGGCCATCCGTTCCCTTCTTTTAGATATCTATTTATGGCACTTTCTCTCTTATCTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTAC-TAGTCACATATTAGTATGTCGTCTACTCAGGAGGAGTCTTA-------------GTGATCCAAAGTGCATGGATAGTACCGAgagactgatagatct-atctaaaatgaaggg--tatggacattgccataaaagccTCACAATGCATGAAATGGATAATAGATGTGAGATTCCCTGGGGAGCTGTGTGCACGTGACTTCCAAAACGCTGTCATTTCACTATGTAGAAGGACAATATGAATTTACATGGAAATTTATTTCCACCATCAGTAATATA-TTCCTATTGCAAATGTACATTTTAGAGAAAGTATATTTTCAGTTGAAGTGAAAAAAAA---------GAG-ATGCACAAATAGATGTTTGAATGGCATTTGTATAATTCTGGGTCAAGTTTTTAGGACAAGCTTACC-AAAGAAATTTTTAAGGTTAAATAAAAAGCAAACTTTTAGTGTATCAGGGTGTTTGCTAAAAGCAGAGCACTGTGACAAACATAAAAAGCAGAAACATTAAAAGCAGAAAACTCTTTATTTTCTCTGCTTCCCTGGGAGAAAAACACCAACAGAAGAATTCGGTAGAT-AAATGATGTTTCCAACTGTGTTGGGAACTTGGAGTTGTGAGATTACAATTGGGACCACAGATTCAGACACCATCATCACCAACTATTTTTGTTCACATTTAAAAATAAAAAGTCAAAAGAAATTTACTAAA-----------------------------ATCTGTATATGTCTGGTTACATGTTTATATGGTTAAAATTTAATATATATACTT-----TTATATAACTGCATTA----TCTATCAATGTATTTATACATCTGTAACTTTTATCTACAAATAT--
s panTro4.chr3                 201685360 1073 - 202329955 CTATGTTTTTATGAAGTCTGTAATACTTTCCTCTTATAGACCAAACTTCAGGTTTTTTAGGAAAAGTTGGAGCTCTGTGCATTATGCCCCACCAGCTTCAGGTTCCATTGTCAACCTACCCCATACGTATAAACCATCTGTTTGTCATTTTTTGGCTTTATCCAAACATCTTCACAAAGAGGCCATCTGTTCCTTTCTTTTAGATATCTATTTATGGCACTTTCTCTCTTATCTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTAC-TAGTCACATATTAGTATGTCATCTACTCAGGAGGAGTCTTA-------------GTGATCCAAAGTGCATGGGTAGTACCGAGAGACTGACAGATCT-ATCTAAAATGAAGGG--TATGGACATTGCCATAAAAGCCTCACAATGCATGAAATGGATAATAGATGTGAGATTCCCTGGGGAGCTGTGTGCACGTGACTTCCAAAAAGCTGTCATTTCACTATGTAGAAGGACAATATGAATTTACATGGAAATTTATTTCCACCATCAGTAATATA-TTCCTATTGCAAATGTACATTTTAGAGAAAGTATATTTTCAGTTGAAGTGAAAAAAAA--------AGAG-ATGCACAAATAGATGTTTGAATGGCATTTGTATAATTCTGGGTCAAGTTTTTAGGACAAGCTTACC-AAAGAAATTTTTAAGGTTAAATAAAAAGCAAACTTTTAGTGTATCAGGGTGTTTGCTAAAAGCAGAGCACTGTGACAAACATAAAAAGCGGAAACATTAAAAGCACAGAACTCTTTATTTTCTCTGCTTCCCTGGGAGAAAAACACCAACAGAAGAATTCGGTAGAT-AAATGATGTTTCCAACTGTGTTGGGAACTTGGAGTTGTGAGATTATAATTGGGACCACAGATTCAGACACCATCATCACCAACTATTTTTGTTCACATTTAAAAATAAAAAGTCAAAAGAAATTTACTAAA-----------------------------ATCTGTATATGTCTGGTTACATATTTATAAGGttaaaatttaatatatatactt-----ttatataaCTGCATTA----TCTATCAATGTATCTATACATCTGTAACTTTTATCTACAAATAT--
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69664861 1088 + 202140232 CTATGTTTTTATGTAGTCTGTAATACTTTCCTCTTATAGTCCAAACTTCAGGTTTTTTAGGAAAAGTCGGAGCTCTGTGCATTATGCCCCACCAGCTTCAGGTTCCATTGTTAACCTACCCCATACGTATAAACCATCTGTTTGTCATTTTTTGGCTTTATCCAAACATCTTCACAAAGAGGCCATCTGTTCTCTTCTTTTAGTTATCTATTTATGGCACTTTCTGTCTTATCTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTAC-TGGTCACATATTAGTATGTCATCTACTCAGGAGGAGTCTTAGATAAACCTCTGGGTGATCCAAAGTGCATGGGTAGTACCGAGAGACTGATAGATCT-ATCTAAAATGAAGGG--TATGGACATTGACATAAAAGCCTCACAATGCATGAAATGGATAATAGATGTGAGATTCCCTGGGGAGCTGTGTGCATGTGACTTCCAAAAAGCTGTCATTTCACTATGTAGAAAGACAATATGAATTTACATGGAAATTTATTTCCACCATCAGTAATATA-TTCCTATTGCAAATGTACATTTTAGAGAAAGTATATTTTCAGTTGAAGTGAAAAAAAA---------GAG-ATGCACAAATAGATGTTTGACTGGCATTTGTATAATTCTGGGTCAAGTTTTTAGGACAAGCTTACC--AAGAAATTTTTAAGGTTAAATAAAAAGCAAACTTTTAGTGTATCAGGGTGTTTGCTAAAAGCACAGCACTGTGACAAACATAAAAAGCAGAAACATTAAAAGCAGAAAACTCTTTATTTTCTCTGCTTCCCTGGGAGAAAAACACTAACAGAAGAATTCGGTAGAT-AAATGATGTTTCCAACTGTGTTGGGAACTTGGAGTTGTGAGATTATAATTGGGACCACAGACTCAGACACCATCATCACCAACTATTTTTGTTCACATTTAAAAATAAAAAGTCAAAAGAAATTTACTAAA-----------------------------ATCTGTATATGTCTGGTTACATATTTACATGGttaaaatttaatatatatactt-----ttatataaCTGCATTATCTCTCTATCAATCTATCTATACATCTGTAACTTTTATCTACAAATAT--
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67592468 1090 +  86207423 CTATGTTTTTATGTAGTCTGTAATGCTTTCCTCTTATAGTCCAAACTTCAGG-TTTTTAGGAAAAGTTGGAGCTCTGTGCATTATGCCCCACCAGCTTCAGGTTCCATTGTCAACCTACCCCATACGTATAAACCATCTGTTTGTCATTTTTTGGCTTTATCCAAACATCTTCACAAAGAGGCCATCTGTTCCCTTCTTTTGGATATCTATTTATGGCACTTTCTCTCTTATCTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTAC-TAGTCACATATTAGTATGTCATCTACTCAGGAGGAGTCTTGGATAAACCTCTGGGTGATCCAAAGTGCATAGGTAGTACCGAGAGACTGATAGATCT-ATCTAAAATGAAGGG--TATGGACATTGACATAAAAGTCTCACAATGCATGAAATGGATAATAGATGTGAGATTCCCTGGGGAGCTGTGTGCACGTGACTTCCAAAAAGCTGTCATTTCACTATGTAGACGGACAACATGAATTTACATGGAAATTTATTTCCACCATCAGTAATATA-TTCCTATTGCAAATGTACGTTTTAGAGAAAGTATATTTTCAGTTGATGTGGAAAAAAA-------AAGAG-ATGCACAAATAGATGTTTGAATGGCATTTGTATAATTCTGGGGCAAGTTTTTAGGATACGCTCACC-AAAGAAATTTTTAAGGTTAAATAAACAGCAAACTTTTAGTGTATCAGGGTGTTTGCTAAAAGCAGAGCACTGTGATAAACATAAAAAGGAGAAACATTAAAAGCAGAAAACTCTTTATTGTCTCTGCTTCCCTGGGAGAAAAACACCAACAGAAGAATTCGGTAGAT-AAATGATGTTTCCAACTGTGTTGGCAACTTGGAGTTGTGAGATTATAATTGGGACCACAGATTCAGACACCATCATCACCAACTATTTTTGTTCACATTTAAAAATAAAAAGTCAAAAGAAATTTACTAAA-----------------------------ATCTGTATATGTCTGGTTACATATTTATATGGTTAAAATTTAATATATATACTT-----TTATATAACTGCATtatctctctatcaatctatctatacatctGTAACTTTTATCTACAAATAT--
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61849471 1090 + 192599291 CTATGTCTTTATGTAGTCTGTAATGCTTTCCTCTTATAGTCCAAACTTCAGG-TTTTTAGGAAAAGTTGGAGCTTTGTGCATTATACCCCACCAGCTTCAGATTCCATTGTCAACCTACCCCATACATATAAACCATCTGTTTGTCATTTTTTGGCTTTATCCGAACATCTTCACAAAGAGGCCATCTGTTCCCTTCTTTTAGATATCTATTTATGGCACTTTCTCTCTTATCTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTAC-TAGTCACATATTAGTATGTCATCTACTCAGGAGGAGTCTTAGATAAACCGCTGGGTGATCCAAAGTGCATGGGTAGTACCGAAAGACTGATAGATCT-ATCTGAAATGAAGGG--TACGGACATGGACATAAAAGCCTCACAATGCATGAAATGGATAATAGATGTGAGATTCCCTGAGGAGCTCTGTGCACGTGACTTCCAAAAAGCTGTCATTTCACTATGTAGAAGGACAATATGAATTTACATGGAAATTTATTTCCACCATCAGTAATATA-TTCCTATTGCAAATGCACATTTTAGAGAAAGTATATTTTCAGTTGAAGTGAAAAAAAA-------AAGAG-ATGCACAAATAGATGTTTGAACGGCATTTGTATAATTCTGGGGCAAGTTTTTAGGACAAGCTTACC-AAAGAAATTTTTAAGGTTAAATATAAAGCAAACTTTTAGTGTATCAGGGTGTTTGCTAAAAGCAGAGCACTGCGATAAACATAAAAAGCTGAAACATTAAAAGCAGAAAACTCTTTATTGTCTCTGCTTCCCTGGGAGAAAAACACCAACAGAAGAATTCAGTAGAT-AAATGATGTTTCCAACTGTGTTGGGAACTTGGAGTTGTGAGATTATAATTGGGACCACAGATTCAGACACCATCATCACCAACTATTTTTGTTCACATTTAAAAATAAAAAGTCAAAATAAATTTACTAAA-----------------------------ATCTGTATATGTGTGGTTACATATTTGTATGGttaaaatttaatatatatactt-----ttatataaCTGCATTATCTCTCTATCAATCTATCTATACATCTGTAACTTTTATCTACAAATAT--
i rheMac3.chr2                 C 0 M 204
s macFas5.chr2                  61005467 1089 - 192460366 CTATGTCTTTATGTAGTCTGTAATGCTTTCCTCTTATAGTCCAAACTTCAGG-TTTTTAGGAAAAGTTGGAGCTTTGTGCATTATACCCCACCAGCTTCAGATTCCATTGTCAACCTACCCCATACATATAAACCATCTGTTTGTCATTTTTTGGCTTTATCCGAACATCTTCACAAAGAGGCCATCTGTTCCCTTCTTTTAGATATCTATTTATGGCACTTTCTCTCTTATCTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTAC-TAGTCACATATTAGTATGTCATCTACTCAGGAGGAGTCTTAGATAAACCGCTGGGTGATCCAAAGTGCATGGGTAGTACCGAAAGACTGATAGATCT-ATCTGAAATGAAGGG--TACGGACATGGACATAAAAGCCTCACAATGCATGAAATGGATAATAGATGTGAGATTCCCTGAGGAGCTCTGTGCACGTGACTTCCAAAAAGCTGTCATTTCACTATGTAGAAGGACAATATGAATTTACATGGAAATTTATTTCCACCATCAGTAATATA-TTCCTATTGCAAATGCACATTTTAGAGAAAGTATATTTTCAGTTGAAGTG-AAAAAAA-------AAGAG-ATGCACAAATAGATGTTTGAATGGCATTTGTATAATTCTGGGGCAAGTTTTTAGGACAAGCTTACC-AAAGAAATTTTTAAGGTTAAATATAAAGCAAACTTTTAGTGTATCAGGGTGTTTGCTAAAAGCAGAGCACTGCGATAAACATAAAAAGCTGAAACATTAAAAGCAGAAAACTCTTTATTGTCTCTGCTTCCCTGGGAGAAAAACACCAACAGAAGAATTCAGTAGAT-AAATGATGTTTCCAACTGTGTTGGGAACTTGGAGTTGTGAGATTATAATTGGGACCACAGATTCAGACACCATCATCACCAACTATTTTTGTTCACATTTAAAAATAAAAAGTCAAAATAAATTTACTAAA-----------------------------ATCTGTATATGTGTGTTTACATATTTGTATGGTTAAAATTTAATATATATACTT-----TTATATAACTGCATTATCTCTCTATCAATCTATCTATACATCTGTAACTTTTATCTACAAATAT--
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59565369 1089 + 187378091 CTATGTCTTTATGTAGTCTGTAATGCTTTCCTCTTATAGTCCAAACTTCAGG-TTTTTAGGAAAAGTTGGAGCTTTGTGCATTATACCCCACCAGCTTCAGATTCCATTGTCAACCTACCCCATACATATAAACCATCTGTTTGTCATTTTTTGGCTTTATCCGAACATCTTCACAAAGAGGCCATCTGTTCCCTTCTTTTAGATATCTATTTATGGCACTTTCTCTCTTATCTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTAC-TAGTCACATATTAGTATGTCATCTACTCAGGAGGAGTCTTAGATAAACCGCTGGGTGATCCAAAGTGCATGGGTAGTACCGAAAGACTGATA-ATCT-ATCTGAAATGAAGGG--TACGGACATGGACATAAAAGCCTCACAATGCATGAAATGGATAATAGATGTGAGATTCCCTGAGGAGCTCTGTGCACGTGACTTCCAAAAAGCTGTCATTTCACTATGTAGAAGGACAATATGAATTTACATGGAAATTTATTTCCACCATCAGTAATATA-TTCTTATTGCAAATGCACATTTTAGAGAAAGTATATTTTCagttgaagtgaaaaaaaa-------aagag-atgcacaAATAGATGTTTGAATGGCATTTGTATAATTCTGGGGCAAGTTTTTAGGACAAGCTTACC-AAAGAAATTTTTAAGGTTAAATATAAAGCAAACTTTTAGTGTATCAGGGTGTTTGCTAAAAGCAGAGCACTGCGATAAACATAAAAAGCTGaaacattaaaagcagaaaattcttTATTGTCTCTGCTTCCCTGGGAGAAAAACACCAACAGAAGAATTCAGTAGAT-AAATGATGTTTCCAACTGTGTTGGGAACTTGGAGTTGTGAGATTATAATTGGGACCACAGATTCAGACACCATCATCACCAACTATTTttgttcacatttaaaaataaaaagtcaaaataaatttactaaa-----------------------------atcTGTATATGTGTGGTTACATATTTGTAtggttaaaatttaatatatatactt-----ttatataactGCATTATCTCTCTATCAATCTATCTATACATCTGTAACTTTTATCTACAAATAT--
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64501194 1090 - 101219884 CTATGTCTTTATGTAGTCTGTAATGCTTTCCTCTTATAGTCCAAACTTCAGG-TTTTTAGGAAAAGTTGGAGCTTTGTGCATTATACCCCACCAGCTTCAGATTCCATTGTCAACCTACCCCATGCATATAAACCATCTGTTTGTCATTTTTTGGCTTTATTCGAACATCTTCACAAAGAGGCCATCTGTTCCCTTCTTTTAGATATCTATTTATGGCACTTTCTCTTTTATCTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTAC-TAGTCACATATTAGTATGTCATCTACTCAGGAGGAGTCTTAGATAAACCGCTGGGTGATCCAAAGTGCATGGGTAGTATCGAAAACCTGATAGATCT-ATCTAAAATGAAGGG--TACGGACATCGACATAAAAGCCTCACAATGCATGAAATAGATAATAGATGTGAGATTCCCTGAGGAGCTGTGTGCACGTGACTTCCAGAAAGCTGTCATTTCACTATGTAGAAGGACAATATGAATTTACATGGAAATTTATTTCCACCATCAGTAATATA-TTCCTATTGCAAATGCACATTTTAGAGAAAGTATATTTTCAGTTGAAGTGAAAAAAAA-------AAGAG-ATGCACAAATAGATGTTTGAATGGCATTTGTGTAATTCTGGGGCAAGTTTTTAGGACAAGCTTACC-AAAGAAATTTTTAAGGTTAAATATAAAGCAAACTTTTAGTGTATCAGGGTGTTTGCTAAAAGCAGAGCACTGCGATAAACATAAAAAGCTGAAACATTAAAAGGAGAAAACTCTTTATTGTCTCTGCTTCCCTGGGAGAAAAACACCAACAGAAGAATTCAGTAGAT-AAATGATGTTTCCAACTGTGTTGGGAACTTGGAGTTGTGAGATTATAATTGGGACCACAGATTCAGACACCATCATCACCAACTATTTTTGTTCACATTTAAAAATAAAAAGTCAAAATAAATTTACTAAA-----------------------------ATCTGTATATGTGTGGTTACATATTTATATGGTTAAAATTTAATATATATACTT-----TTATATAACTGCATTATCTCTCTATCAATCTATCTATACATCTGTAACTTTTATCTATAAATAT--
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46062991 1084 -  98464013 CTGTGTTTTCATGCAGTCTGTAATGCTTTCCTCTTATAGATTAAACTTCAGT-TTTTTAGGAAAAGCTGGAGCTCTGTGCATTATGCCCCCCTAGCTTCAGGTTCCATTGTCAACCTACCCTATACGTAAGAACCATCTGTTTGTCATTTTTTGGCTTTATCCAAACATCTTCACAAAGAGGCCATCTGTTCCCTTCTTTTAGTTATCTATTTAAGGCACTTTCTGTCTTATTTATTTTACAAC-ATTTTTGCATATGTCAAAAATTCAATTGC-TAGTCACATATTAGTGTGTCATCTACTCAGGAGGAGTCTTAGATAAACCGCTGGGTGATCCAAAGTGCATGGGTAGTACCATTAGACTGAGAGATCT-ATCTAAAGTGAAGGG--TATGGACATTGACATAAAAGTCTCACAAAACATGAAATGGATAATAGATGTGAGATTCCCTGGGGAGCTGTGTGCACATGACTTCCAAAAAGCTGTCATTTCACTATGTAGAAGGACAATATGAATTTACATGGAAATTTATTTCCATCATCAGTAATATA-TTCCTATTGCAAATGTACATTTTAGAGGAAGTATATTTTCAGTTGAAGTGAAAAAAAG--------AGAG-AAGCACAAATAGGTGTTTGAATGGCATTTGTATAATTCCAGGGCAAGTTTTTAGGACAAGCTTACC-AAGGAAATTTTTAAGGTTAAATATAAAGCAATCTTCTAGTATATCAGGATGTCTGCTAAAAGCAGAGCACTATGATAAGCATAGAAAGCAGAAACATTAAAAGCAGCAAACTCTTTATTGTCTCTGCTTCCTTGGGAGAAAAACACCAACAAAAGAATTCGGTAGAT-AAATGATGTTTCCAACTGTGTTGGGAACTTGGAGTTGTGAGATTATATTTGGGTAAACAGATTCAGACACCATCATCACCAACTCTATTTGTTCATATTAGAAAATAAAAAGTCAAAAGAAGTTTACTAAA-----------------------------ATCAGTATATCTGTGGTTACATATTTGTATGATTAAATTTTTGTATATATACTT-----TTATATAACTGCATTA----TCTATCAATCTATCTATACATCTGTAAC-TTTATCTACAAATAT--
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45782842 1093 - 149736546 CTGTATTTACACTTACTCTGAAATGCTTTCCGTTTCTGGTCCAAATTCCAAGATTTTTATGAAAAGCTGGAACCCTGTCCACTCAGTCCCTCCAGCTTTGGTTGCCTTCATCAACATATCACATATGTATAAACCATCTGTT----ATCTTTTGGCTTTATCTGAACATCTTCTCAAAGAGGCCATCTGGACCCTTTCTTTAAATATCTATTAAT-GTGCTTCTTCTCTTATCTATTTTACAAC-TTTTTTGCATATGTCAAAAATTCAATTACATAGCCACATATTAGTATGTCATGGACTCAGGAGGAGACTAAGACAAACTCCTGGGAG-CCCAAAGTTCATGCATAGTACTGAGAGACTAAAA-ACCC-ATCTATAATGGGGGT--GGGGCATATGAACATAAAAGCTTTACAATGCATGAAATTGATAATAGATGTGAGATTCCCTGGAGAGACTTATGCACATGATTTCCAAAAGGCTGTCATTTAACTGTGGAGA---ACAATATGAATTTACATTGAAATTTATTTCCACTATCAAGGCTGTGTTTCTTTTTGCAAATGTGCACTTTGAAGGAAACCTACTTTTAGTAGAAGTAGTGCAAAA-------GAAAGAAAGCACAAATAGATGTTTTAATGGAACTTGTACAATTCTGGAACAACTTTTTAGGACAGGCTTATC-AAAGAAATTTCTGAGGTTAAATAGGAAGCAGACTTTTAATGTTTGAGGGTGTTTGCTGAAAGCAGAATGCTGTGATGAACTTGAAAAGGAGAAACATTAAAAGCAGTGAGCGCTTTAT--TTTCTGTTTCCCCAAGAGCAAAGCTCCAAGAG-AGAGTTCTGGAGATAAAATGATACTTCCAGCTGTGCTTGGAGTTCAGAGTGGCGAGATTATAATTGGGACAACAGGTTCAAACACTGTCATCACCAACTCTTTTTGTTCACATTAAAAAGTAAAAA--CAACAACAAACTATTAAATTcacatatgtatatatgtatatatatgcatatatacatatgtgaatatatatatgtaTGATTAAAA---AGGTCACAGATAT-----TTATG-AACTGCATTA------------AGTATTTGGAAATTTGCAACTTTTTTCTAGAAATTG--
i mm10.chr6                    C 0 I 2
s canFam3.chr20                 16608897 1098 +  58134056 CTGTGTTTTCATGTGGTCTATAACGCTTTCATCTGACAATCCAAACTCCAGT-TTTTTAGGAAATGTTGGAGCTCTGTCCATTCCGCCCCACGAGCTTCAGGTTCCCTCATCAACCTACCCCATACATATAAACCATCTGTTTGTGATTTTTCGGCTTTATCTGAACATCTTCACAAAGAGGCCATCTGTTCCCTTCTTTTAAATATCTATTTACAGTACTTTCTCTCTTACCGACTTTACAACTATTTTTGCATATGTCAAAAATTCAATTACACAGTCACATATTAGTATGTCATCTTCTCTGGAGAGGTCTTAGACAAATTCCTGGGCGATCCAAAGAGCAAGGATAATACTAAGAGGCTAAAAAATTTCACCTAAAAGCAAGGGGTGGGGGACACAAAAATAAAAGTCTCACAATGCATGAAATCAATAATAGATCAGAGATGTCCTGGAGAGCC-TGTGCACATGATTTCCAAAAAGCTGTTACTTCACTATGTACAAGAACAATATGAATTTGCATTGAAATTTATTTCTGCCATTAGTAATATA-TGCCTATTGCAAATGTGCACTTTAGGGTAAGTATACTTTCAGTTGAAATAGAAAAAAAGAGAGAAAAGAA-AAGCACAAATAGATGTTTCAACAGCATTTGTATAATGCTGGGGCAAGTTTTTAGGACCAGCTTACCGAAGGAAATTCCTAAGGTTAAATATGAAGCAAACTTTTAATGTGTGGGGGTGTTTGCTAAAAGCAGAACACTATGATGGACGTAAAAAGCTGAAACATTAAAGGCAGTCAGCTCTTTATTTTCTCTGCTTCCCTAGGAGCAAAACACCAGCAGAAGAATTCTGCAGAT-AAATGGTATTTCCAACTATGTTGGGAGCTCAAAGTTGTGAGATTATAATTGGGACAACAGATTCAGATACCATCA-CACCAGCTCTTTTCACTCACATTTAAAAATAAAAGTTTAAAAAGAATTTACTAAA-----------------------------AGTCCCGTGTGTGTATATAATCATATATATGATTAAAGTTTCATATATGTATATATATACTATATAACTGCATAA--------TCAA--TATCTATAAATGTGTAACTTTTACCTACATAGATCT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=291555.000000
s hg38.chr14_KI270725v1_random     14234 142 +    172810 GTTTCCAAGTTCTATGGATAATAG-----ATGAGCAAATCAATTACATATGAAGGTTATCTAATAAACATTATCAAATTTATTTAGACATCAACAC-----TTGCAGGAAGATTTTG-------GTATAATAAA-atagac---agac----------------agatagatagataga
s panTro4.chr3                 201686433 129 - 202329955 GTTTCCAAGTTCTATGGATAACAG-----ATGAGCAAATCAATTACAAATGAAGGTTATCTAATAAACATTAT-AAATTTATTTAGACATCAACAC-----TTGCAGGAAGATTTTG-------GTATAATAa--------------------------------gatagatagataga
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69665949 130 + 202140232 GTTTCCAAGTTCTATGGATAACAG-----ATGAGCAAATCAATTACAAATGAAGGTTACCTAATAAACATTATCAAATTTATTTACACATCAACAC-----TTGCAGGAAGATTTTG-------GTATAATAa--------------------------------gatagatagataga
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67593558 137 +  86207423 GTTTCCAAGTTCTATGGATAATAG-----ATGAGCAAATCAATAACAAATGAAGAGTATCTAATAAACATAATCAAATTTATTTAGACATCAACAC-----TTGCAGGAAGATTTTG-------GTATAATAAA-atagat------------------------gatagatagataga
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61006556 160 - 192460366 ATTTCCAAGTTCTATAGATAATAG-----ATGAGCAAATCAATAACAAATGAAGGGTATCTAATAAACATTATCAAATTTATTTAGACATCAACAC-----TTGCAGGAATA-TTTG-------ATATAATAAA-ATAGATATTAGACAGGCagatagatagatagatagatagataga
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59566458 144 + 187378091 GTTTCCAAGTTCTATAGATAATAG-----ATGAGCAAATCAATAACAAATGAAGGGTATCTAATAAACATTATCAAATTTATTTAGACATCAACAC-----TTGCAGGAATA-TTTg-------atataataaa-atagatattagac----------------agatagatagataga
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64502284 141 - 101219884 ATTTCCAAGTTCTATAGATAATAG-----ATGAGCAAAGCAATAACAAATGAAGGGTATCTAATACACATTATCAAATTTATTTAGACATCAACAC-----TTTCAGGAATA-TTTG-------ATATTATAAA-ATAGATAATA-------------------AAatagatagataga
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46064075 134 -  98464013 ATTTCCAAGCTCTATGGATAATAG-----GTGAGCAAATCAATAACAAATGAAGGGTATCTAATAAAAATTATTAAATTCATTTAGACATCAGCAT-----TTGCAAGAAGATTTTG-------GTATAATAAT-atagat------------------------gatag---gatagc
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45783937 126 - 149736546 GTTTTGAAGTTACACCAATGATAG-----GCGATCAAGTCATAAACAGG-GAAGTATAGATCACAAATCCTCTTAAATGCAGTGAGACAGCAGTGC-----TTATATGAGGGTACTG-------CTTTAGCAA--------------------------------AACCAATAGTT---
i mm10.chr6                    I 2 C 0
s canFam3.chr20                 16609995 179 +  58134056 ATTTCCAAATTGCATGTATCATAGAAGAAATGAACAAATCAAGAAAAAATGCAATATATCTAACAAACATAATTAATTTTATTTAGATATCAACACTTCttttttcttaagattttatttatttatttgacagagatagagcacaagtaggcaaagcagctgtcagagagagagggaga
i canFam3.chr20                C 0 I 144
e rheMac3.chr2                  61850561 204 + 192599291 M
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=52259.000000
s hg38.chr14_KI270725v1_random     14376 33 +    172810 tagatagatagatagatagatagatagatagat
s panTro4.chr3                 201686562 33 - 202329955 tagatagatagatagatagatagatagatagat
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666079 25 + 202140232 tagacagatgtatagatagatagat--------
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67593695 33 +  86207423 tagatagatagatagatagatagatagatagat
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61006716 33 - 192460366 tagatagatagatagatagatagatagatagaA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59566602 33 + 187378091 tagatagatagatagatagatagatagatagat
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64502425 27 - 101219884 tagatagatagatagatagatagatag------
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46064209 27 -  98464013 tagctagatagatcaatcgatagatag------
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45784063  9 - 149736546 ----------------TGGGTAGAT--------
i mm10.chr6                    C 0 C 0
e canFam3.chr20                 16610174 144 +  58134056 I
e rheMac3.chr2                  61850561 204 + 192599291 M
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=7376.000000
s hg38.chr14_KI270725v1_random     14409 13 +    172810 agataaggtagat
s panTro4.chr3                 201686595 10 - 202329955 a---AAGGTAGAT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666104  9 + 202140232 ----agggtagat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67593728  9 +  86207423 ----tagatagat
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61006749 12 - 192460366 AACTTA-GTAAAT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59566635 13 + 187378091 aacttaggtaaat
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64502452 11 - 101219884 --CTTAGGTAAAT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46064236 11 -  98464013 --cttaggaagat
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16610318 13 +  58134056 TGATAAAATTGAT
i canFam3.chr20                I 144 C 0
e mm10.chr6                     45784072  0 - 149736546 C
e rheMac3.chr2                  61850561 204 + 192599291 M
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=325473.000000
s hg38.chr14_KI270725v1_random     14422 127 +    172810 -aggctagatagTTCAACACAAAAT---GTTAA--------CATAAAATATGACAAAGGCATTGGAATA-------GAAATAAAGCAAATATGT-TAAACATAACTGTAGCTTTGAGAAAGCATAAAGCAAGCCTGAATAAAAACTT
s panTro4.chr3                 201686605 127 - 202329955 -AGGCTAGATAGTTCAACACAAAAT---GTTAA--------CATAAAATATGACAAAGGCATTGGAATA-------GAAATAAAGCAAATATGT-TAAACATAACCGTAGTTTTGAGAAAGCATAAAGCAAGCCTGAATAAAAACTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666113 127 + 202140232 -agactagataATTCAACACAAAAT---GTTAA--------CATAAAATATGACAAAGGCATTGGAATA-------GAAATAAAGCAAATATGT-TAAACATAACCATAGCTTTGAGAAAGCATTAAGCAAGCCTGAATAAAAACTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67593737  78 +  86207423 -agGCTGCATAGTTC-------------------------------------------------------------------AAGCAAATATGT-TAAACATAACCGTAGCTTTGAGAAAGCATAAAGCAAGCCTGAATAAAAACTT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61850768 127 + 192599291 -AGGCTAGATAGCTCAACACAAAAT---GTTAA--------CATAAAATATGACAATGGCATTGGAATA-------GAAATAAAGCAGATATGT-TAAACATAACCATAGCTTTCAGAAAGCATAAAGCAAGCCTGAATAAAAACTT
i rheMac3.chr2                 M 204 C 0
s macFas5.chr2                  61006761 127 - 192460366 -AGGCTAGATAGCTCAACACAAAAT---GTTAA--------CATAAAATATGACAATGGCATTGGAATA-------GAAATAAAGCAGATATGT-TAAACATAACCATAGCTTTCAGAAAGCATAAAGCAAGCCTGAATAAAAACTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59566648 127 + 187378091 -aggctagatagCTCAACACAAAAT---GTTAA--------CATAAAATATGACAAAGGCATTGGaata-------gaaataaagcaaatatgt-tAAACATAACCATAGCTTTCAGAAAGCATAAAGCAAGCCTGAATAAAAACTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64502463 127 - 101219884 -AGGCTAGATAGCTCAACACAAAAT---GTTAA--------CATAAAATATGACAAAGGCATTGGAATA-------GAAATAAAGCAAATATGT-TAAACATAACCATAGCTTTCAGAAAGCATAAAGCAAGCCTGAATAAAAACTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46064247 112 -  98464013 -aggctaggtaggtagacaCAAAAA---GTTAC--------CATAAAACATGACAAAGGCATTGCAATC-------GAACAAAGGCAATTATGT-TAAACATAACAGTAGCTTTGAGAAAGCCTAAAGTAGG---------------
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45784072  98 - 149736546 -------------------------------------------------TTGTCAGTGGTAATGTACTATTGCCGTAAAACAAGGCAAACATTTCTAAGAATAGCAGAGGCAGTGAGAAGACATAAATAAAGGCTGCAACCAAACTC
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16610331 136 +  58134056 AGGGAGAAAGAG---AACACAAAATCGAGATAAAAAAAACCCACAAAATATGAAAAAGTTGTCGCAATT-------TTAAAAAGGCAACTATGC-TAAGTATAACAGTAGCTGTGAGCCAGTATAAAGCAAGCCAAGACTGAAACTT
i canFam3.chr20                C 0 I 1
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=4190.000000
s hg38.chr14_KI270725v1_random     14549 1 +    172810 C
s panTro4.chr3                 201686732 1 - 202329955 C
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666240 1 + 202140232 C
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67593815 1 +  86207423 C
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61850895 1 + 192599291 C
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  61006888 1 - 192460366 C
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59566775 1 + 187378091 C
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64502590 1 - 101219884 C
i chlSab2.chr22                C 0 I 1
s rhiRox1.KN296641v1             1388495 1 -   1467263 C
i rhiRox1.KN296641v1           N 0 I 140
s mm10.chr6                     45784170 1 - 149736546 T
i mm10.chr6                    C 0 I 1
s canFam3.chr20                 16610468 1 +  58134056 C
i canFam3.chr20                I 1 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46064359 0 -  98464013 C

a score=410788.000000
s hg38.chr14_KI270725v1_random     14550 135 +    172810 TACTATTCCAGATGAAGAGATAATTTTATGAAACATAAAAGGATATGT--CTATTGCTT-GGAAAGGATTGTAGTTTTTCTTAGCATTCATGTCTAAGTGAAAT-TTCTTACACAGA--TGTACACAG-AAAAGCAA---TATTA
s panTro4.chr3                 201686733 135 - 202329955 TACTATCCCAGATGAAGAGATAATTTTATGAAACATAAAAGGATATGT--CTATTGCTT-GGAAAGGATTGTAGTTTTTCTTAGCATTCATGTCTAAGTGAAAT-TTCTTACACAGA--TGTACACAG-AAAAGCAA---TATTA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666241 139 + 202140232 TACTATCCCAGATAAAGAGATAATTTTATGAAACATAAAAGGATATGT--CTATTGCTT-GGAAAGGATTGTAGTTTTTCTTAGCATTCATGTCTAAGTGAAAT-TTC-TACACAGAGTTGTACACAG-ATAAGCAATACTATTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67593816 138 +  86207423 TACTATCCCAGATAA--AGATAATTTTACGAAACATAAAAGGATATGT--CTATTGCTT-GGAAAGGATTGTAGTTTTTCTTAGCATTCATGTCTAAGTGAAAT-TTCTTACACAGAGTTGTACACAG-ATAAGCAATATTATTG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61850897 137 + 192599291 TACTATCCCAGATAAAGAGATAATTTTATGAAACATAAAAGGATATGT--CTGTTGCTT-GGAAAGGACTGTAGTTTTTCTTAGCGTTCATGTGTAAGTGAAAT-TTCTTACACAGAGTTGTACACAG-ATAAGCAA---TATTG
i rheMac3.chr2                 I 1 I 3
s macFas5.chr2                  61006890 137 - 192460366 TACTATCCCAGATAAAGAGATAATTTTATGAAACATAAAAGGATATGT--CTGTTGCTT-GGAAAGGACTGTAGTTTTTCTTAGCGTTCATGTGTAAGTGAAAT-TTCTTACACAGAGTTGTACACAG-ATAAGCAA---TATTA
i macFas5.chr2                 I 1 I 3
s papAnu2.chr2                  59566777 137 + 187378091 TACTATCCCAGATAGAGAGATAATTTTATGAAACATAAAAGGATATGT--CTATTGCTT-GGAAAGGACTGTAGTTTTTCTTAGCGTTCATGTGTAAGTGAAAT-TTCTTACACAGAGTTGTACACAG-ATAAGCAA---TATTA
i papAnu2.chr2                 I 1 I 3
s chlSab2.chr22                 64502592 136 - 101219884 -ACTATCCCAGATAAAGAGATAATTTTATGAAACATAAAAGGATATGT--CTATTGCTT-GGAAAGGACTGTAGTTTTTCTTAGCGTTCACGTGTAAGTGAAAT-TTCTTACACAGAGTTGTACACAG-ATAAGCAA---TATTA
i chlSab2.chr22                I 1 I 3
s calJac3.chr15                 46064359 119 -  98464013 -------------------ATAATTTTATAAAACATCAAATGATATGT--CTGTTTTTTGGGGAAGTATTGTagtttttcttagcactcatgtctaagtgaaat-ttcttacacagagttgtacacaA-ATAAGCAA---TATTA
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45784172 129 - 149736546 AAGTAGCTC--------AGAAACTTCCATGAATCATTAATTGATATTTACCTGCTTCTT-GTGAAGA--TGATGATCCTTTTATCA-TCTTTTGTAATTGGAATATTTTTATCCAGAGTTGTTCATGGTAAAAACAT---TCTT-
i mm10.chr6                    I 1 C 0
s canFam3.chr20                 16610469 103 +  58134056 TAGCAGCTCAG----------------------CAC-----------C--CTGTTTCTT-AGGGTGGAGGGCAGTTGTT-TTAGTATTCATGTCTGAGGGAAAT-TTCTTACATTGAGTTTTACACAG-ATAAGCAA---TATTC
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1388496 140 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=10670.000000
s hg38.chr14_KI270725v1_random     14685 2 +    172810 TT
s panTro4.chr3                 201686868 2 - 202329955 TT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666380 2 + 202140232 TT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67593954 2 +  86207423 TT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61851037 2 + 192599291 TT
i rheMac3.chr2                 I 3 C 0
s macFas5.chr2                  61007030 2 - 192460366 TT
i macFas5.chr2                 I 3 C 0
s papAnu2.chr2                  59566917 2 + 187378091 TT
i papAnu2.chr2                 I 3 C 0
s chlSab2.chr22                 64502731 2 - 101219884 TT
i chlSab2.chr22                I 3 C 0
s rhiRox1.KN296641v1             1388636 2 -   1467263 TT
i rhiRox1.KN296641v1           I 140 I 305
s calJac3.chr15                 46064478 2 -  98464013 TT
i calJac3.chr15                C 0 I 3
s mm10.chr6                     45784301 2 - 149736546 CT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16610572 2 +  58134056 TT
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=419315.000000
s hg38.chr14_KI270725v1_random     14687 119 +    172810 ---TTCTCCAATAAGAACACAGACTAGTGACTCT---------------------------------TGATTGATCATCCACAGTGCATTACACTAAGCCA----TTTTACAAATGGGCTCTCAAATTTTGACATTA--GGGAAGTAAGTCAA---------------------------------------------------------------------------------TTTGAGCC
s panTro4.chr3                 201686870 123 - 202329955 ---TTCTCCAATAAGAACACAGACTAGTGACTCT---------------------------------TGATTGATCATCCACAGTGCATTACACTAAGCCAGCCATTTTACAAATGGGCTCTCAAATTTTGACACTA--GGGAAGTAAGTCAA---------------------------------------------------------------------------------TTTGAGCC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666382 119 + 202140232 ---TTCTCCAATAAGAACATAGACTAGTGACTCT---------------------------------TGATTGATCATCCACAGTGCATTACACTAAGCCA----TTTTACAAACGGGCTCTCAAATTTTGATATTA--GGGAAGTAAGTCAA---------------------------------------------------------------------------------TTTGAGCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67593956 119 +  86207423 ---TTCTCCAGTAAGAACACGTACTAGTGACTCT---------------------------------TGATTGATCATCCACAGCGCATTACACTAAGCCA----TTTTACAGATGAGCTCTCAAATTTTGACATTA--GGGAAGTAAGTCAA---------------------------------------------------------------------------------TTTGAGCC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61851039 152 + 192599291 ---TTCTCCAATAAGAACATAGACTAATGACTCTTGATTGATCATCCACAGTGCATTACACTTTTTATGATTGATCATCCACAGTGCATTACACTAAGCCA----TTTTACAAATGGGCTCTCAAATTTTGACATTA--GCGAAGTAAGTCAA---------------------------------------------------------------------------------TTTGAACC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61007032 119 - 192460366 ---TTCTCCAATAAGAACATAGACTAATGACTCT---------------------------------TGATTGATCATCCACAGTGCATTACACTAAGCCA----TTTTACAAATGGGCTCTCAAATTTTGACATTA--GCGAAGTAAGTCAA---------------------------------------------------------------------------------TTTGAACC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59566919 119 + 187378091 ---TTCTCCAGTAAGAGCATAGACTAATGACTCT---------------------------------TGATTGATCATCTACAGTGCATTACACTaagcca----ttttacaaatgggCTCTCAAATTTTGATATTA--GCGAAGTAAGTCAA---------------------------------------------------------------------------------TTTGAACC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64502733 119 - 101219884 ---TTATCCAATAAGAACATAGACTAGTGACTCT---------------------------------TGATTGATCATCCACAGTGCATTACACTAAGCCA----TTTTACAAATGGGCTCTCAAATTTTGACATTA--GGGAAGTAAGTCAG---------------------------------------------------------------------------------TTTGAACC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46064483 119 -  98464013 ---TTATTTGATAAGAACATAGACTACTGACTCT---------------------------------TGATTGATCATCCACAGTGCATTACACTAAGTCA----TTTTACAAATGGGCTCTCAAATGTTAATGTTA--GGGAAGTAAGTCAG---------------------------------------------------------------------------------TTTGAGCC
i calJac3.chr15                I 3 C 0
s mm10.chr6                     45784303 119 - 149736546 ---TTAACCTATAAGATCACAGACCAATAACTCT---------------------------------TAATTGATCACTTAGAGTATACTACACGGAGCCA----CTTTACTG-TAAGCCCT-GAATTTTGACCTTCATGGGACGTGTGTAAA---------------------------------------------------------------------------------TATCCACT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16610574 203 +  58134056 TTTTCCTCCCAGAAGACCATAGACCAGCAGCTCT---------------------------------TAAATGATCATCAACAGTACATTACACTAAGTCA----TTTTACAAATGGGCTCCCAAATTTTGACCTTA--GATAAGGTAGCCAATGTTCAGGTAGAAATATCAGCACAGgggatccctgggtggctcagcggtttagcgtctgcctttggcccagggcatgatcctttgagtc
i canFam3.chr20                C 0 I 127
e rhiRox1.KN296641v1             1388638 305 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=627032.000000
s hg38.chr14_KI270725v1_random     14806 178 +    172810 AAGAATTTCAATAAAGCTATGCATGA---ACATGAATCTTGATA-TAGGTTAAG------------ATTCTGGATCTAGAGCAGCC-TTTGACCTCCATCTGCCTAGAACAGACATAATTTTCTTTTCATTCATTTTTGG-----TGAAAAATATAGGCTGGTGTGATTATTTCTGTGATGTAATTCAATAACTAAAATG
s panTro4.chr3                 201686993 178 - 202329955 AAGAGTTTCAATAAAGCTATGCACGA---ACATGAATCTTGATA-TAGGTTAAG------------ATTCTGGATCTAGAGCAGCC-TTTGACCTCCATCTGCCTAGAACAGACATAATTTTCTTTTCATTCATTTTTGG-----TGAAAAATATAGGCTGGTGTGATTATTTCTGTGATGTAATTCAATAACTAAAATG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666501 178 + 202140232 AAGAGTTTCAATAAAGCTATGCACAA---ACATGAATCTTGATA-TAGATCAAG------------AATCTGGATATAGAGCAGCC-TTTGACCTCCATCTGCCTAGAACAGACATAATTTTCTTTTCATTCATTTTTGG-----TGAAAAATATAGGCTGGTGTGATTATTTCTGTGATGTAATTCAATAACTAAAATG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67594075 178 +  86207423 AAGAGTTTCAATAAAGTTATGCACGA---ACATGAATCTTGATA-TAGATTAAG------------ATTCTGGATCTAGAGCAGCC-TTTGACCCCCATCTGCCTAGAACAGACATAATTTTCTTTTCATTCATTTTTGG-----TGAAAAATATAGGCTGGTGTGATTATTTCTGTGACGTAATTCAATAACTAAAAGG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61851191 185 + 192599291 AAGAATTTTAATGAAGTTATGCACAA---ACATGAATCTTGATA-TAGATTAAGTCT-----TAATATTCTGGATCTAGAGAAGCC-TTTGACCTCCATCTGCCTAGAACAGACATAATTTTCTTTTCATTCATTTTTGG-----TGAAAAATATAGGCTGGTGTGATTACTTCTGGGATGTAATTCAATAACTAAAATA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61007151 185 - 192460366 AAGAATTTTAATGAAGTTATGCACAA---ACATGAATCTTGATA-TAGATTAAGTCT-----TAATATTCTGGATCTAGAGAAGCC-TTTGACCTCCATCTGCCTAGAACAGACATAATTTTCTTTTCATTCATTTTTGG-----TGAAAAATATAGGCTGGTGTGATTACTTCTGGGATGTAATTCAATAACTAAAATA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59567038 185 + 187378091 AAGAATTTTAATGAAGTTATGCACAA---ACATGAATCTTGATA-TAGATTAAGTCT-----TAATATTCCGGATCTAGAGAAGCC-TTTGACCTCCATCTGCCTAGAACagacataattttcttttcattcatttttga-----tgAAAAATATAGGCTGGTGTGATTATTTCTGGGAGGCAATTCAATAACTAAAATA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64502852 185 - 101219884 AAGAATTTCAATGAAGTTATGCACAA---ACATGAATCTTGATA-TACATTAAGTCT-----TAATATTCTGGATCTAGAGAAGCC-TTTGACCTCCATCTGCCTAGAACAGACATAATTTTCTTTTCATTCATTTTTGG-----TGAAAAATATAAGCTGGTGTGATTATTTCTGGGATGTAATTCAATAACTAAAATA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46064602 190 -  98464013 AGGAGTTTCAATGCAGTTATGCACAA---ACATGAATCTTGATA-CAGATTAAATCTGAATATAACATTCTGGATCTAGAGCAGCC-TTTGACCTCCGTTTGCCTAGAACAGACATCATTTTTTTTTCATTCATTTTTGG-----TGAAAAATATAGGATGGTGTGATTATTTCTACGATGCAATCCAATTATGAAAATT
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45784422 157 - 149736546 GTGTGATGCTGCAAATCTGAGCACAG----------------------------------------TGCTTGGCTCTAGAGTGGCCATTTCACCTCCATCTGCCGGGAGCAGGTGTCATTTTCTCTTCATAAATGTTTAGATATTTAAAAAAAACTCAC---TGTGATTATTTCTGTTGTGTGATCTAAGTATTAAAATG
i mm10.chr6                    C 0 I 1
s canFam3.chr20                 16610904 194 +  58134056 AGAAATATCAACACAGATATGTGCAAACAACATGTATCTTGCTATTAGGGTAAATATGAATATAGCATTCTAGGTTTAGAGCAGTC-CTCTATCTCCATCTGCCTAGAGCACTCATAATTTTCTTTTCATTCGATTTTGG-----TGGAAAATCCAGCCTGGCGTGATTGTTTCTGTGATGCAATCCAATTACTAAAATT
i canFam3.chr20                I 127 C 0
e rhiRox1.KN296641v1             1388638 305 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=4664.000000
s hg38.chr14_KI270725v1_random     14984 1 +    172810 T
s panTro4.chr3                 201687171 1 - 202329955 T
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666679 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67594253 1 +  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61851376 1 + 192599291 T
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  61007336 1 - 192460366 T
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59567223 1 + 187378091 T
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64503037 1 - 101219884 T
i chlSab2.chr22                C 0 I 1
s rhiRox1.KN296641v1             1388943 1 -   1467263 C
i rhiRox1.KN296641v1           I 305 I 757
s calJac3.chr15                 46064792 1 -  98464013 T
i calJac3.chr15                C 0 I 1
s mm10.chr6                     45784580 1 - 149736546 T
i mm10.chr6                    I 1 C 0
s canFam3.chr20                 16611098 1 +  58134056 T
i canFam3.chr20                C 0 I 1
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=141815.000000
s hg38.chr14_KI270725v1_random     14985 33 +    172810 ACACTCTTGTCTCAAAGTCCTCAACATCACCTT
s panTro4.chr3                 201687172 33 - 202329955 ACACTCTTGTCTCAAAGTCCTCAACATCACCTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666680 33 + 202140232 ACACTCTTGTCTCAAAGTCTTCAATATCACCTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67594254 33 +  86207423 ACACTCTGGTCTCAAAGTCCTTAACATCACCTT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61851378 33 + 192599291 ACACTCTTGTCTCAAAGTCCTCAACATCACCTT
i rheMac3.chr2                 I 1 C 0
s macFas5.chr2                  61007338 33 - 192460366 ACACTCTTGTCTCAAAGTCCTCAACATCACCTT
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59567225 33 + 187378091 ACACTCTTGTCTCAAAGTCCTCAACATCACCTT
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64503039 33 - 101219884 ACACTCTTGTCTCAAAGTCCTCAACATCACCTT
i chlSab2.chr22                I 1 C 0
s calJac3.chr15                 46064794 33 -  98464013 ACTCTCTTGTCTCAAAGTCCTCAACATCACCTT
i calJac3.chr15                I 1 C 0
s mm10.chr6                     45784581 33 - 149736546 ATATCCTTGTCTCAGAATTCCAAACATCTCATT
i mm10.chr6                    C 0 I 373
s canFam3.chr20                 16611100 33 +  58134056 ACACTTTTGTCTCAAAGTCCCCAATAccactct
i canFam3.chr20                I 1 C 0
e rhiRox1.KN296641v1             1388944 757 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=2486427.000000
s hg38.chr14_KI270725v1_random     15018 726 +    172810 GTCCTAAACTCCTGG-TCCAAGACCAATCTACCCTCCATCCTCTTGTTGCCTGGATCCCTTTTCTTTGTGGGTATGACCATTGGAGCACTGAAAAGATGATATAAGTGTCAGGTGAGTTCCATGTTATACATTTGATT---------------------------------TATGAGGGAATGCAGGCTGCTTTGGGAATTTCCTCTGGCACCTTAGCCCTTTTTCTCCTTTCCTTTTCTCCATATTCCAGGACCATCTGTAAAAGGCAGGGATGAGAGAGAGTTCAATGCCTTTCTCCTCCTCTTGATAAGA--AGGGGTAGGATTATGGATAACTACAACTTTGAGAATTCTCCCTCTTACCTTCTGTAGTCCTCTAGATGTGGTCCAGGGGATTGGGGTTTTCAGAAGTTGTGTTTTTGCTGTGCCCTGTCCTAGAAGGCCCTGCAGAAGCTGACT------AAAATGGGTAATTTTCTGAACTTAGAAAT-TGGAGCACTTAGTTTACTCTGCTTGTCAGCATTCTCACGGAAGCAAGAAACAGTCCTCAAAGGCACTTTATAACTGATACCATATAAAAA-CAATTTTTGCTACATTTGACATGACATACTCTTACAGTGATGTCTCTGGCAGAACAATGCACACTCAGTGAGTTGAGGAACAAGTTGCTGCAAAGAAGTGATAAGGCTTCATGTAAAGGCATGCTAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTGTAAGAAATTTGCATTATGAC-TGT
s panTro4.chr3                 201687205 726 - 202329955 GTCCTAAACTCCGGG-TCCAAGACCAATCTACCCTCCATCCTCTTGTTGCCTGGATCCCTTTTCTTTGTGGGTATGACCATTGGAGCACTGAAAAGATGATATAAGTGTCAGGTGAGTTCCATGTTATACATTTGATT---------------------------------TATGAGGGAATGCAGGCTGCTTTGGGAATTTCCTCTGGCACCTTAGCCATTTTTCTCCTTTCCTTTTGTCCATATTCCAGGACCATCTGTAAAAGGCAGGGATGAGAGAGAGTTCAATGCCTTTCTCCTCCTCTTGATAAGA--AGGGGTAGGATTATGGATAACTACAACTTTGAGAATTCTCCCTCTTCCCTTCTGTAGTCCTCTAGATGTGTTCCAGGGGATTGGGGTGTTCAGAAGTGGTGTTTTTGCTGTGCCCTGTCCTAGAAGGCCCTGCAGAAGCTGACT------AAAATGGGTAATTTTCTGAACCTAGAAAT-TGGAGCACTTAGTTTACTCTGCTTGTCAGCATTCTCAGGGAAGCAAGAAACAGTCCTCAAAAGCACTTTATAACTGATACCATATAAAAA-CAATTTTTGCTACATTTGACACGACATACTCTTACAGTGATGTCTCTGGCAGAACAATGCACACTCAGTGAGTTGTGGAACAACTTGCTGCAAAGAAGTGATAAGGCTTCATGTAAAGGCACGCTAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTGTAAGAAATTTGCATTATGAC-TGT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69666713 726 + 202140232 GTCCTATACTCCTAG-TCCAAGACCAATCTACCCTCCATCCTCTTGTTGCCTGGATCCCTTTTCTTTGTGGGTATGACCATTGGAGCACTGAAAAGATGATATAAGTGTCAGGTGAGTTCCATGTTATACATTTGATT---------------------------------TATGAGGGAATGCACGCTGCTTTGGGAATTTCCTCTGGCACCTTAGCCCTTTTTCTCCTTTCCTTTTCTCCATATTCCAGGACCATCTGTAAAAGGCAGGGATGAGAGAGAGTTCAATGCCTTTCTCCTCCTCTTGATAAGA--AGGGGTAGGATTATGGATAACTACAACTTTGAGAATTCTCTCTCTTACCTTCTGTAGTCCTCTAGATGTGGTCCAGGGGATTGGGGTTTTCAGAAGTGGTGTTTTTGCTGTGTCCTTTCCTAGAAGGCCCTGCAGAAGCTGACT------AAAATGGGTAATTTTCTGAACCTAGAAAT-TGGAGCACTTAGTTTACTCTGCTTGTCAGCATTCTCAGGGAAGCAAAAAACAGTCCTCAAAAGCACTTTATAAGTGATAGCATATAAAAA-CAATTTTTGCTACATTTGACACGACATACTCCTACAGTGATGTCTCTGGCAGAACACTGCACACTCAGTGAGTTGAGGAACAAGTTGCTGCAAAGAAGTGATAAGGCTTCATGTAAAGGCATGCTAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTGTAAGAAATTTGCATTATGAC-TGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67594287 726 +  86207423 GTCCTATACTCCTGG-TCCAAGACCAATCTACCCTCCAACCTCTTGTTGCCTGGGTCCCTTTTCTTTGTGGGTATGACCATTGGAGCACTGAAAAGATGATATAAGTGTCAGGTGAGCCCCATGTTATACATTTGATT---------------------------------TATGAGGGAATGCAGGCTGCTTTGGGAATTTCCTCTGGCACCTTAGCCTTTTTTCTCCTTTCCTTTTCTCCATATTCCAGGACCATCTGTAAAAGGCAGGGATGAGAGAGAGTTCAATGCCTTTCTCCTCCTCTTAATAAGA--AGGGGTAGGATTATGGATAACTACGACTTTGAGAATTCTCCCTCTTACATTCTATAGTCCTCTAGATGTGGTCCAGGGGATTGGAGTTTTCAGAAGTGGTGTTTTTGCTGTGCCCTTTCCTAGAAGGCCCTGCAGAAGCTGACT------AAAATGGGTAATTTTCTGAACCTAGAAAT-TGGAGCACTTAGTTTACTCTGCTTGTCAGCATTCTCAGAGAAGCAAGAAACAGTCCTCAAAAGCACTTTATAACTGATACTACATAAAAA-CAATTTTTGCTACATTTGACATGACATACTCTTACAGTGATGTCTCTGGCAGAACACTGCACACTCAGTGAGTTGAGGAACAAGTTGCTGCAAAGAAATGATAAGGCTTCATGTAAAGGCATGCTAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTGTAAGAAACTTGCATTATGAC-TGT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61851411 725 + 192599291 GTCCTATGCTCCTGG-TCCAAGACCAATCTACCCTCTATCCTCTTGTTACCTGGGTCCCTTTTCTTTGTGAGTATGACTGTTGGACCACTGACAAGATGATATACGCGTCAGGTGAATTCCATGTTATACATTTGATT---------------------------------TATGAGGGAATGCAGGCTGCTTTGGGAATTTCCTCTGGCACCTTAGCCCTTTTTCTCCTTTCCTTTTCTCCATACTCCAGGACCATCTGTAAAAGGCAGGGATGAGAGAGAGTTCAATGCCTTTCTCCTCCTCTTGATAAGA--AGGGGTAGGATTATGGATAACTACAACTTTGAGAATTCTCCCTCTTACCTTCTGTAGTCCTCTAGATGTGGTCCAGGGGATTGAGGTTTTCAGAAGTGGTGTTTTTGCTGTGCCCTCTCCTAGAAGGCCCTGAAGAAACTGACT------AAAATGGGTAATTTTCTGAACCTAGAAAC-TGGAACACTTAGTTTACTCTGCTTGTCAGCATTCTCAGGGAAGCAAGAAACAGTCCGCAAAAACACTTTATAACTGATAACATATAAAAA-CAATTTTTGCTACCTTTGACACTACATACTCTTACAGTGATGTCTCTGGCAGAACATTGTA-ACTCGGTGGGTTGAGGAATAAGTTTCTGCAATGAAGTGATAAGGTTTCATGTAAAGTCATGCCAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTGTAAGAAATTTGCATTATGGC-TGT
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  61007371 725 - 192460366 GTCCTATGCTCCTGG-TCCAAGACCAATCTACCCTCTATCCTCTTGTTACCTGGGTCCCTTTTCTTTGTGAGTATGACTGTTGGACCACTGACAAGATGATATACGCGTCAGGTGAATTCCATGTTATACATTTGATT---------------------------------TATGAGGGAATGCAGGCTGCTTTGGGAATTTCCTCTGGCACCTTAGCCCTTTTTCTCCTTTCCTTTTCTCCATACTCCAGGACCATCTGTAAAAGGCAGGGATGAGAGAGAGTTCAATGCCTTTCTCCTCCTCTTGATAAGA--AGGGGTAGGATTATGGATAACTACAACTTTGAGAATTCTCCCTCTTACCTTCTGTAGTCCTCTAGATGTGGTCCAGGGGATTGAGGTTTTCAGAAGTGGTGTTTTTGCTGTGCCCTCTCCTAGAAGGCCCTGAAGAAACTGACT------AAAATGGGTAATTTTCTGAACCTAGAAAC-TGGAACACTTAGTTTACTCTGCTTGTCAGCATTCTCAGGGAAGCAAGAAACAGTCCGCAAAAACACTTTATAACTGATAACATATAAAAA-CAATTTTTGCTACCTTTGACACTACATACTCTTACAGTGACGTCTCTGGCAGAACATTGTA-ACTCGGTGGGTTGAGGAATAAGTTTCTGCAATGAAGTGATAAGGTTTCATGTAAAGTCATGCCAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTGTAAGAAATTTGCATTATGGC-TGT
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59567258 726 + 187378091 GTCCTATGCTCCTTG-TCCAAGACCAATCTACCCTCTATCCTCTTGTTACCTGGGTCCCTTTTCTTTGTGAGTATGACTGTTGGACCACTGACAAGATGATATAAGCGTCAGGTGAATTCCATGTTATACATTTGATT---------------------------------TATGAGGGAATGCAGGCTGCTTTGGGAATTTCCTCTGGCACCTTagccctttttctcctttccttttctccatactCCAGGACCATCTGTAAAAGGCAGGGATGAGAGAGAGTTCaatgccttcctcctcctcttgatAAGA--AGGGGTAGGATTATGGATAACTACAACTTTGAGAATTCTCCCTCTTACCTTCTGTAGTCCTCTAGATGTGGTCCAGGGGATTGAGGTTTTCAGAAGTGGTGTTTTTGCTGTGCCCTCTCCTATAAGGCCCTGCAGAAGCTGACT------AAAATGGGTAATTTTCTGAACCTAGAAAC-TGGAACACTTAGTTTACTCTGCTTGTCAGCATTCTCAGGGAAGCAAGAAACAGTCCGCAAAAACACTTTGTAACTGATaacatataaaaa-caatttttgctACCTTTGACACTACATACTCTTACAGTGATGTCTCTGGCAGAACATTGTACACTTGGTGGGTTGAGGAATAAGTTTCTGCAATGAAGTGATAAGGTTTCATGTAAAGACATGCCAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTGTAAGAAATTTGCGTTATGgc-tgt
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64503072 725 - 101219884 GTCCTATGCTCCTGG-TCCAAGACCAATCTACCCTCTATCCTCTTGTTACCTGGGTCCCTTTTCTTTGTGAGTATGACTGTTGGACCACTGACAAGATGATATAAACATCAGGTGAATTCCATGTTATACATTTGATT---------------------------------TATGAGGGAATGCAGGCTG-TTTGGGAATTTCCTCTAGCACCTTAGCCCTTTTTCTCCTTTCCTTTTCTCCATACTCCAGGACCATCTGTAAAAGGCAGGGATGAGAGAGAGTTCAATGCCTTTCTCCTCCTCTTGATAAGA--AGGGGTAGGATTATGGATAACTACAACTTTGAGAATTCTCCCTCTTACCTTCTGTAGTCCTCTAGATGTGGTCCAGGGGATTGAGGTTTTCAGAAGTGGTGTTTTTGCTGTGCCCTCTCCTAGAAGGCCCTGCAGAAGCTGACT------AAAATGGGTAATTTTCTGAAGCTAGAAAC-TGGAGCACTTAGTTTACTCTGCTTGTCAGTATTCATAGGGAAGCAAGAAACAGTCTGCAAAAACACTTTATAAATGATAACATATAAAAA-CAATTTTTGCTACCTTTGACACTACATACTCTTACAGTGATGTCTCTGGCAGAACAATGTACACTCAGTGGGTTGAGGAGTAAGTTTCTGCAATGAAGTGATAAGGCTTCATGTAAAGGCATGCCAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTGTAAGAAATTTGCATTATGGC-TGT
i chlSab2.chr22                C 0 I 1
s calJac3.chr15                 46064827 723 -  98464013 GTCCTATAGTCCTGG-TTTCAGAACAATCTACCCTCCACCCTCTTGTCACCTGGGTCCCTTTTCTTTGTGGGTATGACCGTTGGAGCACTGACAAGATGAT---TGTGTCAGGTGAGTTCCATGTTATACATTGGATT---------------------------------TGTGAGGGAATACAGGCTGCTTTGGTAATTTCCTCTGGCACCTTAGCTGTTTTTTTCTTTTCCTTTTCTCCGTACTCCAGGACCATCTGTAAAAGGCAAGGATGAGAGAGAATTCAATGCCTTTCTCCTCCTCTTGACATGA--AGGGGTGGAATTATGGAGAACTACAATTTTAAGAATTCTCCCTCTTACCTTCTGTTGTCCTCTAGATGTGGTCCAGGGGATTGGGGTTTTCAGAAATGGTGTTTTTGCTGTGCCCTTTTCTAGCAGGTCCTAAAGAAGCTGAAT------ACAATGGGTAATTTTCTGAACCTAGAAAT-TGGAGCACTTAGTTTACTCTGCTTGTCAGCATTCTCAGGGAGGCAAGAAACGGTCCTCAAAAGCACTTTATACCTGATACCATATAAAAC-CAATTTTTGCTACATTTGACATGACATACTCTTACAGTGATGTCTCTGGCAGAACATTGCATACTCCGTGGGTTGGGGAACAAGTTGCTGCAAAGAAGTGATAAGGCTTCTTGTAAAAGCATGCTAGTGTTAAAGAAAGATGCCCTATATGCCAGAAATTATAAGAAATTTGCATTATGAC-TAT
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16611133 735 +  58134056 gtcccaaactcctggcccccaaagcgatctaccttccatactcttgttgctaggctcccctttatcagagtccttgac-----gagtactaagaagatggt-taagtcccagctaacttctgtagaataaggttcactcttgagaaaactctagtgtctttgccatggcaacctgagggaacacaggctgctTTGGG-ATTTCCTCTGACACTTTAGCC---TCTTTCTTACACCTTTTTTCATGTTCTGTAGCCATATGTGAAAGGGAGGGGTAGGAGACAGTTCGAATCCTTTTCTGTCCCCTTAGCATGGACAGAGGTAAGATTATG-----------------GAATTCTCGGCCTTTCCTCT-----ACCTCTAAATG----CCCAGAGACTTGGGCTTCCAGAAGTGATACTTTTTCAGTACCTTTTCCTAGCAAGCTCTGCAGTCGCTGACTGGCACAACAGTGGGCATTTTTCTGAACCTGGAAGTGTGGAACACTTAGTTTACTCTGCTTTTCAGTATTGTCAGGAAAGCAAGAAACAGTTTTCAAAAGTGCTTTCTACCTGACACCATATGAAAACCAATTTTTGCTACGTTTGAGACAACACACTCTTACAGTGTGCTCTCTGGTAGAGCATTGCTCATTCAGCCGGGCTGGGAGTAAGTTGCTGCAAGGAAGCGATAAGGCTTAATATAAAGGCACACTAGTGTTAAAGAAAGATATCTTGTATGCTAGACACTGTAAGAAATTTGCATCACGACTTGT
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1388944 757 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=-3379.000000
s hg38.chr14_KI270725v1_random     15744 1 +    172810 -A
s panTro4.chr3                 201687931 1 - 202329955 -A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69667439 1 + 202140232 -A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595013 1 +  86207423 -A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61852137 1 + 192599291 -G
i rheMac3.chr2                 I 1 C 0
s macFas5.chr2                  61008097 1 - 192460366 -G
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59567985 1 + 187378091 -g
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64503798 1 - 101219884 -A
i chlSab2.chr22                I 1 C 0
s rhiRox1.KN296641v1             1389701 1 -   1467263 -G
i rhiRox1.KN296641v1           I 757 I 35
s calJac3.chr15                 46065550 1 -  98464013 -A
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16611868 1 +  58134056 T-
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=122739.000000
s hg38.chr14_KI270725v1_random     15745 34 +    172810 TCAGAGAATATGGTCAGGACAGTAAAGAGTTTTT
s panTro4.chr3                 201687932 34 - 202329955 TCAGAGAATACGGTCAGGACAGTAAAGAGTTTTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69667440 34 + 202140232 TCAGAGAATATGGTCAGGACTGTAAGGAGTTTTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595014 34 +  86207423 TCAGAGAATATGGTCAGGACAGTAAAGAGTTTTT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61852138 34 + 192599291 TCAGAGAATATAGTCAGGACAGTAAAGAGTTTTT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61008098 34 - 192460366 TCAGAGAATATAGTCAGGACAGTAAAGAGTTTTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59567986 34 + 187378091 tcagagaatataGTCAGGACAGTAAAGAGTTTTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64503799 34 - 101219884 TCAGAGAATATGCTTAGGACAGTAAAGAGTTTTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46065551 34 -  98464013 TCAGAGAATATGATAAGTATAGTAAAGAGTTTTT
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16611869 34 +  58134056 CAAGAAAATATGGTCAGGACAGTAAAGAGTTCTT
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1389702 35 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5005.000000
s hg38.chr14_KI270725v1_random     15779 1 +    172810 T
s panTro4.chr3                 201687966 1 - 202329955 T
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69667474 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595048 1 +  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61852172 1 + 192599291 T
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  61008132 1 - 192460366 T
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59568020 1 + 187378091 T
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64503833 1 - 101219884 T
i chlSab2.chr22                C 0 I 1
s rhiRox1.KN296641v1             1389737 1 -   1467263 T
i rhiRox1.KN296641v1           I 35 I 147
s calJac3.chr15                 46065585 1 -  98464013 T
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16611903 1 +  58134056 T
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=472595.000000
s hg38.chr14_KI270725v1_random     15780 147 +    172810 GGTTCTCCTCAAATTAAAAACAACTAATTCAATAAGTATGGAAATATGTTTTCAATATTCTA-----TAACTTTTTTATACTTTAA---TTCCTTCAAGAGTGTCATTAAATAATCCAG--------TTTTTTTAA---GTATCCTGCAAACACCAA--AGGTTGACA
s panTro4.chr3                 201687967 147 - 202329955 GGTTCTCCTCAAATTAAAAACAACTAATTCAATAAGTATGGAAATATGTTTTCAATATTCTA-----TAACTTTTTTATACTTTAA---TTCCTTCAAGAGTGTCATTAAATAATTCAG--------TTTTTTTAA---GTATCCTGCAAACACCAA--AGGTTGACA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69667475 148 + 202140232 GGTTCTCCTCAAATAAAAAACAACTAATTCAATAAGTATGGAAATATATTTTCAATATTCTA-----CAACTTTTTTATACTTTAA---TTCCATCAAGAATGTCATTAAATAATCCAG-------TTTTTTTTAA---GTATCCTGCAAACACCAA--AGGTTGACA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595049 147 +  86207423 GGTTCTCCTCAAATAACAAACAACTAATTCAATAAGTATGGAAATATGTTTCCGATATTCTA-----TAACTTTTTTATATTTTAA---TTCCATCAACAGTGTCATTAAATAATCCAG--------TTTTTTTAA---GTATCCTGCAAACACCAA--AGGTTGACA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61852174 147 + 192599291 GATTCTCCTCAAATAACAAACAACTAATTCAATAAGTATGGAAATATGTTTTCAATATTCTA-----TAACTTTTTTATACTTTAA---TTCCATCAAGAGTGTCATTAAATAATCCAG--------TTTTTTTAA---GTATCCTTCAAACACCAA--AGGCTGACA
i rheMac3.chr2                 I 1 C 0
s macFas5.chr2                  61008134 147 - 192460366 GATTCTCCTCAAATAACAAACAACTAATTCAATAAGTATGGAAATATGTTTTCAATATTCTA-----TAACTTTTTTATACTTTAA---TTCCATCAAGAGTGTCATTAAATAATCCAG--------TTTTTTTAA---GTATCCTTCAAACACCAA--AGGCTGACA
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59568022 147 + 187378091 GATTCTCCTCAAATAACAAACAACTAATTCAATAAGTATGgaaatatgttttcaatattctg-----taacttttttatactttaa---ttcCATCAAGAGTATCATTAAATAATCCAG--------tttttttAA---GTATCCTGTAAACACCAA--AGACTGACA
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64503835 155 - 101219884 GGTTCTCCTCAAATAACAAACAACTAATTCAATAAGTATGGAAATATGTTTTCAATATTCTA-----TAACTTTTTTATACTTCAA---TTCCATCAAGAGTGTCATTAAATAATCCAGTTTTTTTTTTTTTTTAA---GTATCCTGCAAACACCAA--AGGTTGACA
i chlSab2.chr22                I 1 C 0
s calJac3.chr15                 46065586 149 -  98464013 AGTTCTTCTCAAATCACAGACAACTAATTCAATAAGGGTGGGAATGTGTACTCAATAGTCTA-----TAACTTTTTTATGCTTTAA---TTTCAACAGGAGTGCCATTAAATAATCCAA--------TTTTTTTAA---GTATCTTGCAAACACAAAAGAGGTTGACA
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16611904 157 +  58134056 AGCTCTTCAAAAATCACAAACAAATTTTTCAATAATTGCCAAAGTAGTTTTTAAATATTCAGAAACTTAATTTATTTTTACTTTAGTTCTTCCTTCAAGAGTGCCATCAAATTATCCAG--------TTTTTTTAAACTGTATTGATTATACA-AGA--AGGTTGACA
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1389738 147 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5005.000000
s hg38.chr14_KI270725v1_random     15927 1 +    172810 A
s panTro4.chr3                 201688114 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69667623 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595196 1 +  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61852321 1 + 192599291 A
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61008281 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59568169 1 + 187378091 A
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64503990 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s rhiRox1.KN296641v1             1389885 1 -   1467263 A
i rhiRox1.KN296641v1           I 147 I 1134
s calJac3.chr15                 46065735 1 -  98464013 A
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16612061 1 +  58134056 A
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1684168.000000
s hg38.chr14_KI270725v1_random     15928 571 +    172810 TCAAAGTTTTAAGT---------------------CAACATGTGAAGTTGCCATTGCTACTTATCAGGGCAATAAAGTCAATGACTGATATATTTTTTCAG--TTTTTTAAATTTATTTTTTAATTAAATTT-----------------TAGTGtttattttagatatgggggg---ataca----tgtgcaggtttgttacat--aggtatattgc----ataatcctgagtttggg------------------------------------------ggtatggatcctgtcatccag--------------ggagtta--------gcataggatccaataggtagtttttcaacccttccccacctctctctcccctctcttagtccccggtgtctattgcttccatctacatgtccatgtaaactcaatgtccagctcttattcattagtgagaacatgtggtatttgattttctgtttctgcattaattcac-----ttaggattatggacttcagcttaatccatgttgcttaaaaggacataatttgattctttattatgactgcatagtgttccttggtacctgtatgtaccacattttctttatccaatccaccactaatggatacctaggttgagttcatgtctttgttattgtgaatagcacagcaaagaaaatataagt
s panTro4.chr3                 201688115 573 - 202329955 TCAAAGTTTTAAGT---------------------CAACATGTGAAGTTGCCATTGCTACGTATCAGGGCAATAAAGTCAATGACTGATATATTTTTTCAGttttttttaaatttatttttaaattaaattt-----------------taGTGtttattttagatatgggggg---ataca----ggtgcaggtttgttacat--aggtatattgc----ataatcctgagtctggg------------------------------------------ggtatggatcctgtcatccag--------------gtagtta--------gcataggatccaataggtagtttttcaacccttccccaccgctctctcccctcttttagtccccggtgtctactgcttccatctacatgtccatgtaaactcaatgtccagctcttattcattagtgagaacatgtggtatttgattttctgtttctgcattaattcac-----ttacgattatggacttcagcttaatccatgttgcttaaaaggacataatttgattctttatgatgactgcatagtgttccttggtacctgtatgtaccacattttctttatccaatccaccactaatggatacctaggttgagttcgtgtctttgttatcgtgaatagcacagcaaagaaaatataagt
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69667624 596 + 202140232 TCAAAGTTTTAAGTTGAAGGTCTGTAGCCATTTCCCAACATGTGAAGTTGCCATTGCTACGTATCAGGGCAATAAAGTCAATGACTGATATATTTTTTCAG-tttttttaaatttatttttaaattaaattt-----------------tagcgtttattttagatatgggggatacataca----tgtgcaggtttgttacat--aggtatactgc----ataatcctgagtttggg------------------------------------------ggtatggatcctgtcatccag--------------gtagtta--------gcacaggatccaaaaggtagtttttcaacccttccccacctctctctcccctcttttagtccccggtgtctattgcttccatctacatgcacatgtaaactcaatgtccagctcttactcattagtgagaacatgtggtatttggttttctgtttctacattaattcac-----ttaggattatggacttcagcttaatccatgttgcttaaaaggacataatttgattctttattatgactgcatagtgttccttggtacctatatgtaccacattttctttatctaatccaccactaatggatacctaggttgagttcatgtctttgttattgtgaatagcacagcaaagaacatatgagt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595197 591 +  86207423 TCAAAGTTTTAAGTTGAAGGTCTGTAGCCATTTCCCAAC--GTGAAGTTGCCATTGCTACACATCAGGGCAATAAAGTCAATGACTGATATATTTTTTCAG-AGTTTTTTAATTTATTTTTAAATTAAAttt-----------------tagcatttattttagatatgggggg---ataaa----tgtgcaggtttgttacgt--aggtatattgc----ataatcctgagtttggg------------------------------------------ggtatggatcctgtcatccag--------------gtagtta--------gcataggatccaataggtagtttttcaacccttccccacctctctctcccctcttttagtccccagtgtctattgcttccatctacatgtccatgtaaactcaatgtccagctcttactcattagtgagaacatgtggtatttggttttctgtttctgcattaattcac-----ttaggattatggccttcagcttaatccatgttgcttaaaaggacagaatttgattctttattacaactgcatagtgttccctggtacctatatgtaccacattttctttatctaatccaccaataatggatacctaggttgagttcatgtctttgttatcgtgaatagcacagcaaagaacatatgagt
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61852322 586 + 192599291 TCAAAGTTTTAAATCGAAGCTCTGTAGCCATTTCATAACATGCGAAGTTGCCATTGCTACATATCAGGGCAATAAAGTCAATGACTGATATATATTTTCAG--ttttttaaatttatttttaaattaaattt-----------------tagcttttattttagatat-ggggg---atgca----tgtgaaggtttgttacat--aggtatattgt----gtaatgctgaatttggg------------------------------------------ggtatggatcctgtcatccag--------------gaagtta--------gcataggaccaaataggtagtttttcaacctttccccacttctctctcctctcttttagtccccggtgtctattgcttccatctacatgtccatgtatactcaatgttcagctcttactcattagtgagaacattttgtatttgattttctgtttctgcattaattcac-----ttaggattatggccttcagcttaatccatgttgcttaaaaggacataatttgattctttattatgact-----atgttccttggtacctatatgtaccacattttctttatccaatccaccactaatggacacctaggttgagttcatgtctttgatatcatgtatagcacaccaaagaacacatgagt
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61008282 586 - 192460366 TCAAAGTTTTAAATCGAAGCTCTGTAGCCATTTCATAACATGCGAAGTTGCCATTGCTACATATTAGGGCAATAAAGTCAATGACTGATATATATTTTCAG--TTTTTAAAATTTATTTTTAAATTAAAttt-----------------tagcttttattttagatat-ggggg---atgca----tgtgaaggtttgttacat--aggtatattgt----gtaatgctgaatttggg------------------------------------------ggtatggatcctgtcatccag--------------gaagtta--------gcataggaccaaataggtagtttttcaacctttccccacttctctctcctctcttttagtccccggtgtctattgcttccatctacatgtccatgtatactcaatgttcagctcttactcattagtgagaacattttgtatttgattttctgtttctgcattaattcac-----ttaggattatggccttcagcttaatccatgttgcttaaaaggacataatttgattctttattatgact-----atgttccttggtacctatatgtaccacattttctttatccaatccaccactaatggacacctaggttgagttcatgtctttgatatcatgtatagcacaccaaagaacacatgagt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59568170 586 + 187378091 TCAAAGTTTTAAATTGAAGCTCTGTAGCCATTTCACAACATGCGAAGTTGCCATTGCTACATATCAGGGCAATAAAGTCAATGACTgatatatattttcag--ttttttaaatttatttttaaattaaattt-----------------tagcttttattttagatat-ggggg---ataca----tgtgaaggtttgttacat--aggtatattgt----gtaatgctgaATTTGGG------------------------------------------GGTATGGATCCTGTCATCCAG--------------GAAGTTA--------GCATAGGAccaaataggtagtttttcaacctttccccacttctctctcctctcttttagCCCCTGGTGTCTATTGCTTCCATCTACATGTCCATGTATACTCAATGTTCAGCTCTTACTCATTAGTGAAAACATTtcgtatttgattttctgtttctgcattatttcac-----ttaggattatggccttcAGCTTAATCCATGTTGCTTAAAAGGACATAATTTGATTCTTTATTATGACT-----ATGTTCCTTGGTAcctatatgtaccacattttctttatccaatccaccactaatggacatctaggttgagttcatgtctttgctatcatgtATAGCACACCAAAGAATATATGAGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64503991 587 - 101219884 TCAAAGTTTTAAATTGAAGGTCTGTAGCCATTTCACAACATGGGAAGTTGCCATTGCTATATATCAGGGCAATAAAGTCAACGACTGATATATATTTTCAG--TTTTTAAAATTTATTTTTTAATTAAAttt-----------------tagcttttattttagatacgggggg---ataca----tgtgaaggttttttacat--aggtatattgt----ataatgctgaatttggg------------------------------------------ggtatggatcctgtcatccag--------------gaagtta--------gcataggaccaaataggtagtttttcaacctttccccacttctctctcctctcttttagtccccggtgtctattgcttctatctacatgtccacgtatactcaatgttcagctcttactcattagtgagaacatttcgtatttgattttctgtttctgcattaattcac-----ttgggattatggccttcagcttaatccatgttgcttaaaaggacataatttgattctttattatgact-----atgttccttggtacctatatgtaccacattttctttatccaatccaccactaatggacacctaggatgagttcatgtctttgctatcatgtatagcacagcaaagaacatatgagt
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46065736 583 -  98464013 TTAAAGTTTTATGTTGAAGG-CTGTAGCCATTTCCCAACAGGTGAAGTTGCCATTAATATGTATCAGGGCAATAAAGTCAATGACTGATATATTTTTTCAG-GTTTTCAAAATTTATTTTTTAAATAAGTTT-----------------TAGCTCTTG----AGATATGGgagg---atacc----tgtgcaggactgttacat--agatacatggc----ataatgctgagttttca------------------------------------------ggtatggatcctgtcatccag--------------atagtta--------gcataggacctcataggtagtttttcaacccttccccgcttctctccccg---tcttagtccccagtgtctgttgtttccatctacatgtccatgtatactcaatgattagctcttactcactaatgaaaac--gtggtatttggttttctgttcctgcattaaatcac-----ttaggattatggcctccaccttaatccatgctgttccaaaggacataatttccttctttattatgactgtgtagtgttccttggtacctatgtgtaccacattttctttactgaatccaccactgatggacacctaggttgatttcatgtctttgttatcatgaataacacagcaaagaacatacgagt
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16612062 634 +  58134056 CCAAGGTTTTAAATTGAGGGTCTGTGATCATTTCCCAACACATATTATGGCCACTGCTACATAT-AGGGCCAGTAAGTCAATGACTGACATCTTTGTATAG--------ACAACTACCTAACAATTCCATTTTGACTGTCCTCACTGTGTAGCTTCTTCTCTGGAT-------G---ATACAGTGCTGTGCCAATTTTTTAAACTGTGttttattgtagcaagaacactgaacatgggctctaacctcttaaatttttaaaaatgtacattactgttgaccataggtactgtgtcatacagtggatttatagagcgtatttatattgcttgaataaaactttgtctgttgattagtaactcctc----attctctctcccccc----agtccttggtaaccaccattctgctctttgattcaatgaatgtgatgatttcagatacctcatacaagtggaatcatgcagtatttggctttctgaaatggc-ttatttcacattcattaacataacatcctccagtctcattcatgttgtcacatattgcagaatt-----------------------gtattccgttgtatgtatatgt--ctaattttctttatgcattgatc------tggaacattttgttgttcccacatcttggctattgtgaatagtgctgcaaagaacatgggaat
i canFam3.chr20                C 0 T 554
e rhiRox1.KN296641v1             1389886 1134 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=26081.000000
s hg38.chr14_KI270725v1_random     16499 9 +    172810 gcgtgtACT
s panTro4.chr3                 201688688 9 - 202329955 gcgtgCACT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668220 9 + 202140232 gcatgtACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595788 9 +  86207423 gcatgtACT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61852908 9 + 192599291 gcatgtACT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61008868 9 - 192460366 gcatgtACT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59568756 9 + 187378091 GCATGTACT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64504578 9 - 101219884 gcatgtACT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46066319 9 -  98464013 acatgtgCT
i calJac3.chr15                C 0 C 0
e rhiRox1.KN296641v1             1389886 1134 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e canFam3.chr20                 16612696 554 +  58134056 T
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=292821.000000
s hg38.chr14_KI270725v1_random     16508  94 +    172810 TAACTGATGTATTTGTACAGACCACCTCTTAACAACTCCATTTTGACTGGCCTTTTTGTATGTCGTCTGCTCT-GATGAAACAGC-----------GTCAAGACAA
s panTro4.chr3                 201688697  94 - 202329955 TAACTGATGTATTTGTACAGACCACCTCTTAACAACTCCATTTTGACTGGCCTTTTTGTATGTCGTCTGCCCT-GATGAAACAGC-----------GTCAAGACAA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668229  92 + 202140232 TAACTGATGTATTTGTATAGATCACCTCTTAACAACTCCATTTTGACTGGCCTTTTTATATATCGTCTGCTCT-GATG--ATAGT-----------GTCAAGACAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595797  94 +  86207423 TAACTGATGTATTTATATAGACCACCTCTTAACAACTCCATTTTGACTGGCCTTTTTATATATCATCTGCTCT-GATGATTCAGT-----------GTCATGACAA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61852917  94 + 192599291 TAACTGATGTATTTGTATAGACAACCTCTTAACAACTCCATTTTGACTGGCCTTCCCATATATCATCTGCTCT-AATGATGCAGT-----------GTCATGACAA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61008877  94 - 192460366 TAACTGATGTATTTGTATAGACAACCTCTTAACAACTCCATTTTGACTGGCCTTCCCATATATCATCTGCTCT-AATGATGCAGT-----------GTCATGACAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59568765  94 + 187378091 TAACTGATGTATTTGTATAGACAACCTCTTAACAACTCCATGTTGACTGGCCTTTCTATATATCATCTGCTCT-AATGATGCAGT-----------GTCATGACAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64504587  94 - 101219884 TAACTGATGTATTTGTATAGACAACCTCTTAACAACCCCATTTTGACCGGCCTTTCTATATATCATCTGCTCT-AATGATGCAGT-----------GTCATGACAA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46066328 105 -  98464013 TAACCGATATACTTGCATAGACTAATTCTTAACTACTCCATTTTGACTGGCCTTTCAATACATCTTCTGCTCC-AATGATACAGTGTTGATAGAGGGTCATGGCAA
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16612142  95 +  58134056 TGACTGACATCTTTGTATAGACAACTACCTAACAATTCCATTTTGACTGTCCTCACTGTGTAGCTTCTTCTCTGGATGATACAGT-----------GCTGTGCCAA
i canFam3.chr20                T 554 I 552
e rhiRox1.KN296641v1             1389886 1134 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=711733.000000
s hg38.chr14_KI270725v1_random     16602 220 +    172810 TTTAAGAGTATCTTTGCACAAGTTCTTCCCTTCTGAAACACTCTTCTCTCTTTACTTTTTTGCTCTTTGGATCTCAATTGAGCCAAGCCCTCCTATTGCACATCTCCTTGTCATTTT-TTAATTATACTTTctctgtgaccagac-tacatagactaaaaatcca---ctctcaccacttaa-ttaca-tgtgaacatgaacagactcatctagcctgactttgtca
s panTro4.chr3                 201688791 220 - 202329955 TTTAAGAGTATCTTTGCACAAGTTCTTCCCTTCTGAAACACTCTTCTCTCTTTACTTTTTTGCCCTTTGGATCTCAATTGAGCCAAGCCCTCCTATTGCACATCTCCTTGTCATTTT-TTAATTATACTTTctctgtgaccacac-tacatggactaaaaatcca---ctcccaccacttaa-ttaca-tgtgaacatgaacagactcatctagcctgactttgtca
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668321 220 + 202140232 TTTAAGAGTACCTTTGCACAAGTTCCTCCCTTCTGAAACACTCTTCTCTCTTTACTTTTTTGCCCTTTGGATCTCAATTGAGTCAAGCCCTCCTATTGCACCTCTCCTTGTCATTTT-TTAATTATACCTTctctgtgaccagac-tacatggactaaaaatcca---ctcccaccacttaa-ttaca-tgtgaacatgaacagactcatctagcctgactttgtca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67595891 220 +  86207423 TTTAAGAGTACCTTTGCACAAGTTCTTCCCTTCTGAAACACTCTTCTCTCTTTATTTTTTTGCCCTTTGGATCTCAATTGAGTCAAGCCCTCCTATTGCACCTCTCCTTGTCATTTT-TTAATTCTACCTTctctgtgaccagac-tacatgggctaaaaatcca---ctcccaccacttaa-ttaca-tgtgaacatgaacagactcacctagcctgactttgtca
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853011 220 + 192599291 TTTAAGAGTACCTTTGCACAAGGTCTTCCCTTCTGAAATACTCTTCTCTCTTTACTTTTTTGTCCTTTGGATCTCAATTGAATCAAGCCCTCCTATTGCACCTCTCCTTGCCTTTTT-TAAATTATACCTTctctgtgaccagac-tacatggactaaaaatcca---ctcccatcacttaa-ttacc-cgtgaagacgaacagattcatttagcctgattttgtca
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61008971 220 - 192460366 TTTAAGAGTACCTTTGCACAAGGTCTTCCCTTCTGAAATACTCTTCTCTCTTTACTTTTTTGTCCTTTGTATCTCAATTGAATCAAGCCCTCCTATTGCACCTCTCCTTGCCTTTTT-TATATTATACCTTctctgtgaccagac-tacatggactaaaaatcca---ctcccatcacttaa-ttacc-cgtgaagacgaacagattcatttagcctgattttgtca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59568859 220 + 187378091 TTTAAGAGTACCTTTTCACAAGGTCTTCCCTTCTGAAATACTCTtctctctttacttttttgtccTTTGGATCTCAATTGAATCAAGCCCTCCTATTGCACCTCtccttgccttttt-aaaattataccttcTCTGTGACCAGAC-TACATGAACTAAAAATCCA---CTCCCATCACTTAA-TTACC-CGTGAAGACGAACAGATTCATTTAGTCTGATTTTGTCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64504681 220 - 101219884 TTTAAGAGTACATTTGCACAAAGTCTTCCCTTCTGAAACACTCTTCTCTCTTTACTTTTTTGTCCTTTGGATCTCAATTGAATCAAGCCCTCCTATTGCACCTCTCCTTGCCTTTTT-TAAATTATACCTTctctgtgaccagac-tacatggactaaaaatcca---ctcccatctcttaa-ttacc-cgtgaagatgaacagattcatttagcctgattttgcca
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46066433 223 -  98464013 TTTAAGGGCACCTTAGTACAAGTTTTTCCCTTTTGAAACACTCTTCTCTCTTTACTTTTTTGTCCTTTGGATCTCAACTGTGTCAGGCCCTCCTATTGCAGGTTTCCTTGTCATTTTGTTTATTATATCTTCTCTGTGTCCAAAAGTACATAGACTAAAAATTCA---CTCCCATTACTTAATTTAAg-tgtgaacatgagcagattcatttagtcttactttgtca
i calJac3.chr15                C 0 I 2
s canFam3.chr20                 16612789 218 +  58134056 tttaaggGCA--TGTGCACAAGTTCTTCTGTTTTGGAACACTCTTTTCCCTTCATCTTTTCATCCTTTGGATCTCAATTTAGTTAAGGCCTCCTATTGC-CCTCTCTT---CATTCA-TCAGCTATGCCTCccctgcactcagac-tgcatggactcaaaatccagctctgtcagcattaat-ttgcagtgtaaacttaaacagagtcatttaatctgcctttgcca
i canFam3.chr20                I 552 C 0
e rhiRox1.KN296641v1             1389886 1134 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=-950.000000
s hg38.chr14_KI270725v1_random     16822 3 +    172810 tct-
s panTro4.chr3                 201689011 3 - 202329955 tct-
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668541 3 + 202140232 tat-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596111 3 +  86207423 tct-
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853231 3 + 192599291 cct-
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61009191 3 - 192460366 cct-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569079 3 + 187378091 CCT-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64504901 3 - 101219884 ctt-
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46066658 2 -  98464013 -tt-
i calJac3.chr15                I 2 C 0
s saiBol1.JH378290               2551369 2 -   2763108 -tt-
i saiBol1.JH378290             N 0 I 404
s canFam3.chr20                 16613007 3 +  58134056 -caa
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1389886 1134 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=691416.000000
s hg38.chr14_KI270725v1_random     16825 201 +    172810 ttttcttatttgtcaaatagagataataacagtagctttt--cataaggttgttgggaagattgaatgagtta----agataaagcactcaaactatataaatgtcttattgtactcagagctatgttaagtgttaggtattattACATTTATTATCGGTATTCACATTTTATTATTGTTGTATTGGTGGGCATACAGGCTGCTTTG
s panTro4.chr3                 201689014 204 - 202329955 ttttcttatttgtcaaatagagataataacagtagctttt--cataaggttgttgggaagatggaatgagttaatacagataaagcactcaaactatataaatgtcttattgtactcagagctatg-taagtgttaggtattattACATTTATTATCGGTATTCACATTTTATTATTGTTGTATTGGTGGGCATACAGGCTGCTTTG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668544 204 + 202140232 ttttcttatttgtcaaatagagataataacagtagctttt--cataaggttgttgggaagattgaatgagttaatacagataaagcactcacactatataaatgtcttattgtactcagagctatg-taagtgttaggtattattACATTTATTATTGGTATTCACATTTTATTATTGTTGTATTGGTGGGAATACAGGCCGCTTTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596114 204 +  86207423 ttttcttatttgtcaaatagagataataacagtagctttt--tacaaggttgttgggaagattgaatgagttaatacagataaagcactcaaactatataaatgtcttatagtactcagagctatg-taagtgttaggtattattACATTTATTATCAGTATTCACATTTTATTATTGTTTAATTGGTAGGAATACAGGCTGCTTTG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853234 204 + 192599291 ttttcttatttgtcaaagagagataataacagtagttttt--cataaggttgttgcgaagattgaatgagttcatacagataaagcactcaaactatgtaaatgtcttattgcactcagagctatg-taagtgttaggtattattACATTTATTATCGGTATTCACACTTTATTATTGTTGTAGTGGTGGgaatacaggctgctttg
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  61009194 204 - 192460366 ttttcttatttgtcaaagagagataataacagtagttttt--cataaggttgttgcgaagattgaatgagttcatacagataaagcactcaaactatgtaaatgtcttattgcactcagagctatg-taagtgttaggtattattACATTTATTATCGGTATTCACACTTTATTATTGTTGTAGTGGTGGGAATACAGGCTGCTTTG
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59569082 204 + 187378091 TTTTCTTATTTGTCAAAGAGAGATAATAACAGTAGTTTTT--CATAAGGTTGTTGCGAAGATTGAATGAGTTCATACAGATAAAGCACTCAAACTATGTAAATGTCTTATTGCACTCAGAGCTATG-TAAGTATTAGGTATTACTACATTTATTATCGGTATTCACACTTTATTATTGTTGTAGTGGTGGGAATACAGGCTGTTTTG
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64504904 204 - 101219884 ttttcttatttgtcaaagagagataataacagtagctttt--cataaggttgttgcaaagattgaatgagttaatacagataaagcactcaaaccatgtaaatgtcttattgcgctcagagctatg-taagtgttaggtattattACATTTATTATCGGTATTCACACTTTATTATTGTTGTAGTGGTGGGAATACAGGCTGCTTTG
i chlSab2.chr22                C 0 I 1
s calJac3.chr15                 46066660 201 -  98464013 ttttcttatttgtcaaatagacgtaataacagtagctttt--cataaggtggttgagaagattgaatgagttaacacagacaaagcactcaaactatataaatgtcttattgtgctcacaactatg-taagtgttaggtattattACATTTATTACTGGTATTCACATTTTATTATGGTTG---TGGTGGGAATTCAGGCTGCTTTG
i calJac3.chr15                C 0 I 1
s canFam3.chr20                 16613010 202 +  58134056 ttttctttattgtaaaatagggataatattaatactttttaaaatagggttgctggaaaaactaaatgagttaatacaggaaaaacat----actacataaatgctacattgcatttagagctatg-taaatgttaactattaGTAAGTTCAGTATTGATATTGGTATGCTATTATTACTGTGGTGGTGGGAATACAGATTGTTTTG
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1389886 1134 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551371 404 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5500.000000
s hg38.chr14_KI270725v1_random     17026 1 +    172810 G
s panTro4.chr3                 201689218 1 - 202329955 G
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668748 1 + 202140232 G
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596318 1 +  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853439 1 + 192599291 g
i rheMac3.chr2                 I 1 C 0
s macFas5.chr2                  61009399 1 - 192460366 G
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59569287 1 + 187378091 G
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64505109 1 - 101219884 G
i chlSab2.chr22                I 1 C 0
s rhiRox1.KN296641v1             1391020 1 -   1467263 g
i rhiRox1.KN296641v1           I 1134 I 714
s calJac3.chr15                 46066862 1 -  98464013 G
i calJac3.chr15                I 1 C 0
s canFam3.chr20                 16613212 1 +  58134056 G
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551371 404 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=611217.000000
s hg38.chr14_KI270725v1_random     17027 183 +    172810 -ATACCCTTggaatcatgttaatctttctctacctttttattctc-agcatctagttcaatgccacacacacacaaacat--gcttcacaaatgtctgttgaCAAATCAGGTAAATGGCATGGCTTACTGATGTCTAACTGTGGAGATAGTTATCACTCATGG-------------------------------------GCCCACT---------------------GAGAGCAAAAAGAAAGC
s panTro4.chr3                 201689219 182 - 202329955 -ATACCCTGggaatcatgttaatctttctctacctttttattctc-agcatctagttcaatgccacacacacacaaacat--gcttcacaaatgtctgttgaCAAATCAGGTAAATGGCATGGCTTACTGATGTCTAACTG-GGAGATAGTTATCACTCATGG-------------------------------------GCCCACT---------------------GAGAGCAAAAAGAAAGC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668749 183 + 202140232 -ATACCCTGggaatcatgttaatctttctctacctttttattctc-agcatctagttcaatgccatacacacacaaacat--gcttcacaaatgtctgttgaCAAATCAGGTAAATGGCATGGCTTACTGATGTCTAACTGTGGAGATAGTTATCACTCATGG-------------------------------------GCCCACT---------------------GAGAGCAAAAAGAAAGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596319 183 +  86207423 -ATACCCTGggaatcatgttaatctttctctacctttttattctc-agcatctagttcaatgccacacacacaaagacat--gcttcacaaatgtctattgaCAAATCACGTAAATGGCATGGCTTACTGATGTCTAACTGTGGAAATAGTTATCACTCATGG-------------------------------------ACCCACT---------------------GAGAGCAAAAAGAAAGC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853440 183 + 192599291 -ataccctgggaataatgttaatctttctctacctttttattctc-agcatctagttcaatgtcacacacacacaaagat--gctttacaaatgtctgttgaCAAATCAGCTAAATGGCATGGTTTGCTGATGTCTAACTGTTGAGATAGTTATCACTCATGG-------------------------------------GCCCATT---------------------GAGAGCAAAAAGTAAGC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61009400 183 - 192460366 -ATACCCTGGGAATAATGTTAATCTTTCTCTACCTTTTTATTCTC-AGCATCTAGTTCAATGTCACACACACACAAAGAT--GCTTTACAAATGTCTGTTGACAAATCAGCTAAATGGCATGGCTTACTGATGTCTAACTGTTGAGATAGTTATCACTCATGG-------------------------------------GCCCATT---------------------GAGAGCAAAAAGTAAGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569288 183 + 187378091 -ATACCCTGGGAATAATGTTAATCTTTCTCTACCTTTTTATTCTC-AGCATCTAGTtcaatgtcacacacacacaaagat--gctTTACAAATGTCTGTTGATAAATCAGGTAAATGGCATGGCTTACTGATGTCTAACTGTTGAGATAGTTATCACTCATGG-------------------------------------GCCCATT---------------------GAGAGCAAAAAGTAAGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64505110 183 - 101219884 -ATACCCTGGGAATAATGTTAATCTTTCTCTACCTTTTTATTCTC-AGCATCTAGTTCAATGTCACACACACACAAAGGT--GCTTTACAAATGTCTGTTGACAAATCAGGTAAATGGCATGGCTTACTGATGTCTAACTGTCGAGATAGTTATCACTCATGG-------------------------------------GCCCATT---------------------GAGAGCAAAAAGTAAGC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46066863 181 -  98464013 -ATATTCTGggaatcatgttaatctttctctacctttttattctc-agcatctagttcaatgccacacacac--aaagat--gcttcataaatgtctgttgaCAAATCAGATGAATGGCATGATTTACTGATGTCTAACAGTCGAGATTGTTATAACTCATGG-------------------------------------GCCCATT---------------------AAGAGCAAAAAGAAAAC
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16613213 244 +  58134056 GATGAGCCACG-ATCAtgttaatttttctctgcattttgtttttcaagcacctaatacaatgctagacacacaaaaatataagcttaataaatatttattgactaaatagatAAATGGCATGGCTTACTGATGTTTGACTATCTAAATTGTTATCACTCTTGGATACCAATAAAATCCATTAAGAACAACAGTGCTGTGTGCCAACTATATTCAAATAAAAAAATTAAAAGAGCAAAAGGAAAGG
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e mm10.chr6                     45784614 373 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551371 404 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=89847.000000
s hg38.chr14_KI270725v1_random     17210 24 +    172810 TGACAATGGTAAAATAAACTCAGA
s panTro4.chr3                 201689401 24 - 202329955 TGACAATGGTAAAATAAACTCAGA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668932 24 + 202140232 TGACAATGGTAAAATAAACTCAGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596502 24 +  86207423 TGACAAAGGTAAAATAAACTCAGA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853623 24 + 192599291 TGACAATGGTAAAATAAACTCAGA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61009583 24 - 192460366 TGACAATGGTAAAATAAACTCAGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569471 24 + 187378091 TGACAATGGTAAAATAAACTCAGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64505293 24 - 101219884 TGACAATGGTAAAATAAACTCAGA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46067044 18 -  98464013 TGACAATTGTAAAATAGG------
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45784987 24 - 149736546 TGCCATTTATAATATAAAGTCAGA
i mm10.chr6                    I 373 C 0
s canFam3.chr20                 16613457 24 +  58134056 TGACAATGGTGAAATAAATGCAGA
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551371 404 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=21604.000000
s hg38.chr14_KI270725v1_random     17234 5 +    172810 TAGGA
s panTro4.chr3                 201689425 5 - 202329955 TAGGA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668956 5 + 202140232 CAGGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596526 5 +  86207423 TAGGA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853647 5 + 192599291 TAGGA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61009607 5 - 192460366 TAGGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569495 5 + 187378091 TAGGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64505317 5 - 101219884 TAGGA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46067062 5 -  98464013 TAGAG
i calJac3.chr15                C 0 C 0
s saiBol1.JH378290               2551775 5 -   2763108 TAGAG
i saiBol1.JH378290             I 404 I 72
s mm10.chr6                     45785011 5 - 149736546 TAGGG
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16613481 5 +  58134056 TAAAA
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=209019.000000
s hg38.chr14_KI270725v1_random     17239 72 +    172810 CTCAGAAGGACCTGTTTTTACTGACTTGGTTTTAGGATATATCTACACATAGAGAAGGGTTC-----GGACAATTA-T
s panTro4.chr3                 201689430 73 - 202329955 CTCAGAAGGACCTGTTTTTACTGACTTGGTTTTAGGATATATCTACACATAGAGAAGGGTTC-----AGACAATAATT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69668961 72 + 202140232 CTCAGAAGGACCTGTTTTTACTGACTTGGTTTTAGGATATATCTACACATGGAGAAGGGGTC-----GGACAATTA-T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596531 72 +  86207423 CTCAGAAGGACCTGTTTTTACTGACTTGGTTATAGGATATAACTACACATGGAGAAGAGGTT-----GGACAATTA-T
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853652 77 + 192599291 CTCAGAAGGACCTGCTTTTACTGACTTGGTTTTAGCATATATCTACACACGGAGAAGAGGTCCGGTTGGACAATTA-T
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61009612 77 - 192460366 CTCAGAAGGACCTGCTTTTACTGACTTGGTTTTAGCATATATCTACACACGGAGAAGAGGTCCGGTTGGACAATTA-T
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569500 77 + 187378091 CTCAGAAGGACCTGCTTTTACTGACTTGGTTTTAGCATATATCTACACATGGAGAAGAGGTCCGGTTGGACAATTA-T
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64505322 77 - 101219884 CTCAGAAGGACCTGCTTTTACTGACTTGGTTTTAGCATGTATCTACACATGGAGAAGAGGTCTGGTTGGACAATTA-T
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46067067 72 -  98464013 CCCAGAAAAACCTTTTGTTACTGACTTGATTTTAGGATATGTCTACACATGGAGAAGGGGTT-----GGACAATTA-T
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45785016 69 - 149736546 TTTAAAGATGCCTGTCTTTAAAGACATCACCTTAGGCTAAATTTGCATTTGCTTAGATGGCT-----GAATTAT----
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16613486 61 +  58134056 TTAAGAAGTATCTGATTTTACTGCC------AGAGAATATGTCTACACAGGGAGAGTA--TC--------TAATTA-T
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551780 72 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=9404.000000
s hg38.chr14_KI270725v1_random     17311 3 +    172810 AGT
s panTro4.chr3                 201689503 3 - 202329955 AGT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669033 3 + 202140232 AGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596603 3 +  86207423 AGT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853729 3 + 192599291 GGT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61009689 3 - 192460366 GGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569577 3 + 187378091 GGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64505399 3 - 101219884 AGT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46067139 2 -  98464013 -AT
i calJac3.chr15                C 0 I 5
s saiBol1.JH378290               2551852 2 -   2763108 -AT
i saiBol1.JH378290             I 72 I 316
s mm10.chr6                     45785085 3 - 149736546 AGT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16613547 3 +  58134056 TGT
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=387763.000000
s hg38.chr14_KI270725v1_random     17314 126 +    172810 TAGCAAATCAAGCAACAACAGTGTTTCAGACACTTTGATACCAAAATAATTTTCCTCACTTTAAATATAGCA----GTTTTTCCATAAAAATGGCATGCAT----CAGCCAGGTAAAAAAGATACCATGTGTAT
s panTro4.chr3                 201689506 129 - 202329955 TAGCAAGTCAAGCAAAAACAGTGTTTCAGACACTTTGATACCAAAATAATTTTCCTCACTTTAAATATAGCAGTTGGTTTTTCCATAAAAATGGCATGCAT----CAGCAAGGTAAAAAAGATACCATGTGTA-
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669036 127 + 202140232 TAGCAAGTCAAGCAACAACAGTGTTTCAGACACTTTGATACCAAAATAATTTTCCTCACTTTAAATATAGCAATTTGTTTTTCCATAAAAATGACATGCAT----CAGCAAGGTAAAAAAGATACTATGTG---
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596606 127 +  86207423 TAGCAAATCAAGCAACAACAGTGTTTCAGACACTTTGATACCAAAATAATTTTCCTCACTTTAAATATAGCAATTTGTTTTTCCATAAAAATGGCATGTAT----CAGCAAGGTAAAAAAGATACTATGTG---
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853732 130 + 192599291 TAGCAAGTCAAGCAACAACAAAGTTTCAGATACTTTGATATCAAAATAATTTTCCTCACTTTAAATACAGCAATTTGTTTTTCCATAAAAATGGCTTGCAT----CAGCAATGTAAAAAAGATACTATGTGTAt
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61009692 130 - 192460366 TAGCAAGTCAAGCAACAACAAAGTTTCAGATACTTTGATATCAAAATAATTTTCCTCACTTTAAATACAGCAATTTGTTTTTCCATAAAAATGGCTTGCAT----CAGCAAGGTAAAAAAGATACTATGTGTAt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569580 105 + 187378091 TAGCAAGTCAAGCAACAACAAAGTTTCAGATACTttgatatcaaaataattttcctcACTTTAAATATAGCaatttgtttttccataaaaATGGCTTGCAT----CAGC-------------------------
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64505402 130 - 101219884 TAACAAGTCAAGCAACAACAACGTTTCAGATACTTTGATATCAAAATAATTTTCCTCACTTTAAATATAGCAATTTGTTTTTCCATAAAAATGGCTTGCAT----CAGCAAGGTAAAAAGGATACTACGCATAt
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46067146 130 -  98464013 TTGCAAGTCAAGCAACAATAAAGTTTCAGATACTTTGATGCCAAAATAACTTTCCTCACTTTAAATAGAGCAATTTGTTTTTCCATAAAAATGTCATGCAA----CAGCAAGGTAAAAAAGATACTATATGTAT
i calJac3.chr15                I 5 C 0
s mm10.chr6                     45785088  93 - 149736546 TAGTAA------CATAAATGAAGCT--ATATACCT-------------GTGTTGCTCAT-------------GTTTTTTTTTTCATAAAAAT---ATGTGG----CATTTGAGTAAAATTGGCACTATATGTAT
i mm10.chr6                    C 0 I 2031
s canFam3.chr20                 16613550 117 +  58134056 TAGCTATATATTAATCGATAATGTTCTAGATACTTTGACACCACAATAATTTTCCTCACTTTAAATGTTGCAATTTTTATTTCCATCAAAATATCATGCATGAAGCAGCAAGGTAAA-----------------
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551854 316 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=2664.000000
s hg38.chr14_KI270725v1_random     17440 10 +    172810 ATATCACTCA
s rheMac3.chr2                  61853862 10 + 192599291 atatctctca
i rheMac3.chr2                 C 0 I 3
s macFas5.chr2                  61009822 10 - 192460366 atatctctca
i macFas5.chr2                 C 0 C 0
s chlSab2.chr22                 64505532 10 - 101219884 atatctctca
i chlSab2.chr22                C 0 I 3
s calJac3.chr15                 46067276  1 -  98464013 A---------
i calJac3.chr15                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e mm10.chr6                     45785181 2031 - 149736546 I
e canFam3.chr20                 16613667  0 +  58134056 C
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551854 316 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e papAnu2.chr2                  59569685  0 + 187378091 C
e nomLeu3.chr21                 67596733  0 +  86207423 C
e ponAbe2.chr3                  69669163  0 + 202140232 C
e panTro4.chr3                 201689635  0 - 202329955 C

a score=4083.000000
s hg38.chr14_KI270725v1_random     17450 14 +    172810 TGTGTATATATCAT
s panTro4.chr3                 201689635 10 - 202329955 ----TAtatatcac
i panTro4.chr3                 C 0 I 6
s ponAbe2.chr3                  69669163 10 + 202140232 ----TAtgtatcac
i ponAbe2.chr3                 C 0 I 2
s nomLeu3.chr21                 67596733 10 +  86207423 ----TACAtatcac
i nomLeu3.chr21                C 0 I 2
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e mm10.chr6                     45785181 2031 - 149736546 I
e canFam3.chr20                 16613667  0 +  58134056 C
e rheMac3.chr2                  61853872  3 + 192599291 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551854 316 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46067277  0 -  98464013 C
e chlSab2.chr22                 64505542  3 - 101219884 I
e papAnu2.chr2                  59569685  0 + 187378091 C
e macFas5.chr2                  61009832  0 - 192460366 C

a score=-14493.000000
s hg38.chr14_KI270725v1_random     17464 48 +    172810 CATGCATCAGCAAGGTAAAAAAGATACCATGTGTATATATCATCTTTT
s ponAbe2.chr3                  69669175  4 + 202140232 ---------------------aga-----------------------c
i ponAbe2.chr3                 I 2 C 0
s nomLeu3.chr21                 67596745  4 +  86207423 ---------------------aga-----------------------c
i nomLeu3.chr21                I 2 C 0
s macFas5.chr2                  61009832  3 - 192460366 --------------------gag-------------------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569685 33 + 187378091 -----------AAGGTAAAAAAGAtactatgtgtatatatttct----
i papAnu2.chr2                 C 0 I 5
s canFam3.chr20                 16613667 24 +  58134056 -----------GAGGTAAAGAGAATATAATGCGTA-------------
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e mm10.chr6                     45785181 2031 - 149736546 I
e rheMac3.chr2                  61853872  3 + 192599291 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551854 316 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I
e calJac3.chr15                 46067277  0 -  98464013 C
e chlSab2.chr22                 64505542  3 - 101219884 I
e panTro4.chr3                 201689645  6 - 202329955 I

a score=584187.000000
s hg38.chr14_KI270725v1_random     17512 175 +    172810 ttcctgc--agaaaaaagatgacactcaaatttggtaatttgaggaatgtctaaaa-caagcactatttgaatagatgtgggcaggttatagg-aaaattgaaaaggaaGGCAGTAACCTA---------------CAGActatgcctgaaaggatggagggaaataagagtttgcaggaatctggagggaaaa
s panTro4.chr3                 201689651 175 - 202329955 ttgctgc--agaaaaaagatgacactcaaatttggtaatctgaggaatgtctaaaa-caagcactatttgaatagatgtgggcagggtatagg-aaaattgaaaaggaaGGCAGTAACCTA---------------CAGActatgcctgaaaggatggagggaaataagagtttgcaggaatctggagggaaaa
i panTro4.chr3                 I 6 C 0
s ponAbe2.chr3                  69669179 175 + 202140232 ttcctgc--agaaaaaagatgacacttaaatttggtaatttgaggaatgtctaaaa-caagcactatttgaatagatgtgggcaggttatagg-aaaattgaaaaggaaGGCAGTAACCTA---------------CAGActatgcctgaaaggatggagggaaataagagtttgcaggaatctggagggaaaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596749 175 +  86207423 ttcctgc--agaaaaaagatgacactcaaatgtggtaatttgaggaatgtctaaaa-caagcactatttgaatagatgtgggcaggttacagg-aaaattgaaaaggaaGGCAGTAACCTA---------------CAGActatgcctaaaaggatggagggaaataagagtttgcaggaatctggaaggaaaa
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61853875 175 + 192599291 ttcctgc--agagaaaagatgacactcaaatttggtaatttgaggagtgtctaaaa-caggcactatttgaatagatgtgggcaggttatagg-aaaattgaaaaggaaGGCAGTAATCTA---------------CAGActatgactgaaaggatggagggaaataagagtttgcgggaatctggagggtaaa
i rheMac3.chr2                 I 3 C 0
s macFas5.chr2                  61009835 175 - 192460366 ttcctgc--agagaaaagatgacactcaaatttggtaatttgaggagtgtctaaaa-caagcactatttgaatagatgtgggcaggttatagg-aaaattgaaaaggaaggcagtaatcta---------------cagactatgactgaaaggatggagggaaataagagtttgcgggaatctggagggtaaa
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569723 175 + 187378091 ttcctgc--agagaaaagatgacactCAAATTTGGTAATTTGAGGAGTGTCTAAAA-CAAGCACTATTTGAATAGATGTGGGCAGGTTATagg-aaaattgaaaaggaagacagTAATCTA---------------CAGACTATGACTGAAAGGATGGAGGGAAATAAGAGTTTGTGGGAATCTGCAGGGTAAA
i papAnu2.chr2                 I 5 C 0
s chlSab2.chr22                 64505545 175 - 101219884 ttcctgc--agagaaaagatgacactcaaatttggtaatttgaggagtgtctaaaa-caagcactatttgaatagatgtgggcaggttatagg-aaaattgaaaaggaaggcagtaatcta---------------cagactatgcctgaaaggatggagggaaataagagtttgcaggaatctggagggtaaa
i chlSab2.chr22                I 3 C 0
s calJac3.chr15                 46067277 176 -  98464013 --CCTGCCGAAAaaaaagatgacactcaaatttggtaatttgagaagtgtctaaaa-caaggagtatttgaatggatgtgggcagattaagggaaaaattgaaaaggaaggcagaaaccta---------------caggctatgcctgaaaggttggagggaaataagagtttgcaggaatctggagggaaaa
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16613691 183 +  58134056 -TCACTc--agaagac-----atactcaaaattagtcatctaagaagagtctaaaagcagaaactcttttaa-aggtgtgggcaacttgtagc-aaaatcagaaggggtgccagtacccaaaaggcagtgtgttaccaggatatgaatgaaagggtgcagggagaaaagagtttaca-gaacctggagggacag
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e mm10.chr6                     45785181 2031 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2551854 316 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5500.000000
s hg38.chr14_KI270725v1_random     17687 1 +    172810 c
s panTro4.chr3                 201689826 1 - 202329955 c
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669354 1 + 202140232 c
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596924 1 +  86207423 c
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854050 1 + 192599291 c
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61010010 1 - 192460366 c
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569898 1 + 187378091 C
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64505720 1 - 101219884 c
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46067453 1 -  98464013 c
i calJac3.chr15                C 0 C 0
s saiBol1.JH378290               2552170 1 -   2763108 c
i saiBol1.JH378290             I 316 I 1517
s canFam3.chr20                 16613874 1 +  58134056 c
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e mm10.chr6                     45785181 2031 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=295874.000000
s hg38.chr14_KI270725v1_random     17688 90 +    172810 tgtgtggagaga-acacttgacaagaaatgtgacctctggtgggcagatgcagtcagcttggagagaggaagccagggaaa--------caagtacctt-
s panTro4.chr3                 201689827 90 - 202329955 tgtgtggagaga-acacttgacaagaaatgtgacctctggtggggagatgcagtcagcttggagagaggaagccagggaaa--------gaagtacctt-
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669355 98 + 202140232 tgtgtggagaga-acacttgacaagaaatgtgacctctggtgggcagatgcagtcagcttggagagaggaagccagggaaacaagtacccaagtacctt-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67596925 90 +  86207423 tgtgtggagaga-acactttacaagaaatgtgacctctggtaggcagatgcagtcagcttggcgagaagaagccagggaaa--------caagtacttt-
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854051 90 + 192599291 tgtgtggaggga-acacttgacaagaaatgtgacctctggtgggcagatgcagtcagcttggagagaggaagccaggaaaa--------caagtacctt-
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61010011 90 - 192460366 tgtgtggaggga-acacttgacaagaaatgtgacctctggtgggcagatgcagtcagcttggagagaggaagccaggaaaa--------caagtacctt-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59569899 90 + 187378091 TGTGTGGAGGGA-ACACTTGACAAGAAATGTGACCTCTGGTACGCAGATGCAGTCAGCTTGGAGAGAGGAAGCCAGGGAAA--------CAAGTACCtt-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64505721 90 - 101219884 tgtgtggaggga-atacttgacaagaaatgtgacctttggtgggcagatgcagtcagcttggagagaggaagccagggaaa--------caagtacctt-
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46067454 90 -  98464013 tgtgtggagaga-ccacttgacaagatatgtgacctctggtgggcagatgctgtcagcttgaagagaggaagccaggggaa--------caagtacctc-
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16613875 85 +  58134056 tctgtggagaggcccacgtggcaggaagtatgatctttgatggaaggata----cagGATGTAAGAAGGAAGCCAGAGAAA--------TA---ATCTTG
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e mm10.chr6                     45785181 2031 - 149736546 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=36382.000000
s hg38.chr14_KI270725v1_random     17778 10 +    172810 acttctctct
s panTro4.chr3                 201689917 10 - 202329955 acttctctct
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669453 10 + 202140232 acttctctct
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597015 10 +  86207423 acttctctct
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854141 10 + 192599291 acttctctct
i rheMac3.chr2                 C 0 I 1
s macFas5.chr2                  61010101 10 - 192460366 acttctctct
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59569989 10 + 187378091 acttctctct
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64505811 10 - 101219884 acttctctct
i chlSab2.chr22                C 0 I 1
s calJac3.chr15                 46067544 10 -  98464013 acccctctct
i calJac3.chr15                C 0 I 1
s mm10.chr6                     45787212 10 - 149736546 ATTTATCTCC
i mm10.chr6                    I 2031 C 0
s canFam3.chr20                 16613960  9 +  58134056 ACTTCACTT-
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391021 714 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=4664.000000
s hg38.chr14_KI270725v1_random     17788 1 +    172810 t
s panTro4.chr3                 201689927 1 - 202329955 t
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669463 1 + 202140232 t
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597025 1 +  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854152 1 + 192599291 t
i rheMac3.chr2                 I 1 C 0
s macFas5.chr2                  61010112 1 - 192460366 t
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59570000 1 + 187378091 t
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64505822 1 - 101219884 t
i chlSab2.chr22                I 1 C 0
s rhiRox1.KN296641v1             1391735 1 -   1467263 t
i rhiRox1.KN296641v1           I 714 I 228
s calJac3.chr15                 46067555 1 -  98464013 t
i calJac3.chr15                I 1 C 0
s mm10.chr6                     45787222 1 - 149736546 T
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16613969 1 +  58134056 C
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=755813.000000
s hg38.chr14_KI270725v1_random     17789 225 +    172810 cctcagataccttttcctgccatcattcctccagaagtttctcttgacagccaaacaaccaggagccagtagaaagaaaactctaagttagaattcacacacgtcagtttcatgaacacagagcagggtagggaaggctgaagagtaatttggaagagcaaaggaaagatgtcG---AATGCATAAAgtccactaagtttgggaaacattgggttaaacaaagctaca
s panTro4.chr3                 201689928 225 - 202329955 cctcagataccttttcctgccctcattcctccagaagtttctcttgacagccaaacaaccaggagccagtagaaagaaaactccaagttagaactcacacacgtcagtttcatgaacacagagcagggtagggaagcctgaagagtaatttggaagagcaaaggaaagatgtcG---AATGCATAAAgtccactaagtttgggaaacattgggttaaacaaagctaca
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669464 222 + 202140232 cctcagataccttttcctgccctcattcctccagaagtttctcttgacagccaaacaaccaggagccagtagaaagaaaactccaagttagaactcacacacgtcagtttcatgaacacagagcaaggtagggaaggctgatgagtaatttgg-agagcaaagg-aagatgtcG---AATGCATAAAgtccactaagtttgagaaacattgggtt-aacaaagctaca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597026 225 +  86207423 cctcagataccttttcctgccctcattcctccagaagtttctcttgacagccaaacaaccaggagccagtagaaagaaaactccaagttagaactcacacacgtcagtttcatgaacacagagcagggtagggaaggctgaagagtaatttggaagatcaaaggaaagatgtcG---AATGCATAAAgtccactaagtttgggaaacattgggttaaacaaagttaca
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854153 225 + 192599291 cctcagatgccttttcctgccctccttccttcagaagtttctcttgatagtcaaacaaccaggagccagtaggaaggaaagcccaagttagaactcacacaggtcagtttcatgaacacagagcagggtagggaaggctgaagagtaatttggaagagcaaaggaaagatgtTG---AATGCATTAAgtccactaagtttgggaaacattgggttaaacaaagctaca
i rheMac3.chr2                 C 0 I 3
s macFas5.chr2                  61010113 225 - 192460366 cctcagatgccttttcctgccctccttccttcagaagtttctcttgatagtcaaacaaccaggagccagcaggaaggaaagcccaagttagaactcacacaggtcagtttcaagaacacagagcagggtagggaaggctgaagagtaatttggaagagcaaaggaaagatgtTG---AATGCATTAAgtccactaagtttgggaaacattgggttaaacaaagctaca
i macFas5.chr2                 C 0 I 3
s papAnu2.chr2                  59570001 225 + 187378091 cctcagaTGCCTTTTCCTGCCCTCCTTCCTTCAGAAGTTTCTCTTGATAGTCAAACAACCAGGAGCCAGTAGGAAGGAAACCCCAAGTTAGAACTCACACAGGTCAGTTTCATGAACACAGAGCAGGGTAGGGAAGGCTGAAGAGTAATTTGGAAGAGCAAAGGAAAGATGTTG---AATACATTAAGTCCACTAAGTTTGGGAAACATTGGGTTAAACAAAGCTAca
i papAnu2.chr2                 C 0 I 3
s chlSab2.chr22                 64505823 224 - 101219884 cctcagaggccttttcctgccctccttcctccagaagtttctcttgatagtcaaacaaccaggagccagtaggaaggaaaccccaagttagaactcacacaggtcagtttcatgaacacagagcagggtagggaaggctgaagagtaatttggaagagcaaaggaaagatgtTG---AATGCATTAAGTTCACtaagttt-ggaaacattgggttaaacaaagctaca
i chlSab2.chr22                C 0 I 3
s calJac3.chr15                 46067556 225 -  98464013 tcttagattccttttcctgccctccttcctccagaagtttctcttgatagccagacaaccagaagccagtagaaaggaaaccccatgttagaactcacacaggtcagttccatgaacacagagcagggtaaggaagactgaagagtaatttggaagagcaaaggaaagatgcct---aatgcaTCAAGTGCACtaaatttgggaaacattgggttaaacaaagctaca
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45787223 189 - 149736546 CCTCAAAAATTTTTTCCTCCCCTCC-ACTTCCAGAGACTT-TTTTCATTACCAAACAGTTAGATGCCTACAGAAGGGAAACTCAGGGT-------------------GTTCA---------AGCAGGG-AGAGATTGTTGAATAGAGATTGTAGATAG-AAAGAAAAAACACTC---TACATATAAGGTCAACTAGATCTGAGAAACAGAAGGGTACAGCTAGC----
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16613970 194 +  58134056 CCTCAAAC-CCTTCTCCCTCCCTCCTTTCTCCAGAGGGTGCTCAGCACTACTACAATACTACAAGTCAGTAGAAGGGAAACCCAATGTTATAACCCATCCAGGGTAGCTCCATGAATACAGAGGTGGA------------AAAATAAACCTGGAGGGGCAAAGGAAAGATGATAGCTAATGCATAAGGTCAATGAACTTTGAGaaac---------------------
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391736 228 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=8800.000000
s hg38.chr14_KI270725v1_random     18014 2 +    172810 ta
s panTro4.chr3                 201690153 2 - 202329955 ta
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669686 2 + 202140232 ta
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597251 2 +  86207423 ta
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854381 2 + 192599291 ta
i rheMac3.chr2                 I 3 C 0
s macFas5.chr2                  61010341 2 - 192460366 ta
i macFas5.chr2                 I 3 C 0
s papAnu2.chr2                  59570229 2 + 187378091 ta
i papAnu2.chr2                 I 3 C 0
s chlSab2.chr22                 64506050 2 - 101219884 ta
i chlSab2.chr22                I 3 C 0
s rhiRox1.KN296641v1             1391964 2 -   1467263 ta
i rhiRox1.KN296641v1           I 228 I 287
s calJac3.chr15                 46067781 2 -  98464013 ta
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16614164 1 +  58134056 -a
i canFam3.chr20                C 0 C 0
e mm10.chr6                     45787412 0 - 149736546 C
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=826594.000000
s hg38.chr14_KI270725v1_random     18016 290 +    172810 attttcttttctgcaggatttctcagatcctttaaatgtgaatgcaaactacaactctccaggaagagggaaaaaatgtgccaagcatgccaaatgtt---taaccacacaacctcccattcttgtagaacaccttaacagactct----tgtcccatgtgacacactC--TAACATTTTCCAATGTTAGTATCTTGTAAATATTCAGGGTCAACCCATCATACCCCAAGTATTAAATTAATTTTGCCTGAAGAGTT-GGTGTCTTAATTGGTAGAATTAGTATATTCCATTTCTCT--AGC--
s panTro4.chr3                 201690155 290 - 202329955 attctcttttctgcaggatttctcagatcctttaaatgtgaatgcaaactataactctccaggaagagggaaaaaatgtgccaagcatgccaaatgtt---taaccacacaacctcccattcttgtagaacaccttaacagactct----tgtcccatgtgacacactc--tAACATTTTCCAATGTTAGTATCTTGTAAATATTCAGGGTCAACCCATCATACCCCAAGTATTAAATTAATTTTGCCTGAAGAGTT-GGTGTCTTAACTGGTAGAATTCATATATTCCATTTCTCT--AGC--
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669688 222 + 202140232 attttcttttctgcaggatttctcagatcctttaaATGTG-ATGC-AACTATAA----------------------------------------------------------------------NNNNNNNNNNTTAACAGACTCT----TGTCCCATGTGACACACTC-TTAACATTTTCCAATGTTAGTATCTTGTAAATATTCAGGGTCAACCCATCATACCCCAAGTATTAAATTAATTTTGCCTGAAGAGTT-GGTGTCTTAATTGGTAGAATTCATATATTCCATTTCTCT--AGC--
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597253 293 +  86207423 attttcttctctgcaggatttctcagatcctttaaatgtgaatgcaaactataactctccaggaagagggagaaaatgtgccaagcatgccaaatgtt---taaccacacaacctcccattcttgtagaacaccttaacagacttt----tgtcccatgtgacacactctTTAACATTTTCCAATGTTAGTATCTTGTAAATATGCAGGGTCAACCCATCATACCCCAAGTATTAAATTAATTTTGCCTGAAAAGTTGGGTGTCTTAATTGGTAGAATTCATATATTCCATTTCTCT--AGC--
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854383 286 + 192599291 attttcttttctgcaggatttctcagatcctttaaatgtgaataaaaactataactcctcaggaagagggagaaaatgtgccaagcatgccaaatgtt---taaccacacaacctcccattcttgtagaattccttaacagactct----tgtcccatgtggcacactctttggaa------aaTATTAGTATATTGTAAATATTCAGGGTCAACCCATCTTACCCCAAGTATTAAATTAATTTTGTCTGAAGAGAT-GGTGGCTTAATTGGTAGAATTCACATATTCCATTTCTCT--AGC--
i rheMac3.chr2                 C 0 I 2
s macFas5.chr2                  61010343 286 - 192460366 attttcttttctgcaggatttctcagatcctttaaatgtgaataaaaactataactcctcaggaagagggagaaaatgtgccaagcatgccaaatgtt---taaccacacaacctcccattcttgtagaattccttaacagactct----tgtcccatgtggcacactctttggaa------aaTATTAGTATATTGTAAATATTCAGGGTCAACCCATCTTACCCCAAGTATTAAATTAATTTTGTCTGAAGAGAT-GGTGGCTTAATTGGTAGAATTCACATATTCCATTTCTCT--AGC--
i macFas5.chr2                 C 0 I 2
s papAnu2.chr2                  59570231 286 + 187378091 attttcttttctgcaggATTTCTCAGATCctttaaatgtgaataaaaacTATAACTCcccaggaagagggagaaaatgtGCCAAGCATGCCAAATGTT---TAACCACACAACCTCCCATTCTTGTAGAATTCCTTAACAGACTCT----TGTCCCATGTGGCACACTCTTTGGAA------AATGTTAGTATCTTGTAAATATTCAGGGTCAACCCATCTTACCCCAagtattaaattaattttgtctGAAGAGAT-GGTGGCTTAATTGGTAGAATTCACATATTCCATTTCTCT--AGC--
i papAnu2.chr2                 C 0 I 2
s chlSab2.chr22                 64506052 286 - 101219884 attttcttttctgcaggatttctcagatcctttaaatgtgaataaaaactataactccccaggaagaaggagaaaaggtgccaagaatgccaaatgtt---taaccacacaacctcccattcttgtagaactccttaacagactct----tgtcccatgtggcacactctttggaa------aatgttAGTATCTTGTAAATATTCAGGGTCAACCCATCTTACCCCAAGTATTAAATTAATTTTGTCTGAAGAGAT-AGTGGCTTAATTGATAGAATTCACATATTCCATTTCTCT--AGC--
i chlSab2.chr22                C 0 I 2
s calJac3.chr15                 46067783 286 -  98464013 attttcttttctgcaggatttctcagatcctttaaatgtgagtacaaatcataactctcccaaaagagggagaaaatgtgccaaccatgacaaatgtt---taaccacacaacctcccgttcttgtagaaccccttaacagacttt----tgtgccatgtaacacactctttaaaa------aacgttgTTGTCTTGTAAATATTCAGGGTCAACCCATGTTACTCCAAGTATTACATTAATTTTTCCTGAAGAGAT-GCTGTCTTAATTGGTAGAATTCATATATTCCATTTCACT--AGC--
i calJac3.chr15                C 0 I 2
s mm10.chr6                     45787412 271 - 149736546 -------------AAGGACCTCTCAACTTTTTT-TATGCCAGTGTAAATTATGATTGTCTAGCTTAAGTGTGAAGAAGTACAAGGCACTCC--ATGCTCACTGAACCCTGAATTCCATGTTTTGGTAGAACT-TTTAAGAGAGGTG----TTTCCTGTGTCACAACTTTTAAAAAA------AATGGTGGCTTCTCATGACTTCTATTGATCAAGCAACTTTACTAAACTTTTCGAACTAATATCCCCTAAAATAAT-GTTGTCTTCATGTATAGTCTTAATA---TTCATGTCTCTGCAAC--
i mm10.chr6                    C 0 I 2
s canFam3.chr20                 16614165 255 +  58134056 attttccatactgcaggatttctcacagccttgaaatgctaatatgaattatgactc----------------AGATGTAA--------------------TTATTACAGAATCTCTGTTCTTAAAAAAACACCTTG--AGACTAGGAAATGCCCCTTGAGTGACACTT--TGGAA------AATGGCAGATTCTCATAAATATCAAGAGTTAACCAATGTTACCTCAAGTATCAAATTAATTTTGCCTGGAGAGAT-GCTATTTTAATTGGAATGGTTCATATAGTCCACCTCCCT--GAATC
i canFam3.chr20                C 0 C 0
e rhiRox1.KN296641v1             1391966 287 -   1467263 I
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=11759.000000
s hg38.chr14_KI270725v1_random     18306 2 +    172810 CC
s panTro4.chr3                 201690445 2 - 202329955 CC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669910 2 + 202140232 CC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597546 2 +  86207423 CC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854671 2 + 192599291 CC
i rheMac3.chr2                 I 2 C 0
s macFas5.chr2                  61010631 2 - 192460366 CC
i macFas5.chr2                 I 2 C 0
s papAnu2.chr2                  59570519 2 + 187378091 CC
i papAnu2.chr2                 I 2 C 0
s chlSab2.chr22                 64506340 2 - 101219884 CC
i chlSab2.chr22                I 2 C 0
s rhiRox1.KN296641v1             1392253 2 -   1467263 CC
i rhiRox1.KN296641v1           I 287 N 0
s calJac3.chr15                 46068071 2 -  98464013 CC
i calJac3.chr15                I 2 C 0
s mm10.chr6                     45787685 2 - 149736546 TC
i mm10.chr6                    I 2 C 0
s canFam3.chr20                 16614420 2 +  58134056 CC
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=1422060.000000
s hg38.chr14_KI270725v1_random     18308 402 +    172810 AAATTGTAGAACTTTCAGAGCTTCAAATAATTCTGGGCATTCCTCTACTCTGATGGGTTCAATCGGCAGATAAAATAATGAAGACATTGAAAAATAAAGTGGCTTGGGCAAAAACGAGAGCTATTCCTCTTGCACCAAAATTTAGAATTTTAACATGAGTCTCTAGACTC-GGTCTTACAACTTTCCA-----AACTATCA--GGTTTAGAACACAATGGAGTTTTTAAAACCAGATTCAGAAATTAATGCACACACAGTTAATATAGGTAGATGGTACATCCTATTTTCTGCACTGCTAAGATA-TCCACTAGGCCTATATTACTTCCATCAGAAGCAAATAAACTTGCCCTTTTCATAACCCAAAAGTAGAATTCAAGAATTCATTGCCCTCAAAATTGGTTCACCCAA
s panTro4.chr3                 201690447 402 - 202329955 AAATTGTAGAACTTTCAGAGCTTCAAATAATTCTGGGCATTCCTCTACTCTGATGGGTTCAATCGGCAGATAAAATAATGAAGACATTGAAAAATAAAGTGGCTTGGGCAAAAACGAGAGCTATTCCTCTTGCACCAAAATTTAGAATTTTAACATGAGTCTCTAAACTC-GGTCTTACAACTTTCCA-----AACTATCA--GGTTTAGAACACAATGGAGTTTTTAAAACCAGATTCAGAAATTAATGCACACACAGTTAATATAGGTAGATGGTACATCCTATTTTCTGCACTGCTAAGATA-TCCACTAGGCCTATATTACTTCTATCAGAAGCAAATAAATTTGCCCTTTTCATAACCCAAAAGTAGAATTCAAGAATTCATTGCCCTCAAAATTGGTTCACCCAA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69669912 402 + 202140232 AAAATGTAGAATTTTCAGAGCTTCAAATAATTCTGGGCATTCCTCTACTCTGATGGGTTCAATTGGCAGATAAAATAATGAAGACATTGAAAAATAAAGTGGCTTGGGCAAAAATGAGAGCTATTCCTCTTGCACCAAAATTTGGAATTTTAACATGAGTCTCTAGACTC-GGTCTTACAACTTTCCA-----AACTATCA--GGTTTAGAACACAATGGAGTTTTTAAAACCAGATTCAGAAATTAATGCACACATGGTTAATATAGGTAGATGGTACATCCTATTTTCTGCACTGCTAAGATA-TCCACTAGGCCTATATTATTTCTATCAGAAGCAAATAAATTTGCCCTTTTCATAACCCAAAAGTAGAATTCAAGAATTCATTGCCCTCAAAATTGGTTCACCCAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597548 394 +  86207423 AaattgtagaactttcagagcttcacataatcctgggcattcctctactctgatgggttcaattggcagataaaataatgaagacattgaaaaataaagtggcttgggcaaAAACGAGAGCTATTCCTCTTGCACCAAAATTTAGAATTTTAACATGAGTCTCTAGACTC-GGTCTTACAACTTTCCA-----AACTATCA--GGTTTAGAACACAATGGAGTTTTTAAAACCAGATTCAGAAATTAATGCACACACAGTTAATACAGGTAGATGGTACATCCTATTTTCTGCACTGCTAAGATA-TCCACTAGGCCTATATTACTTCTATCAGAAGCAAATAAATTTGCCCTTTTCATAACCCAAAAGTAGAATTCAA--------TGCCCTCAAAATTGGTTCACCCAA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61854673 402 + 192599291 AAATTGTAGAACCTTCAGAGCTTCAAATAATTCTGGGCATTCCTCTACTCTGATGGGTTCAATTGGCAGATAAAATAATGAAGACATTGGAAAATAAAGTGGCTTGGACAAAAACGAGAGCTATTCCTCTTGCACCAAAATCTAGAATTTTAACATGAGTCTCTAGACTC-GGTCTTACAACTTTCCA-----AACTATCA--GGTTTAGAACATGATGGAGTTTTTAAAACCAGATTCAGAAATTAATGCACAAACAGTTAATATAGGTAGATGGTACATCCTATTTTCTGCACTGCTAAGATA-TCGACTAGCCCTATATTACTTCTATCGGAAGCAAATAAATTTGCCCTTTTCAGAACTCAAAGTTAGAATTAAAGAATTCATTGCCCTCAAAATTGGTTCACCCAA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61010633 402 - 192460366 AAATTGTAGAACTTTCAGAGCTTCAAATAATTCTGGGCATTCCTCTACTCTGATGGGTTCAATTGGCAGATAAAATAATGAAGACATTGGAAAATAAAGTGTCTTGGGCAAAAACGAGAGCTATTCCTCTTGCACCAAAATCTAGAATTTTAACATGAGTCTCTAGACTC-GGTCTTACAACTTTCCA-----AACTATCA--GGTTTAGAACATGATGGAGTTTTTAAAACCAGATTCAGAAATTAATGCACAAACAGTTAATATAGGTAGATGGTACATCCTATTTTCTGCACTGCTAAGATA-TCGACTAGCCCTATATTACTTCTATCGGAAGCAAATAAATTTGCCCTTTTCAGAACTCAAAGTTAGAATTAAAGAATTCATTGCCCTCAAAATTGGTTCACCCAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59570521 402 + 187378091 AAATTGTAGAACTTTCAGAGCTTCAAATAATTCTGGGCATTCCTCTACTCTGATGGGTTCAATTGGCagataaaataatgaagacattGGAAAATAAAGTGGCTTGGACAAAAACGAGAGCTATTCCTCTTGCACCAAAATCTAGAATTTTAACATGAGTCTCTAGACTC-GGTCTTACAACTTTCCA-----AACTATCA--GGTTTAGAACATGATGGAGTTTTTAAAACCAGATTCAGAAATTAATGCACAAACAGTTAATATAGGTAGATGGTACATCCTATTTTCTGCACTGCTAAGATA-TCGACTAGCCCTATATTACTTCTATCGGAAGCAAATAAATTTGCCCTTTTCAGAACTCAAAGTTAGAATTAAAGAATTCTTTGCCCTCAAAATTGGTTCGCCCAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64506342 402 - 101219884 AAATTATAGAACTTTCAGAGCTTCAAATAATTCTGGGCATTCCTCTACTCTGATGGGTTCAATTGGCAGATAAAATAATGAAGACATTGGAAAATAAAGTGACTTGGATAAAAACGAGAGCTATTCCTCTTGCACCAAAATTTAGAATTTTAACATGAGTCTCTAGACTC-GGTCTTACAACTTTCCA-----AACTATCA--GGTTTAGAACACGATGGTGTTTTTAAAACCAGATTCAGAAATTAATGCACAAACAGTTAATATAGGTAGATGGTACATCCTATTTTCTGCACTGCTAAGATA-TCGACTAGGCCTATATTACTTCTATCGGAAGCAAATAAATTTTCCCTTTTCAGAAATCAAAGTTAGAATTAAAGAATTCATTGCCCTCAAAATTGGTTCACCCAA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46068073 391 -  98464013 AAATTATAGAACTTTCAGAGCTTCAAATGATTGTGGGCATTTCTCTGCTCTAATGGGTTCAGCTGGCAGATCAAATAATGAAGACATTGAAAAATAAAATGGCTTAGTCAAAAAGAAGAGCTAGGGCCCTTACATCAAAATTTAGAATTTTAACATGAGTCTCTAGACTT-GGTTCTACAACTTTCCA-----AACTATCA--TGTTTAGAATACAAT----TTTTTCAAACCAGATTCAGAAATTAAT------ATAGTTAATATAGGTAGATGGTACACCCTATTTTCTGCACTGCTAAGATT-TTGACTAGGCCTATATTACTTCTGTGGGAAGCAAATGAATTTGCCCTTTTCTTAACTCAAAG-TAGAATTCAAGAATTCATTGCCCTCAAAATTGGTTCTTCCAA
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45787687 356 - 149736546 AAGCTGAAAAACTTCTACTGCGTTGAAGG--TTAGACTACTCATCCATTTGAATGTGTCCCCGAGGCAGATAAAACAATGC--ACTTGGAGCAATGTAGCGG-TAAGACCGAAACATGCACAGTACCCATTCCAAC--------------------------CTCCACTCAGGGCATCCCACTCTCC-------ACTAGTACTGATTCAG--------------TTTAGGATAAAATCCAGAAACCAGTGCCAATGTAGTTCACACCAGTAGATATTTTATTCTTCTTGAGGTCATGCTAAGAGGCTTGTCTAGGCCTATACTACTTCTATGGGAAACACATTAGCTG--TTTTTTTGCAACTCAGAG-TAGAATTTGAGAATTCATTGCCCTCAAAATGCATTTTCTCAT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16614422 383 +  58134056 AAATTAGAGAATTCTTTGAGCCCCAAATGACTATGAACATTCAACTACTCAGACA-GTACAACTGGCAGTCAATATAATGGAGACTTTTAGAAATGGAGACATCTGGCCAAACACCAGAGGTAATACTTTCACACCAA---------------------TCTCTAAACTT-AAACTTGCTACTTTCCACTTGTATTTATCA--AGTGTAGAACACTGTGGAGTTTTTAAAACTAGATGCAGAAACTAATACATACATAGTTCACGCAGGTAGATGGC-CATCCCATTTGCCTCACTGCAAAGATT-TTGACTAGGCCTATATTACTTCTATTAGAAGCAAATGAATTTGCCCTTTTCACAACTCAATG-TGGAATTCAAGAATTCACTGCTCTCAAAATTGGTTCTCACAA
i canFam3.chr20                C 0 C 0
e micMur1.scaffold_1480            34818 19199 -    329962 I
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=51975.000000
s hg38.chr14_KI270725v1_random     18710 14 +    172810 CTTGATTTTTTTCT
s panTro4.chr3                 201690849 14 - 202329955 CTTGATTTTTTTCT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69670314 14 + 202140232 CTTGATTTTTTTCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597942 14 +  86207423 CTTGATTTTTTTTT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855075 14 + 192599291 CTTGATTATTTTCT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011035 14 - 192460366 CTTGATTATTTTCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59570923 14 + 187378091 CTTGATTATTTTCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64506744 14 - 101219884 CTTGATTATTTTCT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46068464 12 -  98464013 CTTGAC--TTTTCT
i calJac3.chr15                C 0 C 0
s micMur1.scaffold_1480            54017 14 -    329962 tttttttttttttt
i micMur1.scaffold_1480        I 19199 N 0
s mm10.chr6                     45788043  9 - 149736546 -----TTTTTCTCT
i mm10.chr6                    C 0 I 12
s canFam3.chr20                 16614805 14 +  58134056 TTTGACTTTTTTTT
i canFam3.chr20                C 0 I 5
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=2036434.000000
s hg38.chr14_KI270725v1_random     18724 490 +    172810 GTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAATGAACACAGAgtgttgtgcaagtgggcttgcccttggtaacagacacagctgtgcctatcaaacac-aaaatatggtatttaattttggaaaattgctaacagcaggcagaactgtacaaaggacagtcaccttcaactgtcacttaggaagaaacaaagATATCAGGAACAGTACCATTTTTCCAAATATTTCCAGGCTACAGTTGCATTCGGTGTCTTTCCAGAACAACTGAACAATGAAATGGATAGTAATCTGCCAAATGCATACAGCTGTATGCCTGTTT-CCTGGGG---TTTATATT-AGGGCCTGGGGAAACA--AAGTTAAGGAAGTAAGGCTGCAGGGTAGCATCAGTCCATCCACTACAGTCCGATTCAGATTCAGATGGTCAGATTGGACTCTAAAGTGGAATTCCTAGTATAATACAGTCTTCACTT-CCTTACAATATGGTTCCTGG
s panTro4.chr3                 201690863 491 - 202329955 GTAAAACTGGGTTCTAAATAAAGTTATCAGTATATAAATGAACACAGAGTGTTATGCAGGTGGGCTTGCCCTTGGTAACAGACACAGCTGTGCCTATCAAACAC-AAAATATGGTATTTAATTTTGGAAAATTGCTAACGGCAGGCAGAACTGTACAAAGGAAAGTCACCTTCAACTGTCACTTAGGAAGAAACAAAGATATCAGGAACAGTACCATTTTTCCAAATGTTTCCAGGCTACAGTTGCATTTGGTGCCTTTCCAGAACAACTGAACAATGAAATGGATAGTAATCTGCCAAATGCATACAGCTGTATGCCTGTTTGCCTGGGG---TTTATATT-AGGGCCTGGGGAAACA--AAGCTAAGGAAGTAAGGCTGCAGGGTAGCATCAGTCCATCCACTATAGACCGATTCAGATTCAGATGGTCAGATTGGACTCTAAGGTGGAATTCCTAGTATAATACAGTCTTCACTT-CCTTACAATGTGGTTCCTGG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69670328 491 + 202140232 GTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAACGAACACAGAGTGTTGTGCAGGTGGGCTTGCCCTTGGTAACAGACACAGCTGTGTCTATCAAACAC-AAAATATGGTATTTAATTTTGGAAAATTGCTAACGGCAGGCAGAACTGTACAAAGGAAAGTCACCTTCAACTGTCACTCAGGAAAAAACAAAGATATCATGAACAGTATCATTTTTCCAAATGCTTCCAGGCTAGAGTTGCATTCGGTGCCTTTCCGGAACCACTGAACAACGAAATGGATAGTAATCTGCCAAATGCATACAGCTGTGTGCCTGTTTGCCTGGGG---TTTATATT-AGGGCCTGGGGAAACA--AAGTTAGGGAAGTAAGTCTCCAGGGTAGCATCAGTCCATCCACTATAGTCCGATTCAGATTCAGATGGTCAGACTGGACTCTAAGGTGGAATTCCTAGTATAATACAGTCTTCACTT-CCTTATAATGTGGTTCCTGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67597956 491 +  86207423 GTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAATGAACACAGAGTGTTGTGCAGGTGGGCTTGCCCTTGGTAACAGACACAGCTGTGCCTATCAAACAC-AAAATATGGTATTTAATTTTGGAAAATTGCTAACGGCAGGCAGAACTGTACAAAGGAAAGTCACCTTCAACTCTCACTCAGGAAGAAACAAAGATATCATGAACAGTATCATTTTTCCAAATGTTTCCAGGCTAAAGTTGCATTCGGTGCCTTTCCAGAACCACTGAACAATGAAACCGGCAGTAATCTGCCAAATGCATACAGCTGTGTGCCTGTTTGCCTGGGG---TTTATATT-AGGGCCTGGGGAAACA--AAGTTAGGGAAGTAAGGCTCCAGGGTAGCATCAGTCCATCCACTATAGTCCGATTCAGATTCAGATGGTCAGATTGGACTCTACGGTGGAATTCCTAGTATAATATGGTCTTCACTT-CCTTACAATGGGGTTCCTGG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855089 491 + 192599291 GTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAATGAATGCAGAGTGTTGCGCAAGTGGGCTTGCCCTTGGTAACAGACACACCTGTGCCTATCAAACAC-AAAATATGGTATTTAATTTTGGAAAATTGCTAACGGCAAGCAGAATTGTACAAAGGAAAGTCACCTTCAACTGTCACTAAGGAAGAAACAAAGATATCATGAACAGTATTATTTTTCCAAATGTTTCCAGGCTAGAGTTGCATTCGGTGCCTTTCCAGAACCACTGAACAATGAAATGGGCAGTAATCTGCCAAACCCATACAGCTGTGTGCCTGTTTGCCTGGGG---TGTATATT-AGGGCCTGCGAAAACA--AAGTTAGGGAAGTAAGGCTCCAGGGTAGCGTCAGTCCATCCACTATAGTCCGATTCGGATTCAGATGGTCAGATTGGACTCTAAGGTGGAATTCTTAGTATAATGCAGTCTTCGCTT-CCATACAATGTGGTTCCTGG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011049 491 - 192460366 GTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAATGAATGCAGAGTGTTGCGCAGGTGGGCTTGCCCTTGGTAACAGACACACCTGTGCCTATCAAACAC-AAAATATGGTATTTAATTTTGGAAAATTGCTAACGGCAAGCAGAATTGTACAAAGGAAAGTCACCTTCAACTGTCACTAAGGAAGAAACAAAGATATCATGAACAGTATTATTTTTCCAAATGTTTCCAGGCTAGAGTTGCATTCGGTGCCTTTCCAGAACCACTGAACAATGAAATGGGCAGTAATCTGCCAAACCCATACAGCTGTGTGCCTGTTTGCCTGGGG---TGTATATT-AGGGCCTGCGAAAACA--AAGTTAGGGAAGTAAGGCTCCAGGGTAGCGTCAGTCCATCCACTATAGTCCGATTCGGATTCAGATGGTCAGATTGGACTCTAAGGTGGAATTCTTAGTATAATGCAGTCTTCGCTT-CCATACAATGTGGTTCCTGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59570937 491 + 187378091 GTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAATGAATGCAGAGTGTTGCGCAGGTGGGCTTGCCGTTGGTAACAGACACACCTGTGCCTATCAAACAC-AAAATATGgtatttaattttggaaaattgctAACGGCAAGCAGAATTGTACAAAGGAAAGTCACCTTCAACTGTCActaaggaagaaacaaagatatCATGAAcagtattatttttccaaatgtttccaGGCTAGAGTTGCATTCGGTGCCTTTCCAGAACCACTGAACAATGAAATGGGCAGTAATCTGCCAAACCCATACAGCTGTGTGCCTGTTTGCCTGGGG---TGTATATT-AGGGCCTGCGAAAACA--AAGTTAGGGAAGTAAGGCTCCAGGGTAGCGTCAGTCCATCCACTATAGTCCGATTCGGATTCAGATGGTCAGACTGGACTCTAAGGCGGAATTCTTAGTATAATGCAGTCTTCGCTT-CCATACAATGTGGTTCCTGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64506758 491 - 101219884 GTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAATGAATGCAGAGTGTTGCACAGGTGGGCTTGCCCTTGGTAACAGACACACCTGTGCCTATCAAACAC-AAAATATGGTATTTAATTTTGGAAAATTGCTAACGGCAAGCAGAATTGTACAAAGGAAAGTCACCTTCAACTGTCACTAAGGAAGAAACAAAGATATCATGAACAGTATTATTTTTCCAAATGTTTCCAGGCTAGAGTTGCATTCGGTGCCTTTCCAGAACCACTGAACAATGAAATGGGCAGTAATCTGCCAAACCCATACAGCTGTGTGCCTGTTTGCCTGGGG---TGTATATT-AGGGCCTGCGAAAACA--AAGTTAGGGAAGTAAGGCTCCAGGGTAGCGTCAGTCCATCCACTATAGTCCGATTCGGATTCAGATGGTCAGATTAGACTCTAAGGTGGAATTCTTAGTATAATGCAGTCTTCGCTT-CCATACAATGTGGTTCCTGG
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46068476 487 -  98464013 GTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAATGAA--CAGAGTGTTGTGCAGGTGGGTTTGCCCTTGGTA--GGGCACAGCTGTGCCTATCAAACAC-AAAATATGGTATTTAATTTTGGAAAATTGCTAACGGCAGGCAGAATTATACAAAAGAAAGTCACCTTCAACTGTCACTCAGGAAGAAACAAAGATATCATGAACAGTATTATTTTTCCAAATGTTTCCAGGCTAGAGTTGCATTCGGTGCCCTTCCAGAACCACTGAACAATGAAATGGGTAGTAATCTGCCAAATGCATACAGCTGTGTGCCTGTTTTCCTGGGG---TGTATATT-GGGGCCTGGGGAAACA--AAGTTGGAGAAGTAAGGCTCCAAGGTAGTGTCATTCCATCCACTATAGACTGATGTAGATTCAGACAGTCAGAATGGACTCTAAGGAGGAACTCATATTATAATACAGTCTTTACTT-CCTTACACTGTGGTTCCTGA
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45788064 481 - 149736546 GTAAAACTTGGTTCCAAATAAAGTGTTCAGTATATAGATGATCACAGAGTGCCGTGCAGGTGGATTTGCCCTTGGTACCAGACACAGCTGTGCCTATTAAATAC-AAAATATGGTATTTAATTTGGGAAAATTGCTAACGGCAGGCAGGATTGTGCAAGGGAAAGTCACCTTCAACTGTCAGTCAGAACAAGACAAAGATGTCATGAACAGAAGTGTTTTTCCAAATGTTTCTGTGCTACAATTGCGTTTGGTGGCTTTTCAGAGGCACTGAACAATGAAATGGGTAGCAATTTGCCAAGCACATACAGCTGTGTGTCTGTTTGCCTGGAG---TGTGAGTTGGGGGCTTGAGGAAATG--GGGTTAGAGAAACAAGGATGATGGCTATCACCAGCTCATCTATTATATGCC------AATTGCACTGGTCAGAATGGCTTCCTAGGTGCAATTCATATTATAATGCACTTTCCAATT-CCTCTCCA-----CTGCTGG
i mm10.chr6                    I 12 I 6
s canFam3.chr20                 16614824 493 +  58134056 CTAAAACTGGGTTCTAAATAAAGTTCTCAGTATATAAATGAACACAGAGTGCTGTGCAGGTGGGTTTGCCCTTGGTA--AGACACAGCTGTGCCTATCAAATACAAAAATATGGTATTTAATTTTGGAAAATTGCTAACGGCAGGCAGGACTGTATGAGGGAAAGTCACCTTTAACTGTCAATCAGGAAGAAACAAAGATATCAGGAACAGGATTAGTTTTCCGAATGCTTCCAGGCTAGAACTGCATCCGATGCCCTTCCAGAAGCACTGAACAATGAAATGGGTAGCTAGTTGCCAAGCACATACAGCTGTGTGTCTATTTGCCGGGGGGTTTGTGTTTT-GGGGTCTGAGAAAAAATGAGGTTGGGGAAGTAAGCATTGAAAGTAGCGTCAGCCCATCATCTGTTAT---ATGCCAATTCTGCTGGTCAGAACAAACTCCGAGATAGAATTTATATTATAATGCAGTCCTCACTTACTTTTCATTGATATTCTTCA
i canFam3.chr20                I 5 C 0
e saiBol1.JH378290               2552171 1517 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=5005.000000
s hg38.chr14_KI270725v1_random     19214 1 +    172810 T
s panTro4.chr3                 201691354 1 - 202329955 T
i panTro4.chr3                 C 0 C 0
s nomLeu3.chr21                 67598447 1 +  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855580 1 + 192599291 T
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011540 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59571428 1 + 187378091 T
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64507249 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46068963 1 -  98464013 T
i calJac3.chr15                C 0 C 0
s saiBol1.JH378290               2553688 1 -   2763108 T
i saiBol1.JH378290             I 1517 I 101
s mm10.chr6                     45788551 1 - 149736546 T
i mm10.chr6                    I 6 C 0
s canFam3.chr20                 16615317 1 +  58134056 T
i canFam3.chr20                C 0 C 0
e otoGar3.GL873534              11060385 21041 +  30473821 I
e ponAbe2.chr3                  69670819 0 + 202140232 C

a score=355679.000000
s hg38.chr14_KI270725v1_random     19215  96 +    172810 TTTTTATCCTTTACATTGGCACTGTTCAAGCAGCA-CCTTTTGCCACCATGCAATTAT-CTTTTGGCAACCCTGGGCA---GCTGTTTGTGGAGAGTGTGT
s panTro4.chr3                 201691355  99 - 202329955 TTTTTATCCTTTACGTTGGCACTGTTCAAGCAGCA-CGTTTTGCCACCATGCAATTAT-CTTTTGGCAACCCTGGGCAGTTGTTGTTTGTGGAGAGTGTGT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69670819  96 + 202140232 TTTTTATCCTTTACCTTGGCACTGTTCAAGCAGCA-CGTTTTGCCACCACGCAATTAT-TTTTTGGCAACCCTGGGCA---GTTGTTTGTGGAGAGTGTGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67598448  99 +  86207423 TTTTTATCCTTTACCTTGGCACTGTTCAAGCAGCA-CGTTTTGCCACCATGCAATTAT-CTTTTGGCAACGCTGGGCAGCTGTTGTTTGTGGAGAGTGTGT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855581  99 + 192599291 TTTTTATCCTTTACCTTGGCACTGTTCAAGCAGTA-CATTTTGCCACCACGCAATTAT-CTTTTGACAACCCAGGGCAGTTGTTGTTTGTGGAGAGTGTGT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011541  99 - 192460366 TTTTTATCCTTTACCTTGGCACTGTTCAAGCAGTA-CATTTTGCCACCACGCAATTAT-CTTTTGACAACCCAGGGCAGTTGTTGTTTGTGGAGAGTGTGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59571429  98 + 187378091 GTTTTATCCTTTACCTTGGCACTGTTCAAACAGTA-CATTTTGCCACCACGCAATTAT--TTTTGACAACCCAGGGCAGTTGTTGTTTGTGGAGAGTGTGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64507250  99 - 101219884 TTTTTATCCTTTACCTTGGCACTGTTCAAGCAGCA-CGTTTTGCCACCACGCAATTAT-CTTTTGACAACCCAGGGCAGTTGTTGTTTGTGGAGATTGTGT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46068964  99 -  98464013 TTTTTATCCTTTACCTTGGCACTGTTCAAGCAGCA-GGTTTTGTCACCATGCAATTAT-CTTTTGGCAAGTCTAGGCAGTTGTTGCTTGTGGAGAATGTGT
i calJac3.chr15                C 0 I 18
s mm10.chr6                     45788552 101 - 149736546 GTTTTATCCCATACTTTGGCACAAGATGGGTTGCAGTATTTCACAATGCTGCAATTATTCTTTTGACAAATCCAGGCAGTTGACATTTATGAATCAAGTAG
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16615318 101 +  58134056 TTTTTATCCCTTACTTTGGCAGAGCTCAAACAGCAGTGTCTCACCATGGTGCAATTACTCTTTTGGCAACTCCAGGCAGTTGTTAGTAGTGGAGAATGTGT
i canFam3.chr20                C 0 C 0
e saiBol1.JH378290               2553689 101 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=-7170.000000
s hg38.chr14_KI270725v1_random     19311 2 +    172810 -GG
s panTro4.chr3                 201691454 2 - 202329955 -GG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69670915 2 + 202140232 -GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67598547 2 +  86207423 -GG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855680 2 + 192599291 -GG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011640 2 - 192460366 -GG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59571527 2 + 187378091 -GG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64507349 2 - 101219884 -GG
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46069081 1 -  98464013 -G-
i calJac3.chr15                I 18 I 1
s saiBol1.JH378290               2553790 1 -   2763108 -G-
i saiBol1.JH378290             I 101 I 331
s mm10.chr6                     45788653 1 - 149736546 --G
i mm10.chr6                    C 0 I 1
s canFam3.chr20                 16615419 2 +  58134056 AG-
i canFam3.chr20                C 0 C 0
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=505695.000000
s hg38.chr14_KI270725v1_random     19313 126 +    172810 TGGCATTGAACACCTACATGCTTATATATACAGGTGGCTGAAGTTAACCAATTATTCAGAGGCAGTTAGATGAATCATGCATTTAAGGACTTGTCTGATTCACATCTCTACCTCATATGTAGAGGA
s panTro4.chr3                 201691456 126 - 202329955 TGGCATTGAACACCTACATGCTTATATATACAGGTGGCTGAAGTTAACCAATTATTCAGAGGCAGTTAGATGAATCATGCATTTAAGGACTTGTCTGATTCACATCTCTACCTCACATGTAGAGGA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69670917 126 + 202140232 TGGTATTGAACACCTACATGCTTATAAATACAGGTGGCTGAAGTTAACCAATTATTCAGAGGCAGTTAGATGAATCATGCATTTAAGCACTTGTCTGATTCACATCTCTACCTCGTATGTAGAGGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67598549 126 +  86207423 TGGCATTGAACACCTACATGCTTATAAATACAGGTGGCTGAAGTTAACCAATTATCCAGAGGCAGTTAGATGAATCATGCAATTAAGCACTTGTCTGATTCACATCTCTACCTCATATGCGGAGGA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855682 126 + 192599291 TGGTATTGAACACCTACATGCTTATAAATACAGGTGGCTGAAGTTAACCAATTATTCAGAGGCAGTTAGATGAATCATGTATTTAAGCACTTGTCTGATTCACATCTCTACCTCATATGTAGAGGA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011642 126 - 192460366 TGGTATTGAACACCTACATGCTTATAAATACAGGTGGCTGAAGTTAACCAATTATTCAGAGGCAGTTAGATGAATCATGTATTTAAGCACTTGTCTGATTCACATCTCTACCTCATATGTAGAGGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59571529 113 + 187378091 TGGTATTGAACAACTACATGCTTATAAGTACAGGTGGCTGAAGTTAACCAATTATTCAGAGGCAGTTAGATGAATCATGTATTTAAGCACTTGTCTGAT-------------TCATATGTAGAGGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64507351 126 - 101219884 TGGCATTGAACACCTACATGCCTATAAATACAGGTGGCTGAAGTTAACCAATTATTCAGAGGCAGTTAGATGAATCACGTATTTAAGCACTTGTCTGATTCACATCTCTACCTCATATGTAGAGGA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46069083 123 -  98464013 ---TGTCGAACACCTACATGCTTATAAATACAGGTGGCTGAAGTTAATCAATTATTCAGAGGCAGTTAGATGAATCATGTATTTTAGCACTTGTCTGATTCACATCTCTACTTCAAATGTAGAGGA
i calJac3.chr15                I 1 C 0
s mm10.chr6                     45788655 124 - 149736546 TGGCACCCCATACCTCTGTGCTCATGAATACAGGTGGC-AAAGCTGACCAATTATTCAGAGGCAGCTAGATGCAGCACATGTTTTGGTGTGTGTCTGATTCCCATTCCTACTCCA-ATGTAGAGGG
i mm10.chr6                    I 1 C 0
s canFam3.chr20                 16615421 122 +  58134056 TGGCACGGAACACCTCCGGGCTTATAAATACAGGTGGCCTAAGTTAACCAATTATTTAGAGGC----AGATAAGTCATGCAGTTTAGCAGTTGTCTGATTCACATCTCTACTCCACATATAGAGGA
i canFam3.chr20                C 0 C 0
e saiBol1.JH378290               2553791 331 -   2763108 I
e otoGar3.GL873534              11060385 21041 +  30473821 I

a score=6006.000000
s hg38.chr14_KI270725v1_random     19439 1 +    172810 T
s panTro4.chr3                 201691582 1 - 202329955 T
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69671043 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67598675 1 +  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855808 1 + 192599291 T
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011768 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59571642 1 + 187378091 T
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64507477 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46069206 1 -  98464013 T
i calJac3.chr15                C 0 C 0
s otoGar3.GL873534              11081426 1 +  30473821 T
i otoGar3.GL873534             I 21041 N 0
s mm10.chr6                     45788779 1 - 149736546 T
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16615543 1 +  58134056 T
i canFam3.chr20                C 0 C 0
e saiBol1.JH378290               2553791 331 -   2763108 I

a score=706982.000000
s hg38.chr14_KI270725v1_random     19440 189 +    172810 TCTTTTCTCCCCAGTAAAA-TTTTATGGAGATTTACTATGGAGGGCAGATGTCCTGGTTCTAGCACGACATGGTGGACTGGAATGGAATCAAAGATGCTCTTCCAATCTTTTAGGTGTAATACATCAGTGTTAACACTCACTCATTCATATAGCAGGGGTAAATAATTAAGAGTGTGGCATCATAGAAGC
s panTro4.chr3                 201691583 189 - 202329955 TCTTTTCTCCCCAGTGAAA-TTTTATGGAGATTTACTATGGAGGGAAGATGTCCTGGTTCTAGCACGACGTGGTGGACTGGAATGGAATCAAAGATGCTCTTCCAATCTTTTAGGTGTAATACATCAGTGTTAACACTCACTCATTCATATAGCAGGGGTAAATAATCAAGAGTGTGGCATCATAGAAGC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69671044 185 + 202140232 TCTTTTCTCTCCAGAAAAA-TTTTATGGAGATTTACTATGGAGGGCAGATGTCCTGATTCTAGCATGACATGGTGGACTGGAATGGAATCAAAGGTGCTCTTCCAATCTTTTAGGTGTAATACATCAGTGTTAA----CACTCATTCATATAGCAGGGGTAAATAATCAAGACTGGGGCATCATAGAAGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67598676 189 +  86207423 TCTTTTCTCCCCTGTAAAA-TTTTATGGAGATTTACCATGGAGGGCAGATGTCCTGGTTCTAGCATGACATGGTGGACTGGAATGGAATCAAAGGTGCTCTTCCAATCTTTTAGGTGTAATACATCAGTGTTAACACTCACTCATTCATATAGCAGGGGTTAATAATCAAGACTGGGGCATCATAGAAGC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855809 188 + 192599291 TCTTTTCTCCCTAGTAAAA-TTTTATGGAGATTTACTGTGGAGAGCAGATGTCCTGGTTCTAGCATGACATAGTGGACTGGAATGGAATCAAAGGTG-TCTTCCAATCTTTTAGGTGTAATACATCAGTCTTAACATTCACTCACTCATATAGCAGAAGTAAATAATCAAGACTGGGTCATCGTAGAAGC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011769 188 - 192460366 TCTTTTCTCCCTAGTAAAA-TTTTATGGAGATTTACTGTGGAGAGCAGATGTCCTGGTTCAAGCATGACATGGTGAACTGGAATGGAATCAAAGGTG-TCTTTCAATCTTTTAGGTGTAATACATCAGTCTTAACATTCACTCACTCATATAGCAGAGGTAAATAATCAAGACTGGGTCATCGTAGAAGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59571643 188 + 187378091 TCTTTTCTCCCTAGTAAAA-TTTTATGGAGATTTACTGTGGAGAGCAGATGTCCTGGTTCTAGCATGACATGGTGGACTGGAATGGAATCAAAGGTG-TCTTCCAATCTTTTAGGTGTAATACATCAGTCTTAACATTCACTCACTCATATAGCAGAGGTAAATAATCAAGACTGGGTCATCGTAGAAGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64507478 188 - 101219884 TCTTTTCTCCCTAGTAAAA-TTTTATGGAGATTTACTGTGGAAAGCAGATGTCCTGGTTCTAGCATGACATGGTGGACTGGAATGGAATCAAAGGTG-TCTTCCAATCTTTTAGGTGTAATACATCAGTCTTAACATTCACTCATTCATATAGCAGAGGTAAATAATCAAGACTGGGTCATCATAGAAGC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46069207 189 -  98464013 TCTTTTCTCCCCAGTAAAA-TTTTATGTAGATTTACTATGGAGAGCAGATGTCCTGGTTCTAGCATTACATGGTGAACTGGAATGGAATCAAAGGTGCTCTTTCAGTCTTTTATGTGTAATATATCAGCGTTAACACTCACTCATTCATATAGCAGGGGTAAATAATCAAGACTGGGACAACATGGAAGC
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45788780 183 - 149736546 TCTTTTCTCT-GGGCTGAA-TTACATGGAGTTTTACTGTAGAGAGCAGATGTCCTAATTCAACCACTCCATGGTACACTGGAATGGATTCAAAGGTA-TACTCCAGTC-TTTGCGTATAATTTATCAGTGGGAACACTCACTGATTC-TATAGCAAA--CACATAATCAGATCCAAAACATCGTTGAAAT
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16615544 184 +  58134056 TCCTTTTTCCCTGGTGAGATTTTTATGGAGCTTTACTAGGAAGACCAGATGTCCTGGTACTTGCATCACATGATAGACTGGAGTAGATTCAAAGGTGCTCTTCCAGTGTTTCAGGTGTGGTATATCAGTGCTATCACTGACTGACTC-TCCAGCAGA--TAAATA---AAGATTGGGACATCACAGAAGC
i canFam3.chr20                C 0 C 0
e saiBol1.JH378290               2553791 331 -   2763108 I

a score=4664.000000
s hg38.chr14_KI270725v1_random     19629 1 +    172810 A
s panTro4.chr3                 201691772 1 - 202329955 A
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69671229 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67598865 1 +  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855997 1 + 192599291 A
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61011957 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59571831 1 + 187378091 A
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64507666 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46069396 1 -  98464013 A
i calJac3.chr15                C 0 C 0
s saiBol1.JH378290               2554122 1 -   2763108 A
i saiBol1.JH378290             I 331 I 470
s mm10.chr6                     45788963 1 - 149736546 G
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16615728 1 +  58134056 A
i canFam3.chr20                C 0 C 0

a score=1719954.000000
s hg38.chr14_KI270725v1_random     19630 471 +    172810 GCAAGTCTTGAATTGTGGAGAGTCCTGCTTTTTTGTTGTCATTTTATTTTCAGTTTAGCTGAAAGTACACAGTCTTCCTTGTTTCGAACATTTTCTACTTT---AT---GGCAATAGATTAAATTTAATCATGTTTTAGTTCACAAATTGTTTCTTGGTGTATAT-----GTGTTTTTATTTTCCACTATGTCATTATTTCAAAA----------GAATCTACTGCTCTTCTGGTTAAATTCGCTTACCAACACTCT------TTGCCTCT--AAAAAAAAAGATGAATAACAGAGCCCAATTTGAAATGGCCATCTCTGTTACTCCA---ATTAACATACTGTATGTACGTGTGTATTGCAAAAAATAACTAGATTTTCCTGGGCTTGGCATCACTAAAATGTCCAAAAAATATCTTATTCCCATGAACATAAACTTCAAAATGTCAACTGCATTTACAATTACGAATAATAGCGAGCTGCCATTCCC-AAGGGAAATAATGA
s panTro4.chr3                 201691773 470 - 202329955 GCAAGTCTTGAATTGTGGAGAGTCCTGCTTTTTTGTTGTCATTTTATTTTCAGTTTAGCTGAAAGTACATAGTCTTCCTTGTTTCGAACATTTTCTACTTT---AT---GGCAATAGATTAAATTTAATCATGTTTTAGTTCACAAATTGTTTCTTGGTGTATAT-----GTGTTTTTATTTTCCACTATGTCATTATTTCAAAA----------GAATCTACTGCTCTTCTGGTTAAATTCGCTTACCAACACTCT------TTGCCTCT---AAAAAAAAGATGAATAACAGAGCCAAATTTGAAATGGCCATCTCTGTTACTCCA---ATTAACATACTGTATATACATGTGTATTGCAAAAAATAACTAGATTTTCCTGGGCTTGGCATCACTAAAATGTCCAAAAAATATCTTATTCCCATGAACATAAACTTCAAAATGTCAACTGCATTTACAGTTACGAATAATAGCGAGCTGCCATTCCC-AAGGGAAATAATGA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69671230 470 + 202140232 GCAAGTCTTGAATTGTGGAGAGTCCTGCTTTTTTGTTGTCATTTTATTTTCAGTTTAGCTGAAAGTACACAGTCTTCCTTGTTTTGAACATTTTCTACTTC---AT---GGCAATAGATTAAATTTAATCATATTTTAGTTCACAAAGTGTTTCTTGGTGTATAT-----GTGTTTTTATTTTCCACTATGTCATTATTTCAAAA----------GAATCTACTGCTCTTCTGGTTAAATTCACTTACCAACACTCT------TTGCCTCT---AAAAAAAAGATGAATAACAGAGCCAAATTTGAAATGGCCATCTCTGTTACTCCA---ATTAACATACTGTATATACATGTGTATTGCAAAAAATAACTAGATTTTCCTGGGCTTGGCGTCACTAAAATGTCCAAAAAAAATCTTATTCCCATGAACATAAACTTCAAAATGTCAATTGCATTTACAACTATGAATAATAGAGAGCTGCCATTCCC-AAGGGAAATAATGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67598866 468 +  86207423 GCAAGTCTTGAATTGTGGAGAGTCCTGCTTTTTTGTTGTCATTTTATTTTCAGTTTAGCTGAAAGTACACAGTCTTCCTTGTTTCGAACATTTTCTACTTC---AT---GGCAATACATTAAATTTAATCATGTTTTAGTTCACAAATTGTTTCTTGGTGTACAT-----GTGTTTTTATTTCCCACTATGTCATTATTTCAAAA----------GAATCTACTGCTCTTCTGGTTAAATTCGCTTACCAACACTCT------TTGCCTCT---AAAAAAAAGATGAATA--AGAGCCAAATTTGAAATGGCCATCTCTGTTACTCCA---ATTAACATACTGTATATACATGTGTATTGCAAAAAATAACTAGATTTTCCTGGGCTTGGCATCACTAAAATGTCCAAAAAATATCTTATTCCCATGAACATAAACTTCAAAATGTCAATTGCATTTACAATTATGAATAATAGCGAGCTGCCATTCCC-AAGGGAAATAATGA
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61855998 470 + 192599291 GCAAGTCTTGAATTGTGGAGAGTCCTGCTTTTTTGTTGTCATTTTATTGTCAGTGTAGCTGAAAGTAC--AGTCTTCCTTATTTCAAATGTTTT-TACTTC---AT---GGCAATAGATTACATTTAACCATGTTTTAGTTCACAAATTGTTTTTTGATGTATAT-----GTGCTTTTATTTTCCACTATGTCATTATTTCAAAA----------GAATCGACTGCTCTTCTGGTTAAATTCGCTTACCAACACTCT------TTGCCTTTAAAAAAAAAATGATGAATAACAGAGCCAAATTTGAAATGGCCATCTCTGTTACTCCA---ATTAACATGCTGTATATACATGTGTATTGCAAAAAATAACTAGATTTTCCTGGGCTTGGCATCCCTAAAATGTCCAAAGAATATCTTAGTCCCATGAACCTAAACTTCAGAATGTCAATTGCATTTACAATTATGAATAATAGCGAGCTGCCATTCCC-AAGGGAAATAATGA
i rheMac3.chr2                 C 0 I 3
s macFas5.chr2                  61011958 470 - 192460366 GCAAGTCTTGAATTGTGGAGAGTCCTGCTTTTTTGTTGTCATTTTATTGTCAGTGTAGCTGAAAGTAC--AGTCTTCCTTATTTCAAACGTTTT-TACTTC---AT---GGCAATAGATTACATTTAACCATGTTTTAGTTCACAAATTGTTTTTTGATGTATAT-----GTGCTTTTATTTTCCACTATGTCATTATTTCAAAA----------GAATCGACTGCTCTTCTGGTTAAATTCGCTTACCAACACTCT------TTGCCTTTTAAAAAAAAATGATGAATAACAGAGCCAAATTTGAAATGGCCATCTCTGTTACTCCA---ATTAACATGCTGTATATACATGTGTATTGCAAAAAATAACTAGATTTTCCTGGGCTTGGCATCCCTAAAATGTCCAAAGAATATCTTAGTCCCATGAACCTAAACTTCAGAATGTCAATTGCATTTACAATTATGAATAATAGCGAGCTGCCATTCCC-AAGGGAAATAATGA
i macFas5.chr2                 C 0 I 3
s papAnu2.chr2                  59571832 470 + 187378091 GCAAGTCTTGAATTGTGGAGAGTCCTgcttttttgttgtcattttattgtCTGTGTAGCTGAAAGTAC--AGTCTTCCTTATTTCAAACGTTTT-TACTTC---AT---GGAAATAGATTACatttaaccatgttttatttcacaaattgttttttgatgtatat-----gtgtttttattttccactatgtcactatttCAAAA----------GAATCGACTGCTCTTCTGGTTAAATTCGCTTACCAACActct------ttgcctttaaaaaaaaaatgatgaataacAGAGCCAAATTTGAAATGGCTATCTCTGTTACTCCA---ATTAACATgctgtatatacatgtgtattgcAAAAAATAACTAGATTTTCCTGGGCTTGGCATCCCTAAAATGTCCAAAGAATATCTTAGTCCCATGAACCTAAACTTCAAAATGTCAATTGCATTTACAATTATGAATAATAGTGAGCTGCCATTCCC-AAGggaaataatga
i papAnu2.chr2                 C 0 I 3
s chlSab2.chr22                 64507667 470 - 101219884 GCAAGTCTTGAATTGTGCAGAGTCCTGCTTTTTTGTTGTCATTTTATTGTCAGTGTAGCTGAAAGTAC--AGTCTTCCTTATTTCAAACATTTG-TACTTC---AT---GGCAATAGATTACATTTAACCATGTTTTAGTTCACAAATTGGTTTTTGATGTATAT-----GTGTTTTTATTTTCCACTATGTCATTATTTCAAAA----------GAATCAACTGCTCTTCTGGTTAAATTCGCTTACCAACACTCT------TTGCCTTTAAAAAAAAAAAGATGAATAACAGAGCCAAATTTGAAATGGCCATCCCTGTTACTCCA---ATTAACATGCTGTATATACATGTGTATTGCAAAAAATAACTAGATTTTCCTGGGCTTGGCATCCCTAAAATGTCCAAAGAATATCTTATTCCCATGAACCTAAACTTCAAAATGTCAATTGCATTTACAATTATGAATAATAGCGAGCTGCCATTCCC-AAGGGAAATAATGA
i chlSab2.chr22                C 0 I 3
s calJac3.chr15                 46069397 468 -  98464013 GCAAGTCTTGAACTGTGGAGAGCCTTGCTTTTTTGTTGTCATTTTATTGTCATTTTAGCCAAAAGTACACAGTCTTCCTTGTTTCAAACATTTTCTACTTC---AT---AACAATAGAATAAATTTAATCATGTTTTAGTTCACAAATTGTTTCTTCATGTAT-T-----GTGTTTTTCTTTTCCATTATGTTATTATTTCAAAA----------CAGTCAATTGCTCTTCTGGTTAAATTCACTTACCAACCTTCT------TTGCCTCT---GAAATAAACATGAATAACAGAGCCAAATTTGAAATGACCATCCCTTTTACTCTA---ATTAACATACTGTATATACATATGTATTACAAAAAATAACTACATTTTCCTGAACTTGGCAGCCCTAAAATATCCAAA-AATATCTTAGTCCCATGAACATAAACTTCAAAATGTCAATTGCATTTACAATTATGAATAATAGTGAACTGCCATTCCC-AAGGGAAATAATAA
i calJac3.chr15                C 0 I 3
s mm10.chr6                     45788964 451 - 149736546 GCCAAC-----ATTGTTAAGA------------TCTTGTCATTTTA----------AACTGAAAGTACAAGGTCTTCCTTGTGTCAAACATTTCCCACTTT---ACAGAGGCAATTAATTCCG-TTAAGCATGGTTTAGTTCTCAAATTAGTTCTTCCTGCCTGTCTTGAGTGTCTCGAGTCTTCAC-------CTATTACAGAATGGAAAGAACAAGTCATTTGCACATCCATTTAAGTTGACCTCTTAGTTTTTTTTTTTATTTTCTCT--AAAAGTCAGAATGAA---------CAGACCTGAGATGGCCATTGGGATTAATGCATACGTTAATATG--ATAGGTTCATATGTATTACAAAAAA-AGCTATGTTTTCTTAAACTTGACATCTCCAAAATACCCCCAAACTATCTTAGTCCCATGGACAT-AACTTCAAAATGTCAGCTGCATTTACAATTACGAATAATAGTGAAATTCTACTCCTGGGGGGGAATAATAA
i mm10.chr6                    C 0 C 0
s canFam3.chr20                 16615729 457 +  58134056 GCTAGCCT---AGCCTGGAGTGTCCTGCTTTCATGTCGTCTTTTTATTGCCATTTTAACTGAAAGTACA-GACCATCCTTGTTTCAAACATTTTTTACTTTACAAT---GGCAACAGATTCCATTTAATGACACTTTACTTCACAAATTGTTGCTTCATGCATAT-------GTCTTTATTCTCCATAATTTCAAT------GAA----------GAGTCCATTGTTCTGCTTGTTAAACTCACTTTCCAACCTTCT------TTGTTCCC-----TAGAAACATGAATAATAAAGCC-AATCTGAAATGGTCATCTAAGTTAGCCCA---ATTAACATATGGTAGATACATATGGATTACAAAGAAAAACTAGATTTTCCTGGGCTTCATATCCCAAAAATGCCCAAA-AATATCTTATCCCCATGAACATAAACTTCAAAATGTCAATCGCATTTACAATTATGAATAATAGGGAACTGTTGCTCCC-AAGGGAAATAATAA
i canFam3.chr20                C 0 I 3
e saiBol1.JH378290               2554123 470 -   2763108 I

a score=20532.000000
s hg38.chr14_KI270725v1_random     20101 3 +    172810 AAG
s panTro4.chr3                 201692243 3 - 202329955 AAG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69671700 3 + 202140232 AAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67599334 3 +  86207423 AAG
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61856471 3 + 192599291 AAG
i rheMac3.chr2                 I 3 C 0
s macFas5.chr2                  61012431 3 - 192460366 AAG
i macFas5.chr2                 I 3 C 0
s papAnu2.chr2                  59572305 3 + 187378091 aag
i papAnu2.chr2                 I 3 C 0
s chlSab2.chr22                 64508140 3 - 101219884 AAG
i chlSab2.chr22                I 3 C 0
s nasLar1.chr2                  57743466 3 + 181502896 AAG
i nasLar1.chr2                 N 0 I 635
s calJac3.chr15                 46069868 3 -  98464013 AAG
i calJac3.chr15                I 3 C 0
s saiBol1.JH378290               2554593 3 -   2763108 AAG
i saiBol1.JH378290             I 470 I 1006
s mm10.chr6                     45789415 3 - 149736546 GAG
i mm10.chr6                    C 0 I 3
s canFam3.chr20                 16616189 3 +  58134056 AAG
i canFam3.chr20                I 3 C 0

a score=744578.000000
s hg38.chr14_KI270725v1_random     20104 168 +    172810 AAATATTTCATAG-T----------TTTTTTAGCAAAAACAAATGATTTGCATGTTTCCACCAAAAGGGAATAAAACCCTTAATATGGAATATCCCTCAGGTCTCCTTTTTGGAAACAAAATTCATAACCACCTGCCATTTGATGAAATCTAATAAATTCCTAATATAGCATACACTCC
s panTro4.chr3                 201692246 169 - 202329955 AAATGTTTCATAGAT----------TTTTTTAGCAAAAACAAATGATTTGCATGTTTCCACCAAAAGGGAATAAAACCCTTAATATGGAATATCCCTCAGGTCTCCTTTTTGGAAACAAAATTCATAACCACCTGCCATTTGATGAAATCTAATAAATTCCTAATATAGCATACACTCC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69671703 179 + 202140232 AAATGTTTCATAGATGTCATAGATGTTTTTCAGCAAAAACAAATGATTTGCATGTTTCCACCAAAAGGGAATAAAACCCTTAATATGGAATATCCCTCAGGTCTCCTTTTTGGAAACAAAATTCATAACCACCTGCCACTTGATGAAATCTAATAAATTCCTAATATAGCATACACTCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67599337 167 +  86207423 AAATGTTTCATAGAT---------GTTTTTTAGCAAAAACAAATGATTTGCATGTTTCCACCAAAAGGGAATAAAACCCTTAATATGGAATATCCCTCAGGTCTCCTTTTTGGAAACAAAATTCATAACCACCTGCCATTTGATGAAATCTAATAAATTCCTCATATAGCATACA---C
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61856474 170 + 192599291 AAATGTTTCATAGAT---------GTTTTTTAGCAAAAACAAATGATTTGCATGTTTCCACCAAAAGGGAATAACACTCTTAATATGGAATATCCCTTTGGTCTCCTTTTTGGAAACAAAATTCATAACCACCTGCCATTTGATGAAATCTAATAAATTCTTAATATAGAATACACTCC
i rheMac3.chr2                 C 0 M 1044
s macFas5.chr2                  61012434 170 - 192460366 AAATGTTTCATAGAT---------GTTTTTTAGCAAAAACAAATGATTTGCATGTTTCCACCAAAAGGGAATAACACTCTTAATATGGAATATCCCTTTGGTCTCCTTTTTGGAAACAAAATTCATAACCACCTGCCATTTGATGAAATCTAATAAATTCTTAATATAGAATACACTCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59572308 170 + 187378091 aaatgtttaataGAT---------GTTTTTTAGCAAAAACAAATGATTTGCATGTTTCCACCAAAAGGGAATAACACTCTTAATATGGAATATCCCTTTGGTCTCCGTTTTGGAAACAAAATTCATAACCACCTGCCATTTGATGAAATCTAATAAATTCTTAATATAGAATACACTCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64508143 170 - 101219884 AAATGTTTCATAGAT---------GTTTTTTAGCAAAAACAAATGATTTGCATGTTTCCACCAAAAGGGAATAACACTCTTAATATGGAATATCCCTCTGGTCTCCTTTTTGGAAACAAAATTCATAACCACCTGCCATTTGATGAAATCTAATAAATTCTTAATATAGAATACACTCC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46069871 170 -  98464013 AAATGTTTCATAGGT---------GTTTTTTAGCAAAAGAAAATAATTTGCATGTTTCCACCAAAAGGGAATAAAACCTTTACTATGGAATATCCCTCAGGTCTCCTTTTTGGAAACAAAATTCATAACCAGCTGCCATTTGATGAAATCTAATAAATTCCTAATATAGCTTATACTTC
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45789421 169 - 149736546 AAAGGCTTCATAGAT---------GTTTTTCAGCAAAAACAAATAATTTGCATTTTTGTACCAAAGGGGAATAAAACCTTTAATATGTAATGTCCCTCAGGTCTCCTTTTTGGAAATGAAATTCATAACCACCTGCCATTTGATGAAG-CTAGTAAATTCCTGATATAGTATACACTTC
i mm10.chr6                    I 3 C 0
s canFam3.chr20                 16616192 166 +  58134056 AAATGTTTCATAGAT---------GTTTTTTAGCAAAAGCAAATGATTTGCATGTTTCTACCAAAAGGGAATAAAGCCTTTAATATGGAGTATCCCTCAGGTCTCCTTTTTGGAAACAAAATTCATAACCACCTGCCATTTGACGAAATCT----AATTGCTAATACAGCGTACACTTC
i canFam3.chr20                C 0 C 0
e nasLar1.chr2                  57743469 635 + 181502896 I
e saiBol1.JH378290               2554596 1006 -   2763108 I

a score=413529.000000
s hg38.chr14_KI270725v1_random     20272 152 +    172810 TCCAAAGTGTTCATTG-----TTCAAAGAAACTCAA--GTGAAAATA-----AGGTATGAAATCCTCATGTGCACAGAGAGATAAAGATAAATGCAGCA--TTTTTAAAATATCTGTTTTTTTCTAGTACAAAGAAAACATATCGGAAATATTAAAGTGAGCATAA
s panTro4.chr3                 201692415 152 - 202329955 TCCAAAGTGTTCATTG-----TTCAAAGAAACTCAA--GTGAAAATA-----AGGTATGAAATCCTCATGTGCACAGAGAGATAAAGATAAATGCAGCA--TTTTTAAAATATCTGTTTTTTTCTAGTACAAAGAAAACATATCGGAAATATTAAAGTGAGCATAA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69671882 152 + 202140232 TCCAAAGTATTTATTG-----TTCAAAGAAACTCAA--GTGAAAATA-----AGGTATGAAATCCTCATATGCACAGAGAGATAAAGATAAATGCAGCA--TTTTTAAAATATCTGTTTTTTTCTAGTACAAAGAAAACATATCAGAAATATTAAAGTGAGCATAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67599504 151 +  86207423 TCCAACGTGTTCATTG-----TTCAAAGAAACTCAA--GTGAAAATA-----AGGTATGAAATCCTCATATGCACAGAGAGATAAAGATAAATGCGGCA--TTTTTAAAATATCC-TTTTTTTCTAGTACAAAGAAAACATATCAGAAATTTTAAAGTGAGTATAA
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61012604 150 - 192460366 TCCAAAGTGTGCATTG-----TCCAAAGAAACTAAA--GTGAAAATA-----AGGTATTAAATCCTCATATGCACAGAGAGATAAAGATAAATGCAGCA--TTTTTAAAATATCT--TTTTTTCTAGTACAAAGAAAACATATCAGAAATATTAAAGTGAGCATAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59572478 150 + 187378091 TCCAAAGTGTGCATTG-----TCCAAAGAAACTAAA--GTGAAAATA-----AGGTATTAAATCCTCATATGCACAGAGAGATAAAGATAaatgtagca--ttttaaaaatatcc--ttttttctagTACAAAGAAAACATATCAGAAATATTAAAGTGAGCATAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64508313 149 - 101219884 TCCAAAGTGTTCATTG-----TCCAAAGAAACTAAA--GTGAAAATA-----AGGTATTAAATCCTCATATGCACAGAGAGATAAAGATAAATGCAGCA--TTTTTAAAATATC---TTTTTTCTAGTACAAAGAAAACATATCAGAAATATTAAAGTGAGCATAA
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46070041 152 -  98464013 TCCAAAGTGTTCATTG-----TTCAAAGAAACTAAA--GTGAAAATA-----AGGTATGCAATCCTCATATGCACAGAGAGATAAAGATAAGTGCAGCA--TGTTTTAAATATCTGGTTTCTTCTAGTACAAGGGAAACATATCAAATATATTAAAATGAGCATAA
i calJac3.chr15                C 0 C 0
s mm10.chr6                     45789590 155 - 149736546 TCCAAAGTATTTGCTGGCATTTTCAAAACAGCTAAT--CAAAAAGTAAGTGTAGACGTAGGAGTCTCACA-GTCCAGAGGG--AAGAATAAATGCAATA--TGCTTTAAATGAATGGTTGT---CAGTA-ACAGAAAATGTACCTGGAATATTAATGTATAAATAA
i mm10.chr6                    C 0 N 0
s canFam3.chr20                 16616358 162 +  58134056 TGCAAAGTGTTCACTGGCATTTTCaaaaaaaaaaaattttaaaaataGAG--AGGCATGCTAGCCTCATCTACACAGAAAGAGAATGACAAATGTAGCATGTTTTTGGTGTATGTGTTTTTTCCTATTAGAAACAAAACATACCAGAAATAT--AAGTGAGCATGA
i canFam3.chr20                C 0 C 0
e nasLar1.chr2                  57743469 635 + 181502896 I
e rheMac3.chr2                  61856644 1044 + 192599291 M
e saiBol1.JH378290               2554596 1006 -   2763108 I

a score=499242.000000
s hg38.chr14_KI270725v1_random     20424 187 +    172810 TTTCATCCCACAGCAATAGTTTCAACTATACTTTAATTCTACCAGGTAGACTCACACATTTCCTT-AATGGGTGTAAAATTTATTAACAACATTTTAGTTCTGTTTTTCTTAGAGAATATGCATAAACCCTGTGTTTTGATTCATGTCATTTTATTCCTATTATTTATCCAAAGGGTAATTAAAATTT
s panTro4.chr3                 201692567 187 - 202329955 TTTCATCCCACAGCAATAGTTTCAACTATACTTTAATACTACCAGGTAGACTCATACACTTCCTT-AATGGGTGTAAAATTTATTAACAACATTTTAGTTCTGTTTTTCATAGAGAATATGCATAAACCGTGTGTTTTGATTCATGCCATTTTATTCCTATTATTTATGCAAAGGGTAATTAAAATTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672034 187 + 202140232 TTTCATCCCACAGCAATAGTTTCAACTATACTTTAATTCTACCAGGTAGACTCACACACTTCCTT-AATGGGTGTAAAATTTATTAACAACCTTTCAGTTCTGTTTTTCATAGAGAATATACATAAACCCTGTGTTTTGATTCATGCCATTTTATTCCGATTATTTATCCAAAGGGTAATTAAAATTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67599655 187 +  86207423 TTTCATCCCACAGCAATAGTTTCAACTATACTTTAATTCTACCAGGTAGACTCACACACTTCCTT-AATGGGTGTAAAATTTATTAACAACCTTTTAGTTCTGTTTTTCATAGAGAATATGCATAAACCCTGTGTTTTGATTCATGCCATTTTATTCCTATTATTTACCCAAAGGGTAATTAAAATTT
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61012754 187 - 192460366 TTTCATCCCACAGCAACAGTTTCAACTATACTTTAATTCTACCTGGTAGACTCAGACACTTCTTT-AATGGGTGTAAACTTTATTAACAACCATTTAGTTCTGTTTTTCATAGAGAATATGCATAAATCCTGTGTTTTGATTCATGCCATTTTATTCCTATTATTTATCCAAAGTATAATTAAAATTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59572628 187 + 187378091 TTTCATCCCACAGCAATAGTTTCAACTATACTTTAATTCTACCTGGCAGACTCAGACACTTCCTT-AATGGGTGTAAACTTTATTAACAACCATTTACTTCTGTTTTTCATAGAGAATATGCATAAATCCTGTGTTTTGATTCATGCCATTTTATTCCTATTATTTATccaaagtataattaaaattt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64508462 187 - 101219884 TTTCATCCTACAGCAATAGTTTCAACTATACTTTAATTCTACCTGGTAGACTCAGACACTTCCTT-AATGGGTGTAAACTTTATTAACAACCATTTAGTTCTGTTTTTCATAGAGAATATGCATAAATCCTGTGTTTTGATTCATGCCATTTTATTCCTATTATTTATCCAAAGTATAATTAAAATTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46070193 187 -  98464013 TTTCATCCCACAGTAATAGTTTCAACTATACTTTAATTCTACCAGGTAGACACAGGCACTTCCTTAAATGGGGGTAAACTTTATTAATAAC-TTTTAGTTCTGTTTTTCATTGAGAATATGCATAAATCCTATGCTTTGACTCATGCCATTTTATTCCTATTATTTATCCAAAGTGTAATGAAAATTT
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16616520 173 +  58134056 TTTCTTCCCTCAGTAATAGCTTTAACTA-----------AACCAGACAGATTCA---ATTTTTTA-AATGGGTGTCAACTCTATTCATAACCTTTCAGTTTGGTTTTTCACAAGGAATATGCATAAATACTGCACTTTGTCTCATGCTGTGTTATTCTTATTATTTATACTATGCATAATTAAAATTT
i canFam3.chr20                C 0 I 206
e nasLar1.chr2                  57743469 635 + 181502896 I
e rheMac3.chr2                  61856644 1044 + 192599291 M
e saiBol1.JH378290               2554596 1006 -   2763108 I

a score=339455.000000
s hg38.chr14_KI270725v1_random     20611 125 +    172810 CTTTTTTGATGATGTAGATGGAATATGAAAATAGAAGGGAGGTTATTGACCCATTAAATAGTTAAATGAAAATCACCTTCACAGATGTTTGGTGGAGAAAAATATGCTATGCATAGAAAAGCTGA
s panTro4.chr3                 201692754 125 - 202329955 CTTTTTTGATGATGTAGATGGAATATGAAAATAGAAGGGAGGTTATTGACCCATTAAATAGTTAAATGAAAATCACCTTCACAGATGTTTGGTGGAGAAAAATATGCTATGCATAGAAAAGCTGA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672221 124 + 202140232 CTTTTTTGATGATGTAGATGGAATATGAAAATA-AAGGGAGGTTATTGACCCATTAAATAGTTAAATGAAAATCACCTTCACAGATGTTTGGTGGAGAAAAATATGCTGTGCATAGAAAAGCTGA
i ponAbe2.chr3                 C 0 I 3
s nomLeu3.chr21                 67599842 125 +  86207423 CTTTTTTGATGATGTAGATGGAATATGAAAATAGAAGGGAGGTTATTGACCCATTAAGTAGTTAAATGAAAATCACCTTCACAGATGTTTGGTGGAGAAAAATATGCTATGCATAGGAAAGCTGA
i nomLeu3.chr21                C 0 I 3
s macFas5.chr2                  61012941 125 - 192460366 CTTTTTTGATGATGTAGATGGAATACGAAAATAGAAGGGAGGCTATTGATGCATTAAATAGTTAAATGAAAATCACCTTCACAGATGTTTGGTAGAGAAAAATATTCTATGCATAGAAAAGCTGA
i macFas5.chr2                 C 0 I 3
s papAnu2.chr2                  59572815 125 + 187378091 cttttttgatgaTGTAGATGGAATACGAAAATAGAAGGGAGGTTATTGATGCATTAAATAGTTAAATGAAAATCACCTTCAGAGATGTTTGGTAGAGAAAAATATGCTATGCATAGAAaagctga
i papAnu2.chr2                 C 0 I 3
s chlSab2.chr22                 64508649 125 - 101219884 CTTTTTTGATGATGTAGATGGAATATGAAAATAGAAGGGAGGTTATTGATGCATTAAATAGTTAAATGAAAATCACCTTCACAGATGTTTGGTGGAGAAAAATATGCTATGCATAGAAAAGCTGA
i chlSab2.chr22                C 0 I 3
s calJac3.chr15                 46070380 124 -  98464013 CTCTTTTGATTATGTAGATGGAATATGGAAATATAAGGGAGGCTATTGACTCATTAAATGGTTAAATGAAAATC-TCTTCACAGATGTTTGGTGGAGAAAAATATGCTATGCGAAACACAGCTGA
i calJac3.chr15                C 0 I 3
s canFam3.chr20                 16616899 123 +  58134056 CTTTCCTGATAACATAGGCTGAATTTTGCAATAGAAGGGAGGTTACTGACTCATT-AGTGGTTAAATAAAGACCACCTAAAAAGGTGTTTGGGAGAGAAAAAC-TGCCACGCCCAGAAAAGCTGA
i canFam3.chr20                I 206 C 0
e nasLar1.chr2                  57743469 635 + 181502896 I
e rheMac3.chr2                  61856644 1044 + 192599291 M
e saiBol1.JH378290               2554596 1006 -   2763108 I

a score=11187.000000
s hg38.chr14_KI270725v1_random     20736 3 +    172810 AAT
s panTro4.chr3                 201692879 3 - 202329955 AAT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672348 3 + 202140232 AAT
i ponAbe2.chr3                 I 3 C 0
s nomLeu3.chr21                 67599970 3 +  86207423 AAC
i nomLeu3.chr21                I 3 C 0
s macFas5.chr2                  61013069 3 - 192460366 AAT
i macFas5.chr2                 I 3 C 0
s papAnu2.chr2                  59572943 3 + 187378091 aat
i papAnu2.chr2                 I 3 C 0
s chlSab2.chr22                 64508777 3 - 101219884 AAT
i chlSab2.chr22                I 3 C 0
s nasLar1.chr2                  57744104 3 + 181502896 AAT
i nasLar1.chr2                 I 635 I 386
s calJac3.chr15                 46070507 3 -  98464013 AAT
i calJac3.chr15                I 3 C 0
s canFam3.chr20                 16617022 3 +  58134056 AAT
i canFam3.chr20                C 0 C 0
e rheMac3.chr2                  61856644 1044 + 192599291 M
e saiBol1.JH378290               2554596 1006 -   2763108 I

a score=835799.000000
s hg38.chr14_KI270725v1_random     20739 354 +    172810 -----GTTTTTCCACAAATGTTAGGCATTGGGCTGAAATTACAATAGCCTTTCATGTCCAGTTTTGTTACAATTCCATTAAGGCAACTGCAGAGATTGGTAAATAG--CTGTTAAGataggagagtcaccatatgtaatatagtttgtgctagtcattgtgtaagcattttatatacattctctcattgacacatttaacagcctgtgaagttcctattttattcccacctcacatactgagaaactacagctcagagaaacaaagtaaACTGGGTTCCTACTTGAACCTAGTTTTTATGTACTATGCATGGTTTCATATGTTTACTGa-------------------------------tatacata-tataaa---------attttatttat--atata--------at
s panTro4.chr3                 201692882 354 - 202329955 -----GTTTTTCCACGAATGTTAGGCATTGGGCTGAAATTACAATAGCTTTTCATGTCCAGTTTTGTTACAATTCCATTAAGGCAACTGCAGAGATTGGTAAATAG--CTGTTACCataggagagtcaccatatgtaatacagtttgtgctagtcattgtgtaagcattttatatacattctctcattgacacatttaacagcctgtgaagttcctattttattcccacctcacatattgagaaactacagctcagaaaaacaaagtaaACTGAGTTCCTACTTGAACCTAGTTTTTATGTACTATGCATGGTTTCatatgtttactga-------------------------------tatacata-tataaa---------attttatttat--atata--------at
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672351 356 + 202140232 -----GTTTTTCCACAAATATTAGGCATTGAGCTGAAATTACAATAGGCTTTCATGTCCAGTTTTGTTATAATTCCATTAAGGCAACTGCAGAGATTGGTAAATAG--CTGTTACTatagaagagtcaccatatgtaatatagtttgtgctagacattgtgtaagcattttatatacattctctcattgacacatttaacagcctgtgaggttcctattttattcccacctcacatattgagaaactacagctcagagaaacaaagtaaACTGAGTTCTTACTTGAACCTAGTTTTTATGTCCTATGCATGGGTTCatatgtttactga-------------------------------tatacata-tataaa---------attttatttatacatata--------at
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67599973 309 +  86207423 -----GTTTTTCCACGAATATTAGGCATTGGGCTGAAATTACAATAGCCTTTCATGTCCAGTTTTGTTATAATCCCATTAAGGCAACTGCAGAGATTGGTAAATAG--CTGTTACCataggagagtcaccatatgtaatatagtttgtgctagacattgtgtaagcattttatatacattctctcattgacatatttaacagcctgtgaagttcctattttattcccacctcacatattgagaaactacagctcagagaaacaaagtaaACTGAGTTCTTACTTGAACCTAGTTTTTATGTCCTATGCATGGGTTC------------------------------------------------------------------------------------------------
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61013072 361 - 192460366 -----ATTTTTCCATGAATATTGGGCATTGGGCTGAAATTACAATAGCCTTTCACGTCCAGTTTTATTACAATTCCATTAAGGCAACTGCAGAGATTGGTAAATAA--CTGTTACCATAGGAAAGTCACCATATGTAATAtagtttatgctagacattgtgtaagcattttacatacattcactcattgacacatttaacagcctgtgaagttcctgttttattcccatctcacatattgagaaactatagttcagagaaacaaagtaaACTGAGCTCCTA-TTGAACCTAGTTTTTATGTCCTATGCATGGGCTCATATGTTTACTGa-------------------------------tatacata-tataac---------gttttattcat--atatatataaagtat
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59572946 361 + 187378091 -----atttttccatgAATATTGGGCACTGGGCCGAAATTACAATAGCCTTTCACGTCCAGTTTTATTACAGTTCCATTAAGGCAACTGCAGAGATTGGTAAATAA--CTGTTACCATAGGAAAGTCACCATATGTAATATAGTTTATGCTAGACATTGTGtaagcattttatatacattcaCTCATTGACACATTTAACAGCCTGTGAAGTTCCTGTTTTATTCCCATCTCACATATTGAGAAACTATAGTTCAGAGAAACAAAGTAAACTGAGCTCCTA-TTGAACCTAGTTTTTATGTCCTATGCATGGGCTCATATGTTTactga-------------------------------tatacata-tataat---------gttttattcat--atatatataaagtat
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64508780 354 - 101219884 -----ATTTTTCCATGAATATTGGGCCTTGGGCTGAAATTACAATAGCCTTTCACGTCCAGTTTTATTACAATTCCATTAAGGCAACTGCAGAGATTGGTAAATAA--CTGTTACCataggagagtcaccatatgtaatatagtttatgctagacattgtgtaagcattttacatacattcactcattgacacatttaacatcctgtgaagttcctgttttattcccatctcacatattgagaaactatagttcagagaaacaaagtaaACTGAGCTCCTA-TTGAACCTAGTTTTTATGTCCTATGCATGGGCTCATATGTTTACTGa-------------------------------tatacata-tataac---------gttttattcac--atata-------tat
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46070510 399 -  98464013 -----GTTTTCCCATGAATATTTGGCACTGGGCTGAAATTACAATAGCCTGTCACGT-CAGTTTTGTTATAATTCCATTAAGGTAACTACAGAGATTGGTAAATAA--CTGTTACAACAGGagagtcaccatatgtaatataatttgttctagacattgtgtaagaattttatatacattctctcattgactcattt-acagcctgtgaagtg-ttattttgttcccacctcacatatcgagaaaatacagctcagagaaactaagtaaACTGAGTTCCTACTTGAACTTAGTTTTTATATCCTATGCAGGGGCTCATATGTTTACTGATGTGTGTGTGTGtatatatatatgtatttattatatgta-tatatatttatttttattttatttat--atatatacataaaat
i calJac3.chr15                C 0 I 3
s canFam3.chr20                 16617025 337 +  58134056 AATGGTTATTTCCATAAATATTGAATATTGAACTGAAATAACATCAGCCTTTTATGTCCAGTTCTGCTACCCTCCCATTATGGCAACTGCAGAGGTTAGTAAATGGTTCTGTTTCTataggaaagtgaccatgtttgatatgctttatgctagaccttgtgtaaacattttaaatacattatctcactt-ctcttttaacagtctgtgaggtttataatttattcccatttcacaagtggagaaactaaaactaagaagaactgaataaTCAGGGTTCATATTTGAACCCTGTTTT--TGATCTATTCTTAGACTCATGCTTCAATGGA-------------------------------CATATATAGTA-----------------------------------------
i canFam3.chr20                C 0 C 0
e nasLar1.chr2                  57744107 386 + 181502896 I
e rheMac3.chr2                  61856644 1044 + 192599291 M
e saiBol1.JH378290               2554596 1006 -   2763108 I

a score=9670.000000
s hg38.chr14_KI270725v1_random     21093 4 +    172810 atat
s panTro4.chr3                 201693236 4 - 202329955 atat
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672707 4 + 202140232 atat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67600282 2 +  86207423 --AT
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61013433 4 - 192460366 atat
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59573307 4 + 187378091 atat
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64509134 4 - 101219884 atat
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46070912 4 -  98464013 atat
i calJac3.chr15                I 3 I 48
s saiBol1.JH378290               2555602 4 -   2763108 ttat
i saiBol1.JH378290             I 1006 I 218
e nasLar1.chr2                  57744107 386 + 181502896 I
e canFam3.chr20                 16617362 0 +  58134056 C
e rheMac3.chr2                  61856644 1044 + 192599291 M

a score=3276.000000
s hg38.chr14_KI270725v1_random     21097 1 +    172810 t
s panTro4.chr3                 201693240 1 - 202329955 t
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672711 1 + 202140232 t
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67600284 1 +  86207423 T
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61013437 1 - 192460366 t
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59573311 1 + 187378091 t
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64509138 1 - 101219884 t
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46070964 1 -  98464013 t
i calJac3.chr15                I 48 C 0
s saiBol1.JH378290               2555824 1 -   2763108 t
i saiBol1.JH378290             I 218 I 297
e nasLar1.chr2                  57744107 386 + 181502896 I
e canFam3.chr20                 16617362 0 +  58134056 C
e rheMac3.chr2                  61856644 1044 + 192599291 M

a score=39832.000000
s hg38.chr14_KI270725v1_random     21098 16 +    172810 atatatataAAATAAA
s panTro4.chr3                 201693241 16 - 202329955 atatatataAAATAAA
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672712 16 + 202140232 atatatataAAATAAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67600285 16 +  86207423 ATATATATAAAATAAA
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61013438 16 - 192460366 atatatataAAATAAA
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                  59573312 16 + 187378091 atatatataaaataaa
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr22                 64509139 16 - 101219884 atatatataAAATAAA
i chlSab2.chr22                C 0 I 1
s calJac3.chr15                 46070965 16 -  98464013 atatatataAAATAAA
i calJac3.chr15                C 0 I 1
s canFam3.chr20                 16617362  3 +  58134056 -------------AAA
i canFam3.chr20                C 0 C 0
e nasLar1.chr2                  57744107 386 + 181502896 I
e rheMac3.chr2                  61856644 1044 + 192599291 M
e saiBol1.JH378290               2555825 297 -   2763108 I

a score=4500.000000
s hg38.chr14_KI270725v1_random     21114 1 +    172810 C
s panTro4.chr3                 201693257 1 - 202329955 C
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672728 1 + 202140232 C
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67600301 1 +  86207423 C
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61013455 1 - 192460366 C
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                  59573329 1 + 187378091 c
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr22                 64509156 1 - 101219884 C
i chlSab2.chr22                I 1 C 0
s nasLar1.chr2                  57744493 1 + 181502896 C
i nasLar1.chr2                 I 386 N 0
s calJac3.chr15                 46070982 1 -  98464013 C
i calJac3.chr15                I 1 C 0
s canFam3.chr20                 16617365 1 +  58134056 C
i canFam3.chr20                C 0 C 0
e rheMac3.chr2                  61856644 1044 + 192599291 M
e saiBol1.JH378290               2555825 297 -   2763108 I

a score=763552.000000
s hg38.chr14_KI270725v1_random     21115 281 +    172810 CATAAAGTCAGAAATTTAGAATGAAATTTAATATGACTATAATTTATTTGCTGATTCCAAGATAGGCATCTATATTTTCCCAACATTAAAATAAAGATCATCTGGACAATCTTCTAACCAACTCCGAACAGTTCTTTCTGGAGTTTTTCTCCTTTTATTTCTCCTACTTGGAGT---TGTAGGAGAAATCTGTGTCTCAGAGAAATAAACAAAAGGTGTTCT-----------------ATTTTAAAATAAAAAGACAGAAATTAGCAGCTTGGACATTTCACAAAAGAAGCTAATTAATT
s panTro4.chr3                 201693258 281 - 202329955 CGTAAAGTCAGAAATTTAGAATGAAATTTAATATGAGTATAATTTATTTGCTGATTCCAAGATAGGCATCTATATTTTCCCAACATTAAAATAAAGATCGTCTGGACAATCTTCTAACCAACTCCAAACAGTTCTTTCGGGAGTTTTTCTCCTTTTATTTCTCCTACTTGGAGT---TGTAGGAGAAATCTGTGTCTCAGAGAAATAAACAAAAGGTGTTCT-----------------ATTTTGAAATAAAAGGACAGAAATTAGCAGCTTGGACATTTCACAAAAGAAGCTAATTAATT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69672729 281 + 202140232 CCTAAAGTCAGAAATTTAGAATGAAATTTAATATGAGTATAATTTATTTGCTGATTCCAAGATAGGCATCTATATTTTCCCAACATTAAAATAAAGATCATCTGGACAATCTTCTAACCAACTCCAAACAGTTCTTTCTGGAGTTTTTCTCCTTTTATTTCTCCTACTTGGAGT---TGTAGGAGAAATCTGTGTCTCAGAGAAATAAACAAAAGGTGTTCT-----------------ATTTTAAAATAAAAGGACAGAAATTAGCAGCTTGGACATTTCACAAAAGAAGCTAATTAGTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67600302 281 +  86207423 CCTAAAGTCAGAAATTTAGAATGAAATTTAATATGAGTATAATTTATTTGCTGATTCCAAGATAGGCATCTATATTTTCCCAACATTAAAATAAAGATCATCTGGACAATCTTCTAACCAACTCCAAACAGTTCTTTCTGGAGTTTTTCTCCTTTTATTTCTTCTACTTGGAGC---TGTAGGAGAAATCTGTGTCTCAGAGAAATAAACAAAAGGTGTTCT-----------------ATTTTAAAATAAAAGGACAGAAATTAGCAGCTTGGACATTTCACAAAAAAAGCTAATTAGTT
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61013456 280 - 192460366 CCTAAAGTCAGAAATTTAGAATGCAATTTAATATGAGTATAATTTATTTGTTGATTCCAAGATAGGCATCTATATTTTCCCAACATTAAAATAAAGATCATCTGGACAATCTTCTAACCAACTCCAAACAGTTCTTTCTGGAGTTTTTCTCCTTTTATTTCTCCTACTTGGAGT---TGTAGGTG-TGTCTGTGTCTCAGAGAAATAAACAAAAGGTGTTCT-----------------ATTTTAAAATAAAAGGACAGAAATGAGCAGCTTGGAGAGTTCACAAAAGAAGCTAATTAGTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59573330 280 + 187378091 cCTAAAGTCAGAAATTTAGAATGCAATTTAATATGAGtataatttatttgttgattCCAAGATAGGCATCTATATTTTCCCAACATTAAAATAAAGATCATCTGGACAATCTTCTAACCAACTCCAAACAGTTCTTTCTggagtttttctccttttatttctcctaCTTGGAGT---TGTAGGTG-TGTCTGTGTctcagagaaataaacaaaaggtgttct-----------------attttaaaataaaaggacagaAATGAGCAGCTTGGAGAGTTCACAAAAGAAGCTAATTAGTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64509157 280 - 101219884 CCTAAAGTCAGAAATTTAGAATGTAATTTAATATGAGTATAATTTATTTGTTGATTCCAAGATAGGCATCTATATTTTCCCAACATTAAAATAAAGATCATCTGGACAATCTTCTAACCAACTCCAAACAGTTCTTTCTGGAGTTTTTCTCCTTTTATTTCTCCTACTTGGAGT---TGTAGGTG-TGTCTGTGTCTCACAGAAATAAACAAAAGGTGTTCT-----------------ATTTTAAAATAAAAGGACAGAAATGAGCAGCTTGGAGAGTTCACAAAAGAAGCTAATTAGTT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46070983 280 -  98464013 CCTAAAGTCAGACATTTAGAATGAAATTTAACATGAGTACAATTTATTTGCTGATTCCAAGATAGCCATCTATATTTTCCCAACATTAAAATAAAGACCATTGGGACAATCTTCTAACCAACTCAAAACAGTTCTTTCTGAAGTTTTTCTCCTTTTATTTCTCCTACTTGAAGT---TGTAGGTG-CTTCTGTGTCTCATAGAAATAAACAAAAGGTGTTCT-----------------ATTTCAAAATAAAAGGACAAAAATGAACAGCTTGGAGATTTCACAAAAGAAGCTAATTAGTT
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16617366 289 +  58134056 TCTAACGTGAGAAAATCGGAAT----TTTATCATAAGCATAATTTATTTGCTGATTTCAAAATAGGCATCTGTATTTTTCCATCATTATGAT----TCCATCCAGAT-ATTTTACAACCAGCTCCAAAAGGTGGTTTCTGGAGTTTTTCTCCTTATATTTCTCCCACATGGTCTTAATGTAGTTG-TTTCTGTGTTT--GACAAATAAACAAAAAGTTTTTTTTTTGTTGTTGTTGTTAATCTCCAAATAAAAGGAAAGATGTGACCAGCTTGGGGGGGTCCACAAAAAAGCTAATTAGTT
i canFam3.chr20                C 0 C 0
e rheMac3.chr2                  61856644 1044 + 192599291 M
e saiBol1.JH378290               2555825 297 -   2763108 I

a score=6669.000000
s hg38.chr14_KI270725v1_random     21396 2 +    172810 AC
s panTro4.chr3                 201693539 2 - 202329955 AC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69673010 2 + 202140232 AC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67600583 2 +  86207423 AC
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61013736 2 - 192460366 AC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59573610 2 + 187378091 AC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64509437 2 - 101219884 AC
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46071263 2 -  98464013 AC
i calJac3.chr15                C 0 C 0
s saiBol1.JH378290               2556122 2 -   2763108 AC
i saiBol1.JH378290             I 297 N 0
s canFam3.chr20                 16617655 2 +  58134056 TC
i canFam3.chr20                C 0 C 0
e rheMac3.chr2                  61856644 1044 + 192599291 M

a score=77449.000000
s hg38.chr14_KI270725v1_random     21398 32 +    172810 CAAGCTAACTGGAGGTTTCCTCCATTCATGGG
s panTro4.chr3                 201693541 32 - 202329955 AAAGCTAACTGGAGGTTTCCTCCATTGATGGG
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69673012 32 + 202140232 CAAGTTAACTGGGGGTTTCCTCCATTCATGGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67600585 32 +  86207423 CAAGCTAACTGGAGGTTTCCTCCATTCATGGG
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61013738 32 - 192460366 CAAGCTAACTGGAGGTTTCGTCCATTCATGTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59573612 32 + 187378091 CAAGCTAACTGGAGGTTTCGTCCATTCATGTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64509439 32 - 101219884 CAAGCTAAGTGGAGGTTTCGTTCATTCTTGGG
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46071265 32 -  98464013 CAAGCTAACTGGAGGTTTCCTGCATTCCTGGG
i calJac3.chr15                C 0 C 0
s canFam3.chr20                 16617657 32 +  58134056 AGAGCAAAATGGAAGTTTGCTATATTCATGAA
i canFam3.chr20                C 0 C 0
e rheMac3.chr2                  61856644 1044 + 192599291 M

a score=1856869.000000
s hg38.chr14_KI270725v1_random     21430 528 +    172810 CATACTGGAATTGCAAAATCTAGTTGTGAGCATAGAATAATATCTATAAAAAGTCTTTAAGATAGCATGAAAAACATAGC-ATAATATCAGTAACAAAT--ATTTTATAATGTCTAAAATTTTATAACTTCTTTTGTCTAT-TTTCTTAAAACTCCCTTATGCCATAATTTGGCTGTAT---TTATGTGATAAACACACTCTTATCTTTGTAATGAATTTTTAAGGAAAAGACAGAACCATGTAAAATATGCTTTTGAAAAATGGGCACATTATGCA-TGTGAATGCTCTCTCTCTACTAATTAATGTAATGTGGCAGTATCCAACAAACCAGAGCAGATGGGGCTCTAAG--TTGTACCAGCCTGTGCCGTTCTTAGGGGGAACAATTTTTGTTCACATCTCTAAATAAAGAGAGTGAGATTTTGGGAAGGATAGTATAATTTAACAAACAGCAGAGAGTGTGACCATTCAGACTGCTTTTTCCTGTCAACCACTTG-AATGCAAAAC----CTGTTTCAGAGATGA-AGCAATAGAAAGTGT
s panTro4.chr3                 201693573 528 - 202329955 CATGCTGGAATTGCAAAATCTAGTTGTGAGCATAGAATAATATCTATAAAAAGTCTTTAAGATAGCATGAAAAACATAGC-ATAATATCAGTAACAAAT--ATTTTATAACATCTAAAATTTTATAACTTCTTTTGTCTAT-TTTCTTAAAGCTCCCTTATGCCATAATTTGGCTGTAT---TTATGTGATAAACACACTCTTATCTTTGTAATGAATTTTTAAGGAAAAGACAGAACCATGTAAAATATGCTTTTGAAAAATGGGCACATTATGCA-TGTGAATGCTCTCTCTCTACTAATTAATGTAATGTGGCAGTATCCAACAAACCAGAGCAGATGGGGCTCTAAG--TTGTACCAGCCTGTGCCGTTCTTAGGGGGAACAATTTTTGTTCACATCTCTAAATAAAGAGAGTGAGATTTTGGGAAGGATAGTATAATTTAACAAACAACAGAGAGTGTGACCATTCAGACTGCTTTTTCCTGTCAACCACTTG-AATGCAAAAC----CTGTTTCAGAGAtga-agcaatagaaagtgt
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69673044 528 + 202140232 CATACTGCAATTGCAAAATCTAGTTGTGAGCATAGAATAATATCTATAAAAAGTCTTTAAGATAGCATGAAAAACATAGC-ATAATATCAGTAACAAAT--ATTTTATAATGTCTAAAA-TTTGTAACTTCTTTTGTCTAT-CTTCTTAAAGCTCCCTTATGCCATAGTTTGGCTGTAT---TTATGTGATAAACACACTCTTAGCTTTGCAATGAATTTTTAAGGAAAAGACAGAACCATGTAAAATATGCTTTTGAAAAATAGGCACATTATGCA-TGTGAATGCTCTCTCTCTACTAATTAATGTAATGTGGCAGTATCCAAAAAACCAGAGCAGATGGTGCCCTAAGTCTTGTACCAGCCTGTGCCATTCTTAAGGGGAACAATTTTTGTTCACATCTCTAAATAA--AGAGTGAAATTTTGGGAAGGATGGTATAATGTAACAAACAACAGAGAGTGTGACCATTCAGACTGCTTTTTCCTATCAACCACTTGCAATGCAAAAC----CTGTTTCAGAGAtga-agcaatagaaagtgt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67600617 531 +  86207423 CATACTGGAATTGCAAAATCTAGTTGTGAGCATAGAGTAATATCTATAAAAAGTCTTTAAGATAGCATGAAAAACATAGC-ATAATATCACTAACAAAT--ATTTTATAATGTCTAAAATTTTATAACTTCTTTTGTCTAT-TTTCTTAAAGCTCCTTTATGCCATAATTTGGCTGTAT---TTATGTGATAAACACACTCTTATCTTTGTAATGAATTTTTAAGGAAAAAACAGAACCATGTAAAATATGCTTTTGAAAAATGGGCACATTATGCA-TGTGAATGCTTGCTCTCTACTAATTAACGTAATGTGGCAGTATCCAACAAACCAGAGCAGATGGGGCTCTAAGTCTTGTACCAGCCTGTGCCATTCTTAAGGGGAACAATTTTTGTTCACATCTCTAAATAAAGAGAGTGAGATTTTGGGAAGGATGGTATAATTTAACAAACAACAGACAGTGTGACCATTCAGACTGCTTTTTCCTATCAACCACTTGCAATGCAAAAC----CTTTTTCAGAGATGA-AGCAATAGAAAGTGT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61857688 531 + 192599291 CATACTGGAATTGCAAAATCTCGTTATGAGCATAGAATAATATCTATAAAAAGTCTTTAAGACAGCATGAAAAACATAGC-ATAATACCAGTAACAAAT--ATTTTATAATCTCTAAAATTTTATAACTTCTTTTGTCTAT-TTTCTTAAAGCTCCCTTATGCCATAATTTGGCTGTAT---TTATGTGATAAACACACTCTTATCTTTGTAATGAATTTTTAAGGAAAAGACAGAACCATGTAAAATATGTTTTTGAAAAATGGGCACATTATGCA-TGTGAATGCTCTCTCTCTACTAATTAATGTAATGTGGCAGTATCCAACAAACTAGAGCAGATGGGGCTCTAAGTCTTGTACCAGCCTATGCCGTTCTTAAGGGGAACAATTTTTCTTCACATCTCTAAATAAAGAGAGTGAGATTTCGGGAAGGATGGCATAATTTAACAAACAACAGAGAGTGTGACCATTCAGATTGCCTTTTCCTATCAACCACTTGCAAGGCAGAAC----CTGTTTCAGAGATGA-AGCAATAGAAAGTGT
i rheMac3.chr2                 M 1044 C 0
s macFas5.chr2                  61013770 531 - 192460366 CATACTGGAATTGCAAAATCTCGTTATGAGCATAGAATAATATCTATAAAAAGTCTTTAAGACAGCATGAAAAACATAGC-ATAATACCAGTAACAAAT--ATTTTATAATCTCTAAAATTTTATAACTTCTTTTGTCTAT-TTTCTTAAAGCTCCCTTATGCCATAATTTGGCTGTAT---TTATGTGATAAACACACTCTTATCTTTGTAATGAATTTTTAAGGAAAAGACAGAACCATGTAAAATATGTTTTTGAAAAATGGGCACATTATGCA-TGTGAATGCTCTCTCTCTACTAATTAATGTAATGTGGCAGTATCCAACAAACTAGAGCAGATGGGGCTCTAAGTCTTGTACCAGCCTATGCCGTTCTTAAGGGGAACAATTTTTCTTCACATCTCTAAATAAAGAGAGTGAGATTTCGGGAAGGATGGCATAATTTAACAAACAACAGAGAGTGTGACCATTCAGATTGCCTTTTCCTATCAACCACTTGCAAGGCAGAAC----CTGTTTCAGAGATGA-AGCAATAGAAAGTGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59573644 531 + 187378091 CATACTGGAATTGCAAAATCTCGTTATGAGCATAGAATAATATCTATAAAAAGTCTTTAAGACAGCATGAAAAACATAGC-ATAATACcagtaacaaat--attttataatgtctaaaattttataacttcttttgtctat-tttcttaaaGCTCCCTTATGCCATAATTTGGCTGTAT---TTATGTGATAAACACACTCTTATCTTTGTAAtgaatttttaaggaaaagacagaaccatgtaaaatatgtttttgaaaaatgggCACATTATGCA-TGTGAATGCTCTCTCTCTACTAATTAATGTAATGTGGCAGTATCCAACAAACTAGAGCAGATGGGGCTCTAAGTCTTGTACCAGCCTATGCCGTTCTTAAGGGGAACAATTTTTCTTCACATCTCTAAATAAAGAGAGTGAGATTTCGAGAAGGATGGCATAATTTAACAAACAACAGAGAGTGTGACCATTCAGATTGCCTTTTCCTATCAACCACTTGCAAGGCAGAAC----CTGTTTCAAAGATGA-AGCAATAGAAAGTGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64509471 531 - 101219884 CATACTGGAATTGCAAAATCTCGTTATGAGCATAGAATAATATCTATAAAAAGTCTTTAAGACAGCATGAAAAACATAGC-ATAATACCAGTAACAAAT--ATTTTATAATGTCTAAAATTGTATAATTTCTTTTGTCTAT-TTTCTTAAAGCTCCCTTATGCCATAATTTGGCTGTAT---TTATGTGATAAACACACTCTTATCTTTGTAATGAATTTTTAAGGAAAAGACAGAACCATGTAAAATATGTTTTTGAAAAATGGGCACATTATGCA-TGTGAACGCTCTCTCTCTACTAATTAATGTAATGTGGCAGTATCCAACAAACTAGAGCAGATGGGGCTCTAAGTCTTGTACCAGCCTATGCCATTCTTAAGGGGAACAATTTTTCTTCACATCTCTAAATAAAGAGAGTGAGATTTCGGGAAGGATGGCATAATTTAACAAACAACAGAGAGTGTGACCATTCAGATTGCCTTTTCCTATCAACCACTTGCAAGGCAGAAC----CTGTTTCAGAGATGA-AGCAATAGAAAGTGT
i chlSab2.chr22                C 0 C 0
s calJac3.chr15                 46071297 531 -  98464013 CATACTGGGATTGCAAAATCTAGTTATAGGCATAGAATAATGTCTACAAAAAGTCTTTAAGATAGCATGAAAAACGTAGC-ATAATATCAGTAACAAAT--ATTTTATAATGTCTACAATTTTATAACTTCTTTTGTCTAT-TTTCTTAAAGCTCCCTTATGCTATAATTTGGCTATAT---TTATGTGATAATCACACTCTTATCTTTGTAATGAATTTTTAAGGAAAAGACAGAACCATGTAAAATATGCTTTTGAAAAATGAGCACATTATGCA-TGTGAATGCTCTCTCTTTACTAATTAATGTAATGTGGCAACATCCAACTAACTAGAGCAGATGGGGCTCTAAGTCTTATACCAGCCTATGCCATTCTTAAGGAAAAAAATTTTTGTTCACATCTCTGAATAAAGAGAGTGAGATTTTGGGAAGGATGACATAATTTAACAAGCAATAGAGAGTGTGACCATTCAGATTGCCTTTTCCTATGCACCATTTGCAATGCAAAAC----CTGCTTCAGGGATGA-AGGAATAGAGAGTAT
i calJac3.chr15                C 0 N 0
s canFam3.chr20                 16617689 524 +  58134056 CACATTCAAATTGTGAAACCGAGTTAGGGGCATAAAATAGTATCTATAAAAAGTCTTTAAGATAGCACAAAACTTTTTACAATGCTAACAGTAAGAAATAGATTTTATAATGCCTAAAATCTTATAACTACTTCTGTCTACATTTTTTAAACTTCCTTTATGCCATAATTTGGCTTTATTTGTTATATGATAATCAAACTCTTATCTTTGTAATGAATTTTTAATGAAAAGA------CATGCAAAATATGCCCATGGAAAGTGGGCACATTATATGTTGTGGATGCTGTCTCTTGATGAATTAGCATGCTGTGGCAGTATGCAACTCCTC----TAGATGGGGCTCTGAGCCTTGAACCAGCCTATTCTATTCTTAAGGGGAGTCATTTGTGTTTCCTTACTTAAATAAAGTGAGTG-GATTCAGGTAATAATGGCATAATTTAAC-------AGAGAGTGTAACCATTCTGAGGGCCTTTTCCTATTGACTATTTGCAACACAAAGCCTCACTGTTTGAGGAGTGACCGTAATAGAGTGt--
i canFam3.chr20                C 0 C 0

a score=1088664.000000
s hg38.chr14_KI270725v1_random     21958 394 +    172810 TGGAAGC-AAGACAGATACGAGTTGGAATCCCAACCATTGCCATGGGTGACCACTAAAcctcagcttcctcatcggcagtatggggataaccatagtagcaaacatttctaaaggtaattgtgagaagtaCTTTTATGACTGCACAATTAATGCTGCTTCTAGTACCACTACAACTGCTGCTATT-----CTATTACTATCAGTGCCTCT-------------ATTACTATCAGAGCCACAGAGCTCTAGCTTATAAGCCCATCTATTCATTTCTAGACTGACATGATCATTTTTGCATATTCTCATTGCCTCCCATTTCTACCTTCTCTAACTTATCCTGCAAATCACTACC----TAATTATATGTCAATATTCTGTTTTGAACTCTAGGTAAGTGCTTTCTC---TATTTCAATTTT
s panTro4.chr3                 201694101 394 - 202329955 tggaagc-aagacagatatgagttggaatcccaaccattgccatgggtgaccactaaacctcagcttcctcatcggcagtatggggataaccatagtagcaaacatttctaaaggtaattgtgagaagtaCTTTTATGAGTGCacaattaatgctgcttctactaccattacaactgctgctatt-----ctattactatcagtgcctct-------------attactaTCAGAGCCACAGAGCTCTAGCTTACAAGCCCATCTATTCATTTCTAGACTGACATGATCATTTTTGCATATTCTCATTGCCTCCCATTTCTACCTTCTCTAACTTATCCTGCAAATCACTACC----TAATTATATGTCAATATTCTGTTTTGAACTCTAGGCAAGTGCTTTCTC---TATTTCAATTTT
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69673572 394 + 202140232 tggaagc-aagacagatttgagttggaatcccaaccattgccatgggtgaccactaaacctcagcttcctcatcggcagtatggggataactatagtagcaaacatttctaaaggtaattgtgagaagtacttttatgagtacacaattaatgctgcttctactaccattacaactgctgctatt-----ctattactatcagtgcctct-------------attactaTCAGAGCCACAGAGCTCTAGCTTATAAGTCCATCTATTCATTTCTAGACTGACATGATCATTTTTGCATATTCTCATTGCCTCCCATTTCTACCTTCTCTAACTTATCCTGCAAATCACTACC----TAATTATATGTCAATATTCTGTTTTGAACTCTATGCAAGTGCTTTCTC---TATTTCAATTTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67601148 394 +  86207423 TGGAAGC-AAGACAGGTATGAGCTGGAATCCCAACCATTGCCATGGGTGACCACTAAAcctcagcttcctcatcagcagtatggggataaccatagtagcaaacatttctaaaggtaattgtgagaagtaCTTTTAAGAGTGCACAATTAATGTTGCTTCTACTACCATTACAACTGCTGCTATT-----CTATTACCATTAGTGCCTCT-------------ATTACTATCAGAGCCACAGAACTCTAGCTTATAAGCCCATCTATTCATTTCTAGACTGACATGATCATTTTTGCATATTCTCATTGCCTCCCATTTCTACCTTCTCTATCTTATCCTGCAAATCACTACC----TAATTATATGTCAATATTCTGTTTTGAACGCTATGCAAGTGCTTTCTG---TATTTCAATTTT
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61858219 394 + 192599291 TGGAAGC-AAGACAGATATGAGTTGGAATCCCAACCATTGCCACGGGCGACCActaaacctcagcttcctcattggcagtatggggataaccatggtagcaaatatttctaaaggtactcgtgagaaGTGCTTTTATGAGTGCACAATTAATGCTGCGTctactaccattacaactgctgctatt-----ctattactatcagtacctct-------------actactaTCAGAGCCACAGAGCTCTAGCTTATAAACCCATCTATTCACTTCTAGACTGACATGATCATTTCTGCATATTCTCATTGCCTCCCATTTCTACCTTCTCTAACTTATCCTGTAAATCGCTACC----TAATTATATGTCAATATTCTGTTTTGAACTCTATGCAAGTGCTTTCTC---TACTTCAATTTT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61014301 394 - 192460366 TGGAAGC-AAGACAGATATGAGTTGGAATCCCAACCATTGCCACGGGCGACCActaaacctcagcttcctcattggcagtatggggataaccatggtagcaaatatttctaaaggtactcgtgagaaGTGCTTTTATGAGTGCACAATTAATGCTGCGTctactaccattacaactgctgctatt-----ctattactatcagtacctct-------------actactaTCAGAGCCACAGAGCTCTAGCTTATAAACCCATCTATTCACTTCTAGACTGACATGATCATTTCTGCATATTCTCATTGCCTCCCATTTCTACCTTCTCTAACTTATCCTGTAAATCGCTACC----TAATTATATGTCAATATTCTGTTTTGAACTCTATGCAAGTGCTTTCTC---TACTTCAATTTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59574175 393 + 187378091 TGGAAGC--AGACAGATATGAGTTGGAATCCCAACCATTGCCACGGGCGACCACtaaacctcagcttcctcatcggCAGTATGGGGATAACCATGGTAGCAAATATTTCTAAAGGTACTCATGAGAAGTGCTTTTATGAGTGCACAATTAATGCTGCATCTACTACCATTACAACTGCTGCTATT-----CTATTACTATCAGTACCTCT-------------ACTACTATCAGAGCCACAGAGCTCTAGCTTATAAACCCATCTATTCACTTCTAGACTGACATGATCATTTCTGCATATTCTCATTGCCTCCCATTTCTACCTTCTCTAACTTATCCTGTAAATCGCTACC----TAATTATATGTCAATATTCTGTTTTGAACGCTATGCAAGTGCTTTCTc---tacttcaatttt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64510002 395 - 101219884 TGGAAGCCAAGACAGATATGAGTTGGAATCCCAACCATTGCCACGGGCGACCActaaacctcagcttcctcatcggcagtatggggataaccatggtagcaaatatttctaaaggtacttgtgagaaGTGCTTTTATGAGTGCAAAATTAATGCTGCGTctactaccattacaactgctgctatt-----ctattactatcagtacctct-------------actactaTCAGAGCCACAGAGCTCTAGCTTATAAACCCATCTATTCACTTCTAGACTGACATGATCATTTCTGCATATTCTCATTGCCTCCCATTTCTACCTTCTCTAACTTATCCTGTAAATCGCTACC----TAATTATATGTCAATATTCTGTTTTGAACTCTATGCAAGTGCTTTCTC---TACTTCAATTTT
i chlSab2.chr22                C 0 C 0
s canFam3.chr20                 16618213 410 +  58134056 -tgaagt-aagacaagcgcagggtggagtcttgatt-ctaccttgggaagccactaaacctcagtttcctcatctgtaaaatgtgaataatgatagtagcaatggtgtgaaagggttcttttgaggagtaa---tatgagtgcacaataaatgCTGCTTCTATAGTTATTACTACTGCTGCTGCTACTCCTTCCTCCTGTTAGCACCTCTATTTCTTATTCCCATTATTCCCAGGTTCACAG--TTCTAGTTAATAATCTCCTCGATTCATGACTACATTAACATGGTCATCCCTGCATA--CTCATTGTCTCCCATCTCTACTTCCTTTAATGTATCCTGAAAATCACTGCCTGATTGATTACATGTAAAGATTGTATTTTGAACTCTAAGCAACTTATTTCTCtttttttttaatttt
i canFam3.chr20                C 0 I 236

a score=206629.000000
s hg38.chr14_KI270725v1_random     22352 88 +    172810 AAAAAAGAAATTCTTGCTCCAAGTCAGTGATTCTCCACCAGGGATAACTGTAATGTACAGAGAACCTTTAGTAATGTCT-GAAAAAAGC
s panTro4.chr3                 201694495 88 - 202329955 TAAAAAGAAATTCTTGCTCCAAGTCAGTGATTCTCCACCAGGGATAATTGTAATGTACAGAGGACCTTTAGTAAAGTCT-GAAAAAAGC
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69673966 88 + 202140232 AAAAAAGAAATTCTTGCTCCAAGTcagtgattctccaccagggataactgtaatgtacagaggacttttagtaatgtct-gaaaaAAGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67601542 88 +  86207423 AGAAAAGAAATTCTTGCCCCAAACcagtgattctccaccagggataattgtaatgtacagaagacctttagtaatgtct-gaaaaAAGC
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61858613 88 + 192599291 AAAAAATAAATTCTTGCTCCAAGTCATTGATTCTCAACCAGAGATAACTGTAATGTACAGAGGACCTTTAGTAATGTCT-GAAAAAAGC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                  61014695 88 - 192460366 AAAAAATAAATTCTTGCTCCAAGTCATTGATTCTCAACCAGAGATAACTGTAATGTACAGAGGACCTTTAGTAATGTCT-GAAAAAAGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59574568 89 + 187378091 aaaaaataaattcttgctccaagtcagtgattctcaaccagaGATAATTGTAATGTACAGAGGACCTTTAGTAATGTCTGGAAAAAAGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64510397 88 - 101219884 AAAAAATAAATTCTTGCTCCAAGTCAGTGATTCTCAACCAGAGATAACTGTAATGTACAGAGGACCTTTAGTAATGTCT-GAAAAAAGC
i chlSab2.chr22                C 0 C 0
e canFam3.chr20                 16618623 236 +  58134056 I

a score=383311.000000
s hg38.chr14_KI270725v1_random     22440 136 +    172810 atcttgacccacagaggacatttagcaacatctagatg-cacttttggctgtcacaactagaggtaca---ggtactattggcatctagagatagaggccagggaagcttctaaacatcctataattc---aGACTCCTCTTG
s panTro4.chr3                 201694583 136 - 202329955 atcttgacccacagaggacatttagcaacatctagacg-cactttcggctgtcacaactagaggtgca---ggtactattggcatctagagatagaggccagggaagcttctaaacatcctataattc---agactcctcttg
i panTro4.chr3                 C 0 C 0
s ponAbe2.chr3                  69674054 136 + 202140232 atcttgacccacagaggacatttagtaacatctagatg-cacttttggctgtcacaactagacgtaca---ggtactattggcatctagagatagaggccagggaagcttctaaacatcctataattc---agactcctcttg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr21                 67601630 136 +  86207423 atcttgacccacagaggacattcagcaacatctagatg-cacttttggctgtcacaactagaggtaca---ggtactattggcatctagagatagaggccagggaagcttctaaacatcctacaattc---agactcctcttg
i nomLeu3.chr21                C 0 C 0
s rheMac3.chr2                  61858701 136 + 192599291 atcttgacccacagaggacatttagcaacatctagatg-cacttttggctgtcacaactagagggaaa---ggtactattggcgcttagagatagaggccagggaagcttctaaacatcctataattc---agactcctcttg
i rheMac3.chr2                 C 0 N 0
s macFas5.chr2                  61014783 136 - 192460366 atcttgacccacagaggacatttagcaacatctagatg-cacttttggctgtcacaactagagggaaa---ggtactactggcacttagagacagaggccagggaagcttctaaacatcctataattc---agactcctcttg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59574657 136 + 187378091 ATCTTGACCCACAGAGGACATTTAGCAACATCTAGATG-CACTTTTGGCTGTCACAACTAGAGGGAAA---GGTACTATTGGCGCTTAGAGATAGAGGCCAGGGAAGCTTCTAAACATCCTATAATTC---AGACtcctcttg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64510485 136 - 101219884 atcttgacccacagaggacatttagcaacatctagatg-cacttttggctgtcacaagtagagggaaa---ggtactattggcgcttagagatagaggccagggaagcttctaaacatcctataattc---agactcctcttg
i chlSab2.chr22                C 0 C 0
s canFam3.chr20                 16618859 140 +  58134056 attttaacccacagaagacatttgataatgtctgggggaaaattctggttgtcacaat--gaggaaaatggggtgctactggcatccagtgatagaggcca-ggaagctgctaaacatcgtacaatgccctggattcctccca
i canFam3.chr20                I 236 C 0

a score=6567.000000
s hg38.chr14_KI270725v1_random     22576 3 +    172810 CCT
s panTro4.chr3                 201694719 3 - 202329955 cct
i panTro4.chr3                 C 0 N 0
s ponAbe2.chr3                  69674190 3 + 202140232 cct
i ponAbe2.chr3                 C 0 N 0
s nomLeu3.chr21                 67601766 3 +  86207423 cct
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                  61014919 3 - 192460366 tct
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                  59574793 3 + 187378091 tct
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr22                 64510621 3 - 101219884 cct
i chlSab2.chr22                C 0 N 0
s canFam3.chr20                 16618999 3 +  58134056 cct
i canFam3.chr20                C 0 C 0

a score=-95.000000
s hg38.chr14_KI270725v1_random    22579 3 +    172810 GAA-
s nomLeu3.chr21                67601769 3 +  86207423 caa-
i nomLeu3.chr21                C 0 N 0
s macFas5.chr2                 61014922 3 - 192460366 caa-
i macFas5.chr2                 C 0 N 0
s papAnu2.chr2                 59574796 3 + 187378091 caa-
i papAnu2.chr2                 C 0 N 0
s canFam3.chr20                16619002 3 +  58134056 -aat
i canFam3.chr20                C 0 C 0

a score=418.000000
s hg38.chr14_KI270725v1_random    22582 9 +   172810 CATGAAGTA
s canFam3.chr20                16619005 9 + 58134056 aatgaatta
i canFam3.chr20                C 0 N 0

a score=3420.000000
s hg38.chr14_KI270725v1_random   23069 39 +   172810 TCTTACCCTTTCACAGCTGGAGAGTGGAGCCTGGGcctg
s ponAbe2.chr2a_random         8993272 39 + 13868332 TCTTACCCTTTCACAGCTGGGGAGTGGAGCCAGGGCCTG
i ponAbe2.chr2a_random         N 0 I 722

a score=0.000000
s hg38.chr14_KI270725v1_random   23108 17 +   172810 cgcctctctgcgcctgc
e ponAbe2.chr2a_random         8993311 722 + 13868332 I

a score=800.000000
s hg38.chr14_KI270725v1_random    23125 8 +    172810 gccgccgc
s gorGor3.chr9                 49292589 8 + 121947112 gccgccgc
i gorGor3.chr9                 N 0 I 70
e ponAbe2.chr2a_random          8993311 722 +  13868332 I

a score=0.000000
s hg38.chr14_KI270725v1_random    23133 62 +    172810 tgtgcccctcgccgccgctgtccgcctctccgccgcgccgccgctgaccgcctctccgccgc
e gorGor3.chr9                 49292597 70 + 121947112 I
e ponAbe2.chr2a_random          8993311 722 +  13868332 I

a score=800.000000
s hg38.chr14_KI270725v1_random    23195 8 +    172810 gccgccgc
s gorGor3.chr9                 49292667 8 + 121947112 gccgccgc
i gorGor3.chr9                 I 70 I 619
e ponAbe2.chr2a_random          8993311 722 +  13868332 I

a score=0.000000
s hg38.chr14_KI270725v1_random    23203 167 +    172810 tgtccgcctctccgccgcgccgccgctgaccgcctctccgccgcgccgccgctgtccgcctctccgccgcgccgccgctgtccgcctctccgccgcgccggcaccggcgctgtgtgcctttgcaagggcggagctgcgttctcctcggcacagacccggagagcatt
e gorGor3.chr9                 49292675 619 + 121947112 I
e ponAbe2.chr2a_random          8993311 722 +  13868332 I

a score=9904.000000
s hg38.chr14_KI270725v1_random    23370 113 +    172810 gcgagggcggagccgcgttctgctctgcacagaccttgggg-cactgcctcgctttgggacaactcggggccgcatcgacggtgaataaaatccttcctgtttgcagccctgTT
s ponAbe2.chr2a_random          8994033 114 +  13868332 gcgagggcggagctgcgttctgctcagcacagaccttgggggcactgcctcgctttgggacaactcggggccgcatcgacggtgaataaaatccttcctgtttgcacccctgTT
i ponAbe2.chr2a_random         I 722 C 0
e gorGor3.chr9                 49292675 619 + 121947112 I

a score=1484.000000
s hg38.chr14_KI270725v1_random    23483 6 +    172810 tgtggt
s ponAbe2.chr2a_random          8994147 6 +  13868332 tgcggt
i ponAbe2.chr2a_random         C 0 C 0
s papAnu2.JH685018                78572 6 -    139415 TGCGGT
i papAnu2.JH685018             N 0 C 0
e gorGor3.chr9                 49292675 619 + 121947112 I

a score=84217.000000
s hg38.chr14_KI270725v1_random    23489 210 +    172810 tggtggcagcgatggacactgcagccagccagagcgtagaaaggcatcggggtaagtgcactatcc-aggctgcactgcgggtggcctgggacgggttgggagccctatctcaggtgtcactgcccatcttgggtggctggttgggtgtgctatctggggctgtgctgcctgcacc----gg-ggggtggtttgggggcccaaaccggggctgcac
s ponAbe2.chr2a_random          8994153 210 +  13868332 tggtggcagcgatggacactgcggccagccagagcatagaaaggcgt-gtggtaagtgcgctatcc-gggctgcactgcgggtggcctgagacgggttgggggccctatctcaggcgtcactgcccgccttgggtggctggttgggtgtgctatctggggctgtgctgcctgcacc----ggaggggtggtttgggggcccaaaccggggctgcac
i ponAbe2.chr2a_random         C 0 C 0
s papAnu2.JH685018                78578 215 -    139415 TGGTGGCAGGGACCGAAACTGCAGCTGTCCAGAGTGTAGAAAGGCATTGGAGTAACTGTGCTCTCCAGGGCTGCATCGCCCACGGCCTGGGGTGGGTTGGGGGTCCTATCTCAGGCATGACTGCCTGCCTTGGGTGACTGGTTGGGTGCACCATCTGGGGCTGTGTTGCCTGCACTGGAggg-ggggTGGGTTGGGAGTCCTATCTGGGGCTGCCC
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                 43285672 208 -  75399963 tggtggcagggaacgacactgcagctgtccagagcatagaaaggcatcg--gtaagcgcattttccagggctgcaccgcccgcggcctggggtgggttgggagccctatctcaggcgtcactgcccatcttgggtggctggttgggtgtgccatct-gtgctgtgttgcctgcacc----gg-ggggtgggttgggggccctatcctgggctgcac
i chlSab2.chr5                 N 0 C 0
e gorGor3.chr9                 49292675 619 + 121947112 I

a score=70029.000000
s hg38.chr14_KI270725v1_random     23699 104 +    172810 tgcctttggcggggagccggttgggggcactatcccagactgtattgctggcaacagtgaggtgggctaagtgtgctatccagggctgcactgtgcggctgtgg
s ponAbe2.chr2a_random           8994363 104 +  13868332 tgcccttggcggggagccggttgggggcactatcccggactgtattgctggcagcagtgaggtgggccaagtatgctatccggggctgcactgcgaggctgtgg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114469251 104 + 115148730 TGCCTTcggcagggagctggttgagggcactatcccatactgtattgctggcaacagtgaggtgggctaaatgtgctatctggggctgcactgcgtggctgtgg
i nomLeu3.chr7b                N 0 C 0
s papAnu2.JH685018                 78793 103 -    139415 TGCCCTCCGCAGCGAGCGGGTTGGGGGCACTATCCGCGACTGTATTGACAGCAGCAGTGAGGTGGGTTAAGGGTGCTATCTGGGCCTGCACTACCCTT-TGTGG
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43285880 103 -  75399963 tgccctcggtggggagcgggttgggggcgctatccgagactgtattgacggcagcagtgaggtgggttaaggcttctatctgggcctgcactacccgg-tgtgg
i chlSab2.chr5                 C 0 C 0
e gorGor3.chr9                  49292675 619 + 121947112 I

a score=-300.000000
s hg38.chr14_KI270725v1_random     23803 1 +    172810 g
s gorGor3.chr9                  49293294 1 + 121947112 c
i gorGor3.chr9                 I 619 I 1816
s ponAbe2.chr2a_random           8994467 1 +  13868332 g
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114469355 1 + 115148730 c
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 78896 1 -    139415 G
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43285983 1 -  75399963 g
i chlSab2.chr5                 C 0 C 0

a score=184217.000000
s hg38.chr14_KI270725v1_random     23804 273 +    172810 g--ggtggggtggcggtttcgg-ttgagggcgctatggggtgctgtaatgcccatggtccagggaggcggggcagtttgggtatgttgggtgtgctattggggggggcgacactgctggt----ggtagggggcagggtgggttgggggccatatcaggggctgcactgattgctttagctaggatttcaggtactatgttaaacaacagtggtgacagggggcatccttatcatgttcca--gatcttagaggaaaagctttccatttttccccattccat
s ponAbe2.chr2a_random           8994468 276 +  13868332 gtggggggggtggcggtttcgggttgagggcgctgtggggtgctgcaatgcccatggtgcggggaggcgaggcggtttgggtgtgttggatgtgctattggggggagcgacactgctggt----ggtagggggcagggtgggttgggggccatatcaggggctgcactgattgctttagctaggatttctggtactgtgttaaacaacagtggtgacagggggcatccttatcatgttcca--gatcttagaggaaaagctttccatttttccccattccat
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114469356 274 + 115148730 --gggggtggtggcgattttgggttgagggcactatggggtgctgcaatgcccatggtgcgtggaggcagggtggtttgtgtgtcttcggtgcgctattgtgggggtctacactgctggt----ggcagggggcagggtgggttgggggccatgtcaggttctgcactgattgctttagctgggatttccagtactatgtttaacaacagtggtgacagtgggcatccttatcatgttcga--gatcttagaggaaaagctttccattttcccccattccat
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 78897 254 -    139415 -TGGGGGG----------TTGGGTTGAGGGCGCTATGGAGTGCTGTAGTGCCCACAGTGcgggggggcggggcggtttgggtgtgttggg-gtgctat-------------actgctggtggcgggca-ggggtggggtgggttgggggccatatcaggggcTGCACTGATTGCTTTAGCTAGGATTTCCGGTACTATGTTAAATagcagtggtgacagtgggcatccttgtcatgttcca--aatgttagaggaaaagctttccatTTTTCCCCGTTCCAT
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43285984 265 -  75399963 -cgggggg---------tttgggttgagggcgctatggggtgctgcagtgcccacggtgcagggagg-ggggcggtttgcgtgtgttgggtgcgctatt-tgggggtctacactgctgtt----ggca-ggggcggggtgggttgagggccgtatcaggggctgcagtgattgctttagctaggatttccagtactgtgttaaatgtcagtggtgacagtgggcatccttatcatgttccaagaatgttagaggaaaagctttccatttttccccattgaat
i chlSab2.chr5                 C 0 C 0
e gorGor3.chr9                  49293295 1816 + 121947112 I

a score=1763422.000000
s hg38.chr14_KI270725v1_random     24077 1539 +    172810 atgattctagctgtgggtgtctttcctgtagtttttattatgttgcggtatgtttcttttgtgcctgtttctttgaggatttatagcatgaagggatgttgaatttcatcaaatgctttttcggtttcagttgacgtgatcatactgtttttgtcatttatttggttgatatgatgtatcacattgtatgttgagtgactcttgcatcccagggatacatcccacttgatcatgatgaattatctttttaatgtattactgaatttgattcactggtattttgttgaggatttttgcatcaatattagagatactggcctgtagtttccttctttgatgcttttatctgatttttgtatcacagtaataatggtctcatagaataagtttggaagtattccctcctgtttttcaaaatagtttgagcaggattcgtactaggtctttaaattgtttgctgtgaagccatcagcagtgaagacatcagttcctgggcttttctttactgggagactttttctgatggcttcaatctcattacttgttaccaatctgttctggtcttggatgttttcattgtttaacctaagtaggttgtatgcatctaggaatttgccaatttctactaggctttccaatttattggcatataatagccagttatgatcctttgaatttct-gaagtattagttgtaatgtctcc-ttttt--ttaatctgttgattttatttatttgaatcttgtctcttttct------taggctggtta---aaagtttgtcaattttgtttagctttccagaaaaccaacttttcgtttaatcttgtgtg--ttttttatttcaattttgtttctgctacgatctt----agttattttcttatttttggtttagtttgttcttactttactagttctttaagatgtattgtttatttgaagtttttcttttgtttggatggtaggcacttata-------------gctgt----------------aaatctctgcctttgtactgctttctgcgta--acaagtcttggtatactgtgttttcattaccctttgtttcatgaaatttttgaatttctgtgttagtatcttcattgacccgctagtcatttattcaggagggtagtatttaacttccatgtgattgtattgtttccaaaattacttttcttattgatacctagttttattcctttgtagtgaaagaagatggccacagagacagacagcagcgtggttagagtggtaggagccggccatcagcgagagctgctccatgcctggctgctgggtgctagagcctgcagccc-actggcttgcctcactgtggttggtggtggcagtaacagagactgcagcacaaccagagtggtaggacaggggctatccagggctgcacctttcgcagtgtggggtgggttgggggcgctatccagggtgtcattgcctgcattaggggtactggttggtagcactccacagggctgcactacccacggcagggagggtgtgttatgggtgctttctggggctgcagtgcccatggaggaggacaggttagggca
s panTro4.chrUn_GL393527          107546 1536 +    341619 atgattctagctgtgggtgtctttcctgtagtttttattatgttgcagtatgtttcttctgtacccgtttctttgaggattaatagcatgaagggatgttgaatttcatcaaatgctttttcagtttcagttgacatgatcatactgtttttgtcatttatttggttgatatgatgtatcacattgtatgttgagtgacccttgcatcccagggatacatcccacttgatcatgatgaattatctttttaatgtattactgaatttgattcactggtattttgttgaggatttttgcatcagtattagagatactggcctgtagtttccttctttgatgactttgtctgattttggtatcaaagtaataatggtctcatagaataagtttggaagtattccctcctgtttttcaaaatagtttgagtaggattcatactaggtctttaaattgtttggtgtgaagccatcagcagtgaagacatcagttcctgggcttttctttactgggagactttttctgatggcttcaatctcattacttgttaccgatctgttctggtcttggatgttttcattgttcaacctaagtaggttgtatgcatctaggaatttgtcaatttctactaggctttccaatttattggcatataatagccagttatgatcctttgaatttct-gaagtattagttgtaatgtctcc-ttttt--tta-tctgttgattttatttatttgaatcttgtctcttttttcttagttagcctggtta---aaagtttgtcatttttgttttgctttccagaaaaccaacttttcgtttaatcttgtgtg--ttttttctttcaattttatttctgctacgatctt----atttattttcttattttcggtttagtttgctctt----tactacttcgttaagatgtattgtttatttgaagtttttcttttgtttggatggtaggcacttata-------------gctgt----------------aaatctctgcctttgtactgctttctgcata--acaagttttggtatactgtgttctcgttaccctttgtttcatgaaatttttgaatttctgtcttagtatcttcatttacccgctagtcatttattcaggagggtagtgtttaacttccatgtgattgtattgtttccaaaattactcttcttattgatacctagttttattcctttgtagtcaaagaagatggccacagagacag----cagcgtggtcagagtggtaggaggcggacatcggcgagagctgctccgtgcctggctgctgggtgctagagcctgtggccc-actggcttgcctcactgtggttggtggtggcagtgacagagactgcagcacgaccagagtggtaggacaggggctatccagggctgcacctttcacagtgtgggatgggttgggggcgctatccagggtgtcattgcctgcattagggctactggttggtagcactgtacagggctgcactgcccacggcagggagggtgggttatgggcactttctggggctgcaatgcccatagaggaggacaggttagggca
i panTro4.chrUn_GL393527       N 0 C 0
s ponAbe2.chr2a_random           8994744 1542 +  13868332 atgattctagctgtgggtgtctttcctgtagtttttattatgttgcggtatgtttcttctgtacccgtttctttgaggatttatagcatgaagggatgttgaatttcatcaaatgctttttcagtttcagttgacatgatcatactgtttttgtcgtttatttggttgatatgatgtatcacattgtatgttgagtgacccttgcatcccagggatacatcccacttgatcatgatgaattatctttttaatgtattactgaatttgattcactggtattttgttgaggatttttgcatcaatattagagatactggcctgtagtttccttctttgatgcctttgtctgattttggtatcacagtaataatggtctcatagaataagtttggaagtattcccccctgtttttcaaaatagtttgagtaggattcatactaggtctctaaattgtttggtgtgaagccatcagcagtgaagacattagttcctgggcttttctttactgggagactttttctgatggcttcaatctcattacttgttaccaatctgttctggtcttggatgttttcattgttcaacctaagtaggttgtatgcatctaggaatttgccaatttctactaggctttccaatttattggtatataatagccagttatgatcctttgaatttct-gaagtattagttgtaatgtctcc-ttttttatta-gctgttaattttatttatttgaatcttgtctcttttctcttagttagcctggtta---aaagtttgtcaattttgtttagctttccagaaaaccaacttttcgtttaatcttgtgtg--ttttttatttcaattttatttctgctacgatctt----atttgttttcttattttcggtttagtttgttcttactttactagttctttaaaatgtattgtttatttgaagtttttcttttgtttggacggtaggcacttata-------------gctgt----------------aaatctctgcctttgtactgctttctgtgta--acaagttttgatatactgtgttttcattacactttgtttcacgaaatttttggatttctgtcttagtatcttcattgacccgctagtcatttactcaggagggtagtgtttgacttccatgtgattgtattgtttccaaaattactcttcttattgatacctagttttattcctttgtagtcgaagaagatggccacggagacag----cagcgtggtcagagtggtaggagccgcccatcggcgagagctgctctgtgcctggctgctgggtgctagagcctgtggccc-actggcttgcctcactgtggttggtggtggcggtgacagagactgcagcacgaccagagtggtaggacaggggctatccagggctgcacctttcacagtgtggggtgggttgggggcgctatccagggtgtcattgcctgcattaggggtactggttggtagcactgtacagggctgcactgcccacggcagggagggtgggttatgggcactttctggggctgcaatgcccatggaggaggacaggttagggca
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114469630 1536 + 115148730 ctgattctagctgtgggtgtctttcctgtagtttttattatgttgcggtgtgtttcttctgtacccgtttttttgaggatttacagcatgaaggcatgttgaatttcatcaaatgctttttcagtttcagttgacatgatcatactgcttttgtcgtttatttggttgatgtgatgtatcacattgtatgctgagtgacccctgcattccagggatacatcccacttgatcatgatgaattatctttttaatatattattgaatttgaatcact-gtattttgttgaggaattttggatcaatattcgagatactggcctatagtttccttctttgatgcctttgtctgattttggtatcacagtaataatggtctcatagaataagtttggaagtattctctactgtttttccagatagtttgagtagggttggtactaggtctttaaattgtttggtgtgaagccatcagcagtgaagacatcagttgctgggcttttctttaccgggagactttttctgatggcttcaatctcattacttattaccaatctgttctggtcttggatgtctccattgttcaacgtaagtaggttgtatgcatctaggaatttgccaatttctactaggctttccaatttattggcatgtaatagccagttattatcctttgaatttct-gaagtatcagttgtaatgtctcc-ttttt--tta-tctgttgattttatttatttgagtcttgtctcttttttcttagttagcctcgtta---aaagtttgt-aattttgtttagctttccagaaaaccaacttttcgtttaatcttgtttg--ttttttatttcaattttacttctgctatgatctt----acttattttgttatttttggtttagtttgttattactttactagttctttgagatgtattgtttatttgaagttttt-ttttgtttggatggtaggctcttata-------------actat----------------aaatctcggcctttgtactgctttctgtgta--acaa-tattggtatactgtgttttcattaccctttgtttcatgaaatttttgagtttctgtcttaatatcttcattgacccactagtcatttattcaggagggtagtgtttaacttccctgtgattgtattctttccaaagttactcttcttattgatacctattttcattcctttgtagtcaaagaagatggccacggagacag----cagcgtggtaggagtggtaggagccggccatccgcgagagctgctctgtgccaggctgctgcatgctagagcctgcggccc-actggcttgcctcactgtggttgatggtggcagtgacagagactgcagcacgaccagagtggtaggacaggggctatccagggctgaacctttcgcagtgtggggtgggttgggggcgctatccagggtgtcattgcctgcattaggggtactggttggtagcactgtacagggctgcactgcccacggcagggagggtgggttatgggcgctttctggggctgcaatgcccatggaggaggacaggttagggca
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 79151 1533 -    139415 ATAATTCTAGCTGTGAGTCTCTCtcatgtggtttttattatggtgaggtatgtttcttctgtaCCTGGTTTTTTGAGGATTtatagcatgaagggatgttgaatttcatcaaatgctttttcagtttCAGTTGACATGATCATactgtttttgtcctttatttggTTGATAAGGTGTATCACATTGTGTGTCGAGtgatccttgcatcccaggagtacatcccacttgatcataatgAATTATCTTTATAATGTAttgctgaatttgatttgctgGTGTTGTGTTCAGGATTTATGCATCAGTATTAGAGATGCTGACCTGTGGTTTCCTTCTTTGATGTCTTAgtctgactttggtatcagggtaataatggcctcatagaataagtttggGAGTATTCTTTCCTGTTTGTTAAaatagtttgagaaggattggtactAGGTCTTCAAA-TGTTTGGTGTGAAGCCAtgagcagtgaagccatcaattcctgggcttttctttactgggagacatTTTCTgatggcttcaatctcattacttgttactgATTTGTTCTGATTTTGGATGTTTTCACTGTTCAATCTAGGTAGGTTGTATGCATCTAGGAATTTGTCAGTTTCTACTAGGCTTTCCAATTTATCGGCATATAATAGCCAGttatgatcctttgaatttctagaAGTATCAGTTGTGATAtctcc--tttt--tta-tctcttgat----tttatttgagtcttctctcttttttcttagttagccTGGTTAACTAAAGTTTGGCAGTTTTCTTTAGCTCTccagaaaaccaactttttgtttaatcttttgta-ttttttaatttcaattttgtttttgttatgatctttatcatctattctcttattttaagtttaGTTTGTTCTC-----actagttctttaagatgtattg----tttgaagttttt-ttctgtttggatgGTAGGCACTTATG-------------GCtat----------------aaatttctgcttttgtaCTGCTTTCTGCATatcataagttttggtatattgtgttttcattacCATTTGTTTCAGGAAATGTTTCAGTTTCCATCTTAGTATCTTCATTGACCAACTAGTCATTCATTCAGCAGTGTATTGTTTAACTTTAACTTGACTGTATACTTTCCAAAATTCCTTCTCTTATTGATATctagttttattcctttgtagTCAAAGAAGATGGCCATGGAGACAG----CATCATGATCAGAGTGGTAGGAGGCAGCCATCAGCAAGAGCTGCTCTGTGCCCAGCTGCTGGGTGCTAGAGCCTGCAGCCC-AGTGGCTTGCCTCATTGCGGTTGATGGCAGTGACGACAGAGACTGCAGCACAACCAAAGTGGTAGGACAGGGGCTATCTGGGGCAGCACTTTTCGCAGTGTGGGGTGGGTTGGGGGTGCTATCCGGGGTGTCACTACCTGCGTTGGGGGTACTGGCTGGTAGCACTATACAGGGCTGCACTGCCCACGGC--GGTGGGTGGGTCATGGGCACTCTTTGGGGCTGCAATGCCCATGGTGGGGGACAGGTTAGGGCA
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43286249 1565 -  75399963 ataattctagctgtgagtctctctcatgtggtttttattatggtgaggtatgtttcttctgtacctggttttttgaagatttatagcatgaagggatgttgagtttcatcaaatgctttttcagtttcaatggacatgatcatactgtttttgtcttttatttgtttgatatgatgtatcacattgtgtgttgaatgatgcttgcatcccagggatacatcccacttgatcataatgaattatctttataatgttttgctgaatttgatttgctggtattgtgttcaggatttatgcatcaatattaaagatattggcctgtagtttctgtctttgatgtctttgtctgactttggtatcagggtagtaatgaccgcatagaatgagtttggaagtattctctccagttttttaaaatagtttgagtaggattggaactgggtctttaaa-tgtttgatgtgaagtcatcagcagtgaagccatcaattcctgggcttttctttaatgggagacgttttctgatggcttcaatctcattacttgttaccgatctgttctgattttggatgtattcacggtttaacctaggtaggttgtatgtgtctaggaatttgtcaatctctactaggctttccagtttattggcatataatagccagttatgatcctttgaatttctagaagtaccacttgtaatgtctcctttttt--tta-tctcttgat----ttcatttgagtcttctctctttttccttagg----ctggcta---aaagtttctcagttttgtttagctttgcagaaaaccaactttttgtttaatcgtttgtatttttttcatttcaattttatttttgttacgatctttattatctcttctcttattttgggtttagttcttactt----gactagttctttaagatgtattgttcatttgaagtttttcttctgtttggatggtgggccattgtactgcttttgtactgccattgtacaaaaagaaaaaaagtttctgccattgtactgctttctgcatatcgtaagttttggtatattgtgttttcattaccatttgtttcaggaaatttttgaatttctatcttagtatgttcattggccaactagtcattcattcagaagtgtattgcttaacttccatgtgattatatagtttccaaaatttcttttcttattgatatctagttttattcctttgtagtcaaagaaCAtggccatggagacag----catcatggtcagagtggtaggagggagccatcagcaagagctgctccaggccaggctgctgggtgctagagcctgcagccctggcggcttgcctcactgtggtttgtggtgatggcgacagagactgcagcacgaccagagtggtaggacagggactatccggggctgcactttttacagtagggggggggttaggggcactatccggggtgtcactgcctgcgttgggggtactggttggtagcactatacagggctgcgctgcccatggt--tgggggtgggttatgggccctctctggggctgcattgcccatggagggggacaggttagggca
i chlSab2.chr5                 C 0 C 0
e gorGor3.chr9                  49293295 1816 + 121947112 I

a score=2100.000000
s hg38.chr14_KI270725v1_random     25616 1 +    172810 c
s panTro4.chrUn_GL393527          109082 1 +    341619 c
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49295111 1 + 121947112 c
i gorGor3.chr9                 I 1816 I 1013
s ponAbe2.chr2a_random           8996286 1 +  13868332 c
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114471166 1 + 115148730 c
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 80684 1 -    139415 C
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43287814 1 -  75399963 c
i chlSab2.chr5                 C 0 C 0

a score=358130.000000
s hg38.chr14_KI270725v1_random     25617 309 +    172810 tatcgggtatacgctactggcggcattgggggacggaggtggggggcgctattgagggcaggactagccgtggagggcgggcgagttcggtgctatcaggggctgcactgctggcggcggTCAACAGA---------------GTTGGCATCCAAGGAAGGAGTGGTTCTCCTCTCCCT-GACTCCACACTCCAGAGGGCAACCCACTCTTGGTCATACTGGAGTGTGGCAGGGCACGCAGCGTTTGCATGGGAATCCTGAGCATGGCAGAGCCCCCACACCCACCGTGGTTCCTGGGCCTATGCACTCTGGGTCTGTGCCTCAG
s panTro4.chrUn_GL393527          109083 308 +    341619 tatcgggtatacgctactggtggcattgggggacggaggtggggggcgctattgagggcaggactagccgtggagggcgggcgagttcggtgctatcagggactgcactgctggcggcggTCAGCAGA---------------GTTGGCATCCAAGGAAGGAGTGGTTCCCCTCTCCCT-GACTTCACACTCCAGAGGGCGACCCACTCTTGATCATACTGGAGTGCGGCAGG-CACGCAGCGTTTGCGTGGGACTCCTGAGCATGGCAGAGCCCCCACACCCACCGTGGTTCCTGGGCCTGTGCACTCTGGGTCTGTGCCTCAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8996287 308 +  13868332 tatcgggtatacgctactggcggcattgggggacggaggtggggggcgctgttgagggcaggactagccgtggagggggggcgagtttggtgatatcaggggctacactgctggcggcggTCAGCAGA---------------GTTGGCGTCCAAGGAAGGAGTGGTTCTCCTCTCCCT-GACTCCACACTCCAGAGGGCGACCTACTCTTGGTCATACTGGAGTGCGGCAGG-CACGCAGCATTTGCGTGGGAATCCTGAGCATGGCAGAGCCCCCACACCCACCGTGGTTCCTGGGCCTGTGCACTCTGGGTCTGTGCCTCAG
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114471167 307 + 115148730 tatcgggtatatgctactggcagcattgggggatggaggtggggggcactattgagggcaggagtagctgtggaggtggggcgagttcgttgctatcagggactgcactactagcggcggTCAGCAGA---------------GTTGGCTTCCAAGGAAGGAGTGGTTCTCCTCTCCCT-GACTCCACACTCCAGAGGCCGACTTACTCTTGGTCATACTGGAGTGCGGCAGG-CGCACAGCATTTGCGTGGGTATCCTGAGCAT-GCAGAGCCCCCACACCCACCGTGGTTCCTGGGCCTGTGCACTCTGAGTCTGTGCCTCAG
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 80685 322 -    139415 TATCAGATATACGCTGCTGTCAGCAttgtggggtggaggtggggg-tgctATTGAGGGCAGGACTACCTGTGGAGAG-GGGCGAATTGGGTGCCATCAGGAACTGCACTATTGGCAACAGTCGGCAGAGGTGGCAGCAACAGTGGTGGCATCCAAGGAAGGAGCGGTTCTCCTCTCCCTGGACTCCACACTTCAGAAGGCGACCTACTCTTACTCATACTGGAGTGTGGCAGG-CGCACAGTGTTTCCGTGGGAATCCTGAGCATGGCAGAGCCCCCACACCCACCATGGTTCCTGAGCCCATGCACTCTGGGTCTGTGCCGCAG
i papAnu2.JH685018             C 0 M 562
s chlSab2.chr5                  43287815 323 -  75399963 tatcggatatacgctgctgtcagcattgtggggtggaggtgggggatgctattaagggcaggactacctgtggagag-gggcgagttgggtgctatcaggggctgcgctgctggtggcagTCGGCAGAGGTGGCAGCAACAGTGGTGGCATCCAAGGAAGGAGTGGTTCTCCTCTCCCTGGACTCCACACTCCAGAGGGCGACCTATTCTTACTCATACTGGAGTGCGGCAGG-TGCACAGTGTTTCCGTGGGAATCCTGAGCATGGCAGAGCCCCCACACCCGCCATGGTTCCTGGGCCCATGCACTCTGGGTCTGTGCCGCAG
i chlSab2.chr5                 C 0 C 0
e gorGor3.chr9                  49295112 1013 + 121947112 I

a score=161658.000000
s hg38.chr14_KI270725v1_random     25926 211 +    172810 AGGCTGCCAGGCACCCC------------TGGGGACACCACGGGGGACAGGGCCCTGTGCGTGGAGGTGTCCGGAACAGGAATTGGCACCTGGGTGTGGAGGGCTGGCTGGGTCTGAATTTTTCTGCTTCTCCTGTTCCCCGAGGAGTGCAGCCCCGGTGGGCCCAATGGTTCCTGTGGAGTGGGGAGCTGGAATCTGTGGTGTCTCCAGCACCCACCCCAGA
s panTro4.chrUn_GL393527          109391 208 +    341619 AGGCTGCCAGGCACCCC------------TGGGGACACCACGGGGGACAGGGCCCTGTGT---GAGGCGTCCGGAGCAGGAATTGGCACCTGGGTGCGGAGGGCTGGCTGGGTCTGAATTTTTCTGCTTCTCCTGCTCCCCAAGGAGTGCAGCCCTGGTGGGCCCAATGGTTCCTGTGGAGTGGGGAGCTGGGTGCTGTGGTGTCTCCAGCACCCACCCCAGA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8996595 211 +  13868332 AGGCTGCCAGGCACCCC------------TGGGGACACCACGGGGGACAGGGCCCTGTGTGTGGAGGCGTCCGGAACAGGAATTGGCACCTGGGTGCGGACGGCTGGCTGGGTCTGAATTTTTCTGCTTCTCCTGCTCCCCGAGGAGTGTGGCCCTGGTGGGCCCAATGGTTCCTGTGGAGTGGGGAGCTGGGTGCTGTGGTGTCTCCAGCACCCACCCCAAA
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114471474 211 + 115148730 AGGCTGCCAGGCACTCC------------TGGGGACACCACAGGGGACAGGGCCCTGTGCATGGAGGCGTCTGGAACAGTAATCAGCACCTGGGTGCGGAGGGCTGGCTGGGTCTGAATTTTTCTGCTTCTCCTGCTCCCTGAGGGGTGCAGCCCTGGTGGGACCAATGGTTCCTGTGGAGTGGGGAGCTGGGTGCTGTGGTGTCTCCAGCACCCAGCCCAGA
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr5                  43288138 220 -  75399963 ACACTGCCTGGCACCCCCAGGTATGGAGTTGCGGACACCATAGGGGACAGGGCCCTGTGTGTGGAGGCATTGGGAACAGGATATGGCACCTGGGTGGGGAGGGTTGGCTGGGTCTGAG--TTTCTGCTGCTCCTGCTCCCCGAGGAGTGCAACCC-AGTTGGCCCAGCAGTTCCTGTGGAGTGGGGAGCTGGGGGCTGTGGCGTCTCCAACACCCACACCATG
i chlSab2.chr5                 C 0 C 0
e gorGor3.chr9                  49295112 1013 + 121947112 I
e papAnu2.JH685018                 81007 562 -    139415 M

a score=371187.000000
s hg38.chr14_KI270725v1_random     26137 326 +    172810 CCCCAGTTCCCAGACAGCTTGGGCCAAAAGGAGAGGCTGGACTTTGGAGGGTGGGTGTGAGTGCCTTTGCTGAAACTGGCCCCTGCCACCCAGTGGCTGGCATGACAAGTTGAGGCTCTAACCCTTCCACTCCTCACAACTTCCtctaggcttttctggctttgcccgcccagctgctccgtgccaggaag---aggaggagacacctagagcctgcaacaccatggctcgcctcgctgcaggtggatggcagtgacggagactgcagtgcgccagagcggtaggagagcggccgcgctaggagggcaggcggctgcaggcagggttgg
s panTro4.chrUn_GL393527          109599 326 +    341619 CCCCAGTTCCTGGCGAGCTTGGGCCAAAAGGAGAGGCTGGACTTTGGAGGGTGGGTGTGAGTGCCTTTGTTGAAACTGGCCCCTGCCACCCAGTGGCCAGCATGACAAGTTGAGGCTCTAACCCTTCCACCCCTCACATATTCCtctagacatttctggctttgcccgcccagctgctccatgccaggagg---aggaggagacacctagagcctgcgacaccacgactcgcctcgctgcgggtgggtggcagcgacggagactgaagtgtgccagagcggtaggagagCGGTCGCTCTAGGAGGGCAGGCAGCTGCAGCCAGGGTTGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8996806 326 +  13868332 CCCCAGTTCCCGGCCAGCTTGGGCCAAAAGGAGAGGCTGGACTTTGGAGTGTGGATGTGAGTGCCTTTGCTGAAACTGGCCCCTGCCACCCAGTGGCCAGCATTACAAGTTGAGGCTCTAACCCTTCCACCCCTCACATCTTCCtctaggcttttctggctttgcccacccagctgctctgtgccaggagg---aggaggagacacctagagcctgcgacaccacggctcacctcgctgtgggtgggtggcagcaacggagagtgcagtgcgctggagcagtaggagagcggccgcgctaggagggcaggcggctgcagccatggttag
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114471685 329 + 115148730 CCCCAGTTCCTGGCCAGCTTTGGCCAAAAGGAGAGGCTGGACTTTGGAGGGTGGGTGTGAGTGTGTGTTCTGAAACTGGCCCCTGCTACCCAGTGGCTGGCATGACAAGTTGAGGCTCTAACCTTTCCACCCTTCGCATCTTAttctaggctcctctggctttgcccgcccagctgctccgtgccaggaggagcagaaggagacacctagggcttgcgacaacatggctcaccttgctgcgggtgggtggcagcgacggagactgcattgcgccggagtggtaggagagtggctgcgctaggaggacacgtggctgcagccagggttgg
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 81569 326 -    139415 CTCCAGTTCCTGGCCAGCTTGGGCCAAAAGGAGAGGCTGGACTTTGGAGGATGGGTGTGAGTGCCTTTGCTGAAACTGCCCCTTGCCACCCAGTGGCTGGCATGACAAGGTGAGGCTCTAACGCTACCACCCCTTGCATCTTCCTCTAGGCGTTTCTGGCTTTGCCCACCCAACTGCTCCatgccaggagg---aggaggaaacaccTGGAGCTTGTGACACTGTGGCTCACTTCACTGCAGCTTGGTGGTGGTAACGGAGACTGCAGCACGCCGGAGCAGTAGAAGGGCAGCCATGCTAGGAGGGCAGGTGTCTGTGGCCAGGGCTGA
i papAnu2.JH685018             M 562 I 62
s chlSab2.chr5                  43288358 325 -  75399963 CCCCAGTTCCTGGCCAGTGTGGGTCAAAAGGAGAGGCTGAACTTTGGAGGGTGGGTGTGAGTGCCTTTGCTGAAACTGGCCCCTGCCACCCAGTGGCTGGCATGACAAGGTGAGGCTCTAACGCTACCACCCC-TGCATCTTCCtctaggcttttctggttttgcccacccaactgctccatgccaggagg---aggtggaaacacctggagcctgcgacaccatggctcgcctcactgtggcttggtggtggcgacagagactgcagtgtgctggagtggtaggagggcagccacgctaggagggcaggtggctgtggccagggctga
i chlSab2.chr5                 C 0 I 68
e gorGor3.chr9                  49295112 1013 + 121947112 I

a score=16412.000000
s hg38.chr14_KI270725v1_random     26463 23 +    172810 gagTCAGGCTTACAGCGATGGAT
s panTro4.chrUn_GL393527          109925 23 +    341619 GGGTCAGGCTTACAGTGATGGAC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8997132 23 +  13868332 gggtcaggttTACAGCGATGGAC
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472014 23 + 115148730 gggtcagGCTTACAGCAATGGAC
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 81957 23 -    139415 GAGGCAGGCCTACAGTGGTGGCC
i papAnu2.JH685018             I 62 C 0
e gorGor3.chr9                  49295112 1013 + 121947112 I
e chlSab2.chr5                  43288683 68 -  75399963 I

a score=93559.000000
s hg38.chr14_KI270725v1_random     26486 90 +    172810 GGGCTGCAGCAGTGGCCAGGTAGTAGGAGCCTTGTAGGGAGGGCTGGTGCATTGGCAATGGGCCTGGCTTTGCCCTGCGCCTGCCGTGGA
s panTro4.chrUn_GL393527          109948 70 +    341619 GGGCTGCAGCAGTGGCCAGGTGGTAGGAGCATTGTATGGAGGGCTGGTGCATTGGCAATGGGCCTGGCTT--------------------
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8997155 90 +  13868332 GGGCTGCAGCAGTGGCCAGGTGGTAGGAGCCTTGTAAGGAGGGCTGGTGCATTGGCAATGGGCCTGGCTTTTCCCTGCCCCTGCCGTGGA
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472037 90 + 115148730 TGGCTGCAGCAGTGGCCAGGTGGTAGGAGCCTTATAGGGAGGGCCGGTGCATtggcaatgggactggctttgccctgcccctgccgtgga
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 81980 90 -    139415 AGGCTGCAGCAGTCGCCAGGTGGTAGGAGCCTTATAGGGAGAACCGGTGAATTGGCAATGGACCTGGCTCTGCCTTGCCCCTGCCATGGA
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43288751 90 -  75399963 GGCCTACAGCAGTGGCCAGGAGGTAGGAGCCTTGTAGGGAGGGTCAGTGAATtggcaatgggcctgactctgccttgcacctgccatgga
i chlSab2.chr5                 I 68 C 0
e gorGor3.chr9                  49295112 1013 + 121947112 I

a score=58049.000000
s hg38.chr14_KI270725v1_random     26576 54 +    172810 TCTGGCCCTGTACTGCCCTG--CCTTGCCCTGTACCTGCCCTACTGTTACCTGGAC
s panTro4.chrUn_GL393527          110018 41 +    341619 -------------tgccctg--ccttgccctgtacctgccctgctgttacctggac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8997245 54 +  13868332 TCTGgccctgtactgccctg--ccttgccctgtacctgccctactgttatctggac
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472127 54 + 115148730 tctggccctgtactgccctg--ccttgccctgtacctgccctactgttacctggac
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 82070 49 -    139415 CCTGGCCATGTACTGCCCTG-------CCCTGGACCTGCCCTACCGTTATGTTGAC
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43288841 56 -  75399963 cctggccctgtactgccccgcccctgcccctggacctgccctaccgttacctggac
i chlSab2.chr5                 C 0 C 0
s saiBol1.JH378296                154209 41 -   2409723 tctggcccttctctg----g--ccttgccctgtccctgctctgccat---------
i saiBol1.JH378296             N 0 C 0
e gorGor3.chr9                  49295112 1013 + 121947112 I

a score=4011.000000
s hg38.chr14_KI270725v1_random     26630 2 +    172810 TG
s panTro4.chrUn_GL393527          110059 2 +    341619 tg
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49296125 2 + 121947112 tg
i gorGor3.chr9                 I 1013 I 309
s ponAbe2.chr2a_random           8997299 2 +  13868332 tg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472181 2 + 115148730 tg
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 82119 2 -    139415 TG
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43288897 2 -  75399963 tg
i chlSab2.chr5                 C 0 C 0
e saiBol1.JH378296                154250 0 -   2409723 C

a score=130989.000000
s hg38.chr14_KI270725v1_random     26632 102 +    172810 TCTCGGCCCTGTCCTGCTCTGGTCCCATCCTGACC-CTGTCTTGGCCCTG-TGCTACCCTGTCCCTGCCCTGGTCTTGCCCTGGCA----CTGGCCCTGCCCTGAACC
s panTro4.chrUn_GL393527          110061 102 +    341619 tcttggccctgtcctgctctggtcccatcctgacc-ctgtcttggccctg-tgctaccctgtccctgccctggtcttgccctggca----ctggccctgccctgAACC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8997301 102 +  13868332 tctcggccctgtcctgctctggtcccatcctgacc-ctgtcttggtcctg-tgctaccctgtccctgccctgctcttgccctggcg----ctggccctgccctgaacc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472183 101 + 115148730 -tcctgctctggtcccatctggtcccatcctgacc-ctgtcttggccctg-tgctaccctgtccctgccctggttttgccttggca----ctggccctgccctgaacc
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 82121 102 -    139415 TCTCAGCCCTGCACTGCTCTGACCCCATCCTGGCC-TGGTCTTGGCCCTG-TGCTACTCTGTCCTtgccctggtcctgcccttgta----ctggcccttccctggctc
i papAnu2.JH685018             C 0 I 18
s chlSab2.chr5                  43288899 102 -  75399963 tctcaaccctgccctgctctggccccaccctggcc-ctgtcttggccctg-tgctaccctgtccctgccctgattctgcccttgta----ctggcccttccctggctc
i chlSab2.chr5                 C 0 I 51
s saiBol1.JH378296                154250  92 -   2409723 --------------ggccctggccctgccctgACCGCTATCTT--CCCTGACGTTTCCTTGTCCCTGTACTACACTTGCCCTAGCATGCCCTACCCCTTCCCTGAACC
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49296127 309 + 121947112 I

a score=6581.000000
s hg38.chr14_KI270725v1_random     26734 23 +    172810 TGCACTGG------CCTGACCTtggctct
s panTro4.chrUn_GL393527          110163 23 +    341619 TGCACTGG------CCTGACCTtggctct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8997403 16 +  13868332 tgcactgg------cctgacct-------
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472284 16 + 115148730 tgcactgg------cctgggct-------
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 82241 29 -    139415 tgccctggaCCTTCCCTGATCCTATGCTT
i papAnu2.JH685018             I 18 I 4
s saiBol1.JH378296                154342 23 -   2409723 TGGGATGG------CCATGCCTTCACTAT
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49296127 309 + 121947112 I
e chlSab2.chr5                  43289001 51 -  75399963 I

a score=267327.000000
s hg38.chr14_KI270725v1_random     26757 184 +    172810 ggccctggctctggccctgCCCCTTGTCCTGACCCTGGTCCTGTCATGGCACTGGCCCTGCCAATGGTCATGGTCCTGCCCCTGTTCTGGCCCTGACCTGGCCTTGGAAATGTCCTG----------------GCCCTGCTTTGGCCCATCCCTGCCCTGGCCCCACCATGGGCCTGCCTGTTCTGCCCTCTCCTGGCAC
s panTro4.chrUn_GL393527          110186 184 +    341619 ggccctggctctggccctgCCCCTTGTCCTGCCCCTGGTCATGTCATGGCACTGGCCCTGCCAGTGGTCATGGTCCTAATCCTTTTCTGgccctgacctggccttggacatgtcctg----------------gtcctgctttggcccatccctgccctggccccaccatgggcctgcctgttctgccctctcctggcac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8997419 179 +  13868332 -----tggctctggccctgcccCTTGTCCTGACCCTGGTTCTGTCATGGCACTGACCCTGCCAATGGTCATGgtcctgctcctgttctggccctgacctggccttggacatgtcctg----------------gccctgctttggcccatccctgccctgacaccaccatgggcctgcctgtgctgccctctcctggcac
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472300 179 + 115148730 -----tggctctggcgctgccccttgtcctgaccctggtcctgtcatggcactggccctgccagtagtcatggtcctgctcctgttctggccctgacctggccttggacatgtcctg----------------gccctgctttgtcccatccctgccctggccccaccatgggcctgcctgttctgccctctcctggcac
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 82274 200 -    139415 GGCCTTGGCTCTGGCTCTGCCTCTTGTCCTGACCCTGGTCCTGCAATGGCACTGGCCCTGCCAATGCTCATGGTCATGGTCCTGTTCTGGCTCTGACCTGGACATGGACATGTGCTGGCCCTGATTTGTCCCAGCCCTGCCTTGGCccatccctgccctggccccaccaTGGTCCTGTCTGTTCTGCCCTCTCCTGGCAC
i papAnu2.JH685018             I 4 C 0
s chlSab2.chr5                  43289052 199 -  75399963 ggccttggctctggccctgcc-cttgtcctgaccctggtcgtgtcatggccctggccttgccaatggtcatggtcctggtcctgttctggctctgacctgtacttggacatgtcctggcccggatttgttgcagccctgccttggcccatccttgccctggccccaccatggtgctgcctgttctgccctctcctgacac
i chlSab2.chr5                 I 51 C 0
s saiBol1.JH378296                154365 188 -   2409723 ------------GACCCTGCCTTTTGTCCTCACCTTGGTCCTAATATGACCCCAGGCTTGCCAATGCTCACAGTCCTGGTCACATTCTAGCTGTGGCCTGTACTTGGACATGTCATGGGCCTGATTTGTCCTGTCCTTGCCTTGGCCCTTCCCTGCCATGTCTCCCCCATGGCCTTGCCTGTTCTCCTCTCTCCCAGGAC
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49296127 309 + 121947112 I

a score=2548.000000
s hg38.chr14_KI270725v1_random     26941 1 +    172810 T
s panTro4.chrUn_GL393527          110370 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49296436 1 + 121947112 t
i gorGor3.chr9                 I 309 I 1794
s ponAbe2.chr2a_random           8997598 1 +  13868332 t
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472479 1 + 115148730 t
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 82474 1 -    139415 T
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43289251 1 -  75399963 t
i chlSab2.chr5                 C 0 C 0
s saiBol1.JH378296                154553 1 -   2409723 T
i saiBol1.JH378296             C 0 C 0

a score=1665510.000000
s hg38.chr14_KI270725v1_random     26942 1344 +    172810 GACCTTGCCCTGTCATGGCCCAGTGGTGCCATTGCCCTGCCTTACCCTGCGCTGGTTGTGCCTTGGCCCCGCTTGGTGCTGGCCGCTCCCTGGACCTGCCCTGACCCTGCCTTGGCTTTTGCCCTGCCCTCACTATGGCCT----------------------------GGCCCTGGCCCTA---------------GCCCTGGTCCTGCCATATCCCTG------GCCCTGC------------------CCTTATCCAGGCCTTGCCCCTGCTGCTGCCCTGGCCCTGGCCTGGAACCTGGTCCTGTCAAGGACCTGCCCTGACTCTGCCATGGCCCTGGCCCTGCTCTGCCTTGTTCCTGGCCCTGACCCAGACCCAGACCCATTCCTGGCTCTGCACT------GGCCTTTCCCTGGCCCTGAGCTGGCAGTGGTCTGCCCCTGGTCTTGCCATCACCCTGCCCTGCTGTGCTCTGGATGTGTCATCACCCTGCCCTGC-----------CCCTACTCTGCCTTTGACCCTGCCCTGGCCTTACCTTGGCCCTCACCCTAGTCTTCGCTAGGCCCAGCACAGACCTGGCTCTG------ACCCTGGCCGAGCACAGACCTGGCTCTGACCCTGGCCCTGGTCTTTGTCCTGCCATAGCCTTGG-----------CCCTGAAGTGGACTTGGAGGTGTCCTGGCCCCGGTGTAACATGGCTCTTCTTTGGCCTGTCTC-----AGCCCTGCCCCTACCATCGCCTTGCCCTGCTCTGCCCTGCCCCAGTACTGACCCGGCCACGCTATTTCCCTGCCCTACCCTGCCTTGGCTGTGCCCTGGCTCGGTTCTGGCCCTG------GCCCCGGCCCTGCCCTGGACATGCTCTGACACTGCCTCAGCCTTGGCACTAGCCTGGCTCTTTCTTGGCATCAGCCCTGCTCTCTCTGTGGACTGGCTCTTGTCCTTTCCTGCCCTGGCCATACCATGCCCTGCCCTGCCCTgccctgactcagccctgact--------------------------------------cagccTTGGCCTTGGCATTGCCCCTGGTCCTGCCATATTTCTTGCCCTGTCCCTACCCTAGCCTTGGCCCTGACCCTTACCTTGCTGTGGCCCTGCCCTTGCCCTAACGCAGCCCCTGGTCCTGTCATGGCCCTGCCCTGGACCT-------GTCCTGGCCCTGGTCCTTCCCTGCTTGAGACCTTGCCCTGGTTCTCCCCTGGCCCTGAC-----C----------CTGAAATGCCTGGCCCTACCCTGGCCTTGCACTGCTCTGGCCCTTGCCCTGACTCTGGTCCTGTCACTGACCTAGCCCCAGCCCTGTTGCTGGTCTTACCATGGCCCAGACCCTGCCTTGGCCCTGCCCTGACACTGTCCTGGACCCTGGCTGTGCCAAGAACCTGTACTGTCCTTGCCCTTGTTGTGCTCCTGCCCCGAACCTGGTCCTTCCCAggccatg
s panTro4.chrUn_GL393527          110371 1333 +    341619 gaccttgccctgtcatggcccagtggtgccattgccctgccttatgctgtgctgGTTGTGCCTTGGCCCCGCTTGGTGCTGGCCGCTCCCTGAACCTGCCCAGACCCTGCCTCGACTTTTGCCCTGCCCTCACTATGGcct----------------------------ggccctggcccta---------------gccctggtcctgccatatccctg------gccctgc------------------cctTATCCAGGCCCTGCCCCTGCTGCTGCCCTGGCTCTGGCCTGGAACCTGGTCCTGTCAAGGAcctgctctgactctgccatggccctggccctgctctgccttgttcctggccct------------gaccctttcctggctctgcact------ggcctttccgtgaccctcagctggcagtggtctgcccctggtcttgccatcaccctgccctgctgtgctctggatgtgtcatcaccctgccctgg-----------ccctactctgcctttgaccctgccctgGCCTTCCCTTGGCCCTCACCCTAGTCTTCGCTAGGCCCTGC-----TCTGGAGctg------gccct-----agcacagacctggccctgaccctggccctagtctttgtcctgccatagccctgg-----------ccctGAAGTGGACTTGGAGGCGTCCTGGTCCCGGCATAACATGgctctgcattggcctgtccc-----tgtcctgcccctaccatcgccttgccctgctctgccctgtcccagtactgacctggccatgcaatttccctgccctaccctgcattggctgtgccctggctcagttctggccctg------gccccggccctgccccgGACATGCTCTGACACTGCCTCAGCCTTGGCACTAGCCTGGCTCTTTCTTGGCATCAGCCCTGCTCTCTCTGTGGACCGGCTCTtgtcctgtcctgcactggccataccatgccctgccctgccctgccctgactcagccctggct---------------------------cagccctggcccagccttggccttggcattatccctggtcatgccatatttctttccctgtccctaccctggccttggccctgacccttaccttgctctggccctgcccttgccctaacgcagcccctggccctgtcatggccctgccctgggcct-------gtcctggctctggcccttcactgcttgagaccttgccctggttctcccctggccctgac-----c----------ctgaaatgcctggccctaccctggccttgcgctgctctggcccttgccctgactctggtcctgtcactggcctagccccagccctgttgctggtcttaccatggccctgaccctgccttggccctgccctgacactgtcctgggccctggcTGTGCCAAGATCCTGCACTGTCCTTGCCCTTGTTTTGCTCCTGCCCCAAAcctggtcctgcccaggccctg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8997599 1356 +  13868332 gaccttgtgctgtcatggcccagtggtgccattgccctgccttaccctgcgctgGTTGTGCCTTGGCCCCGCTTGGTGCTGGCCGCTCCCTGGGCCTGCCCTGACCCTGCCTTGGCTTTTGCCCTGCCCTCACTATGGcct----------------------------ggccctggcccta---------------gccctggtcctgccatatccctg------gtcctgc------------------ctttatccaggccctgcccctgctgctgccctggccctggcctggaacctggtcctgtcaaggacctgccctgactctgccatggccctggccctgctctgccttgttcctggccctgacccAGGCCCAGACCCTTTCGTGgctctgcact------ggcctttccctggccctgagctggcagtggtctgcccctggtcttgccatcaccctgccctgctgtgctctggatgtgtcatcaccctgccctgg-----------ccctactctgcctttgaccctgccctggccttaccttggccctcaccctagtctttgctaggccctgc-----tctgGAGCTG------Accct-----agcacagacctagccctgaccctggccctggtctttgccctgccatagccctgg-----------ccctGAAGTGGACGTGGAGGTGTCCTGGCCCGGGCGTAACATGgctctgcattggcctgtccc-----ttccctgcccctaccattgccttgccctgctctgccctatcccagtactgacccggccatgctatttccctgccctaccctgccttggctgtgccctggcttggttctggccctggccccagccccggccctgccctggacatgctctgacactgcctgagccttggcactagccTGGCTCTTTCTTGGCATCAGCCCTTCTCTCTCTGTAGACCGGCTCTtgtcctgtcctgcactggccataccatgccctgccctgccctggcctgactcagccctgactcagccctggcctgactcagccctgactcagccctggcccagccttggccttggcattgcccctggtcctgcgatatttcttgccctgtccctaccttggccttggccctgacccttaccttgctctggccctgcccttgccctaacacagc----------------------ccctggacct-------gtcctggccctggcccttccctgcttgagaccttgccctggttcttccctggccctgac-----c----------ctgaaatgcctggcccttccctggccttgcactgctctggcccttgccctgactctggtcctgtcactggcctagccccagccctgttgctggtcttaccatggcccagaccctgccttggccctgccctgaccctgtcctggaccccggctgtgccaagaacctgcactgtccttgcccttgttttgctcctgccccgaacctggtcctgcccaggccatg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114472480 1284 + 115148730 gaccttgcgctgtcattgcccagtggtgccattgccctgcgttaccctgtgctgcttgtgccttggccccgcttggtgctggctgctccctggacctgccctgaccctgccttggcttttgccctgccctcactatggcct----------------------------ggtcctggcccta---------------gctctggccctgccatatccctg------gccctgc------------------ccttatccaggccctgcccctgctgctgccctgtccctggcctggaacctggtcctgcgaaggacctgccctgactctgccatggccctggccctgctttgccttggtcctggcccagaccca------gaccctttcctgcctctg-----------------ccctggccctgagctggcagtggtctgcccctcatcttgccatcaccctgcccttctgtgctcttggtgtgtcatcactctgccctgg-----------ccctactctgcctttaaccctgccctggccttaccttggccctcaccctagccttcactaggccctgc-----tcaggacctg------gccct-----agaacagacctggccctgaccctggccctggtctttgtcctgccatagccctgg-----------ccctgaagtggacgtggaggtgtcctggccccagcgtcacatggctctgccttggcctgtccc-----tgccctgcccctaccatcacattgccctgctctgccctgt-----------cctggccatgccatttccctgctgtaccctgccttgtctgtgccttggctcagttctggccctc------gccccggccctgccctggacatgctctgacactgcctcagccttggccctagcctggctctttcttggcatcagccctgctctctctgtggaccggctcttgtcctgtcctgcactggccataccatgccctgccctgccctaccctgactcagtcctggcc--------------------------------------tagccctgaccttggcattgcccctggtcctgccatatttcttgccctgtccctaccctggccttggccctgaccctttccttgctctggccatgcccttgccctaacccagctgctggccctgtcatggccctg-------cct-------gtcctggccctggcccttccctgcttgagaccttgtcctggttctcccctggc------------------------------cctggccctaccctgaccttgcactgctctggcccttgccctgactatggtcctgtcactggcctagccccagccctgttgctggtctgaccatggcccagaccctgccttggtcctgccctgacactgtcctggtccctggctgtgtcaagaacctgcactgtccttgcccttgttttgcccctgccctgaacctgatcctgcccaggtcatg
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 82475 1339 -    139415 AACCTTGCCCTGTCATGGCCCAGTGA-GCCATTGCCCTGCCTTACCCTGCTCTGGTTTTGCCCTGGCCCCACCTGGCACTGGCCACTCCCTGGACCTGACCTGACCCTACCTTGGCTTTTGCCCT-CCCTCACTATGGCCTGGCTCTGGCCTTGTCCTGTCCCAgcccgggccctggccctg---------------accctggtcctgccatatccctg------gccctgg-----------------------------------ccctgctgctgccctggccctggcatggaacctgggcctgccgaggacctgcACTGACTCTGCCGTGGCCCTACCCCTGCTCTGCCTTGGTCCTGGCCCTGACTCA------GAGCATTTCCTGTCTCTGCCCTTGCCCCAGCCTTCACGCGG-CCTGAGCTGGCAGTGGTCTGCCCCTGGTCTTGGCACCACCCTGCCCTGCCGTGCTCTGGCTGTGTCATCACCCTGCCCTGGTTCTGCTTTCTCCCTACTCTGGCTTTCACTCTGCCCTAACCCTACTTTGGCCCTCACCCTA---TTGGTTAGGCCCTGC-----TCTGGACCTGGCCCTAGCCCT-----AGCCCAGACCTGACCCTGGCTCT-CCCTTTGTCCTGCCAAAGCCCTGGCCCTGG-----------TCCTGAACTAGACTTGGAGGTGTcctggccctgaagtgaccctggcctgcctaagcctgtccc-----tgccctgcccctgccatcgccttgccctgttctgcctTGTCCCAGCACGGACCTGGCCATGCCATTGTCCTGCCCTACCCTGCCTTGGCCATGCCGTGGCTTGGTTCTGGCCCTG------GCCCC------ACCCTGGACATACCCTGACACTGCTTCAGCCTTTGCACTATTGTGGCTCTGCCTTGGCATTGGCCCTGCTCTCTCTGTGGTCTGGCTCTAGTCCTGTCCTGTACTGGCCATACCATGCCCTGC----------CCTGACTCAGCCATGGCT--------------------------------------CAGCCCTGGCTTTGGCGTTGCCCCTGGTCCTGCCATATTTCTGGCCCTGTCCCTACCTTGGCCTTGGA-----------CCtggcccttaccctgccctggccctaacgaagcccttggccctgtcatggccctgccttggccct-------ctcctggccctggcccttccctgCTTGAGATCTTACCCTGGTTCTGCCCTGGCCCTGACCCTGTC----CTGACACTGAAATGCCTGGCCCTATCCTGGCCTTGCACTGCTCTGGCCCTTGCCCTGACTCTGGCCCTGTCACTGTCCTAGCCCCAGCCTGGTCACAAGTCTTACCATGgcccagaccctgccttgaccctgccctgaccctgTACTAGACCCTGGCTGTGCCAAGAACTTGCACTGTCATTGCCCTTGTTTTGCTCCTACCCTGAACCTGGTCCTGCCCAAGCCATG
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43289252 1380 -  75399963 gactttgccctgtcatggctcagtggtgccattg----------ccctgctctggttgtgccctgatcccacttggcactggccgctccctggatctgccctgaccctgccttggtttttgccctgctctcacgatggcctggctctggccctgtcctggcccagcccgggccctggccctg---------------accctggtcctgccatatccctg------gccctggccctggccctggccctgctcttatccaggccctgcccctgctgctgccctggccctggcctggaacctggctctgccagggacctaaccggactctgccatggccctggccctgctctgccttggtcctagccctgaccca------gagcatttcctggctctgccctcaccctggcctttccctgg-cctgagctggcagtggtctgcccctggtcttggcaccaccctgccctgccatgcgctggctgtgtcatcaccctgccctggttctgccttctccctactctggctttgaccctgccctagccctaccttggccctcaccctagccttggctaggcactgc-----tctggacctg------cccct-----agcccagacctggccctggctctggcttttgtcctgccactgccctggccctggccctgccctcaccctgaactagacttggaggtgtcctggccctgaggtgacctggccctgcctaggcctgtccctgccttgccccgcccccgtcatcgccttgccctgttctgccctgtcctggcactgacctggacataccattgccctgccctaccctgccttggccatgccctgactcggttctggccctg------gcccc------gccctggacatgccctgacactgcctcagccttggcactagcctggctcggccttggcattggccctgccctctctgtggactgggtttggttgtgtcctgcactggccataccatgccttgc----------cctgactcagtcatggct--------------------------------------cagccctggacttggcgttgcccttggtcctgccatatttccggccctgtccctaccctggtcctggc------tgtttccctgctctgtccctgccctggccctaacgcagcccctggtcctgtcatggccctgacctggacct-------gtcctggccctggcccttccctgcttgagaccttaccctggttctgccctggccctgac-----c----ctgacactgaaatgcctggccctaccctcaccttgcactgctctgatccttgccctgactctggccctatcactgtcctagccccagccctgtcactggtcttaccacagcccagagcctgccttggccctgccctgatcctgtcctggtctctggctgtgccaagaaactgcactgtccttgcccttgtttttctcctgccctgaacctggtcctacccaggccatg
i chlSab2.chr5                 C 0 C 0
s saiBol1.JH378296                154554 1122 -   2409723 GACCTGGCCCTGCCATGGC-CAGTAGTGTCATTTCCCTGGTCTATCGTACCCTGGTTGTGCCCTGGAT----------CTGGTCCCTCCCTGGACCCGTCCTAACCCTACCTTGGCTTTTTCTCTACTCTCTATATGGCAT----------------------------GGCTCTGGATCTGCCCTACCACGGCCTTGCCCTGTCCCTGCTATATCCCTGACTGTAACCCTGC------------------TCTTATCCAGGCCTG------------ACCGTGAcccttccctggtccctggccctgccaaggacctgccctgactctgccatggccctggtcctgctctgtt--------------------------------------------------------------------------------gtggtatagcccttgtcttga-accacacttccctgctgtgccctggctgtgtcttcaccctgccctagccctgcccttggcctactctggcttagaccctgacctggccctaccttggcccttaacctagctttgactaggccctgc-----------gctg------gccct-----ggcccagacctgac-ctgaccttggtcctaCACTTTGTCTTGCAATAGCCCTGGAGCTGACACAGTCCTGGACTGGACTTGGAGGTATCCTGGCCCTGAATTGACCTGGCCCAGCATTGGCTTGTCTC-----TGCCCTGGCCCTACCATCATCTTTCCCTGTTCTGTCCTGCCTTGGCACTGAAATGACACTGCAACATCCCAGTCATACCA----------ATGCCCTGACATA-TCCTGGTCCTG------GTCCC------ACCCTTGATATTCACTGACCCTGTCTCAGCCCTGGCCCTA-----------CCTTAGCATTGGCCCTGCATTCTCTATGAACCAGCTCTGGCCATGTCCTGC-------------------------------CATGACCCTACCTTGTCA--------------------------------------CAACCCTGG-----------------------------------CCCTGCCCCCAACCTGGCCTTGGTTCAGATCCTTACCCTACTCAGGACCTTCCATGGCCTT-------CCCCT----CTGTTATGGTCCAGCCCTGGCACTAACCTAGATCCTGGTCCTGGCCCTGCCCCACTTGAGGCCTTACCCTGGTTCTTCCCTGGACCTGAT-----CCTGTCTGACCCTGAAATGCCTAGCATTACCCTGGCCTTGCACTGCTCTG------GCCCTGAATCTGGCACTGTCACTGTCCTCGCCCCAGCCCAGTTGCTGGTGATGCTAtg----------------------gccctgaccctgtcctggaccctctctgtgccataaa----------------ccttgt-----------------cctgtccctaccctagccat-
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49296437 1794 + 121947112 I

a score=3000.000000
s hg38.chr14_KI270725v1_random     28286 3 +    172810 gcc
s panTro4.chrUn_GL393527          111704 3 +    341619 gcc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8998955 3 +  13868332 gcc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114473764 3 + 115148730 gcc
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr5                  43290632 3 -  75399963 gcc
i chlSab2.chr5                 C 0 I 3383
e gorGor3.chr9                  49296437 1794 + 121947112 I
e saiBol1.JH378296                155676 0 -   2409723 C
e papAnu2.JH685018                 83814 0 -    139415 C

a score=116578.000000
s hg38.chr14_KI270725v1_random     28289 183 +    172810 gtggccctgg---------------------------------------ccctggccctgcccaggtcttggcactggcctggccctgccctgccctggccctATGCTTTCCTGGC--------------------CCTGCCTTGGCCCTAGCCTGGCTTTGACCCTGCCCTGGCCCTACCTTGGCCTTCACCCTAGCCTTACCTGGGCACTGTGTTTGACCTGGCTATAGCACAGACCTGG
s panTro4.chrUn_GL393527          111707 213 +    341619 ctggccctgc-----------------------------cctggctgttccctggccctgcccaggtcttggcactggcctggccctgccctgccttggccctatgctttcctggccctgccttgccagccctggtcctgccttggccctagcctggctttgaccctgccctggccctaccttggccttcaccctagccttaCCTGGGCACTGTGTTGGACCTGGCCATAGCACAGACCTGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8998958 242 +  13868332 atggccctggccctggccctggccctgccctggctctgccctggctgttccctggccctgcccaggtcttggcactggcctggccctgacctgccttggtcctatgctttcctggccctgccttgccggccctggccctgccttggccctagcctggctttgaccctgccctggccctaccttggcctTCACCCTAGCCTTACCTGGGCACTGTGTTGGACTTGGCCATAGCACAGACCTTG
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114473767 225 + 115148730 atggccctgg-----------------ccctggccctgccttggctgttcccttgccctgcccaggtcttggcactggcctggccctgccctggcttggtcctatgctttcctcaccctgccttgcccgccatggccctgccttggccctagcctggctttgaccctgccctggccccattttggccttcactctagcctcacctgggcactgtgttggacctggccatagcacagacctgg
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378296                155676 137 -   2409723 ------------------------------------------------tccctgtccttgtctttgtcttggcaccaccctggtcctgcc----------------------------------------------cctgccttggccctaccctaggtttgaccctaccctggcca-----------tcactctagacttggcTGGGCCCTGTCATGGACCTGACCACAGCACAGAcccag
i saiBol1.JH378296             C 0 I 886
e gorGor3.chr9                  49296437 1794 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814   0 -    139415 C

a score=9995.000000
s hg38.chr14_KI270725v1_random     28472 32 +    172810 TTGTGGCCCTGGCCCTGCCGTGGCCCTGTCCC
s panTro4.chrUn_GL393527          111920 32 +    341619 TTGTGGccctggccctgccatggccctgtccc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999200 32 +  13868332 TTGTGGccctggccctgccatggccctgtccc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114473992 13 + 115148730 ttgtggccctggc-------------------
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49296437 1794 + 121947112 I
e saiBol1.JH378296                155813 886 -   2409723 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C

a score=3979.000000
s hg38.chr14_KI270725v1_random     28504 18 +    172810 AGA--CCCTAGCCCT---GCCAG
s panTro4.chrUn_GL393527          111952 18 +    341619 aga--ccctagccct---gccag
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999232 20 +  13868332 agaccccctagccct---gccag
i ponAbe2.chr2a_random         C 0 C 0
s saiBol1.JH378356                176015 19 -    254446 ----TATTTAGCCATTTAGCCAG
i saiBol1.JH378356             n 886 I 55
e gorGor3.chr9                  49296437 1794 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C
e nomLeu3.chr7b                114474005  0 + 115148730 C

a score=30449.000000
s hg38.chr14_KI270725v1_random     28522 60 +    172810 GTACCTGTCCTGGCCCAGCTCTGGGCCTGGCTTTGTCCCTGGTTCTTAGATGACCCTGGC
s panTro4.chrUn_GL393527          111970 60 +    341619 gtacctgtcctggccctgctctgggcctggctttgtccctggttcttagatgaccctggc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999252 60 +  13868332 gtacttgtcctggccctgctctgggcctggctttgtccctggttcttagatgaccctggc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474005 52 + 115148730 --------cctggccctgctctggacctggctttgtccctggttcttagatgaccctggc
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49296437 1794 + 121947112 I
e saiBol1.JH378356                176034 55 -    254446 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C

a score=2000.000000
s hg38.chr14_KI270725v1_random     28582 2 +    172810 CC
s panTro4.chrUn_GL393527          112030 2 +    341619 cc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999312 2 +  13868332 cc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474057 2 + 115148730 cc
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378356                176089 2 -    254446 cc
i saiBol1.JH378356             I 55 I 46
e gorGor3.chr9                  49296437 1794 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814 0 -    139415 C

a score=-594.000000
s hg38.chr14_KI270725v1_random     28584 2 +    172810 TG------
s panTro4.chrUn_GL393527          112032 2 +    341619 tg------
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999314 2 +  13868332 tg------
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474059 8 + 115148730 tgcccctg
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49296437 1794 + 121947112 I
e saiBol1.JH378356                176091 46 -    254446 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814 0 -    139415 C

a score=1000.000000
s hg38.chr14_KI270725v1_random     28586 1 +    172810 C
s panTro4.chrUn_GL393527          112034 1 +    341619 c
i panTro4.chrUn_GL393527       C 0 C 0
s panPan1.JH650491              11558237 1 -  11593801 C
i panPan1.JH650491             N 0 N 0
s ponAbe2.chr2a_random           8999316 1 +  13868332 c
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474067 1 + 115148730 c
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49296437 1794 + 121947112 I
e saiBol1.JH378356                176091 46 -    254446 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814 0 -    139415 C

a score=19212.000000
s hg38.chr14_KI270725v1_random     28587 36 +    172810 CCCTGCCCTTGCCCTTGCCATGGCACTGGCCTTGGA
s panTro4.chrUn_GL393527          112035 36 +    341619 ccctgcccttgtccttgccctggcactggccttgga
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999317 36 +  13868332 ccctgcccttgcccttgccctggcactggccttgga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474068 36 + 115148730 ccctgcccctgcccttaccctggcactggccttgga
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49296437 1794 + 121947112 I
e saiBol1.JH378356                176091 46 -    254446 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C

a score=5233.000000
s hg38.chr14_KI270725v1_random     28623 9 +    172810 CATGTCCGT
s panTro4.chrUn_GL393527          112071 9 +    341619 catgtccgt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999353 9 +  13868332 gatgtccat
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474104 9 + 115148730 catgtccgt
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378356                176137 9 -    254446 cttttccat
i saiBol1.JH378356             I 46 n 46
e gorGor3.chr9                  49296437 1794 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814 0 -    139415 C

a score=1844.000000
s hg38.chr14_KI270725v1_random     28632 14 +    172810 GGTCCTAACCCTGG
s panTro4.chrUn_GL393527          112080 14 +    341619 ggtcctaaccctgg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999362 14 +  13868332 gttcctaatcctgg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474113  3 + 115148730 ggt-----------
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49296437 1794 + 121947112 I
e saiBol1.JH378356                176146 46 -    254446 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C

a score=24974.000000
s hg38.chr14_KI270725v1_random     28646 43 +    172810 CCCTGCCCTGGAGCTGCCACTGTCT----TGGCCCTGCCCTGGCTCT
s panTro4.chrUn_GL393527          112094 41 +    341619 ccctgccctggagctgccactgtct----ttgccctgccctggct--
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           8999376 43 +  13868332 ccctgccctggagctgccactgtct----tggccctgccctggctct
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474116 37 + 115148730 ------cctggagctgccactgtct----tggccctgccctggctct
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378296                156699 42 -   2409723 CCCTGCCCTG-----GCCACTACCTTCCCTGGCCTTTCCATGTCTCT
i saiBol1.JH378296             I 886 I 10
e gorGor3.chr9                  49296437 1794 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C

a score=7319.000000
s hg38.chr14_KI270725v1_random     28689 16 +    172810 GGCCCTGCCCCAGCCC
s panTro4.chrUn_GL393527          112135  1 +    341619 ---------------c
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49298231 16 + 121947112 ggccctgccccggccc
i gorGor3.chr9                 I 1794 C 0
s ponAbe2.chr2a_random           8999419 16 +  13868332 ggccctgccctgaccc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474153 16 + 115148730 ggccctgccccggccc
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378296                156751 15 -   2409723 Ggccctgccattccc-
i saiBol1.JH378296             I 10 C 0
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C

a score=422.000000
s hg38.chr14_KI270725v1_random     28705 1 +    172810 T
s panTro4.chrUn_GL393527          112136 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49298247 1 + 121947112 c
i gorGor3.chr9                 C 0 I 742
s nomLeu3.chr7b                114474169 1 + 115148730 t
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378296                156766 1 -   2409723 t
i saiBol1.JH378296             C 0 C 0
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814 0 -    139415 C
e ponAbe2.chr2a_random           8999435 0 +  13868332 C

a score=13705.000000
s hg38.chr14_KI270725v1_random     28706 43 +    172810 GGCCCTGCCCCGGCCCCAGCCATAGACCTGCCCTGGTTGGTCG
s panTro4.chrUn_GL393527          112137 43 +    341619 ggccctgccctggccccagccatagacctgccctggttggtca
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr7b                114474170 43 + 115148730 ggccctgccccggccccagccatagacctgccctggtaggtcg
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378296                156767 29 -   2409723 ggttctgccttggccct-------gaccttctctgg-------
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49298248 742 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C
e ponAbe2.chr2a_random           8999435  0 +  13868332 C

a score=180.000000
s hg38.chr14_KI270725v1_random     28749 1 +    172810 T
s panTro4.chrUn_GL393527          112180 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr7b                114474213 1 + 115148730 t
i nomLeu3.chr7b                C 0 C 0
s nasLar1.chrUn_JMHX01002093v1        57 1 -      3245 c
i nasLar1.chrUn_JMHX01002093v1 N 0 N 0
e gorGor3.chr9                  49298248 742 + 121947112 I
e saiBol1.JH378296                156796 0 -   2409723 C
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814 0 -    139415 C
e ponAbe2.chr2a_random           8999435 0 +  13868332 C

a score=21753.000000
s hg38.chr14_KI270725v1_random     28750 66 +    172810 TCCCTACCTTAACCCTGTGCTACCCTGGGCCTGCTCCACCCTGCCCTGGCCCTGCCCTCCCTTTGG
s panTro4.chrUn_GL393527          112181 65 +    341619 gccctaccttaaccctgtgcta-cctgggcctgctccaccctgccctggccctgccctccctttgg
i panTro4.chrUn_GL393527       C 0 I 1122
s nomLeu3.chr7b                114474214 66 + 115148730 gccctgcgttaaccctgtgctaccctgggcctgctccaccctgccctggccctgccctccctttgg
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378296                156796 55 -   2409723 -ccctatcttggtcctgtgatatcctagtcctgcctca----accctgacattgccctta------
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49298248 742 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814  0 -    139415 C
e ponAbe2.chr2a_random           8999435  0 +  13868332 C

a score=16437.000000
s hg38.chr14_KI270725v1_random     28816 158 +    172810 GCCTGCTCTGACCCCGCCTTGGCCCTC---ACACTGGCCCTAGCACAGACCTGGTCCTAT---------------------CTGTGGCCTTGCTCTGGCATTGACCCCTGTTCCTGACCCTGGTCCTGCCATGGCCCTGGCCCTGCCAATGA----------------------------------CCCTGGCCCTGAACTGGCCCTGCCCTGA-CC
s nomLeu3.chr7b                114474280 190 + 115148730 ccctgccctgaccctgccttggccctc---acactggccgtagcacagacctggtcccat---------------------ctgtgg-cttggcccggcattgacccctgctcctgaccctggtcccgccatggccctggccctgccaatgatcctgacagccctggccctggcc--ctgtcttggccctggccatgaactggccctgccctgaccc
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378296                156851 205 -   2409723 gcctatcctgg-cctgacatggccctccctacactggccatatc-cagccctggtcttacactaccctgGCTCTAATTCTGATGTGgccctgcccttgccttagccc--accccaggccctgcccttctgtgggccctg---ctgtccatgtccctgccatctttgtccctgccctgccatc----ccctggctctgtcctcaccctacactgt-cc
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49298248 742 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814   0 -    139415 C
e ponAbe2.chr2a_random           8999435   0 +  13868332 C
e panTro4.chrUn_GL393527          112246 1122 +    341619 I

a score=39902.000000
s hg38.chr14_KI270725v1_random     28974 142 +    172810 TGGCCCTGAAGTGGATTTGCAGGTGTCTTGTCCATGATTTAACCTGGTCTTACCATGGCCCTGTCCCTCCCCTGGCTCTGTCCTGGTCTTGTGCTGACCCTGA-----CCCAGACCTTGGCCCTGCCCCAGCCTTGTCCTTGACCTG
s ponAbe2.chr2a_random           8999435 141 +  13868332 tggccctGAAGTGGATTTGCAGGTGTCTTGTCCCTGATTTAActtggccctaccatggccctgtccctcccc-ggctctgtcctggtcttgtgctgaccctga-----cccagaccttgtccctgccccagccttgtcctagacctg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474470 141 + 115148730 tagccctgaagtggatttgcaggtgtcttgtccctgatttaacctgcccctaccatgg-cttgtccctcccctggctctgtcctggtcttgtgctgaccatga-----ctcagaccttggccctgccccagccttgtcctagacctg
i nomLeu3.chr7b                C 0 C 0
s saiBol1.JH378296                157056 112 -   2409723 -----ctg-----------------------ccttgctttgcttctgtgctaccctagccctggctt------gcctaggtcctgagcttg-gctaaccttgccttttcccaagccttgacccttccatgtccctgtccttgccctg
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49298248 742 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e papAnu2.JH685018                 83814   0 -    139415 C
e panTro4.chrUn_GL393527          112246 1122 +    341619 I

a score=96458.000000
s hg38.chr14_KI270725v1_random     29116 235 +    172810 -----GCCATGCCCCTGCCTCTGCCCTGGACC-GGCACTGGCACTGGCATG-----------GACCCTGGCCCTG------GCCCTTCACTACTTAAGGCCATACCCTGGCCCAGCCCTGGTCCTGACCCTGTCCTGGCCCTA---------------------------------------------------------------------------------------------------------------------------------GCCCCGTTGCTGGTCCTGCCATG---------------------GCCCTTGTCCTGACATTGCCCTTTCCTGGTTCTGGCCCTGGCCCTGTC-----------------------------------------CCAGCCCTG----CTCTGGCCCTGGTCTGAACCCTGGCCCTGCAATAG
s ponAbe2.chr2a_random           8999576 310 +  13868332 -----gccatggccctgcctctgccctggacc-ggtgctggcactggcatg-----------gaccctggccctg------gcccttagctacttaaggccataccctggcccagccctggtcctgaccctgtcctggccctaATTTGGCC------------------------------TGGCT------------------------CTACCCTGGCATGCTATTctggccctagccctgaccctgttcctgtccctgtcctggccctagccccattgctggtcctgccatg---------------------gcccttgtcctgacattgccccttcctggtcctggccctggccctgtc-----------------------------------------ccagccctg----ctctggccctggtctgaaccctggccctGCAATGG
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474611 304 + 115148730 -----gccatggccctgcccctgccctggacc-agcactggcactggcatg-----------gaccctggccctg------gcccttcacaactgaaggccataccctggcccagccctggtcctgaccatgtcctggccctaatttggcc------------------------------tggctctaccctgccatgctattctgccccta------------------------------gccctgactctgtccctttcctggccctagccccattgctggtcctgccgtg---------------------gcccttgtcctgatattgccctttcctggtcctggccctggccctgcc-----------------------------------------ccggccctt----ctctggccctggtctgaaccctggccctgcaatgg
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 83814 372 -    139415 -----Gtcctgcccctccccctgccctggatt-gaccctggcactggcatg-----------gaccctggccctggcccttgccctTCACTGCTTAAGGCCATAACCTGGCCCAGTCCTGGGCCCCACCCCGTCCTGGCCATGATTTGTCCTGGCCCTAACCTGACATGCTATTCTGACCATA------------------------------------------------------------GTCCTGACCCTGTCGCTGTCCTGGCCCTAGCCATGTTGCTGGTCCTGCCTTGGGCTTGGTCTTGCTGGGCTTTgccctggtcctgaaattgcccttccctggtcctggccctggccctggcccggccccggccccagccctggccccggccctggccctgcgccagcccta----atctggccctgatctgaatcctggccctgCAATGG
i papAnu2.JH685018             C 0 C 0
s saiBol1.JH378296                157168 276 -   2409723 GTTTTTCCCTGTTTCTGGACCTCTCCTGGTCCTGGTCTTGGTCTTGTCATGTCCCTAGCTGTGACCCTACCCTTG------TTTTTTCTCTA------GTCATCACCCAGCCCG---------TTTGCCCTCATCCAGCCCTGACTGGGCA------------------------------TT------------------------------------------------------------GTTCTACCCACTTCCCTGGCCCTACCCTAGCCCTGTC-TTGGCCATGTGCT----------------------ACCCTGTCCCTTCAATAGACCTGTGCTGGCCATGGCTTGATTCCTG-------------------------------------------CTGCTCCTGCTGACTCTGATCCTGCCATGGCACCAGGCCTGCCAGTGG
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49298248 742 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e panTro4.chrUn_GL393527          112246 1122 +    341619 I

a score=-2210.000000
s hg38.chr14_KI270725v1_random     29351 1 +    172810 -A
s gorGor3.chr9                  49298990 1 + 121947112 -c
i gorGor3.chr9                 I 742 I 196
s ponAbe2.chr2a_random           8999886 1 +  13868332 -A
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474915 1 + 115148730 -a
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84186 1 -    139415 -A
i papAnu2.JH685018             C 0 C 0
s saiBol1.JH378296                157444 1 -   2409723 T-
i saiBol1.JH378296             C 0 C 0
e chlSab2.chr5                  43290635 3383 -  75399963 I
e panTro4.chrUn_GL393527          112246 1122 +    341619 I

a score=13943.000000
s hg38.chr14_KI270725v1_random     29352 28 +    172810 -CCTGCCTTGGTCCTGCCCACACCCTGGC-----
s ponAbe2.chr2a_random           8999887 28 +  13868332 -CCTgccttggtcctccccagaccctggc-----
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114474916 28 + 115148730 -cctgccttggccctgcccagaccctggc-----
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84187 28 -    139415 -CCTGCTTTATCCCTGCCCAGACCCTGGC-----
i papAnu2.JH685018             C 0 C 0
s saiBol1.JH378296                157445 34 -   2409723 CACTGTCCTGGTCCTATTCTGGTCCTCACCTGGT
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49298991 196 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I
e panTro4.chrUn_GL393527          112246 1122 +    341619 I

a score=149909.000000
s hg38.chr14_KI270725v1_random     29380 168 +    172810 TCTGGCCCTACCTCTGCCCTGGCCATACCCTTGCCCTGGCCTG-----GACCCCAGTCCTGGTCCTTGTC-----CTGCCCCAGCCATGGCC-----------------CTGGCCCTGCCCTGCCTGTGCCCTGTTCTATCCTGGGCTGGCCCTGCCATGACCTGGTCTTGCCATTGCCCTGCCCTAGCCTGCCA--
s panTro4.chrUn_GL393527          113368 167 +    341619 TCTGgccctacctctgccctggccatacccttgccctggcctg-----gaccccagtcctggtccttgtc-----ctgccccagccatggcc-----------------ctggccctgccctgcctgtgccctgttctattctgggctggtcctgccatggcctgatcttgccattgccctgccctagcctgcc---
i panTro4.chrUn_GL393527       I 1122 C 0
s ponAbe2.chr2a_random           8999915 167 +  13868332 tctggccctacctctgccctggccacacacttcccctggcctg-----gaccccggtcctggtccttgtc-----ctgccccagccgtggcc-----------------ctGgccctgccctgcctgtgccctgttctatcctgggctggccctgccatagcctggtcttgccattgccctgccctagcctgcc---
i ponAbe2.chr2a_random         C 0 I 1
s nomLeu3.chr7b                114474944 150 + 115148730 tgtggctctacctcag-----------------ccctggcctg-----gaccccggtcctggtctctgtc-----ctgccccagccgtggcc-----------------ctggccctgccttgcctgtgccctgttctatcctgggcttgctctgccatggcctggtcttgccattgccctgccctagcctgcc---
i nomLeu3.chr7b                C 0 I 1
s papAnu2.JH685018                 84215 161 -    139415 TCTGGTCCTACCTCTGCCTTGGCCATACCCTTGCCCTGGCCTG-----GAC------CCTGGTCCTTATC-----CTTCCCCAGCCACGGCC-----------------CTGGCCCCACCCTGCCTGTGCCCTGTTCTGTCTTGGGCTGGCCCTGCCATGGCCTGGTCTTGTTATTGCCCTGCCCTAGCCTGCC---
i papAnu2.JH685018             C 0 I 1
s saiBol1.JH378296                157479 195 -   2409723 -CCTGCTCTTTCTTTGCTTTGGCCCCAAAATTGCCCTTTCCTGGTGCTGGTCCCAAGTCTGGCCCTTCTCTGGAGCTTCTCCGGGCATGGTCAGGAACCTGTGCCTTCATTGGAccagccctgcctttgtcctgtgctatcttggcctggctctgccttgttgcagcgctgacatggccctgccatggcctggc-cc
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49298991 196 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I

a score=10120.000000
s hg38.chr14_KI270725v1_random     29548 22 +    172810 TGCTTGTGCCCTAGATCTGCCC
s panTro4.chrUn_GL393527          113535  1 +    341619 ---------------------c
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49299187 22 + 121947112 tgcTTGTGCCCTAGATCTGCCT
i gorGor3.chr9                 I 196 I 2332
s ponAbe2.chr2a_random           9000083  7 +  13868332 tgcTTGT---------------
i ponAbe2.chr2a_random         I 1 C 0
s nomLeu3.chr7b                114475095 22 + 115148730 tgcttgtgccctagatctgccc
i nomLeu3.chr7b                I 1 C 0
s papAnu2.JH685018                 84377 22 -    139415 TGCTTGTGCCCTAGATCTGCCC
i papAnu2.JH685018             I 1 C 0
s saiBol1.JH378296                157674 22 -   2409723 ttccactgccctgaccctgccc
i saiBol1.JH378296             C 0 C 0
e chlSab2.chr5                  43290635 3383 -  75399963 I

a score=18776.000000
s hg38.chr14_KI270725v1_random     29570 52 +    172810 CGCTTGTGCCCTAGATCTG-----CCCCAGCCTTTGC----CCCTGTCTTGGTTCTAACCT
s panTro4.chrUn_GL393527          113536 51 +    341619 tgcTTGTGCCCTAGATCTG-----CCCCAGCCTTTGC----CC-TGTCTTTTTTCCAGCCT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000090 46 +  13868332 ------TTCCCTAGATCTG-----CCCCGGCCTTTGC----CCCTGTCTTGGTTCTAGCCT
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475117 30 + 115148730 ---------------------------tggcctttgc----ccctgtattggttctagcct
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84399 30 -    139415 ---------------------------TGGCCTTTGC----TCCTGTCTTGGTTCTAGCCA
i papAnu2.JH685018             C 0 C 0
s saiBol1.JH378296                157696 61 -   2409723 tagttgtgccctgtccCTGAATATCCTTGGTCCTTCCTTAGCTTTGTCTTTGATGTAACCC
i saiBol1.JH378296             C 0 C 0
e gorGor3.chr9                  49299209 2332 + 121947112 I
e chlSab2.chr5                  43290635 3383 -  75399963 I

a score=485043.000000
s hg38.chr14_KI270725v1_random     29622 377 +    172810 TGACTCAGCCCTGGACCTTCCCTGACCTTGCCTCAGCCCTGGCACT---------------------------AC--CCTGGCCTTGCCTTGGCATTTGCCCTACCCTCTCTATGGCCTGGCTGTGGTCCTGCCCTGCTCTGCTCTTGTTCTGTCCTGGCACAGCCCTGGCCCTG-----GCCGTGGCCCTG---CTG---TATCACTG---------GCTCTGGTCCTGCCCTTA---TGCA-------------GACCTGACCCTGCCACTGCCTTGGCTTTGGCCTGGACCTTGGCCATACAGTGACCCTG-----------------------CCATGACCCTTTCCTGGCCCTGG---CCTGGAACCTGGCCCTGCCA----------AGGACTCGCC----------CTGGCTCTGTCATGGCCCTGGCCCTTTCCTGGATTTGGATGTGTCCTGTCCCTTATTTGCCCCGGCCCTTCCCTG
s panTro4.chrUn_GL393527          113587 382 +    341619 TGACTCAGCCCTGGACATTCCCTGAccttgcctcagccctggcact---------------------------ac--cctggccttgccttggcatttgccctactctctctatggcctggctctggtcctgccctgctctgctcttgttctgtcctggcacagccctggccctg-----gccctggccctggccctgccatatcactg---------gctctggtcctgccctTA---TGCA-------------GGCCTGACCCTACC-CCGCCTTTGCTTTGGCCTGGACCTTGGCCATACAGTGACCCTG-----------------------CCATGACCCTTTCCTGGCCCTGG---CCTGGAACCTGGCCCTGCCA----------AGGACTCGCC----------CTGGCTCTGTCATGGCCCTGGCCCTTTCCTGGATTTGGATGTGTCCCATCCCTTATTTGCCCCGGCCCTTCCCTG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000136 347 +  13868332 TGACTCAGCCCTGGAACTTccctgaccttgcctcagccctggcact---------------------------ac--cctggccttgccttggcacttgccctgctctctgtatggcctggctctggccctgccctgctctgctcttgttctgtcctggcacagccctggccctg--------------------ccg---tatcactg---------gctctggtcctgccctta---caca-------------ggcctgaccctgcccctgccttggctttggcctgGACCTTGGCCATACAGTTACCCTG-----------------------CCATGACCCTTT---------------------CCTGGCCCTGCCA----------AGGACTCGCC----------CTGGCTCTGTCATGGCCCTGACCCTTTCCTGGATTTGGATGTGTCCTGTCCCTTATTTGCCCTGGCCCTTCCCTG
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475147 353 + 115148730 tgactcagccctggaccttccctgaccttgcctcagcactggcaat---------------------------ac--cctagacttgccttggcatttgccctactgtctctatggcctggctctggtcctgccctgctctgctcctgttctgtcctggcacagccctggccctg-----gccctg---------cca---tatcactg---------gctctggtcctgccctta---tgca-------------ggcctaacactgcccctgccttggctttggcctggaccttggccatacagtgaccctg-----------------------ccatgacccttt---------------------cctggccctgcca----------aggactcacc----------ctggctctgtcatggccctggccctTTCCTGGATTTGGATGTGTCCTGTCCCATATTTGCCCTGGCTCTTCCCTG
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84429 379 -    139415 TGACTCAGTCCTGGACTTCCTCTGACCTTGCCTCAGCCTTGGCACT---------------------------AC--CCTGGCCTTTCCTTGGCATTTGCCCTGCCCTCTCTACAGCGTGGCTCTGGTCCTGCCCTGTTCTGCTCTTGTTCTGTCCTGGCATAGCCCTGGCCTTG-----GCCCTG-CCCTGGTGCTGCCATATCTCTG---------GCCCTGG-TCTGCCCTTA---TGCA-------------GACCTGACCCTGCCCTTGCCCTGGC-TTGGCCTGGACCTTGACCATATAGTGACTCTT-----------------------CCATGACCcttccctggccctgg---cctggaacCTGG-CCTGCCA----------AAGACTCGCC----------CTGGCTCTGTCATGGCTATGGCCCTTTCTGGGACTTGGATGTGTCCGGTCCCTTATTTACCCTggcccttccctg
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43294018 383 -  75399963 TGACTCAGTcctggacctcctctgaccttgcctcagccttggcact---------------------------ac--cctggccttaccttggcatttgccctgccctctctatggtgtggctctggtcctgccctgttctgctcttgttctgtcctggcacagccctggccttg-----gccctgcccctggtgctgccatatccctg---------gccctggccctgccctca---tgca-------------gacctgaccctgcccttgccctggctttggcctggaccttggccatatggtgactctg-----------------------ccatgacccttccctggccctgg---cctgaaacctggccctgcca----------aagactcgcc----------ttggctctgtcatggccatggccctttcctggacttggacgtgtcctgtccctTATTTACCCTGGCCGTTCCCTG
i chlSab2.chr5                 I 3383 C 0
s saiBol1.JH378296                157757 478 -   2409723 TGACTCAGCCCTGGATTTTCCCTGACCCTGCCTCAGCCCCAGCACTTAGGATTCAGTGTCACTCAACCCTGGAACTACCTGGCCCTGCCTTGACActtgctctgccctctctatggcctggctctggtcctgcactg----gcccttgccctgtccctg----ggcctggccctatgtttgtccaggcactgac-ccgccatggccctgctcttctgtgctctggccttgccctcaacctgcactggtcctgttctaacctgactctgccttggccctggccctggccctg-ccttCTCTTTGAAGTTGCCCTGGTCTTACACCTTGTCACCTCTGTCCATGACCTGGTCCTGGccctgacctcctctgccctgtccctgccatgctgtgcccagtactttccctaaccgtttctagccctgcccctactatggccctcacctgcttttagccatgccctgtgctacctctgccctggcactacactg
i saiBol1.JH378296             C 0 N 0
e gorGor3.chr9                  49299209 2332 + 121947112 I

a score=27597.000000
s hg38.chr14_KI270725v1_random     29999 21 +    172810 GCTCTGCCATACCCCTTCTCT
s panTro4.chrUn_GL393527          113969 21 +    341619 GCTCTGCCATACCCCTTCTCT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000483 21 +  13868332 GCTCTGCCATACCCCTTCTct
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475500 21 + 115148730 GCTCTGCCATACCCCTTCTCT
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84808 21 -    139415 gctctgccctaCCTCTTCTCT
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43294401 21 -  75399963 GCTCTGCCCTACCTCTTCTCT
i chlSab2.chr5                 C 0 C 0
e gorGor3.chr9                  49299209 2332 + 121947112 I

a score=1314.000000
s hg38.chr14_KI270725v1_random     30020 1 +    172810 G
s panTro4.chrUn_GL393527          113990 1 +    341619 g
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000504 1 +  13868332 a
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475521 1 + 115148730 G
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84829 1 -    139415 G
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43294422 1 -  75399963 G
i chlSab2.chr5                 C 0 C 0
s rhiRox1.KN299446v1               14222 1 +    132174 g
i rhiRox1.KN299446v1           N 0 I 149
e gorGor3.chr9                  49299209 2332 + 121947112 I

a score=1988.000000
s hg38.chr14_KI270725v1_random     30021 5 +    172810 GGGTA
s panTro4.chrUn_GL393527          113991 5 +    341619 gggta
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000505 5 +  13868332 gggta
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475522 5 + 115148730 GGGTa
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84830 5 -    139415 TTCTA
i papAnu2.JH685018             C 0 I 8
s chlSab2.chr5                  43294423 5 -  75399963 TTCTA
i chlSab2.chr5                 C 0 I 15
e gorGor3.chr9                  49299209 2332 + 121947112 I
e rhiRox1.KN299446v1               14223 149 +    132174 I

a score=10372.000000
s hg38.chr14_KI270725v1_random     30026 29 +    172810 GGGCCAGGGTCAGGACCAGACCAGGGC-AG
s panTro4.chrUn_GL393527          113996 30 +    341619 gggccagggtcaggaccagggtagggccat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000510 29 +  13868332 ggaccagggtcaggaccagaccagggc-ag
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475527 29 + 115148730 gggccagggtcaggaccagaccagggc-ag
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84843  7 -    139415 GGGCCAG-----------------------
i papAnu2.JH685018             I 8 C 0
e gorGor3.chr9                  49299209 2332 + 121947112 I
e rhiRox1.KN299446v1               14223 149 +    132174 I
e chlSab2.chr5                  43294428 15 -  75399963 I

a score=93469.000000
s hg38.chr14_KI270725v1_random     30055 75 +    172810 GGTCAGGACCAGGGTAGGGCCATGGTAAGGCCTGAAGATGGGAAGGGCCAGGGCAGCGGCTGGACCAGGGAAGGG
s panTro4.chrUn_GL393527          114026 75 +    341619 ggtcaggaccagggtagggccatggtaaggcctgaagatgggaagggccagggcagcggcaggaccagggaaggg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000539 75 +  13868332 ggtcaggaccagggtagggccatggtaaggcctgaagatgggaagggccagggcagcggcaggaccagggaaggg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475556 75 + 115148730 ggtcaggaccagggtatggccatggtaaggcctgaagatgggaagggccagggcagcagcaggaccagtgaagga
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84850 75 -    139415 GGTCACGACCAGGATGGGGCCATGGTAAGACCTGGAGATGGGAAGGGCCAGGGTAGCAACAGGGCCATGGAGGGG
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43294443 75 -  75399963 ggtcaggaccagggtagggtcatggtaaggcctgaagatgggaagggccagggtagtgacagggccatggagggg
i chlSab2.chr5                 I 15 C 0
e gorGor3.chr9                  49299209 2332 + 121947112 I
e rhiRox1.KN299446v1               14223 149 +    132174 I

a score=6729.000000
s hg38.chr14_KI270725v1_random     30130 6 +    172810 TCAGGT
s panTro4.chrUn_GL393527          114101 6 +    341619 tcaggg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000614 6 +  13868332 tcaggg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475631 6 + 115148730 tcaggg
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84925 6 -    139415 TCAGGG
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43294518 6 -  75399963 tcggga
i chlSab2.chr5                 C 0 C 0
s nasLar1.chrUn_JMHX01010889v1      1432 6 -      1640 tcatat
i nasLar1.chrUn_JMHX01010889v1 N 0 N 0
e gorGor3.chr9                  49299209 2332 + 121947112 I
e rhiRox1.KN299446v1               14223 149 +    132174 I

a score=45226.000000
s hg38.chr14_KI270725v1_random     30136 45 +    172810 CCAGGGATGTAGTAGGACTAGGGGCAGAGCCAGCACT-----------AGGGCTGA
s panTro4.chrUn_GL393527          114107 45 +    341619 ccagggatgtggtaggactaggggcagagccagcact-----------agggcaga
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000620 45 +  13868332 ccagggatgtgttaggacttggggcagagccggcact-----------agggctga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475637 45 + 115148730 acagggatatggtaggactaggggcagagccggcact-----------agggctga
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84931 45 -    139415 CCGGGGATATGGTAGGACTAGAGACAGGGCCAGTGCt-----------agggcaga
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43294524 55 -  75399963 ccagggatatggtaggact-ggggcagcaccagcactagggctgagcgagggcagg
i chlSab2.chr5                 C 0 C 0
e gorGor3.chr9                  49299209 2332 + 121947112 I
e rhiRox1.KN299446v1               14223 149 +    132174 I

a score=18660.000000
s hg38.chr14_KI270725v1_random     30181 10 +    172810 GCCAGGGCAG
s panTro4.chrUn_GL393527          114152 10 +    341619 gccggggCAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000665 10 +  13868332 gccagggCCG
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475682 10 + 115148730 gccagggcag
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84976 10 -    139415 gccagggcag
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43294579 10 -  75399963 gccagggcag
i chlSab2.chr5                 C 0 C 0
s rhiRox1.KN299446v1               14372 10 +    132174 gccagggcAG
i rhiRox1.KN299446v1           I 149 N 0
e gorGor3.chr9                  49299209 2332 + 121947112 I

a score=1538795.000000
s hg38.chr14_KI270725v1_random     30191 1400 +    172810 AGCAGGAGAGATTACTTTAGGCTATTATGTAAAA-TTTTTATTTTAGATTTTTAAGATAACTATAGTAGTAGTAAT---GTCTA--TACTATGTTGTTTGTAATAGTAATAATATTTGTAGTA---A----TCACTAAATTTTAACTAATACTATCTTTGCTTCCAGTAGTGTTCTATGAGTATAATTTTATCAACATGTAAATATGTGAGGCAttgattctcacaataattctatgtgctaggtacttaaagcatctccattttccaaatgtaggaaa--------caggcataaagaagttaaatacttggccaGA---------ttactcctgtaatcccagcactttgggaggccaaggcaggcagatggcttgagctcaggagtttggaaccagcctgggcaacattgtgaaaccccatctctactaaaaatgcacaaaaaGAACTAA--------TTTAAGTTTCTTGTAGGATTCTGGTTATAAAACACTGGTCAAACACacagggcatggatagggcagggccagggacaaggtcaggccaggaaggGGCCAGGGCCAAGGCAGGGCCAGAGCTGGAATTGGAGGTGTCCTGGTC-TGATTtgccctgccccgacgttggcccagccctgctctggcacgtcctgtcatgccctgtccctggcctgagcattggccctgtccctgtcctgcttctggccctgccccggagttgaccaggcactgccatggcccagtcctg-cattgccctgccctcctctgccctggtgctaccatggccctgcttgggccctagctctgcctcgactctggacctgccctgactctgctcagccctggatctaccctgactctgccttggtgtt-gccctcccatctctatggcctggctctggccatgccttgcacaggccatgctctgccctgcatgccccagcctgggcccagccctcatcctaccatattcctgaccccagccatacccttgttctggccatgaccctgccatggccctctcctggcccttccttggtcctgccctgcccttccatgccctggccttgccctcaccctgcattggccctgcactggtcctgccctgccctggcactgccttggccccggccctgccttctccctggccttgcctttgccctgccctggcctgaccccaggcctaccgagtccatgaaatgaccctggacctgccttgccatcctctgtcctggccctgtattgtccccaccatgctctggtccagcacttgccctagccctgttgctagtcctgccactgctatggccctgctctgtttttggccatgcgctgtgctaccctagccctgccctgccttgg-----------ccttggccctaccatggccttctcctaccctggcctggccgtacactggccttttcta------------------------------------------------ccctggccttgcccttccct
s panTro4.chrUn_GL393527          114162 1390 +    341619 AGCAGGGGAGATTACATTAGGCTATTACGTAAAA-TTTTTATTTT------TTAAGATAACTATAGTAGTGGTAATAATGTCTA--TACTATGTTGTTTGTAATAGTAATAATATTTACAGTA---aataatcactaaattttaactaatactatctctgcttccagtactgttctatgagtataattttatcaatatgtaaatatgtgaggcattgattctcacaataattctatgtgctaggtacttaaagcatccccattttccaaatgtaggaaa--------caggcataaagaagttaaatacttggccaGA---------ttactcctgtaatcccagcactttgagaggccaaggcaggcagatggcttgagctcaggagtttggaaccagcctgggcaacattgtgaaaccccatctctactaaaaatgcacaaaaaGAGCTGA--------TTTAAGTTTCTTGTAGGATTCTGGTTATAAAACACTGGTCAAACACAcagggcatggatagggcagggccagggacaaggtcaggtcaggaaggggccagggccaaggcagggccagagctggacTTGGGGGtgtcctggtc-tgatttgccctgcccctacattggcccagccctgctctggcacttcctgtcatgccctgtccctggcctgaacattggctcttgccctgtcctgcttctggctctgcccCAGAGTTGACCAGGCACTGCCATGgcccagtcctg-cattgccctgccctcccctgccctgGTGctgccatggccctgcttgggccctagctctgcctcaactctggacctgccctgactctgctcagctctggatctaccctgactctgccttggtgtt-gccctcccatctctatggcctggctctggccctgccttgcacaggtcatgctctgccctgtgtgtcccagccagggcccagcccttgccctaccATATTCCTGACCCCAGTCATACCCTTGTTCTGGCCTTGACCCTGCTGTGGCACTCTCCTGGCCCTTCCTTGGTcctgccctgcccttccatgccctggccttgccctcaccctgca-----------ctagtcctgccctggcctggcagtgccttggccctggccctgccttctccctggctttgccctttccctgccctggcctgACCCCAGGCCTATCGAGTCCATGAAACGACCTTGGACCTGCCTTGCCATCATCTGTCTTGGCCCTGTATTGTCCCCACCATGCTCTGGTCCAGCACTTACCCTCTCCCTGTTGCTAGTTTTGCCACTGCTATGgccctgccctgtttttggccatgccctgtgctaccttagccctgccccaccttgg-----------ccttggccctaccatggccttttcctaccctggcctggctgtacactggccttttcta------------------------------------------------ccctggccttgcccttccct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9000675 1438 +  13868332 AGCAGGAGAGATTACATTAGGCTATTATGTAAAA-TTTTTATTTTAGATATTTTAGATAACTGTAGTAGTAGTAATAATGTCTA--TACTATGTTGTTTGTAATAGTAATAATATTTGCAGTA---AATAATTACTAAATTTTAACTAATACTATCTTTGCTTCCAGTAGTGTTCTATGAGTATAATTTTATCAATATGTAAATATGTGAGGCAttgattctcacaataattctatgtgctaggtacttaaagcatccccattttccaaatgtaggaaa--------caggcataaagaagttaaatacttggccaGA---------ttactcctgtaatcccagcactttgggaggccaaggcaggaagatggcttgagctcaggagtttggaaccagcctgggcaacattgtgaaaccccatctctactaaaaatgcataaaAAGAGCTGA--------TTTATGTTTCTTGTAAGATTCTGGTTATAAAA-ACTGGTCAAACACAcagggcatggatagggcagggccagggacaaggtcaggccaggaaggggccagggccaaggcagggccagagctggacTTGGAGGtgtcctggtc-tgatttgccctgccccaacgttggcccagccctgctctggcacttcctgtcatgccttgtccctggcctgagcattggccctggccctgtcctgcttctggccctgccccggggttgaccaggcactgccatggcccagtcctg-cattgccctgccctcctctgccctggcgctgccatggccctgCTTGGGCCCTAGCTCTGCCTGGACTCTGGAcctgccctgac----------------tctaccctgactcttccttggtgtt-gccctctcatctctatggcctggctctggccctgccttgcacaggccatgctctgccctgcgtgtcccagcctgggcccagccctggtcctaccatattcctgaccccagccgtacccttgttctgaacctgaccctgccctggctctctcctgGTCCTTCCTTGGTcctgccctgcccttccatgccctggccttgccctcaccctgcattggtcctgcactggtccttccctgccctggcactgccttggccccggccctgccttctccctggccttgcccttgccctgccctggcctgACCCCAGGCCTACCGAGTCCATGAAATGgccctggacctgccttgccatcgtctgtcctggccctgtattgtccccaccatgctctggtccagcgcttgccctggccctgttgctagtcctgccactgctatggccctgccctgTTTTTGGCCATGccctgtgctaccctagccctgccctgccttgg-----------ccttggccctaccatggccttctcctaccctggcctggccctacactggccttttctacgctggccttgccctgccctggccttgccctgccctggccttgccctgccctggtcttgccctgccct
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114475692 1392 + 115148730 agcaggAGAAATTACATTAGGCTATTATGTAAAACTTTTTATTTTAGATTTTTAAGATAACTATAGTAGTAGTAATAATGTCTA--TACTATGTTGTTTGTAATAGTAATAATATTTGCAGTA---AATAATCACTAAATTTTAACTAACACTGTCTTTGCTTCCAGTAGTGTTCTATGAGTATAATTTTATCAATATGTAAATATGTGAGGCAttgattctcacaataattctatatgctaggtacttaaagcatcccaattttccaaatgtaggaaa--------caggcataaagaagtgaaatacttggccagg---------ttaGTcctgtaatcccagcactttgggaagccaaggcaggcaaatggcttgagctgaggagtttgcaaccagcctgggcaacattgtgaaaccccgtctctactaaaaatgcccaaaaaGAGCTGA--------TTTAAGTGTCTTGTAGGATTCTGGTTCTAAAACACTGGTCAAACACAcagggcatggacagggcagggccagggacaagatcaggccaggaaggggccagggccaaggcagggccagAGCTGGACTTGGAGGTGTCCTGGCC-TGATTTGCCCAGCCCCAATGTtggcccagccctgctctggcacttcctgtcatgccgtgtccctggcctgagcattggccctggccctgtcctgcttctggccctgccttggagttgaccaggcactgccatggcccagtcctg-cattgccctgccctcttctgccctggtgctgccatggccctgtctgggccctagctctgcctcgactctggacctgccctgaccctgctcagccctggatctaccctgactctgccttggtgtt-gccctcccatctctatggcctggctctggccctgccttgcacaggccatgctctgccctgcgtgtcccagcctgggcccagccctgttcctaccatattcctggccccagccgtacacttgttctgaccctgaccttaccctggccctctcctggcccttccttggtcatgccctgaccttccatgccctggccttgcccttaccctgcattggccctgcactggtcctgccctgccctggcactgccttggcccctgccctgccttctccctggccttgcccttgccctgccctggcctgactccaggcctaccaagtccatgaaatagccctggacctgccttgccatcctctgtcctggccctgtattgtccctaccatgctctggtccagcacctgccctggccctgttgctagtcttaccactgctatggccctgccctgtttttggccatgccctgtgctaccctagccctgccctgccttgg-----------ccttggccctaccatggccttctcctacc----------------ctggccttttcta------------------------------------------------ccctggccttgccgttccct
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 84986 1393 -    139415 agcaggagagattatgttagaatattatttaaaa-ttttgtttttaggtttttaagaTAACTATAATAGTAACAATATTGTCTATGTACTATGTTATTTGCAATAGTAGCAATGTTTGTGATAGTTAGTAATAACTAAATTTTGACCAGTACTTTCTTTGTTTCTGGTACTATTCTAAGAGTATAGCTATATAAACGGGTATATATGTGAGGCATTAATTCTCACAGTAACTCTATATAGTAGGCACTTACAGCATCCCcattttccaaatgtaagaaaGGTTACATTTGGCATAAAGAGGTTAAATacttggcctggcacggtggttcactcctgtaatcccagcactttgggaggccaaggtgggtggacggcatgagctcaggagttcgggagcagcctgggcaacattgtgaaaccctgtctctactaaaaatgcagaaaaatagcTGAttagtttgtttaagttccttgtaggaTTCTAGTTATGAAACATTGGTTAAATACACAGAGCATGGACAGGGCAGGGTCAAAGATAAGGTCAGGCCAGGGAGGGGctagggccaaggcagggccagaGCTGGACTTGGAAGTGTCCTGGCCTTGATTTGCCCTGCTCCAACCTTGGCCTGTCTCTGCTCTGGCACTTCCTGCCATGCCCTGTCCCTGTCCTGAGCATTAGCTCTGGCCCTGTCCTGCTTCTGGCCCTGCCCTGGAGTTGACCAGGCATTGCCATGGCCCAGTCCTGCCATTGTCCTGCCCTCCTCTGCCCTGGTATTGTCATGGCCCTGCCTGGACCCTAGCCCTGCCTCAACTCTGGACCTGCCCTGACCCTGCTCAGCCCTGGAACTACCCTGACTCTGCCTTGGTGTTGGCCCTCCCCTCTCTATGGGCTGACTCTGGCCCTGCCTTGCACAGGCCATGCCCTGCGCTGTGCGTCCCAGCCTGGGCCCAGCCCTGGTTCTACCGTGTTCCTGGCCCTGGCTGTACCGTTGTCCTGGCCCTGAGCCTGCTCTGGCCTTGTCCTGGCCCTTCCTTGGTCCTTCCCTGCCCTTCCACGCCGCAGCCTTGCCCTCACCCTGCA-----------TTGGCCCTGCATtgccctggcactgccttggccctgg------cttctctctggccttgccctggccctacccttgcctgcccctgggcctaccctgTCCATGACATGGCCCTGGACCTGCCTTGTCATCCTCTGTTCTGGCCGTGTATTGTCCCCACCATGGCCTGGTCCAGTGCTTGCCCTGGCCCTGTGCCTAGTCCTGCCCCTGCTATAGTCCTGCCCTGCTTTTGGCCATGCCCTGTGCTACTCTAgccctgccctgacctggttctgacctgaccctggccctacc----------cctaccctggccttctcctaccct-------------------------------------------------------------------------------
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43294589 1409 -  75399963 agcaggAGAGATTACGTTAGAATATTATTCAAAA-ATTTTATTTTATATTTTTAAGataactataatagtagtaatactatgta--tactatgtaatgtgtaataataataacgatagtagtaGTTACtaataactagattttaaccagtactttctttgttcctggtactgtcttaggagtataactatataaatatgtatatatgtgaggtattaattctcacagtaactttatgtactaggtgcttatagcattcccattttccaaatgtaagaaa--------caggcataaagaggttaaataCTTggcctggcacagtggctcactcctgtaatcccagcactctgggaggccaagtctggtggatggcatgagctcaggagttcgggaccagcctgggcaacattgtgaaaccctgtctctactaaaaatgcagaaaaatagctgATTAGTTTGTTTAAGTTCCTTGTAGGATTCTGGTTATGAAACATTGGTGAAATACACAGGGCATGGATAGGGCAGGGCCAGAGATAAGGTCAGGCCAGGGAGGGGCCAGGGCCAAGGCAGGGCCAGAGCTGGACTTGAAAGTGTCCTGGCCTTGATTTgccctgccccaaccttggcctgtccctgctctggtgcttcctgccatggcctgtgcctgtcctgagcattagctctggccctgtccttcttctagccctgccctggagttgaccaggcactgctatggcccagtcctgccattgtcctgttgtcttctgccctggtattgtcgtggccctgcctgggtcctagccctgcctcgactctggacctgccctgaccctgctcagccctggaactaccctgactttgccttggtgttggccctcccttctctatggcctggctctggccctgccttgcacaggccatgccctgccctgtgcgtcctagcctgggcccagccctggttctaccatattcctggccctggccgtacccttgtcctggccctgaccctgccctggccctgtcctggcccttccttggtccttccctgcccttccatgccccggccttgccctca----------------------ccctgcactgccctggcactgccttggccctgg-----------ccctgccttctccctggccgtacccttgcctgcccctgggcctaccctgtccatggcatggccctggacctgccttgtcatcctctgttctggccatatattgaccccaccgtgccttgatccagcacttgccctggccctgtgcttagtcctgcccctgctatggccctgatctgcttttggccatgccctgtgctaccctaaccctgccctaacctggttctgacctggccttggccctaccctggccttctcctaccctggccttgccctaccctgttcttgccat-----------------------------------------------gccctggccttggctttgcct
i chlSab2.chr5                 C 0 I 50
e gorGor3.chr9                  49299209 2332 + 121947112 I

a score=42843.000000
s hg38.chr14_KI270725v1_random     31591 53 +    172810 ggtcttggcctgccctggc----cttgccctgcactggccttggctttgccttatcc
s panTro4.chrUn_GL393527          115552 53 +    341619 ggtcttgccctgccctggc----cttgccctgccctggcctTGGCTTTGCCTTATCC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9002113 53 +  13868332 ggccttgccctgccctggc----cttgccctgccctgGCCTTGGCTTTGCCTTATCC
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114477084 57 + 115148730 gatcttgccctgccctggccttgcttgccctgccctggctttggccttgccttatcc
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 86379 53 -    139415 ggccttgtcctactctggc----cttgccctgtcctggccttggctttgccttgtcc
i papAnu2.JH685018             C 0 C 0
e gorGor3.chr9                  49299209 2332 + 121947112 I
e chlSab2.chr5                  43295998 50 -  75399963 I

a score=166340.000000
s hg38.chr14_KI270725v1_random     31644 213 +    172810 tggtcctggttctgccctgaccctgg----------------------------------------------ccttgctctggccctgtccctggcccagccttgaccctgaccctggccctgacaatccccaggtctgacactggccatg-cttggccctggcccc-----tccttttgg----ccctgccctgtccctg------------------------ccttggccctgtgctatcttagtcctgccctggccctg----aact------cgccct-ggccctaccctcaccctaca
s panTro4.chrUn_GL393527          115605 281 +    341619 TGGTCCTGGTTCTGCCCTGGCCCTGCTGTTTCTCTAGATC-CTCTCTGGTTCTGCCTTCTccctggccctgcccttgctctggccctgtccctggctcagccttgaccctggccctggccctgacaatccccaggccccacactggccatg-cttggccctggcccc-----tccttt-gg----ccctgccctggccctgtgctatcttagtacagggccttggccttggccctgtgctatcttagtcctgccctggccctg----AACT------CACCCT-Ggccctaccctcaccctaca
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9002166 257 +  13868332 TGGTGCTGGTTctgccctttccctgcccttgctctggatc-ctctctggttctgccttctccctggccttgcccttgctct-gccctgtccctggcccagccttgaccctgaccctggccctgacaatccccaggtcccacactggccatg-cttggccctggcccc-----tccttt-gg----ccctgccctggccctg------------------------ccttggccctgagctatcttagtcctgccctggccctg----aact------cgccatgggccctaccctcaccctaca
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114477141 257 + 115148730 tggtcctggttctgccctggccttgcccttgctctggatc-ctctctgattctgccttctccctggccctgcccttgctttggccctgtccctggcccagccttgaccctggccctggccctgtcaatccccaggccccggactggccatg-ctcggccctggcccc-----tccttt-gg----cactgccctggccctg------------------------ccttggccctgtgctatcttagtcctgccctggccctg----aact------cgccct-ggccctaccctcaccctaca
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 86432 211 -    139415 tggtcctggttctgccttggccctgccctTGCTCTGGACC-----------------------------ATGTCTGGTTCT-GCCTtctccctggctctgcccttgcTCTGGCCCTGTCC----------------------CTGGCCCAGGCTTGGCCCTGGCCCTGATAGTGCTCA-GT----CCCCATGCTGGCCAtg------------------------ccttggcc-----cctccttggtcctgccctggccctgtggtatct------tgccct-ggccctgccctcacccttcc
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43296048 255 -  75399963 tggttctgccttctccctggtcctgcccttgctctggccctgtccctggcccaggcttgaccctggtcagcacctggccct-gtgttggtcctggcctggccctggccctgacagtgccc------------aggccccacactggccatgccttggccttggcccc-----tcctta-gtcctgccctgggcctgtgctc------------------------tcttattc-----ttcctctgacccttccttggtcctgtgctatcttagttctgccct-ggccctgccctcaccctccc
i chlSab2.chr5                 I 50 C 0
e gorGor3.chr9                  49299209 2332 + 121947112 I

a score=27547.000000
s hg38.chr14_KI270725v1_random     31857 16 +    172810 ctggccccgccctacc
s panTro4.chrUn_GL393527          115886 16 +    341619 ctggccctgccctacc
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49301541 16 + 121947112 ctggccccgccctacc
i gorGor3.chr9                 I 2332 I 292
s ponAbe2.chr2a_random           9002423 16 +  13868332 ctggccctgccctacc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114477398 16 + 115148730 ctgaccctgccctacc
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 86643 16 -    139415 ctggacctgccctccc
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43296303 16 -  75399963 ctggccctaccctacc
i chlSab2.chr5                 C 0 C 0

a score=317894.000000
s hg38.chr14_KI270725v1_random     31873 292 +    172810 ctggccttgccctgccctggccctgcctttggcctgctgtggctctggttctgcc-----------------ctggccttgcccttgccctggactctccctggccatgttttttccatggtccttctctggccttgcccttgccctgtcctctttctggtcctgccatgtttctggccctgccctgtccatgtcctggacctgactctggccctggatctccctgtccctgccctgccataccctggcctgttccttgctctacactgaccctgccctgccttggccctgtgctaccctagctctgcc
s panTro4.chrUn_GL393527          115902 292 +    341619 ctggtgttgccctgccctggccctgcctttggcctgccctggctctggttctgcc-----------------ctggccttgcccttgccctggaccctccctggccATGTTTTTACCATGGTCTTTCTCTGGCCTTGCCCTTTCCCTGTCCCCTTTCTGGTCCTGCCATGTTTCTGGCCCTGCCCTGTCCTTGTCCTGGACCTGACTCTGGCCCTGGACCTccctgtccctgccctgccataccctggcccattccttgctctacactgaacctgccctgccttggccctgtgctaccctagccctgcc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9002439 237 +  13868332 ------------------------------------------------------------------------ctggccttgcccttgccctggaccctccctggccatgttttctccatggtccttctctggccttgcccttgccttgtccCCTTTCGGGTACTGCCATGTTTCTGgccctgccctgtccatgtcctgtgcctgactctggccctggacctccctgtccctgccctgccataccctggcccgttccttgctctacactgaccctgccctgccttggccctctgctaccctagccctgcc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114477414 291 + 115148730 ctggccttgccctgccctggccctgcctttggcctgccctggctctggttctgcc-----------------ctggccttgcccttgccctggaccctccttggccatgtttactccgtggtccttctctggccttgcccttgccctgtcccctttctggtcctgccatgtttctggacctgccctgtccatgccctggacctggctctggccctggacct-cctgtccctgccctgccataccctggccggttccttgctctacactgaccctgccctgccttggccctgtgctaccctagccctgcc
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 86659 309 -    139415 ctggccttgccctgccctggccctgcctttggcctgccctggctctgcttctgccctggccctgcccttgctctggctctgcccttgccctggTACCTCCCTGGCCATGCTTTTTGTCTAGGTCTTCTCTGGCCTTGCCCTTGCCCTGGCCCCTTTCTGGTCCTGACATATTTCTGGCCCTGCCCTGTCCATGTCCTGGACCTGGCTCTGGCCCTGAActtccctgtccctgccctgccaCACCCTGGCCTAGTCCTTGCTCTACACTGGCCttgccctgccttggccctgtgCTACCCTAGCCCTGCC
i papAnu2.JH685018             C 0 C 0
s chlSab2.chr5                  43296319 304 -  75399963 ctggccctgccctgccttggccctgcctttggcctgccctggctctggttctgccttggccctacccttgccctggccctgcccttgccctggtccctccctggtcatgcttttttcctggtccttctgtggccttgcccttgccctggcccctttctggtcctgtcatgtttctgaccctgcaccgtccatgtcctggaacttgctctggctctggacttccctgtcccagccctgccacacctgggcctagtccttgctctaca-----cttgccttgccttggccctgtgctaccctagccctgcc
i chlSab2.chr5                 C 0 C 0
e gorGor3.chr9                  49301557 292 + 121947112 I

a score=4365.000000
s hg38.chr14_KI270725v1_random     32165 3 +    172810 ctg
s panTro4.chrUn_GL393527          116194 3 +    341619 ctg
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49301849 3 + 121947112 ctg
i gorGor3.chr9                 I 292 C 0
s ponAbe2.chr2a_random           9002676 3 +  13868332 ctg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114477705 3 + 115148730 ctg
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr5                  43296623 3 -  75399963 ctg
i chlSab2.chr5                 C 0 N 0
e papAnu2.JH685018                 86968 0 -    139415 C

a score=2476.000000
s hg38.chr14_KI270725v1_random     32168 3 +    172810 acc
s panTro4.chrUn_GL393527          116197 3 +    341619 gcc
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49301852 3 + 121947112 gcc
i gorGor3.chr9                 C 0 I 1331
s ponAbe2.chr2a_random           9002679 3 +  13868332 gcc
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114477708 3 + 115148730 gcc
i nomLeu3.chr7b                C 0 C 0
e papAnu2.JH685018                 86968 0 -    139415 C

a score=120131.000000
s hg38.chr14_KI270725v1_random     32171 200 +    172810 ttctgctgaccctgatcctgccatggccc-tggccctgccatgtccctgtcctggccctggttctgcgctgcttctggccctagccttagtcctctcatgtccctggctgtgaccctgccc------------ctggtttttctctggccatgaccctgccc----------------------------cagttctgtcctatacctggccctgtctcagttctgtcctagccctggcct
s panTro4.chrUn_GL393527          116200 211 +    341619 tTCTGCTGGCCCTGATCCTGCCATGGCC--TGGCCCTGTCATGTCCCTTccctggccctggttctgccctacttctggccctggccttggtcctctcatgtccctggatgtgaccctgcccatgaccctgcccctggtttttctctggccatgaccctgccc----------------------------cggttctgttctatccctggccctgtctcagttctgtcctagccctggcct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9002682 226 +  13868332 ---tTCTGGCCGTGATCCTGCCATGGCCCTTGGCCCTGCCATTTCCCTGccctggccctggttctgccctgattctggccctggccttggtcctctcatgtccctggctgtgaccctgccc------------ctggtttttctctggccatgaccctgccccagttctgtcctagccctggccctgtctcagttctgtcctagccctggccctgtctcagttctgtcctagccctggcct
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114477711 199 + 115148730 gtttcctggccctgat-ctgccatggccc-ttgccctgccatggccccgccctggccctggttctgccctgcttctggccctggccttggtccggtcatgtccctggctgtgaccctgccc------------ctggtttttctctggccatgaccctgccc----------------------------cagttctgtcatatccctggccctgtctcagttctgtcctagccctggcct
i nomLeu3.chr7b                C 0 C 0
s papAnu2.JH685018                 86968 155 -    139415 -----CTGGCTCTGGTTCTGCCCTACTTC-Tggccctgt----------------------------------------cctggccctggTCCGGTCATGTGCCTGGCTGTGATCCTGTTC------------CTGGTTTTTCCCTGGCAGTGACTCTGCCC----------------------------CAGTTCTGCCCTGGTCCTGGCCCTGACCCGGTTCTGGTCCTGTCCTGGCCT
i papAnu2.JH685018             C 0 N 0
e gorGor3.chr9                  49301855 1331 + 121947112 I

a score=520920.000000
s hg38.chr14_KI270725v1_random     32371 1127 +    172810 TTCACAGTACTTTATGCCTAGTAAGGGCTCCATGGTGTCTGTGAGTTGAATGTTGTGTTCATAGTATCTGCCAAAACAGAAAGAAAAAAA-CGAAATATTTTGATAAGAAGTTAAAGCTTTGTATATAATATGCCTTGAATTGTAAGT---------------------------GCCTGTTATTAGTTGTATTACATATAGGTCATGGTTTTGTACACATAACTCCAAACCATTGATACTGTTAAAAGAATATATGAATATATGAAAGAATGTGTAAACGTAAGAATGTATCAGTATCTAATGACCTTTCCAAATTAATTTTTATTTTTAGCTCTATTAGATTTTTCTCAGTGTAACAAATGTTTATTCCTATGTAATTAAGGGCGTATTTCCTGTCCAGAATATTCATATTACCTAATTGAAAATTATATGATACAAAAATATAATACTATTTTTAggccaggcatggtggctcatacctgtaatcccaacattttgagaggccaagtttggagaatcatttgagtccaggagttgaccagcctgggcaacatagtgagaccttgtctttat--------------------------------------------taaataaataaataaaTAAATAggttgggcactgtggctcatatctgtcatcccagcattttgggttgccaatgcaggaggattgcttgagcccaggagtttgagaccagcctgggcagaatagcaagactccatctctacaaataataaaatattaaccaggtgtggtggtgcacacctggggtcccagctacctgggaggctaagatgggaggtttgctcgaggttgcagtgaactgtgaatgcaccactgcattccagcctaggccacagaacaggaccttgtctataaataaagaaataagtaaaaatataaataaaaataagtaaaaataaatataagtaaatataaatataaatacatataaatataaaaatgcatacatgaaaagaaacaatTTTTAAATTTAACATCACTGAGGGCATCCTATCCATTTCATTTCATGATTCCATCACATCATTTCACTTAGatgaaatgataagatgacttgagatgagatgaaatgatgagatgaaatgacaaaatgatga-------------------------------------gatgagatgagaagatgagatgaaattttgagatgaaatggtgagtagaa
s panTro4.chrUn_GL393527          116411 1178 +    341619 tTCACAGTACTTTATGCTTAGTAAGGGCTCCATAGTGTCTGTGAGTTGAATGTTGTGTTCATAGTATCTGCCAAAACAGAAAGAAAAAAAACAAAATCTGATGATGAGAAGTTAAAGCTTTGTATATAATATGCCTTGAATTGTAAGT---------------------------GCTTGTTATTAGTTGTATTACATATAGGTCATGGTTTTGTACACATAACTCCAAACCATTGATACTGTTAAAAGAATATATGACTATATGAAAGAATGTATAAACGTAAGAATGTATGAGTATCTAATGACCTCTCCAAATTAATTTTGATTTTTAGCTCTATTAGATTTTTCTTAGTATAACAAATGTTTATTCCTATGTAATTAAGGGCATATTTCCTGTACAGAATATTCATATTACCTAATTGAAAATTATATAATGCAAAAATATAATACTATTTTTAggccaggcatggtggctcttacctgtaatcccaacattttgagaggccaagtttgaagaatcatttgagtccaggagttgaccagcctgggcaacatagtgagaccttttctttaT----------------------------taaataaataaataaataaataaataaataaataaataggttgggcaccgtggctcatatctgtaatcccagcattttgggttgccaaggcaggaggattgcttgagcccaggagtttgagaccagcctgggcagcatagcaagactccgtctctacaaataataaaatattaaccaggtgtggtggtgtgcacctcgggtcccagctacctgggaggctaaggtgggaggtttgctcgaggttgcagtgaactgtgaatgcaccactgcattccagcctaggccacagaacaggaccttgtctataaataaataagta---aaaaaTataattaaaaataagtaaaaagaaatataagtaaatatatatataaatacatataaatataaaaatgaatacatgaaaacaaacaaTTTTTAAATTTAACATCACTGAGGGCATCCTATCCATTTCATTTCATGATTCCATTACATCATTTCACTTAGATGAAATGATAAGATGGCTtgagacgagatgaaatgatgagattaaatgatgaaatgatgagatgaaatgatgaaatgatgagatgaaatgatgaaatgatgagatgaaatgatgagatgaaattttgagatgaaatgGTGAGTAGAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9002908 1125 +  13868332 tTCAGAGTACTTTATGCTTAGTAAGGGCTCCATAGTGTCTGTGAGTTAAATGTTGTGCTCATAATATCTGCCAAAACAGAAAGAAAAAAACCAAAATCTGATGATGAGAAGTTAAAGCTTTGTGTATAATATGCCTTGAATTGTAAGC---------------------------ACCTGTTATTAGTTGTATTACATATAGGTCAGGGTTTTGTACACATAACTCCAAACCATTGATACTGTTAAAAGAATATATGAATATATGAAAAAATGTATAAACGTAAGAATGTATGAGTATCTAATGACCTTTCCAAATTAATTTTTATTTTTAGCTCTATTAGATTTTTCTCAGTGTAACAAATGTTTATTCCTATGTAATTAGGGGCATATTTCCTTTACAGAATATTCATATTACCTAATTGAAAATTATATGATACAAAAATATAATACTATTTTTAggccaggcatggcggctcatacctgtaatcccaacattttgagagg-caagtttggagaatcatttgagtccaggagttgaccagcctgggcaatacagtgagaccttatccttat------------------------taaataaataaataaataaataaataaataaataaataaataggttgggcaatgtggctcatatctgtcatcccagcattttgggttgccaaggcaggaggattgcttgagcccaggagtttgagaccagcctgggcagcatagcaagactccatctctacaaataataaaatattaaccaggtgtggtggtgtgcacctggggtcccagctacct-ggaggctaaggtgggaggtttgcttgaggctgcagtgaactgtgactgcaccactgcattccagcctaggccacagaacaggaccttgtctataaataaagaaataagtaaaaatagaaataaaaataagtagaaagaaatataagtaaatataaatataaatacatataaatataaaaatgaaTGCATTAAAACAAACAATTTTTAAATTTAACATCACTGAGGGCATCCTATCCATTTCATTTCATGATTCCATTACATCATTTCACTTAGatgaaatgataagatgacttgagatgagatgaaatgacgaaat-------------------------------------------------------gatgagat---aagatgagatgaaattttgagatgaaatggtgagtagaa
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114477910 1119 + 115148730 TTCACAGTACTTTATGCTTAGTAAGGGCTCCATAGTGTCTGTGAGTTGAATGTTGTGTTCATAGTATCTGCCAAAACAGAAAGAAAAAAAACAAAATCTGATAATGAGAAGTTAAAGCTTTGTATATAATATTCCTTGAATTGTAATtattagttgtattacttatcagttattagcctgtcattagttgtattaCATATAGTTCCTGGTTTTGTACACATAATTTCAAACCATTGATACTGTTAAAAGAATATATGAATATATGAAAGAATGTGTAAACATAAGAATGTAGGAGTATTTAACGACCTTTCCAAATTAATTTTT-CTTTTAGCTCTATTAGATTTTTCTCAGTGTAAAAAATGTTTATGCCTATGTAATTAAGGGCATATGTCCTGTACAGAATATTCATATTACCTAATTGAAAATTATATAACACAAACATATAATACTATTTTTAggccaggcatcgtggctcatacctgtaatcccaacattttgagaggctacgtttggagaatcattaga---------------------ggcaacatagtgagaccttgtctttaTtaaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataggttgggcactgtggctcatgtctgtaatccca--------------------------attgcttgagcccaggagtttgagaccagcctgggcagcatagcaagcctccatctctacaaataataaa---------aggtgtggtggtgtgcacctggggtcccagctacctggaaggctgaggtggcaggtttgctcgaggctgcagtgaactgtgaatgcaccactgcattccagcctaggccacagaacaggaccttgtctataaataaagaaataagtaaaaatataaataaaaataagtaaaatgaaatataagtaa------atataaatacatataaatataaaaatgaatacatgaaaacaaacaatTTTTAAATTTAACATCACTGAGGGCATCCTATCCATTTCATTTGATGATTCCATTACATCATTTCAGTTAGatgaaatgatcagatgacttgatatgagatgaaatgatgagatgaaatgatgaaat------------------------------------------gatgagat---gagatgagatgaagttttgagatgaaatgg---------
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49301855 1331 + 121947112 I

a score=1692.000000
s hg38.chr14_KI270725v1_random     33498 3 +    172810 atg
s panTro4.chrUn_GL393527          117589 3 +    341619 ATG
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303186 3 + 121947112 ATG
i gorGor3.chr9                 I 1331 I 101
s ponAbe2.chr2a_random           9004033 3 +  13868332 atg
i ponAbe2.chr2a_random         C 0 C 0
e nomLeu3.chr7b                114479029 0 + 115148730 C

a score=35757.000000
s hg38.chr14_KI270725v1_random     33501 104 +    172810 atgagatgaaattatgagacgaaatgacaaaattgaaaagaaattgaaaggagatgagatgagttaaaatga--gatgaaatgatgagatga---tggatgaaatgatg
s panTro4.chrUn_GL393527          117592 109 +    341619 atgagatgaaatgatgagacaaaatgacaaaattgaaaagaaattgaaaggagatgagacgaaatgagatgatggacgaaatgatgagatgaaacgagatgaaatgatg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004036  94 +  13868332 atgagatgaaatgaTGAGACAAAATGAGAAAATTAAaaaggaattgaaaggagatgagatga------------gatgaaatgatgagatga---tggatgaaatgatg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479029  77 + 115148730 --------------tgagacgaaatgacaaatttgaaaagaaattgaaaggagatgaaatga------------gatgaa---atgagatga---tggatgaaatgatg
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303189 101 + 121947112 I

a score=-289.000000
s hg38.chr14_KI270725v1_random     33605 7 +    172810 agataaa
s panTro4.chrUn_GL393527          117701 2 +    341619 ag-----
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303290 7 + 121947112 agatgaa
i gorGor3.chr9                 I 101 I 318
s ponAbe2.chr2a_random           9004130 7 +  13868332 agatgaa
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479106 5 + 115148730 aaatg--
i nomLeu3.chr7b                C 0 C 0

a score=1184.000000
s hg38.chr14_KI270725v1_random     33612 5 +    172810 acgag
s ponAbe2.chr2a_random           9004137 5 +  13868332 acgag
i ponAbe2.chr2a_random         C 0 I 16
s nomLeu3.chr7b                114479111 5 + 115148730 atgag
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303297 318 + 121947112 I
e panTro4.chrUn_GL393527          117703 0 +    341619 C

a score=298.000000
s hg38.chr14_KI270725v1_random     33617 5 +    172810 ccatg
s panTro4.chrUn_GL393527          117703 3 +    341619 --aag
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr7b                114479116 3 + 115148730 --atg
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303297 318 + 121947112 I
e ponAbe2.chr2a_random           9004142 16 +  13868332 I

a score=107064.000000
s hg38.chr14_KI270725v1_random     33622 278 +    172810 aaatgatgagatgaaatgaaatgaaat-----aatgaaatgatatgaaataatgaaattgaaatgagatgagatgagatga---aatgagataaaatgatgagatgaaatgagatgaatgatgagatgaaatgatgagatgaaatgagatga------aaaatgatgagacgaa--------------aaatgagattaa--------------------------------------------------------------atgaaatgaaataatgaaaggaaattatgaaatgtaatgatgaaattgaaatgaaattgaaatgagatgagttgaaat--gatgagatgtaat--gatgaaatgaaatga--
s panTro4.chrUn_GL393527          117706 306 +    341619 aaatgatgagatgaaattaaatgaaataatgaaatgaaatgatatgaaataattaaattgaaatgagatgagatgagatgatataatgagataaaatgatgagatgaaatgagatgaacaataagacgaaatgatgaaatgagatgagatgataagatgaaatgatgagatgaa---atgatgagatgaaatgagatgaa---------------------------------------------------------atgagatgaaatgaaataatgaaaggaaattatgaaatgtaatgatgaaattgaaatgaga-tgagatgaaatga--tgaaatgagatgagattaaatgagatgaaatga---ga--
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004158 314 +  13868332 aaatgatgagatgaaatgaaatgaaac-----aatgaaatgatatgaaataatggaattgaaatgagacgagatgatatga--------gttaaaatgatgagatgaaatgagatgaacgatgagatgaaatgatgaaatgagatgagatgataagatgaaatgatgagatgaa---atgatgagatgaaatgagatgaaaa------------atgagatgaaatgagatgaaatgaaat---------------aatgaaatgagatgaaataatgaaaggaaattatgaaatgtaatgatgaaattgaaatgaga-tgaga----------tgaaat--gatgagatgaaat--gatgaaatgaaatga--
i ponAbe2.chr2a_random         I 16 I 5
s nomLeu3.chr7b                114479119 344 + 115148730 aaatgatgagatgaaatgaaatgaagt-----aatgaaatgatatgaaataatgaaacgaaattgaaatgagatgaaataa-----tgagttaaaatgatgagatgaaatgaaatgaatgatgagatgaaatgatgagatgagatgagatgataagaggaaatgatgagatgaaatgatgatgagatgaaatgagatgaaaaatggatgaaatgatgagatgaaatgagatgaaatgaaatgaagtagtgatatgaggtgaaattaaatgaaataatgaaaggaaattatgaaatgtaatgctgaaattgaaataaga----------------tgaaat--gatgagatgaaat--gatgaaatgagatgaga
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303297 318 + 121947112 I

a score=10665.000000
s hg38.chr14_KI270725v1_random     33900 13 +    172810 tgaaatgagatga
s panTro4.chrUn_GL393527          118012 13 +    341619 tgagatgagatga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303615 13 + 121947112 tgagatgagatgc
i gorGor3.chr9                 I 318 I 24
s ponAbe2.chr2a_random           9004477 13 +  13868332 tgagatgagatga
i ponAbe2.chr2a_random         I 5 C 0
s nomLeu3.chr7b                114479463 13 + 115148730 tgaaatgagatga
i nomLeu3.chr7b                C 0 C 0

a score=9324.000000
s hg38.chr14_KI270725v1_random     33913 24 +    172810 aataatgggatgaaatgagataat
s panTro4.chrUn_GL393527          118025 24 +    341619 aatgatgagatgaaatgagatgaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004490 21 +  13868332 aatgatgagatgaaatgagat---
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479476 24 + 115148730 aatgatgagatgaaatgaaatgat
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303628 24 + 121947112 I

a score=517.000000
s hg38.chr14_KI270725v1_random     33937 3 +    172810 gag
s panTro4.chrUn_GL393527          118049 3 +    341619 atg
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303652 3 + 121947112 atg
i gorGor3.chr9                 I 24 I 30
s ponAbe2.chr2a_random           9004511 1 +  13868332 --g
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479500 3 + 115148730 gag
i nomLeu3.chr7b                C 0 C 0

a score=5993.000000
s hg38.chr14_KI270725v1_random     33940 28 +    172810 atgagatgaaatc--atgagatgaaat-----------------gat
s panTro4.chrUn_GL393527          118052 47 +    341619 atgagatgaaatgaaatgagatgaaatgagatgtaaagaaatgagat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004512 30 +  13868332 atgggatgaaatg--atgagatgaaat---------------gagat
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479503 22 + 115148730 -----atgaaatgaaatgagatgagat--------------------
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303655 30 + 121947112 I

a score=1910.000000
s hg38.chr14_KI270725v1_random     33968 2 +    172810 ga
s panTro4.chrUn_GL393527          118099 2 +    341619 ga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303685 2 + 121947112 ga
i gorGor3.chr9                 I 30 I 8
s ponAbe2.chr2a_random           9004542 2 +  13868332 ga
i ponAbe2.chr2a_random         C 0 I 5
s nomLeu3.chr7b                114479525 2 + 115148730 ga
i nomLeu3.chr7b                C 0 C 0

a score=3690.000000
s hg38.chr14_KI270725v1_random     33970 8 +    172810 aatgaaat
s panTro4.chrUn_GL393527          118101 8 +    341619 aatgaaat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004549 8 +  13868332 ggtgaaat
i ponAbe2.chr2a_random         I 5 C 0
s nomLeu3.chr7b                114479527 8 + 115148730 aatgaaat
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303687 8 + 121947112 I

a score=-46.000000
s hg38.chr14_KI270725v1_random     33978 4 +    172810 gatg
s panTro4.chrUn_GL393527          118109 4 +    341619 gaca
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303695 4 + 121947112 gaaa
i gorGor3.chr9                 I 8 I 2
s ponAbe2.chr2a_random           9004557 4 +  13868332 gatg
i ponAbe2.chr2a_random         C 0 I 2
s nomLeu3.chr7b                114479535 3 + 115148730 gat-
i nomLeu3.chr7b                C 0 C 0

a score=91.000000
s hg38.chr14_KI270725v1_random     33982 1 +    172810 t
s panTro4.chrUn_GL393527          118113 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 I 1
e gorGor3.chr9                  49303699 2 + 121947112 I
e nomLeu3.chr7b                114479538 0 + 115148730 C
e ponAbe2.chr2a_random           9004561 2 +  13868332 I

a score=1368.000000
s hg38.chr14_KI270725v1_random     33983 12 +    172810 atgaaatgatga
s panTro4.chrUn_GL393527          118115 12 +    341619 atgaaaagcaat
i panTro4.chrUn_GL393527       I 1 C 0
s gorGor3.chr9                  49303701 12 + 121947112 atgacatgatat
i gorGor3.chr9                 I 2 I 14
s ponAbe2.chr2a_random           9004563 12 +  13868332 atgaaatgaaat
i ponAbe2.chr2a_random         I 2 I 2
s nomLeu3.chr7b                114479538  4 + 115148730 acga--------
i nomLeu3.chr7b                C 0 C 0

a score=7381.000000
s hg38.chr14_KI270725v1_random     33995 14 +    172810 gatgaaatgagatg
s panTro4.chrUn_GL393527          118127 14 +    341619 aatgaaatgagatg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004577 14 +  13868332 gatgaaatgagatg
i ponAbe2.chr2a_random         I 2 C 0
s nomLeu3.chr7b                114479542 14 + 115148730 aatgaaatgagatg
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303713 14 + 121947112 I

a score=4320.000000
s hg38.chr14_KI270725v1_random     34009 7 +    172810 aaatgta
s panTro4.chrUn_GL393527          118141 7 +    341619 aaatgaa
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303727 7 + 121947112 aaatgaa
i gorGor3.chr9                 I 14 I 26
s ponAbe2.chr2a_random           9004591 7 +  13868332 taatgaa
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479556 7 + 115148730 aaatgta
i nomLeu3.chr7b                C 0 C 0

a score=8535.000000
s hg38.chr14_KI270725v1_random     34016 26 +    172810 atgagatgaaatgaaatgacataatg
s panTro4.chrUn_GL393527          118148 22 +    341619 at--aatgaaatg--atgaaataatg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004598 26 +  13868332 gtgagatgaaatgaaatgacataatg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479563 26 + 115148730 atgagatgaaataaaatgacacaatg
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303734 26 + 121947112 I

a score=-1294.000000
s hg38.chr14_KI270725v1_random     34042 1 +    172810 -a
s panTro4.chrUn_GL393527          118170 1 +    341619 -a
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303760 1 + 121947112 -a
i gorGor3.chr9                 I 26 I 8
s ponAbe2.chr2a_random           9004624 1 +  13868332 -a
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479589 1 + 115148730 c-
i nomLeu3.chr7b                C 0 C 0

a score=2766.000000
s hg38.chr14_KI270725v1_random     34043 8 +    172810 aatga-aat
s panTro4.chrUn_GL393527          118171 9 +    341619 aatggcaat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004625 8 +  13868332 aatga-aat
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479590 8 + 115148730 aatga-aat
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303761 8 + 121947112 I

a score=3917.000000
s hg38.chr14_KI270725v1_random     34051 5 +    172810 aatga
s panTro4.chrUn_GL393527          118180 5 +    341619 gatga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303769 5 + 121947112 gatga
i gorGor3.chr9                 I 8 I 85
s ponAbe2.chr2a_random           9004633 5 +  13868332 aatga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479598 5 + 115148730 aatga
i nomLeu3.chr7b                C 0 C 0

a score=14697.000000
s hg38.chr14_KI270725v1_random     34056 39 +    172810 aatgaaatgaaat------------------aatgaaatgatgaagtaatgaaatga
s panTro4.chrUn_GL393527          118185 44 +    341619 gatgagaagaaat-------------gatgagatgaaatgatgaaatgatgagatga
i panTro4.chrUn_GL393527       C 0 I 26
s ponAbe2.chr2a_random           9004638 57 +  13868332 aatgagatgaaataaaataatgaaatgatgaaatgaaatgatgaaataatgaaatgg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479603 44 + 115148730 aatgagatgaagt-------------gaaataatgaaatgatgaaataatgaaatgg
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303774 85 + 121947112 I

a score=3084.000000
s hg38.chr14_KI270725v1_random     34095 11 +    172810 aaatgaaatgg
s ponAbe2.chr2a_random           9004695 11 +  13868332 aaatgaaatgg
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479647 11 + 115148730 aaatgaaatgg
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303774 85 + 121947112 I
e panTro4.chrUn_GL393527          118229 26 +    341619 I

a score=9014.000000
s hg38.chr14_KI270725v1_random     34106 20 +    172810 aaatgatgagatgagaagaa
s panTro4.chrUn_GL393527          118255 20 +    341619 aaatgatgagatgagatgtg
i panTro4.chrUn_GL393527       I 26 C 0
s ponAbe2.chr2a_random           9004706 20 +  13868332 aaacgatgagatgagaagaa
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479658 20 + 115148730 aaatgatgagatgagatgaa
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303774 85 + 121947112 I

a score=1332.000000
s hg38.chr14_KI270725v1_random     34126 2 +    172810 at
s panTro4.chrUn_GL393527          118275 2 +    341619 at
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49303859 2 + 121947112 at
i gorGor3.chr9                 I 85 I 139
s ponAbe2.chr2a_random           9004726 2 +  13868332 ac
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479678 2 + 115148730 at
i nomLeu3.chr7b                C 0 C 0

a score=19222.000000
s hg38.chr14_KI270725v1_random     34128 59 +    172810 g--atgagatgaaatgatga--------gatgagataaaatgagatgaaatgatgagatgaa-----atgaaat
s panTro4.chrUn_GL393527          118277 74 +    341619 gaaatgagaagaaatgatgacatggtatgatgacatgaaatcagatgaaataatgagatgaaatgagatgaaat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9004728 57 +  13868332 --gatgagatgaaatgatga--------aatg--atgagatgagatgaaatgatgagatgaa-----atgaaat
i ponAbe2.chr2a_random         C 0 I 80
s nomLeu3.chr7b                114479680 59 + 115148730 --tatgagatgaaatgatga--------aatg-----aaatgagatgaaatgatgagatgaaatgagattaaat
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303861 139 + 121947112 I

a score=7020.000000
s hg38.chr14_KI270725v1_random     34187 34 +    172810 gatgagatgagatgaaata---tgatgagatgaaatg
s panTro4.chrUn_GL393527          118351 34 +    341619 gatgagatgagatgaaatg---tgttgagatgaaatg
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr7b                114479739 37 + 115148730 gatgggatgagatgtgatgaaatgatgagatgaaatg
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49303861 139 + 121947112 I
e ponAbe2.chr2a_random           9004785 80 +  13868332 I

a score=3694.000000
s hg38.chr14_KI270725v1_random     34221 51 +    172810 acataatg--------------aatgaaatgatgaaatggaataatgaaacggaaatgatgagat
s panTro4.chrUn_GL393527          118385 65 +    341619 gcataatgaaatgaaataatgaaatgaaatgatgaaatggaataatgaaatggaaatgatgagat
i panTro4.chrUn_GL393527       C 0 C 0
e gorGor3.chr9                  49303861 139 + 121947112 I
e nomLeu3.chr7b                114479776  0 + 115148730 C
e ponAbe2.chr2a_random           9004785 80 +  13868332 I

a score=311.000000
s hg38.chr14_KI270725v1_random     34272 2 +    172810 ga
s panTro4.chrUn_GL393527          118450 2 +    341619 ga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49304000 2 + 121947112 aa
i gorGor3.chr9                 I 139 I 121
e nomLeu3.chr7b                114479776 0 + 115148730 C
e ponAbe2.chr2a_random           9004785 80 +  13868332 I

a score=11093.000000
s hg38.chr14_KI270725v1_random     34274 165 +    172810 gatgcaatgagttgaaatgagatgaaatgatgaaatgatgagatgaaatgatatgagatgtgatgaaatgatgacatgaaatgatgacataaaatgagatgaaatgagatgtaatgatggaatgagatgagatgaaatgagatgaaatgatgaggtgagataaaa
s panTro4.chrUn_GL393527          118452 157 +    341619 gat---agga--tgcaatgagttgaaatgatgagatgaaaagatgagatgagacgagatgtgatgaaatgatgacatgaa---atgacataaaatgagatgaaataagatgtaatgatgaaacgagatgagatgaaatgagatgaaatgatgagatgagatgaaa
i panTro4.chrUn_GL393527       C 0 C 0
e gorGor3.chr9                  49304002 121 + 121947112 I
e nomLeu3.chr7b                114479776   0 + 115148730 C
e ponAbe2.chr2a_random           9004785  80 +  13868332 I

a score=311.000000
s hg38.chr14_KI270725v1_random     34439 2 +    172810 ta
s panTro4.chrUn_GL393527          118609 2 +    341619 tg
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  49304123 2 + 121947112 tg
i gorGor3.chr9                 I 121 N 0
e nomLeu3.chr7b                114479776 0 + 115148730 C
e ponAbe2.chr2a_random           9004785 80 +  13868332 I

a score=1827.000000
s hg38.chr14_KI270725v1_random     34441 52 +    172810 a-----tgatatgaaatg----------atgagatgaatgacgagatgaaatgagatgaatgatgaa
s panTro4.chrUn_GL393527          118611 63 +    341619 aaacggtgacataaaatgatgatatgaaatgagatgaatgatgagatgaaat--gatga--gatgag
i panTro4.chrUn_GL393527       C 0 C 0
e nomLeu3.chr7b                114479776  0 + 115148730 C
e ponAbe2.chr2a_random           9004785 80 +  13868332 I

a score=14758.000000
s hg38.chr14_KI270725v1_random     34493 81 +    172810 atgaaatgatgagatgagatgatgagatgaaatgatgagatgagataaaatga---gatgaaatgatgagatgaaatgaaatga
s panTro4.chrUn_GL393527          118674 84 +    341619 atgagatgatgagatgaaatgatgagatgaaatgatgagatgaaatgaaatgaaataatgaaataatgagatgaaatgaaatga
i panTro4.chrUn_GL393527       C 0 I 1716
s ponAbe2.chr2a_random           9004865 71 +  13868332 atgaaataatgagatgaaatgacgagatgaaatgacgagatgaaatg--atga---gatgatatgatgagatgaga--------
i ponAbe2.chr2a_random         I 80 C 0
e nomLeu3.chr7b                114479776  0 + 115148730 C

a score=38045.000000
s hg38.chr14_KI270725v1_random     34574 504 +    172810 tgagatgagatgaaatatgatgagatgaaatgacataatgaa------tgaaatgatgaaatggaataatgaaacggaaatga--tga----gatgagatgcaatgagttgaaatga---gatgaaatgatgaaatgatgagatgaaatgat--------atgagatgtgatgaaatgatgacatgaaatgatgacataaaatgagatgaaatgagatgtaatgatggaatgagatgagatgaaatgagatgaaatgatgaggtgagataaaataa-------tgatatgaaatgatgagatgaa-tgatgagatgaaatga---gatgaatgatgaaatgaaatgatgagatgagatgagatgatgagatgaaatgatgagatgaactgatga-------------gatgaaatgaaataatgaaatgaaattgaaataaaattgaaatgagatgagatgaaatgataagatgagatgatgaaataaaatgatgaaatgatgagatgtgatgagatgaaatgatgagatga-----gatgagatgacatgaaata
s ponAbe2.chr2a_random           9004936 556 +  13868332 tgaaatgagatgaaatgtgatgagatgaaatgacataatgaaatgaaatgaaatgatgaaatggaataatgaaatggaaatgaaatggaaatgatgagatacaatgagttgaaatgatgagatgaaatgatgaaatgatgagatgaaatgatgagatgagacgagatgtgatgaaatgatgacatgaaatgatgacataaaatgagatgaaataagatgtaatgatgaagtgagatgagatgaaatgagatgaaatgatgagatgagatgaaatgagatgagatgaaatgaaatggtgagataaaatgatgatatgaaatgatgagatgaatgatgagatgaaatgatgagatgagatgagatgatgagatgaaatgatgagataaactgatgaaatgaaataatgagatgaaatgaaataatgaaatgaaatttaactaaaattgaaatgaaatgagatgaaatgataagacaaaatgatgaaataaaatgatgaaatgatgagatgtgatgagatgaactgatgagatgaaatgagatgagatgacatgaaata
i ponAbe2.chr2a_random         C 0 C 0
e nomLeu3.chr7b                114479776   0 + 115148730 C
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=57608.000000
s hg38.chr14_KI270725v1_random     35078 396 +    172810 atgaaatgaaataatgaaatgaaattgaaatgagatgagaagatacgagatgagatgaaatgatgagatgaaatgatgaaatga---tgagataagatgaaaagagtt--gatgagatga---gatgaaatgggatga------aaagagatgaaatgatgagatgaaatgaaatgatgagatgaaatga---ggtgaaatgaaattagacgaaatgtaatgagatgaaatgaaatgacataatgaaatgaaaaaatgaaatgacataatgaaatgaaa--aaatgaaacgaaataatgaaatgaggtgaaattaaatgagatgatgaaattaaatgatgaaatgaaataatgaaatggaaatgaaatggaaatgagatgaaatgatgagatgaatgatgagatgaaat--gatgaa
s ponAbe2.chr2a_random           9005492 321 +  13868332 atgaaatgaaataatgaaatgaaattgatatgagatgagaagatatgagatgagatgaaatggtgagatgaaatgatgaaatga---tgagataagatgaaatgagtt--gatgagatga-------------------------------tga---gatgaaatgaaatgaaatgatgagatgaactga---gatgaaatgaaattagatgaaatgtaatgagatgaaaaga-------------------------------cataacgaaatgaaa--aaatgaaa-----taatgaaatgag-tgaaatta-----gatgatgaaattaaatgatgaaatga-----tgaaatggaaatga---tgagatgagatgaaatgacgagacgaatgatgagatgaaat--gatgaa
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114479776 369 + 115148730 ataagatgaaataatgaaatagaa-tgaaatgagatgtg-----atgagatgagatgaaataatgaaatgaaaaaatgaaatgaaattgaaatgagatgagaagatatgagatgagatgaaatgatgaaatgagttgatgagatgatgagatgaaatgatgagaagaaaagagatgatgagatgaaatgaaatgatggtatgaaatgagatgaaatgaaattagatgaaa----------------------------------tgtaatgagatgaaatgaaatgaca-----taatgaaatgaggtgaaattaaatgagatgatgaaattaaatgattaaatgaaataatgaaatgcaaatga---tgagatgagatgaaatgatgagatgaatgatgagatgaaatgagatgaa
i nomLeu3.chr7b                C 0 C 0
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=-1340.000000
s hg38.chr14_KI270725v1_random     35474  8 +    172810 atgcaatg-------
s gorGor3.chr16                 47023740  8 -  80971650 atgaaata-------
i gorGor3.chr16                N 0 I 25
s ponAbe2.chr2a_random           9005813  3 +  13868332 atg------------
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114480145 15 + 115148730 atgaagagatgaatg
i nomLeu3.chr7b                C 0 C 0
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=1313.000000
s hg38.chr14_KI270725v1_random     35482 25 +    172810 atgagatgaaatgatgaaatgagat
s nomLeu3.chr7b                114480160 22 + 115148730 atgagatgaa---atgagatgaaat
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr16                 47023748 25 -  80971650 I
e ponAbe2.chr2a_random           9005816  0 +  13868332 C
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=573.000000
s hg38.chr14_KI270725v1_random     35507 2 +    172810 ga
s gorGor3.chr16                 47023773 2 -  80971650 ga
i gorGor3.chr16                I 25 N 0
s nomLeu3.chr7b                114480182 2 + 115148730 ga
i nomLeu3.chr7b                C 0 C 0
e ponAbe2.chr2a_random           9005816 0 +  13868332 C
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=17667.000000
s hg38.chr14_KI270725v1_random     35509 71 +    172810 gatgagatgtaatgatgagaggaaatgatgagatgtaatgaaatgagatgaaatgaatgagatgaaatgaa
s ponAbe2.chr2a_random           9005816 67 +  13868332 -atgagatgtaatgatgagaggaaatga---gatgtaatgaaatgaggtgaaatgaatgagatgaaataaa
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114480184 71 + 115148730 gatgagatgtaatgatgagaggaaatgatgagatgtaatgaaatgagatgaaatgaatgagatgaaatgaa
i nomLeu3.chr7b                C 0 I 24
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=9168.000000
s hg38.chr14_KI270725v1_random     35580 27 +    172810 ataatgaaaggaaattgaattgagata---
s panPan1.AJFE01000322                 8 27 +      1608 ataatgaaaggaaattgaattgagata---
i panPan1.AJFE01000322         N 0 N 0
s ponAbe2.chr2a_random           9005883 25 +  13868332 ataatgaaattgaattgagatgaga-----
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114480279 30 + 115148730 ataatgaaaggaaattgaattgagatgaga
i nomLeu3.chr7b                I 24 C 0
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=113780.000000
s hg38.chr14_KI270725v1_random     35607 665 +    172810 tgagatgaaatgatgagataaaatga---gatgaaat------aaatgatgagatgaaatgatgaaatgctgaggtgagatgagatgaaatgagaagatgaaacgatgagatgaaatgaaaggatgagatgaaatgatgagatgaaatgatgagatgagatgagatgaaatgagatgaaatgagatgaaatgatgaaatgagatgagaagaaatgatgagatgaaatgagatgagat---aaaatgatgagatggaatgaaatgaagtgaaatgaaatgaaataatgaaattgaaatgagatgagataaaatg--atgagatggaatgaaatgaagtgaaatgaaatgaaataatgaa-----attgaaatgagatgagatgaaatgagataaaatgatgagatgaaatgatgagaagaaatgagatgaaatgattaaatgatga---gatgagatg--atgagataaaaaatgatgagatgaaaaatgatgagatgaaatga------------------gatgaattgaaaggaaataatgaaat--aatgaaatgagatgaaatgaaatgatgaaatgatgatactgaaatgaaattgaaagataagatgaaatgatgagatgaaatgttgaaatgaaatgatgaa-----gagatatgacatgaaatgatgagctgaaatgatgagatgaaatgaaatgaaatgagatta
s ponAbe2.chr2a_random           9005908 595 +  13868332 tgagatgaaatgatgagataaaatgatgagatgaaat------aaatgatga-----aatgatgaaatgctgaggtgagatgagatgaaatgaga---------------------tgaaattatgagatgaaatgatgagatgaaatgatgagatgaggtgagatga-----gatgaaatga--tgagatgataagatgagatgagaagaaatgatgagatgaaatgagataagat-----------------------------------------------------------------gagatgaattg--atgagatgaaatgaaatgagattaaatgaaatgaaataatgaagtgaaattgaaatgagatgagatgaaatgagataaaatgatgagatgaaatgatgagaagaaatgagatgaaatgatgaaatgatga---gatgagatg--atgagatgaaa--tgatgagat-aaaaatgatgagatgaaatgatgagatgaattgaaatccgatgaaatgaaatgaaataatgaaat--aatgaaatgagatgaaatgaaatga---aattgtgatattgaaatgaaattgaaagatgagatgagatgaaatcatgaaatgttgaaatgaaatgatgaaatgaagagatgtgagatgaaatgatgagctgaaatgatgagatgataggaaacgaaatgagatta
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114480309 652 + 115148730 tgaaatgaaatgatgaaataaaatgatgaggtgaaataagaagaaatgttgagatgaaatgatgaaatgctgaggtgagatgagatgaaatgatgagaggtaatgatgaga-----tgaa---atgagatgaaatgataagatgaaatgatgcgatgaaatgagatga-----gatgaaatga--tgagatg----ggtgagatgagatgaaatgatgagatgaaatgagatgaaatggtgaaatgatgagatgagaagaaatga--tgagatgaaatgagata---------agatgagatgaaatgaaatgaaatgagatgaaacgaaatgaggtgaaatgaaatgaaataatgaaatccaattgaaatgagatgagatgaaatgacataaaatgatgagatgaaatgatgagaagaaatgagatgaaatgatgaaatgatgagatgatgagatgaaatgagatgaaaaatga-aagatgaaaaatgatgagatgaaatga------------------gatgaaataaaatgaaatagtgaactgagatgaaatgaaaagaaatgaaatgc---aatgatgatattgaaatgaaattgaaagatgagatgaaacgatgagatgaaatgttgaaatgaagtgatgaaattaagagatg----------tggtgagatgaaatgatgagatgaaatgaaatgaaatgagatta
i nomLeu3.chr7b                C 0 C 0
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=735.000000
s hg38.chr14_KI270725v1_random     36272 5 +    172810 aat-ga
s gorGor3.chr10                 93735104 6 - 147764049 gattaa
i gorGor3.chr10                N 0 I 51
s ponAbe2.chr2a_random           9006503 5 +  13868332 aat-ga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114480961 5 + 115148730 aat-ga
i nomLeu3.chr7b                C 0 C 0
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=7376.000000
s hg38.chr14_KI270725v1_random     36277 51 +    172810 tgagatgaaaaatgatgagatgaaaaatgatgagatgaaatgatgagatga-------------------------------------------
s ponAbe2.chr2a_random           9006508 48 +  13868332 ---gatgaaaaatgatgagatgaaaaatgatgagatgaaatgatgagatga-------------------------------------------
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114480966 89 + 115148730 tgagatgaaaa---atgagatg--aaatgatgagatgaaatgatgagatgaagtgagatgagatgagatgaaatacgagatatacctaatgcta
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735110 51 - 147764049 I
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=180.000000
s hg38.chr14_KI270725v1_random     36328 1 +    172810 a
s gorGor3.chr10                 93735161 1 - 147764049 a
i gorGor3.chr10                I 51 C 0
s ponAbe2.chr2a_random           9006556 1 +  13868332 g
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481055 1 + 115148730 a
i nomLeu3.chr7b                C 0 C 0
e panTro4.chrUn_GL393527          118758 1716 +    341619 I

a score=3730.000000
s hg38.chr14_KI270725v1_random     36329 4 +    172810 atga
s panTro4.chrUn_GL393527          120474 4 +    341619 atga
i panTro4.chrUn_GL393527       I 1716 C 0
s gorGor3.chr10                 93735162 4 - 147764049 atga
i gorGor3.chr10                C 0 I 132
s ponAbe2.chr2a_random           9006557 4 +  13868332 atga
i ponAbe2.chr2a_random         C 0 I 10
s nomLeu3.chr7b                114481056 4 + 115148730 atga
i nomLeu3.chr7b                C 0 I 6

a score=42627.000000
s hg38.chr14_KI270725v1_random     36333 129 +    172810 gatgag---------------------atgaat----------------------------------------------------------tgagatgagatgagatgaaataatgaaattaggtgaaataatgaaatgagatgaaat-----aatgaaataaaattgtaatgagatgagaagaaatga---gatgaaatgttgaaaagaaaggag
s panTro4.chrUn_GL393527          120478 137 +    341619 gatgag---------------------atgaat----------------------------------------------------------tgagatgagatgagatgaaataatgaaattaggtgaaataatgaaatgagatgaaatgaaataatgaaatgaaattgaaatgagatgagaagaaatgatgagatgaaatgttgaaatgaaaggag
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006571 141 +  13868332 gatgag---------------------atgaattga-----------------------------------------------------gatgagatgagatgagatgaaataatgaaattaggtgaaataatgaaatgagatgaaatgaaataatgaaatgaaattgaaatgagataagatgaaatgatgagatgaaatgctgaaatgaaagga-
i ponAbe2.chr2a_random         I 10 C 0
s nomLeu3.chr7b                114481066 199 + 115148730 aatgggtgcagcaaaccaacatgtcacatggatacatatgtaacaaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataaaataaaataaaat-aaataatgaaattaggtgaaataatgaaatgagatgaaatgaaataatgaaatgagat----------------gaaataatgagatgaaatgttgaaatgaaaggat
i nomLeu3.chr7b                I 6 C 0
e gorGor3.chr10                 93735166 132 - 147764049 I

a score=3384.000000
s hg38.chr14_KI270725v1_random     36462 6 +    172810 gaaatg
s panTro4.chrUn_GL393527          120615 6 +    341619 gaaatg
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735298 6 - 147764049 gaaatg
i gorGor3.chr10                I 132 I 10
s nomLeu3.chr7b                114481265 6 + 115148730 gaaatg
i nomLeu3.chr7b                C 0 C 0
e ponAbe2.chr2a_random           9006712 0 +  13868332 C

a score=1817.000000
s hg38.chr14_KI270725v1_random     36468 15 +    172810 atgagatgag---atgaa
s panTro4.chrUn_GL393527          120621 18 +    341619 atgagatgaggagatgaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006712  4 +  13868332 --------------tgaa
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481271 15 + 115148730 aggaaatgag---atgaa
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735304 10 - 147764049 I

a score=1820.000000
s hg38.chr14_KI270725v1_random     36483 2 +    172810 at
s panTro4.chrUn_GL393527          120639 2 +    341619 at
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735314 2 - 147764049 at
i gorGor3.chr10                I 10 I 12
s ponAbe2.chr2a_random           9006716 2 +  13868332 at
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481286 2 + 115148730 at
i nomLeu3.chr7b                C 0 C 0

a score=2863.000000
s hg38.chr14_KI270725v1_random     36485 12 +    172810 ga---gatgaaatga
s panTro4.chrUn_GL393527          120641 15 +    341619 gatgagatgaaatga
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006718  9 +  13868332 ---gagatgaaa---
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481288 15 + 115148730 gatgagatgaaatga
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735316 12 - 147764049 I

a score=1092.000000
s hg38.chr14_KI270725v1_random     36497 2 +    172810 at
s panTro4.chrUn_GL393527          120656 2 +    341619 at
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735328 2 - 147764049 at
i gorGor3.chr10                I 12 I 28
s nomLeu3.chr7b                114481303 2 + 115148730 at
i nomLeu3.chr7b                C 0 C 0
e ponAbe2.chr2a_random           9006727 0 +  13868332 C

a score=2517.000000
s hg38.chr14_KI270725v1_random     36499 28 +    172810 ----------tgagatgaaaaatggtatgaaaaatgat
s panTro4.chrUn_GL393527          120658 17 +    341619 ----------tgagatgaaa-------tga----tgac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006727 19 +  13868332 ------------aaatcata-------tgaaaaatgat
i ponAbe2.chr2a_random         C 0 I 3
s nomLeu3.chr7b                114481305 38 + 115148730 tgagatgaaatgagatgaaaagtgatatgaaaaatgat
i nomLeu3.chr7b                C 0 I 3
e gorGor3.chr10                 93735330 28 - 147764049 I

a score=4602.000000
s hg38.chr14_KI270725v1_random     36527 11 +    172810 atcaaaaatat
s panTro4.chrUn_GL393527          120675  9 +    341619 atgaaaaat--
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735358 11 - 147764049 atcaaaaatat
i gorGor3.chr10                I 28 I 63
s ponAbe2.chr2a_random           9006749 10 +  13868332 -ataaaaatat
i ponAbe2.chr2a_random         I 3 C 0
s nomLeu3.chr7b                114481346 11 + 115148730 atgaaaaatat
i nomLeu3.chr7b                I 3 C 0

a score=29998.000000
s hg38.chr14_KI270725v1_random     36538 67 +    172810 gagatgaaatgaaatgagatgatatgaaatgacataatgaaat----aagtgaaattagatgaaatgaaat
s panTro4.chrUn_GL393527          120684 65 +    341619 --gatgagatgaaatgagatgatatgaagtgacataatgaaat----aaatgaaattagatgaaattaaat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006759 66 +  13868332 gagatgaaatgaaatgagatgatatgaaatgacataatgaaataatgaaatgaaattagatgaaat-----
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481357 71 + 115148730 gagatgaaatgaaatgagatgatatgaaatgacacaatgaaataatgaaatgaaattagatgaaatgaaat
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735369 63 - 147764049 I

a score=396.000000
s hg38.chr14_KI270725v1_random     36605 3 +    172810 agt
s gorGor3.chr10                 93735432 3 - 147764049 act
i gorGor3.chr10                I 63 I 5
s nomLeu3.chr7b                114481428 3 + 115148730 agt
i nomLeu3.chr7b                C 0 C 0
e ponAbe2.chr2a_random           9006825 0 +  13868332 C
e panTro4.chrUn_GL393527          120749 0 +    341619 C

a score=1392.000000
s hg38.chr14_KI270725v1_random     36608 5 +    172810 gaaat
s ponAbe2.chr2a_random           9006825 5 +  13868332 gaaat
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481431 5 + 115148730 gaaat
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735435 5 - 147764049 I
e panTro4.chrUn_GL393527          120749 0 +    341619 C

a score=1910.000000
s hg38.chr14_KI270725v1_random     36613 2 +    172810 ga
s panTro4.chrUn_GL393527          120749 2 +    341619 ga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735440 2 - 147764049 ga
i gorGor3.chr10                I 5 I 20
s ponAbe2.chr2a_random           9006830 2 +  13868332 ga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481436 2 + 115148730 ga
i nomLeu3.chr7b                C 0 C 0

a score=6637.000000
s hg38.chr14_KI270725v1_random     36615 23 +    172810 aatgatgaaatgaaataatgaaa
s panTro4.chrUn_GL393527          120751 23 +    341619 aatagtgaaatgaaataatgaaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006832 18 +  13868332 aatg-----atgaagtaatgaaa
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481438 15 + 115148730 --------aatgaaataatgaaa
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735442 20 - 147764049 I

a score=546.000000
s hg38.chr14_KI270725v1_random     36638 1 +    172810 a
s panTro4.chrUn_GL393527          120774 1 +    341619 a
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735462 1 - 147764049 a
i gorGor3.chr10                I 20 I 6
s ponAbe2.chr2a_random           9006850 1 +  13868332 a
i ponAbe2.chr2a_random         C 0 C 0
e nomLeu3.chr7b                114481453 0 + 115148730 C

a score=1060.000000
s hg38.chr14_KI270725v1_random     36639 6 +    172810 ttaaat
s panTro4.chrUn_GL393527          120775 6 +    341619 tgaaat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006851 6 +  13868332 tgaaat
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481453 1 + 115148730 -----t
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735463 6 - 147764049 I

a score=2910.000000
s hg38.chr14_KI270725v1_random     36645 3 +    172810 gga
s panTro4.chrUn_GL393527          120781 3 +    341619 gga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735469 3 - 147764049 gga
i gorGor3.chr10                I 6 I 56
s ponAbe2.chr2a_random           9006857 3 +  13868332 gga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481454 3 + 115148730 gga
i nomLeu3.chr7b                C 0 C 0

a score=19609.000000
s hg38.chr14_KI270725v1_random     36648 56 +    172810 aatgggatgagatgagatttgatgaaatgatgagatgaaatgatgagatgatatga
s panTro4.chrUn_GL393527          120784 51 +    341619 aatg-----agatgagatttgatgaaatgatgagatgatatgatgagatgagataa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006860 46 +  13868332 aatgagatgggatgagatttgatgaaatgataagatgatatgatga----------
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481457 51 + 115148730 aatg-----agatgagatttgatgaaatgatgagatgaaatgatgagatgatatga
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735472 56 - 147764049 I

a score=2784.000000
s hg38.chr14_KI270725v1_random     36704 5 +    172810 aatga
s panTro4.chrUn_GL393527          120835 5 +    341619 aatga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735528 5 - 147764049 aatga
i gorGor3.chr10                I 56 I 28
s ponAbe2.chr2a_random           9006906 5 +  13868332 aatga
i ponAbe2.chr2a_random         C 0 C 0
e nomLeu3.chr7b                114481508 0 + 115148730 C

a score=8870.000000
s hg38.chr14_KI270725v1_random     36709 28 +    172810 tgagatgagatgggataagatgaaatga
s panTro4.chrUn_GL393527          120840 10 +    341619 ------------------gatgaaatga
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006911 28 +  13868332 tgagatgagatgggatgagatgaaatga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481508 28 + 115148730 tgagatgagatgggatgagatgaaatga
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735533 28 - 147764049 I

a score=2820.000000
s hg38.chr14_KI270725v1_random     36737 3 +    172810 tga
s panTro4.chrUn_GL393527          120850 3 +    341619 tga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735561 3 - 147764049 tga
i gorGor3.chr10                I 28 I 18
s ponAbe2.chr2a_random           9006939 3 +  13868332 tga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481536 3 + 115148730 tga
i nomLeu3.chr7b                C 0 C 0

a score=1926.000000
s hg38.chr14_KI270725v1_random     36740 18 +    172810 gataaaatg------------------atgagatga
s panTro4.chrUn_GL393527          120853 10 +    341619 aat--------------------------gagatga
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006942 36 +  13868332 gataaaatgatgagatgcaatgatgaaatgagatga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481539 18 + 115148730 gataaaatt------------------atgagatga
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735564 18 - 147764049 I

a score=7460.000000
s hg38.chr14_KI270725v1_random     36758 8 +    172810 aatgatga
s panTro4.chrUn_GL393527          120863 8 +    341619 aatgatga
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735582 8 - 147764049 aatgatga
i gorGor3.chr10                I 18 I 75
s ponAbe2.chr2a_random           9006978 8 +  13868332 aatgatga
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481557 8 + 115148730 aatgatga
i nomLeu3.chr7b                C 0 C 0

a score=34423.000000
s hg38.chr14_KI270725v1_random     36766 75 +    172810 ------------------gatgaaatgatgaggtgaagtgaTGCACTGTCACGTGTGTGTCT------TTTTCCCAACCAACAAAAATTATAATTCATT
s panTro4.chrUn_GL393527          120871 80 +    341619 ------------------gatgaaatgaTGAGGTGAAGTGATGCACTGTCACGTGTGTGTCT-ATTCTTTTTCCCAACCAACaaaaattataattcatt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9006986 81 +  13868332 ------------------gatgaaatgatgagatgaagtgaTGCACTGTCACGTGTGTGTCTTGTTCTTTTTCCCAACCAACAAAAATTATAATCCatt
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481565 98 + 115148730 aatgagataaaatgatgagaagaaatgatgaagtgaagtgaTGTACTGTCACGTGTGTGTCT-ATTCATTTTCCGAACGGAAAAAaattataattcatt
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735590 75 - 147764049 I

a score=2188.000000
s hg38.chr14_KI270725v1_random     36841 4 +    172810 AATT
s panTro4.chrUn_GL393527          120951 1 +    341619 ---t
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93735665 4 - 147764049 aatt
i gorGor3.chr10                I 75 I 48
s ponAbe2.chr2a_random           9007067 4 +  13868332 aatt
i ponAbe2.chr2a_random         C 0 I 1
s nomLeu3.chr7b                114481663 4 + 115148730 aatt
i nomLeu3.chr7b                C 0 C 0

a score=25254.000000
s hg38.chr14_KI270725v1_random     36845 51 +    172810 -TTATTTTATTATTTAAGAGTATTCTTAAGAGTTGAAGGAAAAATAATATCT
s panTro4.chrUn_GL393527          120952 51 +    341619 -taattttattatttaaGAATATTCTTAAGAGTTGAAGGAAAAATAATATCT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9007072 49 +  13868332 -taattttattatttaaGAATATTCTT--GAGTTGAAGGAAAAATAATATCT
i ponAbe2.chr2a_random         I 1 C 0
s nomLeu3.chr7b                114481667 52 + 115148730 ttaattttattatttaaGAATATTCTTAAGAGTTGAAGGAAAAATAATATCT
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735669 48 - 147764049 I

a score=1146.000000
s hg38.chr14_KI270725v1_random     36896 2 +    172810 GT
s gorGor3.chr10                 93735717 2 - 147764049 GT
i gorGor3.chr10                I 48 I 536
s ponAbe2.chr2a_random           9007121 2 +  13868332 GT
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481719 2 + 115148730 GT
i nomLeu3.chr7b                C 0 C 0
e panTro4.chrUn_GL393527          121003 0 +    341619 C

a score=268181.000000
s hg38.chr14_KI270725v1_random     36898 538 +    172810 ACATTATGGGTTACAAT-TAAGTATAAATAATACATAAATATATTAAAACTTACAAAGAAT--ATGTTTCAGAATCGAATATACCATGCTTCTGTGATGACAGTTATTTCATGCTGGTTGTCACAATTTTACATGAAAAACTAATGAAAAAATGTTTTTAACTGTTTCTAAAAATAACTGTTTCCAAAACAGTTTTACATTCAAAATATGAAAAAGATGTATTTGTGTTCCTTAATCTGATGAGATTTTCACACTCTGCACAT---AATTGTTAGATTTTTATTGTGTTGATAAATTGTATATCAAATAAAAAATGTTATTACCTCTTAAATTAGGATTTTT-AGGTGATATAGGCAGAAAGGAAGGCAAGTTTTTATAACTTTGTCTAAATGAACTTTCTAAATGCCTGAGTATTAAAAGATAGCATGTCTATAAATCACAATATATATATTACTGTATGACGTAGGACAAATCAAAACCATTACCTCTGATAACATTATATTGTGCCCAGTATAAAATAGATATAATAATACCTCAAACTTAA
s panTro4.chrUn_GL393527          121003 543 +    341619 ACATTATGGGTTACAATCTAAGTATAAATAATACATAAATATATTAAAACTTACAAAGAAT--ATGTTTTGGAATCAAATATACCATGCTTCTGTGATGACAGTTATTTCATGCTGGTTGTCACAATTTTACATGAAAAACTAATGAAAAAATGTTTTTGACTGTTTCTAAAAATAACAGTTTCCAAAAGAGTTTTACATTCGAAATATGAAAAAGATGTTTTTGTATTCCTTAATCTGATGAGATTTTCACACTCTGCACATGACAATTGTTAGATTTTTATTGTGTTGATAAATTGTATATCAAATAAAAAATGTTATTACCTCTTAAATTAGGATTTTTTAGGTGATATAGGCAGAAAGGAAGGCAAGTTTTTATGACTTTGTCTAAATGAACTTTCTAAATGCCTGAGTATTAAAAGATAGCATGTCTATAAATCACAATGTATATATTACTGTATGACCTAGGACCAATCAAAACCATTACCTCTGATAACATTATATTGTGCCCAATATAAAATAGATATAATAATACCTCAAACTTAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9007123 540 +  13868332 ACATTATGGGTTATAATCTAAGTATAAATAATACATAAATATATTAAAACTTACAAAGTTTTAATGTTTTGGAATTGAATATACCTTGCTTCTGTGATAACAGTTGTTTCATGCTGGTTGTCACAATTTTACATGAAAAACTAATGAAAAAATGTTCTTAACTGTTTCTAAAAATAA-AGTTTCTAAAAGAGTTTTACATTCGAAATATGAAAAAGATGTCTTTGTGTTCCTTAATCTGATGAGATTTTCACACTCTGCACATGATAATTGTTAGATTTTTATTGTGCTGATGAATTGTATATCAAATAAAAAATGTTATTACCTCTTAAATTAGGATTTTT-AGGTGATATAGGCAGAATGGAAGGCAAGTTTTTATAACTTTGTCTAAATGAACTTTCTAAATGCCTGAGTATTAAAAGATAGCATGTCTATAAATCACAATGTATATATTACTGTATGACCTAGGACCAATCAAAACTGCTCTCTCTGATGACATTATATTGTGCCCAATATAAAATAGAT---ATAATACCTCAAACTTAA
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114481721 542 + 115148730 TCATTATGGGTTACAACCTAAGTATAAATAATACATAAATATATTAAAACTTACACAGAAT--ATGTTTTGGAATCGAATATACCATGCTTCTGTGATGACAGTTATTTCATGCTGGTTGTCACAATTTTACATGAAAAACTAATGAAAAAATGTTTTTAACTGTTTCTAAAAATAACAGTTTCCAAAAGAGTTTTACTTCCGAAATATGACAAAGATGACTTTGTGTTCCTTAATCTGATGAGATGTTCACACTCTGCACAAGATAATTGTTAGATTTTTATTGTGTTGATAAATTGTGTATCAAATAAAAAATGTTATAGCCTCTTAAATTAGGATTTTT-AGGTGATATAGGCAGAATGGAAGGCAAGTTTTTATAACTTTGTCTAAATGAACTTTCTAAATTCCTGAGTATTAAAAGATAGCTTGTCTATAAATCACAATGTATATATTACTCTATGACCTAGGACCAATCAAAACTGTTATCTCTGATAACATTATATTGTGCCCAATATAAAATAGATACAATAACACCTCAAACTTAA
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93735719 536 - 147764049 I

a score=910.000000
s hg38.chr14_KI270725v1_random     37436 1 +    172810 A
s panTro4.chrUn_GL393527          121546 1 +    341619 A
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93736255 1 - 147764049 A
i gorGor3.chr10                I 536 I 3410
s ponAbe2.chr2a_random           9007663 1 +  13868332 A
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114482263 1 + 115148730 A
i nomLeu3.chr7b                C 0 C 0

a score=911262.000000
s hg38.chr14_KI270725v1_random     37437 1796 +    172810 TCCAGGCATTGTCATTGAATATCTTAAGAATATGCAGCAAAGGTGCTTTTAAAAATACAAGCtagtgattgtactaaatttgtaaatcacataggatagtgggtcattttaagaatatta----tttcaatctataaacgtggatgtctttccttttttgtgttttctttaatttctttcattaatatttgtcatttttgttgtcaaaatcttttacttccttggttaaatttatctctaagtacatttttgtagctattgtaaaaggaattactttcttaatttcttgtttcagctagtttactatcaatatgtagaaatgctactgatttttgtatgttgatttatatcctgcaactttattaatttcatgtatcaccctaagaagcttttggtagagtctta-tttttttccatgtataagatcacattgtctttaaacagggacaatttgactgtctcctttccaattcagatgtcctttatttctttctctcacctaatcgtcctggctaagactttcactatgtgaaatatgattggtgaaaatagacatccttttcttgttccagtataatctttttcttgttcacagtaaaatctttcaccttttccacactcagtatgatcttagctgtagatttgtcctttatgtcctt-tgtgtcaaggcatatattttctatactaaattgatgagaggttttttgtcatgtaagaatatttaattttgccaaacgcttttattgtgtttgttaatttaaccatatggttttCACtatatatccaaaggaaagaaaatcagtatatcaaagagttacctgcacccccatgtttattacagcactatgcacagtagccaagatatggaatcaacaaaagtgtccatcaacagatgaatggataaagaaatgtgacatacatatataatggaatattatttagtcataataaagaacaaaatcctgttatttgtggcaacaagaatgcaagtggagggcattatgttaggtgaaataagcctggcatagaaacataaacaccacataactacgtgttctcacttatgtatggaagctaaaatttttaatctcgtagaaatagata---gtagagttttggttaccatatcctggaaagagtaggagacagaagagtataagaaaaatgtggttaatacatacaaaattacagctggagagaaggaagaagttctagttctctacagcactgttgggtgactgtagttaatgggaatttattgtgtgttttcaaacaactaaaataaaaga--ttttgaatattctcactgcaaagaaataatacatgatttagataatggatatgataatgactctgacttgatctttacgcattgcataaatatatcaaaatatcactctgtaacccataacatgtacatttattatatgtcaattaaaGTAAATTTAAAAGAGGAAAGATGAGGTAAAGGTAAATGTACACAATTTAATTGCTTTTTCTTCTATAAAACCC--GAGTCAGTACCAAGAAGAGTCAATTTATTAGTTTTCTAAAATAAAAAAAAATCAAAATCACCAAAAAAGAGCAATATCCAAGAAAACATTGAAAATGAAACACAACATTTAGTAAGAATAGAAAACTTGGGCACTGTATCACCCTGTTCCTAGATACCGATTTACTGATGACCATTTAAATAGAATTTTATTCTATCTAATTCATTTATACTCCCAGAGTTCGAAATTACATTTTACCTACAAtaaatgagataacactt-taaattatatggtactctgcctaacacacgttaa
s panTro4.chrUn_GL393527          121547 1800 +    341619 TCCAGGCATTGTCATTGAATATCTTAAGAATATGCAGCAAAGGTGCCTTTAAAAATACAAGCtagtgattgtactaaatttgtaaatcacataggatagtgggtcattttaagaatattagttatttcaatctataaacatggatgtctttccatttttgtgttttctttaatttctttcattaatatttgtcatttttattgtagaaatcttttacttccttgcttaaatttatttctaagtacatttttgtagctattgtaaaaggaattgctttcttaatttcttgtttcagctagtttactatcaatatatagaaatgctactgatttttgtatgttgatttatatcctgcaactttattaatttcatgtatcaccctaagaagcttttggtagcatctta-tttttttctgtgtataagatcacattgtctttcaacagggacaatttgactgtctcctttccaaatcagatgtcctttatttctttctctcacctaattgtcctggcta-gactttcactatgtgaaatatgattgatgaaaataggcatccttttcttgttacaataaaatctttttcttgttcacagtaaaatctttcaccttttccacactcagtatgatcttagctgtagatttgtcctttatgtcctt-tgtgttaaggcatatattttctatactaaattgttgagacgttttttgtcaggtaaggatatttaattttgccaaacgcttttattgtgtttattaatttaatcatatgattttCAgtatatatccaaaggaaagaaaatcagtatatcaaagagttacctgcacccgcatgtttattacaacactattcacaatagccaagatatggaatcaacaaaagtgtccatcaacagatgaatggataaagaaatgtgacatacatatataatggaatattatttagtcataataaagaacaaaatcctgttatttgtggcaacaagaatgcaagtggagggcattatgttaggtgaaataagcctggcatagaaacataaacaccacataactacgtgttctcacttatgtatagaagctaaaatttttaatctggtagaagtagata---gtagagttttggttaccatatcttggaaagagtaggagaaagaagagtatgagaaaaatgtggttaatacatacaaaattacagctggagagaaggaagaagttctagttctctacagcactgttgggtgactgtagttaatgggaatttattgtgtgttttcaaataactaaaataaaaga--ttttgaatattctcactgcaaagaaataatacatgatttaagtagtggatatgataatgactgtgacttgatctttatgcattgcataaatatatcaaaatatcactctgtaccccataacatgtacatttattatatgtcaattaaaGTAAATTTAAAAGAGAAAAAATGAGGTAAATGTAAATGTACAGAATTTAATTACTTTTTCTTCTATAAAACCCAAGAGTCAGTACCAAGAAGAGTCAGTTTATTAGTTTTCTAAAATAAAAAAAAATCAG--TCACCAAAAAAGAGCAATATCCAAGAAAACATTGAAAATGAAACACAACATTTAGTAAGAATAGAAAACTTGGGCACTGTATCACCCTGTTCCTAGATACCGATTTAATGATGGCCATTTAAATAGAATTTTATTCTATCTAATTCATTTATACTCCCAGAGTTCGAAATTACATTTTACCTACAAtaaatgagataacacttgtaaattatatggtactctgcctaacacacattaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9007664 1802 +  13868332 TCCAGGCATTGTCATTGAATATCTTAAGAATATGCAGCAAAGGTGCTTTTAAAACTACAAGCtagtgattgtactaaatttgtaaatcacataggatagtgggtcattttaagaatattaattatttcaatctataaacgtggatgtctttccttttttgtgttttctttaatttctttcattaatatttgtcatttttgttgtagaaatcttttacttccttggttaaatttatttctaagtacatttttgtacctattgtcaaaggaattactttcttaatttcttgtttcagctagtttactatcaatatatagaaatgctactgatttttgtattttgatttataccctgcaactttattaatttcatttatcaccctgagaagcttttggtagcgtctta-tttttttccgtgtataagatcacattatctttaaactgtgacaattcgactgtctcctttccaattcagatgtcctttatttctttctctcgcctaattgtcctggctaagactttcactatgtgaaatatgattggtgaaaataggcatccttttcttgttacagtaaaatctttttcttgttcacagtaaaatctttcaccttttccacattcagtgtgatcttagctatagatttgtcctttatgtccttctgtgttaaggcatatattttctatactaaattgttgagagattttttgtcatgtaagaatatttaattttgccaaacgcttttattgtgtttattaatttaatcatatggttttCAgtatatatctaaaggaaagaaaagcagtatatcaaagagttacctgcacccccatgtttattacagcactattcacaatagccaagatatggaatcaacaaaagtgtccatcaacagatgaatggataaagaaatgtgacatacatatataatggaatattacttagtcataataaagaacaaaatcgtgttatttgtggcaacaagaatgcaagtggagggcattatgttaggtgaaataagcctggcatagaaacataaacaccacataactacatgttctcacttatgtatggaagttaaaatttttaatctcatagaagtagata---gtagagttttggttaccatatgctggaaagagtaggagaaagaagagtgtaagaaaaatgtggttaatacatacaaaattacagctggagagaaggaagaagttctagttctctacagcactgttgggtgactgtagttaacgggaatttattgtgtgttttcaaataactaaaataaaaga--ttttgaatattctcaatgcaaagaaataatacatgatttaggtaatggatatgataatgactctgacttgatctttacgcattgcataaatatatcaaaatatcactctgtaccccataacatgtacatttattatatgtcaattaaaataaaCTTAAAAGAG-AAAAATGAGGTAAAGGTAAATGTACAGAATTTAATTACTTTTTCTTCTATGAAACCCAAGAGTCAGTACCAAGAAGAGTCAATTTATTAGTTTTCTAAAAT-AAAAAAAATCAAAATGACCAAAAAAGAGCAATATCCAAGAAAACATTGAAAATGAAACACAACATTTAGTAAGAATAGAAAACTTGGGCACTGTATCACCCTGTTCCTAGATACCGATTTACTGATGGCCATTTAAATAGAATTTTATTCTATCTAATTCATTTATACTCCCAGAGTTCGAAATTACATTTTACCTACAATAAGTGAGATAACACGTGTAAATGATATGGTACTCTACCTAACACACGTTGA
i ponAbe2.chr2a_random         C 0 I 1166
s nomLeu3.chr7b                114482264 1782 + 115148730 TCCAGGCATTATCATTGAGTATCTTAAGAATATGCAGCAAAGGTGCTTTTAAAAATACAAGCtagtgattgtactaaatttgtaaatcacataggatagtgggtcattttaagaatatta----tttcaatctataaacatggatgtctttccttttttgtg-----tttaatttctttcattaatatttgtcatttttgttgtagaaatcttttacttccttggttaaatttatttctaagtacatttttgtaac--tcgtaaaaggaattgcttt-ttaatttcttgtttcagctagtttactatcaatatatagaaatgctactgatttttgtatgttgatttatatcctgcaactttattcatttcatttatcaccctaagaagcttttggtagagtcttattttttttccatgtataagatcgcattgtctttaaacagggacaatttgactgtctcctttccaattcagatgtcctttatttctttctctaacctaattgtcctggctaagactttcactatgtgaaatatgattggtgaaatcaggcatccttttcttgttccagtaaaatctttttcttgttcacagtaaaatctttcaccttttccacattcagtatgatcttagctgtagatttgtcctttatgtccttccgtgttaaggcatatattttctatactaaattgttgagaggttttttgtcatgtaagaatatttaattttgccaaacgcttttattgtgtttattaatttaatcatatggttttCAgtacatatccaaaggaaagaaaatcagtatatcaaagagttacctgcacccccatgtttattacagcactattcacaatagccaggatatggaatcagcataagtgtccatcaacagatgaatggataaagaaatgtgacatacatatataatggaatattatttagtcataataaagaacaaaatcctgttatttatggcaacaagaatgcaagtggagggcattatgttaggtgaaataagcctggcatagatacataaacaccacataactacatgttctcacttatgtatggaagttaaaatttttaatcttgtagaagtagataacggtagagttctggttaccatatcctggaaagagtaggagaaacaagagtataagaaaaatgtggttaatacatacaaaattacagctggagagaaggaagaagttctagttctctacagcactattgggtgactgtagttaacgggaacttat--tttgttttcaaataactaaaataaaagaatatttgaatattctcactgcaaagaaataatacatgatttaggtaatggatatgataatgactctgacttgatctttacacgttgtataaatatatcaaaatataactctgtaccccataacatgtacatctattatatgtcaattaaaataaaTTTAAAAGAGAAAAAATGAGGTAAAGGTAAATGTACAGAATTTAATTACTTTTTCTTCCATAAAACCCAAGAGTCAGTACCAAGAAGAGTCAATTTATTAGTTTTCTAAAATAAAAAAAG---------ACCAAAAAAGAGCAATATCCAAGAAAACGTTGAAAATGAAACACAACATTTAGTAAGAATAGAAAACTTGGGCACTTTATCACCCTGTTCCTAGATACCAATTTACTGACGGCCATTTAAATAGAATTTTATTCCATCTAATTCATATATACTCTCAGAGTTCAAAATTACGTTTTACCTACAATAAA-GAGATAACG--TGTAAATTATGT--TACTCTGCCTAACACACGTTAA
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93736256 3410 - 147764049 I

a score=805568.000000
s hg38.chr14_KI270725v1_random     39233 1621 +    172810 taactcaatacatgttagcAATAAACTTTTAGTATAG------------------------------------------------------------------------------------------------------TAGTCAAAGTATTAATTTCTCACATTGCAATTTCCTTCAAAGACATGAATACAACCTTTCTAATGACTCCTTGTTCATCAAGATACCTCTTCAAATTATTCTATTTGTTTCATTCAGTATATTGTCTGTGCATACCGATAT-----TACACTC--ttttctttttttgagatggaacctcattctgttactgatgctggaatgaggcggcatgatcttggttcactgcaacctccacctcccaggttcaagcgattctcctgtctcagccccccaagtagctaggactacaggtgcacaccaccatgcctggctaatttttgtatttttagtacagtcagagtttcaccctgttgtccaggctggactcgaactcctgacctcaggtgatccacccaccatggcctcccaaagtgctgggattacaggcataagccaccgcacccagccTGATATTGCACTCTTGGATTTTGAACACTGAATATCTTTTTGAAAGATTACACCTCTTTACCTCTTCGTGCTTCAGAAATTATTTTCCTTCAAGTGTTCTAAGAGTCTAATGAAGAATGAA-GTCATGTTTTATCACTTTTGTCCTTAAAGATTTCAGACATGCTGAAACTGATTGAAGTATCATCTGCTACCCGATAGATTAATTATCTCTAGTTGTAGGAGTGGATACATCTTTAATGGTATATTTTTGGTTATTGTCTTATTTTTGATGTAGTATTCTATCAATAATTTATTAAACCTGGCATCCTTGGGTGAGCATAGATTTTTCAACTTTGGTGTTATATTGTGTTTGCTTTTAAAAACTGCTTTTGAggccaggtatggtggctcttgcccata--tccagcactttgggaggccaaggtgggcggattacctcaggtcaggagttcaagaccagcctggtcaacatggcaaaaccatgtctctactaaaaacacaaaattagccaggcatggtggtgcatgcttgtagtcctaaccactcgagaggctgaggcaagagaatcacctgaacctgggaggcaaaagttgctaggttgctgtgaggcaaattcgcaccattacactccagcctgggtgaaaagagcaaaactctgtctcaaaaaaa-aaaaCCCACCAAAAACTGCTTCTGAATGGAATTGTACATACAA-TTTTGATGAAAAAAATTATCAAGTGCATAAGTTCATAATAGAAAAACCAATAATACTCCAGGCACAAGTTAGTACT-AAAA-----AAATTATGTTGAATATTCTCTAATACAACATGCTTTTTCCCTTCATGAACAATTTGTGTTTTACTGAGAAGAGTCATTGTTTATGGTAGACATTAGACCACAGATGAATATGTACTTTAAACACTCTTAGTTACTTTCTTAATTTTATATCTGCTGCTTCATGCTTCTGTTTATTTTCATTCTTTCCAATGTCCACATTCTAGTAAATTTGAATATTTTAATCCAAGTTTATATACTATTTAATATTGCTTGTATAGTTTAGTATTGTGAAGACTCAAAAAGGTTTACAGAAAGAAGAAAA--AGATCAACATGTTATTAATCATTTAAAGATC-TTTTGAAATCTTTGACCTTT
s panTro4.chrUn_GL393527          123347 1627 +    341619 taactcaatagatgttagcAACAAACTTTTAGTATAG------------------------------------------------------------------------------------------------------TAGTCAAAGTATTAATTTCTCACATTGCAATTTCCTTCAGAGACATGAATACAACCTTTCTAATGACTCCTTGTTCATCAAGATACCTCTTCAAATTATTCTATTTGTTTCATTCAGTATATTATCTGTGTATACCGATATGATATTACAGTC--ttttttttttttgagacagaatctcattctgtaactgatgctggagtgaggtggcatgatctgggttcactgcaacctccacctcccaggttcaagcgattctcctgtctcagccccctatgtagctaaaactacaggtgcacaccaccatgcctggctaatttttgtatttttagtacagtcagagtttcaccccgttgtccaggctggtctcgaactcctgacctcaggtgatccacccaccatggcctcccaaagtgctgggattacaggcataagccaccgcacccagccTGATATTGCACTCTTGGATTTTGAACACTGAATATCTTTTTGAAAGATTACACCTCTT-ATCTCTTTGTGCTTCAGAAATTATTTTCCTTCAAGTGTTCTAAGAGTCTAATGAAGAATGAA-GTCATGTTTTATCACTTTTGCCCTTAAAGATTTCAGACATGCTGAAACTGATTGAAGTATCATTTGCTACCAGATAGATTAATTATCTCTAGTTGTAGGAGTGGATACATCTTTAATGGTATATTTTGGGTTATTGTCTTATTTTTGATGCAGTATTCTATAAATAATTTATTAAACCTGGCATCCTTGGGTGAGCATGGATTTTTCAACTTTGGTGTTATATTGTGTTTGCTTTTAAAAACTGCTTTTGAggccggatatggtggctcttgcccata--cccagcactttgggaggccaaggtgggcggattacctcaggtcaggagttcaagaccagcctagtcaacatggcaaaaccatgtctctactaaaaacacaaaattagccaggcatggtggtacatgcttgttgtcctaaccactcgggaggctgaggcaagagaatcacctgaacctgagaggcaaaagttgctaggttgctgtgagccaagttcacaccattgcactccagcctgggtgaaaagagcaaaactctgtctcaaaaaaagaaaaCCCACCAAAAACTGCTTTTGAATGGAGTTGTACATACAA-TCTTTATGAAAAAAATTACAAAGTGCATCAGTTCATAACAGAAAAACCAATAATACTCCAGGCACAAGTTAGTACT-AAAA-----AAGTTATGTTGAATATTCTCTAATACAACATGATTTTTCCCTTCATGAACAATTTGTGTTTTACTGAGAAGAGACATTGTTTATGGTAGACATTACACTACAGATGAATATGTACTTTAAACACTCTTAGTTGCTTTCTTAATTATATATCTGCTGCTTTATGCTTCTGTTTATTTTCATTCTTTCCAATGTCCACATTCTAGTAAATTTGAATATTTTAATCCAAGTTTATATACTATTTAATATTGCTTGTATAGTTTAGTATTGTTAAGACTCAAAAAGGTTTACAGAAAGAAGAAAA--AGATCAACATGTTATTAATCATTTAAAGATCATTTTGAAATCTTTGACCttt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9010632 1621 +  13868332 TAACTCAATACATGTTAGCAATAAACTTTTAGTATAG------------------------------------------------------------------------------------------------------TAGTCAAAGTACTAATTTCTCACATTGCAATTTCCTTCAAAGACATGAATACAACCTTTCTAATGACTCCTTGTTCATCAAGATACCTCTTCAAATTATTCTATTTGTTTCATTCATTATATTATCTGTGTATACCGATAT-----TACACTCttttttttttttttgagatggagtctcattctgttactgatgctggagtgaggtggcatgatctcggttcactgcaacctccacctcccaggttcaagcgattctcctgtctcagccccccaagtagctaggactacaggtgcacaccaccatgcctggttaatttttgtatttttagtacagtcagggtttcacactgttgtccaggctggtttcgaactcctgacctcagaggatccacccatcatggcctcccaaagtgctgggattacaggcataagccaccgcacccagccTGATATTGCACTCTTGGATTTTGAACACTGAATATCTTTTTGAAAGATTACACCTCTTTAGTTCTTTGTGCTTCAGAAATTATTTTCCTTCAAGTGTTCTAAGAGTCTAATGAAGAATAAA-GTCATGTTTTATCACTTTTGTCCTTAAAGATTTCAGACATGCTGAAACTGATTGCAATATCATTT-CTATCAGACAGATTAATTATCTC--GTTGTAGGAGTGGATACATCTTTAATGGTATATTTTGAGTTATTGTCTTATTTTTGATGCAGTATTCTATAAATAATTTATTAAACCTGGCATCCTTGGGTGAGCATGGATTTTTCAACTTCGGTGTTATATTGTGTTTGCTTTTAAAAACTGCTTTTGAggccgggtatggtggctcttgcccaca--cccagcattttgggaggccaaggtgggcagattacctcaggtcaggagttcaagaccagcctggtcaacatggcaaaaccacgtctctactaaaaacacaaaattagccaggcatggtggtgcatgcttgtagtcctaaccactcgggaggctgaggcaagagaatcacctgaacctgggaggcaaagtttgctaggttgctgtgagccaagttcgcaccattgcactccagcctgggtgaaaagagcaaaactctgtctcaaaaaaa-aa---TCACCAAAAACTGCATTTGAATGGAGTTGTAAATACAA-TTTTTTATGAAAAAATTATCAAGTGCATAAGTTCATAATCGAAAAACCAATAATACTCCAGGCACAAGTTAGTACTAAAAA-----AAACTATGTTGAATATTCTCTAATATAACATGCTTTTTCCCTTCAGGAACAATTTGTGTTTTACTGAGAAGACTCATTGTTTATGGTAGACATTAGACTACAGATGAATATGTACTTTAAACACTCTTAGTTGCTTTCTTAATTTTATATCTGCTGCTTTATGCTTCTGTTTATTTTCATTCTTGCCAATGTCCACATTCTAGTAAATTTGAATATTTTAATCCAAGTTTATATACTATTTAATATTGCTTGTATAGTTTAGTATTTTTAAGACTCAAAAACGTTTACAGAAAGAAGAAAAAGAGATCAACATGTTATTAATCATTTAAAGATCATTTTAAAATCTTTGACCttt
i ponAbe2.chr2a_random         I 1166 C 0
s nomLeu3.chr7b                114484046 1729 + 115148730 TAA-TCAATACATGTTAGCAATAAACTTTTAGTGTAGTACTAAATAGCACTTTTAATATAGTACTAAATAGTACTTTTTCAGTATAGTACTAAATAGTACTTTTAGTATAGTACTAAATAGTACTAAATTTACTAAATTTAGTCAAAGTACTAATTTCTCACATTGAAATTTCCTTCAAAGACATGAA---AACCTTTCTAATGACTCCTTGTTCATCAGGATACCTCTTCAAATTATTCTATTTGTTTCATTCAGTTTATTATCTGTGTATACCTATAT-----TACACTC----ttttttttttgagatggtatctcattctgttactgacgttggagtgaggtggcatgatctccgttcactgcaacctccacctcccaggttcaagcgattctcctgtctcagccccccaactagctaggactacaggtgcacaccaccatgcctggctaatttttgtatttttagtagagtcagggtttcaccctcttggccaggctggtctagaactcctgacctctggtgatccacccaccatggcctcccaaagtgctgggattacaggcataagccaccgcacccagccTGATATTGCAGTCTTGGATTTTGAACACTGAATAACTTTTTGAAAGATTGCACCTCTTTACCTCTTTGTGCTCCAGAAATTATTTTCCTTCAAGTGTTGTAAGAGTCTAATGAAGAATGAAGGTCATGTTTTATCACTTTTGTCCTTACATATTTCAGACATGCTGAAACTGATTGAAGTATAATTTGCTACCAGATAGATTAATTATCTGTAGTTGTAGGAGTGGATACATCTTTAATGGTATATTTTGGGTTATTCTCTTATTTTTGATGCAGTATTCTATAAATAATTTATTAAACCTGGCATCCTTGGGTGAGCATAGATTTTTCAACTTTGGTGTTATATTGTGTTTGCTTTTAAAAACTGCTTTTGAggctgggtatggtggctcttgccagtaatcccagcactttggaaggccaaggtgggcggattacctcaggtcaggagttcaagaccagcctggtcaacatggcaaaaccacgtgtctactaaaagcacaaaattagccaagcatgatggtgcatgcttgtagtcctaaccactcaggaggctgaggcaagagaatcacctgaacctgggaggcgaaggttgctaggttgctgtgagccaagttcacactattgcactccagcctaggtgaaaagagcaaaactccgtatcaaaaaaa-aaaaCCCACCAAAAACTGCTTTTGAATGGAGTTGTAAATACAATTTTTTATGAAAAAAATTAGCAAGTGCATAAGTTCATAATAGAAAAACCAATAATATTCCAGGCACAAGTTAGTACT-AAAAAAATTAAATTATGTTGAATATTCTGTAATACAACATGATTTTTCCCTTCATGAACAATTTGTGTCTTACTGATAAGACTCACTGTTTATGGTAGACATTAGACTACAGATGAATATGTACTTTAAACACTCTTAGTCGCTTTCTTAATTTTATATCTGCTGCTTTATGCTTCTGTTTATTTTCATGCTTTCCAATGTCCACATTCTAGTAAATTTGAATATTTTAATCCAAGTTTATATACTATTTAACATTGCTTGTATAGTTTAGTATTTTTAAGACTCAAAAAGGTTTACAGAAAGAAGAAAAAGAGATCAACATGTTATTAATCATTTAAAGATCATTTTAATATCTTTGACCTTT
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93736256 3410 - 147764049 I

a score=910.000000
s hg38.chr14_KI270725v1_random     40854 1 +    172810 A
s panTro4.chrUn_GL393527          124974 1 +    341619 a
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93739666 1 - 147764049 A
i gorGor3.chr10                I 3410 I 6685
s ponAbe2.chr2a_random           9012253 1 +  13868332 a
i ponAbe2.chr2a_random         C 0 C 0
s nomLeu3.chr7b                114485775 1 + 115148730 A
i nomLeu3.chr7b                C 0 C 0

a score=993888.000000
s hg38.chr14_KI270725v1_random     40855 1964 +    172810 TATTTTAATGAATAAAATATTAGTAGTTATTAGTATAAAATAATTTATGTCTTTTGGACTTAGCATCCAGTATTTCTTTTTTAATAAAGAAAATAATTATTCTCTTGCAATATACTATGTTTATCTGGGTTTTGAAAAGTGCTGTTTCCTAATATGAGAAAGCCATTTACATTTTTAATTCTACAAAGGCAAATGGAATGGTACTAAATTATTTACATAATAATGTTTAGATGGTGGCCCTTATAACATTCTTTCTATACTTCCTACAGAGTTGCAGATATGCAATCATAGAATATTTCTGGGAGCTAATCCTTTAGCTTGATGAATGAAACAAGACTTTTAAATAAAATTAAACTTTCAAATTATCCAGGTAATGGGCCTGTCTTTTAATTCAATGGATATGGAGCATAATGAATTATCCC-TGTTCATTGGGTAATAAGTTTTCATTCT-----TCTAATACTCAAAATGTCCTTTAATTTTTAAT-------AGTCATATCATTATCCCTAGGTATTTTAGCTTCTATCTTAAATTCTAAAATAATTTTGAAACAGGAGAAAGTATTCTTTATTACTATATGTATTAAACATCATGGTTTTCAAATTTAACTGCAAATGTATCTTTTCATTGCTTCTTGGTGACGCCCTTCACCCTATCCATATTGTCACTACCAAGTGGTGATTACTTTTCAGGTTCACATACTTATTCTTTAGAAAAATCT---CTGTGCCTTATAAAGAATATGATTGTTGGCATTCAAAAGCCAGCGAAGTATACATTATTAGCCTGTTGCCTAACTCATTTCTTTAAGAAACTACACTAATTACCCACATACTTATGTTTTTATTTCCTCATTATTTCTGGAGAAAACAAATACTGCTAACATGATATTTGTAAGAGAGAAAAAAGTCTTTTCTTGAAAAGTGCTGTCATTGTAGTACTAACTTATAGTATCAACTTCTTTATAAACTCCTTATACACTTTTTATTCTGAGAGAAATAAAAAAGCTAAAAGTGAAATGACTTTTTTAACTCTCCATATTATAAGCACCCATGTTGGTAATTTAGGGTCTTTATAGTTAGGGTAAGTTGTGTCATACCGAGATTACAAAATAAAAAGTATTTTGTCTCTTTGGGCCTTTCCTTATTCAGTAATACTGTCAGTTTGGCTTTTTTTGTAGGTCAACTTATTGATATCAGTATTCTGAAATAATATGTTTACTATCTTTTGATAAGCATTTAAAATATTAGATTTATTGTTACTCTTCTGCCTTCATTGGGCTGGAAGAATAATTGTTTC--TCACTCCACAAAAGCCAAGTTGCAGAGAAAAACACATAGACATTCAACTGCAAAGCAGAGAAACTTGACTATTTCCTGCAATTTTAAAGTGTATATTGAATA----AAACCATCTTTTT-ATTTTCTTTTTTGCTCACTGGCAAATATTAACAATATCAAGTGTGTTATTATAATGTTATCTAGTTAAAAATCTCAAAAAGTTTTCATAATTACCATTTACAAATATATAAATAGGTGACCTAATGTTAATTTTTATTGTCTGAGACCAtgtctgttatttcactctttaaattcagttagtaatgcagaacctagcacttagta----ctcaaaaattatgtgctggataaaAAAAGGTTAAACATGTAATATATACAAAATGTACTGGAAAAA-ATGCACCAAACAATTTTGTTATACCAGTTTAATGTAGAATATTGCCTTTAAAAGATAATATAGTTTTCAGGTGTCTACAGTGATTTTGTAATATTTGTGCACATATAAAATAATATTTCCAAAAATGTAATCCAGTGAGGAAATATACTCtctaaattctagatttataatttagggtttaaattataaaatcATTAAATAAGATACAAGTGAAATATAGTCAAATATCCCCTTGGAAAAAAATTAAGTGGCCTTTAAAGTGAGGTATTCATATATGTAATTTTACAATC
s panTro4.chrUn_GL393527          124975 1972 +    341619 tattttaatgaataaaatattagtagttactaatataaaataatttatGTCTTTTGGACTTAGCATCCAGTATTTCTTTTTTAATAAAGAAAATAATTATTCTCTTGCAATATACTATGTTTATCTGGGTTTTGAAAAGTGATGTTTCCTAATATGAGAAAGCCATTTACATTTTTAAATCTACAAAGGCAAATGGAATGGTACTAAATTATTTACATAATAATGTTAAGATGGTGGCCCTTATAACATTCTTTCTATACTTCCTACAGAGTTGGGGATATGCAATCCTAGAATATTTCTGGGAGCTAATCCTTTAGCTTGATGAATGAAACAAGACTTTTAAATAAAATTAAACTTTCAAAATATCCAGGTAATGGGCCTGTCTTTTAATTCAATGGATATGGAGCATAATGAATTATCCCCTGTTCATTGGGTGATAAGTTCTCATTCT-----TATAATACTCAAAATGTCCTTTAATTTTTAATTTGTGATAGTCATATCATTATCCCTAGGTATTTTAGCTTCTATCTTAAATTCTAAAATAATTTTGAAATAGGAGAAAATATTCTTTATTACTATATGTATTAAACTTCATGGTTTTCAAATTTAACTGCAAATGTATCTTTTCATTGCTTCTTGGTGACGCCCTTCACCCTATCCATATTGTCACTACCAAGTGGTGATTACTTTTCAGGTTCACATACTTATTCTTCAGAAAAATCTTCTCTGTGCCTTATAAAGAATATGATTGTTGGCATTCAAAAGCCAGTGAAGCATACATTATTAGCCTGTTGCCTAACACATTTCTTTAAGAAACTACACTAATTAACCACATACTTATGTTTTTATTTCCTCATTATTTCTGGAGAAAACAAATACTGCTAACATGATATTTGTAAGAGAGAAAAAAGTCTTTTCTTGAAAAGTGCTGTCATTGTAGTACTAACTTATAGTATCAACTTCTTTATCAACTCCTTATACACTTTTTATTCTGAGAGAAATAAAAAAGCTAAAAGTGAAATGACTTTTTTTACTCTCCATATTATAAGCACCCATCTTGGTAATTTAGGGTCTTTATAGTTAGGGTAAGTTGTGTCATACTGAGGTTACAAAATAAAAAGTATTTTGTCTCTTAGGGCCTTTCCTTATTCAATAATACTGTCAGTTTGGCTTTTTTTGTAGGTCAACTTATTGAACTCACTATTCTGAAATAACGTGTTTACTATCTTTTGATAAGCATTTAAA-TATTAAATTTATTGTTACTCTTCTGCCTTCTTTGGGCGGGAAGAATAATTGTTTC----ACTCC-CAAA--CCCAGTTGCAGA-AAAAACACATAGACCTTCACCTGCAAAGCAGACAAACTTGACTAATTCCTGCAATTTCAAAGTGTATATTGAATA----AAACCATCTTTTTTATTTTCTTTTTTGCTCACTGGCAAACATTAACAACGTCAAGTGTGTTATTATAATGTTATCTAGTTAAAAATCTCAAAAAGTTTTCATAATTACCATTTTAAAATATATAAATAGGTGACCTAATGTTAATTTTTATTGTCTGAGACCAtgtctgttatttcactctttaaagtcagttagtaatgcaaaacctagcacttagtagatactcaaaaattatttgctggataaaAAAAGGTTAAACATGTAATATACACAAAATGTACTGGAAAAA-ATGCACCAGATGATTTTGTTATACCAGTTTAATGTA-AATATTGCCTTTAAAAGATAATATAGTTTTCAGGTGTCTACAGTGATTTTGTAATATTTGTGCACATATAAAATAATATTTCCAAAAATGTAATCCAGTGGGGAAATATACTTTCTAAATTCTAGATTTATAATTTAGGGTTTAAATTATAAAATCATTAAATAAGACACAAGTGAAATATAGTCAAATATCCCCTTGGAAAAAAATTAAGTGGCCTCTAAAGTGAGGTATTCATATATGTAATTTTACAATC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chr2a_random           9012254 1979 +  13868332 tattttaatgaataaaatgttagtagttattaatataaaataatttatGTCTTTTGGACTTAGCATCCAGCATTTCTTTTTTAATAAAGAAAATAATTATTCTCTTGCAATATACTGTGTTTATCTGGGTTTTGAAAAATGATGTTTCCTAATATGAGAAAGCCATTTACATTTTTAAATCTACAAAGGCAAATGGAATGGTACTAAATTATTTACATAATAATGTTTAGATGGTGGCCCTTATAACATTCTTTCTATACTTCCTACAGAGTTGGGGATATGCAATCCTAGAATATTTCTGGGAGCTAATCCTTTAGCTTGATGAATGCAACAAGACTTTTAAATAAAATTAAACTTTCAAATTATCCAGGTAATGGGCCTGTCTTTTAATTCAATGGATATGGAGCATAATGAATTATCCCCTGTTCATTGGGTAGTAAGTTCTCATTCT-----TATAATATTCAAAATGTCCTTTAATTTTTAATTTTTGATAGTCATATCTTTATCCCTAGGTATTTTAGCTTCTGTCTTAAATTCTAAAACAATTTTGAAACAGGAGAAAGTATTCTTTACTACCATATGTATTAAACATCATGGTTTTCAAATTTAACTGCAAATGTATCTTTTCATTGCTTCTTGATGACGCCCTTCACCCTATCCATATTGTCACTACCAAGTGGTGATTACTTTTCAGGTTCACATACTTGTTCTTTAAAAAAAAT----CTGTGCCTTATAAAGAATATGATTGTTTGCATTCAAAAGCCAGTGAAGTATACATTATTAGCCTGTTGCCTAACTCATTTCTTTAAGAAACTACACTGATTACCCACATACTTATGTTTTTATTTCCTCATTATTTCTGGAGAAAACAAATACTGCTAACATGATATTTGTAAGAGAGAAAAAAGTCTTTTCTTGAAAAGTGCTGTCATTGTAGTATTCACTTATAGTATCAACTTCTTTATAAACTCCTTATACACTTTTTCTTCTGAGAGAAATAAAAAAGCTAAAAGTGAAATGACTTTTTTTACTCTCCATATTATAAGCACCCATCTTGGTAATTTAGGGTCTTTATAGTTAGGGTAAGTTGTGTCATACCGAGGTTACAAAATAAAAAGTATTTTGTCTCTTTGGGCCTTTCCTTATTCAGTAATACTGTCAGTTTGGCTTTTTTTGTAGGTCAACTTATTGATCTCAGTATTCTGAAATAATATGTTTACTATCTTTTGATAAGCATTTAAAATATTAGATTTATTGTTACTCTTCTGCCTTTATTGGGCTGGAACAATAATTGTTTCTCTCACTCCACAAAAGCCAAGTTGCAGA-GAAAACACATAGACATTCAACTGCAAAGCAGAGAAACTTGACTATTTTCTGCAATTTTAAAGTGTATATTGAATGAATTAAACCATCTTTTT-ATTTTCTTTTTTGCTCACTGGCAAATATTAACAACATCAAGTATGTTATTATAATGTTATCTAGTTAAAAATCTCAAAAAGTTTTCATAATTACCATTTTAAAATATATAAATAGGTGACCTAATGTTAATTTTTATTGTCTgggaccatgtctgttatttcactctttaaagtcagttggtaatgcagaacctagcacttagtagatactcaaaaattatttgctgaat-aaaAAAGGTTAAATATGTAATTTATACAAAATGTACTGGACAAA-ATGCACCAAACAATTTTGTTATACCAGTTTAATGTAGAATATTGCCTTTAAAAGATAATATAGTTTTCAGGTGTCTACAGTGATTTTGTAATATTTGTGCACATATAAAATAATATTTCCAAAAATGTAATCCAGTGAGGAAATATACTTTCTAAATTCTAGATTTATAATTTAGGGTTTAAATTATAAAATCATTAAATAAGACGCAAGTGAAATATAGTCAAATATCCCCTTGGAAAAAAATTGAGTGGCCTCTAAAGTGATGTGTTCATATATGTAATTTTACAATC
i ponAbe2.chr2a_random         C 0 N 0
s nomLeu3.chr7b                114485776 1980 + 115148730 TATTTTAATGAATAAAATGTTAGTAGTTATTAGTATAAAATAATTTATGTCTTTTGGACTTAGCCTCCAGCATTTCTTTTTTAATAAAGAAAATAATTATTCTCTTGCAATATACTATGTTTATCTGGGTTTTGAAAAATGATGTTTCGTAATATGAGAAAGCCATTTACACTTTTAAATCTACAAAGGCAAATGGAATGGTACTAAATTATTTCCATAATAATGTTTAGATGGTGGCCCTTATAACATTCTTTCTATACTTCCTACAGAGTTGGGTATATGCAATCCTAGAATATTTCTGGGAGCTAATCATTTAGCTTGATGAATGAAACAAGACTTTTAAATAAAATTGAACTTTCAAATTATCCAGGTAACAGGCCTGTCTTTTAATTCAATGGATATGGAGCGTAATGAATTATCCCCTGTTCATTGGGTAGTAAGTTCTCATTCTTAACCTATAATACTCAAAATGTCCTTTAATTTTTAATTTTTGATAGTCATATCATTATCCCTGGGTATTTTAGCTTCTATCTTAAATTCTAAAATAATGTTGAAACAGGAGGAATTATTCTTTGTTACCATATGTATTAAACATCATGGTTTTCAAATTTAACTGCAAATGTATCTTTTCATTGCTTCTTGATGACACCCTTCACCCTATCCATATTGTCACTACCAAGTGATGATTACTTTTCAGGTTCACATACTTGTT-TTTGGAAAAATAT---CTGTGCCTTATAAAGAATATGAGTGTTGGCATTCAAAAGCCAGTGAAGTATACATTATTAGCCTGTTGCCTAACTCATTTCTTTA--AAACTACACTAATTACCCACATACTCATGCTTTTATTTCCTCATTATTTCTGGAGAAAACAAATACTGCTAACACGATATTTGTAAGAGAGAAAAAAGTATTTTCTTGGAAAGTGCTGTCATTGCAGTATTAACTTATAGTATCAACTTCTTTATAAACCCCTTATACACTTTTTATTCTGAGAGAAATAAAAAAGCTAAAAGGGAAATGAGTTTTTCTACTCTCCATATTATAAGCACCCATCTTGGTAATTTAGGGTCTTTATAGTTAGGGTAAGTTGTGTCATACCGAGATTACAAAATAAAAAGTATTTTGTCT----GGGCCTTTCCTTATTCAGTAATACTGTCAGTTTGGCTTTTTTTGTAGGTCAACTTATGGATCTCAGTATTCTGAAATAATATGTTTACTATCTTTTGATAAGCATTTAATATTTTAGATTTATTATTACTCTTCTGCCTGTATTGGGCTGGAAGAATAATTGTTTCTCTCACTCCACAAAAACCAAGTTGCAGAGAAAAACACATAGACCTTCAACTGCAAAGCAGAAAAACTTGACTATTTTCTGCAATTTTAAAGTCTATCTTGAATAAATTAAACCATCTTTTT-ATTTTCTTTTTTGCTCACTGGCAAATATTAACAACATCAAGTGTGTTATTATAATGTTATCTAGTTGAAAATCTCAAAAAGTTTTCATAATTACCATTTTAAAATATATAAATAGGTGACCTAATGTTAATTTTTATTGTCTGAGACCATGTCTGTTATTTCACTCTTTAAATTCATTTGGTAATGcagaacctactacttagtagatactcaaaaaatatttgctgaat-aaaAAAAATTAAATATGTAATATATACAAAATGTACTGGAAAAATATGCACGAAACAATTTTGTTACACCAGTGTAATGTAGAATATTGCCTTTGAAAGATATTACAGTTTTCAAGTGTCTACAGTGACTTTGTAATATTTGTGCACATATAAAATAATATTTCCAAAAATGTAATCCAGTGAGGGAATATACTttctaaattctagatttataatttgaggtttaaattataaaatcATTAAATAAGATGCAAGTGAAATGTAATCAAATATCCCCTTGGAAAAAAATTAAGTGGCCTCTAAAGTGACGTACTGATATATGTAATTTTGCAATC
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr10                 93739667 6685 - 147764049 I

a score=445.000000
s hg38.chr14_KI270725v1_random     42819 3 +    172810 CTC
s panTro4.chrUn_GL393527          126947 3 +    341619 CTC
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr7b                114487756 3 + 115148730 ATC
i nomLeu3.chr7b                C 0 I 44409
e gorGor3.chr10                 93739667 6685 - 147764049 I

a score=276656.000000
s hg38.chr14_KI270725v1_random     42822 3163 +    172810 TAGTGATAGAATTAATTAAATATGCCACCAAATTGATTAATTCCTACAGTGTTAAAAGAGAAGCACTAACAATACCAGTGACCATGTAACATGGATTTAAGCTACAAGTCATAGAAATGTGACGAGAAGCCTCAGCGCTGTAAAACAGAGGGTGGAAGAAAGCTTTTCCTCTCTCAAATGAGCTTTGCGAGGTATACTTCTTGAAGGATAGGAAGTTGAAGTGTTCAGGACTTTTATGTCTATTCTACTTTGCCTTAGTTTACATGATTCTTAGTTTATTAGCCTAGAAATGGCCAAGAAAACTTAAGGCTCAATAATTAGTTATAAATATGAAATATCCCCAATTTTTAAGATAAAAACAACTTATAAATGTATTTGTCTGTAAAAATTGTGTATATTTTTATAGAACATCTATTTCTTTTTTTCttttttaatttttttattatactttaaattctagggtacacatgcacaatgtgcaggtttgttgcatatgtatacatgtgccatgttggtgggctgcacccattaactcatcatttatattaggcatatctcctaatgctatacctcccccctccccccaccccacaacaggccctggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgcgatagtttgctgagaatgattgtttccagcttcctccatgtccatacaaaggacatgaactcatcattttttatggatgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcatttttggacatttgtgttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcaacatgatttataatcctttgggtatatgcccagtactgggatggctgggtcaaatggtatttctagttctagatccctgaggaatggccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtgaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggGTCTATTTCTTTAAAACAAAGGGAGGGGAGTCTCTCATTTACATTAGTTTTTTTCATAGCCTTTTGGACTTTGCAATTTCTATGTTTTGGAACCTATTTCTTACAGTTTTTCTATGCTAAACTCTGTCCTGGTCAGTTCCAGAGTGTATGAAGAACAAAATGATGTAATTGTATGTGACCTGGCTGTAGTGGAACAAATTTGACTCTTAAGTATGCAGGCTCTAATTTTCCTGTCTGGTTTTGGTAAGTATTCCTTACATAGGTTTTTTCTTTGAAAATCTGGGATTGAGAGGTTGATGAATGAAAATTAATCCTTTCACTTTGTTGTATATAAGTTTGCAATAATTAGGTCAGAGTGGAGTTTTAAGGTCACGAAGGAGGCTGATGACTTACAAATAATGGGCTCTGATTGGGCAACTACTCATCTGAGTTCCTTCCATTTGACCTAATTAAGCTTATGAAATTTACACTAAGCCATGAGCTCATCTTTAAAAAGTCTTATTAAAAGATTTTCAGCTGTTCCAAATGGGACTTATTAGTGGAATGTGTTTTAAAGGATCATATGAGATGAATGAAAGGTATTTGATCCTTTCTTTCCATAATAATAAAATGATGGTTTGGAAAAAGAGGCTACAGTCTAACCACAGTGCTATTATTAGGCTTTCTTGTTAAACATAGGTCTAAGCCTAAGTATGTCAATACAACAAATACTTACTGTTTCATTTCTAGTAATGAAAAAAAAaaaacaagtctttctggcataaggatgattttcatctggttattttgaaacatttttgtaaaataagtttacatctataaagaatatttttatttgtaaggaggggtatgtctctgtgcactggaagagagggaggactaaatcactgggaagtcttatgataaagaagccattggcttaaatcagcaaagcaagccatcccttggtttaaggtgtttttcctggccatcctgtcttgactagaactttacctacacattcctttttggtttaggcaaattatagtatctaaacctgaagtctcagctctgtgtctttgagatAtaaattttctaccatgtcttctctggaacctgataactatctatctctttaaaatgcaagtctagggagatgactcatcagaaaaagaagaaaa---aggtatttggaaattgtgcaaattaaaGCAGCCCATGATGCCAAAGTCTACACATTCCTGAGTGAGTCAGTTCTGGCCAGTTCTAGCTGGATCAAGAGAGCTCTGCTGGGCAGGCCTGAAGAGCAGCTGGATGGCAGACACCTGAGGAGCCAGGTGCCTGAAATTTCCTCCACCTGCTTGAGGAGCGCCAAAGCTCAGGTGCTGGCTAGACAACCCCTTCTGGCTGCCTAAGCAGATGGAAGAGGAAGGAAAAAAGGTCAGAGGCAGAGTGTTGAACCCTGCCTCCCAGGTGGGTGGAAGATGCCTGTCGCCAAACTAGGGCCCAGCTTACCGGGTGAGATGGGTGAACTGGTGATCTCCCGAGAGAGTGGACGTCAGAACTACATGGTCCTGGACTTCACCTAGGCCAGTGAAGGAGAGAGAGGATTAATGTTAACTGCAGGAGGCCCACTCTAGCCTTAAATTTTGTAATTCAAACCCTTTCCTTGGAGACAAAACAAACATGACAAGGAATTCTGAGGTCAGGGGACAAGAATCACAAGTTCCCCAGTGGGAGACTGAGGAGGCAGTGTCCTTTCTGCCCTTGGTCTACTGGCTAAGAACCTTCCTCAGCCTGACCTTTCCACATTGCACTTTCAGCTCTGTTTGCAATTTTCCTCCTGAGGGATTCCTGCTGAGGGAATCCCAGTGTTCGATACTGAAATCTATACGTTCCTAATGGGTGGTTAAAAAAAAAAACCTCAGCAAGAGAAGCAGAAAATGTTTCCTCTTCCTGAAAAACTGTAGAAAGGCAGGCACCATTCTGGGTGGGACATGGTCCTTGCAAAA
s panTro4.chrUn_GL393527          126950 3137 +    341619 TAGTGATAGAATTAATTAAATATGCCACCAAATTGATTAATTCCTACAGTGTTAAAAGAGAAGCCCTAACAATGTCAGTGACCATGTAACATGGATTTAAGCTACAAGTCATAGAAATGTGATGAGAAACCTCAGCGCTGTAAAACAGAGGGTGGAGGAAAGCTTTTCCTCTCTCAAATGAGCTTTGCGAGTTATACTTCGTGAAGGATAGACAGTTGAAGTGCTCAGGACTTTTATATCTATTCCACTTCGGCTTAGTTTACATGATTCTTAGTTTATTAGCCTAGAAATGGCCAAGAAAACTTAAGGCTCAATAATTAGTTATAAATATGAAATATCCCCAATTTTTAAGATAAAAACAACTTATAAATGTATTTGTCTGTAAAAATTGTGTATATTTTTACAGAACATCTAtttcttt----ctttttt----------ttatactttaaattctagggtacacatgcacaatgtgcaggttcattgcatatgtatacatgtgccatgttggtgtgctgcacccattaactcctcatttatattaggcatatctcctaatgctatccctcccccctccccccaccccacaacaggccctggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttacggatgcatagtattccatggtgtatatgggccacattttcttaatccagtctatcatttttggacatttgggttggttccaagtgtttgctattgtgaatagtgccacaataaacatacgtgtgcgtgtgtctttatagcagcatgatttataatcctttgggtatataaccagtagtgggatggctgggtcaaatggtatttctagttctacatccctgaggaatggccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtgaaagtgttcctatttctccacatcctctccagcacctgttgtttcctaactttttaatgatcgccattctaactggggtgagatggtatctcattgtggttttgatttgcatttctctgatggGTCTATTTCTTTAAAACAAAGGGAGGGGAGTCTCTCATTTACATTAGTTTTTTTCATAGCCTTTTGGACTTCGCAATTTCTATGTCTTGGAACCTATTTCTTACAGTTTTTCTATGCTAAACTCTGTCCTGGTCAGTTCCAGAGTGTATGAAGAACCAAATGATGTAATTGTATGTGACCTGGCTGTAGTGGAACAAATTTGACTCTTAAGTATGCAGGCTCTAATTTTCCTGTCTGGTTTTGGTAAGTATTCCTTACATAAGTTTTTTCTTTGAAAATCTGGGATTGAGAGCTTGATGAATGAAAATTAATCCTTTCACTTTGTTGTATATAGGTTTGCAATAATTAGGTCAGAGTGGAGTTTTAAGGTCATGAAGGGGGCTGATGACTTACAAATAATGGACTCTGATTGGGCAACTACTCATCTGAGTTCCTTCCATTTGACCTAATTAAGCCTGTGAAATTTACACTAAGCCATGAGCTCATCTTTAAAAAGTTTTATTAAAAGATTTTCAGCTGTTCCAAATGGGACTTATTAGTGGAATGTGTTTTAAAGGATCATATCAGATGAATGAAAGGTATTTGATCCTTTCTTTCCTTAATAATAAAATGATGGTTTGGAAAAATAGGCTACAGTCTAACCACAGTGCTATTATTAGGCTTTCTTGTTCAACATAGGTCTAAGCCTAAGTATGTCAATACAACAAA----TACTGTTTCATTTCTAGTAAT--AAAAAAAAACACAAGTCTTTCTGGCATAAGGATGATTTTCATCTGGTTATTTTGAAACATttttgtaaaataaatttccagctataaagaacatttttatttgtaaggaggggcatgtctctgtgcactggaagagagggagaactaaatcactgggaagtcttatgataaagaagccattggcttaaatcagcaaagcaagccgtcccttgctttaaggtgtttttcctggccatcctgtcttgactagaactttacctacaccttcctttttggttcaggcaaattatagtatctaaacctgaagtctcagctctgtgtctttgagatAtaaatgttctaccatgtcttctctggaacctgataactatctatctctttaaaatgcaagtttaaggagatgactcatcagaaaaagaagaaaaaataggtatttggaaattgtgcaaattaaaGCAGCCCCTGATGCCAAAGTCTACACATTCCTGAGTGAGTCAGTTCTGGCCAGTTCTAGCTGGATCAAGAGAGCTCTTCTGGGCAGGCCTGAAGAGCAGCTGGATGGCAGACACCTGAGGAGCCAGGTGCCTGAAACTTCCTCCACCTGCTTGAGGAGCACCAAAGCCCAGGTGCTGGCTGGACAACCCCTTCTGGCTGCCTAAGCAGGTGGCAGAGGAAGGAAAAAAGGTCAGAGGCAGAGTGTTGAACCCTGCCTCCCAGGTGGGTGGAAGATGCCTATCGCCAAACTAGGGCCCAGCTTGCCGGGTGAGGTGGGTGAATTGGTGATCCCCCGAGAGAGTGGACGTCAGAACTACATGGTCCCAGACTTCACCTCAGCCAGCGAAGGAGAGAGAGGGTTAATGTTAACTGCAGGAGGCCCACTCTAGCCTTAAATTCTGTAATTCTAACCCTTCCCTTGGAGACAAAACAAACATGACAAGGAATTCTGAGGTCAGGGGACAAGAATCACAAGTTCCCTAGTGGGAGACTGAGGAGGCAGTGTCCTTTCTGCCCTTGGTCTACTGGCTAAGAACCTTCCTCAGCCTGACCTTTCCACATTGCACTTTCAGCTCTGTTTGCAATTTTACTCCT------TTAGTGCTGAGGGAATCCCAGTGTTCGATCCTGAAATCTATACATTCCTAATGGGTGGTT---AAAAAAAACCTCAGCAAGAGTAGCAGAAAATGTTTCCTCTTCCTGAAAAACTGTAGAAAGGCAGGCACCATTCTGGGTGGGACATGGTCCTTGCAAAA
i panTro4.chrUn_GL393527       C 0 C 0
e gorGor3.chr10                 93739667 6685 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=3087.000000
s hg38.chr14_KI270725v1_random     45985 8 +    172810 GTCTTTAT
s panTro4.chrUn_GL393527          130087 8 +    341619 GTCtttat
i panTro4.chrUn_GL393527       C 0 C 0
s macFas5.chr11                 27964539 8 + 137757926 gttttttt
i macFas5.chr11                N 0 C 0
s papAnu2.chr11                 26706541 8 + 132286798 gttttttt
i papAnu2.chr11                N 0 C 0
e gorGor3.chr10                 93739667 6685 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=-164.000000
s hg38.chr14_KI270725v1_random     45993 2 +    172810 GG
s panTro4.chrUn_GL393527          130095 2 +    341619 tt
i panTro4.chrUn_GL393527       C 0 C 0
s macFas5.chr11                 27964547 1 + 137757926 -g
i macFas5.chr11                C 0 I 1
s papAnu2.chr11                 26706549 1 + 132286798 -g
i papAnu2.chr11                C 0 C 0
s rhiRox1.KN298137v1             1802957 2 +   3333280 gg
i rhiRox1.KN298137v1           N 0 N 0
e gorGor3.chr10                 93739667 6685 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=38077.000000
s hg38.chr14_KI270725v1_random     45995 69 +    172810 t-ttttttttttattttgagatgaagttttgctcttgttgcccagactggagtgcagtggcataatctct
s panTro4.chrUn_GL393527          130097 70 +    341619 tattttatttttattttgagatgaagttttgctcttgttgcccagactggagtgcagtggtgtgatctct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2064294 68 +  72422247 -ttttttttttttttttgagatagagtcttactctt-ttgcccaggctggaacgcagtggtgggatccca
i ponAbe2.chrUn                N 0 C 0
s macFas5.chr11                 27964549 67 + 137757926 --cttttttttttttttgagatagtgtcttactctg-ttgccgacgctggaacgcaatggtgggattcca
i macFas5.chr11                I 1 C 0
s papAnu2.chr11                 26706550 66 + 132286798 ---tttttttgttttttgagatagtgtcttactctg-ttgccgaggctggaacGCAATGGtgggatccca
i papAnu2.chr11                C 0 C 0
e gorGor3.chr10                 93739667 6685 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=2599177.000000
s hg38.chr14_KI270725v1_random     46064 1464 +    172810 gctcactgcaacctctgcctcctgggttcaagcaattctcctacctcag-cctcccgagtagctggaattacaggcacctgccac-catacctggctaattttttgtatttttagtagagatggagttttgccatgttggccatgttggcctcgaactcctgacctcaagtgagccacccgcttctgcctcccaaagtgctgggattacaggcgtgagtcactgtgcccggccAAGATTCTGTTTTGATAGAACAC-TTGAGTCTCTCTCACCTT-GTATTTAGAGAAGTTAGAAAGTAAAagataatgtatatagaaag-ctttttgaaaactcttaagaacttcataaatatggggca-ctatgactaCGCATATGAAAATATTTCCTATCAGTTGGCAGTTACCACCTCTTATAGTGGCATGGAACCTCTTGAGTTAAACCAAGACTCAGTGAGATTGGGTGATTTAGGTAGTGTCATTTTATGAACAAGGGGTACCCTACTCAGTTCTTTTATTTTATTATACTTCTCTTTGACATTCACTCCAGTGAAAGAACTCTTTCAAAAGACATCATGCCTGGTCTCACAGAGATTCAAAGGTGTTTGAGTCCTTCCTTATTATGCCCTTGGAAGATGCTTTGAGGACCCCAGTGATGAAT---CCCAAGAACTCTGTCTCCATTATCCCTGGAATAGGGCACCTCATCACTCTGGTGTTAACCCTGAAGGGCCTTCATAATAATGTGCTTAAAAGAGTCCCCTATTATGTCCTTCAGGATGGAGCTTGACTTGCCCAAATTGCTATGTACATGTTAAAGAGAGGCTGGAACTGAAGTTGGTCATTTCTCACTGGAtcagtcaacaaggtttgagtactttctgtgtgctctgcatcattctgagt----------acagaataaggcatggctcctgccttcaaggagtatggaatttaatagacgatgacaACATACATGATTGTAAATCTATCTACATGAGAGTGAATAATTGTGAGATTCCTAATAAACGGCAAGATATGTTCTGAAAATGTGAAACATAAATGAGGTTGAAGA--AATTGTGAAAGGTTTAGCAGAGGAGGAATAATTCGTCAGGTTCTTTAAATACAAGTAAAGGGGAAAGGAAGGACCATTTTTAAGTTTAGATATTCCAAGGGTTAGTGGTGAGGTGGATTATGGTATGTCTTCTCG-TTGATGAGGGTGGAGACTGGCGAATAGTGGAAAATAAAGTTAAATAGTTAGGGTGGGGCCAAATTATGGGTTTTAATAAAAGCCAGACATAGAAATTTAGATTGGGGTGGTAGAAAAATGAAGGCTTTAAACGTTTTTAAGCCAATGAATGACATCATAC-AAGTTCTATATAAAGAGCAGTGATTTCAGGATGGGAGAGAA-TGGTATCAGGAAGACCCACTTGAATGCTGGTAAC------------------------------TAATGTTACTAACAGTGCCATTAGTAACATTAATGT
s panTro4.chrUn_GL393527          130167 1473 +    341619 gctcattgcaacctctgcctcctgggttcaagcaattctccgacctcag-cctcccaagtagctggaattacaggcacctgccac-cacacctggctaattttttgcatttttagtagagatggagttttgccatgttggccatgttggtctcgaactcctgacctcaagtgagccacccgcttctgcctcccaaagtgctgggattacaggcgtgagtcactgtgcccggccAAGGTTCTGTTTTGATAGAACAC-TTGTGTCTCTCTCACCTT-GTATTTAGAAAAGTTAGAAAGTAAAGGATAATGTATATAGAAAG-CTTTTTGAAGACTCTTAAGAAGTTCATAAATATGGGGCA-CTATGACTATGCATATGAAAATATTTCCTATCAGTTGACAGTTACCACCTCTTATAGTGGCATGGAACCTCTTCAGTTAAACCAAGGCTCAGTGAGATTTGGTGAGTTAGGTAGTGTCATTTTATGAACAAGGGGGACCCTACTCAGGTCTTTTATTTTATTATACTTCTCTTTGACATTCACTCCAGTTAAAGAACTCTTTCAAAAGACCTCATGCCTGGTCTTACAAAGATTCAAAGGTGTTTGAGTCCTTCCTTATTATGCCCTTGGAAGATGCGTTGAGGACTCCAGTGATGAAT---CCCAAGTACTCTGTCTCCATTGTCCCTGGTATAGGGCACCTCATCACTCTGGTGTTATCCCTGAAGGGTCTTCATAATAATGTGCTT-AAAGAGTCCCCTATTATGTCCTTCAGGATGGAGCTTGACTTGCCCAAATTACTATGTACATGTTAAAGAGAGGCTGGAACTGAAGTTGGTAATTTCTCACTGGAtcagtcaacaagatttgagtactttctgtgtgctctgcatcattctgagtactctgggggacagaataaggcatggctcctgccttcaaggagtatggaatttaatagaagatgacaacatACATGATTGTAAATCTATCTACATGAGAGTGCCTAATTGTGAGATTCCTAATAAATGGCAAGTTATGTTCTGAAAACGTGAAACGTAAATGAGGTTGAAGA--AATTGTGAAAAGTTTAGCAGAGGAGGAATAATTCATCAGGTTCTTTAAATACAAGTAAAGGGGAAAGGAAGGACCATTTTTAAGTTTAGATATTCCAAGGGTCAGTGGTGAGGTTGATTATGGTATGTCTTCTCG-TTGATGAGGGAGGAGACTGGCGAATAGTGGAAAATAAAGTTAAATAGCTAGGGTGGGGCCAAATTATGGGTTTTAATAAAAGCCAGGCATAGAAATTTAGATTGGGGTGGTAGAAAAAGGAAGGCTTTAAAAGTTTTTGAGCCAATGAATGACATCATAC-AAGTTCTATATAAACAGCAGTGATTTCAGGATGGGAGACAA-TGGCATCAGGAAGACCCACTTGAATGCTGGTAAG------------------------------TAATGTTACTAACAGTGCCATTAGTAACATTAATAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2064362 1483 +  72422247 gctcactgcagtctcagcctcccgggttcaagcgattctcccatctcagccctcccgagtagctgggattacagccatgcactacgcatgcctggctaa-tttttgtatttttagtagagatggggtttctccacattggccaggctggtctcgaactcttgacctcaggtgacccacccgccttggcctcccaaagtggtgggattacaggcatgagtcactgtgcctggccAAGACTCTGTTTTGATAGAACAC-TTGTGTCTCTCTCACCTCAGTATTTAGAAAAGTTAGAAAGTAAAGGATAATGTATATAGAAAGCCTTTTTGAAGACTCTTAAGAAGTTCATAAATATGGGGCACCTACGACTATGCATATGAAAATATTTCCTATCAGTTGGCAGTTACCACCTCTTATAGTGGCATGGAACCTCTTGAGTTAAACCAAGGCTCAGTGAGATTTGGTGATTTAGGTAGTGTCATTTTATGAACAAGGAGAACCCTACTCAGGTCTTTTATTTTATTATACTTCTCTTTGACGTTCACTCCAGTTAAAGAACTCTTTCAAAAGACCTCATGCCTGGTCTCATGGAGATTCAAAGGTGTTTGAGTCCTTCCTTATTATCCCCTTGGAAGATGCTTTGAGGACCCCAGTGATGAATAGGCCCAAGAACTCTATCTCCATTATCCCTGGTATAGGGCACCTCATCACCCTGGTGTTATCCCTGAAGGGCCTTCATAATAATGTGCTT-AAAGAGTCCCCTATTATTCCCTTCAGGATGGAGCTTGACTTGCCCAAATTGTTATGTACATGTTAAAGAGAGGCTGGAACTGAAGTTGGTCATTTCTCACTGGAtcagtcaacaagatttgagtactttctgtgtgctctgcatcattctgagtactctgggggacagaataaggcgtggctcctgccttcaaggagtatggaatttaatagaagatgacaacatACATGATTGTAAATCTATCTACATGAGAGTGCCTAATTGTGAGATTCCTAATAAACGGCAAGATATGTTCTGAAAATGTGAAACATAAATGAGGTTGAAGAAGAATTGTGAAAAGTTTAGCAGAGGAGGAATAATTCGTCAGATTCTTTAAATACAAGTAAAGGGGAAAGGAAGGACCATTTTTAAGTTTAGATATTCCAAGGGTTAGTGGTGAGGTTGATTATGGTATGTCTTCTCGATTGATGAGGGAGGAGACTGGCGAATAGTGGAAAATAAAGTTAAATAGCTAGGGTGGGGCCAAATTATGGGTTTTAATAAAAGCCAGGCATAGAAATTTAGATTGGGGTGGTAGAAAAAGGAAGGCTTTAAAAGTTTTTGAGCCAATGAATGACATCATAC-AAGTTCTATATAAAGAGCAGTGATTTCAGGATGGGAGAGAA-TGGCATCAGGAAGACCCACTTGAATGCTGGTAAG------------------------------TAATGTTACTAACAGTGCCATTAGCAACATCAATGT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27506851 1466 + 134985053 gctcactgcaacctctgcctcccaggttcaagcgattctcccatctcag-cctcccgagtagctgggattacaggcatgcaccac-cacacctggctaa-tttttgtatttttagtagagatggggttttgccacattggccaggctggtctcgagctcctgacctcaggtgacccgcccacctcagcctcccaaagttctgggattacaggcgtgagtcaatgcgcctggccAAGA--CTGTTTTGATAGAACACTTTGTGTCTCTCTCACCTT-GTATTTAGAAAAGTTAGAAAGTAAAGGATCATGTATATAGAAAG-CTTTTTGAAGACTCTTAAG---TTCATAAATATGGGGCA-CTACGACTATGCATATGAAAATATTTCCTATCAGTTGGCAGTTACCACTTC-TATAGTGGCATGGAACCTCTTGAGTTaaaccaaggctcagtgagatttggtgatttaggtagtgtcattgtgtgaacaagcaggactctactcaggtcttTTATTTTATTATACTTCCCTTTGACATTCACTCCAGTTAAAGAACTCTTTCAGAAGACCTCATGCCTGTTCTCATGGAGATTCAAGGGTGTTTGAGTCCTTCCTTATTATCCCCTTGGAAGATGCTTTGAGAACCCCAGTGATGAAT---CCCAAGAACTCTGTCTCCATTATCCCTGGTATGGAGCACCTCATCACTCCAGTGTTATCCCTAAATGGCCTTCATAGTAATGTGCTT-AAAGAGTCTCCTATTATGTCCTTTAGAATGGAGCCTGACTTGCCCAAATTGCTATGTACATGTTAAAGAGAGGCTGAAACTGAAGTTGGTCGTTTCTCACTGGATCAGTCAACAAGATTTCAGTACTTTCTGTGGGCTCTGCATCGTTCGGAGTACTTTGGGGGACAgaataaggcgtggctcctgccttcaaggagtatggaatttaatagaagatgacaATGTACATGACTGTAAATCTATCTACATGAGAGTGCCTAATTGTGAGATTCCTAATAAAT-GCAAGACAGGTTCTGAAAACGTGAAACATAAATGAGGTTGAAGA--AATTGTGAAAAGTTTAGCAGAGGAGGAATAATTTGTCAGGTTCTTTAAATACAAATAAAGGGGAAAGGAAGGACCATTTTTAAGTTTAGATATTCCAAGGGTTAGTGGTGAGGTTGATTATGTTATGTCTTCTCG-TTGATGAGGGAGGAGACTGGCAAATAGTGGAAAATAAAGTTAAATAGCTAGGGTGGGGTCAAATTATGGGTTTTAATAAAAGCCAGGCATAGAAATTTAGATTGGGGTGGTAGAAAAAGGAAGACTTTAAAAGTTTTTGAGCCAATGAATGACATCATAC-AAGTTCTGTATAAAGAGCAGTGATTTCAGGATGGGAGAGAA-TGGCACCAGGAAGACCCACTTGAATGCTGGTAAG------------------------------TAATGTTACTAACAGTGCCATTAGTAACATTAATGT
i rheMac3.chr11                N 0 C 0
s macFas5.chr11                 27964616 1468 + 137757926 gctcactgcaacctctgcctcccaggttcaagcgattctcccatctcag-cctcccgagtagctgggattacaggcatgtaccac-cacacctggctaa-tttttgtatttttagtagagatggggttttgccacattggccaggctggtctcgagctcctgacctcaggtgacccgcccacctccgcctcccaaagttctgggattacaggcgtgagtcactgtgcctggccAAGACTCTGTTTTGATAGAACACTTTGTGTCTCTCTCACCTT-GTATTTAGAAAAGTTAGAAAGTAAAGGATCATGTATATAGAAAG-CTTTTTGAAGACTCTTAAG---TTCATAAATATGGGGCA-CTACGACTATGCATATGAAAATATTTCCTATCAGTTGGCAGTTACCACTTC-TATAGTGGCATGGAACCTCTTGAGTTAAACCAAGGCTCAGTGAGATTTGGTGATTTAGGTAGTGTCATTGTGTGAACAAGCAGGACTCTACTCAGGTCTTTTATTTTATTATACTTCCCTTTGACATTCACTCCAGTTAAAGAACTCTTTCAGAAGACCTCATGCCTGTTCTCATGGAGATTCAAGGGTGTTTGAGTCCTTCCTTATTATCCCCTTGGAAGATGCTTTGAGAACCCCAGTGATGAAT---CCCAAGAACTCTGTCTCCATTATCCCTGGTATGGAGCACCTCATCACTCCAGTGTTATCCCTAAATGGCCTTCATAGTAATGTGCTT-AAAGAGTCTCCTATTATGTCCTTTAGAATGGAGCCTGACTTGCCCAAATTGCTATGTACATGTTAAAGAGAGGCTGAAACTGAAGTTGGTCGTTTCTCACTGGAtcagtcaacaagatttcagtactttctgtgggctctgcatcgttctgagtactttgggggacagaataaggcgtggctcctgccttcaaggagtatggaatttaatagaagatgacaatgtaCATGACTGTAAATCTATCTACATGAGAGTGCCTAATTGTGAGATTCCTAATAAAT-GCAAGACAGGTTCTGAAAACGTGAAACATAAATGAGGTTGAAGA--AATTGTGAAAAGTTTAGCAGAGGAGGAATAATTTGTCAGGTTCTTTAAATACAAATAAAGGGGAAAGGAAGGACCATTTTTAAGTTTAGATATTCCAAGGGTTAGTGGTGAGGTTGATTATGTTATGTCTTCTCG-TTGATGAGGGAGGAGACTGGCAAATAGTGGAAAATAAAGTTAAATAGCTAGGGTGGGGTCAAATTATGGGTTTTAATAAAAGCCAGGCATAGAAATTTAGATTGGGGTGGTAGAAAAAGGAAGACTTTAAAAGTTTTTGAGCCAATGAATGACATCATAC-AAGTTCTGTATAAAGAGCAGTGATTTCAGGATGGGAGAGAG-TGGCACCAGGAAGACCCACTTGAATGCTGGTAAG------------------------------TAATGTTACTAACAGTGCCATTAGTAACATTAATGT
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26706616 1479 + 132286798 gctcactgcaacctctgcctcccaggttcaagcgattctcccatctcag-cctcccgagtagctgggattacaggcatgcaccac-cacacctggctaa-tttttgtatttttagtagagatggggttttgccacattggccaggct---------------------ggtgacccgcccacctcggcctcccaaagttctgggattacaggcgtgagtcactgtgcctggccaagactcTGTTTTGATAGAACACTTTGTGTCTCTCTCATCTT-GTATTTAGAAAAGTTAGAAAGTAAAGGATCATGTATATAGAAAG-CTTTTTGAAGACTCTTAAG---TTCATAAATATGGGGCA-CTACGACtatgcatatgaaaatattttctatcagttGGCAGTTACCACCTCTTATAGTGGCATGGAACCTCTTGAGTTCAACCAAGGCTCAGTGAGATTTGGTGATTTAGATAGTGTCATTTTATGAACAAGCAGGACTCTACTcaggtcttttattttattatacttccCTTTGACATTCACTCCAGTTAAAGAACTCTTTCAGAAGACCTCATGCCTGTTCTCATGGAGATTCAAGGGTGTTTGAGTCCTTCCTTATTATCCCCTTGGAAGATGCTTTGAGAACCCCAGTGATGAAT---CCCAAGAACTCTGTCTCCATTATCCCTGGTGCGGAGCACCTCATCACTCCAGTGTTATCCCTAAAGGGCCTTTATAGTAATGTGCTT-AAAGAGTCTCCTATTATGTCCTTTAGGATGGAGCCTGACTTGCCCAAATTGCTATGTACATGTTAAAGAGAGGCTGAAACTGAAGTTGGTCGTTTCTCACTGGATCAGTCAACAAGATTTCAGTACTTTCTGTGTGCTCTGCATCGTTCTGAGTACTTTGGGGGACAGAATAATGTGTggctcctgccctcaaggagtatGGAATTTAATAGAAGATGACAATGTACATGACTGTAAACCTATCTACATGAGAGTGCCTAATTGTGAGATTCCTAATAAAT-GCAAGACAGGTTCTGAAAACGTGAAACATAAATGAGGTTGAAGA--AATTGTGAAAAGTTTAGCAGAGGAGGAATAATTTGTCAGGttctttaaatacaaataaaggggaaaggaaggacCATTTTTAAGTTTAGATATTCCAAGGGTTAGTGGTGAGGTTGATTATGTTATGTCTTCTCG-TTGATGAGGGAGGAGACTGGCAAATAgtggaaaataaagttaaatagcTAGGGTGGGGTCAAATTATGGGTTTTAAtaaaagccaggcatagaaaTTTAGATTGGGGTGGTAGAAAAAGGAAGACTTTAAAAGTTTTTGAGCCAATGAATGACATCATACTAAGTTCTGTATAAAGAGCAGTGATTTCAGGATGGGAGAGAA-TGGCACCAGGAAGACCCACTTGAATGCTGGTAAGTAATGTTACTAACAGTGCCATTAGTAACATTAATGTTACTAACAGTGCCATTAGTAACATTAATGT
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 26999853 1464 + 128539186 gctcattgcaacctctgcctcccgggttcaagcgattctcccatctcag-cctcccgagtagccgggatgacaggcatgcaccac-cacacctggctaa-tttttgtatttttagtagagatggggtttcgccacgttggccaggctggtctcgagctcctgacctcaggtgacccgcccacctcggcctcccaaagttctgggattacaggcgtgagtcactgtgcctggccAAGACTCTGTTTTGATAGAACACTTTGTGTCTCTCTCACCTT-GTATTTAGAAAAGTTAGAAAGTAAAGGATCATGTATATAGAAAG-CTTTTTGAAGACTCTTAAG---TTCATAAATATGGGGCA-CTACAACTATGCATATGAAAATATTTCCTATCAGTTGGCAGTTACCACTTCTTATAGTGGCATGGAACCTCTTGAGTTAAACCAAGGCTCAGTGAGATTTGGTGATTTAGGTAGTGTCATTGTATGAACAAGCAGGACTCTACTCAGGTC-----TTTTATTATATTTCCCTTTGACATTCACTCCAGTTAAAGAACTCTTTCAGAAGACCTCATGCCTGTTCTCATGGAGATTCAAGGGTGTTTGAGTCCTTCCTTATCATCCCCTTGGAAGATGCTTTGAGAACCCCAGTGATGAAT---CCCAAGAACTCTGTCTCCATTATCCCTGGTATGGAGCACCTCATCACTCCAGTGTTATCCCTAAAGGGCCTTCATAGTAATGTGCTT-AAAGAGTCTCCTACTATGTCCTTTAGGATGGAGCCTGACTTGCCGAAATTGCTATGCACATGTTAAAGAGAGGCTGAAACTGAAGTT-GTTGTTTCTCACTGGAtcagtcaacaagatttcagtactttctgtgtgctctgcgtcgttctgagtactttgggggacagaataaggcgtggctcctgccttcaaggagtatggaatttaatagaagatgacaatgtaCATGACTGTAAACCTATCTACATGAGAGTGCCTAATTGTGAGATTCCTAATAAAT-GCAAGACAGGTTCTGAAAACGTGAAACATAAATGAGGTTGAAGA--AATTGTGAAAAGTTTAGCAGAGGAGGAATAATTTGTCAGGTTCTTTAAATACAAATAAAGGGGAAAGGAAGGACCGTTTTTAAGTTTAGATATTCCAAGGGTTAGTGGTGAGGTTGATTATGTTATGTCTTCTCG-TTGATGAGGGAGGAGACTGGCAAATAGTGGAAAATAAAGTTAAATAGCTAGGGTGGGGTCAAATTATGGGTTTTAATAAAAGCCAGGCATAGAAATTTAGATTGGGGTGGTAGGAAAAGGAAGACTTTAAAAGTTTTTGAGCCAATGAATGACATCATAC-AAGTTCTGTATAAAGAGCAGTGATTTCAGGATGGGAGAGAATTGGCACCAGGAAGACCCACTTGAATGCTGGTAAG------------------------------TAATGTTACTAACAATGCCATTAGTAACATTAATGT
i chlSab2.chr11                N 0 C 0
e gorGor3.chr10                 93739667 6685 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=10444.000000
s hg38.chr14_KI270725v1_random     47528 4 +    172810 TACT
s panTro4.chrUn_GL393527          131640 4 +    341619 TACT
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93746352 4 - 147764049 TACT
i gorGor3.chr10                I 6685 I 4433
s ponAbe2.chrUn                  2065845 4 +  72422247 TACT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27508317 4 + 134985053 TACT
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27966084 4 + 137757926 TACT
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26708095 4 + 132286798 TACT
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27001317 4 + 128539186 TACT
i chlSab2.chr11                C 0 C 0
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=1557441.000000
s hg38.chr14_KI270725v1_random     47532 901 +    172810 AGGGCCTGGACTGATATGCTGATGGAAGTGAGAATGAAGAATAAGGTGGGATGAAAGAGATTTTGACAAGAGTTTTTTAATGAACCTGAAACGGGAAAGGGCGAGATTGACTAAGCCTGCT-------------------------------TGCCATGGACAGCAATGGGGTTGCTAGAAGATTAGCTGTGCGGAAAAAGTTATGCATTTACCTTTGAGCAT-----AATGcaattgactctccatattcatgggttctgcatccaccaa--ttcaaacaactgtggaacaaaattgtcagaaaaaacaatacaatgataaaaaatgatacaaataaaaaacaacatggtataccaactatttacatagca--tttacatcgtattaaatgttattaagta-atctagagatt-atttaaagtatctaggaggatgtgtgtaggttatatgcaaatactacactattttataccagtaacttgagcatccatggattttggtatacaagggggatcctggaacaaattcgccatgcatatcaaaggatgactgTATGAG-TTATCTGTAAA-ATGGTTTGGTTGAAATGTTTAGAAAACAGCTAGAAA-TACAAGA-CTGGCTGTTGGATGAAAAAAACATAGGACTAGG-AAATTCAGGTATGCTAGTCTTTTTGAGTATTGCTTAAAGCCAT-GGGAAAAGAGCTCTCTGTGAG-TTCCAAGACAGATGCAAGGACTGGCATTCATGCACAGCTTCTAGCAGTTAAATCTGAAGAGTTCTTAGTATGCATGTTGACTGAAATTACTTTAGAAGTAATTTTTCTC-CTGGTGAT--AAAAGGCATGTAA-GGCTATTTTAGGAAATTGAAAAATGCTAAAAGGTAT-AAAGAAAAAGAAAAGATAATCATTAATAGTACGTTAGTAAACAAGATTTGACTAAAGATATCACTT
s panTro4.chrUn_GL393527          131644 906 +    341619 AGGGCCTGGACTGATATGCTGATGGAAGTGAGAATGAAGAATAAGGTGGGATGAAAGAGAGTTTGACAAGAGTTTTTTAATGAACCTGAAACGGGAAAGGGCGAGATTAACTAAGCCTGCt-------------------------------tgccatggacagcaatggggttgctagaagattagctgtgtggaaaaatttacgcatttacctttgggcataatgaaatgaaattgactctccatattcatgggttctgcatccaccga--ttcaaacaactgtggaacaaaattttcagaaaaaacaatacaatgataaaaaatgatacaaataaaaaacaacatggtataccaactatttacatagca--tttacatcgtattaagtgttattaagta-atctagagatg-atttaaagtatataggaggatgtgtgtaggttatatgcaaatactacactattttataccagtaacttgagcatccatggattttggtatacaagggggatcctggaaccaattccccatgcatatcaaaggatgactgtatgag-ttatctgtaaa-atggtttggttgaaatgtttagaaaacagctagaaa-tacaaga-ctggCTGTTGGATGAAAAAAACATAGGACTAGG-AAATTCAGGTATGCTAGTCTTTTTGAGTATGGCTTAAAGCCAT-GGGAAAAGAGCTCTCTGTGAG-TTCCAGGACAGATGCAAGGACTGGCATTCATGCACAGCTTCTAACAGATAAATCTGAAGAGTTTTTAGTATGCATGTTGACTGAAATTACTTTAGAAGTAAtttttctc-ctggtgat--aaaaggcatgtaa-ggctattttaggaaattgaaaaatgcaaaaaggtat-aaagaaaaagaaaagatcatcattaatagtacattagtaaacaagatttgactaaagatatgactt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2065849 923 +  72422247 AGGGCCTGGACTGATATGCTGATGGAGGTGAGAATGAAGAATAAGGTAGGATGAAAGAGATTTTGACAAGAGTTTTTTAATGAACCTGAAACGGGAAAGGGTGAGATTAACTAAGCCTGCT-------------------------------TGCCATGGACAGCAATGGAGTTGCTAGAAGATTAGCTGTGGGGAAAAAGTTATGCATTTACCTTTAGGCATAATGAAATGcaattgactgtccatattcatgggttctgcatccactgaagttcaaacaactgaggaacaaaattgtcagaaaaaacaatacaacaataaaaaatgatacaaatagaaaacaacatggtataccaactatttacatagcacttttacatcgtattaagtattattaagtacatctagagatgcatttaaagtatataggaggatgtgtgtaggttatatgcaaatactacactattttataccagtcacttgagcatccatggattttggtatacaagggggatcctgaaaccaattccccatgcatatcaaaggatgactgTATGAGCTTATCTGTAAACATGGTTTGGTTGAAATGTTTAGAAAACAGCTAGAAACTACAAGACCTGGCTGTTGGAT-AAAAAAACATAGGACTAGGAAAATTCAGGTATGCTAGTCTTTTTGAATATTGCTTAAAGCCATCGGGAAAAGAGCTCTCTGTGAGTTTCCAAGACAGATGCAAGGACTGGCATTTATGCACAGCTTCTAACAGATAAATCTGAAGAGTTCTTAGTATGCATGTTGACTGAAATTACTTTAGAAGTAATTTTTCTCACTGGTGATTAAAAGAGCATGTAAGGGCTATTTTAGGAAATTGAAAAATGCAAAAAGGTATAAAAAAAAAAGAAAAGATAATCATTAATAGTACATTAGTAAACAAGATTTGACTAAAGATATGACTT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27508321 932 + 134985053 AGGGCCTGGACTGATATGCTGATGGAAGTGAGAATAAAGAATAAGGTGGGATGAAAGAGATTTTGACAAGAGCTTTTTAATGAACCTGAAATGGAAAAGGGAGAGATTAATTAAGCCTGCTTCCCAAACTTTCTGACTGGAAGAGA-GTTTATGCCATGGACAGCCATGGGGTTGCTAGAAAATTAGCTGTGGGGAAAAAATTATGCATTTGCCTTTGGGCATAATGAAATGcaattggccctccatattcatgggtcctgcatccgctga--ttcaaacaactgtggaacaaaattgtcagaaaaaacaatacaacaataaaaaaagatacaaatataaaacaacacggtataccaactatttacatagca--tttatatcatatgaagtatta-taagta-atctagaggtg-atttaaagtatataggagtatatgtgtacgttatatgcaaatactgcactattttatatcagtaacttgagcatccatggattttggtatacatgggggatcttggaaccaattccccatgcatatcaaaggatgactgTATGAG-TTATCTGTAAA-ATGTTTTGGTTGAAGTGTTTAGAAAACAGGTAGAAA-TATAAGA-CTGACTGTTGGATGAAAAAAACATAGGACTAGG-AAATTCAGGTATGCTAGTCTTTTTGAGTATTGCTTAAAGCCAT-GGGAAAAGACCTCTC--TGAG-TTCCAAGACAGATGCAGAGACTGGCATTCATGCACGGCTTCTAATAGATAAATCTGAAGAGTTCTTAGTATGCATGTTGACTGAAATTACTTTAGAAGTAAtttttctc-ctggtgat--aaaaggcatgtaa-ggctgttttaggaaactgaaaaatgcaaaaaggtac-aaagaaaaagaaaaaataatcattaatagtactttagtaaacaagttttgtctaaagata-gactt
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27966088 932 + 137757926 AGGGCCTGGACTGATATGCTGATGGAAGTGAGAATAAAGAATAAGGTGGGATGAAAGAGATTTTGACAAGAGCTTTTTAATGAACCTGAAATGGAAAAGGGAGAGATTAATTAAGCCTGCTTCCCAAACTTTCTGACTGGAAGAGA-GTTTATGCCATGGACAGCCATGGGGTTGCTAGAAAATTAGCTGTGGGGAAAAAATTATGCATTTGCCTTTGGGCATAATGAAATGcaattggctctccatattcatgggttctgcatccactga--ttcaaacaactgtggaacaaaattgtcagaaaaaacaatacaacgataaaaaaagatacaaatataaaacaacacggtataccaactatttacatagca--tttatatcatattaagtatta-taagta-atctagaggtg-atttaaagtatataggagtatatgtgtacgttatatgcaaatactgcactattttatatcagtaacttgagcatccatggattttggtatacatgggggatcttggaaccaattccccatgcatatcaaaggatgactgTATGAG-TTATCTGTAAA-ATGTTTTGGTTGAAGTGTTTAGAAAACAGGTAGAAA-TATAAGA-CTGACTATTGGATGAAAAAAACATAGGGCTAGG-AAATTCAGGTATGCTAGTCTTTTTGAGTATTGCTTAAAGCCAT-GGGAAAAGACCTCTC--TGAG-TTCCAAGACAGATGCAGAGACTGGCATTCATGCACAGCTTCTAATAGATAAATCTGAAGAGTTCTTAGTATGCATGTTGACTGAAATTACTTTAGAAGTAAtttttctc-ctggtgat--aaaaggcatgtaa-ggctgttttaggaaactgaaaaatgcaaaaaggtat-aaagaaaaagaaaaaataatcattaatagtactttagtaaacaagttttgtctaaagata-gactt
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26708099 930 + 132286798 AGGGCCTGGACTGATACGCTGATGGAAGTGAGAATAAAGAATAAGGTGGGATGAAAGAGATTTTGACAAGAGTTTTTTAATGAACCTGAAATGGGAAAGG----GATTAATTAAGGCTGCTTCCCAAACTTTCTGACTGGAAGCGAGGTTCATGCCATGGACAGCCATGGGGTTGCTAGAAAATTAGCTGTGGGGAAAAAATTATGCATTTGCCTTTGGACGTAATGAAATGCAATTGGCCCTCCATAttcatgggttctgcatccactGA--TTCAAACAACTGTGGAacaaaattgtcaaaaaaaaaaatacagcaataaaaaatgatacaaataaaaaacaacacgGTATaccaactatttacatagca--tttacatcatattaagtatta-taagta-atctagaggtg-atttaaagtatataggagtATGTGTGTacgttatatgcaaatactacactattGTATATCAGtaacttgagcatccatggattttggtatacaCGGGGGATCttggaaccaattccccatgCATGTCAAAGGATGACTGTATGAg-ttatctgtaaa-atgttttGGTTGAAGTGTTTAGAAAACAGCTAGAAA-TATAAGA-CTGGCTGTTGGATGAAGAAAACATAGGACTAGG-AAATTCAGGTATGCTAGTCTTTTTGAGTATTGCTTAAAGCCAT-GGGAAAAGACCTCTC--TGAG-TTCCAAGACAGATGCAGAGACTGGCATTCATGCACAGCTTCTAATAGATAAATCTGAAGACTTCTTAGTATGCATGTTGACTGAAATTACTTCAGAAGTAATTTTTCTC-CTGGTGAT--AAAAGGCATGTAA-GGCTCTTTTAGgaaattgaaaaatgcaaaagggtat-aaagaaaaagaaaaaataatcattaataGTACTTTAGTAAACAAGATTTGTCTAAAGATACGACTT
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27001321 930 + 128539186 AGGGCCTGGACTGATACGCTGATGGAAGTGAGAATAAAGAATAAGGTGGGATGAAAGAGATTTTGACAAGAGTTTTTTAATGAACCTGAAATGGGAAAGGGAGAGATTAATTAAGCCTGCCTCCCAAACTTTCTGACTGGAAGAGAGGTTCATGCCATGGACAGCCATGGGATTGCTAGAAAATTAGCTGTGGGGAAAAAAATATGCATTTGCCTTTGGGTGTAATGAAATGcaattggtcctccatattcatggggtctgcatccactga--ttcaaacaactgtggaacaaaattgtcagaaaaaacaatacaacaataaaaaatgatacaaataaaaaataacacggtatgccaactatttacatagca--tttacatcatat----tatta-taagta-atctagaggtg-atttaaagtatataggagtatgtgtgtacgttatatgcaaatactacaccattttatatcagtaacttgagcatctatggattttggtatacacgggggatcttggaatcaattccccatgcatatcaaagggtgactgTATGAG-TTATCTGTAAA-ATGTTTTGGTTGAAGTGTTTAGAAAACAGCTAGAAA-TATAAGA-CTGGCTGTTGGATGAAAAAAACATAGGACTAGG-AAATTCAGGTATGCAAGTCTTTTTGAGTATTGCTTAAAGCCAT-GGGAAAAGAGCTCTC--TGAG-TTCCAAGACAGATGCAGAGACTGACATTCATGCACAGGTTCTAATAGATAAATCTGAAGAGTTCTTAGTATGCATGTTGACTGAAATTACTTTAGAAGTAATTTTTGTC-CTGGTGAT--AAAAGGCATGTAA-GGCTATTTTAGGaaattgaaaaatgcaaaaaggtgt-aaagaaaaagaaaaaATAATCATTAATAGTACTTTAGTAAACAAGATTTGTCTAAAGATACGACTT
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=5381.000000
s hg38.chr14_KI270725v1_random     48433 8 +    172810 TCCTCCCG
s panTro4.chrUn_GL393527          132550 8 +    341619 tcctcccg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066772 8 +  72422247 TCCTTCTA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509253 8 + 134985053 tccttcta
i rheMac3.chr11                C 0 C 0
s chlSab2.chr11                 27002251 8 + 128539186 TCCTTCTA
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e papAnu2.chr11                 26709029 0 + 132286798 C
e macFas5.chr11                 27967020 0 + 137757926 C
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=6168.000000
s hg38.chr14_KI270725v1_random     48441 11 +    172810 CTTGTTTTCTT
s panTro4.chrUn_GL393527          132558 11 +    341619 cttgttttctt
i panTro4.chrUn_GL393527       C 0 I 22
s rheMac3.chr11                 27509261 11 + 134985053 cttgttttctt
i rheMac3.chr11                C 0 I 22
s chlSab2.chr11                 27002259 11 + 128539186 CTTGTTTTCTT
i chlSab2.chr11                C 0 I 92
e gorGor3.chr10                 93746356 4433 - 147764049 I
e papAnu2.chr11                 26709029  0 + 132286798 C
e macFas5.chr11                 27967020  0 + 137757926 C
e nomLeu3.chr7b                114487759 44409 + 115148730 I
e ponAbe2.chrUn                  2066780  0 +  72422247 C

a score=0.000000
s hg38.chr14_KI270725v1_random     48452 6033 +    172810 [encoded data, 6033 characters]
e gorGor3.chr10                 93746356 4433 - 147764049 I
e rheMac3.chr11                 27509272   22 + 134985053 I
e chlSab2.chr11                 27002270   92 + 128539186 I
e papAnu2.chr11                 26709029    0 + 132286798 C
e macFas5.chr11                 27967020    0 + 137757926 C
e nomLeu3.chr7b                114487759 44409 + 115148730 I
e ponAbe2.chrUn                  2066780    0 +  72422247 C
e panTro4.chrUn_GL393527          132569   22 +    341619 I

a score=1533.000000
s hg38.chr14_KI270725v1_random     54485 8 +    172810 tcCTCCCG
s macFas5.chr11                 27967020 8 + 137757926 tccttcta
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709029 8 + 132286798 TCCTTCTA
i papAnu2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e rheMac3.chr11                 27509272 22 + 134985053 I
e chlSab2.chr11                 27002270 92 + 128539186 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I
e ponAbe2.chrUn                  2066780 0 +  72422247 C
e panTro4.chrUn_GL393527          132569 22 +    341619 I

a score=22797.000000
s hg38.chr14_KI270725v1_random     54493 57 +    172810 CTTGTTTTCTTATGCATATAAAGGGATAGGAAAtatgtatgtatgtatgtatgtatg
s ponAbe2.chrUn                  2066780 57 +  72422247 CTTGTTTTCTTATGCATATAAAGGGATAGGAAAtatgtatgtatgtatgtatgtatg
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr11                 27967028 50 + 137757926 cttgttttcttatgcatataaagggataggaaatatgtgtgtatgtatgt-------
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709037 43 + 132286798 CTTGTTTTCTTATGCATataaagggataggaaatatgtgtgta--------------
i papAnu2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e rheMac3.chr11                 27509272 22 + 134985053 I
e chlSab2.chr11                 27002270 92 + 128539186 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I
e panTro4.chrUn_GL393527          132569 22 +    341619 I

a score=28025.000000
s hg38.chr14_KI270725v1_random     54550 37 +    172810 tatgtatgtatgtatgtGTGTGTAtaggatcatgcac
s panTro4.chrUn_GL393527          132591 37 +    341619 tatatatgtatgtatgtgtgtgtataggatcacgcac
i panTro4.chrUn_GL393527       I 22 C 0
s ponAbe2.chrUn                  2066837 21 +  72422247 ----------------tgtgtgtataGGATCATGCAC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509294 37 + 134985053 tatgtgtgtatgtatgtgtgtgtataggatcatgcac
i rheMac3.chr11                I 22 C 0
s macFas5.chr11                 27967078 20 + 137757926 -----------------gtgtgtataggatcatgcac
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709080 28 + 132286798 ---------atgtatgtatgtgtgtaggaTCATGCAC
i papAnu2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e chlSab2.chr11                 27002270 92 + 128539186 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=7989.000000
s hg38.chr14_KI270725v1_random     54587 7 +    172810 -tatatat
s panTro4.chrUn_GL393527          132628 7 +    341619 -tatatat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066858 7 +  72422247 -TAGAtat
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509331 7 + 134985053 -tatatat
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967098 7 + 137757926 -tatatat
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709108 7 + 132286798 -TATATAT
i papAnu2.chr11                C 0 C 0
s otoGar3.GL873576               6763964 8 +  12054995 TCATTCAG
i otoGar3.GL873576             N 0 I 35
e gorGor3.chr10                 93746356 4433 - 147764049 I
e chlSab2.chr11                 27002270 92 + 128539186 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=32935.000000
s hg38.chr14_KI270725v1_random     54594 27 +    172810 agcttgcttctttttccactatgataa
s panTro4.chrUn_GL393527          132635 27 +    341619 agcttgcttctttttccatgatgataa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066865 27 +  72422247 agcttgcttctttttccatcgtgataa
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509338 27 + 134985053 agcttgctttttttcccatcatgataa
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967105 27 + 137757926 agcttgctttttttcccatcatgataa
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709115 27 + 132286798 AGCTTGCtttttttCCCATCATGATAA
i papAnu2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6763972 35 +  12054995 I
e chlSab2.chr11                 27002270 92 + 128539186 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=2548.000000
s hg38.chr14_KI270725v1_random     54621 1 +    172810 t
s panTro4.chrUn_GL393527          132662 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066892 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509365 1 + 134985053 t
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967132 1 + 137757926 t
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709142 1 + 132286798 T
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002362 1 + 128539186 t
i chlSab2.chr11                I 92 C 0
s otoGar3.GL873576               6764007 1 +  12054995 t
i otoGar3.GL873576             I 35 I 49
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=81696.000000
s hg38.chr14_KI270725v1_random     54622 49 +    172810 tttcccatgtcatgaattacggcttgcaagtgcttattcttaacaggct
s panTro4.chrUn_GL393527          132663 49 +    341619 tttcccatgtcatgaattacggcttacaagtgcttattcttaaagggct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066893 48 +  72422247 tttcccatgtcatgaattacagcttgcaagtgc-tattcttaaggggct
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509366 48 + 134985053 tctcccatgtcatgaattatggcttgcaagtgc-tattcttaaagggct
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967133 48 + 137757926 tttcccatgtcatgaattatggcttgcaagtgc-tattcttaaagggct
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709143 48 + 132286798 TTTCCCATGTCATGAATTATGACTTGCAAGTGC-TATTCTCAAAGGGCT
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002363 48 + 128539186 tttctcatgtcgtgaattatggcttgcaagtgc-tattcttaaagggct
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764008 49 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=1883.000000
s hg38.chr14_KI270725v1_random     54671 1 +    172810 g
s panTro4.chrUn_GL393527          132712 1 +    341619 g
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066941 1 +  72422247 g
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509414 1 + 134985053 g
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967181 1 + 137757926 g
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709191 1 + 132286798 a
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002411 1 + 128539186 g
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6764057 1 +  12054995 g
i otoGar3.GL873576             I 49 I 3
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=4011.000000
s hg38.chr14_KI270725v1_random     54672 2 +    172810 ca
s panTro4.chrUn_GL393527          132713 2 +    341619 ca
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066942 2 +  72422247 ca
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509415 2 + 134985053 ca
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967182 2 + 137757926 ca
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709192 2 + 132286798 ca
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002412 2 + 128539186 ca
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764058 3 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=2548.000000
s hg38.chr14_KI270725v1_random     54674 1 +    172810 t
s panTro4.chrUn_GL393527          132715 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066944 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509417 1 + 134985053 t
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967184 1 + 137757926 t
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709194 1 + 132286798 t
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002414 1 + 128539186 t
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6764061 1 +  12054995 t
i otoGar3.GL873576             I 3 I 68
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=121213.000000
s hg38.chr14_KI270725v1_random     54675 68 +    172810 tatttttcattatttggatttattgttatttaattggagctctattattgaacatttagattgcttcc
s panTro4.chrUn_GL393527          132716 68 +    341619 tatttttcattatttggatttattgttatttaattggagctctattattgaacattttgattgcttcc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2066945 68 +  72422247 tatttttcattatttggatttattgttatttaattggagctctattattgaacatttagattgcttcc
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509418 68 + 134985053 tatttttcgttatttggatttatcattatttaattggagttctattattgaacatttagattgctccc
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967185 68 + 137757926 tatttttcgttatttggatttatcattatttaattggagttctattattgaacatttagattgctccc
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709195 68 + 132286798 tatttttcagtatttggatttatcattatttaattggAGTTCTATTATTGAACATTTAGATTGCTCCC
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002415 68 + 128539186 tatttttcattatttggatttatcattatgtaattggagttctactattgaacatttagattgctccc
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764062 68 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=2548.000000
s hg38.chr14_KI270725v1_random     54743 1 +    172810 a
s panTro4.chrUn_GL393527          132784 1 +    341619 a
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067013 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509486 1 + 134985053 a
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967253 1 + 137757926 a
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709263 1 + 132286798 A
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002483 1 + 128539186 a
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6764130 1 +  12054995 a
i otoGar3.GL873576             I 68 I 22
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=35482.000000
s hg38.chr14_KI270725v1_random     54744 21 +    172810 aaattttttgctcttgttaat
s panTro4.chrUn_GL393527          132785 21 +    341619 aaattttttgctcttgttaat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067014 21 +  72422247 aaattttttgctcttattaat
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509487 21 + 134985053 aaagtttttactcttattaat
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967254 21 + 137757926 aaagtttttactcttattaat
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709264 21 + 132286798 AAAGTTTTTActcttattaat
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002484 21 + 128539186 aaagtttttgctcttattaat
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764131 22 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=2548.000000
s hg38.chr14_KI270725v1_random     54765 1 +    172810 a
s panTro4.chrUn_GL393527          132806 1 +    341619 a
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067035 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509508 1 + 134985053 a
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967275 1 + 137757926 a
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709285 1 + 132286798 a
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002505 1 + 128539186 a
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6764153 1 +  12054995 a
i otoGar3.GL873576             I 22 I 60
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=88549.000000
s hg38.chr14_KI270725v1_random     54766 56 +    172810 tattgtaataaac-ttcTGTG-AAACACATACTCTTCACCTGCTACTTACATATGACT
s panTro4.chrUn_GL393527          132807 56 +    341619 tattgtaataaac-ttcTGTG-AAACACATACTCTTCACCTGCTACTTATATATGACT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067036 58 +  72422247 tattgtaataaacTTTTTATGAAAACATATACTCTTCACCTGCTACTTACATATGACT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509509 55 + 134985053 tattataataaac-ttcTGTG-AAACACATACTCTT-GCCTGCTACTCAGATATGACT
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967276 55 + 137757926 tattataataaac-ttcTGTG-AAACACATACTCTT-GCCTGCTACTCAGATATGACT
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709286 55 + 132286798 tattataataaac-ttCTGTG-AAACACATACTCTT-GCCTGCTACTCAGATATGACT
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002506 55 + 128539186 tattataataaac-ttcTGTG-AAACACATACTCTT-GCCTGCTACTTAGATATGACT
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764154 60 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=5348.000000
s hg38.chr14_KI270725v1_random     54822 2 +    172810 TC
s panTro4.chrUn_GL393527          132863 2 +    341619 TC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067094 2 +  72422247 TC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509564 2 + 134985053 TC
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967331 2 + 137757926 TC
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709341 2 + 132286798 TC
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002561 2 + 128539186 TC
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6764214 2 +  12054995 TC
i otoGar3.GL873576             I 60 I 176
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=123167.000000
s hg38.chr14_KI270725v1_random     54824 73 +    172810 TGTAAGCCGAGACCTctgtatccccaggacct----agaaggttacctggacatagtagtttcttaattaaaaaaaa-
s panTro4.chrUn_GL393527          132865 73 +    341619 TGTAAGCAGAGACCTctgtatccccaggacct----agaaggttacctggacatagtagttgcttaattaaaaaaaa-
i panTro4.chrUn_GL393527       C 0 I 1
s ponAbe2.chrUn                  2067096 77 +  72422247 TGTAAGCAGAGACCTctgtatccccaggactctctaagaaggttacctggacatagtagttgcttaatttaaaaaaa-
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509566 74 + 134985053 TGTAAGCAGAGACCTctgtatcctcagaacct----agaaggttacctggacatagtagttgcttaattaaaaaaaaa
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967333 74 + 137757926 TGTAAGCAGAGACCTctgtatcctcagaacct----agaaggttacctggacatagtagttgcttaattaaaaaaaaa
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709343 73 + 132286798 TGTAAGCAGAGACCTCTGTATCCTCAGAACCT----AGAAGGTTACCTGGACATAGTAGttgcttaatt-aaaaaaat
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002563 73 + 128539186 TGTAAGCAGAGACCTctgtatcctcagaacct----agaaggttacctggacatagtagttgcttaatt-aaaaaaaa
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764216 176 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=50661.000000
s hg38.chr14_KI270725v1_random     54897 27 +    172810 ttattgattgaatgaaAGAAGACTATT
s panTro4.chrUn_GL393527          132939 27 +    341619 ttattgattgaatgaaAGAAGACTATT
i panTro4.chrUn_GL393527       I 1 C 0
s ponAbe2.chrUn                  2067173 27 +  72422247 ttattgattgaatgaaAGAAGACTATT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509640 27 + 134985053 ttattgattgaatgaaAGAAGACTATT
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967407 27 + 137757926 ttattgattgaatgaaAGAAGACTATT
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709416 27 + 132286798 taattgattgaATGAAAGAAGACTATT
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002636 27 + 128539186 ttattgattgaatgaaAGAAAACTATT
i chlSab2.chr11                C 0 I 242
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764216 176 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=177729.000000
s hg38.chr14_KI270725v1_random     54924 100 +    172810 AAAT-GTTCAGTTCTTctttttttattc-tgattccctgtgtatccagaggcctcttatttgtctgcatgtatgagtttggctgtaatgaaagtattggcca
s panTro4.chrUn_GL393527          132966 100 +    341619 AAAT-GTTCAGTTCTTctttttttattc-tgattccccgtgtatccaggggcctcttatttggctgcatgtatgagtttggctgtaatgaaagtattggccg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067200 102 +  72422247 AAATCGTTCAGTTCTTCTTTTTTAATTCTTGGATTCTTGTGTATCCAGGGGCCTCTTatttggctgcatgtatgagtttggctataatgaaagtattggcca
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509667 100 + 134985053 AAAT-GTTCAGATCCTCTTTTTTTATTC-TGATTCCCTGTGTATCCAGGGGCCTCTTATTTGGCTGCATATATGAGTTTGGCTGTAATGAAAGTATTGGCCA
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967434 100 + 137757926 AAAT-GTTCAGATCCTCTTTTTTTATTC-TGATTCCCTGTGTATCCAGGGGCCTCTTATTTGGCTGCATATATGAGTTTGGCTGTAATGAAAGTATTGGCCA
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709443 100 + 132286798 AAAT-GTTCAGATCCTCtttttttATTC-TGATTCCCTGTGTATCCAGGGGCCTCTTATTTGGCTGCATATATGAGTTTGGCTGTAATGAAAGTATTGGCCA
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27002905 100 + 128539186 aaaT-GTTCAGATCCTCTTTTTTTATTC-TGATTCCCTGTGTATCCAGGGGCCTCTTATTTGGCTGCATATATGAGTTTGGCTGTAATGAAAATATTGGCCA
i chlSab2.chr11                I 242 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764216 176 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=745.000000
s hg38.chr14_KI270725v1_random     55024 1 +    172810 t
s panTro4.chrUn_GL393527          133066 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067302 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509767 1 + 134985053 C
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967534 1 + 137757926 C
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709543 1 + 132286798 C
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27003005 1 + 128539186 T
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6764392 1 +  12054995 T
i otoGar3.GL873576             I 176 I 56
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=105064.000000
s hg38.chr14_KI270725v1_random     55025 57 +    172810 atatgaccataaacaggcattcctatttctgtcacagttat-----------------------------atttgtcattctgtat
s panTro4.chrUn_GL393527          133067 57 +    341619 atatgaccataaacaggcattcctatttctgtcacatttat-----------------------------atttgtcattctgtat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067303 57 +  72422247 atatgaccataaacaggcattcctatttctatcacagttat-----------------------------atttgtcattctgtat
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509768 86 + 134985053 GTATGACCATAAACAGGCATTCCTATTTCTATCACATGTATGACCGTAAACAGGCAATCCTATTTCTATCatttgtcattctgtat
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967535 86 + 137757926 GTATGACCATAAACAGGCATTCCTATTTCTATCACATGTATGACCGTAAACAGGCAATCCTATTTCTATCATTTGTCATTCTGTAT
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709544 86 + 132286798 GTATGACCATAAACAGGCATTCCTATTTCTATCACAGGTATGACCGTAAACAGGCAATCCTATTTCTATCATTTGTCATTCTGTAT
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27003006 86 + 128539186 ATATGACCATAAACAGGCATTCCTATTTCTATCACATGTATGACCGTAAACAGGCATTCCTATTTCTATCATTTGTCATTCTGTAT
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764393 56 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=7644.000000
s hg38.chr14_KI270725v1_random     55082 3 +    172810 taa
s panTro4.chrUn_GL393527          133124 3 +    341619 taa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067360 3 +  72422247 taa
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509854 3 + 134985053 taa
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967621 3 + 137757926 TAA
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709630 3 + 132286798 TAA
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27003092 3 + 128539186 TAA
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6764449 3 +  12054995 TAA
i otoGar3.GL873576             I 56 I 296
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=562626.000000
s hg38.chr14_KI270725v1_random     55085 327 +    172810 tacatctata-ccctgatttctattgaagcatgg-ttatttttgtttgcttctaagcaatgtagctaccctactgatgccgataaaaataaattt-ctgaacctataagact-gaggattgggcctaggttgtggtaaattggcaagataatggatactaccctgtcaagagccctctgaagagaaaagtctgccac-ccttcaccaggtagaaactccTGGCAGTGCCACATTTTCCAGTTTGACGCCCTGTGATACCCTGAAAACACAGATGTTTGACTCTTTTCAAATAATATTTTAACATA-TTTTAAGATGCAAAGGCATTGTGTCAG
s panTro4.chrUn_GL393527          133127 327 +    341619 tacatctata-tcctgatttctattgaagcatag-ttatttttgttttcttctaagcaatgtagctaccatattgatgatgataaaaataaattt-ctgaacctataagacc-gaggattgggcctaggttgtggtaaattggcaagataatggatgctaccctgtcaagagccctctgaagagaaaagtctgccac-ccttcaccaggtagaaactccTGGCAGTGCCACATTTTCCAGTTTGATGCCCTGTGATATCCTGAAAAGACAGATGTTTGACTCTTTTCAAATAATATTTTAACATA-TTTTAAGATGCAAAGGCATTGTGTCAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067363 333 +  72422247 tacatatatatccctgatttctgttgaagcgtggtttaattttgtttgcttctaagcaatgtagctaccctattgatgctgataaaaataaatttcctgaacctataagacctgaggattgggcctaggttgtggtaaattggtaagataatggatgctaccctgtcaacagccctctgaagagaaaagtctgccacactttcaccaggtagaaactccTGACAGTGCCAGATTTTCCAATTTGACGCCCTGTGATACCCTGAAAAGACAGATGTTTGACTCTTTTCAAATAATATTTTAACATATTTTTAAGACGCAAAGGCATTGTGTCAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27509857 326 + 134985053 tgcatctata-tcctgatttctattgaagcatgg-ttaattttgtttgcttctatgcaatgcagctaccctattgatgctgataaaaataaattt-ctgaacctgtacgact-gaggattaggcctcggttgtggtagattggcaagataatgaatgctgccctgtcgagagccctctgaagagaacagtctgccac-ccttcaccaggtagaaa-tcctggcagtgccacgttttCCAGTTTGACTACCTATGATGCCCTGAAAAGACAGATGTTTGACTCTTTTCAAATAGTATTTTGACATA-TTTTAAGATGTAAAGGCATTGTGTCAG
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967624 326 + 137757926 TGCATCTATA-TCCTGATTTCTATTGAAGCATGG-TTAATTTTGTTTGCTTCTAAGCAATGCAGCTACCCTATTGATGCTGATAAAAATAAATTT-CTGAACCTGTACGACT-GAGGATTAGGCCTCGGTTGTGGTAGATTGGCAAGATAATGAATGCTGCCCTGTCGAGAGCCCTCTGAAGAGAACAGTCTGCCAC-CCTTCACCAGGTAGAAA-TCCTGGCAGTGCCACGTTTTCCAGTTTGACTACCTATGATGCCCTGAAAAGACAGATGTTTGACTCTTTTCAAATAGTATTTTGACATA-TTTTAAGATGTAAAGGCATTGTGTCAG
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709633 326 + 132286798 TGCATCTATA-TCCTGATTTCTATTGAAGCACGG-TTAATTTTGTTTGCTTCTAAGCAATGCAGCTACCCTATTGatgctgataaaaataaattt-ctgaaccTGTACGACT-GAGGATTGGGCCTCGGTTGTGGTAAATTGGCAAGGTAATGAATGCTGCCCTGTCGAGAGCCCTCTGAAGAGAAAAGTCTGCCAC-CCTTCACCAGGTAGAAA-TCCTGGCAGTGCCACGTTTTCCAGTTTGACTCCCTGTGATGCCCGGAAAAGACAGATGTTTGACTCTTTTCAAATggtattttaacata-ttttaagatgCAGAGGCATTGTGTCAG
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27003095 326 + 128539186 TGCATCTATA-TCCTGATTTCTATTGAAGCATGG-TTAATTTTGTTTGCTTCTAAGCAATGCAGCTACCCTATTGATGCTGATAAAAATAAATTT-CTGAACCTGTACGACT-GAGGATCGGGCCTAGGTTGTGGTAAATTGGCAAGATGATGAATGCTACCCTGTCGAGAGCCCTCTGAAGATAAAAGTCTGCCAC-CCTTCACCAGGTAGAAA-TCCTGGCAGTGCCACGTTTTCCAGTTTGACTCCCTGTGATACCCTGAAAAGACAGATGTTTGACTCTTTTCAAATAGTATTTTGACATA-TTTTAAGATGCAAAGGCATTGTGTCGG
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764452 296 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=4431.000000
s hg38.chr14_KI270725v1_random     55412 2 +    172810 AT
s panTro4.chrUn_GL393527          133454 2 +    341619 AC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067696 2 +  72422247 AC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27510183 2 + 134985053 AC
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27967950 2 + 137757926 AC
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709959 2 + 132286798 AC
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27003421 2 + 128539186 AC
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6764748 2 +  12054995 AC
i otoGar3.GL873576             I 296 I 2377
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=1838922.000000
s hg38.chr14_KI270725v1_random     55414 1062 +    172810 -TTTTTTCTTAAGAATGTATTTCATTACCACTCAGAAGTTAGC-TTCCAAAAGAAATAAGTGTGTGCAAAGG--CTTATGATAGTGGTGTAGAGAAGTTTTTAAAATAAATGTGCATCTTT---TATGGTAATAAAAGCACATTATGAAGAATTTTTTAGGTCCAGTTCACAGATTCCTTGTGCCTGGGGAAAACTTTATTAGAAAATTAGATCATTTCTAATTTGATTAGGGGAAGTCTAATGGGAAAACTTTTTAACTGAGCGGTCCAATTCGAAACATGAATATCTGTGCTGGAAGCTTCTATTGAACTTTACTTAAG--TCACATCTAAGACCCTCTGGCTGTCAGTCCAC---------CATTACCCTAACAGTGGTAGAAATTCTTTATATGACACCTAGATC-TTTTTTTGTTGCAC-----TTTT---------------------------------AAGCTGTGTAGGAAACACACTGCCCACATGTTCATACAACACAGAGTGATTATCCACTTAGTTCCTAAAAAGTTGTATTTGGTTATGGGGTTTGATCCCACTTTTCCAGGGTTTAGGTCAGCTACTGAAAATTAGGATATCTGGGTACCTCTTACTGGAGAATCCATTCCTGTTTTCATTTCATTCCTGGGGGCAATATTCAATCTGGTGTGGCCCTCTGTATTATAAAATATTTCCCAGATTGTG-TTTATCTG-AAATACAAAT--CCAAGAAG-AAGCATGGTGTTAATTGCCGTGT-AAAAAAGATTCC-AGAGTGAAGAGC-TTGAGACGTTCTATTCCTTCCTTCATA-GGTTCAGttgtttaacccagcatttttcaaacatattttactcctagaacctg-tttttcatcagacatatttaagaaaaaagcgttttgtagaacacatttggacaaatgATACTTTATATCATTACTTTGTTTTTTAAATTTTAGTTTGACTCAATTTTACAGTTTCAGGATTTTGTTTCTGCTTCAGGTTTTAAGCTTTTCTTTTATAAATAGTTACTTTCCTAGTCTGAAATGTATACATTGTTTCA-GTAATGAA--TTCGTTATGTAAATTT-GCCCATCATTCATCT-AAAGGGAATAAACGTTAA
s panTro4.chrUn_GL393527          133456 1042 +    341619 -TTTTTTCTTAAGAATATATTTCATTACCACTCAGAAGTTAGC-TTCCAAAAGAAATAAGTGTGTGCAAAG---TTTATGATAGTGGTGTAGAGAAGTTTTTAAAATAAATGTGCATCTTT---TATGGTAATAAAAGCACATTATGAAGAATTTTTTAGGTCCAGTTCATAGATTCCTTGTGCCTGGGGAAAACTTTATTAGAAAATTAGATAATT-------------------ATCTAATGGCAAAACGTTTTAACTGAGCAGTCCAATTCGAAACATGAATATCTGTGCTGGAAGCTTCTATTGAACTTTACTTAAG--TCACATCTAAGACCCTCTGCCTGTCAGTCCAC---------CATTACCCTAACAGTGGTAGAAATTCTTTATACGACACCTAGATC-TTTCTTTGTTGCAC-----TTTT---------------------------------AAGCTGTGTAGGAAACACACTGGCCACATGTTCATACGACACAGAGTGATTATCCACTTAGTTCCTAAAAAGTTGTATTTGGTTATGGGGTTTGATCCCACTTGTCCAGGGTTTAGGTCAGCTACTGAAGATTAGGATATCTGGGTACCTCTTACTGGAGAATCCATTCCTGTTTTCATTTCATTCCTGGGGGCAATATTCAATCTGGTGTGGCCCTCTGTATTATAAAATGTTTCCCAGATTGTG-TTTATCTG-AAATACACAT--CCAAGAAG-AAGCATGGTGTTAATTGCCGTGT-AAAAAAGATTCC-AGAGTCAAGAGC-TTGAGAAGTTCTATTCCTTCCTTCATA-GGTTCAGTTGTTTAACCCAGGATTTTTCAAACATATTTTACTCCTAGAACCTG-TTTTTCCTCAGACATATTTAAGAAAAAAGCGTTTTGTAGAACACATTTGGACAAATGATACTTTATATCATTGCTTTGTTTTTTAAATTTTAGTTTGACTCAATTTTACAGTTTCAGGATTTTGTTTCTGTTTCAGGTTTTAAGCTTTTCTTTTATAAATAGATACTTTCCTAGTCTGAAATCTATACATTGTTTCA-GTAATGAA--TTCATTATGTAAACTT-GCCCATCATTCATCT-AAAGGGAATAAACGTTAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2067698 1084 +  72422247 TTTTTTTCTTAAGAATATATTTCATTACCACTCAGAAGTTAGCTTTCCAAAAGAAATAAGTGTGTGCAAAGGGTTTTATGATAGTGGTGTAGAGAAGTTTTTAAAATAAATGTGCATCTTT---TATGGTAATAAAAGCACATTGTGAAGAATTTTTTAGGTCCAGTTCACAGATTCCTTGTGCCTGGGGAAAACTTTATTAGAAAATTAGATAATTTCTAATTTGATTAGGGGAAGTCTAATGGAAAAACTTTTTAGCTGAGCGGTCCAATTTGAAACATGAATATCTGTGCTGGAAGCTTCTATTGAACTTTACTTAGAGTTCACATCTAAGACCCTCTGCCTGTCAGTCCAC---------CATTACCCTAACAGTGGTAGAAATTCTTTATATGACACCTAGATCTTTTTTTTGTTGCAC-----TTTT---------------------------------AAGCTGTGTAGGAAACACATCACCCAAATGTTCATACAACACAGAGTGATTATCCACTTAGTTCCTAAAAAGTTGTATTTGATTATGGGGTTTGATCCCACTTGTCCAGGGTTTAGGTCAGCTACTGAAGATTAGGATATCTGGGTACCTCTTACTGGAGAATCCATTCCTGTTTTCATTTCATTCCTGGGGGCAATATTCAGTCTGGTGTGACCCTCTGTATTATAAAATGTTTCCCAGATTATGTTTTATCTGAAAATACAAATTCCCAAGAAGAAAGCATGGTGTTAGCTGCCGTGTAAAAAAAGATTCCAAGAGTCAAGAGCTTTGAGAAGTTCTATTCCTTCCTTCATAGGGTTCAGTTGTTTAACCCAGCATTTTTCAAACATATTTTACTCCTAGAACCTGTTTTTTCCTCAGACATATTTAAGAAAAAAGCGTTTTGTAGAACACATTTGGACAAATGATACTTTATATCATTGCTTTGTTTTTTAAATTTTAGTCTGACTCAATTTTACAGTTTCAGGATTTTGTTTCTGTTGCACGTTTTAAGCTTTTCTTTTATAAATAGTTACTTTCCTAGTCTGAAATCTATACATTGTTTCAGGTAATGAAATTTCATTATGTAAATTTGGCCCATCATTCATCTAAAAGGGAATAAACGTTAA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27510185 1096 + 134985053 -TTTTTTCTTAAGAATATATTT-GTTGCCACTCAGAAGTTAGC-TTCCAAAAGGGATAGGTGTGTGCAAAGG--TTTATGATAGTGGTGTAGAGAAGTTTTTAAAATAAATGTGCATCTTTTCCTATGGTGATAAAAGCACATGATGAAGAATTTTTTAGGTCCAGTTCACAGATTCCTTGTGCCTGGGGAAAACTGTAGTGGAAAGTTAGATAATTTCTAATTTGATTAGGGGAAGTCTAATGCAAAAACTTTTTGACTGAGCAATCCAATTTGAAACATGAATTTCTGTGCTGGAAGCTTCTATTGAAC-TTACTTAAG--TCACATCTAAGACCCTCTGCCAGTCAGTCCAC---------CATTACCCTAACAGTGGTAGAAATTCTGTATATTACACCTAGATC-TTTTTTTGTTGTAC----TTTTTTTTTTTTTTTTGCCCCTCAGGGAAATCATGGAAAAGCTGTGTAGGAAACACATTGCCCACATGTTCATACAACACAGAGTGAATATCCACTTAGTTCCTAAAAAGTTGTATTTGGTTATGGGGTTTGATCCCAGTTATCCAGGGTTTATGTCAGCTACTGAAGATTAGGATATCTGGGTACCTCTTACTGGAGTATCCATTCCTGTTTTCATTTCATTCCTGGGGGCAGTATTCAATCTGGTGTGG-CCTCTGTGTTATAAAATGTTTCCCAGATTGTG-TTTATCTG-AACTACAAAT--CTAAGAAG-AAGCATGGTGTTAATTGCCATGT-AAAAATGATTCC-AGAGTCAAGAGC-TTGAGAAGTTCTGTTCCTTCCTTCATA-GGTTCAGTTGTTTAACCCAGTGTTTTTCAAACATACTTTACTCCTGGAACCTG-TTTTTCCTCAGACGTATTTAAGAAAAAAGCATTTTGTAGACCACATTTGGACAAATGATACTTTATATCATTGCTTTGTTTTTTAAATTTTAGTTTGACTGAATTTTACAGTTTCAGGATTTTGTTTCTGTTGCAGGTTTTAAGCTTTTCTTTTATAAATAGTTACTTTCCTAGTCTGAAATCTATACATTGTTTCA-GTAATTAA--TTCATTACGTAAATTT-GCCAATCATTCATCT-AAAGGGAATAAATGTTAA
i rheMac3.chr11                C 0 I 17
s macFas5.chr11                 27967952 1095 + 137757926 -TTTTTTCTTAAGAATATATTT-GTTGCCACTCAGAAGTTAGC-TTCCAAAAGGAATAGGTGTGTGCAAAGG--TTTATGATAGTGGTGTAGAGAAGTTTTTAAAATAAATGTGCATCTTTTCCTATGGTGATAAAAGCACATGATGAAGAATTTTTTAGGTCCAGTTCACAGATTCCTTGTGCCTGGGGAAAACTGTAGTGGAAAGTTAGATAATTTCTAATTTGATTAGGGGAAGTCTAATGCAAAAACTTTTTGACTGAGCAATCCAATTTGAAACATGAATTTCTGTGCTGGAAGCTTCTATTGAAC-TTACTTAAG--TCACATCTAAGACCCTCTGCCAGTCAGTCCAC---------CATTACCCTAACAGTGGTAGAAATTCTGTATATTACACCTAGATC-tttttttgttgtac-----tttttttttttttttGCCCCTCAGGGAAATCATGGAAAAGCTGTGTAGGAAACACATTGCCCACATGTTCATACAACACAGAGTGAATATCCACTTAGTTCCTAAAAAGTTGTATTTGGTTATGGGGTTTGATCCCAGTTATCCAGGGTTTATGTCAGCTACTGAAGATTAGGATATCTGGGTACCTCTTACTGGAGTATCCATTCCTGTTTTCATTTCATTCCTGGGGGCAGTATTCAATCTGGTGTGG-CCTCTGTGTTATAAAATGTTTCCCAGATTGTG-TTTATCTG-AACTACAAAT--CTAAGAAG-AAGCATGGTGTTAATTGCCATGT-AAAAATGATTCC-AGAGTCAAGAGC-TTGAGAAGTTCTGTTCCTTCCTTCATA-GGTTCAGTTGTTTAACCCAGTGTTTTTCAAACATACTTTACTCCTGGAACCTG-TTTTTCCTCAGACGTATTTAAGAAAAAAGCATTTTGTAGACCACATTTGGACAAATGATACTTTATATCATTGCTTTGTTTTTTAAATTTTAGTTTGACTGAATTTTACAGTTTCAGGATTTTGTTTCTGTTGCAGGTTTTAAGCTTTTCTTTTATAAATAGTTACTTTCCTAGTCTGAAATCTATACATTGTTTCA-GTAATTAA--TTCATTACGTAAATTT-GCCAATCATTCATCT-AAAGGGAATAAATGTTAA
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26709961 1100 + 132286798 -TTTTTTCTTAAGAATATATTT-GTTGCCACTCAGAATTTAGC-TTCCAAAAGGAATAGGTGTGTGCAAAGG--TTTATGATAGTGGTGtagagaagtttttaaaataaatgtgcatcTTTTCCTATGGTGATAAAAGCACATGATGAAGAATTTTTTAGGTCCGGTTCACAGATTCCTTGTGCCTGGGGAAAACTGTAGTAGAAAGTTAGATAATTTCTAATTTGATTAGGGGAAGTCTAATGCAAAAACTTTTTGACTGAGCAATCCAATTTGAAACATGTATTTCTGTGCTGGAAGCTTCTATTGAAC-TTACTTAAG--TCACATCTAAGACCCTCTGCCAGTCAGTCCAC---------CATTACCCTAACAGTGGTAGAAATTCTTTATATTACACCtagatc-tttttttgttgtacttttttttttttttttttttgcccctcaGGGAAATCATGGAAAAGCTGTGTAGGAAACACATTGCCCACATGTTCATACAACACAGAGTGAATATCCACTTAGTTCCTAAAAAGTTGTATTTGGTTATGGGGTTTGATCCCATTTATCCAGGGTTTATGTCAGCTACTGAAGATGAGGATATCTGGGTACCTCTTACTGGAGTATCCACTCctgttttcatttcattcctGGGGGCAGTATTCAATCTGGTGTGG-CCTCTGTGTTACAAAATGTTTCCCAGATTGTG-TTTATCTG-AACTACAAAT--CTAACAAG-AAGCATGGTGGTAATTGCCATGT-AAAAATGATTCC-AGAGTCAAGAGC-TTAAGAAGTTCTGTTCCTTCCTTCATA-GGTTCAGTTGTTTAACccagtgtttttcaaacataCTTTACTCCTGGAACCTG-TTTTTCCTCAGACGTAtttaagaaaaaagcattttgtaGACCACATTTGGACAAATGATACTTTATatcattgctttgttttttaaattttagtttgactgaattttacagtttcaggattttgtttctgttgcagattttaagcttttcttttataaatagttACTTTCCTAGTCTGAAATCTATACATTGTTTCA-GTAATTAA--TTCATTATGTAAATTT-GCCGATCATTCATCT-AAAGggaataaatgttaa
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27003423 1104 + 128539186 -TTTTTTCTTAAGAATATATTT-GTTGCCACTCAGAAGTTAGC-TTCCAAAAGGAATAGGTGTGTGCAAAGG--TTTATGATAGTGGTGTAGAGAAGTTTTTAAAATAAATGTGCATCTTTTCCTATGGTGATAAAAGCACATGAAGAAGAATTTTTTAGGTCCGGTTCACAGATTCCTTGTGCCTGGGGAAAACTGCAGTAGAAAGTTAGATAATTTCTAATTCGATTAGGGGAAGTCTAATGCAAAAACTTTTTGACTGAGCAATCCAATTTGAAACATGAATTTCTGTGCTGGAAGCTTCTATTGCAC-TTACTTAAG--TC-CATCTAAGACCCTCTGCCAGTCAGTCCACAGTGGTAGAAATTACCCTAACAGTGGTAGAAATTCTTTATATTACACCTAGATC-tttttttgttgtac---tttttttttttttttttGCCCCTCAGGGAAATCATGGAAAAGCTGTGTAGGAAACACATTGCCCACATGTTCATACAACACAGAGTGAATATCCACTTAGTTCCTAAAAAGTTGTATTTGGTTATGGGGTTTGATCCCAGTTATACAGGGTTTATGTCAGCTACTGAAGATTAGGATATCTGGGTACCTCTTACTGGAGTATCCATTCCTGTTTTCATTTCATTCCTGGGAGCAATATTCAATCTGATGTGG-CCTCTGTGTTATAAAATGTTTCCCAGATTGTG-TTTATCTG-AACTACAAAT--CTAAGAAG-AAGCATGGTGTTAACTGCCATGT-AAAAATGATTCC-AGAGTCAAGAGC-TTGAGAAGTTCTGTTCCTTCCTTCATA-GGTTCAGTTGTTTAACCCAGTGTTTTTCATACATGCTTTACTCCTGGAACCTG-TTTTTCCTCAGAGGTATTTAAGGAAAAAGCATTTTGTAGAACACACTTGGACAAATGATACTTTATATCATTGCTTTGTTTTTTAAATTTTAG-TTGACTCAATTTTACAGTTTCAGGATTTAATTTCTGTTGCAGGTTTTAAGCTTTTCTTTTATAAATAGTTACTTTCCTAGTCTGAAATCTATACATTGTTTCA-GTAATTAA--TTCATTACGTAAATTT-GCCGATCGTTCATCT-AAAGGGAATAAATGTTAA
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764750 2377 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=7161.000000
s hg38.chr14_KI270725v1_random     56476 11 +    172810 ATTGTTTTTTT
s panTro4.chrUn_GL393527          134498 11 +    341619 ATTGTTTTTTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2068782 11 +  72422247 ATTGTTTTTTT
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr11                 27969047  6 + 137757926 -----CTTTTT
i macFas5.chr11                C 0 I 321
s papAnu2.chr11                 26711061  6 + 132286798 -----cttttt
i papAnu2.chr11                C 0 I 3
s chlSab2.chr11                 27004527  6 + 128539186 -----CTTTTT
i chlSab2.chr11                C 0 I 3
e gorGor3.chr10                 93746356 4433 - 147764049 I
e rheMac3.chr11                 27511281 17 + 134985053 I
e otoGar3.GL873576               6764750 2377 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=117308.000000
s hg38.chr14_KI270725v1_random     56487 101 +    172810 A-AATTTTGACTTGTGTCACATATGAGAATATAAAGTATATCTGTACA--ATAAAGGAAAATGAAACATCAAAGTATCTA-CCTCAGATTAAGAAGCAGAAC-TTg
s panTro4.chrUn_GL393527          134509 102 +    341619 TTAATTTTGACTTGTGTCACATATGAGAATATAAAGTATATCTGTACA--ATAAAGGAAAATGAAACATCAAAGTATCTA-CCTCAGGTTAAGAAGCAGAAC-TTg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2068793 105 +  72422247 A-AATTTTGACTTGTGTCACATATGAGAATATAAAGTATAACTGTACATTATAAAGGAAAATGAAACATCAAAGTATCTACCCTCAGGTTAAGAAGCAGAACTTTg
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr11                 27969374 101 + 137757926 -AAAGTTTGACTTGTGTCACAGATGAGAATACGAAGTATATCTGTACA--ATAAAGGAAAATGAAACATCAAAGTATCTA-CGATAGGTTAAGAAGCAGAAC-TTg
i macFas5.chr11                I 321 C 0
s papAnu2.chr11                 26711070 101 + 132286798 -aaagtttgacTTGTGTCACAGATGAGAATATGAAGTATATCTGtaca--ataaaggaaaatgaaacatcAAAGTATCTA-CGACAGGTTAAGAAGCAGAac-ttg
i papAnu2.chr11                I 3 C 0
s chlSab2.chr11                 27004536 101 + 128539186 -AAGTTTTGACTTGTGTCACAGATGAGAATATGAAGTATATCTGTACA--ATAAAGGAAAATGAAACATCAGAGTATCTA-CGACAGGTTAAGAAGCAGAAC-TTg
i chlSab2.chr11                I 3 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e rheMac3.chr11                 27511281  17 + 134985053 I
e otoGar3.GL873576               6764750 2377 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=1463074.000000
s hg38.chr14_KI270725v1_random     56588 842 +    172810 gccgggcatgg-tggctcacccctgtaatcccagcactttgggaggcagaagtgggaagatcacttgaagccaggagttggagaccagcttgttcaataaaggaagacctcatctctaacaacaaccacaacagcaaaaaa-ttagcca-ggcacggtggcacatgcttatagtcccagctactGGtgcagcctcgaactcctggtctcaa-gctatcttcccacctcagcctcatgttgtagtgaactttgttatgcagtgtctcctattctacatgtgcaggagtatttttacagtatgtacctggagtggaattgcttggtcattgggcatgtgtgtgttcagctctattgagtggcatcataccgttctccaaagcagttgtaccaatctacaccctcaccagcagtgaatagtcttcccattgttcttcctcaatg-aaactagatattcacagccttttaggtttttc--cta------g-agtatgaag-tggtatctctttggggttttaatgtttatttccctg-attag-aattgtagttgagcatcttttattatgtttat--ggacca-tttatg-ttctctcttctgtgaaattcct--attcgggttttttgctcattttaaatgttgttgtttgtgtttttcttat-atagg-aactcttcacgcattcaagatgcACA-TATGTTGTTCAG-AATAGTACC-TGAGACATAG-AAACAACTTT-GTAAGAATAGCTATCATTATATTACCATTGTATTTAATCCTTTGTTTTTATGTGTTACAATTATCTTCTGCTAGTTTGTGGCTTATTTTTCATTCTGTGATGCTAATTTTTTAACCTAGTATTCTATTATTT
s panTro4.chrUn_GL393527          134611 842 +    341619 gccaggcatgg-tggctcacacctgtaatcccagcactttgggaggcagaagtgggaagatcacttgaagccaggagttggagaccagcttgttcaataaaggaagacctcatctctaacaacaaccacaacagcaaaaaa-ttagcca-ggcatggtggcacatgcttatagtcccagctactGGtgcagcctcgaactcctggtctcaa-gccatcttcccacctcagcctcATGTTCTAGtgaactttgttatgcagtgtctcctagtctacatgtgaaggagtatttttacagtatgtacctggagtggaattgcttggtcattgggcatgtgtgtgttcagctctattgagtggcatcaaactgttctccaaagcagttgtaccaatctacaccctcacaagcagtgaatagtcttcccattgttcttcctcaatg-aaactagatactcacagccttttaggtttttc--cta------g-agtatgaag-tggtatctctttggggttttaatgtttatttccctg-attag-aattgtagttgagcatcttttattatgtttat--gggcca-tttgtg-ttttttcttctgtgaaattcct--attcgggttttttgctcattttaaatgttgttgtttgtgtttttcttat-atagg-aattcttcacgcattcaagatgcACG-TATGTTGTTCAG-AATAGTACC-TGAGACATAG-AAACAACTTT-GTAATAATAGCTATCATTATATTACCATTGTATTTAATCCTTTGTTTTTATGTGTTACAATTATCTTCTGCTAGTTTGTGGCTTATTTTTCATTCTGTGATGCTAATTTTTTAACATAGTATTCTATTATTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2068898 866 +  72422247 gccgggaatggttggctcacacctgtaatcacagcactttgggaggcagaagtgggaagatcacttgaagccaggagttggagaccagcttgttcaataaaggaagacctcatctctaacaacaaccacaacaacaaaaaanttagccanggcacggtggcacatgcttatagtcccagctactGGtgcagccttgaactcctggtctcaaggccatcttcccacctcagcctcATGTTCTAGtgaactttgttatgaagtgtctcctattctacatgtgcaggagtatttttacagtatgtacctggagtggaattgctcggtcattgggcatgtgtgtgttcagctctattgagtggcatcaaactgttctccaaagcagttgtaccaatctataccctcatcagcagtgaatagtcttcccattgttcttcctcaatgaaaactagatattcacagccttttagggtttttggcta------gaagtatgaagttggtatctctttggggttttaatgtttatttccctgcattagaaattgtagttgagcatcttttattatgtttataggggccattttatgtttttctcttctgtgaaattccctatttcgggttttttgctcattttaaatgttgttatttgtgtttttcttatAATAGGAAATTCTTCATGCATTTAAGATGCACGTTATATTGTTCAGAAATAGTACCTTGAGACATAGAAAACAACTTTGGTAAGAATAGCTATCATTGTATTACCATTGTATTTAATCCTTTGTTTTTATGTGTTACAATTATCTTCTGCTAGTTTGTGGCTTATTTTTCTTTCTGTGATGCTAATTTTTTAACCTAGTATTCTATTATTT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27511298 847 + 134985053 gccgggcgcgg-tggctaaagcctgtaatcccagcactttgggaggctgaagtgggaagatcacttgaagccaggagttggaaaccagcttggtcaataaaggaagacctcatctctaacaacaaccacaacaacaaaaaa-ttagcca-ggcacggtggcacatgcttgtagtcccagctactGGCgcagcttcaaactcccggcctcaa-gctgtcttcccaactcagcttcATGTTCCACtgaacattgttatgcagtgtctcctattctacatgtgcaggtttatttttacagtatgtacctggagtggaattgcttggtcattgggcacgtgtgtgttcagctttattgagtggcatcaaactgttctccaaagcagttataccaatctataccctcaccagcagtgaacagttttcccattgttcttccttaatg-aaattatatattcacagccttttaggtttttg--ctaaactagg-agtatgaag-tggtatttctttggggttttaatgttcattt-cctg-attag-aattgtagttgagcatcttttattgtgtttat--gagcca-tttatg-ttttctcttctgtcaaattcct--atttgggttttttgttcattttaaattttgttgtttgtgtttttcttat-atagg-aatttgacatgcattcaagatgcGTG-GATATTGTTTAG-AATAGTACC-TGAAACATAG-AAACAACTTT-GTAAGAATAGCTATCATTGTATTACCATCGTATTTAATCCTTTGTTTTTATGTGTTACAATTATCTTCTGCTAGTTTGTGGCTTATTTTTCATTCTGTGATGCTAATTTTTTAACGTGGTATTGTATTATTT
i rheMac3.chr11                I 17 C 0
s macFas5.chr11                 27969475 847 + 137757926 actgggcatgg-tggctcacgcctgtaatcccagcactttgggaggcagaagtgggaagatcacttgaagccaggagttggaaaccagcttggtcaataaaggaagacctcatctctaacaacaaccacaacaacaaaaaa-ttagcca-ggcatggtggcacatgcttgtagtcccagctactGGtgcagcttcaaactcctggcctcaa-gctgtcttcccaactcagcttcATGTTCCACtgaacattgttatgcagtgtctcctattctacatgtgcaggtttatttttacagtatgtacctggagtggaattgcttggtcattgggcacgtgtgtgttcagctttattgagtggcatcaaactgttctccaaagcagttataccaatctataccctcaccagcagtgaatagttttcccattgttcttccttaatg-aaattagatattcacagccttttaggtttttg--ctaaactagg-agtatgaag-tggtatttctttggggttttaatgttcattt-cctg-attag-aattgtagttgagcatcttttattgtgtttat--gagcca-tttatg-ttttctcttctgtcaaattcct--atttgggttttttgttcattttaaattttgttgtttgtgtttttcttat-atagg-aattcttcttgcattcaagatgcGTG-GATATTGTTTAG-AATAGTACC-TGAAACATAG-AAACAACTTT-GTAAGAATAGCTATCATTGTATTACCATCGTATTTAATCCTTTGTTTTTATGTGTTACAATTATCTTCTGCTAGTTTGTGGCTTATTTTTCATTCTGTGATGCTAATTTTTTAACGTGGTATTGTATTATTT
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26711171 847 + 132286798 actgggcatgg-tggctcacgcctgtaatcccagcactttgggaggcagaagtgggaagatcacttgaagccaggagttggtgACCAGCTTGGTCAATAAaggaagacctcatctctaacaacaaccacaacaacaaaaaa-ttagcca-ggcacggtggcacatgcttgtagtcccagctactggtgcagcttcaaactcctggcctcaa-gctgtcttcccaactcagcctcatGTTCCACTGAACGTTGTTATGCAGTGTCTCCTATtctacatgtgcaggtttatttttACAGTATGTACCTGGAGTGGAATTGCTTGGTCATTGGGCATGTGTGTGTTCAGCTTTATTGAGTGGCatcaaactgttctccaaagcAGTTATACCAATCTATACCCTCACCAGCAGTGAATAGTTTTCCCATTGTTCTTCCTTAATG-AAATTAGATATTCACAGCCTTTTAGGTTTTTG--CTAAACTAGG-AGTATGAAG-TGGTATTTCTTTGGGGTTTTAATGTTCATTT-CCTG-ATTAG-AATTGTAGTTGAGCATCTTTTATTGTGTTTAT--GAGcca-tttatg-ttttctcttttgtcaaattcct--atttgggttttttgttcattttaaattttgttgtttgtgtttttcttat-ataGG-AATTCTTCATGCATTCAAGATGCGTG-TATATTGTTTAG-AATAGTACC-TGAAACATAG-AAACAACTTT-GTAAGAATAGCTATCATTGTATTACCATTGTATTTAATCCTTTGTTTTTATGTGTTACAATTATCTTCTGCTAGTTTGTGGcttatttttcattctgtgaTGCAAATTTTTTAACCTGGTattgtattattt
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27004637 840 + 128539186 actgggcatgg-tggctcatgcttgtaatcacagcactttgggaggcagaagtgggaagatcacttgaagccaggagttggagaccagcttggtcaataaaggaagacgtcatctctaacaacaactacaacaacaaaaaa-ttagcca-ggcacggtggcacatgcttatagtcccagctactGGtacagcttcaaactcctggcctcaa-gctgtcttcccaactcagcctcATGTTCCACtgaacattgttatgcagtgtctcctattctacatgtgcaggtttatttttacagtatgtacctggagtggaattgcttggtcattgggcatgtgtgtgttcagctttattgagtggcatcaaactgttctccaaagcagttataccaatctataccctcaccagcagtgaatagtcttcccattgttcttccttaatg-aaattagatattcacagccttttaggtttttg--cta------g-agtttgaag-tggtatttctttggggttttaatgttcattt-cctg-attag-aattgtagttgagcatcttttattatgtttat--gagcca-tttatg-ttttctcttctgtgaaattcct--atttgggttttttgttcattttaaattttgttgtttgtggttttcttat-atagg-aattcttcatgcattcaagatgcGTG-TATATTGTTCAG-AATAGTACC-TGAAACATAG-AAACAACTTT-GTAAGAATAGCTATCATTGTATTACCATTGTATTTAATCCTTTGTTTTTATGTCTTACAATTATCTTCTGCTAGTTTGTGGCTTATTTTTCATTCTGTGATGCTAATTTTTTAACCTGGTATTGT-TTATTT
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e otoGar3.GL873576               6764750 2377 +  12054995 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=5645.000000
s hg38.chr14_KI270725v1_random     57430 5 +    172810 -TTAAA
s panTro4.chrUn_GL393527          135453 5 +    341619 -TAAAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2069764 5 +  72422247 -CAAAA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr11                 27512145 5 + 134985053 -CAAAA
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27970322 5 + 137757926 -CAAAA
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26712018 5 + 132286798 -caaaa
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27005477 5 + 128539186 -CAAAA
i chlSab2.chr11                C 0 C 0
s otoGar3.GL873576               6767127 5 +  12054995 TTAAA-
i otoGar3.GL873576             I 2377 N 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=615894.000000
s hg38.chr14_KI270725v1_random     57435 373 +    172810 ATACACAATCTTGAGTAGTCTACATGTTCATAACCATGACATATTCATGTTGCATATGTTCTGTGTCATAACCCAGAACtttc------------tttttttttttttttttgagatggagttttgcttttgtcacccagtctgcag---caatggcgtgatcttggctaactgcaaactctacctcctgggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtatttttagtaatgacgttgtttcgccatgttggccaggctgttctcgaaatcctgacctcaggttatccgcccaccttggcctcccaaaa-tgttgagattacaggcatgagcagctgc
s panTro4.chrUn_GL393527          135458 372 +    341619 ACACACAATCTTGAGTAGTCTACATGTTCATAACCATGACATATTCATGTTGCATATGTTCTGTGTCATAACCCAGAACtttc------------tcctttttgttttttttgagatggagttttgctttcgtcacccaggctgcag-tgcaatggcgtgatcttggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcacttgccaccatgcccagctaatttttgtatttttagtaatgacgtt---tcaccatgttggccaggctggtctcgaaacactgacctcaggttatctgcccaccttggcctcccaaag-ttttgagattacaggcatgagcagctgc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2069769 379 +  72422247 ATACAAAATCTTGAGTAGTCTACATGTTCATAACCATGACATATTCATGTTGCATATGTTCTGTGTTATAACCCAGAACtttc---------ttttttttttttttttttttgagatggagttttgcttttgtcacccaggctgcagctgcaatggcgtgatcttggctcactgcaacctctgcctcctgggttcaagtgattctccttcctcagcctcctgagtagctgggattacaggcacccaccaccatgcccagctaatttttgtatttttagtaatgacgttgttttgccatgttggccaggctggtctcgaaatcctgacctcaggttatccgcccaccttggcctcccaaag-tgttgagattacaggcgtgagcagctgc
i ponAbe2.chrUn                C 0 I 107
s rheMac3.chr11                 27512150 379 + 134985053 ATACGCCATCTTGAATAGTCTACATGTTCATAACCATGGCATATTCATGTTGTATATGTTCTGTGTCATAACCCATAACTTTCAATC--------tttttttttttttttttgagatggagatttgattt-gtcacccgggctgcag-tgcaatggcgtgatcttgtctcactgcaacctccgcctgccaggttcaagcgattctccagcctcagcctcccaagtagctgggattgcagtcatccgccaccacgcctgactagtttttgtatttttagtagagacgatgtttcaccatgttggccagggtgatctcgaactcctgacctcaggttatccacccaccttggcctcccaaagttgctgggattacaggtgtgagcagctgc
i rheMac3.chr11                C 0 C 0
s macFas5.chr11                 27970327 387 + 137757926 ATACGCCATCTTGAATAGTCTACATGTTCATAACCATGGCATATTCATGTTGTATATGTTCTGTGTCATAACCCATAACTTTCAATCtttttttttttttttttttttttttgagatggagatttgattt-gtcacccaggctgcag-tgcaatggcgtgatcttggctcactgcaacctccaccttccgggttcaagcgattctccagcctcagcctcccaagtagctgggattgcaggcatccaccaccacgcctgactagtttttgtatttttagtagagacgatgtttcaccatgttggccaggctgatctcgaactcctgacctcaggttatccacccaccttggcctcccaaagttgctgggattacaggtgtgagcagctgc
i macFas5.chr11                C 0 C 0
s papAnu2.chr11                 26712023 380 + 132286798 atacacCATCTTGAATAATCTACATGTTCATAACCATGACATATTCATGTTGTATATGTTCTGTATCATAACCCATaactttcaatc------tttttttttttttttttttgagatggagatttgattt-gtcacctaggctgcag-tgcaatggcatgatcttgactcactgcaacctccaccttccgggttcaagcgattctcctgcctcagcctcccaagtagctggggttacaggcacccgccaccacgtccggctagtttttgtatttttagtagagacgatgtttcggcatgttggccaggctggtctcgaactcctgacctcaggttatccgcccaccttggcctcccaaag-tgttgggattacaggtgtgagcaactgc
i papAnu2.chr11                C 0 C 0
s chlSab2.chr11                 27005482 385 + 128539186 ATACGCCATCTTGAATAGTCTACATGTTCATAACCATGACATATTCATGTTGTATATGTTCTGTGTCATTACCCATAACTTTCAATC-tttttttttcttttttttttttttgagatggagatttgattt-gtcacccaggctgcag-tgcaatggcgtgatcttggctcactgcaacctccgccttccgggttcaagcgattctcctgccacagcctcccaagtagctggggttacaggcggccaccagcacgtccggctagtttttgtatttttagtagagacgatgtttcggcatgttggccaggctggtcttgaactcctgacctcaggttatccgcccaccttggcctcccaaag-tgttgggattacaggtgtgagcagctgc
i chlSab2.chr11                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=315221.000000
s hg38.chr14_KI270725v1_random     57808 199 +    172810 acatggccAACTTTCAGTCTTAAGTACCA-TTTTTTGCTGCTGTTTCTTTTTTTGAA-CCCCAGG-AAAAAATTAACTCATTTAATCCCCTATTCAAACTGCTACAATTTTATTTTCAGTGTTGTCGCCTGGTTGTAGATGCATTTGTCTCTCCAAATGC-ACTG-TGATTATTTCAAAGAC-AAAACATTTTTGGC-ATTGTGat
s panTro4.chrUn_GL393527          135830 199 +    341619 acccagccAACTTTCAGTCTTAAGTACCA-TTTTTTGCTGCTGTTTCTTTTTTTGAA-CCCCAGG-AAAAAATTAACTCATTTAATCCCCTATTCAAACTGCTACAATTTTATTTTCAGTGTTGTCGCCTGGTTGTAGATGCATTTGTCTCTCCAAATGC-ACTG-TGATTATTTCAAAGAC-AAAACATTTTTGGC-ATTGTGat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2070255 204 +  72422247 ACCCGGCCAGCTTTCAGTCTTAAGTACCA-TTTTTTGCTGCTGTTTCTTTTTTTGAACCCCCAGG-AAAAAATTAACTCATTTAATCCCCTATTCAAACTGCTACAATTTTATTTTCAGTGTTGTCGCCTGGTTGTGGATGCATTTGTCTCTCCAAATGCTACTGCTGATTATTTCGAAGACAAAAACATTTTTGGCAATTCTGat
i ponAbe2.chrUn                I 107 C 0
s rheMac3.chr11                 27512529 192 + 134985053 accaggccAACTT------TTAAGTACCA-TTTTTTGCTGCTATTTCTTTTTTTGAA-CCCCAAGAAAAAAATTAACCCATTTAATCCCCTGTTCAAACTGCTACAGTTTTATTTTCGGTGTTGTCGCCTAGTTGTAGA--TATTTATCTCTCCAAATGT-ACAG-TGATTATTTCGAAGTC-AAAACGTTTTTGGC-ATTGTGAT
i rheMac3.chr11                C 0 N 0
s macFas5.chr11                 27970714 192 + 137757926 accaggccAACTT------TTAAGTACCA-TTTTTTGCTGCTGTTTCTTTTTTTGAA-CCCCAGGAAAAAAATTAACCCATTTAATCCCCTGTTCAAACTGCTACAGTTTTATTTTCGGTGTCGTCGCCTAGTTGTAGA--TATTCATCTCTCCAAATGT-ACAG-TGATTATTTCGAAGTC-AAAACGTTTTTGGC-ATTGTGAT
i macFas5.chr11                C 0 N 0
s papAnu2.chr11                 26712403 195 + 132286798 accaGGCCAACTT------TTAAGTACCCtttttttgctgctgtttctttttttgaa-ccccaggaaaaaaattaacccaTTTAATCCCCTGTTCAAACtgctacaattttattttcagtgttgtcGCCTAGTTGTAGATGTATTTATCTCTCCAAATGT-ACTG-TGATTATTTCGAAGTC-AAAACGTTTTTGGC-ATTGTGAT
i papAnu2.chr11                C 0 N 0
s chlSab2.chr11                 27005867 194 + 128539186 accaggccAACTT------TTAAGTACCA-TTTTTTGCTGCTGTTTTTTATTTTGAA-CCCCAGGAAAAAAATTAACCCATTTAATCCCCTGTTCAAACTGCTACAATTTTTTTTTCAGTGTTGTCGCCTAGTTGTAGATGTATTTATCTCTCCAAATGT-ACTG-TGATTATTTCGAAGTC-AAAACGTTTTTGGC-ATTGTGAT
i chlSab2.chr11                C 0 N 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=3401.000000
s hg38.chr14_KI270725v1_random     58007 29 +    172810 atatatatacatatatatatatatatata
s panTro4.chrUn_GL393527          136029 25 +    341619 atacatata----tatatacacacatata
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2070459 24 +  72422247 atatatgta----tgtatata-atatata
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr10                 93746356 4433 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=285.000000
s hg38.chr14_KI270725v1_random     58036 4 +    172810 tatg
s panTro4.chrUn_GL393527          136054 4 +    341619 tatg
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93750789 4 - 147764049 tatg
i gorGor3.chr10                I 4433 I 41112
s ponAbe2.chrUn                  2070483 2 +  72422247 ta--
i ponAbe2.chrUn                C 0 C 0
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=19827.000000
s hg38.chr14_KI270725v1_random     58040 134 +    172810 tatatatatgtatatgtatgtatatatatgtatataatatatattgtataaatatttatattttatatatcatataaaaattatatataaaaattatatatatatatatataaatGCCACTTATCCCTAATATA
s panTro4.chrUn_GL393527          136058 118 +    341619 tat------------gtatgtatatatatgtatataatatatattatataaatatttatattttatatatcatataaaatttatatataaaaattatatatatatata----AATGCCACTTATCCCTAATATA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2070485 103 +  72422247 -------------------gtataaatatttatat-atttatatt---taa-----tatattttatatatcatataaaaattatatatata---tatagatatatatatataAATGCCACTTATCCCTAATATA
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr10                 93750793 41112 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=13935.000000
s hg38.chr14_KI270725v1_random      58174 34 +    172810 GGGACTCGATTAGTTT-CTGCTAGTGTGGGGACAA
s panTro4.chrUn_GL393527           136176 34 +    341619 GGGACTCGATTAGTTT-CTGCTAGTGTGGAGACAA
i panTro4.chrUn_GL393527        C 0 C 0
s ponAbe2.chrUn                   2070588 35 +  72422247 GGGACTCGATTAGTTTGCTGCTAGTGTGGAGACAA
i ponAbe2.chrUn                 C 0 I 16
s tupBel1.scaffold_77500.1-4027       441 34 -      4027 GGTGCTCGATTGGTTT-CAGCTAAAGTAGAGATAA
i tupBel1.scaffold_77500.1-4027 N 0 C 0
e gorGor3.chr10                  93750793 41112 - 147764049 I
e nomLeu3.chr7b                 114487759 44409 + 115148730 I

a score=5347.000000
s hg38.chr14_KI270725v1_random      58208 30 +    172810 GTCTTATCATGGCTAGGGGCCACGATGGTA
s panTro4.chrUn_GL393527           136210 30 +    341619 GTCATATCATGGCTAGGGGCCATGATGGTA
i panTro4.chrUn_GL393527        C 0 C 0
s tupBel1.scaffold_77500.1-4027       475 30 -      4027 ATCATATTATGGCCAATGGTCATGTTGGAA
i tupBel1.scaffold_77500.1-4027 C 0 C 0
e gorGor3.chr10                  93750793 41112 - 147764049 I
e nomLeu3.chr7b                 114487759 44409 + 115148730 I
e ponAbe2.chrUn                   2070623 16 +  72422247 I

a score=30692.000000
s hg38.chr14_KI270725v1_random      58238 81 +    172810 GGAGCAGTCAGAGGATTTCTTGCATTGTGATGAGTGCATATATGTTAAATGAGCCACTTATCAGTAGATTTGATAGCAGGA
s panTro4.chrUn_GL393527           136240 81 +    341619 GGAGCAGTCAGAGGATTTCTTGCATTGTGATGAGTGCATATAAATTAAATGAGCCACTTATCAGTAGATTTGATAGCAGGA
i panTro4.chrUn_GL393527        C 0 C 0
s ponAbe2.chrUn                   2070639 81 +  72422247 GGAGCAGTCAGAGGATTTCTTGCATTGTGATGAGTGCATATAAGTTAAATGAGCCACTTATCAGTAGATTTGATAGCAGGA
i ponAbe2.chrUn                 I 16 C 0
s tupBel1.scaffold_77500.1-4027       505 81 -      4027 TAATTAGTCATATGTATTCTTGTGTTGTGATTAGTGTTGATAGGGTGAATGATCCGCTTATTAGTAGCACGCACAGAAGGA
i tupBel1.scaffold_77500.1-4027 C 0 N 0
e gorGor3.chr10                  93750793 41112 - 147764049 I
e nomLeu3.chr7b                 114487759 44409 + 115148730 I

a score=-314.000000
s hg38.chr14_KI270725v1_random     58319 2 +    172810 T-A
s panTro4.chrUn_GL393527          136321 2 +    341619 T-A
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2070720 3 +  72422247 TAA
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr10                 93750793 41112 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=3025.000000
s hg38.chr14_KI270725v1_random     58321 4 +    172810 ACAG
s panTro4.chrUn_GL393527          136323 4 +    341619 ACAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2070723 4 +  72422247 ACAG
i ponAbe2.chrUn                C 0 C 0
s papAnu2.AHZZ01138950              1762 4 +     13741 aCAA
i papAnu2.AHZZ01138950         N 0 C 0
s chlSab2.chr1                  81224371 4 + 126035930 ACAA
i chlSab2.chr1                 N 0 C 0
e gorGor3.chr10                 93750793 41112 - 147764049 I
e nomLeu3.chr7b                114487759 44409 + 115148730 I

a score=371824.000000
s hg38.chr14_KI270725v1_random    58325 330 +    172810 TTATATCACTGATACCTAGGCAGTACATGACACTCTCTAAAGAATAGATTAATCCTCATGCTCTTCATCTTCCTCCTAATCTCTTTACCTGTGCTGCCCTCCAGCTTTCAAAGTGCTCT--GAGTCATCACTTACACAGTGTTCCTTAGCTGCCCCTTCAGTGGGCCAGTGTTTCTGTGCCCCAGTGTTCCTGAGAGTTAGAACACAGAAAACAGAGC------AGGCTCTTGCCCACATCACAGAACATCTTT--GTCTCCCTGTGGATCCCGCACATTTGTTCATTAGAGCTCAGGAA-TTGCCAGAGACT-GGCTTTTCTGGCAATGG-ACACTAGATTC
s panTro4.chrUn_GL393527         136327 330 +    341619 TTATATCACTGATGCCTAGGCAGTACATGACACTCAGTAAAGAATAGATTAATCCTCATGCTCTTCATCTTCCTCCTAATCTCTTTACTTGTGCTGCCCTCCAGCTTTCAAAGTGCTCT--GAGTCATCACTTACACAGTGTTCCTTAGCTGCCCCTTCAGTGGGCCAGTGTTTCTGTGCCCCAGTGTTCCTGAGAGTTAGAACACAGAAAACAGAGC------AGGCTCTTGCCCACATCACAGAACATCTTT--GTCTCCCTGTGGATCCCGCACATTTGTTCATTAGAGCTCAGGTA-TTGCCAGAGACT-GGCTTTTCTGGCAATGG-ACACTAGATTC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2070727 328 +  72422247 TTATATCACTGATACCTAGGCAGTACATGACACTCGGTAAAGAATAGATTAATCCTCATAATCTTCATCTTCCTCCTAATCTCTTTACCTGTGCTGCCCTCCAGCTTTCAAAGTGCTCTCAGAGTCATCACTTACACAGTGTTCCTTAGCTGCCCCTTTCAT-------------TGTGCCCCAGTGTTCCTGAGAGTTAAAACACAGAAAACAGAGCAGAGCAAGGCTCTTGCCCACATCACAGAACATCTTT--GTCTCCCTGTGGATCCCGCACGTTTGATCATTAGAGCTCAGGAATTTGCCAGAGACTCGGCTTTTCTGGCAATGGAACACTAGATTC
i ponAbe2.chrUn                C 0 I 130
s nomLeu3.chrUn_GL397743_2        27530 320 +    112108 TTTTATCATTGATACCTAGGCACTACATGACATCCAGTACAGAGCAGAATAATCCTCATGCTCTTCATCTTCCCCCTAATCTCTTTAACTGTGCCATCCTCCAGCTCTCAAAGTGCTCTCAGAGCCATCACTTACCCAGTGTTCCTTAGTTGCCCCTC-------ACAGTGTCTGTGAGCCCC-GTGCTCCTGAGTGT------ATGGCAAATGAAGC------AGGCTCTTATCCACTGCTCCAAATATCTTTTCTTCTCCCTGTGGAACCCACACATTTGTTCATTAGAGCTCAGGAA-CTGCCAGAGACT-GGCTTTCCTGGCAATGC-ACACTAGATTT
i nomLeu3.chrUn_GL397743_2     n 44409 I 1
s papAnu2.AHZZ01138950             1766 332 +     13741 TTATATCATTGATACCTAGGCAGTACATGACACTCAGTAAAGAATAGATTAATCCTcgtgttctttatttttctcttaatttctttacCTGTGCTGCCCTCCAGCTTTCAAAGTGCTCTCAGAGTCATCACTTACACAGTGTTCTTTAGTTGCCCCTTCAGTGGGCCAGTGTTTCTGTGCCCCAGTGTTCCTGAGAGTTATAACACAGAAAACAGAGC------AGGCTTTTGCCCACATTACAGAACATCTTT--GTCTCCCTGTGGATCCCACACATTTGTTCATTAGAGCTCAGGAA-TTGCCAGAGACT-GGCTTTTCTGGCAATGG-ACACTAGATTC
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81224375 332 + 126035930 TTATATCATTGATACCTAGGCAGTACATGACACTCAGTAAAGAATAGATTAATCCTCGTGTTCTTTATCTTTCTCCTAATTTCTTTACCTGTGCTGCCCTCCAGCTTTCAAAGTGCTCTCAGAGTCATCACTTACACAGTGTTCTTTAGTTGCCCCTTCAGTGGGCCAGTGTTTCTGTGCACCAGTGTTCCTGAGAGTTATAACACAGAAAACAGAGC------AGGCTCTTGCCCACATTACAGAACATCTTT--GTCTCCCTGTGGATCCCACACATTTGTTCATTAGAGCTCAGGAA-TTGCCAGAGACT-GGCTTTTCTGGCAATGG-ACGCTAGATTC
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I

a score=17989.000000
s hg38.chr14_KI270725v1_random    58655 27 +    172810 TTCAGAAGAATATTGG--TTGAAATCTTC
s panTro4.chrUn_GL393527         136657 27 +    341619 TTCAGAAGAATATTGG--TTGAAATCTCC
i panTro4.chrUn_GL393527       C 0 I 95
s nomLeu3.chrUn_GL397743_2        27851 27 +    112108 TTCAGAAGAATATTGG--TTTTGATGTCC
i nomLeu3.chrUn_GL397743_2     I 1 I 105
s papAnu2.AHZZ01138950             2098 29 +     13741 TTCAGAAGAATATTGCTTTTGAAATCTTC
i papAnu2.AHZZ01138950         C 0 I 95
s chlSab2.chr1                 81224707 29 + 126035930 TTCAGAAGAATATTGGTTTTGAAATCTTC
i chlSab2.chr1                 C 0 I 95
e gorGor3.chr10                93750793 41112 - 147764049 I
e ponAbe2.chrUn                 2071055 130 +  72422247 I

a score=573242.000000
s hg38.chr14_KI270725v1_random    58682 640 +    172810 AGTGATGGGGTCTATGAGGTAATTCAGTCAAATGAGGCAGGTGAGTTCCTTCTGGAAGGCTTCTGGGAAGTCTAAGTCCATTTTTCTGAGGGAAGAAAACCAGAA------------GAATTTATTCTTATGCCATAGAGAGACAAAGATCTACACAAAATTTGAAACAG-------------------GTTTTGAGTA----GGATCCGCTCACA-GGTTTAAATCTATAGCAGGATACGATTTTATTTTGCACATAAC-AAAATGAAAAACTGAGGCACAGAA-----TTCAAGCTTTGCAGAAAAATGTGTTGGCTCCCTAACCA--ACACTCA---CACACACACCTACTTTCCCAAATTCTTTCCTCCTGTATGAAAAAA----CTT----AAggctgggcacggtggctcatgc-ttgtaat-ccagcactttgggaggctgaggcagcaggattgtttgatccaaggagtccaagaccagcctgggcaacatgatgagaccctgtctctacaaaaagaaaa--gga-ggaaaaaattagctgag----------catgccaatactcccagctacta--gggaggctgaagtgagacgtttgcttgagcccaggaggttaaggcagcagtgagccataatccagccactacactctagcctgaatgacagagcaagact--gtctcaaaaatgaacaaagaaagaaa
s panTro4.chrUn_GL393527         136779 644 +    341619 AGTGATGGGATCTATGAGGTAATTCAGGCAGATGAGGCAGGTGAGTTCTTTCTGGAAGGCTGGTGGGAAGTCTAAGTCCATTTGTCTGAGGGAAGAAAACCAGAA------------GAATTTATTCTTATGCCATAGACAGACAAAGATCTACGCAAAGTTTGAatcag-------------------gttttgagta----ggattcactcaca-ggtttaaatctgtagcaggatacgattttattttgcacataacgaaaaagaaaaactgagGCACAGAA-----TTCAAGCTTTGCAGAAAAATGTGTTGGCTCACCAACCA--ACACACA---CACACACACCTACTTTCCCAAATTCTTTCCTCCTGTATGAAAAAA---ACTT----AAggctgggcacagtggttcatgc-ttgtaat-ccagcactttgggaggctgaggcagcaggattgcttgatccaaggaatccaagaccagcctgggcaacatgatgaggccctgtctctacaaaaagaaaa--gga-ggaaaaaattagctgag----------catgccaatagtcctagctacta--gggaggctgaggtgagaggattgcttgagcccaggagttcaaggcgtcagtgagccgtaatccagccactacactctagcctgaatgacagagcaagactctgtctcaaaaatgaacaaagaaagaaa
i panTro4.chrUn_GL393527       I 95 C 0
s ponAbe2.chrUn                 2071185 649 +  72422247 AGTGATGAAGTCTATGAGGTAATTCAGGCAGATGAGGCAGATGAGTTCTTTCTGGAAGGCTTGTGGGAAGTCTAAGTCCATTTTTCTGAGGGAAGAAAACCAGAA------------GAATTTATTCTTATGCCATAGAGAGACAAAGATCTACACAAAGTTTGAATCAG-------------------GTTTTGAGTA----GGATCAGCTCACAGGGTTTAAATCTATAGCAGGATAGGATTTTATTTTGCACATAACAAAAATGAAAAACTGAGGCACAGAA-----TTCAAGCTTTGCAGAAAAATGTGTTGGCTCCCTAACCAGCACACACA---CACACACACCTACTTTCCCAAATTCTTTCCTCCTGTATGAAAAAA---ACTT----AAggctgggcacagtggctcatgcgttgtaat-ccagcactttgggaggctgaggcagcaggattgcttgatccaaggagttcaagaccagcctgggcaacatgatgagaccctgtctctacaaaacaaaaa--ggacggaaaaaattagctgag----------catgcctatagtcccagctactaccgggaggctgaggtgagaggattgcttgagcccaggaggtcaaggcgacagtgagctgtaatccagccactacactctagcctgaatgacagagcaagact--gtctcaaaagtgaacaaagaaagaaa
i ponAbe2.chrUn                I 130 C 0
s nomLeu3.chrUn_GL397743_2        27983 632 +    112108 AGTGGTGGGGTCTACGAGTTAGTTCAGACAGAAGAGGCAGATGGGTTCTTTCTGGAAGGCTTGTGTGATGTCTGAGAACATTTTCCTGAAGGAAGGAAATTAGGGAAGGTATGATTCAAACTTCATCTTATGCCTTGGGGAAACAAAGACCAAAGCAAAATTTGACTCAG-------------------GTTGTGACTC----AG------TGATA-AACTTCTGTCTAGAGTAGAACA-GGCTTTATTTTGTAGAAGAC-AAAAATAGAACCTGAGGCACAAAGAGAGCTCTTGGATCTGTAGGTAAAATTGTTGGGTTCATGCACA--ACTCACAGGGCACTACAACCTAC----------CATTTTCTTTTGCATAGAAAAATGAACCTCAGAGAggccaggtgtgatggctcacac-ctgtaatcccagcactttgggatgccaaggc--------tggtagatc----aggttagagaccagcctggccaatatggggaaaccctgcctctactaaa---------ga-cacaaaaatcatccaggagaggtggcacatgcctgtaattccagaaactt--agaacac-ggggcaggagactcacttgaaccctgaattt-------gcagtcagctgagattgagccactgctcttcagcctagataataaagcaagaag-----taagaaagaaagaaagaatgaga
i nomLeu3.chrUn_GL397743_2     I 105 C 0
s papAnu2.AHZZ01138950             2222 644 +     13741 AGTGATGGGGTCTACGAGGTAATTCAGGCAGATGAGGCAAGTGAGTTCTTTCTGGAAGGCTTGTGGGAAGTCTAAGTCCATTTTTCTGAgggaagaaaaccaaaa------------gaatttaTTATTATGCTGTAGAGAGACAAAGATCTAAGCAAAGTTTGAATCAG-------------------ATTTTGATTACTACTGATCAGCTCACA-GGTTTAAATCTAGAGCAGGATAGGATTTTATTTTGcacataacaaaaatgaaaaactgaggcacaaaaaaa--TTCAAGCCCTGCAGAAAAATGTGTTGGTTCCCTAACCA--ACACGCA---CAT----ACCTACTTTCCCAAATTCTTTCCTCCTGTATGAAAAAA----CTT----AAGACtggacacagtagctcatgc-ttgtaat-tcagcactttgggagactgaggcagcaggattgcttgacccaaggagttcaagaccaggctgggcaacatgatgagaccctgtctctacaaaaaaaaaaaaaaa-aaaaaaaaatagctaag----------caTGCCTATAgt----gccacta--gggaggctgaggtgggaggatcgcttgagcccaggaggtcaagatggcagtgagccatgatccagccactacactctagcctgagtgacagagcaagactctgtctcaaaaatgaggaaagaaggaag
i papAnu2.AHZZ01138950         I 95 C 0
s chlSab2.chr1                 81224831 651 + 126035930 AGTGATGGGGTGTACGAGGTAATTCAGGCAGATAAGGCAAGTGAGTTCTTTCTGGAAGGCTTGTGGGAAGTCTAAGTCCATTTTTCTGAGGGAAGAAAACCAGAA------------GAATTTATTATTATGCTGTAGAGAGACAAAGATCTAAGCAAAGTTTGAATCAGATTTTGATTCAAAATCAAAATTTTGATTACTACTGATAAGCTTACA-GGTTTAAATCTAGAGCAGGATAGGATTTTATTTTGCACATAACAAAAATGAAAAACTGCGGCACAAAAAAA--TTCAAGCTTTGCAGAAAAATGTGTTGGTTCCCTAACCA--ACACACA---CAT----ACCTACTTTCCTGAATTCTTTCCTCCTATATGAAAAAA----CTT----AAgactggacacagtagctcatgc-ttgtaat-tcagcactttggtaggctgaggcagcaggattgcttgacccaaggagttcaagaccaggctgggcaacacgatgagaccctgtctctac------------aaa-aaaaaaaaatagctaag----------catgcctatagt----gtcacta--gggaggctgaggtgggaggatcgcttgagcccaggaggtcaagatggcagtgagccatgatccagccactacactctagcctgagtgacagagcaagactctgtctcaaaaaaGAGgaaagaaagaaa
i chlSab2.chr1                 I 95 I 1045
e gorGor3.chr10                93750793 41112 - 147764049 I

a score=21466.000000
s hg38.chr14_KI270725v1_random    59322 50 +    172810 agaaaGAGAGAGAgagggagggagggaaggaggaaggaa-ggaaggaagga
s panTro4.chrUn_GL393527         137423 45 +    341619 -----GAGAGAGAgagggagtgaaggagggagggaagaa-ggaaggaagga
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2071834 45 +  72422247 ------agaaaGAGAGAGAGAgagggaaggagggaagaatggaaggaagga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        28615 49 +    112108 -aaacgagagagagagagagagaaggaaagagagagaaa-aaagataagaa
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s papAnu2.AHZZ01138950             2866 50 +     13741 gaaggaaggaaggaaggaagggagggagggagggagggagggaaagaaag-
i papAnu2.AHZZ01138950         C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e chlSab2.chr1                 81225482 1045 + 126035930 I

a score=8736.000000
s hg38.chr14_KI270725v1_random    59372 8 +    172810 aggaagga
s panTro4.chrUn_GL393527         137468 8 +    341619 aggaagga
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2071879 8 +  72422247 aggaagga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        28664 8 +    112108 agaaagaa
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s papAnu2.AHZZ01138950             2916 8 +     13741 agaaagaa
i papAnu2.AHZZ01138950         C 0 I 278
s chlSab2.chr1                 81226527 8 + 126035930 agggagga
i chlSab2.chr1                 I 1045 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I

a score=24490.000000
s hg38.chr14_KI270725v1_random    59380 35 +    172810 a-ggaaggaag--gaaggaagaaaaggaaggaaggaag
s panTro4.chrUn_GL393527         137476 31 +    341619 a-ggaagggag--gaaggaaga----gaaggaaggaag
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2071887 33 +  72422247 acggaaggaag-agaaagaaag----gaaggaaggaag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        28672 36 +    112108 a-gaaagaaaaaagaaggaaagaaa-gaagaaagaaag
i nomLeu3.chrUn_GL397743_2     C 0 I 2334
s papAnu2.AHZZ01138950             3202 34 +     13741 a-ggaaagaaa--gaaggaaggaag-gaaagaaggaag
i papAnu2.AHZZ01138950         I 278 C 0
s chlSab2.chr1                 81226535 34 + 126035930 a-agaaagaag--gaaggaaggaag-gaaagaaggaag
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I

a score=1031539.000000
s hg38.chr14_KI270725v1_random    59415 1301 +    172810 TTTACAGAGTTTTTTGAGG-TGTTA-GTGTT--CCCTAAATTGTATGGTCTTCAGA-GGTTT-ACTCTCCTATAGCTTCAAGGGGTGAGTCCTGACTGGTAGGAAAATCAATCACACTCTTACTTGCCAGTGATTCATTTAGGGAAGACAGCTAACTAAGCTCTTCCATTTTGATTATTTCATTTAATTGTAACAACCATCTTATCATGACTTCTTCAAAATTACCCGGCCAGTAAGTGCTGgaggactccccag-aagcagaaaccaccatgcttccagtata-gcctacggaaccattagccaact-aaaggtgtttctcaggtatttctttataTCTTCAGCCAAAATT-AAAGAGTTAGGCTTTACTCTCCAAGATACTGCAACAGACAAAAACAAGGCACCACTGTTTTCTAATGTTGTTTTCTTGttaattcaatcaacaagtattttctggtaagtttactgttccagagactgttaacctggtgatgcaccggttaataaaacaTCCTTAAGAGAAATAAAAGTTTAAAAATAAACCAGATGATAAAATGCAGTAGTGTACACAATGCCACTTATCCGCA-------------TGTCTTCTCTCTGTCACCCATGATCCAGAAAATTTCTTTAGTATAAGCCATTGATAAAGATGCCTGAAAAATTCATGTATAGAAGACATAGTCACAAAATT-ATTTTTTTCCTTTGATATCCCTTGTTACCTCAAACAGAATTTACCACTCCAATTCGATTTCTGAATACATGGGAGTTAATAGAGTACTCCTAATCCATTTATAGGATCTACACTAAGTAAAAAAATTAAAGACATCTGAAAACTA-TTTTGTAAGTCCTTATAATCCATATCAACAATTATGGAATATATTAAGTAATAGACCAAAAATTAATCATCATATTAACCAAAAACACATAGCAAGACAAGATAACTAAATATTTTCATTTGGAAATTGGGAAATTTAGTCAATTTTAAAACTCAGCAAATGAGATCATTTCACAGAAGCAACCTAGGTTTGCTGGTAAATTAAAATTATGACATTTTGTTTTGGTTTGGGAGGGTAGTTCCTCTTCTGTAAATTGTGTACTCACATAAGAAATATATCTATGTTCTCACAGACACTTGCTGTAGAGGTAATAATATGAAGTTAGCTCAGGGATCAGGGCCTCACAGTGCAGTGCTGGTAGtttttttttttttttttttttttttttgccctgcaccttgagtaaaagtttcctgaggcctccccggaagcagaaaccactatgc-ttcctgtatagcctatggaacggtgagccaa
s panTro4.chrUn_GL393527         137507 1295 +    341619 TTTACAGAGTTTTTTGAGG-TGTTA-GTGTT--CCCTGAATTGTATGGTCTTCAGA-GGTTT-ACCCTCCTATAGCTTCAAGGGGTGAGTCCTGACTGGTAGGAAAATCAATCACACTCTTACTTGCCAGTGATTCATTTAGGGAAGACAGCTAACTAAGCTCTTCCACTTTGATTATTTCATTTAATTGTAACAACCATCTTATCATGACTTCTTCAAAATTAGCCTGCCAGTAAGTGTTGgaggactccccag-aagcagaaaccaccatgcttcctgtata-gcctacggaaccatgagccaact-aaaggtgtttctcaggtatttctttataTCTTTGGCCAAAATT-AAAGAGTTAGGCTTTATTCTCCAAGATACTGCAACAGACAAAAACAAGCCACCATTGTTTTCTAATTTTGTTTTCTTGTTAATTAAATCAACAAGTATTTTCTGGTAAGTTTATTGTTCCGGAGACTGTTAGCCTGGTGATGCACCGGTTCATAAAACATCCCTAAGAGAAATAAAAGTTTAAAAATAAACCAGATGATAAAATGCAGTAGTGTACACAATGCCACTTATCCGCA-------------TGTCTTCTGTCTGTCACCCATTTTCCAGAAAATGTCTTTAGTATAAGCCATTGATAAATATGCCTGAAAAATTTACATATAGAAGACATAGTCACAAAATT-ATTTTTT-CCTTTGATATCCCTTGTTACCTCAAACAGAATTTACCACTCCAATTCGATTTCTGAATACATGGGAGTTAATAGAATACTCCTAATCCATTTATAGGATCTACGCTAAGTAAAAAAATTAAAGACATCTGAAAACTA-TTTTGTGAGTCCTTATAATCCATATCAACAATCACGGAATATATTAAGTAATAGACCAAAAATTAATCATCATATTAACCAAAAACACATAGCAAGACAAGATAACTAAATATTTTCATTTGGAAATTGGGAAATTTAGTCAATTTTAAAACTCAGCAAATGAAATCATTTCACAGAAGCAACCTAGGTTTGCTGGTAAATTAAAATTATAACATTTTGTTTTGGTTTGGGAGGGTAGTTCCTCTTCTGTAAATTGTGTACTCACATAAGAAATATATCTATGTTCTCACAGACATTTGCCGTAGAGGTAATA---TGAAGTTAGCTCAGGGATCAGGGCCTCACAGTGCAGTGCTGGTAGCtttttttttttttttttttttttt--gccctgcaccttgagtaaaagtttcctgaggcctccccggaagcagaaaccaccatgc-ttcctgcatagcctatggaaccgtgagccaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2071920 1286 +  72422247 TTTACAGAGTTTTTTGAGGTTGTTACGTGTTTGCCCTAAATTGTATGATCTTCAGAGGGTTC-ACCCTCCTATAGCTTCAAGGTGTGAGTCCTGACTGGTAGGAAAATCAATCACACTCTTACTTGCCAGTGATTCAGTTA-GGAAGACAGCTAACTAAGCTCTTCCACTTTGATTATTTCATTTAATTGTAACAACCATCTTTTCATGACTTCTTCAAAATTACTCTGCCAGTAAGTGTTGgaggcctccccagtaagcagaaacctccatgcttcctgtatatgcctacggaaccatgagccaactaaaaggtgtttctcaggtatttctttataTCTTTGGCCAAAATTAAAAGAGTTAGGCTTTACTCTTCAAGATACCGCAACAGACAAAAACAAGCCACCACTGTTTTCTAATGTTGTTTTCTTGttaattcaatcaacaagtattttctggtaagtttagtgttccagagactgttaacctggtgatgcactggttaataaaacaTCCTTAAGAGAAATAAAAGTTTAAAAATAAACCAGATGATAAAATGCAGTAGTGTACACAATGCTACTCATCCGCA-------------TGTCTTCTGTCTGTCACCCATGATCCAGAAAATGTCTT----------------TAAAGATGCCTGAAAAATTTACGTGTAGAAGACATAGTCACAAAATT-ATTTTTTTCCTCTGATATCCCTTGTTACCTCAAACAGAATTTACAACTCCAATTCAATTTCTGAATACATGGGAGTTAATAGAATACTCCCAATCCATTTATAGGATCTACACTAACTGAAAAAATTAAGGACATCTGAAAACTACTTCTGTGAATCCTTATAATCCATATCAACAATCATGGAATATATTAAGTAATAGACCAAAAATTAATCATCATATTAACCAAAAACACATAGCAAGACAAGATAACTAAATATTTTCATTTGGAAATTGGGAAATTTAGTCAATTTGAAAACTCAGCAAATGAGATCATTTCACAGAAGCAACCTAGGTTTGCTGGTAAATTAAAATTATGACATTTTGTTTTGGTTTGGGAGGGTAGTTCCTCTTCTGTAAATTGTGTACTCACATAAGAAATATATC--TGTTCTCACGGACGCTTGCTGTAGAGGTAATAATATGAAGTTAGCTCAGGGATCAGGGCCTCACAGTGCGGTGCTGGTAGCTTTTTTTTTTTTTTTTttt-------gccctgcaccttgagtaaaagtttcctgaggccgccccaaaagcagaaaccaccatgctttcctgtatagcctatggaaccgtgagccaa
i ponAbe2.chrUn                C 0 C 0
s papAnu2.AHZZ01138950             3236 1283 +     13741 tttaCAGAGTTTTTTAAGG-CATTG-GTGTT--CCCTAAATTGTATGGTCTTCAGA-GGTTTGACCCTCCTATAGCTTCAAGGGATGAGTCCTGACTGGTGGGAAAATCAATCACACTCTTACTTGCCAGCGATTCATTTAGGGAAGACAGCTAACTAAGCTCTTCCActttgattatttcatttaactgtAACAACCATCTTATCATGACTTCTTCAAAATCACCCTGCCAGTAAGTGttggaggcctccccag-aagcagaaaccaCCACGCTTCCTGCata-gcctacagaaccatgagcaaaCT-AAAGGTatttctcaggtatttctttatatctctGGCCAAAATT---AGAGTTAGGCTTTACTCTCCAAGATACTGCAACAGACAAAAACAAGCCACCATTGTTTTCTAACGTTGTTTTCTTGTTAATTCAATCAACAAGTATTTTCTGGAAAGTTTAGTGTTCCAGAGACTGT--------------ACTGGTTAATGAAACATccttaagagaaataaaagtttaaaaataaaccagatgATAAAATGCAGTAGTGTATGCAATGCCACTTATCCACATTTTAGAGTCTTCTGTCTTCTGTCTGTCA-CCATGATCCAGAAAATGTCTTCAGTATAAGCCATTGGTAAAGATGCATGAAAAATTTATGTAGAGAAGACATAgtcatgaaattattttttttcctttgaaatcccTTGTTACCTCAAACAGAATTTACCCCTGCAACTCGATTTCTGAATATGTGGGAGTTAATAGAATACTCCTAATCCATTTATAGGATCTACACTtagt-aaaaaattaaagatatctGAAAACTA-CTTTGTGAGTCCTTATAATCCATATCAACAATCATGGAATATAATAAGTAATAGACCAAAAATTAATCATCATATTAACCAAAAACACATAGCAAGACAAGGtaactaaatattttcatttggaaattgGGAAATCTAGTCAATTTTAAAACTCAGCaaatgagatcatttcacagaagcAACCTAGGTTTTCTGGTAAATTAAAATCAGgacattttgttttggtttgggagGGTAGTTCCTCTTCTGTAAATTGTGTACTCACTTAAGAAACATATATATGTTCTCACCGATGCTTGCTGTAGAGGTAATAATATGAAGTTAGCTCAGGGATCAGGGCCTCAGAGTGCGGGgctggtagc-----ttttttttttt----------gcccggCACCTTAAGTAAAActttcctgagggctccccagaagcagaaaccaCCATGC-CTCCTGTATAGCCTACGGAACCATGAGTCAA
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81226569 1285 + 126035930 CTTACAGAGTTTTTTGAGG-CGTTA-GTGTT--CCCTAAATTGTat-gtcttcaga-ggtttgaccctcctatagcttcaagggatgagtcctgactggtgggaaaatcaatcacactcttacttgccagcgattcatttaggGAAGACAGCTAACTAAGCTCTTCCACTTTGATTATTTCATTTAACTGTAACAACCATCTTATTATGACTTCTTCAAAATCACCCTGCCAGTAAGTGTTGgaggcctccccag-aagcagaaaccaccatgcttcctgcata-gcctacagaaccatgagccaact-aaaGGTATTTCTCAGGTATTTCCTTATATCTCTGGCCAAAATC---AGAGTTAGGCTTTACTCTCCAAGATACTGCAACAGACAAAAACAAGCCACCATTGTTTTCTAACGTTGTTTTCTTGTTAATTCAATCAACAAGTATTTTCTGGTAAGTTTAGTGTTCCAGAGACTGT--------------ACTGGTTAATGAAACATCCTTAAGAGAAATAAAAGTTTAAAAATAAACCAGATGATAAAATGCAGTAGTGTACGCAATGCCACTTATCCACATTTTAGAGTCTTCTGTCTTCTGTCTGTCA-CCATGATCCAGAAAATGTCTTCAGTATAAGCCATTGGTAAAGATGCATGAAAAATGTATGTAGAGAAGATATAGTCATACAATT-TTTTTTTTCCTTTGAAATCCCTTGTTACCTCAAACAGAATTTACCACTGCAACTCGATTTCTGAATACGTGGGAGTTAATAGAATACTCCTAATCCATTTATAGGATCTACACTTAGT-AAAAAATTAAAAATATCTGAAAACTA-CTTTGTGAGTCCTTATAATCCATATCAATAATCATGGATTATATTAAGTAATAGACC-AAAATTAATCATCATATTAACCAAAAACACATAGCAAGAAAAGATAACTAAATATTTTCATTTGGAAATTGGGAAATCTAGTCAATTTTAAAACTCAGCAAATGAGATCATTTCACAGAAGTAACCTAGGTTTTCTGGTAAATTAAAATCAGGACATTTTGTTTTGGTTTGGGAGGGTAGTTCCTCTTCTGTAAATTGTGTACTCGCTTAAGAAACATATATATGCTCTCACCGACGCTTGCTGTAGAGGTAATAATATGAAGTTAGCTCAGGGATCAGGGCCTCAGAGTGCAGGGCTGGTAGCTTTTTTTTTTTTTttt----------gcccggcaccttgagtaaaactttcctgagggctccccagaagcagaaaccaccatgc-tttctgtatagcctacggaaccatgagtcaa
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=228313.000000
s hg38.chr14_KI270725v1_random    60716 182 +    172810 ctaaaggta-tttctcatgta-tttctttgtagcaatgcaagaacgtactaatacaGCTAAGCAGAGGCTATCAGGACCAGCAACAGTCTGAGCTGGATGAGAGACAAAGCTAAACTTAGAGCAGCAGCAGGAGCTGCCAGGGAGACAGAAAGGAAGGACAGACTCCTAAATTCC-AGGATGTCT
s panTro4.chrUn_GL393527         138802 182 +    341619 ctaaaggta-tttctcatgta-tttctttatagcaatgcaagaacgtactaatacTGCTAAGCAGAGGCCATCAGGACCAGCAACAGTCTGAGCTGGATGAGAGACAAATCTAAACTTTGAGCAGCAGCAGGAGCTGCCAGGGAGACAGAAAGGAAGGATGGACTCCCAAATTCC-AGGATGTCT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2073206 185 +  72422247 ctaaaggtattttctcatgtagtttctttatagcaacgcaagaacgtgctaatacaGCTAAGCAGAGGCCATCAGGACCAGCAACAGTCTGAGCTGGATGAGAGACAAAGCTAAACTTTGAGCAGCAGCAGGAGCTGCCAGGGAGACGGAAAGGAAGGACGGGCTCCTAAATTCCAAGGATGTCT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90057111 182 + 135538710 ctAAAGGTA-TTtctcaggta-tttctttatagcaatgcaagaacatactcatacaGCTAGGCAGAGGCCATCAGGACCAGCAACAGTCTGAGCTGGGTGAGAGATAAAGCTAAACTTTGAGCTGCAGCAGGAGCTGCCAGGGAGACAGAAAGGAAGGAAGGAGCCCTACATTCC-AGGATGTCT
i rheMac3.chr14                N 0 C 0
s papAnu2.AHZZ01138950             4519 182 +     13741 CTAAAGGTa-tttctcaggta-tttctttatagcaatgcaagaacataCTAATACAGCTAGGCAGAGGCCATCAGGACCAGCAACAGTCTGAGCTGGGTGAGAGATAAAGCTAAACTTTGAGCTGCAGCAGGAGCTGCCagggagacagaaaggaaggaaggagccctAAATTCC-AGGATGTCT
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81227854 182 + 126035930 ctaaaggta-tttctcaggta-tttctttatagcaatgcaagaacatactaacacaGCTAGGCAGAGGCCATCAGGACCAGCAGCAGTCTGAGCTGGGTGAGAGATAAAGCTAAACTTTGAGCAGCAGCAGGAGCTGCCAGGGAGACAGAAAGGAAGGAAGGAGCCCTAAATTCC-AGGATGTCT
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=1140977.000000
s hg38.chr14_KI270725v1_random    60898 661 +    172810 C-CTTTAAGTCTGTAAGAAGCTCAGCCACCGTCTCCTTACCTGACTCCTCTGGGAAAGAGTTTCCCTAGGTTAAGCCATACAGGGA-TAGGGTAGGAGA-TGCCATTTGGATCTAGGAGCAGAGGGCAGAGACTCAGCAGGAAGAGTGTCTCTTTGAGAAGGAGACACAGTGGAGTAGGTGTGTAGGTTCACAGGGCCAGCTATGGGTAGAGTCGGGTGTACA-TTTTTAGAAGCCACAATTCCCC---AAAATCTCCTGACTATAACATCAGTGCACAGAGCCAGTGAAA--TGGAGGAGGAGTGGGTTCAGGCAATTCAGGAAGAAGGAAAGTAACAAATGAGTGGTTGCAGGAGGACACTTTTTCTGTCGAGGTCACTAAACAAAACATTGTCTCCTCCCCTTAACTTCGGAAACAAGCAATGGAGGGTAAAAGTGTTGCCTGGGCCCTGGGGGCAAAGGCAGTAGATAACTTCTCTGTCGCGTTCTCCAG-AAGGGCCC-A-TTCCAG-CCTCACAGGCTGA--GAAGTCTGTTCGGTTCCCAAGTA-CTAGA-GATGCTGCTATAAGGG-ACTCCCGAATTT-CCTTCCTGAACC--AGAGGCTGCCCAGCCTTTTCTTCCTGTTTTATTTTTT-CCCAGGAA--GATACTTGCCTGTACAATTACAA-GGTTCTACGGtt
s panTro4.chrUn_GL393527         138984 661 +    341619 C-CTTTAAGTCTGTAAGAAGCTCAGCCACCGTCTCCTTACCTGACTCCTCTGGGAAAGAGTTTCCCTAGGTTAATCCATACAGGGA-TAGGGTAGGAGA-TGCCATTTGGATCTAGGAGCAGAGGGCAGAGACTCAGCAGGAAAAGTGTCTCTATGAGAAGGAGACACAGTGGAACAGGTGTGTAGGTTCACAGGGCCAGCTATGGGTAGAGTCGGGTGTACA-TTTTTAGAAGCCACAATTCCCA---AAAATCTCCTGACTATAACATCAGTGCACAGAGCCAGTCAAA--TGGAGGAGGAGTGGGTCCAGGCAATTCAGGAAGAAGGAAAGTAACAAATGAGTGGTTGCAGAAGGACACCTTTTCTGTCGAGGTCACTAAACAAAACATTGTCTCCTCCCCTTAACTTCGGAAACAAGCAATGGAGGGTAAAAGTGTTGCCTGGGCCCTGGGGGCAAAGGCAGTAGATAACTTCTCTGTCATGTTCTCCAG-AAGGGCCC-A-TTCCAG-CCTCACAGGCCGA--GAAGTCTGTTCGGTTCCCAAGTA-CTAGA-GATGCTGCTATAAGGG-ACTCCCGAATTT-CCTTCCGGAACC--AGAGGCTGCCCAGTCTTTTCTTCCTGTTTTATTTTTT-CCCAGGAA--GAAACTTGCCGGTACAATTACAA-GGTTCTATGGtt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2073391 685 +  72422247 CTCTTTAAATCTGTAAGAAGCTCAGCCACCGTCTCCTTACCTGACTCCTCTGGGAAAGAGTTTCCCTAGGTTAAGCCATACAGGGATTAGGGTAGGAGATTGCCATTTGGATCTAGGAGCAGAGGGCAGAGACTCAGCAGGAAGAGTGTCTCTATGAGACGGAGACACAGTGGAGCAGGTGTGTAGGTTCACAGGGCCAGCTATGGGTAGAGTCGGGTGTACATTTTTTAGAAGCCACAATTCCCCTAAAAAATCTCCTGACTATAACATCAGTGCACAGAGCCAGTCAAATTTGGAGGAGGAGTGGGTCCAGGCAATTCAGGAAGAAGGAAAATAACAAATGAGTGGTTGCAGGAGGACAATTTTTCTGTCGAGGTCACTAGACAAAACATTGTCTCCTCCCCTTAACTTCGGAAACAAGCAATGGAGGGTAAAAGTGTTGCCTGGGCCCTGGGGGCAAAGGCAGTAGATAACTTCTCTGTCGTGTTCTCCAGAAAGGGCCC-AGGGCCAGCCCTCACAGGCCAAAGAAAGTCTGTTCGGTTCCCAAGTAGCTAGAGGATGCTGCTATAAGGGTACTCCCGAATTTCCCTTCCTGAACCCAGAAGGCTGCCCAGCCTTTTCTTCCTGTTTCATTTTTTCCCCAGGAAAGGAAACTTGCCTGTACaattacaagggttctacagtt
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90057293 661 + 135538710 C-CTTTAAATCTTTAAGAAGCTCAGCCACCATCTCTTTACCTGACTCCTCTGGGAAGGAGTTTCCCTAGGTTAAGCCATACAGCAA-TAGGGCAGGAAG-TGCCATTTGGATCTAGGAGCAGAGGGCAGAGACTCAGCAGGAAGAGTGTCTCCATGAAAAGGAGACAGAGTAGAGCAGGTGCATAGGTTCACAGGGTCAGCTATGGATAGAGTCAGGTGTACA-CTTTCAGAAGCCACAATTCCCA---AAAGTCTCCTGACTACAACATCAGTGCACAGAGCCAGTCAAA--TGGAGGAGGAGTGGGTCCAGGCAATTCAGGCAGAAGGAAAGTAACAGATGAGTGGTTGCAGGAGGACACTGTTTCTGTCGAGGTCACTAGACAGAACATTGTCTCCACCTCTTAGCTTCGGAAGCAAGCAATGGAGGGTAAAAGTGTTGCCTGGGTTCTGGGGGCAAAGGCAGTAGATAACTTCTCTGTCATGTCCTCCAG-AAGGGCCC-G-GTTCAG-CCTCACAGGCCGA--GAAGTCTGTTTGGTTCCCAAGTA-CTAGA-GATGCTGCTATAAGGG-ACCCCCGAATTT-CCTGCCTGAACC--AGAGGCTGCCCAGGCTTTTCTTCCTGTTTTATATTTC-CCCAGGAA--GAACCTTGCCTGTACAATTACAA-GGTTCTACGatt
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             4701 660 +     13741 C-CTTTAAATCTTTAAGAAGCTCAGCCACCATCTCTTTACCTGACTCCTCTGGGAAGGAGTTTCCCTAGGTTAAGCCATACAGCAA-TAGGGCAGGAGG-TGCCATTTGGATCTAGGAGCAGAGGGCAGAGACTCAGCAGGAAGAGTGTCTCTATGAAAAGGAGACAGAGTAGAGCAGGTGCATAGGTTCACAGGGTCAGCTATGGATAGAGTCAGGTGCACA-CTTTCAGAAGCCACAATTCCCA---AAAGTCTCCTGACTCCAACATCAGTGCACAGAGCCAGTCAAA--TGGAGGAGGAGTGGGTCCAGGCaattcaggcagaaggaaagtaACAGATGAGTGGTTGCAGGAGGACACTTTTTCTGTCGAGGTCACTAGACAGAACATTGTCTCCACCTCTTAGCTTCGGAAGCAAGCAAT-GAGGGTAAAAGTGTTGCCTGGGTCCTGGGGGCAAAGGCAGTAGATAACTTCTCTGTCATGTCCTCCAG-AAGGGCCCGG-GTTCAG-CCTC-CAGGCCGA--GAAGTCTGTTTGGTTCCCAAGTA-CTAGA-GATGCTGCTATAAGGG-ACCCCCGAATTT-CCTGCCTGAACC--AGAGGCTGCCCAggcttttcttcctgttttatatTTC-CCCAGGAA--GAACCTTGCCTGTACAATTACAA-GGTTCTACGATT
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81228036 658 + 126035930 C-CTTTAAATCTTTAAGAAGCTCAGCCACCATCTCTTTACCTGACTCCTCTGGGAAAGAGTTTCCCTAGGTTAAGCCATACAGCGA-TAGGGCAGGAGG-TGCCATTTGGATCTAGGAGCAGAGGGCAGAGACTCAGCAGGAAGAGTGTCTCTATGAAAAGGAGACAGAGTAGAGCAGGTGCATAGGTTCACAGGGTCAGCTATGGGTAGAGTCAGGTGTACA-CTTTCAGAAGCCAGAATTCCCA---AAAGT---CTGACTACAACATCAGTGCACAGAGCCAGTCAAA--TGGAGGAGGAGTGGGTCCAGGCAATTCAGGCAGAAGGAAAGTAACAGATGAGTGGTTGCAGGAGGACACTTTTTCTGTCGAGGTCACTAGACAGAACATTGTCTCCACCTCTTAACTTTGGAAGCAAGCAATGGAGGGTAAAAGTGTTGCCTGGGTCCTGGGGGCAAAGGCAGTAGATAACTTCTCTGTCATGTCCTCCAG-AAGGGCCC-G-GTTCAG-CCTCACAGGCCGA--GAAGTCTGTTTGGTTCCCAAGTA-CTAGA-GATGCTGCTATAAGGG-ACCCCCGAATTT-CCTGCCTGAACC--AGAGGCTGCCCAGCCTTTTCTTCCTGTTTTATATTTC-CCCAGGAA--GAACCCTGCCTGTACAATTACAA-GGTTCTACGatt
i chlSab2.chr1                 C 0 I 212
s nasLar1.chrUn_JMHX01247963v1        0 661 +      1349 C-CTTTAAATCTTTAAGAAGCTCAGCCACCATCTCTTTACCTGACTCCTCTGGGAAGGAGTTTCCCTAGGTTAAGCCATACAGCCA-TAGGACAGGAGA-TGCCATTTGGATCTAGGAGCAGAGGGCAGAGACTCAGCAGGAAGAGTGTCTCTATGAAAAGGAGACAGATTGGAGCAGGTGCATAGGTTCACATGGTCAGCTATGGGTAGAGTCGGGTGTACA-CTCTCAGAAGCTACAATTCCCA---AAAGTCTCCTGACTACAACATCAGTGCACAGAGCCAGTGAAA--TGGAGGAGGAGTGGGTCCAGGCAATTCAGGAAGAAGGAAAGTAACAGATGAGTGGTTGCAGGAGGACACTTTTTCTGTCGAGGTCACTAGACAGAACATTGTCTCCACCTCTTAACTTCAGAAGCAAGCAATGGAGGGTGAAAGTGTTGTCCGGGTCCTGGGGGCAAAGGCAGTAGATAACTTCTCTGTCATGTCCTCCAC-AAGGGCCC-G-GTTCAG-CCTCACAGGCCGA--GAAGTCTGTTTGGTTCCCAAGTA-CTAGA-GATGCTGCTGTAAGGG-ACCCCCGAATTT-CCTGCCTGAACC--AGAGACTGCCCAGCCTTTTCTTCCTGTTTTATATTTT-CCCAGGAA--GAACCTTGCCTGCACAATTACAA-GGTTCTACGact
i nasLar1.chrUn_JMHX01247963v1 N 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=776040.000000
s hg38.chr14_KI270725v1_random    61559 458 +    172810 ctaaattccaatc-tagtcttccacatcattttgaaggtataatattatttgtcaaagtgggatgatagaacataAGT----GTGGACATAAAATTAAATTGTTGACAA-GGAAAAAAACTAAAATAAGaaaataagagagaaaaaatatatgtatgtacagtgg-ttagctagaaatatgccc--tttaaatatttggcatgtggtatgtg-------ggcctcaatgtgtactattgcact-agcttcccaaatattaaaggATGTCTTTTAAAAGAAAAACCTCTTGCT-AAAAGGTTAACAGTTAAAATAACCAGAGTGGCACAGGTACC---AGTCAT-TAAGTGAAACCTTTCATCTTCCCAGAATAGTACCTGTTCCCAAGCCAGCTTCGTTGAAAATCACTTTTCTCTCCTTTACTATTTAGTTTACAGATTGTATAGTAACAATACAGAAAC-CACAATAGTAGCAAAAAGA
s panTro4.chrUn_GL393527         139645 451 +    341619 ctaaattccaatc-tagtcttccacatcattttgaaggtataatattacttgtcaaagtggggtgatagaagatatGT----GTGGACA------TAAATTGTTGACAA-GGAAAAAAACTAAAATAAGAACATAAGAGAG-AAAAATGTATGTATGTACAGTGg-ttagctagaaatatgcct--tttaaatatttggcatgtggtatgtg-------ggcctcaatgtgtactattgcact-agcttcccaaatattaaaggATGTCTTTTAAAAGGAAAACCTCTTCCT-AAAAGATTAACAGTTAAAATAATCAGAGTGGCACAGGTACC---AGTCAT-TAAGTGAAAACTTTCATCTTCCCAGAATAGTACCTGTTCCCAAGCCAGCTTATTTGAAAATCACTTTTCTCTCCTTTACTATTTAGTTTACAGATTATATAGTAACAATACAGAAAC-CACAATAGTAGCAAAAAAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2074076 470 +  72422247 ctaaattccaatcttagtcttccacatcattttgaaggtataatattatttgtcaaagtgggatgatagaaggtatGT----GTGGACATAAAATTAAATTGTTGACAATGAAAAAAAACTAAAATAAGaaaataagagagaaaaaatatatgtatgtacagtggtttagctagaaatatgccctttttaaatatttggcatgtggtatgtg-------ggcctcaatgtgtactactgcactaagcttcccaaatattaaaggATGTCTTTTGAAAGAAAAGCCTCTTGCTAAAAAGGTTAACAGTTAAAATAACCCGAGTGGCACAGGTACCTAAGATCATATAAGTGAAACCTTTCATCTTCCCAGAATAGTACCTGTTCCCAAGCCAGCTTCTTTGAAAATCACTTTTCTCTCCTTTACTATTTAGTTTACAAATTGTATAGTAACAATACAGAAACTCACAATAGTAGAAAAAAAA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90057954 456 + 135538710 ctaaattccaacc-tagccttccacatcattttgaaggtgtagtattatttgtcaaagtgcgatgatacaagatatGT----GTGGACATAAAATTAAATTGTTGACAA-GGAAAAAAACTAAAATAAAAAA--AAGAGAGAAAAAATATATGTATGTacagtgg-tcagctagaaatatgcct--tttaaatatttggcatgtggtatgtg-------ggcctcaatgtgtactattgcact-agcttcacaaacattaaaggATGTCTTTTAAAAGAAAAACCTCTTGCT-AAAAGGTTAAGAGTCAAAATAACCTGAGTGGAACAGGTACC---AGTCAT-TAAGTGAAACCTTCCATCTTCCCAGAACAATACCTCTTCCCAAGCCAGCTTCTTTGAAAATCACTTTTCTCTCTTTTACTATTTAGTTTATAAATTGCATAGTAATAATACAGAAAC-CACAATAGTAGAGAAAAAA
i rheMac3.chr14                C 0 I 1
s papAnu2.AHZZ01138950             5361 462 +     13741 CTAAATTCCAACC-TAGCCTTCCACATCATTTTGAAGGTGTAATATTATTTGTCAAAGTGGGATGATACAAGATATGT----GTGgacataaaattaaattgttgacaa-ggaaaaaaactaaaataaaaaa--aagagagaaaaaatatatatatgtacagtgG-TCAGCTAGAAATATGCCT--TTTAAATATTTGGCATGTGGTATGTGTACCTCATGCCTCAATGTGTACTATTGCACT-AGCTTCACAAACATTAAAGgatgtcttttaaaagaaaaacctcttGCT-AAAAGGTTAAGAGTCAAAATAACCTGAGTGGCACAGGTACC---AGTCAT-TAAGTGAAACCTTCCATCTTCCCAGAACAGTACCTCTTCCCAAGCCAGCTTCTTTGAAAatcacttttctctcttttactaTTTAGTTTATAAATTGCATAGTAACAATACAGAAAC-CACAACAGTa-cgaaaaaa
i papAnu2.AHZZ01138950         C 0 I 1
s chlSab2.chr1                 81228906 458 + 126035930 ctaaattccaacc-tagccttccacatcattttgaaggtgtaatattatttgtcaaagtgggatgatagaagatatGT----GTGGACATAAAATTAAATTGTTGACAA-GGAAAAAAACTAAAATAAAaaagtaagagagaaaaaatatatgtatgtacagtga-tcagctagaaatatgcct--tttaaatatttggcatgtggtatgtg-------ggcctcaatgtgtactattgcact-agcttcacaaacattaAAAGATGTCTTTTAAAAGAAAAACCTCTTGCT-AAAAGGTTAAGAGTCAGAATAACCTGAGTGGCACAGGTACC---AGTCAT-TAAGTGAAACCTTCCATCTTCCCAGAACAGTACCTCTTCCCAAGCCAGCTTCTTTGAAAATCACTTTTCTCTCTTTTACTATTTAGTTTATAAATTGCATAGTAACAATACAGAAAC-CACAATAGTAGAAAAAAAA
i chlSab2.chr1                 I 212 I 216
s nasLar1.chrUn_JMHX01247963v1      661 460 +      1349 ctaaattccaacc-tagccttccacatcattttgaaggtgtactattatttgtcaaagtgggatgatagaagatatGTGTGGGTGGACGTAAAATTAAATTGCTGACAA-GGAAAAAAAATAAAATAaaaga--aagagagaaaaaatatatgtatgtacagtgg-tcagctagaaatatgcct--tttaaatatttggcatgtggtatgtg-------ggcctcaatgtgtactattgcact-agcttcacaaacattaaaggATGTCTTTTAAAAGAAAAACCTCTTGCT-CAAAGGTTAACAGTCAAAATAACCTGAGCAGCACAGGTACC---AGTCAT-TAAGTGAAACCTTCCATCTTCCCAGAATAGTACCTCTTCCCAAGCCAGCTTCTTTGAAAATCACTTTTCTCTCTTTTACTATTTAGTTTATAAATTGCATAGTAACAATACAGAAAC-CACAATAGTAGAAAAAAAA
i nasLar1.chrUn_JMHX01247963v1 C 0 I 1
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=352084.000000
s hg38.chr14_KI270725v1_random    62017 233 +    172810 TAAAGAATATTTTTAAATGAAAACTCACATCCTAACTCTACCAAAA-CACGAAAATTAAACCTGAATGCCTCCCATT-CCTGATATATTTTTC-ACCTAAAT-ATTCAGCTCTGGGATTGCATTGTTTTTGGATTGAGTGGAAATTATTGCCTGGTCTTGAAAT-CTTCCATAA--tgtgtgtgtgtgtgtgggtgtgtgcgtgtg---tgtgtgtgtgtgtg------tatgtgtgtgtgGTGAATAT
s panTro4.chrUn_GL393527         140096 241 +    341619 TAAAGAATATTTTTAAATGAAAACTCACATCCTAACTCTACCAAAA-CATGAAAATTAAACCTGAATGCCTCCCATT-CATGATATATTTTTC-ACCTAAAT-ATTCAGCTCTGGGATTGCATTGTTTTTGGATTGAGTGGAAATTATTGCCTGGTCTTGAAAT-CTTCCATAAtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtg---tgcgtgtgtgtatgtgtatatatgtttgtgtgGTGAATAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2074546 243 +  72422247 -AAAGAATATTTTTAAATGAAAACTCACATCCTAACTCTACCAAAA-CATGAAAATTAAACCTGAATGCCTCCCATT-CCTGGTATATTTTTC-ACCTAAAT-ATTCAGCTCTAGGATTGCATTGTTTTTGGATTGAGTGGAAATTATTGCCTGGTCTTGAAAT-CTTCCATAAtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcgcgccgcgtgcgtgtgtgtgtatgtatgtgtgtgtgGTGAATGT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90058411 218 + 135538710 TAAAGAATATTTTTAAATGAAAACTCACATCCTAACTCTACAAAAAACATGAAAATTAAACCTGAATGCCTCCCTTT-CCTGATATATTTTTC-ACCTAAAT-ATTCAGTTCTTGGATTGCATTGCTTTTGGATTGAGTGGAAATTACTGCCTGGTCTCAAAAT-CTTCCATAATATAtgtgtgtgtgtacgtgtgtgtt---------tgtgtgtgtgtgtg------------------GTGAATGT
i rheMac3.chr14                I 1 C 0
s papAnu2.AHZZ01138950             5824 218 +     13741 taaagaatatttttaaatgaaaactcaCATCCTAACTCTACCAAAACAGTGAAAATTAAACCTGAATGCCTCCCTTT-CCTGATATATTTTTC-ACCTAAAT-ATTCAGTTCTTGGATTGCATTGTTTTTGGATTGAGTGGAAATTACTGCCTGGTCTCAAAAT-CTTccataatatatgtgtgtgtgtacgtgtgtgtt---------tgtgtgtgtgtgtg------------------gtgaatgt
i papAnu2.AHZZ01138950         I 1 C 0
s chlSab2.chr1                 81229580 217 + 126035930 TAAAGAATATTTTAAAATGAAAACTCACATCCTAACTCTACCAAAA-CATGAAAATTAAACCTGAATGCCTCCCTTT-CCTGATATATTTTTC-ACCTAAAT-ATTCAGTTCATGGATTGCATTGTTTTTGGATTGAGTGGAAATTACTGCCTGGTTTCAAAAT-CTTCCATAATATAtgtgtgtgtgtacgtgtgtgtt---------tgtgtgtgtgtgtg------------------gtgAATGT
i chlSab2.chr1                 I 216 C 0
s nasLar1.chrUn_JMHX01247963v1     1122 227 +      1349 NAAAGAATATTTTTAAATGAAAACTCACATCCTAACTCTACCAAAA-CATAAAANTNAAACCTGAATGCCTCCCTTTCCCTGATATATTTTTCTACCTAAATAATTCAGTTCTTGGATTGCATTGTTTTTGGATTGAGAGGAAATTACTGCCTGGTCTCAAAATACCTCCATAATATAtgtgtgtgtgtacgtgtgtgtttgtgtg---tgtgtgtgtgtgtg------------------GTGAATGT
i nasLar1.chrUn_JMHX01247963v1 I 1 N 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=121184.000000
s hg38.chr14_KI270725v1_random    62250 113 +    172810 ATTTCTTTTT-GTTCAGAGCAAACATTTTTTCAATATGTATATTTATTTTA-GGCAGATTATG-----------------------CTAGTAATTTTCTACAAATGTGCTTTTTAAAAAATAACCTTTAATTTAAAAA
s panTro4.chrUn_GL393527         140337 113 +    341619 ATTTCTTTTT-GTTCAGAGCAAACATTTTTTCAATATGTATATTTATTTTA-GGCAGATTATG-----------------------CTAGTAATTTTCTACAAATGTGCtttttaaaaaataacctttaatttaaaaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2074789 138 +  72422247 ATTTCTTTTTGGTTCAGAGCAAACATTTTCTCAATATGTATATTTATTTTAGGGCAGATTTTATTTTAGGTATATTTATTTTAGGTCTAGTAATTTTCTACAAATGTGCtttttaaaaaataacctttaatttaaaaa
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90058629 111 + 135538710 ATTTCTTCTT-GTTCAGTGTAAAT-TTTTTTCAATATGTATGTATA-TTTA-GGCAGATTATG-----------------------CTAGTAATTTTCTACAAATGTGCtttttaaaaaataatctttaattcaaaaa
i rheMac3.chr14                C 0 I 1
s papAnu2.AHZZ01138950             6042 110 +     13741 atttcttttt-gttcagagcaaat-ttttttcaatatgtatatata-ttta-ggcaAATTATG-----------------------CTAGTAATTTTCTacaaatgtgctttttaaaaaataatctttaa-taaaaaa
i papAnu2.AHZZ01138950         C 0 I 1
s chlSab2.chr1                 81229797 111 + 126035930 ATTTCTTCTT-GTTCAGAGCAAAT-TTTTTTCAATATGTATGTATA-TTTA-GGGAGATTATG-----------------------CTAGTAATTTTCTACAAATGTGCTTTTTAAAAAATAATCTTTAATTCAAAAA
i chlSab2.chr1                 C 0 I 1
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=-2040.000000
s hg38.chr14_KI270725v1_random    62363 2 +    172810 AT-
s panTro4.chrUn_GL393527         140450 2 +    341619 aa-
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2074927 2 +  72422247 aa-
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90058741 1 + 135538710 -a-
i rheMac3.chr14                I 1 C 0
s papAnu2.AHZZ01138950             6153 1 +     13741 -a-
i papAnu2.AHZZ01138950         I 1 C 0
s chlSab2.chr1                 81229909 1 + 126035930 -A-
i chlSab2.chr1                 I 1 C 0
s rhiRox1.JABR01191668v1           1048 2 -      1304 -AT
i rhiRox1.JABR01191668v1       N 0 N 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=244018.000000
s hg38.chr14_KI270725v1_random    62365 200 +    172810 A-----TATTCTTACTCAGTGGCCCACAATTGTTAAAAATGCTACTAATGGAgctgggtatggtgacatacacctgtcatcccagctacttgggagactgaggcaggggtattgcttaaacttgggaatgtgaaaccagcctgggcaacatagtgagatc-tcaatctcaaaaaTCAATCAATCATTAA-----AAAATAAAATAAAACAC
s panTro4.chrUn_GL393527         140452 208 +    341619 aa--attattCTTACTCAGTGGCCCACAATTGTTAAAAACGCTACTAATGGAgctgggtatggtgacacacccctgtcatcccagctacttgggagactgaggcaggggtattgcttaaacttgggaatgtgaaaccagcctgggcaacatagtgagatc-ccaatctcaaaaaTCAATCAATCattaaaaaataaaataaaataaaaCAC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2074929 208 +  72422247 a---attattCTTACTCAGTGGCCCACAATTGTTAAAAACGCTACTAATGGAgttgggtatggtgacacacacctgtcatcccagctacttgggagactgaggcaggggtatcgcttaaacttgggaatgtgaaaccagcctgggcaacacagtgagaccgccaatctcaaaaaTCAATCAATCattaaaaaataaaataaaataaaaCAC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90058742 204 + 135538710 -ataattaGTCTTACCCAGTGGCCCACAATTGTTAAAAACACTACTAATGGAgctgggtatggtgacatacacctgtcgtcccagctactcgggagactgaggcaagggtattgcttgaatctgggaatgtgaaaccatcctgagcaatatagtgagacc-cccatctcaaaaaCTGATCAATCATTAA-----AAAATAAAGTAAAACAC
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6154 204 +     13741 -ataattattcttaccCAGTGGCCCACAATTGTTAAAAACACTACTACtggagctgggtatggtgacatacacctgtcgtcccagctactcgggagactgaggcaagggtattgcttgaatctgggaatgtgaaaccatcctgagcaacatagtgagacc-cccatctcaaaaatcgatcaatcattaa-----aaaataaagtaaaacat
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81229910 204 + 126035930 -ATAATTATTCTTACCCAGTGGCCCACAATTGTTAAAAACACTACTAATGGAgctgggtatggtgacacacacctgtcatcccagctacttaggagactgaggcaaggatattgcttgaatctgggaatgtgaaaccatcctgagcaacatagtgagacc-cccatctcaaaaaTCGATCAATCTTTAA-----AAAATAAAGTAAAACAC
i chlSab2.chr1                 C 0 I 231
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=467833.000000
s hg38.chr14_KI270725v1_random    62565 404 +    172810 TACTAATAGCTTTTTAAAAAATAGTTCTTAACCAA-TTTTCCTAACACCTTCCTTTCCTCACTGAAGTATAGAAATATGTggtcaggcactgtggctcacacttataatcccaataatttgggaagccaaggcatgagggtcagttgattccaggagttcaagactagccagggtgacataaggatacttggtctctaacaaaaattttttt-gttctttaattaccagggcatgatggtacatgcttgtagcccagctacttgg-aagactgaggtaagag-aatcacttgagcccaggagg--tcaaggctgcagtgagccat-ggttgcaccactgca-cttcatacctgggtgacagagtgagacacagtatcaaaaacaaacaaaaaacaacaaaaaGTATTTGTTT
s panTro4.chrUn_GL393527         140660 403 +    341619 TACTAATAGCTTTTTAAAAAATAGTTCTTAACCAA-TTTTCCTAGCACCTTCCTTTCCTCAGTGAAGTATAGAAATATGTggtcaggcactgtggctcacacctataatcccaataatttgggaagccaaggcatgaggatcagttgattccaggagttcaagactagccagggtgatataatgagacttggtctctaacaaaaaatttttt--ttctttaattaccagggcatgatggtgcatgcctgtagcccagctacttgg-aaggctgaggtaggag-aatcacttgagcccaggagg--tcaaggctgcagtgagccat-ggttgcaccactgca-ctccatacctgggtgacagagtgagacacagtatcaaacacaaacaaacaacaacaaaaaGTATTTGTTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075137 412 +  72422247 TACTAATAGCTTTTTAAAAAATAGTTCTTAACCAATTTTTCCTAGCACCTTCCTTTCCTCAGTGAAGTATAGAAATATGTggtcaggcactgtggctcacacctataatcccaataatttgggaagccaaggcatgaggatcagttgattccaggagttcaagactagatagggtgacataatgagacttggtctctaaaaaaaaattttttttttctttaattaccagggcatgatggtgcatgcctgtagcccagctacttggaaaggctgaggtaggagaaatcacttgagcccagggaggtccaaggctgcagtgagccatgggttgcaccactgcagctccatacctgggtgacagagtgagacacagtagcaaaaacaaacaaacaacaacaaaaaGTATTTGTTT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90058946 388 + 135538710 GACTAATAGCTTTTTAAAAAATATTTCTTAATCAA-TTTTCCTAGCACCTTCCTTTCCTCAGTGAAGTATAGAAATATGTggtcaggcactgtggctcacacctgtaatcccgataatttgggaagccaaggcatgaggatcagttgagtataggagttcaacaccagccagggcaacataatgagactcgatccctaaaaaaaa--ttttt--ttctttaattaccagggcatgacggtgcatgcctatagcccagctacttgg-aaggctgaggtaggat-aactacttgggccccggagg--tcaaggctgcagtgagccat-ggacgcaccactgta-ctccatacctgagacacagagtgagacacagtatc-------------aaaaaaaaaaaaGTGTTTGTTT
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6358 391 +     13741 gactaatagctttttaaaaaatatttcttaatcaa-TTTTCCTAGCACCTTCCTTTCCTCAGTGAAGTATAGAAATATGtggtcaggcactgtggctcacacctgtaatcccgataatttgggaagccaaggcatgaggatcagttgagtccaggagttcaagaccagccagggcaacataatgagactcgatctctaaaaaaaa--ttttt--ttctttaattaccagggcatgatggtgcatgcctatagcccacctacttgg-aaggctgaggtaggag-aactactagggcccaggagg--tcaaggctgcagtgagccat-ggatgcaccactgta-ctccatacctgggacacagagtgagacacagtatc----------aaaaaaaaaaaaaaagtgtttgttt
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230345 396 + 126035930 GACTAATAGCTTTTTAAAAAGTACTTCTTAATCAA-TTTTCCTAGCACCTTCCTTTCCTCAGTGAAGTATAGAAATATGTggtcaggcactgtggctcacacctgtaatcccgataatttgggaagccaaggcatgaggatcagttgagtccaggagttcaagaccagccagggcaacataatgagactcgatctctaaaaaaaa-tttttt--ttctttaattaccagggcatgatggtgcatgcctatagcccagctacttgg-aaggctgaggtaggag-aactacttgggcccaggagg--tcaaggctgcagtgagccat-ggatgcaccactgta-ctccatacctgggacacagagtgagacacaggatccaaa------aaaaaaaaaaaaaaaGTGTTTGTTT
i chlSab2.chr1                 I 231 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=762.000000
s hg38.chr14_KI270725v1_random    62969 4 +    172810 TAGA-
s panTro4.chrUn_GL393527         141063 3 +    341619 TAG--
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075549 3 +  72422247 TAG--
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059334 3 + 135538710 TAG--
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6749 3 +     13741 tag--
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230741 3 + 126035930 TAG--
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60135745 4 -  73491278 tag-g
i otoGar3.GL873520             N 0 I 45
e gorGor3.chr10                93750793 41112 - 147764049 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=3228.000000
s hg38.chr14_KI270725v1_random    62973 5 +    172810 AAAAA-
s panTro4.chrUn_GL393527         141066 5 +    341619 AAAAA-
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075552 5 +  72422247 AAAAA-
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059337 6 + 135538710 AAAAAA
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6752 6 +     13741 aaaaaa
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230744 6 + 126035930 AAAAAA
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60135749 45 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=2548.000000
s hg38.chr14_KI270725v1_random    62978 1 +    172810 A
s panTro4.chrUn_GL393527         141071 1 +    341619 A
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075557 1 +  72422247 A
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059343 1 + 135538710 A
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6758 1 +     13741 a
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230750 1 + 126035930 A
i chlSab2.chr1                 C 0 C 0
s nasLar1.chrUn_JMHX01274021v1      255 1 +       666 A
i nasLar1.chrUn_JMHX01274021v1 N 0 N 0
s rhiRox1.KN297695v1              39368 1 +    134106 A
i rhiRox1.KN297695v1           N 0 I 5676
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60135749 45 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=44715.000000
s hg38.chr14_KI270725v1_random    62979 33 +    172810 CATTTGGTGAGGTTGGGGCTTAAAAATATATTA
s panTro4.chrUn_GL393527         141072 33 +    341619 CATTTGGTGAGGTTTGGGCttaaaaatatatta
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075558 33 +  72422247 CATTTGGTGAGGTTTGGGCttaaaaatatatta
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059344 33 + 135538710 CATTTGATGAGGTTTGGGCTTAAAAATATATTA
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6759 33 +     13741 catttggtGAGGTTtgggcttaaaaatatatta
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230751 33 + 126035930 CATTTGGTGAGGTTTGGGCTTAAAAATATATTA
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60135749 45 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=11946.000000
s hg38.chr14_KI270725v1_random    63012 9 +    172810 TTCTAAAAT
s panTro4.chrUn_GL393527         141105 9 +    341619 ttctaaaat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075591 9 +  72422247 ttctaaaat
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059377 9 + 135538710 TTCTAAAAT
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6792 9 +     13741 ttctaaaat
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230784 9 + 126035930 TTCTAAAAT
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60135794 9 -  73491278 cacccagac
i otoGar3.GL873520             I 45 I 15
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=11929.000000
s hg38.chr14_KI270725v1_random    63021 16 +    172810 ATTCATAAATATTCTC
s panTro4.chrUn_GL393527         141114 16 +    341619 attcataaatattCTC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075600 16 +  72422247 attcataaatattCTC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059386 15 + 135538710 GTTCG-AAACATTCCC
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6801 15 +     13741 gttaG-AAACATTCCC
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230793 15 + 126035930 GTTCG-AAACATTCCC
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60135803 15 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=4638.000000
s hg38.chr14_KI270725v1_random    63037 3 +    172810 TAG
s panTro4.chrUn_GL393527         141130 3 +    341619 TAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075616 3 +  72422247 TAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059401 3 + 135538710 TAG
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6816 3 +     13741 TAG
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230808 3 + 126035930 TAG
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60135818 3 -  73491278 ttg
i otoGar3.GL873520             I 15 I 409
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=444200.000000
s hg38.chr14_KI270725v1_random    63040 381 +    172810 TAATGATAAGATTAAAGTGACAaagacaaacttttttcctgtacagttccatctctcaccttcccgtaatttgtCTGTCCCATCCAGCTTCCAAAGGaaattatttac-aaaataatgtctgcatcctgggtctatatatctattgcctatgaggagagcgtttaagatctgagccatcttcaagtcttatactttgtgtatagctctcatgtttttgcaggttaagt-aagtttgt-ataccctttctttt-attaatctgtgtatggtcagttcatttcgggt-aatcttcagagggtgaaaggg-gaagcttttcacttcactcctacTGTGA-CAACTAACTACCTTCTTACTTATTCAA-TTTTTTAGTCTATATCAacacttt
s panTro4.chrUn_GL393527         141133 377 +    341619 TAATGATAAGATTAAAGTGACAaagacaaacttttttcctgtgcagttccatctctcaccttcccgtaatttgtCTGTCCCATCCAGCTTCCAAAGGaaattatttac-aaaataatgtctgcatcctgagtctatatatctattgcctatgaggagagcgtttaagatctgagccatcttcaagtcttatactttgtgtatagctctcatgtttttgcaggttaagt-aagtttct-ataccctttctttt-attaatctgtgtatggtcagttcatttcgggt-aatctgcagagggtgaaaggg-gaagcttttcacttcactcctacTGTGA-CAACTAACTACCTT----CTTATTCAA-TTTTTTAGTCTATATCAACACTTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2075619 388 +  72422247 TAATGATAAGATTAAGGTGACAaagacaaacttttttcctgtgcagttccatctctcaccttcccgtaatttgtCTGTCCCATCCAGCTTCCAAAGGAAATTATTTACAAAAATAATGTCTGCATCCTGGGTCTGTATATCTATTG-ctatgaggagagcgtttaagatctgagccatcttcaagtcttatactttgtgtatagctctcatgtttttgcaggttaagtaaagtttgcaataccctttctcttaattaatctgtgtatggtcagttcatttcgggtaaatcttcagagggtgaaagggagaagcttttcacttcactcctacTGTGACCAGCTAACTACCTTCTTACTTATGCAATTTTTTTAGTATATATCAACCCTTT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059404 369 + 135538710 TAATGATAAAATTAAAGTGACAaagacaaactttgttcctgtgcagttccatctctcaccttcccgtaa--tgtctgtcccatccagcttccaaaggaaattatttac-aaaataatgtctgtatactgggtctatatttctgttgcctatgaggagagcatttaagatctgagccatcttcaagtcttatactttgtgtatggctgtcatgtttatgcaggttaagt-aaatttgt-atgccctttctctt-attaatctgtgtatggtcagtt-----------catcttcagagggtgaaaggg-gaagattttcatttcactcctacTGTGA-CAGTCAACTACCTTTTTACTGATTCAA-CTTTTTAGTATATATCAATACTTT
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             6819 369 +     13741 TAATGATAAGATTAAAGTGATAAAGACAAACTTTGTTCCTGTGCAGTTCCATCTCTCACCTTCCCGTAA--TGTCTGTCCCATCCAGCTTCCAAAggaaattatttac-aaaataatgtcTGCATCCTGTGTCTATATTTCTGTTGCCTATGAGGAGAGCATTTAAGATCTGAGCCATCTTCAAGTCTTATACTTTGTGTATGGCTGTCATGTTTATGCAGGTTCAGT-AAGTTTGT-ATGccctttctctt-attaatctgtgTATGGTCAGTT-----------CATCTTCAGAGGGTGAAAGGG-AAAGATTTTCACTTCACTCCTACTGTGA-CAGTCACCTACCtttttactgattcaa-ttttttagtatatatcaatacttt
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81230811 368 + 126035930 TAATGATAAGATTAAAGTGATAaagacaaactttgttcctgtgcagttccatctctcaccttcccgtaa--tgtctgtcccatccagcttccaaaggaaattatttac-aaaataatgtctgtatcctgggtctatatttctgttgcctatgaggacagcatttaagatctgagccatcttcaagtcttatactttgtgtatggctgtcatgtttatgcatgttaagt-aagtttgt-atgccctttctctt-attaatctgtgtatggtcagtt-----------catcttcagagggtgaaaggg-gaagattttcacttcactcctacTGTGA-CAGTCAACTACCTTTTTACTGATTCAA-TTTTTT-GTATATATCAATACTTT
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60135821 409 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=474.000000
s hg38.chr14_KI270725v1_random    63421 1 +    172810 c
s panTro4.chrUn_GL393527         141510 1 +    341619 C
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2076007 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059773 1 + 135538710 T
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             7188 1 +     13741 t
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81231179 1 + 126035930 T
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60136230 1 -  73491278 C
i otoGar3.GL873520             I 409 I 566
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=15118.000000
s hg38.chr14_KI270725v1_random    63422 12 +    172810 atatacatttac
s panTro4.chrUn_GL393527         141511 12 +    341619 ATATACATTTAC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2076008 12 +  72422247 ACATACATTTAC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90059774 12 + 135538710 ACATGCATTTAC
i rheMac3.chr14                C 0 I 457
s papAnu2.AHZZ01138950             7189 12 +     13741 acatacatttac
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81231180 12 + 126035930 ACATACATTTAC
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60136231 566 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=119013.000000
s hg38.chr14_KI270725v1_random    63434 158 +    172810 tttt-aaacaaaattt-tccat-cattacacttaaaattttatttaccttttaaaaaggaaattaaaaataaaattaaaaattataaaattttacataataaaaataaaataaatgatttatataaaaatt-aaTCTGACCTGTGAAAAACACTATCCAGAg
s panTro4.chrUn_GL393527         141523 157 +    341619 TTTT-AAACAAAATTT-TGCAT-CATTACACttaaaattttatttacatttt-aaaaggaaattaaaaataaaattaaaaattttaaaattttacataataaaaatgaaataaatgatttatataaaaatt-aatCTGACCTGTGAAAAACACTATCCAGAg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2076020 162 +  72422247 TTTTAAAACAAAATTTCTGCATCCATTACACTTAAAATTTTATTTACCTTTTAAAAAGGaaattaaaaataaatttaaaaattataaaattttacataataaaaataaaataaatgatttatataaaaattaaatctgacctgtgaaaaacactatccagag
i ponAbe2.chrUn                C 0 C 0
s papAnu2.AHZZ01138950             7201 153 +     13741 tttt-aaacaaaattt-tgcat-cattacacttaaaattctacttactttttaaaaagaaaattaaaaataaatttaaaaattataaaattttaaataataaaaataaaataaattatttatataaaaatt-aat-----ctgtgaaaaacactatcaagag
i papAnu2.AHZZ01138950         C 0 I 388
s chlSab2.chr1                 81231192 153 + 126035930 TTTT-AAACAAAATTT-TGCCT-CattacacttaaaattctacttaccttttaaaaagaaaattaaaaataaatttaaaaattataaaattttaaatAATaaaaataaaataaatgatttatataaaaatt-aat-----ctgtgaaaaacactatcaagag
i chlSab2.chr1                 C 0 I 388
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90059786 457 + 135538710 I
e otoGar3.GL873520             60136231 566 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=138221.000000
s hg38.chr14_KI270725v1_random    63592 573 +    172810 gccaggcgcggtggttaacgcttgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggcgatctagaccacgatgaaacccc-actctaccaaaaatacaaaaaaatagccgggtgtagtggcgggctcctgtagtcccagccactcaaagaggctgaggcaggagaatggcgtgaatccaggaggcggagcttgcagtgagccgagatcgtgccactgcaatccagcctgggtgacagagccagactctgtcaaaaaaaaaaa--------aaaaagaaaaagaaaaac--actatcgagagaataaaaagacaaa-tcacagactgggagtaaaaattta-caaaagctatatctggtgaagatacatttgttatccaaaatatacaaagaactctcaggactcaataataggaaaacaaatagtctaacacaaatgtagagatctgaacagacatttcaccatagaatacagat-ggatgatacgtaagaacattgaaagatgttcaacatcattcatcattagggaaatgtaaattaaaaccacaatgagatactgctacatgcctatt
s panTro4.chrUn_GL393527         141680 579 +    341619 gccaggcgcggtggctaatgcttgcaatcccagcactttgggagaccgaggtgggtggatcacgaggttaggcgatctagaccacgatgaaacccc-tctctaccaaaaatacaaaaacttagccgtgcatagtggtgggcgcctgtagtcccagccactcggagaggctgaggcaggagaatggcttgaaccagggaggcggagcttgcagtgagccgagatcgtgccactgcaatccagcctgggtgagagagccaga--ctgtcaaaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaac--actattgagagaataaaaagacaaa-tcacagactgggagtaaaaattta-caaaagctatatctggtgaagatacatttgttatccaaaatatacaaagaactctcaggactcaataataggaaaacaaatagtctaacacaaatgtagagatctgaacagacatttcaccatagaatacagat-ggatgatacgtaagcacattgaaagatgttcaacatcattcatcattagggaaatgtaaattaaaaccacagtgagatactgctacatgcctatt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2076182 580 +  72422247 gccaggcgcggtggctcacctttgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggcgatctagaccacagtgaaaccccgtctctaccaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtactcccagctactcgg-gaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcagagatcgcgccactgcactccagcctgggcaacagagccaga--ctgttcaaaaaaaaaa----taagaaaagaaaaatgaaaaaccacctatcgagagactaaaaagacaaattcacagactgggagtaaaaatttattaaaagctatatctgctgaagatatatttgttatccaaaatatacaaagaactctcaggactcaataataagaaaacaaatagtctaacacaaatgtagagatctaaacagacattttaccatagaatacagatgggatgatacgtaagcacattgaaagatgttcaacatcattcatcattagggaaatgcaaattaaaaccacaataagatactgctacatgcctatt
i ponAbe2.chrUn                C 0 I 232
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90059786 457 + 135538710 I
e otoGar3.GL873520             60136231 566 -  73491278 I
e chlSab2.chr1                 81231345 388 + 126035930 I
e papAnu2.AHZZ01138950             7354 388 +     13741 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=37083.000000
s hg38.chr14_KI270725v1_random    64165 416 +    172810 agaatagctaaaatttaaaagactgaccatactaaacattggtgagaacacaaaggaacaggaatgctcatacactgctgctggaaatacagccactttgtcagtttctttaaaagttaaactggccgggagcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcgggaaatcgagaccatcctagctaacacggtgaaaccccgtatctactaaaaatacaaaaaattagccgggcgtggtggcgagcgcctgtaatcccagctactccggaggctgaggcaggagaatggcgtgaacctgggaggcggagctttcagtgagcctccatgcaccactgcactccagcctgggcgacagagcgagactctgtctc----aaaaaaaaaaaaa
s panTro4.chrUn_GL393527         142259 420 +    341619 ataatagctaaaatttaaaagactgaccatactaaacattggtgagaacacaaaggaaaaggaatgctcatacactgctgctggaaatacagccactttgtcagtttctttaaaagttaaactggccgggagcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcaggaggtcgggaaatcgagaccatcctagctaacacggtgaaaccccgtatctactaaaaatacaaaaaattagccgggcgtggtggcgagcacctgtaatcccagctactccggaggctgaggcaggagaatggcatggacccaggaggtggagccttcagtgagccccgatgcaccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaa
i panTro4.chrUn_GL393527       C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90059786 457 + 135538710 I
e otoGar3.GL873520             60136231 566 -  73491278 I
e chlSab2.chr1                 81231345 388 + 126035930 I
e papAnu2.AHZZ01138950             7354 388 +     13741 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=7424.000000
s hg38.chr14_KI270725v1_random    64581 9 +    172810 aaaatttaa
s panTro4.chrUn_GL393527         142679 9 +    341619 aaaagttaa
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90060243 9 + 135538710 aaaagttaa
i rheMac3.chr14                I 457 C 0
s papAnu2.AHZZ01138950             7742 9 +     13741 aaaagttaa
i papAnu2.AHZZ01138950         I 388 C 0
s chlSab2.chr1                 81231733 9 + 126035930 aaaagttaa
i chlSab2.chr1                 I 388 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60136231 566 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=4965.000000
s hg38.chr14_KI270725v1_random    64590 6 +    172810 acatat
s panTro4.chrUn_GL393527         142688 6 +    341619 aaatat
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90060252 6 + 135538710 acatat
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             7751 6 +     13741 acatat
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81231742 6 + 126035930 acatat
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60136797 6 -  73491278 acttgc
i otoGar3.GL873520             I 566 I 231
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=156831.000000
s hg38.chr14_KI270725v1_random    64596 189 +    172810 cacaccacttagtcattcaaatcctgcttatttgcccaagacaaatgaaagcgtatgtccaaacgattggacaaacattcgtagcaactttatttgaaatagcaaaaacaactggaagcaaaccaaatgtccatcaagaggtgagtagatacactaactgtagaatatccatacaataaaaC--TTTTTTT
s panTro4.chrUn_GL393527         142694 191 +    341619 cacaccacctagtcattcaaatcctgcttatttgcccaagacaaatgaaagtgtatgtccaaacgattggacaaacattcatagcaactttattagaaatagcaaaaacaactggaagcaaaccaaatgtccatcaagaggtgaatagatacactaactgtagaatatccatacaataaaaCTATTTTTTT
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90060258 191 + 135538710 cacaccacctcttcattcaaattctgcttatttacccaagacaaatgaaagtgtatgtccaaacggttggacaaacattcatagcagctttatttgaaatagcaaaaacaactggaagcaagccaaatgtccatcaagatgtgaatagatacactaactgtagaatatccatacaataaaaCTATTTTTAA
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             7757 191 +     13741 caCACCACCTCTTCATTCAAATTCTACTTATTTACCCAAGACAAATGAAAGTGTATGTCCAAACGGTTGGACAaacattcatagcagctttatttgaaATAGCGAAAACAACTGGAAgcaagccaaatgtccatcaagatgTGAATAGATACACTAATTATAGAATATCCAtacaataaaactatttttaa
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81231748 187 + 126035930 cacaccacctcgtcattcaaattctgcttatttacccaagacaaatgaaagcgtatgtccaaacagttggacaaa----catagccgctttatttgaaatagcaaaaacaactggaagcaagccaaatgtccatcaagatgtgaatagatacactaactgtagaatatccatacaataaaaCTATTTTTTA
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60136803 231 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=8155.000000
s hg38.chr14_KI270725v1_random    64785 16 +    172810 TAAACTAAGGGGCAAA-
s panTro4.chrUn_GL393527         142885 16 +    341619 TAAACTACGGGGCAAA-
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90060449 15 + 135538710 AAAATTATGGGGC-AA-
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             7948 15 +     13741 aaaattatggggc-aa-
i papAnu2.AHZZ01138950         C 0 C 0
s chlSab2.chr1                 81231935 15 + 126035930 AAAATTATGGGGC-AA-
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60137034 16 -  73491278 taagataagggcc-aaa
i otoGar3.GL873520             I 231 I 479
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=66303.000000
s hg38.chr14_KI270725v1_random    64801 78 +    172810 AAACAAAAAAACAAAGATAGAATCTAACTTCTTGGTAAATACATTCACTATTAGGGTTTTTATAACAGAGAAGTCATT
s panTro4.chrUn_GL393527         142901 78 +    341619 AAACAAAAAACCAAAGATAGAATTTAACTTATTGGTAAATACATTCACTATTAGGGTTTTTATAACAGAGAAGTCATT
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90060464 78 + 135538710 AAACAAAAAAACAAAGATAGAATCTAACCTCTTGGTAAATACATTCACTATTAGGGTTTTTATAACAGAGAAGTCATT
i rheMac3.chr14                C 0 C 0
s papAnu2.AHZZ01138950             7963 78 +     13741 aaacaaaaaaacaaagatagaatCTAACCTCTTGGTAAATACATTCACTATTAGGGTTTTTATAACAGAGAAGTCATT
i papAnu2.AHZZ01138950         C 0 N 0
s chlSab2.chr1                 81231950 74 + 126035930 AAACAAAAAAACAA----AGAATCTAACCTCTTGGTAAATACATTCACTATTAGGGTTTTTATAACAGAGAAGTCATT
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60137050 479 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=53512.000000
s hg38.chr14_KI270725v1_random    64879 69 +    172810 CTTTATTAACACTCTTTTGACTATTAAAATATTTTGACATCAAAAATCTGCAAAATATGAAGAAACAAG
s panTro4.chrUn_GL393527         142979 69 +    341619 CTTTATTAACACTCTTTTGACTATGAAAATATTTTGACATCAAAAATCTGCAAAATATGAAGAAACAAA
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90060542 67 + 135538710 CTTTATTAATACTC--TTGACTATGAAAATATTTCGACATCAAAAATCTGCAAAATATAAATAAACAAG
i rheMac3.chr14                C 0 I 290
s papAnu2.chr14                79839792 67 + 123829720 ccttATTAATACTC--TTGACTATGAAAATATTTCGACATCAAAAAtctgcaaaatataaataaacaag
i papAnu2.chr14                N 0 I 8
s chlSab2.chr1                 81232024 67 + 126035930 CTTTATTAATACTC--TTGACTATGAAAATATTTCGACATCAAAAATCTGGAAAATATAAATAAACAAG
i chlSab2.chr1                 C 0 I 8
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60137050 479 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=21820.000000
s hg38.chr14_KI270725v1_random    64948 72 +    172810 GGACACACAGCTTTTTCTATtttctatttttattttatttttatttttttgagaaggagtctctttctgtca
s panTro4.chrUn_GL393527         143048 72 +    341619 GGACACACAGCTTTTTCTATtttttatttttattttatttttatttttttgagaaggagtctctttctgtca
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79839867 58 + 123829720 ggacacacaact--------------ttttttttttttttttttttttttgagactgagtcttgctctgtca
i papAnu2.chr14                I 8 C 0
s chlSab2.chr1                 81232099 57 + 126035930 GGACACACAAC---------------tttttttttatttttattttttttgagactgagtcttgctctgtca
i chlSab2.chr1                 I 8 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e otoGar3.GL873520             60137050 479 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=1815.000000
s hg38.chr14_KI270725v1_random    65020 4 +    172810 caca
s panTro4.chrUn_GL393527         143120 4 +    341619 ccca
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79839925 4 + 123829720 tgca
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232156 4 + 126035930 tgca
i chlSab2.chr1                 C 0 C 0
s nasLar1.chrUn_JMHX01041124v1     1766 4 +      1772 TGCA
i nasLar1.chrUn_JMHX01041124v1 N 0 N 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e otoGar3.GL873520             60137050 479 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=75509.000000
s hg38.chr14_KI270725v1_random    65024 163 +    172810 ggctagagtgcagtggtgcgatcttagctcacttcaagctg-tgcctccc-agttcacgccattctcctgcctcagtctcccgagtagctgggactacaggcgcccgccaccaagcccagctaattttttgtatttttagtagagacggggtttcacc--gttagcc
s panTro4.chrUn_GL393527         143124 163 +    341619 ggctggaatgcagtggtgcgatcttagctcactgcaagctg-cgcctccc-ggttcacgccattctcctgcctcagtctcccgaatagctgggactacaggcgcccgccaccaatcccggctaattttttctatttttagtagagaaagggtttcacc--gttagcc
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79839929 167 + 123829720 cgctggagtgcagtggcacgatcttggctcactgcaagcttccgcctcccaggttcacgccattctcctgcctcagactcccgagtagctgggactacaggcgccagcctccacgcccgactaattttttgtatttttaatagagacggggtttcaccatgttagcc
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232160 167 + 126035930 cgctggagtgcagtggcacgatcttggctcgctgcaagcttccgcctcccaggttcacgccattctcctgcctcagactcccgagtagctgggactacaggcgccggcctccacgcccggctaatttttcgtatttttagtagagacggggtttcaccatgttagcc
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e otoGar3.GL873520             60137050 479 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=1542.000000
s hg38.chr14_KI270725v1_random    65187 6 +    172810 --aggatg
s panTro4.chrUn_GL393527         143287 6 +    341619 --aggatg
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840096 6 + 123829720 --aggatg
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232327 6 + 126035930 --aggatg
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60137529 6 -  73491278 tcagtg--
i otoGar3.GL873520             I 479 I 19
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=1504.000000
s hg38.chr14_KI270725v1_random    65193  7 +    172810 g--------tctcaa
s panTro4.chrUn_GL393527         143293  7 +    341619 g--------tctcaa
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840102 15 + 123829720 gccagatggtctcga
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232333 15 + 126035930 gccagatgttctcga
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e otoGar3.GL873520             60137535 19 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=-778.000000
s hg38.chr14_KI270725v1_random    65200 4 +    172810 tc-cc--
s panTro4.chrUn_GL393527         143300 5 +    341619 tctcc--
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840117 4 + 123829720 tc-tc--
i papAnu2.chr14                C 0 I 1
s chlSab2.chr1                 81232348 4 + 126035930 tc-cc--
i chlSab2.chr1                 C 0 I 275
s otoGar3.GL873520             60137554 4 -  73491278 ---ccac
i otoGar3.GL873520             I 19 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=1910.000000
s hg38.chr14_KI270725v1_random    65204 2 +    172810 tg
s panTro4.chrUn_GL393527         143305 2 +    341619 tg
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840122 2 + 123829720 tg
i papAnu2.chr14                I 1 C 0
s chlSab2.chr1                 81232627 2 + 126035930 tg
i chlSab2.chr1                 I 275 C 0
s otoGar3.GL873520             60137558 2 -  73491278 tg
i otoGar3.GL873520             C 0 I 22
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=12274.000000
s hg38.chr14_KI270725v1_random    65206 23 +    172810 acctcgtgatctgcccgcctcgg
s panTro4.chrUn_GL393527         143307 23 +    341619 acctcgtgatctgcccgcctcgg
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840124 23 + 123829720 acctcgtgatctgcccgcttcgg
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232629 23 + 126035930 acctcgtgagctgcccgcttcgg
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e otoGar3.GL873520             60137560 22 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=1476.000000
s hg38.chr14_KI270725v1_random    65229 2 +    172810 cc
s panTro4.chrUn_GL393527         143330 2 +    341619 cc
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840147 2 + 123829720 cc
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232652 2 + 126035930 cc
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60137582 2 -  73491278 CT
i otoGar3.GL873520             I 22 I 40
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=1692.000000
s hg38.chr14_KI270725v1_random    65231 3 +    172810 tct
s panTro4.chrUn_GL393527         143332 3 +    341619 tct
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840149 3 + 123829720 tct
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232654 3 + 126035930 tct
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e otoGar3.GL873520             60137584 40 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=4730.000000
s hg38.chr14_KI270725v1_random    65234 5 +    172810 caaag
s panTro4.chrUn_GL393527         143335 5 +    341619 caaag
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840152 5 + 123829720 caaag
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232657 5 + 126035930 caaag
i chlSab2.chr1                 C 0 C 0
s otoGar3.GL873520             60137624 5 -  73491278 caaag
i otoGar3.GL873520             I 40 I 1838
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=2292.000000
s hg38.chr14_KI270725v1_random    65239 4 +    172810 tgct
s panTro4.chrUn_GL393527         143340 4 +    341619 tgct
i panTro4.chrUn_GL393527       C 0 C 0
s papAnu2.chr14                79840157 4 + 123829720 tgct
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232662 4 + 126035930 tgct
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90060609 290 + 135538710 I
e otoGar3.GL873520             60137629 1838 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=944610.000000
s hg38.chr14_KI270725v1_random    65243 1133 +    172810 gggattacaggcgtgagccaccgcccccggccCCAGGACACACAGCTTTAAAATTTCTCATTGGTCTCACCCAGTGCCAACCACCTAAAACCTCTCATTTTCCCCCAGACATTTCTTCTGCCTCCAGGATGGAGGTAGAGAATCTTGGCCTTGGGCCACGCACTGGGGACCATGCTAGGCTGCCGTGGTCAGTGACAGACTCAGGTTCTCACCAGCATCCCCAAAATAGGCCCCT--GAAAAAAATGTTA-CCATCAGGGTGCGCTCCCTGATTCTTGTGTCTGCTGGAAGGAGGAAATCAAGCCAGGAACGTTGTCAGGATAGAGATGAAAATGGGGCTCACTTTTCTGTCTCTTGTGATGTCAGACAAGCCTTTCAGCTCTGTCTCCTCAGCCCTCATGGAATCGTTTGGTGTGGACGCACCGAGATTCTGAACTGGGTctcctttccctctgcccttctctggggccagattctgagctctccattccaatttttcccccaatttgcccttgcgtttatttatctggattactgtctgcctgtcccaaagaataaaagctttatcacagtgggaactttgtttaaaaaaataataataacagctatatttttaggatccatgacactgtccagcatatcggtggtatctgataaaaaatgtttgttgactgaatg----aaCAAATATATTATTCACAAT-TCACATTATCCTGAACTGGCTAGAAAATTAAATATCTGATATCAGTATTGGCAGCATTATGAAGTAAATATAATTCTGACACAGTGCTCGTGAAAGTCTAATATGAAATGCTCATTTTAGAAAACATTTTCTTGTAGATTTGAAAATGTTTCATCTCCATGAACTAGTTGTATATCTGCAAGTTGCGTTTCTTTGGGTtaggcagaataattg-ctccccaccaaagacagccacatcccagtcttcagataaggtgaacatgctaaagtaagttagcatgttcaaagggacttggcagatgtgattaccattaagggcattgaaatggggaaattaccttgaattaccttggtgagtccaatctaatctcataattccttgagagcagagaatattttctggatgctgagattcagacagatgacagtatgagaaag
s panTro4.chrUn_GL393527         143344 1132 +    341619 gggattacaggcatgagccaccgcccctggccCCAGGACACACAGCTTTAAAATTTCTTCTTGGTCTCACCCAGTGCCAACCACCTAAAACCTCTCATTTTCCCCCAGACATTTCTTCTGCCTCCAGGATGGAGGTAGAGAATCTTGGCCTTGGGCCACGCACTGGGGACCATGCTGGGCTGCCGTGGTCAGTGACAGACTCAGGTTCTCACCAGGATCCCCAAAATAGGCCCCT--GAAAAAAATGTTA-CCATCAGGGTGCGCTCCCTGATTCTTGTGTCTGCTGGAAGGAGGAAATCAAGCCAGGAACATTGTCAGGATAGAGATGAAAATGGGGCTCGCTTTTCTGTCTCTTGTGATGTCAGACAAGCCTTTCAGCTCTGTCTCCTCAGCCCTCATGGAATTGTTTGGTGTGGACGCACTGAGATTCTGAACTGGGTCCCCTTTccctctgcccttctctggggccagattctgagctctccattccaatttttcccctaatttgcccttgcatttatgtatctggattactgtctgcctgtcgcaaagaataaaagctttatcacagtggggattttgttt-aaaaaataataataacagctatatttttaggaaccatgacactgtccagcatatcggtggtgtctgataagaaatgtttgttgactgaatg----aaCAAATATATTATTCAGAAT-TCACATTATCCTGAACTGGCTTGAAAATTAAATACCTGATATCAGTATTGGCAACATTATGAAGTAAATATAATTCTGATACAGTGCTCGTGAAATTCTAATATGAAATGCTCATTTTAGAAAACATTTTCTTGTAGATTTGAAAATGATTCATCTCCATGAACTAGTTGTATATCTGCAAGTTGTGTATCTTTGGGTtaggcagaataattgcccccccaccaaagacagccacatcccagtcttcagataaggtgaacatgctaacgtaagttagcgtgttcaaagggacttggcagatgtgattaccattaagggcattgaaatggggaaattaccatgaattaccttggtgag-ccaatgtaatctcataatttcttgagagcagagaatattttctggatgctgagattcagacagatggcagtatgagaaag
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90060899 1129 + 135538710 gggattacaggcgtgagccaccgcgcccggccCCAGGACACACAGCTTTAAAAGCTCTCCTTGGTCTCACCCAGTGCCAACCACCTAAAACCTCTCATTTTCCCCCAGTCATTTCTTCTGCCTCCAGGATAGAGGCACAGACTCTCGGCCTTGGGTCACGCACTGAGGACCATGCTGGGCTACCGTGGTCAGCAATGGACTCAGGTTCTCACCAGGAGCCCCAAGATAGGCTCCTT-AAAAGAAATGTTACCCATCAGGTTGCACTTCCTGATTCTTGTCTCTGCTGGAAGGAGGAAATCAAGCCAGGAACATTGTCAGGAGAGAGATGAAAATGGGGCTCAGGTTTCTGTCTCTTGTGATGTCAGACAAGCCTTTCAGCTCCTTCTCCTCAGCCCTCATGGAATTGTTTGGTGTGCACGCATCGAGATTCTGAACTGGGTCCCCActctctctgcccttctctggtgccagatcctgaactctccaatctaatttttcccccaatttgcccttgcatttatttatctggattactgtctgcctgtcccaaagaatgaaagctttatcacagcagggactttgttt-aaaaaataataataacggttatatttttaggatccatgacactgtccagcatattggtgatatctgataaaaaatgtttgttgaatgaatg----aaCAAATATATTATTCACAATGTCACATTATCCTGAACTGACTAGAAAATTAAGTATCTGATGTCAGTATTGATGACATTATGAAGTAAATATAATTCTGATACAGTGCTGGTGAAAATCTAATAAGAGATGCTCATTTTAAAAAACATTTTCTTGTAGATTTGAAAATGTTTAATCTCCATGAACTAGTTGTATATCTGCAAGTTGTGTATCTTtgggttaggcagaataattg-gcccccaccaaagacagttacatcccagtcttcagatacggtgaacatgctaactta------catgctaaaagggactttgcagatgtgattaccatcaacggcattgaaatggggaaattaccttgaattatcttggtgagtccaatttaatctcataattccatgagagcagagaatattttctggatgcagagattcagacagatggcagtatgagaaag
i rheMac3.chr14                I 290 C 0
s papAnu2.chr14                79840161 1129 + 123829720 gggattacaggcgtgagccaccgcgcccagccccaggaCACACAGCTTTAAAAGCTCTCCTTGGTCTCACCCAGTGCCAACCACCTAAAACCTCTCATTTTCCCCCAGTCATTTCTTCTGCCTCCAGGATAGAGGCACAGACTCTCGGCCTTGGGTCACGCACTGAGGACCATGCTGGGCTACCGTGGTCAGCAATGGACTCAGGTTCTCACCAGGAGCCCCAAGATAGGCTCCTT-AAAAGAAATGTTACCCATCAGGTTGCACTTCCTGATTCTTGTCTCTGCTGGAAGGAGGAAATCAAGCCAGGAACATTGTCAGGAGAGAGATGAAAATGGGGCTCAGGTTTCTGTCTCTTGTGATGTCAGACAAGCCTTTCAGCTCCTTCTCCTCAGCCCTCACGGAATTGTTTGGTGTGCACGCATCGAGATTCTGAACTGGGTCCCCACTCTCTCTGCCCTTCTCTGGTGCCAGATCCTGAACTCTCCAATCTAATTTTTCCCCCAATTTGCCCTTGCATTTATTTATCTGGATTATTGTCTGCCTGTCCCAAAGAATGAAAGCTTTATCACAGCAgggactttgttt-aaaaaataataataatggttataTTTTTAGGATCCATGACACTGTCCAGCATATTGGTGATATCTGAtaaaaaatgtttgtggaatgaatg----aacaaatatattATTCACAATGTCACATTATCCTGAACTGACTAGAAAATTAAGTATCTGATGTCAGTATTGATGACATTATGAAGTAAATATAATTCTGATACAGTGCTGGTGAAAATCTAATAAGAgatgctgattttaaaaaacattttcttgtagatttgaaaatgtttaatctCCATGAACTAGTTGTATATCTGCAAGTTGTGTATCTTTGGGTTAGGCAGAATAATTG-GCCCCCACCAAAGACAGCTACATCCCAGTCTTCAGATACGGTGAACATGCTAACTTA------CATGctaaaagggactttgcagatgtgattaccATTAACGGCATTGAAATGGGGAAATTACCTTGAATTATCTTGGTGAGTCCAATTTAATCTCATAATTCCATGAGAGCAGAGAATATTTTCTGGATGCAGAGATTCAGACAGATGGCAGTATGAGAAAG
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81232666 1134 + 126035930 gggattacaggcgtgagccaccgcgcccagccCCAGGACACACAGCTTTAAAAGCTCTCCTTGGTCTCACCCAGTGCCAACCACCTAAAACCTCTCATTTTCCCCGAGTCATTTCTTCTGCCTCCAGGATGGAGGTACAGACTCTCGGCCTTGGGTCACGCACTGAGGACCACGCTGGGCTACTGTGGTCAGCGATGGACTCAGGTTCTCACCAGGAGCCCCAAGATAGGCTCCTGAAAAAAAAATGGTACCCATCAGGTTGCGCTTCCTGATTCTTGTCTCTGCTGGAAAGAGGAAATCAAGCCAGGAACATTGTCAGGAGAGAGATGAAAATGGGGCTCAGGTTTCTGTCTCTTGTGATGTCAGACAAGCCTTTCAGCTCCTTCTCCTCAGCCCTCATGGAATTGTTTGGTGTGCACGCATCGAGATTCTGAACTGGGTCCCCActctctctgcccttctctggggccagatcctgaactctccaatctaatttttcccccaatttgcccttgcatttatttatctggattactgtctgcctgtcccaaagaatgaaagctttatcatagcagggactttgttt-aaaaaataataataacggttatatttttaggatccatgacactgtccagcatattggtgatatctgataaaaaatgtttgttgaatgaatgaaCAAACAAATATATTATTCACAATGTCACATTATCCTGAACTGACTAGAAAATTAAGTATCTGATGTCAGTATTGACAACATTATGAAGTAAATATAATTCTGATACAGTGCTGGTGAAAATCTAATAAGAGATGCTCATTTTAAAAAACATTTTCTTGTATATTTGATAATGTTTAATCTCCATGAACTAGTTGTATATCTGCAAGTTGTGTATCTTtgggttaggcagaataattg-ccccccaccaaagacagttacatcccagtcttcagatacggtgaacatgctaactta------catgctaaaagggactttgcagatgtgattaccattaacggcattgaaatggggaaattaccctgaattatcttggtgagtccaatttaatctcataattccttgagagcagagaatattttctggttgcagagattcagacacatggcagtatgagaaAG
i chlSab2.chr1                 C 0 I 403
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60137629 1838 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762  232 +  72422247 I

a score=60807.000000
s hg38.chr14_KI270725v1_random    66376 119 +    172810 atgtggcctgctattactggcttttaaaacagtggtagggggccacaagccaaggaaagccagtgacctttagaagctgggaatgacccaaagttttcaaccaggaag-aaactgaggat
s panTro4.chrUn_GL393527         144476 119 +    341619 atgtggcctgctattactggcttttaaaacagtggtagggggctacaagccaaggaaagccagtgaactttagaagctgggaatgacccaaagtttacaaccaggaag-aaactgaggat
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90062028 120 + 135538710 atgtggcctgctattactggcttttaaaacagtggaagggggccacaatccaaggaaagccagtgacctttagaagctgggaatgacccgaagtttacaaccagaaagaaaaccgaggat
i rheMac3.chr14                C 0 I 7
s papAnu2.chr14                79841290 120 + 123829720 ATGTGGCCTGCTATTACTGGCTTTTAAAACAGTGGAAGGGGGCCACAATCCAAGGAAAGCCAGTGACCTTTAGAAGCTGGGAATGACCCAAAGTTTAcaaccagaaagaaaatcaaggat
i papAnu2.chr14                C 0 I 7
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60137629 1838 -  73491278 I
e chlSab2.chr1                 81233800 403 + 126035930 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=256084.000000
s hg38.chr14_KI270725v1_random    66495 298 +    172810 ctacaaccacaaggaactgaattctgccaacaacccagatgctcttttagagccttcagaaagaaatgcagcctgccaacatcttgatgttagttcagtgagagccatgccagatttccaaccaaaacaattctaagac---aagtttatgtgtgttttttaaaactgactcaaatcttacaaaaatgtgtacttttaagccactgaatttgtggtaagttattacagcaggaatagaaaactaatacaACCCTAGAGAAAGTCTTGTACATGTGCTCTATAAACACACAGCAGAATTTTT
s panTro4.chrUn_GL393527         144595 301 +    341619 ctacaaccacaaggaactgaattctgccaacaacccagatgctcttttagagccttcagaaaaaaatgcagcctgccaacatcttgatgttagttcagtgagagccatgccagatttccaaccaaaacaattctaagacaataagtttgtgtgtgttttttaaaactgactcaaatcttacaaaaatgtgttcttttaagccactgaatttgtggtaaatcattacagcaggaatagaaaactgatacaACCCTAGAGAAAGTCTTGTACATGTGCCCTATAAACACACAGCAGAATTTTT
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90062155 301 + 135538710 ctacaaccacaaggaactgaattctgccaacaacccagattctctcttagagccttcagaaagaaatgcagcctgccaacatcttgatgttagttcagtgaaagccataccagacttccaaccaaaacaactccaagataataagtttgtgtgtgttttttaaaacagactcaaatcttaaaacaatgtgttcttttaagccaataagtttgtggtaaattgctataccaggaatagaaaactgatacaACCCTAGAGAAAGTCTTGTACATGTGCCCTATAAACACACAGCAGaattttt
i rheMac3.chr14                I 7 C 0
s papAnu2.chr14                79841417 301 + 123829720 ctacaaccacaaggaactgaattctgccaacaacccaGATTCTCTCTTAGAGCCTTCAGAAAGAAATGCagcctgccaacatcttgatgtTAGTTCAGTGAAAGCCATACCAGACTTCCAACCAAAACAACTCTAAGATAGtaagtttgtgtgtgttttttaaaacagactcaaatcttaaaaaaatgtgttcttttaagCCAATAAGTTTGTGGTAaattgttatagcagcaatagaaaactgataCAACCCTAGAGAAAGTCTTATACATGTGCCCTATAAACACAgaacagaattttt
i papAnu2.chr14                I 7 C 0
s chlSab2.chr1                 81234203 301 + 126035930 ctacaaccacaaggaactgaattctgccaacaacccagattctctcttagagccttcagaaagaaatgcagcctgccaacatcttgatgttagttcagtgaaagccgtaccagacttccaaccaaaacaactccaagatagtaagtttgtgtgtgttttttaaaacagactcaaatcttaaaaaaatgtgttcttttaagccaataagtttgtggtaaattgctatagcaggaataaaaaactgatacaACCCTAGAGAAAGTCTTGTACATGTGTCCTATAAACACACAGCAGAATTTTT
i chlSab2.chr1                 I 403 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60137629 1838 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=6223.000000
s hg38.chr14_KI270725v1_random    66793 16 +    172810 TT--AACTTTTT---ATTGAG
s panTro4.chrUn_GL393527         144896 18 +    341619 TTTAAACTTTTT---ATTGAG
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90062456 15 + 135538710 t---aatttttt---attgag
i rheMac3.chr14                C 0 C 0
s papAnu2.chr14                79841718 15 + 123829720 t---tatttttt---attgag
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81234504 15 + 126035930 T---AATTTTTT---ATTGAG
i chlSab2.chr1                 C 0 I 36
s otoGar3.GL873520             60139467 16 -  73491278 -----atgttagcaaatttag
i otoGar3.GL873520             I 1838 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=2549.000000
s hg38.chr14_KI270725v1_random    66809 16 +    172810 TTAAAAAATATATGTA--
s panTro4.chrUn_GL393527         144914 16 +    341619 TTAAAAAATACATATA--
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90062471 16 + 135538710 attttatatatatata--
i rheMac3.chr14                C 0 I 3
s papAnu2.chr14                79841733 16 + 123829720 attatatatatatata--
i papAnu2.chr14                C 0 I 10
s otoGar3.GL873520             60139483 16 -  73491278 --tatagaaaaataaact
i otoGar3.GL873520             C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e chlSab2.chr1                 81234519 36 + 126035930 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=13786.000000
s hg38.chr14_KI270725v1_random    66825 15 +    172810 TAATTTACCATCTGT
s panTro4.chrUn_GL393527         144930 15 +    341619 TAATTTACCATCTGT
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90062490 14 + 135538710 -aatttaCCATCTGT
i rheMac3.chr14                I 3 C 0
s papAnu2.chr14                79841759 15 + 123829720 aaatttaccatctgt
i papAnu2.chr14                I 10 C 0
s chlSab2.chr1                 81234555 15 + 126035930 taATTTACCTTCTGT
i chlSab2.chr1                 I 36 C 0
s otoGar3.GL873520             60139499 15 -  73491278 gggctcagcacctgt
i otoGar3.GL873520             C 0 I 31264
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=152994.000000
s hg38.chr14_KI270725v1_random    66840 180 +    172810 ACATTTTTAGAGGACAGTTTAGTGGTGATAAATACATTTATATTTTcttctcttaatctcctcttccaactccccttgctggcctctagcaaccaccaatttactttctatcttcatgagattcacttttttactgcccacatatgagtgacaacatgtgatatttgcctttctgtgctt
s panTro4.chrUn_GL393527         144945 180 +    341619 ATATTTTTAGAGGACAGTTTAGTGGTGATAAATATATTTATATTTTcttctcttaatctcctcttcccactccccttgctgacctctagcaaccaccgatttactttctatcttgatgagatccagttttttactgcccacatatgagtgacaacatgtggtatttgcctttctgtgctt
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90062504 180 + 135538710 ACATTTTTAGAGGACAGTTTAGTGGTGATAAATACATTTAAATTTGcttctcttcgtctcgtcttcccactccccttgctggcctctagcaaccaccaatttactttctatcttcatgagatccacttttttaccacccacatatgagtgacaacatgcgatatttgcttttctgtgctt
i rheMac3.chr14                C 0 C 0
s papAnu2.chr14                79841774 180 + 123829720 ACATTTTTAGAGGACAGTTTAGTGgtgataaatacatttaaatttgctTCTCTTCGTCTCGTCTTCCCACTCCCCTTGCTGGCATCTAGCAACCGCCAATTTACtttctatcttcatgagatccactttttaaccacccacatatgagtgacaacatgcgatatttgcctttctgtgctt
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81234570 180 + 126035930 ACATTTTTAGAGGACAGCTTAGTGGTGATAAATACATTTAAATTTGcttctcttcatctcgtcttcccactccccttgctggcctctagcaaccaccaatttactttctatcttcatgagatccacttttttaccacccacatatgagtgacaacatgcgatatttgcctttctgtgctt
i chlSab2.chr1                 C 0 I 1395
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=359421.000000
s hg38.chr14_KI270725v1_random    67020 730 +    172810 ggctcattccacttaacataatggcctctgttcattacgttaagccaaatggccagcgccacctatgttgctgtgaatgacagaatttcattcttctttgtatctgagtagtattccattatgtatatatatgacttttaaaatctattcatttgttgatgagcacttacgttgattccatattttgtctattgtgaatagtgctgcagtacacatcggcatgtagatatgtctttgatacattaatttcctttattttggatatatatccagtaaagaaattgctgggccacatggtagttctatttttacttttttgaggaacctccatactgttctccatagtggctttattaatgtagattcccactaacagtgtactagtatttccctttctccacatccttgccagcatctgttattgcctgtctttttgaaacaagtcatttcaaccaaggtgagatgatattgcattgtgattttgatttgcatttctttgacgattagtgatattgaacattttttcatcttcctattggccatttgtatgtcttcttttgagaaaatatctgttcagatctttagccca--tttttaaattgtatttatt------tatatatttttaactattAtttttttagaagcaaggtcttgctttgtcacccaagctaaagggcagtagcataatcatagctcactgtaacctcaaac-tcctgggattaagaaatcctcctg
s panTro4.chrUn_GL393527         145125 729 +    341619 ggctcattccacttaacataatggcctatgttcattacgttaagccaaatggccagcgccacctatgttgctgcgaatgacagaatttcattcttctttgtatctgagtagtattccattatgtgtatatatgacttttaaaatctattcatttgttggtgagcacttacagtgattccatattttgtctattgtgaatagtgctgcagtacacatcggcatgtagatatgtctttgatacattaatttcctttattttggatatatatccagtaaagaaattgctggaccacatggtagttctatttttacttttttgaggaacctccatactgttctccatagtggctttattaatgtagattcccaccaacagtgtactagtatttccctttctccacatccttgccagcatctgttattgcctgtctttttgaaacaagtcatttcaaccaaggtgagatgatattgcattgtgattttgatttgcatttctttgacgattagtgatattgaacattttttcatcttcctattggccatttgtat-tcttcttttgagaaaatatctgttcagatattttgccca--ttttaaaattgtatttatt------tatatattcttaaCTATTAtttttttagaagcaaggtcttgttttgtcacccaagctaaagggcagtagcataatcatagctcactgtaacctcaaac-tcctgggattaagaaatcctcctc
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90062684 730 + 135538710 ggctcattccacgtaacataatgggctatgttgattacattaagcgaaatggccagcgccacctatgttgctacaaatgacagaatttcattcttctttttatctgagtagtattccattatgtatatatatgacttttaaaatatattcatttgttgatgagcacttatattgattccatattttggccattatgaatagtgctgcaataaacgtgggcatgtagagatgtcttttatatattgatttcctttattttggacatatatccagtagtgaaatagctggaccacatggtagttctatttttacatctttgaggaacctccatactgttctccatagtggctttattaacgtagattcccaccaatggtgtactagtgttccccgttctccacatccttgccagcatctgttattgcctgtctttttgatataagtcatttcaaccaaggtgagatgatactgcattgtggttttgatttgcatttctctgatgattagtgatattgaacattttttcatcttcctattggccatttgtaggtcttcttttgag-aaatatctgttcagatcttttgcccattttttaaaattgtatttatt------tatatatttttaaC-TAtttttttttagaagcaagatcttgctctgtcatccaggctaaaggacagtggcataatcatagctcactgtaaccttaaac-tcctgggattaagaaatcctcctg
i rheMac3.chr14                C 0 I 293
s papAnu2.chr14                79841954 736 + 123829720 gGCTCATTCCACATAACATAATGGCCTATGttcattacattaagtgaaatggCCAGCGCCACctatgttgctacaaatgacagaatttcattcttctttgtatctgagtagtattccattatgtatatatatgacttttaaaatatattcatttgttgatgagcacttacattgattccatattttggctattatgaatagtgctgcaataaacatgggcaTGTAGAGATGtcttttatatattgatttcctttattttggacATCTATTCAGTAGTGAAATAGCTGGaccacatggtagttctatttttacttttttaaggaacctccatactgttctccatagtggctttATTAACGTAgattcccaccaacggtgtactAGTGTTCCCcgttctccacatccttgccagcatctgttattgcctgtctttttgatatgAGTCATTTCAACCAAGGTGAGATGAtactgcattgtggttttgatttgcatttctttgatgattagtgataccgaacattttttcat-ttcctattggccatttgtaggtcttcttttgag-aaatatctgttccgatcttttgcccattttttaaaattgtatttatttatatatatatatttttaac-attatttttttagaagcaagatcttgctctgtcacccaagctaaagggcagtggcataatcgtagctcactgtaaccttaaacaTCCTGGGAttaagaaatcctcctg
i papAnu2.chr14                C 0 I 279
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e chlSab2.chr1                 81234750 1395 + 126035930 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=20598.000000
s hg38.chr14_KI270725v1_random    67750 245 +    172810 accgggcgcggtggctcacgcctgtattcccagcactttgggaggccgaggcggacagatcacgaggttaggagatcaggaccatcctggctaacacggtgaaaccccgtctctactaaaaatacagtaaattagcctggcttggtgccgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaacccctggggagcagagtctgcagtgagccgagatcgtgccact
s panTro4.chrUn_GL393527         145854 245 +    341619 accgggcgcggtggctcacgcctgtattcccagcacttcgggaggccgaggtgggcaggtcacgaggtcaggagatcgagaccatcctggctaacacggtgaaacccggtctctactaaaaatacaaaaaatcagccgggcttggtgccgggctcctgtagtcccagctactcaggaggctgagggaggagaatggcgtgaaccccgggtgagcagagcctgcagtgagccgagatcgcgccact
i panTro4.chrUn_GL393527       C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90063414 293 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e chlSab2.chr1                 81234750 1395 + 126035930 I
e papAnu2.chr14                79842690 279 + 123829720 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2076762 232 +  72422247 I

a score=138527.000000
s hg38.chr14_KI270725v1_random    67995 594 +    172810 gcactccagcctggacgacagcgagactccatctc---aaaaaaaaaaaaaaaaa---aaatcctcctacctcagcctcttcagtagcccatttttcaatcagattttttgtt----tattattgagttgtttgagctccttatatattctacttgttaatcctttatcagatagatagtttgaaaatattttgtcccagtctgtggttggctcttcgctttgttgattgattcctttgcttgaggctttttagtttgatataatcccattgtctatttttgcttctgttgcctgtgcttccgaggtcttacgcaaaaaaatctttgcccagactaatgtcctggagcatttctcctatgctttcttttttcttttttcttttttt-tt---------------------------------------------------------------------------------------ttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccatcatgccccgctaa----tttttttttttttttttttgtatttttagtagagacggagtttcaccgtgttagccaggatggtcctgatctcctaacctcgtgatctgtccgcctcggcctcccaaagtgctgggaatacaggcgtgagccaccacgcctggcc
s panTro4.chrUn_GL393527         146099 596 +    341619 gcactccagcctgggcgacagcgagactccatctcaaaaaaaaaaaaaaaaaaaa---aaatcctcctacctcagcctcttcagtagcccatttttcaatcagattttttgtttgtgtattattgagttgtttgagctccttatatattctacttgttaatcctttatcagatagatagtttggaaatattttgtcccattctgtggttggctcttcactttgttgattgtttcctttgcttgaggctttttagtttgatataatcccattgtctatttttgattttgttgcctgtgcttccaaggtcttacgcaaaaaaatctttgcccagactaatgtcctggatcatttctcctatgctttcttttt--ttctttctttttttgtt---------------------------------------------------------------------------------------ttcacaccattctcctgactcagcctcctgagtagctgggactacaggcacccaccatcatgccccgctaa--------tattttcttttttttgtatttttagtagagatggagtttcaccgtgttagccagggtggtctcgatctcctgaccttgtgatctggccgccttggcctcccaaagtgctgagattacagacgagagccaccgcgcccagcc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2076994 690 +  72422247 gcactccagcctacac-acagagagactccgtctcaaaaaaaaaaaaaaaaaaaaaggaaaTCCTCCTACCTCAGCCTCTTCAGTAgcccatttt----tcagattttttgtttgtttattattgagttgtttgagccccttatgtattctacttgttaatcctttatcagatagatagtttgaaaatattttgtcccattctatggttggctcttcactttgttgattgtttcctttgcttgaggctttttagtttgatataatcccattgtctatttttgcttttgttgcctgtgcttccgaggtcttaagcaaaaaaatctttgcccagaccaatgtcctggagcatttctcttatgctttcttttttcctttttcttttttt-tttttttttttgagatggagtctgactctgtcgcccaggctggagtgcagtggcatgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccacgccccgctaatttttttttttttttttttttttgtatttttagtagagatggagtttcaccgtgttagccagggtggtctcgatcttctgacctcgtgatccgcccgccttggcctcccaaagtgctgagattacagacgtgagccaccgcgcccggcc
i ponAbe2.chrUn                I 232 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90063414 293 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e chlSab2.chr1                 81234750 1395 + 126035930 I
e papAnu2.chr14                79842690 279 + 123829720 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=5035.000000
s hg38.chr14_KI270725v1_random    68589 19 +    172810 tttcctatgcttttttatt
s panTro4.chrUn_GL393527         146695 17 +    341619 tttcctatgcttttt--tt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2077684 17 +  72422247 tctcctatgcttttt--tt
i ponAbe2.chrUn                C 0 C 0
s papAnu2.chr14                79842969 16 + 123829720 TCTCGTATGCTTTCT--T-
i papAnu2.chr14                I 279 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90063414 293 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e chlSab2.chr1                 81234750 1395 + 126035930 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=602651.000000
s hg38.chr14_KI270725v1_random    68608 497 +    172810 ttttactagcttcatagtttgaggtctcagattcaagtctttaatccatttttatttgatttgatttttgtgtatggtaagatgggtttaattttatccttctgcatacagttattcagttttcccaggatcatttattgaaaagactgttgttttcccagtgtatgttcttgatgcctttgtcagagatgagttgtgtgtaaatgtgtacatt--tgtctgcagtctctattctgttccactgtcctatgtgtctgtttttacgccagtaGAAATATATTGGCAATAATTAGTACAGAAAAGCTGAAACAATGAAATGACAAAAGTGATTTATACTGATATAATTCCTTATTCTCACTAAATGCAATAGCATACAGCTAGG-AAAACAATGTAGTGCACACGGTATTAAAATAGAACACAATTCAATATACACAGTGCTCACAGTGGCCATCGTTAGAGTGTT---gacggggatgcagtcagcaaaagttgtacaggtgac
s panTro4.chrUn_GL393527         146712 499 +    341619 tttcactagcttcacagtttcaggtctcagattcaagtctttaatccatttttatttcatttgatttttgtgtatggtaagatgggtttaattttatccttctacatatggttattcagttttcccaggatcatttattgaaaagactgttgttttcccagtgtatgttcttgatgcctttgtcagagatgagttgttagtaaatgtgtagatt--tgtctgcgatctctattctgttccactgtcctatgtgtctgtttttatgccagAAGAAATATATTGGCAATAATTAGTACAGAAAAGCTGAAACAATGAAATGACAAAAGTGAATTATACTGATATAATTCATTATGCTCACTAAATGCAATAGCATACATCTAGG-AAAACAATGTAGTGCACACGGTATTAAAATACAACACAATTCAATATA-ACAGTGCTCACAGTGGCCATCATTAGAGTGTTGAAGAAGGGGATGTAGTCAGCAAAAGTTGTACAGGTGAC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2077701 500 +  72422247 ttttactagcttcatagtttcaggtctcagactcaagtctttaatccatttttatttgatttgatttttgtgtatggtaagatgggtttaattttatccttctgcatatagttattcagttttcccaggatcatttatcgaaaagactgttcttttcccagtgtatgttcttgatgcctttgccagagatgagttgtttgtaaatgtgtagatt--tgtctgcaatctctattcggttccactgtcctatgtgtctgtttttttgccagtaGAAATATATTGGCAATAATTAGTACAGAAAAGCTGAAACAATGAAATGACAAAAATGAATTATACTGATATAATTCATTATGCTCACTAAATGCAATAGCATACAGCTAGG-ATAACAACGTAGTGCACACGATATTAAAATACAACACAATTCAATATACACAGTGCTCACAGTGGCCATCATTAGAGTGTTGAAGAAGGGGATGTAGTCAGCAAAAGTTGTACAGGTGAC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90063707 494 + 135538710 ttttagtaacttcatagtttcaggtcttagattcaagtctttaatccatctttatttgatttgatttttgtgtatggtaagaggggtttaattttatccatctgcata----tattcagttttcccaggatcatttattgaaaagactgtt-cttgaccagtgtatgttcttgatgcctttgtcagatataagtt----gtaaatgtgtagatttatgtctgtgatctctattctgttccattgtcctattcgtctgtttttatgccagtaGAAATACATTTGCAATAATTAGTACAGAAAAGCTGAAACAATGAAATGACAAAAGCGGATTATACTGATATAATTCATGATGCTCACTAAATGCAATAGCATACAGCTAGGAAAAACAATGTAGTGCACATAGTATTAAAATAAAACACAACTCAATACGCACAGTGCTCACAGTGGCCATCATTAGAGTGTTGAAGAAGGGGATGTAGTCAGCTAAAGTTGCACAGGTGAC
i rheMac3.chr14                I 293 C 0
s papAnu2.chr14                79842985 492 + 123829720 --TTAGTAacttcatagtttcaggtcttagattcaagtctttaatccatttttatttgatttgatttttgtgtatggtaagaGGGGTTTAATTTTATCCATCTGcata----tattcagttttcccaggatcatttattgaaaagactgtt-cttgaccagtgtatgttcttgatgCCTTTGTCAGATATAAGTT----GTAAATGTGTAGATTTATGTCTgtgatctctattctgttccattgtcctatgtgtctgtttttatgccagtagaAATACATTTGCAATAATTAGTACAGAAAAGCTGAAACAATGAAATGACAAAAGTGAATTATACTGATATAATTCATGATGCTCACTAAATGCAATAGCATACAGCTAGGAAAAACAATGTAGTGCACatagtattaaaataaaacacaactcaATACACACAGTGCTCACAGTGGCCATCATTAGAGTGTTGAAGAATGGGATGTAGTCAGCTAAAGTTGCACAGGTGAC
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81236145 498 + 126035930 ttttagtaacttcatagtttcaggtcttagattcaagtctttaatccatctttatttgatttgatttttgtgtatggtaagaggggtttaattttacccatctgcatatagttattcagttttcccaggatcatttattgaaaagactgtt-cttgactagtgtatgttcttgatgcctttgtcagagataagtt----gtaaatgtgtagatttatgtctgtgatctctattctgttccattgtcctatgtgtctgtttttatgccagtaGAAATACATTTGCAATAATTAGTGCAGAAAAGTTGAAACAATGAAATGACAAAAGTGAATTATACTGATATAATTCATGATGCTCACTAAATGCAATAGCATACAGCTAGGAAAAACAATGTAGTGCACACAGTATTGAAATAAAACACAACTCAATACACACAGTGCTCACAGTGGCCATCATTAGAGTGTTGAAGAAGGGGATATAGTCAGCTAAAGTTGTACAGGTGAC
i chlSab2.chr1                 I 1395 I 5
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=14884.000000
s hg38.chr14_KI270725v1_random    69105 17 +    172810 ttcaaaagtaatcataa
s panTro4.chrUn_GL393527         147211 17 +    341619 TTCAAAAGTAATAATAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2078201 17 +  72422247 TTCAAAAGTAATCATAA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90064201 17 + 135538710 TTCAAAAGTAATCATAA
i rheMac3.chr14                C 0 C 0
s papAnu2.chr14                79843477 17 + 123829720 TTCAAAAGTAATCATAA
i papAnu2.chr14                C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e chlSab2.chr1                 81236643  5 + 126035930 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=11619.000000
s hg38.chr14_KI270725v1_random    69122 9 +    172810 gcacttatg
s panTro4.chrUn_GL393527         147228 9 +    341619 GCACTTATG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2078218 9 +  72422247 GCACTTATG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90064218 9 + 135538710 GTACTTATG
i rheMac3.chr14                C 0 I 1
s papAnu2.chr14                79843494 9 + 123829720 GTACTTATG
i papAnu2.chr14                C 0 I 1
s chlSab2.chr1                 81236648 9 + 126035930 GTACTTATG
i chlSab2.chr1                 I 5 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=60828.000000
s hg38.chr14_KI270725v1_random    69131 123 +    172810 attacttttggcttaatttcttaaaccaagactggagacacaggtgttcattatgtgcttattatacatatacaataaatattttataaatatattgtttctatTCAGTATTTAATAAAGTAA
s panTro4.chrUn_GL393527         147237 123 +    341619 ATTACTTTTGGCTTAATTTCTTAAACCAAGACTGGAGACACAGGTGTTCATTATGTGCttattatatatataaaataaatattttataaatatattGTTTCTATTCAGTATTTAATAAAGTAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2078227 123 +  72422247 ATTACTTTTGGCTTAATTTCTTAAACCAAGACTGGAGACACAGGTGTTCATTATGTGCttattatgtatataaaataaatattttataaatatattGTTTCTATTCAGTATTTAATAAAGTAA
i ponAbe2.chrUn                C 0 C 0
s chlSab2.chr1                 81236657 119 + 126035930 ATTACTTTTGGCTTAATTTCTTAAACCAAGACCGGAGGTACAGGTGTTCATTATGTGCTTATTTTATATATAT----AATATTTTATAAGTATATTGTTTCTCTTCAGTATTTAATAAATTAA
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e rheMac3.chr14                90064227   1 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e papAnu2.chr14                79843503   1 + 123829720 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=72059.000000
s hg38.chr14_KI270725v1_random    69254 55 +    172810 ATCAATAGACAAGGTTAAAAATCAATGTACACATATTTCAAATATTTTTTGCTCC
s panTro4.chrUn_GL393527         147360 55 +    341619 ATCAATAGAAAAGGTTAAAAAGCAATGCACACATATTTCAAATATTTTTTGCTCC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2078350 55 +  72422247 ATCAATAGAAAAGGTTAAAAAGCAATGCACACATATTTCAAATATTTTTTGCTCC
i ponAbe2.chrUn                C 0 I 20
s rheMac3.chr14                90064228 55 + 135538710 ATCAATAGAAAAGGTTAAAAAGCAATGCGCACATATTTCAAATGTTTTTTGCTCC
i rheMac3.chr14                I 1 C 0
s papAnu2.chr14                79843504 55 + 123829720 ATCAATAGAAAAGGTTAAAAAGCAATGCAcacatatttcaaatgttttttgcTCC
i papAnu2.chr14                I 1 C 0
s chlSab2.chr1                 81236776 55 + 126035930 ATCAATAGAAAAGGTTGAAAAGCAATGCACACATATTTCAAATGTTTTTTGCTCC
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=46382.000000
s hg38.chr14_KI270725v1_random    69309 54 +    172810 AAGTTATATAAACATTGCATAGTTATTGCCCTGGgcctggcaaggtgactcaca
s panTro4.chrUn_GL393527         147415 54 +    341619 AAATTATATAAACATTGCATAGTTATTGCCCTGGgcctggcatggtgactcaca
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90064283 54 + 135538710 AAATTATATAAACATTGCATAGTTATTGCCCTGGgcctggcaaggtagctcaca
i rheMac3.chr14                C 0 C 0
s papAnu2.chr14                79843559 54 + 123829720 AAATTATATAAACATTGCACAGTTATTGCCCTGGGCCTGGCAAggtagctcaca
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81236831 54 + 126035930 AAATTACATAAACATTGCATAGTTATTGCCCTGGgcctggcaaggtagctgaca
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2078405 20 +  72422247 I

a score=172072.000000
s hg38.chr14_KI270725v1_random    69363 142 +    172810 cctctcatcctagcactttaggagactgaggcaggaggatagcttcagccccagaggtaaaggctgcagtgagccttaattgcactactgccctccagcctaggtgacagagcaagatgctgtctgaagataagaataaaaa
s panTro4.chrUn_GL393527         147469 142 +    341619 cctctcatcctagcactttaggagactgaggcaggaggatagcttcagccccagaggtcaaggctgcagtgagccttaattgcactactgcactccagcctaggtgacagagcaagatgctgtctgaagataaaaataaaaa
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90064337 141 + 135538710 cctctaatcctagcactttaggaggctgaggcaggaggatagcttcagccagagaggtcaaggctgaagggtgccgtaatctcactactgcactccagccta-gtgacagagcaagacgctgtctcaagataaaaataaaaa
i rheMac3.chr14                C 0 C 0
s macFas5.chr14                85834523 141 + 130733371 cctctaatcctagcactttaggaggctgaggcaggaggatagcttcagccagagaggtcaaggctgaagggtgccgtaatctcactactgcactccagccta-gtgacagagcaagatgctgtctcaagataaaaataaaaa
i macFas5.chr14                N 0 C 0
s papAnu2.chr14                79843613 141 + 123829720 cctctaatcctagcactttaggaggctgaggcaggaggatagcttcagccagagaggtcaaggctgaaggGTGCCGtaatcgcactactgcactccagccta-gtgacacagcaagacgctgtctcaagataaaaataaaaa
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81236885 141 + 126035930 cctctaatcctagcactttaggaggctgagggagggggatagcttcaggcagagaggtcaaggctcaagggtgccgtaatcgcactactgcactccagccta-gtgacagagcaagacgctgtctcaagataaaaataaaaa
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rhiRox1.KN297695v1              39369 5676 +    134106 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2078405  20 +  72422247 I

a score=2071.000000
s hg38.chr14_KI270725v1_random    69505 2 +    172810 ga
s panTro4.chrUn_GL393527         147611 2 +    341619 TA
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90064478 2 + 135538710 ta
i rheMac3.chr14                C 0 I 10
s macFas5.chr14                85834664 2 + 130733371 ta
i macFas5.chr14                C 0 I 10
s papAnu2.chr14                79843754 2 + 123829720 ta
i papAnu2.chr14                C 0 I 10
s chlSab2.chr1                 81237026 2 + 126035930 ta
i chlSab2.chr1                 C 0 I 14
s rhiRox1.KN297695v1              45045 1 +    134106 -a
i rhiRox1.KN297695v1           I 5676 N 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2078405 20 +  72422247 I

a score=110187.000000
s hg38.chr14_KI270725v1_random    69507 119 +    172810 aGTTGATAAATAAATATATGTTTATATATTAACTGATTTTATTAA-----------------------------------------------CtatatatatatatatatatatatatataGTTGTTGTCTTAGTCTATAGGCAATCTTACAGTGCTTAAGACTTT
s panTro4.chrUn_GL393527         147613 100 +    341619 AGt---taaataaatatatgtttatatattaactgattttattaa-----------------------------------------------c----------------tatatatatataGTTGTTGTCTTGGTCTATATGCAATCTTACAGTGCTTAAGACTTT
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chr14                90064490 150 + 135538710 aataaataaataaatgtatgtttatgtattaactgatttcattaataaataaataaataaatGTATGTTTATATATTAACTGATTTCATTAGC----------------TATATATATATAGTTGTTGTCTTGGTCTATAGTCAGTCTTACAGAGCTTAAGACATT
i rheMac3.chr14                I 10 C 0
s macFas5.chr14                85834676 103 + 130733371 Aataaataaataaatgtatgtttatatattaactgatttcattaa-----------------------------------------------c----------------tatatatatataGTTGTTGTCTTGGTCTATAGTCAGTCTTACAGTGCTTAAGACATT
i macFas5.chr14                I 10 C 0
s papAnu2.chr14                79843766 105 + 123829720 aataaataaataaatgtatgtttatatattaactgatttcattaa-----------------------------------------------c--------------tatatatatatatagttgttgtCTTGGTCTATAGTCAGTCTTACAGTGCTTAAGACATT
i papAnu2.chr14                I 10 C 0
s chlSab2.chr1                 81237042 109 + 126035930 aataaataaataaatgtatgtttatatattaactgattttattaa-----------------------------------------------c----------tctatatctatatatataGTTGTTGTCTTGGTCTATAGTCAATCTTACAGTGCTTAAGACATT
i chlSab2.chr1                 I 14 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I
e ponAbe2.chrUn                 2078405  20 +  72422247 I

a score=691011.000000
s hg38.chr14_KI270725v1_random    69626 381 +    172810 GATACTGAGAACAGATCTCCTAGGTATATGCTGTGTTTCTGGGGTGACATGATGCTCTCATCTGGCCTCCGTGAGCCTAATTCTATCTTACATTTACCCCACTCTTCAACAACAACTTGGGGAGGTGTCCCTAAACATTCCTAGGTAAACCCAAACCTGTGGCCCTCAACACATTTCTAGGTAAAGCAAGCTCCTGACA-TATCTGTGGATATCCTCTCATTGGAAGAAGGGGGAAGAGACCATCTCAAAATAATTCATTTAATATAGCTTTTCAGCATTAATTTTATTTTGAGAAAGAGACACACAGTAAATAAAATTTCTAAAAAACTATGAACTTTCAAGCATTCTCATGCTAAATCTAGCCCTGCTCACATGCCAGGG
s panTro4.chrUn_GL393527         147713 381 +    341619 GATACTGAGAACAGATCTCCTAGGTATATGCTGTGTTTCTTGGGTGACATGATGCTCTCATCTGGCCTCCGTGAGCCTAATTCTATCTTACATTTACCCCACTCTTCAACAACAACTTGGGGAGGTGTCCCTAAACATTCCTAGGTGAACCCAAACCTGTGGCCCTCAACACATTTCTAGGTAAAGCAAGCTCCTGACA-TATCTGTGGATATCCTCTCATTGGAAGAAGGGGGAAGAGACCATCTCAAAATAATTCATTTAATATAGCTTTTCAGCATTAATTTTATTTTGATAAAGAGACACACAGTAAATAAAATTTCTAAAAAGCTATAAACTTTCAAGCATTCTCACGCTAAATCTAGCCCTGCTCACATGCCAGGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2078425 381 +  72422247 GATACTGAGAACAGATCTCCTAGGTATATGCTGTGTTTCTGGGGTGACATGATGCTCTCATCTGGCCTCCGTGAGCCTAATTCTATCTTACATTTACCCCACTCTTCAACAACAACTTGGGGAGGTGTCCCTAAACATTCCTAGGTGAACCCAAACCTGTTGCCCTCACCACATTTCTAGGTAAAGCAAGCTCCTGACA-TATCTGTGGATATCCTCTCATTGGAAGAAGGGGGAAGAGACCATCTCAAAATAATTCATTTAATATGGCTTTTCAGCATTAATTTTATTTTGATAAAGAGACGCACAGTAAATAACATTTCTAAAAAACTATAAACTTTCAAGCATTCTCACGCTAAATCTAGCCCTGCTCACATGCCAGGG
i ponAbe2.chrUn                I 20 C 0
s rheMac3.chr14                90064640 381 + 135538710 GATACTGAGAACAGTTCTCCTAGGTATATGCTATGTCTCTGGGGTGACATGATGCTCTCATCTGGCCTCTGTGAGCTTAATTCTCTCTTACATTTACCCCACTCTTCAACAACAACTTGGGGAGGTTTCCCTAAATGTTCCTAGGTGAACCCAAACCTATGACCCTCAACACTTTTCTAGGTAAAGCAAGCTCCTGACATTATCTGTGGATATCCTCTCATTAGAAGAAGAGGAAAGAGACCATCTCAAAATAATTCATTTAATATAGCTTTTCAGCATTAAATTTATTTTGATAAAGAGATACAAAGTAAA-AAAATTTCTTAAAAACTATAAACTTTCAAGCATTCTCACACTAAATCTAGCCCTGCTCACATGCCAGGG
i rheMac3.chr14                C 0 C 0
s macFas5.chr14                85834779 381 + 130733371 GATACTGAGAACAGTTCTCCTAGGTATATGCTATGTCTCTGGGGTGACATGATGCTCTCATCTGGCCTCTGTGAGCTTAATTCTCTCTTACATTTACCCCACTCTTCAACAACAACTTGGGGAGGTTTCCCTAAATGTTCCTAGGTGAACCCAAACCTATGACCCTCAACACTTTTCTAGGTAAAGCAAGCTCCTGACATTATCTGTGGATATCCTCTCATTAGAAGAAGAGGAAAGAGACCATCTCAAAATAATTCATTTAATATAGCTTTTCAGCATTAAATTTATTTTGATAAAGAGATACAAAGTAAA-AAAATTTCTTAAAAACTATAAACTTTCAAGCATTCTCACACTAAATCTAGCCCTGCTCACATGCCAGGG
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79843871 381 + 123829720 GATACTGAGAACAGTTCTCCTAGGTATATGCTGTGTCTCTGGGGTGACATGATGCTCTCATCTGGCCTCTGTGAGCCTAATTCTCTCTTACATTTACCCCACTCTTCAACAACAACTTGGGGAGGTTTCCCTAAATGTTCCTAGGTGAACCCAAACCTATGACCCTCAACACTTTTCTAGGTAAAGCAAGCTCCTGACATTATCTGTGGATATCCTCTCattagaagaagaggaaagagaccacctcaaaataattcatttaatataGCTCTTCagcattaaatttattttgataaagagatacaaagtaaa-aaaatttcttaaaaactatAAACTTTCAAGCATTCTCACACTAAATCTAGCCCTGCTCACATGCTAGGG
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81237151 381 + 126035930 GATACTGAGAACAGTTCTCCTAGGTATATGCTATGTCTCTGGGGTGACATGATGCTCTCATCTGGCCTCTGTGAGCTTAATTCTCTCTTACATTTACCCCACTCTTCAACAACAACTTGGGGAGGTTTCCCTAAATGTTCCTAGGTGAACCCAAACCTATGGCCCTCAACACTTTTCTGGGTAAAGCAAGCTCCTGACATTATCTGTGGATATCCTCTCATTAGAAGAAGGGGAAAGAGACCATCTCAAAATAATTCATTTACTATAGCTTTTCTGCATTAATTTTATTTTGATAAAGAGATACAAAGTAAA-AAAATTTCTTAAAAACTATAAACTTTCAAGCATTCTCACACTAAATCTAGCCCTGCTCACATGCCAGGG
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=6524.000000
s hg38.chr14_KI270725v1_random    70007 6 +    172810 AAATAA--
s panTro4.chrUn_GL393527         148094 6 +    341619 AAATAT--
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2078806 6 +  72422247 AAATAT--
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90065021 6 + 135538710 AAATAT--
i rheMac3.chr14                C 0 C 0
s macFas5.chr14                85835160 6 + 130733371 AAATAT--
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79844252 6 + 123829720 AAATAT--
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81237532 6 + 126035930 AAATAT--
i chlSab2.chr1                 C 0 C 0
s micMur1.scaffold_6939           84216 6 +    121919 --GTTTAG
i micMur1.scaffold_6939        N 0 N 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=339064.000000
s hg38.chr14_KI270725v1_random    70013 187 +    172810 AAATGTAATCTGTTTCTCAACCTGACCAGGATGCTACAGTAATT--AAAAATAAACTCAATCCCTGGATCCCTACCAAAGGGTCATTTCATATGGATCAAAG-----------------TTCTGGTAAAATTATTTGTCTGGAAATAGACTAATTCTCCAAAATATAATTGAAAT---AGCCTCTGGAAAGGGCCAAATACGACTCTTA
s panTro4.chrUn_GL393527         148100 192 +    341619 AAAGGTAATCTGTTTCTCAACCTGACCAGGATGCTATAGTAATTAAAAAAAAAAACTCAATCCCTGGATCCCTACCAAAGGGACATTTCATATGGATCAAAG-----------------TTCTGGAAAAATTATTTGTCTGGAAATAGACTAATTCTCTAAAATATAATTGAAATAACAGCCTCTGGAAAGGGCCAAATATGACTCTTA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2078812 190 +  72422247 AAAGGTGATCTGTTTCTCAATCTGACCAGGATGCTACAGTAATT--AAAAATAAACTCAATCCCTGGATCCCTACCAAAGGGTCATTTCATATGGATCAAAG-----------------TTCTGGAAAAATTATTTGTCTGGAAATAGACAAATTCTCCAAAGTATAATTGAAATAACAGCCTCTGGAAAGGGCCAAATAAGACTCTTA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr14                90065027 207 + 135538710 AAAGGTGATCTGTTTCTCAACCTGACCAGGATGCTACAGTAATT--AAAAATAAATTCAATCCCTGGATCCCTACCAAAGGGTGATTTCATATGGCTCAAAGTGTATCTAGTCATCACATTCTGGAAAAATTATTTGTCTGGAAATAGACAAATTATCCAAAATATAATTGAAATAATAGCCTCTGGAAAGGGCCAAATATGACTCTTA
i rheMac3.chr14                C 0 C 0
s macFas5.chr14                85835166 207 + 130733371 AAAGGTGATCTGTTTCTCAACCTCACCAGGATGCTACAGTAATT--AAAAATAAATTCAATCCCTGGATCCCTACCAAAGGGTGATTTCATATGGCTCAAAGTGTATCTAGTCATCACATTCTGGAAAAATTATTTGTCTGGAAATAGACAAATTATCCAAAATATAATTGAAATAATAGCCTCTGGAAAGGGCCAAATATGACTCTTA
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79844258 207 + 123829720 AAAGGTGATCTGTTTCTCAACCTGACCAGGatgctacagtaatt--aaaaataaattcaatccCTGGATCCCTACCAAAGAGTGATTCCATATGGATCAAAGTGTATCTAGTCATCACATTCTGGAAAAATTATTTGTCTGGAAATAGACaaattatccaaaatataattgaaataacaGCCTCTGGAAAGGGCCAAATATGACTCTTA
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81237538 207 + 126035930 AAAGGTGATCTGTTTCTCAACCTGACCAGGATGCTACAGTAATT--AAAAATAAATTCAATCCGTGGATCCCTACCAAAGGGTGATTTCATATGGATCAAAGTGTATCTAGTCATCACATTCTGGAAAAATTATTTGTCTGGAAATAGACAAATTATCCAAAATATAATTGAAATAATAGCCTCTGGAAAGGGCCAAATATGACTCTTA
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e nomLeu3.chrUn_GL397743_2        28708 2334 +    112108 I

a score=2768297.000000
s hg38.chr14_KI270725v1_random    70200 1243 +    172810 ATGATACAACAGGT-AAATATAGGTCTGATGTTCATTCCGTGTGGACAACAATAGCAGCCATTCCCACAAATGGCTCATTTGTGGGAAGTAAACACTACTTTTGCAGAATCTTACATGATTTCAGTAGAAGGGCAAGGACATTTCAGTTGGGAACAGATTGCTCCATGGTAATGTGATCACTATGTACCCAACAATGGCTCTTTCTTCCTAACGTCAATGCAGATGTTATTTTCACCTTAACTATTATCATTGCTGTTTCTAACCACAT-AAAAGTGTATCCTTTATATATCTGAAGTAAATTCATACTAGTGGTGTAACATCTCCAGCCATTTAAATGTAAAAACAGAAAACGTATGATGTGTTGATTTACTGTTTTATACTCC-TAACGCATGAAGAGAAGATCCTTTTATTCATTGCctatactttta-------------------tttctaaactttctgtaacactttatcttatatccagcatagaactgagatttgctttttgatttaatctgacaata--tttttcctctaata--agagtcaag-ccacttacttttaatgat-aaattgtgtttgtttatattttgattgccgtatattatgctatgatttagatgcacatatctgtcttttgctgtcttgtttgtttttattgcttttgttttgatgttgtgatatttggaagagttaaacttttattctgatggctaccttatgtaatttcataaaatcatctctttctttagacagtagc----gaatgtctctaaactaagaacaatggtattagctgtattctctttcttgtcctcccTACGTGATTTTTCATCCCACAATTTGATTTAATCATATTAACTTTGTTTCCCCTGGTGCCATTAAGTATGCTTACATTTctataaacaatatcctttgactcccaggcattacagatgagcagtcagtaaaatcattctgaggaatgctttctctttccttttcttccatttttcttagttgtatcatttctatattgccagagcacctacagttgcatttctttctgtcagctttatccagcatttgtttttgtcttttatttgaagttaaatatattccttgttcactacAACACTG-GGGGAAGGAAGGTTTCTGTTGTCATTGTTGTGCTTGTACAGTTGTTTATTTAAAAACATTGGCGA----AAACAAAAACTGTATGTAGATGGAGTGGAGATAAGACAGCAAATGAGAGAGACTGATGATGAGTGTGCCTATTCTAGACT-----------------------------------------GGGAGGC
s panTro4.chrUn_GL393527         148292 1245 +    341619 ATGATACAACAGCT-AAATATAGGTCTGATGCTCATTCCGTGTGGACAACAATAGCAGCCGTTCCCACAAATGGCTGATTTGTGGGAAGTAAACACTACTTTTGTAGAATCTTACATGATTTCAGTAAAAGGGCAAGGACATTTCAGTTGGGAACAGATTGCTCCATGGTAATGTGATCACTATGTACCCAACAACGGCTCTTTCTTCCTAGCATCAATGCAGATGTTATTTTCACCTTAACTATTATCATTGCTTTTTCTAACCACAT-AAAAGTGTATCCTTTATATATCTGAAGTAAATTCATACTAGTGGTGTAACATCTCCAGACATTTAAGTGTAAAAACAGAAAATGTATGATGTGTTTACTTACTGTTTTATACTCC-TAATGCATGAAGAGAAGATCCTTTTATtcattgcctatactttta-------------------tttctaaactttctgtaacactttatcttatatccagcatagaattgagatttgctttatgatttaatctgacaata-ttttttcctctaata--agagtcatgcccacttgcttttaatgat-aaattgtgtttggttatattttgattacagtgtattgtgctatgatttatatgcacatatctgtcttttgctgtcttgtttgtttttattgcttttgttttgatgttgtgatatttggaagagttaaactttcattctgatggctaccttatgtaattTCATAAAATCATCTCTTTCTTTAGACAGTAGC----TAATGTCTCTAAACTAAGAACAATGGTATTAGTTGTATTCTCTTTCTTGTCCTCCCTCTGTGATTTTTCATCACACAATTTGATTTAATCATATTAACTTTGATTCCCCTGATGCCATTAAGTATGCTTACTTTTctataaacaatatcctttgactcccaggcattacagatgagcagtcagtaaaatcattctgaggaatactttctctttccttttcttccatttttcttagttgtatcatttctatattgccagagcacctacagttgcatttctttctgtcagctttatccagcatttgttttcgtcttttatttgaagttaaatatattccttgctcactacAACACTG-GGGGAAGGAAGGTTTCTGTTGTCATTTTTGTGCTTGTACAGTTGTTTATTTAAAAACATTGGCGA----AAACAAAAACTGTATGTAGAAGTAATGGAGATAAGACAGAAAATGAGAGAGACTGATGATGAGTGTGCTTATTCTAGACT-----------------------------------------gggaggc
i panTro4.chrUn_GL393527       C 0 I 4240
s ponAbe2.chrUn                 2079002 1226 +  72422247 ATGAT--AACAGCT-AAATATAGGTCTGATGCTCATTCCGTGTGGATAACAATAGCAGCCATTCCCACAAATGGCTGATTTGTGGGAAGTAAACGCTACTTTTGCAGAATCGTACATGATTTCAGTAGAAGGGCAAGGACATTTCAGTTGGGAACAGATTGCTCCATGGTAATGTGATCACTATGTACCCAA-----------------TAGCGTCAATGCAGATGTTATTTTCACCTTAACTATTATCATTGCTGTTTCTAACCACAT-AAAAGTGTATCCTTTATATATCTGAAGTAAATTCATACTAGTGGTGTAACATCTCCAGCCATTTAAGTGTAAAAAGAGAAAACGTATGATGTGTTTACTTACTGTTTTATACTCC-TAACGCATGAAGAGAAGATCCTTTTATtcattgcctatattttta-------------------tttttaaactttctgtaacactttatcttatatccagcatagaattgagatttgctttttgatttaatctgacaata-ttttttcctctaata--agagtcaagtccacttacttttaatgat-aaattgtgtttggttatattttggttacagtatattatgctatgatttatatgcacatatctgtcttttgctgtcttgtttgtttttattgcttttg-tttgatgttgtgatattttgaagagttaaatttttattctgatggctaccttatgtaatttcataaaatcatctctttctttagacagtagc----taatgtctctaaactaagaacaatggtattagctgtattctctttcttgtcctccctgtgtgatttttcatcccacaatttgatttaatcatattaactttgtttcccctggggccattaagtatgcttacatttctgtaaacaatatcctttgactcccaggcattacagatgagcagtcagtaaaatcattctgaggaatactttctctttccttttcttccatttttcttagttgtatcatttctatattgccagagcacctacagttgcatttctttctgtcagctttatccagcatttgtttttatcttttatttgaagttaaatatattccttgctcactacAACACTTCTGGGAAGGAAGGTTTCTGTTGTCGTTGTTGTGCTTGTATAGTTGCTTATTTAAAAACATTGGCGA----AAACAAAAACTGTATGTAGATGGAATGGAGATAAGACAGAAAATGAGAGAGACTGATGATGAGTGTGCTTATTCTAGACT-----------------------------------------GGGAGGC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        31042 1226 +    112108 ataACACAACAGCT-AAATCTAGCTCTGATGTTTATTCTGTGTGGACAATAACAGCAG-------AGCCAATGGCTGATTTGTGGCAAGTAAACACTACTTTTGCAGAATCGTACATGATTTCAGTAGAAGGGCAAGGAAATTTCAGTTGGGAACAGATTGCTCCATGGTAATGTGATCGCTATGTACCCAACAATGGCTCTTTCTTCCTAGCGTCAATGCAGATGTTATTTTCTCCTTAACTATTATCATTTCTGTTTCTAACCATAT-AAAAGTATATCCATTATATATCTGAAGTAAATTCATACTAGTGGTGTAACATCTCCAGCCATTTAAGTGTAAAAAGAGAAAACGTATGATGTGTTTACTCACTGTTTTATACTCTGTAATGCATGAA---AAGATCCTTTTATtcattgcctgtactttta-------------------tttttaaactttctgaaacactttatcttctatccagcatagaactgagtttccctttttgatttaatctgacaatacttttttcctctaataagagagtcaagcccacttacttttattggt-aaattgtgtttggttatattttggttacagcatgttatgctatgatctatatgcacatatct-tcttttgctgtcttgtttgtttttattgattttgttttgatgttgtgatatttggaagagttaaatttttattctgatggctaccttacgtaatttcataaaatcatctctttctttagacagtagc----taatgtctctaaactaagaacaatggtgttaa-------ctctttcttgtcttccctatgtgatctttcatcccccaatttgatataatgatgttaactttgtttcccctggtgccattaagtatgcctacatttctataaacaatatcctttgactcccaggcattacagatgtgcagtcagtaaaatcattctgcagaataccttctttttccttttcttctatttttcttagttgtatcatttctgtattgccagagcacctacggttgcatttctttctgtcagctttatccagcatttgtttttgtc-----tttgaggttaaatatattccttgctcactaTGACACTG-GTGAAAGGAAGGTTTTTGTTGTCATCGTTGTGCTTGTACAGTTGCTTATTTAAAAACATTGGCGA----AAACAAAAAATGTATGTAGATGGAATGGAGATAAGACAGAAAATGAGAGCGATTGATGATGAGTGTGCTTATTCTAGACT-----------------------------------------GGGAGGG
i nomLeu3.chrUn_GL397743_2     I 2334 C 0
s rheMac3.chr14                90065234 1285 + 135538710 ATGATAAAACAGCT-AAATCTAGGTCTGATGCTTATTCTGTGTGGACAACAATAGCAG-------AGCTGTTGGCTGATTTGTGGGAAGCAAACATTGTTTTTGCAGAATCGTACATGATTTCAGTAGAAGGGCAAGGACATTTCAGTTGGGAACAGATTGCTTCATGGTAATGTGATCACTGTGTACCCAATAATGGCTCTTTCCTCCTAGCGTCGATGCAGATGTTATTGTCTCCTTAACTATTTTCATTTCTGTTTCTGACTACATAAAAAGTGTATTCTTTATATATCTGAAGTAAATTCATACTAGTGGTGTAACATCTCCAGCCGTTTAAGTGTAAAAAGAGAAAATGTATGATATGTTTACTCACTGTTTTATACTCTGCAATGCATGAAGAGAAGATCCTTTTATtcattgtctatactttta--------------------ttttaaactttctgaaacattttatcttatatccagcatagaattgagtttcgc-ttgtgatttaatctgacaatacttttttcctctaataagagagtcaagcccacttacttttattgat-aaattgtgtttggttatattttgattacagcatgttatcctgtgatctatatgcacgtatctgtcttttgctgtcttgattgtttttattgcttttgttttgatgtcgtgatattcggaagagttaaatttttattctgatggctaccttatgtgatttcatagaatcatctctttctttagacagtagc----taatgtctgtaaactatgaacaatagtattaactgtattctctttcttgtcctccctatgtgatctttcatcagccaatttgatataataATATTAACTTTGTTTCCCCTGGTGCCATTAAGTATGCCTACATTTctataaacaatatcctttgac-cccaagcattacagatgagcagtcagtaaaatcatttggcagaatatcttcattttcctttccttccatttttcttagttgtatcatttctatattaccagagcacctacagttgaatttctttctgtcagctttcgccagtgtttgtttttgtcttttatttgaagttaaatatattcgttgctcactacAACACTG-GGGGAAGGAAGGTTTTTGTTGTAGTTGTTGTGCTTGTACAGTTGCTTATTTAAAAACATTGGCGAAAACAAACAAAAACTGTATGTAGATGGAATGGAGATAAGACAGCAAATGAGAGCGAATGATGATAAGTGTGCTTATTCTAGACTGCGAATGATGATAAGTGTGCTTATTCTATGCACACTTGAAGGGGAGGG
i rheMac3.chr14                C 0 C 0
s macFas5.chr14                85835373 1244 + 130733371 ATGATAAAACAGCT-AAATCTAGGTCTGATGCTTATTCTGTGTGGACAACAATAGCAG-------AGCTGTTGGCTGATTTGTGGGAAGCAAACACTGTTTTTGCAGAATCGTACATGATTTCAGTAGAAGGGCAAGGACATTTCAGTTGGGAACAGATTGCTTCATGGTAATGTGATCACTGTGTACCCAATAATGGCTCTTTCCTCCTAGCGTCGATGCAGATGTTATTGTCTCCTTAACTATTTTCATTTCTGTTTCTGACTATATAAAAAGTGTATTCTTTATATATCTGAAGTAAATTCATACTAGTGGTGTAACATCTCCAGCCGTTTAAGTGTAAAAAGAGAAAATGTATGATGTGTTTACTCACTGTTTTATACTCTGCAATGCATGAAGAGAAGATCCTTTTATtcattgtctatactttta--------------------ttttaaactttgtgaaacattttatcttatatccagcatagaattgagtttcgc-ttgtgatttaatctgacaatacttttttcctctaataagagagtcaagcccacttacttttattgat-aaattgtgtttggttatattttgattacagcatgttatcctgtgatctatatgcacgtatctgtcttttgctgtcttgattgtttttattgcttttgttttgatgttgtgatattcggaagagttaaatttttattctgatggctaccttatgtgatttcatagaatcatctctttctttagacagtagc----taatgtctctaaactatgaacaatagtattaactgtattctctttcttgtcctccctatgtgatctttcatcagccaatttgatataataATATTAACTTTGTTTCCCCTGGTGCCATTAAGTATGCCTACATTTctataaacaatatcctttgac-cccaagcattacagatgagcagtcagtaaaatcatttggcagaatatcttcattttcctttccttccatttttcttagttgtatcatttctatattaccagagcacctacagttgaatttctttctgtcagctttcgccagtgtttgtttttgtcttttatttgaagttaaatatattcgttgctcactacAACACTG-GGGGAAGGAAGGTTTTTGTTGTAGTTGTTGTGCTTGTACAGTTGCTTATTTAAAAACATTGGCAAAAACAAACAAAAACTGTATGTAGATGGAATGGAGATAAGACAGCAAATGAGAGCGAATGATGATAAGTGTGCTTATTCTAGACT-----------------------------------------GGGAGGG
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79844465 1269 + 123829720 ATGATAAAACCGCTAAAATCTAGGTCTGATGCTTATTCTGTGTGGACAAAAATAGCAG-------AGCTGTTGGCTGATTTGTGGGAagcaaacactgtttttgcagaatcgTACATGATTTCAGTAGAAGGGCAAGGACATTTCAGTTGGGAACAGATTGCTTCATGGTAATGTGATCACTGTGTACCCAATAATGGCTCTTTCCTCCTAGCGTCGATGGAGGTGTTATTGTCTCCTTaactattttcatttctgtttctaacCATATAAAAAGTGTATTCTTTATATATCTGAAGTAAATTCATACTAGTGGTGTAACATCTCCAGCCATTTAAGTGTAAAAAGAGAAAACGTATGATATGTTTACTCACTGTTTTATACTCTGCAATGCATGAAGAGAAGATCCTTTTATTCATTgtctatacttttatttattgtctatacttttatttttaaactttctgaaacattttatcttatatCCAGCATAGAATGGAGTTTCGC-TTGTGATTTAATCTGACAATACTTTTTTCCTCTAATAAGAGAGTCAAGCCCACTTACTTTTATTGAT-AAATTGTGTTTGGTTATATTTTGATTACAGCATGTTATCCTGTGATCTATATGCACGTATCTGTCTTTTGCTGTCTtgattgtttttattgcttttgttttgatgTCGTGATATTCGgaagagttaaatttttattctgatgGCTACCTTATGTGATTTCATAAAATCATCTCTTTCTTTAGACAGTAGCTAATTAATGTCTCTAAACTATGAACAATAGTATTAACTGTATTCTCTTTCTTGTCCTCCCTATGTGATCTTTCATCAGCCAATTTGatataataatattaactttGTTTCCCCTGGTGCCATTAAGTATGCCTACATTTCTATAAACAATATCCTTTGAC-CCCAAGCATTACAGATGAGCAGCCAGTAAAATCATTTGGCAGAatatcttcattttcctttccttccatttttcttagTTGTATCATTTCTATATTACCAGAGCACCTACAGTTGAATTTCTTTCTGTCAGCTTTCTccagtgtttgtttttgtcttttatttgaaGTTAAATATATTCGTTGCTCACTACAACACTG-GGGGAAGGAAggtttttgttgtagttgttgtgcTTGTACAGttgcttatttaaaaacattggcgaaaacaaacaaaaactgtatgtAGATGGAATGGAGATAAGACAGCAAATGAGAGCGAATGATGATGAGTGTGCTTATTCTAGACT-----------------------------------------GGGAGGG
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81237745 1241 + 126035930 ATGATAAAACAGCT-AAATCTAGGTCTGGTGCTTATTCTGGGTGGATAACAATAGCAG-------AGCTGTTGGCTGATTTGTGGGAAGCAAACACTGTTTTTGCAGAGTCGTACATGATTTCAGTAGAAGGGCAAGGACATTTCAGTTGGGAACAGATTGCTTCATGGTAATGTGATCACTGTGTACCCAACAATGGCTCTTTCCTCCTAGCATCAATGCAGATGTTATTGTCTCCTTAACTATTTTCATTTCTGTTTCTGACCATATAAAAAGTGTATTCTTTATATATCTGAAGTAAATTCATACTAGTGGTGTAACATCTCCAGCCGTTTAAGTGTAAAAAGAGAAAACGTATGCTGTGTTTACTCACTGTTTTATACTCTGCAATGCAT-----GAAGATCCTTTTATtcattgtctatactttta--------------------ttttaaactttctgaaacattttatcttatatccagcatagaattgagtttcgc-ttgtgatttaatctgacaatatttttttcctctaataagagagtcaagcccacttacttttattgataaaattgtgtttggttatattttgattacagcatgttatcctatgctctatatgcacgtatctgtcttttgctgtcttgattgtttttattgcttttgttttgacatcatgatattcggaagagttaaatttttattctgatggctaccttatgtaatttcataaaatcatctctttctttagacagtagc----taatgtctctaaactatgaacaatagtattaactgtattctctttcttgtcctccctatgtgatctttcatcagccaatttgatataataATATTAACTTTGTTTCGCCTGGTGCCATTAAGTATGCCTACATTTctataaacaatatcctttgactcccaagcattacagatgagcagtcagtaaaatcatttggcagaatatcttcattttcctttccttccatttttcttagttgtatcatttctatattaccagagcacctagagttgaatttctttctgtcagctttctccagtatttgtttttgtcttttatttgaagttaaatatattccttgctcactacAACACTG-GGGGAAGGAAGGTTTTTGTTGTAGTTGTTGTGCTTGTACAGTTGCTTATTTAAAAACATTGGCGGAAACAAACAAAAGCTGTATGTAGATGGAATGGAGATAAGACAGCAAATGAGAGAGAATGATGATGAGTGTGCTTGTTCTAGACT-----------------------------------------GGGAGGG
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I

a score=2151616.000000
s hg38.chr14_KI270725v1_random    71443 1200 +    172810 GTGCTACACTGAGTAGTGTCT-CAAGGCCACAGGAAAGGATGGTTGATTGTGAGCAGGTGGACTTTCCACTGGAGGAGAGAAGTCCTGCGCTCAACAACCTGTGCAGAACCAGAAACTGGTAATGCTTCAAATCAACTTACAGACCTGGAGGTAGAAATTTAAGAAAACTCGTTTAGCACCTAGTTACCTAGAAAATATTAGCAACTATTTGCTGAGCATCTATCAGTCTGTCTGTAGCATGGAAGACCTGAGTACAGGGGAAACTGGATTAGTAACAGTGGGTCAGAAAATTATATAATATTCAACCAAAATTCCTGCTTTACATACACAGCA-CCTGGTATTTCCAGAACTAGAAGGTAAAGAAATTATTTGTGCTTGAACTTGCAGAAAACTGCCTTTTCCCttcttctcttgcatcttaacctggagctt--ccttttcttgagcctcagtgtgcttcccaactcaatttatagttgacttcctgcagtttctctttaggacagggctttattttgggggtggttaatttgtagggttcataggaaacagaccactcacagcacctgctttttgccatcctcactctcagctatgagttgaggcccaggaagccttctgccagcctcagctgctgttctcagattaatctgctgagttcttttcgcctagtaagaatctctgaatttaggaacatagatgttagcgcttgtatttctaggttttccagttcccagggccattaaacatttt-----ttt-ctttcctttccttcttccaaaaaaattggtgattcgcctggttccctctggtttaacctcacaaaaggtccatgatgacaccctgttacattgttttgtcatagttaataccttgttatcccagttgctcagtcag-ttttgtgagagattcagggatattaataaaactgtgctgctgcTTCTACTAACACCTTGCATAAAAGTCCTATTAATTAAAATGTTTATTTTGCATGTGATTTGAACTTGTAATTTTTATTCAAAGTTTTTCAACAGAGATCCAGAAAAGACC----------------------------------------CTCATTATATTTTTAGTTTTGTGCATTGCAACACTTTTTAGTG---AAAAAAAA------------AATACATGAGAACAACACAAGTGATTTTAAAAGAATAAACCTACAATCCATTAATTATAAAATGAAATACTATGCAGGTGTTAAGAATGAGGAAATCAATAAGAAC
s ponAbe2.chrUn                 2080228 1208 +  72422247 GTGCTACACTGAGTGGTGTCTCCAAGGCTGCAGGAAAGGATGGTTGATTGTGAGCAGGTGTACTTTCCACTGGAGGAGAGAAGTCCTGCGCTCAACAACCTGTGCAGAACCAGGAACTGGTAATGGTTCAAATCAACTTACAGACCTGGAGGTAGAAATTTAAGAAAACTCGTTTAGCACCTAGTTTCCTAGAAAATATTAGCTACTATTTGCTGAGCATCTGTCAGTCTGTCTGTAGCATGGAAGATCTGAGTACAGGGGAAACTGGATTAGTAACAGTGGGTCAGAAAATTATATAATATTCAACCAAAATTCCTGCTTTACATACACAGCACCCTGGTATTTCCAGAACTAGAAGGTAAAGAAATTATTTGTGCTTGAACTTGCAGAAAACTGCCTTTTCCCGTCTTCTCTTGCATCTTAACCTGGAGCTTC-CCTTTTCTTGAGCCTCAGTGTGCTTCCCAACTCAATTTATAATTGACTTCCTGCAGTTTCTCCTTAGGACAGGGCTTTGTTTTGGAGGTGGTTAATTTGTAGGGTTCATAGGAAACAGACCACTCACAGCACCTGCTTTTTGCCATCCTCACTCTCAGCTATGAGTTGAGGCCCAGGAAGCCTTCTGCCAGCCTCAGCTGCTGTTCTCAGATTAATCTGCTGAGTTCTTTTTGCCTAGTGAGAATCTCTGAATTTATGAACATAGATGTTAGCACTTGTATTTCTAGGTTTTCCAGTTCCCAGGGCCATTAAACATTTT-----TTTCCTTTCCTTTCCTTCTTCCAAAAAAATTGGTGATACCCCTGGGTCCCTGTGGTTTAACCTCACAAAAGGTCCATGATGACACCCTGTTACATTGTTTTGTCATAGTTAATACCCTGTTATCCCAGTTGCTCAGTCAGTTTTTATGAGAGATTCAGGGATATTAACAAAATTGTGCTGCTGCTGCTACTAACATCTTCCATAAAAGCCCTATTAATTAAAATGTTTATTTTGCATGTGATTTGAACTTGTAATTTTTATTCAAAGTTTTTCAACAGAGATCCAGAAAATACC----------------------------------------TTCCTTATATTTTTAGTTTTGTGCATTGCAACACTTTTTAGTGAAAAAAAAAAA------------AAAACATGAGAACAACACAAGTGATTTTAAAAGAATAAACCTACAATCCATTAATTATAAAATGAAATACTATGCAGGTGTTAAGAATGAGGGAATCAATAAGAAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        32268 1202 +    112108 GTGCTACACTGAGTAGTGTCTCCAAGGCTACAGGAAAGGATGGTTGATTGTGAGCAGGTGGAGTTTCCACTGGAGGAGAGAAGTCCTGTCTTCAACAACCTGTGCAGAACCAGGAAATGGTAATGGTTCAAATCAACTTACAGACCTGGAGGTAGAAATTTAAGAAAACTCATTTAGCACCTAGTTTCCTAGAAAATATTGGCTACTATTTGCTGAGCATCTGTCAGTCTGTCTGTAGCATGGAAGATCTGAGTACAGGAGAGACTGGATTAGTAACAGTGGGTCAGAAAATTATATAATATTCATCCAAAATTCCTGCTTTACATACACAGCA-CCTGGTATTTCCAGAACTAGAAGGCAAAGAAATTATTTGTGTTTGAACTTGCAGAAAACTGCCTTTTCCCttcttctcttgcatcttaacctggagtttctctttttcttgagcttcagtgtccttcccaactcaatttataattcacttcctgcagtttccccttaggacagggctttgtttcagaggtggttaatttgtagggttcataggatacagaccactcacagcacctgctttttgccatcctcactctcagctgggagttgaggctcaggaagccttctgcaagcctcagctgctgttctcagattaatctgccaaggtctttttgcctagtaggaatctctgaatttagcaacatagatgttagcgcttgtatttctagttttcccagttcccagggccattaaagatttt-----tttcctttccttttcttcttccaaaaaagttggtgattccctcgggtccctgtggtttaacctcacaaaaggttcatgatgacaccctgttacattgttttatcatagttaatacctcgttatcccagttgctcagtcagattttgtgagagattcagggatattaataaaactgtgctgctg---ctactaacatcttGCATAAAAGCCCTATTAATTAAAATGTTTATTTTACATGTGATTTGAACTTGTAATTTTTATTCAAAGTTTTTCAACAGAGATTCAGAAAAGACC----------------------------------------CTCCTTATATTTGTAGTTTTGTGCATTGCAACACTTTTTAGTG---AAAAAAAA------------AAAACATGAGAACAACACAAGTGATAGTAAAAGAATAAACCTACAATCCATTAATTATAAAATGAAATACTGTGCAGGTGTTAAGAATGAAGGAATCAATAAGAAC
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s rheMac3.chr14                90066519 1255 + 135538710 GTGCTACACTGAGTAGTGTCTCCAAGGCTGCAGGAAAGGATGGTTGATTGTGAGCAGGTGGAGTTTCCACTGGAGGAGAGAAGTCCTGCCCTCAACAACCTGTGCAGAATCAGGAACTGGTAATGGTTCAAATCAACTTACAGACCTGGAGGTAGAAATTTAAGAAAACTCGTTTAGCACCTAGTTTCCTAGAAAATATTAGCTACTCTTTGCTGAGCATCTGTCAGTCTGCCTGTAGCATGGCAGATCTGAGTACAGGGGAGACTGGATTAGTAACAATGGGTCAGAAGATAATATAATATTCAACCAAAATTGCTGCTTTACATACACAGCA-CCTGGTATTTCCAGAACTAGAAGGTAAAG-AATTATTTGTGCTTGAACTTGCAGAAAACTGCCTtttcccttcttctcttgtatctcaacctgaagcttc-tcttttcttgagcctcagtgaacttcccaactcaatttataattgactttctgcagtttctccttaggacagggctttgttttggggatggttaacttgtagggttcataggatacagaccactcacagcacctgctttttgtcatccttactctcagctgtgagttgaggcccaggaagccttctgccagcctcagctgctgttctcagattaatctgctgagttcttgttgcctagtaggaatctctgaatttaggaacatagatgttagcacttgtatttctaggttttccagttcccagggccattaaagatttttttcctttcctttcctttccttcttccaaaaaagttggtgattcccctggatccctatggtttaacctcacaaaacgttcatgatgacaccttgttacattgttttgtcatagttaataccttgttatcccagttgctcagtcagtttttgtgagagattcagggatattaataaaactgtgctgctg---ctactaacatcttGCATAAAAGCCCTATTAATTAAAATGTTTATTTTGCATGTGATTTGAACTTATAATTTTTATTCAAAGTTTTTCAA-AAAAATACAGAAAAGACCCTCCTTGTATTTGTAGCTTCGTGCATTGAAACACTTTTTACTCCTTGTATTTGTAGCTTCGTGCATTGCAACACTTTTTAGTG---GAAAAGAA-ACAAAAAACAAAAAACATGAGAACAACAGAAGTGATTTTAAAAGAATAAACCTACAATCCACTAATTATAAAATGAAATACTATGCAGCTGTTAAGAATGAGGGAATCAATAAGAAC
i rheMac3.chr14                C 0 I 1010
s macFas5.chr14                85836617 1215 + 130733371 GTGCTACACTGAGTAGTGTCTCCAAGGCTGCAGGAAAGGATGGTTGATTGTGAGCAGGTGGAGTTTCCACTGGAGGAGAGAAGTCCTGCCCTCAACAACCTGTGCAGAATCAGGAACTGGTAATGGTTCAAATCAACTTACAGACCTGGAGGTAGAAATTTAAGAAAACTCGTTTAGCACCTAGTTTCCTAGAAAATATTAGCTACTCTTTGCTGAGCATCTGTCAGTCTGCCTGTAGCATGGCAGATCTGAGTACAGGGGAGACTGGATTAGTAACAATGGGTCAGAAGATAATATAATATTCAACCAAAATTCCTGCTTTACATACACAGCA-CCTGGTATTTCCAGAACTAGAAGGTAAAG-AATTATTTGTGCTTGAACTTGCAGAAAACTGCCTtttcccttcttctcttgtatctcaacctgaagcttc-tcttttcttgagcctcagtgaacttcccaactcaatttataattgactttctgcagtttctccttaggacagggctttgttttggggatggttaacttgtagggttcataggatacagaccactcacagcacctgctttttgtcatccttactctcagctgtgagttgaggcccaggaagccttctgccagcctcagctgctgttctcagattaatctgctgagttcttgttgcctagtaggaatctctgaatttaggaacatagatgttagcacttgtatttctaggttttccagttcccagggccattaaagatttttttcctttcctttcctttccttcttccaaaaaagttggtgattcccctggatccctatggtttaacctcacaaaacgttcatgatgacaccttgttacattgttttgtcatagttaataccttgttatcccagttgctcagtcagtttttgtgagagattcagggatattaataaaactgtgctgctg---ctactaacatcttGCATAAAAGCCCTATTAATTAAAATGTTTATTTTGCATGTGATTTGAACTTATAATTTTTATTCAAAGTTTTTCAA-AAAAATACAGAAAAGACC----------------------------------------CTCCTTGTATTTGTAGCTTCGTGCATTGCAACACTTTTTAGTG---Gaaaaaaa-acaaaaaacaaaaaaCATGAGAACAACAGAAGTGATTTTAAAAGAATAAACCTACAATCCACTAATTATAAAATGAAATACTATGCAGCTGTTAAGAATGAGGGAATCAATAAGAAC
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79845734 1210 + 123829720 GTGCTACACTGAGTAGCGTCTCCAAGGCTGCAGGAAAGGATGGTTGATTGTGAGCAGGTGGAGTTTCCACTGGAGGAGAGAAGTCCTGCCCTCAACAACCTGTGCAGAATCAGGAACTGGTAATGGTTCAAATCAACTTACAGACCTGGAGgtagaaatttaagaaaactcGTTTAGCACCTAGTTTCCTAGAAAATATTAGCTACTCTTTGCTGAGCATCTGTCAGTCTGCCTGTAGCATGGCAGATCTGAGTACAGGGGAGACTGGATTAGTAACAATGGGTCAGAAGATAATATAATATTCAACCAAAATTCCTGCTTTACATACACAGCA-CCTGGTATTTCCAGAACTAGAAGGTAAAG-AATTATTTGTGCTTGAACTTGCAGAAAACTGccttttcccttcttctcttgTATCTCAATCTGAAGCTTC-TCTTTTCTTGAGCCTCAGTGAACTTCCCAACTCAATTTATAATTGACTTTCTGCAGTTTCT-CTTAGGACAGGGCTTTGTTTTGGGGATGGTTAACTTGTAGGGTTCATAGGATACAGACCACTCACAGCACCTGCTTTTTGTCATCCTTACTCTCAGCTGTGAGTTGAGGCCCAGGAAGCTTTCTGCCAGCCTCAGCTGCTGTTCTCAGATTAATCTGCTGAGTTCTTGTTGCCTAGTAGGAATCTCTGAATTTAGGAACATAGATGTTAGCACTTGtatttctaggttttccagttccCAGGgccattaaagatttt-----tttcctttcctttccttcttccaaaAAAGTTGGTGATTCCCCTGGATCCCTGTGGTTTAACCTCACAAAACGTTCATGATGACACCTTGTTACATTGTTTTGTCATAGTTAATACCTTGTTATCCCAGTTGCTCAGTCAGTTTTTGTGAGAGATTCAGGGATATTAATAAAACTGTGCTGCTG---CTACTAATATCTTGCATAAAAGCcctattaattaaaatgtttattttgcatgtgatttgaacttataatttttattcaaagtttttcaacaaaaatacagaaaagacc----------------------------------------CTCCTTGTATTTGTAGCTTCGTGCATTGCAACACTTTttagtg---gaaaaaaa-acaaaaaacaaaaaacatgagaaCAACAgaagtgattttaaaagaataaacctACAATCCactaattataaaatgaaatactatgcagctgttaaGAATGAGGGAATCAATAAGAAC
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81238986 1211 + 126035930 GTGCTACACGGAGTAGTGTCTCCAAGGCTGCAGGAAAGGATGGTTGATTGTGAGCAGGTGGAGTTTCCACTGGAGGAGAGAAGTCTTGCCCTCAACAACCTGTGCAGAATCAGGAACTGGTAATGGTTCAAATCAACTTACAGACCTGGAGGTAGAAGTTTAAGAAAACTCATTTAGCACTTAGTTTCCTAGAAAATATTAGCTACTCTTTGCTGAGCATCTGTCAGTCTGTCTGTAGCGTGGCAGATCTGAGTACAGGGGAGACTGGACTAATAACAATGGGTCAGAAGATAATATAATATTCAACCAAAATTCCTGCTTTACATACACAGCA-CCTGGTATTTCCAGAACTAGAAGGTAAAG-AATTATTTGTGCTTGAACTTGCAGAAAACTGCCTtttcccttcttctcttgtatctcaacctgaagcttc-tcttttcttgagcctcagtgaacttcccaactcaatttataattgactttctgcagtttct-cctaggacagggctttgttttgcggatggttaacttgtagggttcataggatacagaccgctaacagcacctgctttttgtcatccttactctcagctgtgagttgaggcccaggaagccttctgccagcctcagctgctgttctcagattaacctgctgagttcttgttacctagtaggaatctctgaatttaggaacatagatgttagcacttgtatttctaggttttccagttcccagggcccttaaaggtttt-----tttcctttcctttccttcttccaaaaaagttggtgattcccctggatccctgtggtttaacctcacaaaatgttcatgatggcaccctgttacattgttttgtcatagttaataccttgttatcccagttgctcagtcagtttttgtgagagattcagggatattaataaaactgtgctgctg---ctactaacatcttGCATAAAAGCCCTGTTAATTAAAATGTTTATTTTGCATGTGATTTGAACTTATAATTTTTATTCAAAGTTTTTCAACAAAAATACAGAAAAGACC----------------------------------------CTCCTTGTATTTGTAGCTTCGTGCATTGCAACACTTTTTAGTG---GGAAAAAACCCAAAAAACAAAAAACATGAGAACAACAGAAGTGATTTTAAAAGAATAAACCTACAATCCACTAATTATAAAATGAAATACTATGCAACTGTTAAGAATGAGGGAATCAATAAGAAC
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=993705.000000
s hg38.chr14_KI270725v1_random    72643 844 +    172810 TTGTGTGGGGTAACTATAAACTTT--AAAAAAAAAATTAATGCTCATGTGACCATATTATCGTT----AAAAAAATACAAGCATACTTGCACACACCTTCAAGCAAAATGGGTACACGCATTTAAAAATATTTAAATTAAGTAAATGGCCCAATAATTTAACTTTGTATAATTCTATGTTCTCCGATTATTTTATATGCTAGAAACAGGCATTACTGTTGTGTTTATTTCAtttgaaataattgt--agtcacatgaggtttaagttataatacagagaggtcacatatgcctattttctaattggataccttatttattactgttgagttttgagaattttttacatatgctagatgtaagttctttgtcagatatatggtatgcaaattatttctcccagtctgtaattcattttttcaacctctttacaggg----tctaagtaaaaaaaaaaaaaaaaaa---gtgtttatttattttaatgaagtccagttttatcactttttccttctgtagattttgttttcaacatcaagcctaaaaattctttgcctagcccaaggtctcaagagttttcttc-tattttaaaaagtttaatga----------------attta----TTTATTTATTAATTAtttttgagacgaggtttcgccgaagctgtagtgcagtggtgtcatcattgctcactgcagccactaacagctggattgaagtgatccttccacctcagccacttgagtagtagctgggattacaggcacgagctaccatacacaactttaagttttataATAttgcattttacatttaagcctgtgatttatgtgagctaaattttatataaagtataaatttaggtcagtcttagt
s ponAbe2.chrUn                 2081436 855 +  72422247 TTGTGTGGGGTAATTGTAAACTTTTAAAAAATAAATTTAATGCTCATGTGACCATATTATCGTT--AAAAAAAAAAACAAGCATACTTGCACACACCTTCAAGTAAAATGAGTACATGCatttaaaaatatttaaattaaGTGAATGGCCCAATAATTTAACTTTATACAATTCTATGTTCTCTGATTATTTTATATGCTAGAAACAGGCATTACTGTTTTGTTTATTTCAtttgaaataattgt--agtcacatgaggtttaagttataatacagagaggtcgcatatgcctattttctaattggataccttatttactactattgagttttgagaattttttacatatgctagatgtaagttctttgtcagatatatggtatgcaaattatttctcccagtctgtagttcattttttcaacctctttacagggtctttctaagtaaaaaaaaaaaaaaaaaaaaggtgtttatttattttaatgaagtccagttttatcactttttccttttgtagattttgtttttgatatcaagcctaaaaattctttgcctagcccaaggtctcaagagttttattc-tattttaaaaagtttAATGA----------------Attta----tttatttatttattatttttgagactaggtttcacccaagttgtagggcagtggtgccatcattgctcactgcagccactaactactggattgaagtgatccttccacctcagccacttgagtagtagctgggattacaggcacgagctaccatacacaactttaagttttataATAttacattttacatttaagcctgtgatttatgtgagctaaattttatataaagtataaatttaggtcagtcttagt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        33470 838 +    112108 TTGTGTGGGGTAACTATAAACTTTAAAAAAATAAAGTATATGCTCATGTGACCATATTATTGTT--AAAAAAATAACCAAGAATACTTGCACACAGCTTCAAGCAAAATGGGTACATTCATTTAAAAATATTTAAATTAAGTAAATGGCCCAATAATTTAACTTTGTAAAATTCTGTGTTCTCCGATTATTTTATATGCTAGAAACAGGCATTACTGTTTTGTTTATTTCAtttgaaataattgt--agtcacatgaggtttaagttataatacacagaggtcacatatgccaattttctaaatggataccttatttattactattgagttttgagaattctttacatatgctagatgtaag-------------acatggtatgcaaattatttctcccagtctgtaattcagtttttcaacctctttacagggtctttctaagtaaaaaaaaaaaaaa-------gtgtctatttattttaatgaagtccagttttatcactttttccttttgtagattttgtttttgatatcaagcctaaaaattctttgcctagcccaaggtctcaagagttttcttc-tatttttaaaagtttaatTA----------------ATTAATTAGTTAAtttgtttattatttttgagacgaggtttcgcccaagctgtagtgcagtggtgccatcattgctcactgtagccacaaacta-tggactgaagtgatccttctgcctcagccactggagtagtagctgagattacaggcacgagctaccacacacaacttaaagttttgtaATACtacatttcacatttaagcctgtgatttatgtgagttaaattttatataaagtataaatttaggtcaatcttagt
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85837832 856 + 130733371 -AGTGTGGGATAACTGTAAACTTCTAAGAAATAAAGTATATGCTCATGTAACCATATTATCGTT--AAAAAAAAATACAAGCATACTTGTACACACCTTCAAGCAAAATTGGTACATGCATTTAAAAATATTTAAATTAAGTAAATGGTCCAATAATTTAACTTTGTACAATTCTATGTTCTCTGATTATTTTATATGCTAGAAACAGGCATTACTGTTTCAtttatttcatctgaaataattgtagagtcacatgaggtttaagttataatacagagaggtcacatatgcctattttctaattggatacc----ttattactattgagttttgagaattctttacataagctagatgtaagttctttgtcagata-atggtgtgcaaattatttctcccagtctgtaattcattttttcaacctctttacagggtctttctaagttatatatatatatatataa--aagtttatttattttaatgaagtccagttttatcactttttccttttgtggattttgtttttgatatcaagcctaaaaattctttgcctagcccgagacctcaagagttttcttc-tatttttaaaagtttAATGA------------atttatttatttatttatttatttatta-tttTGAGATGAGGTTtcactcaaactgtagtgcagtggtgccatcattgctcactacagccacaaactactggactgaagtgatccttccgcctcagccacttgagtagtagctgagattacaggcaaaagctaccatacacaacttaaagttttataATAttacgttttacatttaagcttgtgatttatgtgagctacattttatataaagtataaatttaggtcaatcttaat
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79846944 853 + 123829720 -AGTGTGGGGTAACTGTAAACTtctaagaaataaagtatatGCTCATGTAACCATATTATcgtt--aaaaaaaaacacaagcataCTTGTACACACCTTCAAGCAAAATTGgtacatgcatttaaaaatatttaaattaagtaaATGGTCCAATAATTTAACTTTGTACAATTCTATGTtctctgattattttaaatgctaGAAACAGGCAttactgtttcatttatttcatctgAAATAATTGTAGAGTCACATGAGGTTTAAGTTATAATACAGAGAGGTCACATATGCCTATTTTCTAACTGGATACC----TTATTACTactgagttttgagaattctttacaTAAGCTAGATGtaagttctttgtcagata-atgGTGTGCAAAttatttctcccagtctgtaatTCATTTTTTCAACCTCTTTACAGGGTCTTtctaagttatatatatatatttaaaa--aagtttatttattttaatgaaatccagttttatcactttttccttttgtggattttgtttttgatatCAAGCCTAAAAATTCTTTGCCTAGCCCGAGACCTCAGgagttttcttcttatttttaaaagtttaatga----------------atgaattaattaatttatttatta-ttttgagatgaggtttcactcaaactgtagtgcagtggtgccatcattgCTCACTACAGCCACAAACTactggactgaagtgatccttccgcctcagccacttgagtagtagctcagattacaggcaaaAGCTACCATACACAACTTAAAGTTTCATAATATTacgttttacatttaagcctgtGATTTATGTGagctaaattttatataaagtataaatttaGGTCAATCTTAGT
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81240197 873 + 126035930 -AGTGTGGGGTAACTGTAAACTTCTAAAAAATAAAGTATATGCTCATGTAACCATATTATCGTTAAAAAAAAAAATACAAGCATACTTGCACACACCTTCAAGCAAAATGGGTACATACATTTAAAAATATTTAAATTAAGTAAATGGTCCAATAATTTAACTTTGTAAAATTCCATGTTCTCTGATTATTTTATATGCTAGAAACAGGCATTACTGTTTCATTTATTTCAtttgaaataattgtagagtcacatgaggtttaagttataatacagagaggtcacatatgcctattttctaattggctaccttatttattactattgagttttgagaattctttacatatgctagatgtaagttctttgtcaaata-atggtatgtaaattatttctcccagtctgtaattcattttttcaacttctttacagggtctttccaagtt-taaaaaaaaaaaaaaag--atgtttatttattttaatgaagtccagttttatcactttttccttttgtggattttgtttttgatatgaagccttaaaattctttgcctagcctgagacctcaagagttttcttc-tacttttaaaagtttAATGAatttatttatttatttatttatttatttatttatttatta-tttTGAGACGAGGTTtcacgcaaactgtagtgcagtggtgccgtcattgctcactacagccacgaactactggactgaagtgatccttccgcctcagccacttgagtagtagctgggattacagggaaaagctaccatacacaacttaaagttttataATAttacattttacacttaagcctgtgatttatgtgagctaagttttatataaagtataaatttaagtcaatcttagt
i chlSab2.chr1                 C 0 I 203
e gorGor3.chr10                93750793 41112 - 147764049 I
e rheMac3.chr14                90067774 1010 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=23270.000000
s hg38.chr14_KI270725v1_random    73487 17 +    172810 ttttgtacctgtgaatg
s ponAbe2.chrUn                 2082291 17 +  72422247 ttttgtacctatgaatg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        34308 17 +    112108 ttttgtacctatgaatg
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85838688 17 + 130733371 ttttgtacctatgaatg
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79847797 17 + 123829720 TTTTGTACCTATGAATG
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81241273 17 + 126035930 ttttgtacctatgaatg
i chlSab2.chr1                 I 203 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rheMac3.chr14                90067774 1010 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=403051.000000
s hg38.chr14_KI270725v1_random    73504 232 +    172810 tccaattgctctagcaccatttgttgaaaaagatatccttcctttaaactgattttgcatccttgt---aaaaaaaaatcagatgaatatagtgtggTCTGTCACCTTTTAATAAGATAAAAACATTGGCACTCACCAGATATCGAAGTTTAGAAATTTTTTTAAAGCTAAACTTCTGAAGATAGAATAAAAACACCTTCACATGTCAAATTAGTCAATTTGTATAGGACTAATT
s ponAbe2.chrUn                 2082308 235 +  72422247 ttcaattgctctagcaccatttgttgaaaaagatatccttcctttaaactgattttgcatccttgttaaaaaaaaaaatcagttgactataGCGTGGTCTGTCACCTTTTAATAAGATAAAAACATTAACACTCACCAGATATCGAAGTTTAGAAATTTTTTTAAAGCTAAACTTCTGAAAATAGAATAAAAACACCTTCACGTGTCAAATTAGTCAATTTGTATAGGACTAATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        34325 232 +    112108 tccaattgctctagcaccatttgttgaaaaaggtatccttcctttaaactgtttttgcatccttgt---taaaaaaagtcagttgaatatcgtgtggTCTGTCACCTTTTAATAAGATAAAAACATTAACACTCACCAGATATCGAAGTTTAGAAATTTTTTTAAAGCTAAACTTCTGAAAATAGAATAAAAACACCATCACATGTCGAATTAGTCAATTTGCATAGGACTAATT
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s rheMac3.chr14                90068784 226 + 135538710 tccaattgctctaggaccagttgttgaaaaagatatccttcctttaaactgttcttgcatccttgt---taaaagaaatcagttgaatataatgtggTGTATCACCTTTTAATAAGATAAAAACATTAACACTCACCA------GAAGTTTGGAAATTTTTTTAAAGCCAAACTTCTGAAAATAGAATAAAAACACCTTCATATGTCAAATTAGTCAATTTGCACAGGACTAATT
i rheMac3.chr14                I 1010 I 199
s macFas5.chr14                85838705 232 + 130733371 tccaattgctctaggaccagttgttgaaaaagatatccttcctttaaactgttcttgcatccttgt---taaaagaaatcagttgaatataatgtggTGTATCACCTTTTAATAAGATAAAAACATTAACACTCACCAGATATCGAAGTTTGGAAATTTTTTTAAAGCCAAACTTCTGAAAATAGAATAAAAACACCTTCATATGTCAAATTAGTCAATTTGCACAGGACTAATT
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79847814 232 + 123829720 TCCAATTGCTCTGGGACCAGTTGTTGAAAAAGATATCCTTCCTTTAAACTGTTCTTGCATCCTTGT---TAAAAGAAATCAGTTGAATATAATGTGGTGTATCACCttttaataagataaaaacaTTAACACTCACCAGATATCgaagtttggaaatttttttaaagccaaacttctgaaaatagaataaaaacaccTTCATATGTCAAATTAGTCAATTTGCACAGGactaatt
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81241290 232 + 126035930 tccaattgctctagcaccatttgttgaaaaagatatccttcctttaaactgtttttgcctccttgt---taaaaatattcagttgaatatagtgtggtctatCACCTTTTAATAAGATAAAAACATTAACACTCACCAGATATCGAAGTTTGGAAATTTTTTTAAAGCCAAACTTCTGAAAATAGAATAAAAACACCTTCATATATCAAATTAGTCAATTTGCAAAGGACTAATT
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=306724.000000
s hg38.chr14_KI270725v1_random    73736 268 +    172810 CATTTAAATATATTAAAATACAAAATAATTCAAACCACTAAAGTGATAATACAAGACTATAAATTTAAAGGCTAATTATTAAGTCAAATTGCTGTATTCTACGTGTTAGAGTGAGTTCA-AAAGATCCATTGTATTACTGAATAGGCAAAAGTTTTAATTTCAGAGAATGAAACTGATATATTACTGCCACCTTGTGGATATTCTGTTATTACAGGCTATTATAAAAAGCAATAAGGGTATGTAATCTGTTCTAACAAGAAGCGTTTCC------
s ponAbe2.chrUn                 2082543 272 +  72422247 CatttaaatatattaaaatacaaaataattCAAACCACTAAAGTGATAATACAAGACTATAAATTTAAAGGCTAATTATTAAGTCAAATTGCTGTATTCTACGTGTTAGAGTGAGTTCA-AAAGATCCATTGTATTATTGAATAGGC--AAGTTTTAATTTCAGAGGATGAAACTGATATATTACTGCCACCTTGTGGATATTCTGTTATTACAGGCTATTATAAAAAGCAATGAGGGTATGTAATCTGTTCTAACAAGAAGCATTTCCTTTTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        34557 267 +    112108 CATTTAAGTATATTAAAATACAAACTAATTCAAAACACTAAAGTGATAATACAAAACTATAAATTTAAAGGCTAATTATTAAGTCAAATTGCTGTATTCTACGTGTTGGAGTGAATTCAGAAAGATCCATTATATTATTGAATAGGC--AAGTTTTAATTTCAGAGGATGAAACTGATATATTACTGCCACCTTGTGGATATTCTGTTATTATAGGCTATTATAAAAAGCAATGAGGATATGTAATCTGTTCTAACAAGAAGCATTTCC------
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85838937 263 + 130733371 CATTTAAATATATTAAAATACAAAATAATTCAAGCCACTAAAGTGATAATCCAAGACTATAAATTTAAAGACTAATTATTAAGTCAAATTGCTGTATTCGATGT----------GTTCAGAAAGATCC-TTGTATTATTGAATAGGCAAAAGTTTTAATTTCAGAGGATGAAACTGATATATTACTGCCACCTTGTGGATATTCTCTTATTACAGGCTATTA-AGAAAGCAATGAGGGTATGTTATCTATTCTAACAGATAACATTGTCTTTGTT
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79848046 263 + 123829720 catttaaatatattaaaatacaaaataattcaaGCCACTAAAGTGATAATCCAAGACTATAAATTTAAAGACTAATTGTTAAGTCAAATTGCTGTATTCTATGT----------GTTCAGAAAGATCC-TTGTATTATTGAATAGgcaaaagttttaatttcagaGGATGAAACTGATATATTACTGCCACCTTGTGGATATTCTCTTATTACAGGCTATTA-AGAAAGCAATGAGAGTATGTTATCTATTCTAACAGATAACATTgtctttgtt
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81241522 275 + 126035930 CATTTAAATATATTTAAATACAAAATAATTCAAGGCACTAAAGTGATAATCCAAGACTATAAATGTAAAGACTAATTATTAAGTCAAATTGCTGTATTCTATGTGTTAGAGTGAGTTCAGAAAGATCCATTGTATTATTGAATAGGCAAAAGTTTTAATTTCAGAGAATGAAACTGATATAGTACTGCCACCTTGTGGATATTCTCTTATTACAAGCTATTATAAAAAGCAATGAGGGTATGTTACCTGTTCTAACAGATAACATTGTCTTTGTT
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rheMac3.chr14                90069010 199 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=4037.000000
s hg38.chr14_KI270725v1_random    74004 14 +    172810 TTTTTTTGTCGCTT
s ponAbe2.chrUn                 2082815 14 +  72422247 TTTTTTTGTCGTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        34824 14 +    112108 TTTTTTTGTCATTT
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85839200 14 + 130733371 GTttattattatta
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79848309 14 + 123829720 tattattattatta
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81241797  4 + 126035930 GTTT----------
i chlSab2.chr1                 C 0 C 0
s saiBol1.JH378251                55145 14 +   4405423 tttctttctttctt
i saiBol1.JH378251             N 0 N 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e rheMac3.chr14                90069010 199 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=277499.000000
s hg38.chr14_KI270725v1_random    74018 239 +    172810 ---TTATTATTGttattattacgttttaagttctgagatacatgtacataacgtggaggtttgttacgtaggtatacacatgccatggtggtttactgcacccatcaacccatcatctacattaggtatttctcctaatgctatcact--------ccccgagcctcccacccc-cctgacaggcgccggtatgtgatgttcccctccctgtgtccatgtgttctcattgttcaactc----AAAAGAAAAACAG
s ponAbe2.chrUn                 2082829 239 +  72422247 ---TCGTTATTAttattattacattttaagtcctgagatacatgtacagaacgtggaggtttgttacataggtatacgcatgccatggtggtttactgcacccatcaactcatcatctacattaggtatttctcctaatgctatca-t--------cccccagcctcccaccccacttgacaggccctggtatgtgatgttcccctccctgtgtccatgtgttctcattgttcaactc----AAAAGAAAAACAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        34838 245 +    112108 TTATTATTATTAttattattacattttaagttccgagatacatgtacagaacgtggaggtttgttacataggtatacacgtgccatggtggtttactgcacccaacaacctatcatctacgttaggtattactcctaatactatcact--------cccccagccccccaccc--cctgacaggccccggtgtgtgatgttcgcctccctgtgtccatgtgttctcattgttcaactcaaaaaaaaaaaaaaaag
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85839214 241 + 130733371 ttattattattattactattaCattttaagttctgggatacatgtacagaacatggaggtttgttacataggtatacacatgccatggtgttttgctgcacccatcaacccgtcatctgcattagatatttctcctaatgctatcact--------cccccaaccctccaccc--cctgacaggccccagtgtgtgatgttcccctgcctgtgttcatgtgttcgcactgttcaactc----aaaaataaaaata
i macFas5.chr14                C 0 I 10
s papAnu2.chr14                79848323 241 + 123829720 ttattattattattactattacattttaagttctgggatacatgtacagaacatggaggtttgttacataggtatacacatgccatggtggtttgctgcacccatcaacctgtcatctgcattaggtatttctcctaatgctatcact--------cccccaaccctccaccc--cctgacaggccccagtgtgtgatgttcccctgcctgtgttcatgtgttctcactgttcaactc----aaaaataaaaata
i papAnu2.chr14                C 0 I 16
s chlSab2.chr1                 81241801 246 + 126035930 ---TTATTATTAttattactacattttaagttctgggatacatgtacagaacatggaggtttgttacataggtatacacatgccatagtggtttgctgcacccatcaatccgtcatctacattaggtatttttcctaatactatcactcccccagccccccagccccccaccc--cctgacaggccccggtgtatgatgttcccctccctatgttcatgtgttctcattgttcaactc----AAAAAAAAATTTT
i chlSab2.chr1                 C 0 I 8
e gorGor3.chr10                93750793 41112 - 147764049 I
e rheMac3.chr14                90069010 199 + 135538710 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=759137.000000
s hg38.chr14_KI270725v1_random    74257 460 +    172810 AAGCATTTTCTGCTTTCCTAATTTCTTAAATACAATGCAACTTTATG----------TTTAATTTAA------CTAACTTAA-ttttttgagacaaggtctagctctgttgcccaggctggagtggagtggcgtgaatatggttcagtgaaacctccacctccctggctcaagtgatcctccttcttaagcctctcg-------agtagctaggaccacaggcacgcaccaccatggccagctaatttcttttttattttttatagagatgaggtctcactttgttgtccacgctggtctcaaactcctgggctcaaaggatcctcttgccatggccttccacagcgctgggatttataggtgtgtgccat-ggcaccaggccTAAGCAACTGTAGAGAAGCCTTT--------------------------TTTTCTTTCATAAAAACAGTTGTAGATATTTTCCTTATGGAATTTATTTGTGGTGAA--------------ATATTTTAATAGACAATTTAAT
s ponAbe2.chrUn                 2083068 460 +  72422247 AAGCATTTTCTGCTTTCCCAATTTCTTAAATACAATGCAACTTTATG----------TTTAATTTAA------CTAACTTAA-ttttttgagacaaggtctagctctcttgcctaggctggagtggagtggcgtgaatatggttcagtgaaacctccacctccctggctcaagtgatcctccttcctcagcctcccg-------agtagctaggaccacaggcacgcaccaccacggccagctaatttcttttttattttttgtagagatgaggtctcactttgttgtccacgctggtctcaaactcctgggctcaaaggatcctcttgccatggcctcccacagcgctgggatttataggtgtgtgccat-ggcaccaggccTAAGCAACTGTAGAGAAGCCTTT--------------------------TTTTCTTTCATAAAAACAGTTGTAGATATTTTCCTTATGGAATTTATTTGTGGTGAA--------------ATATTTTAATAGACGGTTTAAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        35083 458 +    112108 aaGCATTTTCTGCTTTCCCAATTTCTTAACTACAATGCAACTTTATG----------TTTAATTTAA------CTAATTTAAtttttttgagacaaggtctagctctgttgcccaggctggagtggagttgcgtgaatatggttcagtgaaacctccacctccctggctcaagtgatcctccttcctcagcctcccg-------agtagcgagggccacaggcgtgcaccacaatagcctgctaatttcttttttctttttt-tagagatgaggtctcactttgttgtccacgctggtctcaaactacagggctcaaaggatcatcctgccatggcctcccaaagtgcttggatttataggtgtgtgccat-agcaccaggACAAAGCAACTT--GAGAAGCCTTT--------------------------TTTTCTTTCATAAAAACAGTTGTAGATATTTTCCTTATGGAATTTATTTGTGATAAT--------------ATCTTTTAATAGATGGTTTAAT
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s rheMac3.chr14                90069209 486 + 135538710 aaGCATTTTCTGCTTTCCCAATTTCTTAAATACAGTGCAATTTTATG----------tttaatttaatttaatttaatttaa-ttttttgagacaaggtctagctctattgcccaggctacagtggagtggcgtgaatatggttcagtgaaacctccacctccctggctcaagtgatcctccttcctcagcctcccgagtagctagtagctaggaccacaggcatgcgccaccatggccagctaatttcttttttattttttgtagagatgagttctcactttgttgtccacact-gtctcaaactcctgggctcaagggatcctcctgccatggcctcccacagtgctgggctttataggtgtgagccat-ggcaccAACCCTATGCAACTTTAGAGAAGCCTTT--------------------------TTTTCTTTCATAAAAACAGTTGTAGATATTTTCCTTATGGGATTTATTTGTGGTAATATAtataatatataatattatattatattatTTAAT
i rheMac3.chr14                I 199 C 0
s macFas5.chr14                85839465 479 + 130733371 aaGCATTTTCTGCTTTCCCAATTTCTTAAATACAGTGCAATTTTATG----------tttaatttaatttaatttaatttaa-ttttttgagacaaggtctagctctattgcccaggctacagtggagtggcgtgaatatggttcagtgaaacctccacctccctggctcaagtgatcctccttcctcagcctcccg-------agtagctaggaccacaggcatgcgccaccatggccagctaatttcttttttattttttgtagagatgagttctcactttgttgtccacact-atctcaaactcctggactcaagggatcctcctgccatggcctcccacagtgctgggctttataggtgtgagccat-ggcaccAACCCTATGCAACTTTAGAGAAGCCTTT--------------------------TTTTCTTTCATAAAAACAGTTGTAGATATTTTCCTTATGGGATTTATTTGTGGTAatatatataatatataatattatattatattatttaat
i macFas5.chr14                I 10 C 0
s papAnu2.chr14                79848580 468 + 123829720 aagcattttctgctttcccaatttcttaaatacagtgcaattttatg--------------------tttaatttaatttaa-ttttttgagacaaggtctagctcTATTG-CCAGGCTACAGTGGAGTGGCGTGAATATGGTTCagtgaaacctccacctccctggctcaagtgatcctccttcctcagcctcccg-------agtagctaggaccacaggcatgcgccaccatggccagctaatttcttttttattttttgtagagatgagttctcactttgttgtccacact-gtctcaaactcctggcctcaagggatcctcctgccgtggcctcccacagtgctgggctttataggtgtgagccat-ggcaccaaCCCTATGCAACTTTAGagaagccttt--------------------------ttttctttcataaaaacaGTTGTAGATATTTTCCTTATGGGATTTATTTGtggtaatatatataatatataatattatattatattatttaat
i papAnu2.chr14                I 16 C 0
s chlSab2.chr1                 81242055 503 + 126035930 AAGCATTTTCTGCTTTCCCAATTTCTTAAATACAATGCAACTTTATGtttaatttaatttaatttaatttaatttaatttaa-ttttttgagacaaggtctagctctattgcccaggctggagtggagtggcatcaatatggttcaatgaaacctccacctccctggctcaagtgatcctccttcctcagcctcccg-------agtagctaggaccacaggcacacaccacgatggccagctaatttcttttttattttttgtagagatgaggtctcactttgttgtccacactggtctcaaactcctgggctcaaaggatcctcctgccgcagactcccaaagtgctgagatttataggtgtgagccatgggcaccaggccTATGCAACTTTAGAGAAGCCTTTTTTTCTTGCATAAAAAGTTGTGGATATTTTCTTTCATAAAAACAGTTGTAGATATTTTCCTTACGGAATTTATTTGTGGCAAT--------------ATATTTTAACAGATGCTTTAAT
i chlSab2.chr1                 I 8 C 0
e gorGor3.chr10                93750793 41112 - 147764049 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=15540.000000
s hg38.chr14_KI270725v1_random    74717 6 +    172810 TTGTTA
s gorGor3.chr9                 48913303 6 + 121947112 TTGTTA
i gorGor3.chr9                 n 41112 I 6268
s ponAbe2.chrUn                 2083528 6 +  72422247 TTGTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        35541 6 +    112108 TTGTTA
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s rheMac3.chr14                90069695 6 + 135538710 TTGTTA
i rheMac3.chr14                C 0 C 0
s macFas5.chr14                85839944 6 + 130733371 ttgtta
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79849048 6 + 123829720 ttgtta
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81242558 6 + 126035930 TTGTTA
i chlSab2.chr1                 C 0 C 0
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=343164.000000
s hg38.chr14_KI270725v1_random    74723 199 +    172810 AATAATTTGTCTCAGATAATAATAATTGATTAATATTAAAACTACAAAACAAGTAGGGTCTTCTTTTTCTATGAAAAATGAAAGTTGATTCTGACATTTATGTAAACATTTTAAATATTCAAAGTATAT------------------------AAATGTgaagtcctatcaagagtaattagacaagagaaagaaataaagggcattcagatcggaaaggagg
s ponAbe2.chrUn                 2083534 195 +  72422247 AATAATTTGTCTCAGataataata----attaatattaaaaCTACAAAACAAGTAGGGTCTTCTTTTTCTATGAAAAATGAAAGTTGATTCTGACATTTATGTAAACATTTTAAATATTCAAAGTATAT------------------------AAATGTgaagtcctatcaagagtaattagacaagagaaagaaataaagggcattcaaattggaaaggagg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        35547 199 +    112108 AATAATTTGTCTCAGATAATAATAATTGATTAATATTAAAACTACAAAACAAATAGTGTCTTCTTTTACTATGAAAAATGAAAGTTGATTCTGACATATATGTAAACATTTTAAAtattcaaagtatat------------------------aaatgtgaagtcctatcaagagtaattagacaagagtaagaaataaagggcattaaaactggaaaggagg
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s rheMac3.chr14                90069701 199 + 135538710 AATAATTTGTCTCAGATAATAATAATTGATTAATATTAAAACTGCAAATCAAGTATGGTCTTCTTTTTCTATGAAAAATGAAAGTTGATTCTGACATTTATGTAAACATTTAAAATATTCAAAGTATAT------------------------AAATGTggagtcctatcaagagtaattagacaagagaaagaaataaagggcattcaaattggaaagaagg
i rheMac3.chr14                C 0 N 0
s macFas5.chr14                85839950 199 + 130733371 aataatttgtctcagataataataattgattaatatTAAAACTGCAAATCAAGTATGGTCTTCTTTTTCTATGAAAAATGAAAGTTGATTCTGACATTTATGTAAACATTTAAAATATTCAAAGTATAT------------------------AAATGTggagtcctatcaagagtaattagacaagagaaagaaataaagggcattcaaattggaaagaagg
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79849054 196 + 123829720 aataatttgtctcagataataataattgattaatattaaAACTGCAAATCAAGTATGG---tctttttctatgaaaaatgaaagtTGATTCtgacatttatgtaaatatttaaaatattcaaagtataT------------------------AAATGTGGAGTCCTATCAAGAgtaattagacaagagaaagaaataaagggcattcaaattggaaggAAGG
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81242564 223 + 126035930 AATAACTTGTCTCAGATAATAATAATTGATTAATATTAAAACTACAAACCAAGCAGGGTCTTCTTTTTCTATGAAAAATGAAAGTTGATTCTGACATTTACATAAACATTTTAAATATTCAAAGTATATTTGAATATTTACAAAGTATATTTGAAATGTgaagtcctatcaagtgtaattagacaagagaaagaaataaagggcattcaaattggaaaggaac
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=373327.000000
s hg38.chr14_KI270725v1_random    74922 299 +    172810 acatcaaattgttcctatttgcagatgacatgatcttatatataggaaaacctgaagactctaccagaaaacttttagaacaaacaaattcaatgaagttgcaagacacaaaactaatacacaaagattggttgcatttatatttatgaacaacaaactcgctgaaaaagaaattaagaaggcaaacccatttacaatactt---------acc---aaaaataa--cccagacataaatgtaaccaaggaggtaaaatgaaaactacaaaacactaatgaaagaaattgaagaggatacaaacaaatgaaaa
s ponAbe2.chrUn                 2083729 302 +  72422247 acatcaaattgttcctatttgcagatgacatgatcttatacataggaaaacctgaagactctaccagaaaacttttagaacaaacaaattcagtgaagttgcaagacacaaaactgatacacaaagattggttgcatttatatatatgaacaacaaactcgctgaaaaagaaattaagaaggcaaacccatttacaatagtt---------accaaaaaaaaaaa--cccagacataaatgtaaccaaggaggtaaaatgaaaactaccaaacactaatgaaagaaattgaagaggatacaaacaaatgaaaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        35746 300 +    112108 acatcaaatttttcctgtttgcagatgacatgatcttatatatagaaaaacctgaagactctaccagaaaacttttagaacaaacaaattcagtgaagttgcaagacacaaaactaatacacaaaaattggtagcatttatatctatgaa-aacaaactagctgaaaaagaaatcaagaatgcaaacctatttagagtagtt---------acc-aaaaaaaaaa--cctagacataaatgtaaccaaggaggtaaaatgaaaacaacaaaacactgatgaaagacattgaagaagatacaaacaaatgaaaa
i nomLeu3.chrUn_GL397743_2     C 0 I 134
s macFas5.chr14                85840149 301 + 130733371 acatcaaattgttcctgtttgcagatgacatgatcttatatataggaaaatctgaagactctaccagaaaacttttagaacaaacaaattcagtgaagttgcaagacacaaaactaatacacaaaaattggtagcatttctatatatgaacaacaaactagctgaaaaagaaatcaagaaggcaaacccatttacaatagtt---------acc-aaaaagaaaa--cctagacataaatgtagccaaggaggtaaaatgaaaactataaaacactgatgaaagaaattgaagaggatacaaacaaatgaaaa
i macFas5.chr14                C 0 C 0
s papAnu2.chr14                79849250 301 + 123829720 AcatcaaattgttcctgtttgcagatgacatgatcttatatataggaAAATCTGAAGACTCTACCAGAAAACTTttagaacaaacaaattcagtgaagttgcaaGACACAAAACTAATACacaaaaattggtagcatttctatatatgaacaacaaactagctgaaaaagaaatcaagaaggcaaacccatttacaatagtt---------acc-aaaaagaaaa--cctagacatAAATGTAGCCAAGGAggtaaaatgaaaactacaaaacactgatgaaagaaattgaagaggatacaaacaaatgaaaa
i papAnu2.chr14                C 0 C 0
s chlSab2.chr1                 81242787 312 + 126035930 acatcaaatttttcctgtttgcagatgacatgatcttatatataggaaaacctgaagactgtaccagaaaacttttagaacaaacaaattcagtgaagctgcaagacacaaaactaacacacaaaagctagtagcatttctatatatgaataataaactagctgaaaaagaaatcaagaagccaaacccatttataatagttacaaaaaaaacc-aaaaaaaaaaaccctagacataaatgtaaccaaggaggtaaaatgaaaactacaaaacactgatgaaagaaattgaagaggatacaaacaaatgaaaa
i chlSab2.chr1                 C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=420533.000000
s hg38.chr14_KI270725v1_random    75221 347 +    172810 gacattcacactcatggatcagaaatatgaatgttgttaaagtgacagtactactcaaaagtaacctacagattcaatgcaatctctatcaaaatacctatgaacattcttcacaaaa-t------aaaaaaaaatccaaagagattttatggaatcaaaaaatatcct-gaatagccaaagccatcctaagcaaaaagaacaaagctggatgtatcatgctaccagacctcagaatatactacaaaactgtagtaaccaaaacatcatggtattggcataaaaacagacacatagacctatggaatagaataaagaacccagaaaatccacatatctcagccaacagatttttt
s ponAbe2.chrUn                 2084031 348 +  72422247 gacagtcatactcatggatcagaaatatgaatgttgttaaagtgacagtactactcaaaagcaacctacagattcaatgcaatctctatcaaaatacctctgaacattgttcacaaaa-t------taaaaaaaatccaaacagacttaatggaatcaaaaaatatcctggaatagccaaagccatcctaagcgaaaagaacaaagctggatgtatcatgctaccagacctcagaatatactacaaaactgtagtaaacaaaacatcatggtattggcataaaaacagacacatagacctatggaatagaataaagaacccaaaaaatccacatatctcagccaacggatttttt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        36180 348 +    112108 gacattcatgctcatggatcagaaacactaatgttgttaaagtggcagtactactcaaaagcaacctacagattcaatgcaatctctatcaaaataccaatgaacattcttcacaaaatt------taaaaaaaatccaaagagattgtatggagtcaaaaaatatcct-gaatagccaaagcaatccttagcaaaaagaacaaagctggatgtatcatgctaccagacttcagaatatactacaaagctgtagtaaccaaaacatcatggtcttggcataaaaacagacacacggacctatggaacagaataaagaacccagaaaatccacatatctcagccaattgatttttt
i nomLeu3.chrUn_GL397743_2     I 134 C 0
s macFas5.chr14                85840450 352 + 130733371 gacattcatgctcatggatcagaaatactaatgttgttaaagtaacagtactactcaaaagcaacctacagattcaatgcaatctctatcaaaataccaatgaaaattcttcccaaaa-t-aaaaaaaaaaaaaatccaaagagattgtatggaatcaaaaaagaccct-gaatagccaaagcaatcctaagcaaaaagaactaagctggacatatcatactaccagacctcagaatatactacaaagctgtagtaaccaaaacatcatgatattggcataaaaacagacacataaacctatgaaatagaataaagaacccagaaaacccacatatctcagccaactgatttttt
i macFas5.chr14                C 0 I 34
s papAnu2.chr14                79849551 348 + 123829720 gacattcatgctcatggatcagaaatACTAATGTTGTTAAAGTAACAGTACTACtcaaaagcaacctacagattcaatgcaatctctatcaaaataccaatgaaaattcttcccaaaa-t-----aaaaaaaaaatccaaagagattttatggaatcaaaaaagaccct-gaatagccaaagcaatcctaagcaaaaagaactaagCTGGACATATCATGCTACCAGACCTcagaatatactacaaagctgtagtaaccaaaacgtcatgatattggcataaaaacagacacataaacctatgaaatagaataaagaacccagaaaacCCACACATctcagccaactgatttttt
i papAnu2.chr14                C 0 I 34
s chlSab2.chr1                 81243099 353 + 126035930 tacattcatgcttatggatcagaaatactaatgtagttaaagtagcagtactactcaaaagcaacctacaggttcaatgcaatctctgtcaaaataccaatgaacattcttcacaaaa-taaaaaaaaaaaaaaatccaaagagattgtgtggaatttaaaaagaccct-gaatagccaaagcaatcctaagcaaaaagaacaaagcaggacatatcatgctaccagacctcagaatatactacaaagctgtagtaaccaaaacatcatggtattggcataaaaagagacacacagacctatgaaatagaaaaaagaacccagaaaacctacatatctcagccaactgatttttt
i chlSab2.chr1                 C 0 N 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=816232.000000
s hg38.chr14_KI270725v1_random    75568 1003 +    172810 acaa-------agatgccaagaacactcattgggaaaaggatagtctcttcaataaatggtgctggaaaaactggatatccatatgcagaagaatgaaactagacctctgcctctcaccctatacaaaaatcaactcaaagtacctcaaatacccaaatataagacccaaaatggtaaagctactagaagaaaacataggggagatccttcaggacattgctctgggaaaatattttatgaataaggcatcaaaagcacaggcaacaaaagaaaaaataaacaaatgggatcacatcaagctaaaaatcttctgcacagcaaaggaaataataaagtgagtgaaaagacaacctacagaatgggagaaaatataa---actcatctggcaggaaattaatatcaagaatatacaaggaattcaaacatatcaacagcaaagaagcacaacaatctaattaaatataaacaaatgctctgaacagacatttctcaaaagaagacatacaaatgaccaacaaatatatgaaaaaatgttcaacaccactaatcagcaaggaaatgctaatcaaagccacagtgaggcatcatcttactccagttaggatggctattatagaagagacaaaaataacaaatgctgacaaagacgtgaagaaaagggaC----------------------------Ctttttttgacagaatctcactctctgtccaggctggagtgcagtggtggtgtaatctggctccctctgcttctagggttcaaatagttctcctccctcagcctcctgagtagctgaagaaaaaggaactcttatgcactgttggtaggaatgtaaattagtgcagccagtatggagaacagtattgaaacacctcaagcaatcccactactgggaatttatccaaaggaaagaaaagcattatattgcagagacatctacatcccccatgtttattgcaacagtgttcacaatagccaagatatggaatcaacctaggtttccaacaacagaggaatggatttttaa
s ponAbe2.chrUn                 2084379 1006 +  72422247 acaa-------agatgccaagaacactcattggggaaaggatagtctcttcaataaatggtgctggaaaaactggatatccatatgcagaagaatgaaactagacccctgcctctcaccctatacaaaaatcaactcaaagtatctcaaatacccaaatataagacccaaaatggtaaagctactagaagaaaacataggggagatccttcaggacatcgctccgggaaaatattttatgaataaggcatcaaaagcacaggcaacaaaaggaaaaat----aaattggatcacatcaagctaaaaagcttctgcacagcaaaggaaataataaagtgagtgaaaagacaacctacagaatgggagaaaatataaactactcatctggcgggaaattaatatcaagaatatacaaggaattcaaacatatcaacagcaaagaagcacaacaatctaattaaatataaacaaatgctctgaacagacatttctcaaaagaagacatacaaattaccaacaaatatatgaaaaaatgttcaacaccactaatcagcaaggaaatgctaatcaaagccacagtgaggtatcgtcttaccccagttaggatggctattatagaagagacaaaaataacaaatgctggcaaagacgtgaagaaaagggaC-----------------------tttttttttttttgacagagtctcactctccatccaggctggagtgcagtggtggtataatctggctccctctgcttctagggttcaaatagttctcctccctcagcctcctgagtagctggagaaaaaggaactcttatgcactgttggtaggaatgtaaattagtgcagccagtatggagaacagtattgaaacccctcaagcaatcccactactgggaatttatccaaaggaaagaaaagcattatattgcagagacatctgcat-cctcatgtttattgcaacagtgttcacaataaccaagatatggaatcaacctaggtttccaacaacacatgaatggatttttaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        36528 1005 +    112108 acaa-------agatgccaagaacactcattggggaaaggatagtctcttcaataaatggtgtatggaaaactggatatccaaatgcagaagaatgaaactagaaccctgcctcccaccctataaaaaaatcaactcaaagtatctcaaatacccaagtataaga-ccaaaatggtaaagctacaagaagaaaacataggggagattcttcaggacattgttctgggaaaagattttatgaataaggcatcaaaagcacaggcaacaaaagaaaaagcaaacaaatgggatcacatcaagctaaacagcttctgcacagcaaaggaaataataaagtgagtgaaaagacaacctacagaatgggagaaaatataaactactcatctggcaggaaattaatatcaagaatatacaaggaattcaaacatatcaatagcaaagaaacccaacaatctaattaaatataagcaaatgctctgaacagacatttctcaaaataagatatacaaatgaccaacaaatagatgaaaaaatgttcaacaccactaatcagcaggaaaatgctaatcaaagccacaatgaggcaacatctcaccccagttcggatggctattatagaagagacaaaaat---aaatgttggcaaagatgtgacgaaaagggaC----------------------ttttttttttttttgacag--tctcattctccatccaagctggagtgcagtggtggtgtaatctggttccctctgcttctagggttcaaatagttctcctgcctcagcctcctgagtagctggggaaaaaagaactctcatacagtgttggtaggaatgtacattagtgcagccagtatggagaacagtattgaaacccctcaagcaatcccactactgggaatttatccaaaggaaagaaaagcattgtattggagagccatcagcat-ccccatgtttattccaacagtattcacaatagccaagatatggaatcaacctaggtttccaacaacagatgaatggattttaaa
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85840836 1035 + 130733371 acaaagatgccagatgccaagaacactcattggggaa-----agtctcttcaataaatagtgctgggaaaactggatatccatctgcagaagaatgaaattagacccctgcctctcaccctatacaaaaatcaactcgaagtgtctcaaatacccaaatataacacccaaaatggtagagctactagaagaaaacataggggagattcttcagggcattggtctgggaaaagattttatgaataagacatcaaaagcacaggcaacaaaagaaaaaataaacaaactggatcacattgagctaaaaagcttctgcacagcaaaggaaataataaagtaagtgaaaagacaatgtacagaaggggagaaaatataaactactcatctggcaggaaattaatatcaagaatatacaaggaattcaaacaaatcaacagcaaagaaacccaacaatctaattaaatataagcaaatgctctgaacagacatttctcaaaagaagacatacaaatcaccaacaaatatatgaaaaaatgttcaacaccactaatcagcaggaaaatgctaatcaaagccacaatgaggcatcatctcaccccagttaggatggctattatagaagagactaaaataacaaatgctggcaaaaatgtgaagaaaagggaCTTTCTTCtttttttttttttttttttttttttttttttttgagtctcactctccgtccagggtggagtgcagtggaggtgtaatcttgctccctctgcctctaggtttcaaatagttctcctgcctctgcctcctgagtagctggggaaaaagtaactcctatacactgttggtaggaatgtaaattagtgcagccactatggagaacagtattgaaacccctcaagcaatcccattactgggaatttatccaaaggaaagaaaagcattatattggagagacatctgcat-ccccatgcttattgcaacactattcataatagccgagatatggaatcaacctaggtttccaacaacagatgaatggattttaaa
i macFas5.chr14                I 34 I 29439
s papAnu2.chr14                79849933 1025 + 123829720 acaaaGATGCCAGATGCCAAGAACACTCATTGGggaa-----agtctcttcaataaatagtgctgggaaaactggatatccatatgcagaagaatgaaattagacccctgcctctcaccctatacaaaaatcaactcgaaGTGTCTCAAATACCCAAATATAACACCCAAAATGGTAGagctgctagaagaaaacataggggagaTTCTTCA-GGCATTGCTctgggaaaagattttatgaataagacatcaaaagcacaggcaacaaaagaaaaaataaacaaattggatctcattgagctaaaaagcttctgcacagc-aaggaaataataaagtaagTG-AAAGAC-AtgtacagaaggggagaaaatataaaCTACTCATCTGGCAGGAAATTAATATCaagaatatacaaggaattcaaacaaatcaacagCAAAGAAACGCAACAATCTAATTAAATATAAGCAAATgctctgaacagacatttctcaaaagaagacatacaaatcaccaacaaatatatgaaaaaatgttcaacaccaCTAATCAGCAGGAAAATGctaatcaaagccacaatgaggcatcatctcaccccagttaggatggctactatagaagagacaaaaataacaaatgctggcaaaaatgtgaagaaaagggactttcttc------tttttttttttttttttttttttttttgagtctcactctccgtccagggtggagtgcagtggaggtGTAATCTTGCTCCCTCTGCCTCTAGGTTTCAAatagttctcctgcctctgcctcctgagtagctggggaaaAAGTAACtcctatacactgttggtaggaatgtaaattagtgcagccactatggagaacagtattgAAACCCctcaagcaatcccattactgggaatttatccaaaggaaagaaaagcattatATTGGAGAGACATCTGCAT-CCCCATgcttattgcaacactattcataatagccgagatatggaatcaacctaggtttccaacaacagatgaatggattttaaa
i papAnu2.chr14                I 34 N 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=326260.000000
s hg38.chr14_KI270725v1_random    76571 1304 +    172810 aatatggtatatatacaccacggaatgctatttagccataaaaaagaataaataaaatcctgtcattctcagcaacttggatggaactggagaatattatgttaagcaaaataagccaggaatagaaatttcaacaccacatgttctcactcacgcagaagct-aaaaaaaagctgatctcatagaagtaaaaagtagaacagaggataatgcaggctgaaaagggtagggagaaaggaggaatagtaagatatttgttaatggatacaaaattacagctaggtaggagtaataagttctagtgttctatagtactgtagatgactatagttaacaatactatattatgtagtttaaaatacctaggagtagtttgaatgttcccaacacaaagaaataataaatgtttgagatgatagatatgctaattaccctgatctgatcaccatctacatgtactgaaacatccccatatagccatgaatatgtataatctttgtcaatttaaaaaTTAAAAAAAAA---AATCTTGGAGAATGCATTTGAAGGACTTGTACTCAAGAAATCAAC-----TTAAGAACCTCAGTCTCCTTGGAATTTGTGTTTTCTAGACCAGTATTTCTCCAAATTAAAGCAAATTTAggctaggcatggtggcccatgtctataatcttagcactttggaaggccgaggcgggcagatcacttgaggtcaggagttcgagaccagctgacccaacattgtgaaacactgtctctactaaaaatacaaaaattagctgggcatgatggcatgtgcctgtaatcccagctactttggaggccgaggcaagataatcgcttgaactggagaggtggaagttgcagtgagctgagattgcaccactgcgctccagcctgggcaacagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaGCAAATTTAGTTCACTTTGGTATTTTGTCAAAATGTTGATTCTTTTAAAGTAAATCTAAAGAATTTAGATGTAGTTGAAGCTTGTCATCTGTTCTTAATTTTTTT-AATAaaaatataatatttcgattcagagtaaatctaaagtgagacctgaagctgctcccaggtgatactgatgctgcttatttttgcccagattttgagtcacaaggTTCTAAATTATTGGTTTGAAGTCCTACATGAGTAATCACTTGGGGAGCTCAATTAACACC------CAGACTAATTATTAATAAACCAGAATCTTCAGTATTAGGCTTCAATCATTAGCAA------ttttttttgacacacagtctcccactgtcgcccaggctg
s ponAbe2.chrUn                 2085385 1321 +  72422247 aatgtggtatatacacaccaaggaatgctatttagccataaaaaagaataaataaaatcctgttattctcagcaacatggatggaactggaggatattatgttaagcaaaataagccaggaatagaaatttcagcaccacatgttctcactcacgcagaagctaaaaaaaaagttgatctcatagaagtaaaaagtagaacagaggatactgcaggctgaaaagggtagggagaaaggaggaatagtaagagatttgttaatggatacaaaattacagctaggtaggagtaataagttctagtgttctatagtactgtagatgactatagttaacaatactatattatgtagtttaaaatacctaggagtagtttgaatgttcccaacacaaagaaataataaatgttcgaaatgatagatatgctaattaccctgatctgatcaccatctacatgtactgaaacatccccatatagccatgaatatgtataatctttgtcaattacaaagtaaaaaaaaaAATTAATCTTGGAGAATGCATCTGAAGAACTTGTACTCAAGAAATCAAC-----TTAAGAACCTGACACTCCTTGGAATTTGTGTTTTCTAGACCAGTACTTCTCCAAATTAAAGCAAATTTAggctgggcatggtggcccatgtctataatctcagcactttggaaggccgaggcgggcggatcacttgaggtcaggagttcgagagcagctgacccaacattgtgaaaccctgtctctactaaaaatacaaaaattagccgggcatgatggcatgtgcctgtaatcccagctactttggaggccgaggcaagataatcgcttgaactggagaggtggaagttgcagtgagccgagattgcaccactgcgctccagcctgggcaacagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaGCAAATTTAGTTCACTTTGGTATTGTGTCAAAATGTAGATTCTTTTAAAGTAAATCTAAAGAATTTAGATGTAGTTGAAGCTTGTAATCTGTTCTTAATTTTTTTAAATAaaaatataatatttagattcagagtaaatctaaagggaggcctgaagctgctcccaggtgatactgatgctgcttatttttgcccagattttgagtcacaaggTTCTAAATTATTGGTTTGAAGTCCTacatgagtaatcacttggggagctcaattaacacccagcaacagactaattattaataaatcagaatcttcagtattaggcttcaatcattggcaAttttttttttttttgacacagagtctcccactgtcacccaggctg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        37533 1314 +    112108 aatgtggtatatatatatgaaggaaggctatttagccataaaaaagaataaataaaatcttgtcattctcagcaacctggatggaactggaggattttatgtcaagcaaaataagccaggaatagaaagttcaacaccacatgttctcactcatgcagaagct-aaaaaaaggttgatctcatagaagtaaaaagtagaagagcgaatactgcaggctgaaaagggtagggagaaaggagggatagtaagagatttgttaatgggtacaaaatgacagttaggtaggagtaataagttctagtgttctatagtactgtagatgactatagttaacaatactatattatgtagtttaaaataccaaggagtagtt----tgttcccaatacaaagaaataataaatgattgagatgatagatatgctaattaccctgatctgatcaccatctacatgtattgaaacatccccatatagccatgaatatgtataaactttgtcaatttataaagtaaaaaaaaa---aATCTTGAAGAATGCATTTGAAGAACTTGTACTCAAGAAATCAACTTATTTTAAGAATTTGAGTCTCCTGGGAATTTGTGTTTTCTAGACCAGTACTTCTCCAAATTAAAGCAAATTTAggttgggcatggtggctcatgcctataatctcagcactttggaaggccgaggctggcagatcacttgaggtcaggagttcgagaccagctgacccaacattgtgaaaccctgtctctactaaaaatacaaaaattagctgggcatgatagcatgcacctgtaatcccagacactttgtaggctgaggcaggataattgcttaaactggagaggtggaagttgcagtgagtcaagattgcaccactacactccagcctgggcaacagagcaagactctgtctc---aaaaaaaaaaaaaaaaaaGCTAATTTAGTTCACTTTGGTATTGTGTCAAAATGTAGATTCTTTTAAAGTAAATCCAAAGAATTTAGATGTAGTTGAAGCTTGTAATCTGTTCTTAATTGTTTC-AATAAAAAtaaaatatttagatttagagtaaatctaaagtgagacctgaagctgctccgaggtgatactgatgctgctcatttttgcccaaattttgaatcacgaggTTCTAAATTAGTGGTTTGAAGTCCTACATGTGTaatcacttggggagctcaattaacacccagcaacagactaattattaataaatcagaaacttcagtattaggcttcaatcattggcatttttttttttttttgaggtggagtctcccactgccacccaggctg
i nomLeu3.chrUn_GL397743_2     C 0 I 33531
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e macFas5.chr14                85841871 29439 + 130733371 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=42273.000000
s hg38.chr14_KI270725v1_random    77875 160 +    172810 aagtcctgaggcCAGAATGAGACTAGGACATGGTTCCTTTgtctaagtaaagtgaggcagacaatggaatacttcagacttcaaattagtatggtaagtgctatgaagagtatgattagagttcattacttacccagaaaagggtcactcagcccagcct
s ponAbe2.chrUn                 2086706 160 +  72422247 aagtcctgaggccaggatGAGACTAGGACATGGTTCCTTTGCCTAagtaaagtgaggcagacaatggaatacttcagacttcaaactggtatggtaagtgctatgaagagtatgattagagttcattatttacccagaaaagggtcactcagcccagcct
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        72378 160 +    112108 aagtcctgaggccagaatgagactaggacatggttcctttgcctaagtaagttgaggcagacaatggaatacttcagacttcaaattagtatggtaagtgctatgaagattatgattagagttcattatttacagagaaaagggtcactcagcccagcct
i nomLeu3.chrUn_GL397743_2     I 33531 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e macFas5.chr14                85841871 29439 + 130733371 I
e panTro4.chrUn_GL393527         149537 4240 +    341619 I

a score=76957.000000
s hg38.chr14_KI270725v1_random    78035 151 +    172810 gggagttagagaaggtttcctgaagtcttgacatgtgagtcatgaaaggacataaggagttaaacacgtgacaaaataagctaagagaattctcaacaaaagacaaaatattgccaaaggcttttaggcatatactatcttagtattattg
s panTro4.chrUn_GL393527         153777 151 +    341619 gggagttagagaaggtttcctgaagtcttgacatgtgagtcatgaaaggacataaggagttaaccacgtgataaaataagctaagagaattctcaacaaaagacaaaatattggcaaaggcttttaggcatatactagcttagtattattg
i panTro4.chrUn_GL393527       I 4240 C 0
s ponAbe2.chrUn                 2086866 151 +  72422247 gggagttagaggtggtttcctgaagtcttgacatgtgagtcatgaaaggacataaggagttaaccacatgacaaaataagctaagagaattctcaacaaaagacaaaatattggcaaaggcttggaggcatatactagcttagtattattg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        72538 151 +    112108 gggagttagacaatgtttcctgaagtcttgacatgtgagtcatgaaaggacataaggagttaaccatgtgacaagataggctaagagaattctcaacaaaagacaaaatattggcaaaggcttggaggcatatactagcttattattattg
i nomLeu3.chrUn_GL397743_2     C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60139514 31264 -  73491278 I
e macFas5.chr14                85841871 29439 + 130733371 I

a score=5859.000000
s hg38.chr14_KI270725v1_random    78186 8 +    172810 gtagaatg
s panTro4.chrUn_GL393527         153928 8 +    341619 ggagaatg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2087017 8 +  72422247 ggagaatg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        72689 8 +    112108 ggagaatg
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s otoGar3.GL873520             60170778 8 -  73491278 gtagagtg
i otoGar3.GL873520             I 31264 I 1237
e gorGor3.chr9                 48913309 6268 + 121947112 I
e macFas5.chr14                85841871 29439 + 130733371 I

a score=427040.000000
s hg38.chr14_KI270725v1_random    78194 813 +    172810 taatgactttctgtatttcaaaagtgtaaaatacaaagtgggccatggtatgagataaaccagtaaatatgttctgggaacatatcatagaagggcgtgtatgctgtcctaaggagcttaaacttcaacttcagttcatgggagccaatgacaagatctgagcaggggaaggatgtggctagaggggcattttagacagacaagatcctctgtggattacacctaggctaagcaacgggttaaagttgttgtcttaagacaatagtccaggtaaaagataataaagttttaaattaggatgttagtaggaatgaggaagacggatggatttcagaaatagtaaggaaatgtattagcaggacttgattagtgattgacttggggaaggaggggaagatagagttcaggatgactccgagactgtctggtgtcggtggctaatgactgaagctattaatagaggtaggtaatgcagaccaaaagcaggcccggggtgagagatgataaatttgaattttaacatgttgagtttggacatccaggatgaaataaccacaaaacatttaaatatacgaatctgaaaaggtaagcatcataagcatatgagctattggtaaaattctgatacttaatgaagtctcgcagggaggcagtacagaggcaagcaatgggctggggataaaacatagggaaatattatttaaataaagatgaaagaaaaggagcccacaaacgaagctgaaaaggcatagtcaaaaaaagaggaTTGCCAAAGTGCCACCTTTGAAGCTCTGCTGTTACACTTTATAAGGA
s panTro4.chrUn_GL393527         153936 813 +    341619 taatgattttctgtatttcaaaagtgtaaaatacaaagtgggccatgatatgagataaaccagtaaatatgttctgggaacagatcacagaagggcgtgtatgctgtcctaaggagcttaaacttcaacttcagttcatgggagccaatgacaagatctgagcaggggaaggatgtggctagaggggcattttagacagacaagatcctctgtggatttcacctaggctaagcaacgggttaaagttgttgtcttaagacaatagtccaggtaaaagataataaagttttaaattaggatgttagtaggaatgaggaagagggatggatttcagaaatactaaggaaatgtattagcaggacttgattagtgattgacttggggaaggaggggaagatagagttcaggatgactccgagactgtctggtgtcggtggctaatgagtgaagctattaatagaggtaggaaatgcagaccaaaagcaggcccggggtgagagatgataaatttgaattttaacatgttgagtttggacatccaggatgaaataaccacaaaacatttaaatatgcgaatctgaaaaggtaagcatcataagcatatgagctattggtaaaattctgatacttaatgaagtctcgcagggaggcagtacagaggcaagcaacgggctggggataaaacatagggaaatattatttaaataaagatgaaagaaaaggagcccacaaaggaagctgaaaagTCATAGTCAAAAAAAGAGGCTTGCCAAAGTGCCACCTTTGAAGCTCTGCTGTTACACTTTATAAGGA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2087025 813 +  72422247 taatgattttctgtatttcaaaagtgtaaaatacaaagtgggccgtgatatgagataaaccagtaactatgttctgggaacagatcacagaagggcgtgtatgctgtcctaaggagcttaaacttcaacttcagttcatgggagccaatgacaagttctgagcaggggaaggatgtggctagaggggcattttagatagacaagttcctctgtagattacacctaggctaagcaacgggttaaagttgttgtcttaagacaatagtccaggtaaaagataataaagttttaaattaggatgttagtaggaatgaggaagagggatggatttcagaaatagtaaggaaatgtattagcaggacttggttagtgattgacttggggaaggaggggaagatagagttcaggatgactctgagactgtctggtgtgggtggctaatgactgaagctattaatagaggtaggaaatgcagaccaaaagtaggcctggggtgagagacgataaatttgaattttaacatgttgaatttggacatccaggatgaaataaccacaaaacatttaaatgtatgaatctgaaaaggtaagcctcataagcatattagctattggtaaaattctgatacttaatgaagtctcgcagggaggcagtacagaggcaagcaatgggctggggataaaacatggggaaatattatttaaataaagatgaaagaaaaggagcccacaaaggaagctgaaaaggcatagtcaAAAAAAGAGGCTTGCCAAAGTGCCACCTTTGAAGCTCTGCTGTTACACTTTATAAGGA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        72697 808 +    112108 taatggttttctgtatttcaaaagtgtaaaatacaaaatgggccatgatatgagataaaccggtaaatatgttctgggaacagatcatagaagggcgtatatgctgtcctaagaagcttaaacttcagcttcagttcatgggcgccaatgacaagtcctgagcagggtaaggatgtggctagaggggcattttagatagacaaggtcctctgtagattacacctaggctaagcaacgggttaaaattgttggcttaagacaatagtccaggtaaaagataataaagtt-----ttaggatgttagtaggaatgaggaagagggatggatttcagaaatagtaaggaaatgtattagtaggacttcactagtgattgacttggggaaggaggggaagatagagttcaggatgactctgagactgtctggtgtgagtggctaatgactgaagctattaatagaggtaggaaatgcagatcaaaagcagtcccagggtgagagatgataaatttgaattttaacatgttgagtttggacatccaggatgaaataaccaccaaacatttaaatatatgaatctgaaaaggtaagtatcatcagcatattagctattggtaaaattctgatacttaatgaagtctcgcagtgagggagtacagaggcaagcaatgggctggggataaaacatggggaaatattatttaaataaagatgaaagaaaaggagcccaccaaggaagctgaataggcatagtcaaaaaaagaggatcaccaaagtgccacctttgaagcTCTGCTGTTACACTTTATAAGGA
i nomLeu3.chrUn_GL397743_2     C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60170786 1237 -  73491278 I
e macFas5.chr14                85841871 29439 + 130733371 I

a score=3311.000000
s hg38.chr14_KI270725v1_random    79007 7 +    172810 AAGTTTT
s panTro4.chrUn_GL393527         154749 7 +    341619 AACTTTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2087838 7 +  72422247 AACTTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        73505 7 +    112108 AACTTCT
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s tarSyr2.KE946445v1             707418 7 -   1202789 GAATTAT
i tarSyr2.KE946445v1           N 0 N 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60170786 1237 -  73491278 I
e macFas5.chr14                85841871 29439 + 130733371 I

a score=15669.000000
s hg38.chr14_KI270725v1_random    79014 29 +    172810 GGTTACCTGGGATTGCATGCATTTATAAA
s panTro4.chrUn_GL393527         154756 29 +    341619 GGTTACCTGGGATTGCATGCATTTATAAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2087845 29 +  72422247 GGTTACCTGGGATTGCATGCATTTATAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        73512 29 +    112108 GGTTACCTGAGATTGCGTGCATTTATAAA
i nomLeu3.chrUn_GL397743_2     C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60170786 1237 -  73491278 I
e macFas5.chr14                85841871 29439 + 130733371 I

a score=162899.000000
s hg38.chr14_KI270725v1_random    79043 190 +    172810 AGTTTCTATTATTAGGAAGACAATAATAATGATAAGGCCCTTTCTCATTGTTGTCAGTGTAATTTATCTATTTAATTATAGAACCTAGTTCCAGGATGCTTAATCTGAAGTATATACTTGG-GGCAAAATGAATTATATCTTAATAATAATCTGGAATTATTCTCTCTAACTTGACATATTTTTAATTCTT
s panTro4.chrUn_GL393527         154785 189 +    341619 AGTTTCTATTATTAGGAAGACAATAATAATGATAAGGCTCTTTCTCATTGTTGTCAGTGTAATTTATCTATTTAATTATAGAACCTAGTTCCAGGATGCTTAATCTGAAGTATATACTTGG-GGCAAAATGAATTATATCTTAATAATAATCTGGAATTTTTCTCTCTAACTTGACATATTTT-AATTCTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2087874 189 +  72422247 AGTTTCTATTATTAGGAAGACAATAATAATTATAAGGCTCTTTCTCATT-TTGTCAGTGTAATTTATCTATTTAATTATAGAACCTAGTTCCAGGATGCTTAATCTGAAGTATATACTTGGAGGCAAAATGAATTATATCTTAATAATAATCTGGAATTTTTCTCTCTAACTTGACATATTTT-AATTCTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        73541 190 +    112108 AGTTTCTATTATTAGGAAGACAGTAATAATGATAAGGCTCTTTCTCATTGTTGTCAGTGTAATTTGTCTATTTAATTATATAACCTAGTTCCAGGATGCTTAATCTGAAGTATATACTTGAAGGCAAAATGAATTATATCTTAATAATAATCTGGAATTTTTCTCTCTAACTTGACATATTTT-AATTCTT
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85871310 190 + 130733371 AGTTTCTATTATTAGGAAGACAATAATAATGATAAGACTCTTTCTCATTGTTGTCAGTGTAATTTATCTATTTAATTATAGAACCTAGTTCCAGGATGCTTAATCTGAAGTATATACTTGGAGGCAAAATGAATTATATCTTAATAATAATCTGGAATTTTTCTCTCCAACTTGACATGTTCT-AATTGTT
i macFas5.chr14                I 29439 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e otoGar3.GL873520             60170786 1237 -  73491278 I

a score=845.000000
s hg38.chr14_KI270725v1_random    79233 1 +    172810 G
s panTro4.chrUn_GL393527         154974 1 +    341619 G
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2088063 1 +  72422247 G
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397743_2        73731 1 +    112108 G
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85871500 1 + 130733371 G
i macFas5.chr14                C 0 C 0
s otoGar3.GL873520             60172023 1 -  73491278 A
i otoGar3.GL873520             I 1237 N 0
e gorGor3.chr9                 48913309 6268 + 121947112 I

a score=172736.000000
s hg38.chr14_KI270725v1_random    79234 199 +    172810 CTAGATTTTCAAAACGTCATACCTCGAACCACCACCAGATGGCTATGAGAATGTTACAAATATTGTGCCACCATATAATGCTTTCTCAGCCCAAGGCATGCCAGAGGTAAAATAAAATGCATTTGTAACCCAAGTCTTTAAATGGTTCTTTTGCTATATAAAACCTGTATAGAGGACTAAAACCACGG-AAATTAGGTGA
s panTro4.chrUn_GL393527         154975 199 +    341619 CTAGATTTTCAAAACGTCATACCTCGAACCACCACCAGATGGCTATGAGAATGTTACAAATATTGTGCCACCATATAATGCTTTCTCAGGCCAAGGCACGCCAGAGGTAAAATAAAATACATTTGTAACCCAAGTCTTTAAATGGTTCTTTTGCTATATAAAACCTGTATAGAGGACGAAAACCAAGG-AAATTAGGTGA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2088064 200 +  72422247 CTGGATTTTCAAAACATCATACCTCGAACCACCACCAGATGGCTATGAGAATGTTACAAATATCGTGCCACCATATAATGCTTTCTCAGCCCAAGGCATGCCAGAGGTAAAATAAAATACATTTGTAACCCAAGTCTTTAAATGGTTCTTTTGCTGTATAAAACCTGTATAGAGGACTAAAACCAAGGAAAATTAGGTGA
i ponAbe2.chrUn                C 0 I 295
s nomLeu3.chrUn_GL397743_2        73732 199 +    112108 CTAGATTTTCGAAACATCATACCTCGAACCACCACAAGATGGCTATGAGAATGTTACAAATATTGTGCCACCATATAATGCTTTCTCAGCCCGAGGCATGCCAGAGGTAAAATAAAATACATTTGTAATCCAAGTCTTTAAATGGTTCTTTTGTTATGTAAAACCTGTATAGAGGACTAAAACCAAGG-AAATTAGGTGA
i nomLeu3.chrUn_GL397743_2     C 0 C 0
s macFas5.chr14                85871501 199 + 130733371 CTAGATTTTCAAAACATCATACTTCGAACCAACACCAGATGGCTACGAGAATGTTACAAATATTGTTCCACCATATAATGCTTTCTCAGCCCAAGGCATGCCAGAGGTAAAATAAAATACATTTGTAATCCAAGTCTTTAAATGATTCTTTTGCTATATAAAATCTGTATAGAGGACTAAAACCAAGG-AAATTAGGTGA
i macFas5.chr14                C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I

a score=194057.000000
s hg38.chr14_KI270725v1_random    79433 248 +    172810 ATCATTCATGCGGATTCATTGTTTGATATTCAGTACTATGAAAACCTCATCCCTCAAATTTAAAAA-----ATTATAATAAAATAGAAAAGAACACCAGACAGAGAAAAAAGAAACAAAACAAACACATTAAAAACTGACCCTGCTGAAGCAGATGCCACTCTTTGAAATAACAAAGAAACTGCTGAACACGCCTTTAATTCAGTGAGGCAGTAGGTGTTTtt--------ttgtttgtt------tttgtttcgttttgttttttt
s panTro4.chrUn_GL393527         155174 256 +    341619 ATCATTCATGAGGATTCATTGTTTGATATTCAGTACTATGAAAACCTCATCCCTCaaatttaaaaa-----attataataaaataGAAAAGAACACCAGACAGAGAAAAAAGAAACAAAACAAATACATTAAAAACTGACCCTGCTGAAGCAGATGCCACTCTTTGAAATAACAAAGAAACTGCTGAACACGCCTTTAATTCAGTGAGGCAGTAGGTGTTTTTCTGTTTGTTTGtttgtt------tttgtttcgttttgttttttt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2088559 252 +  72422247 ATCATTCATGCGGATTCATTGTTTGATATTCAGTACTATGAAAACCTCATCCCTCaaatttaaaaa-----attataataaaataGAAAAGAACACCAGACAGAGAAAAAAGAAACAAAACAAATACATTAAAAACTGACCCTACTGAAGCAGATGCCACTCTTTGAAATAACGAAGAAACTGCTGAACATGCCTTTAATTCAGTGAGGCAGTAGGTGTTTTT----TTGTTTGtttgtt------tttgtttcattttgttttttt
i ponAbe2.chrUn                I 295 C 0
s nomLeu3.chrUn_GL397743_2        73931 255 +    112108 ATCATTCATGCGGGTTCATTGTTTGATATTCAGTACTATGAAAACCTCATCCCTCaaattaaaaaatatataataaaataaaatagaagagaacaccagacagagaaaaaagaaacaaaacaaatacattaaaaACTGACCCTGCTGAAAGAGTTGCCACTCTCTGAAATGCC----AAACTGCTGAACATGCCT----TTCAGTGAGGCAGTAGGTGTTTTT----TTGTTTGTTTGtttttatatttgttttgttttgtttcttt
i nomLeu3.chrUn_GL397743_2     C 0 n 0
s macFas5.chr14                85871700 243 + 130733371 ATCATACATGCTGATCCATTGTTTGATATTCAGTACTATGAAAACCTCATCCCCCaattaaaaaaa-----attataataaaatagaaaagaacac----cagagaaaaaagaaacaaaacaaatacattaaaaACTGATCCTGCTGAAGCAGATGCCACTCTTTGAAATAACAAAGAAACTGCTGAACACGCTTTTAATTCAGTGAGGCAGTAGGTGGTTTT---------TGtttgtt------tttgttttgttttgttttttt
i macFas5.chr14                C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I

a score=132450.000000
s hg38.chr14_KI270725v1_random    79681 278 +    172810 gagatggagtttcgctcttgtcacccaggctggagtgtagtggcaaaatctgggctcactgcaacctccgcctcccaggtccaagcaattctcttgcctcagcctcctgagtagctgggatcacaggtgcacaccaccacaccctgctaattttgtatttt---tttt-agtggaggcgaggtttctctatgttggtcaggctagtctcaaactcccaaactcaggtgatcggctcacctcggcctcccaaagtgctgggattacaggcgtgagccaccacg
s panTro4.chrUn_GL393527         155430 279 +    341619 gagacggagtttcactcttgtcacccaggctggagcatagtggcaccatctgggctcactgcaacctccgcctcctaggtccaagaaattctcttgcctcagcctcctgagtagctgggatcacaggtgcacaccaccacaccctgctaattttgtatttt---tttttagtggaagcggggtttctctatgttggtcaggctagtctcgaactcccaacctcaggtgatctgctcacctcggcctcccaaagtgctgggattacaggcgtgagccaccacg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2088811 277 +  72422247 gagatggaatttcgctcttgtcacccaggctggagtgtagtggcacaatctcagctcactgcaacctccgcatcccaggtccaagcaattctcttgcctcagcctcctgagtagctgggagcacaggtgcacaccaccacgccct-ctaattttgtatttt---tttt-agtggaggcggggtttctctatgttggtcaggttagtctcgaactcccaacctcaggtgatctgctcactttggcctcccaaagtgctgggattacaggcatgagccactgcg
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr14                85871943 281 + 130733371 gagacagagtttcgatgttgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaacctctgcctcccgggttcaagcaattatcttgcctcagcctcctgagtagctgtgaccacagctgcacgccgctatgcccggctaattttgtactttttgtttt-agtggagacagggtttctctatgttgttcaggctagtctcgaactcccaacctcaggtgatccgctctcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcg
i macFas5.chr14                C 0 N 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=664.000000
s hg38.chr14_KI270725v1_random    79959 4 +    172810 TTAT
s panTro4.chrUn_GL393527         155709 4 +    341619 TTAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089088 4 +  72422247 TTAA
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=167810.000000
s hg38.chr14_KI270725v1_random    79963 221 +    172810 AAAGGGAAACTTCCTATTTGCCCTCTAAATGTTTGCAGAAAATGAATGGACAAAACATAAATTAATAGAAGAAAGAGG---CAAAAAAAAATTCTGTAAAATGTAGGGGAAAAATCacagggtctc------tctgttacccagcatgaaatgcagtggtgtgatcatggctcattgcaaccttgaattctgaagcacaagtgattctcccccctaagcctatggtgtag
s panTro4.chrUn_GL393527         155713 222 +    341619 aaagggaaacttcctatttgccctctaaaggtttgcagaaaatgaatggacaaaacataaattaatagaagaaagag----taaaaaaaAAATCTGTAAAATATAGGGGAAAAATCacagggtttc----actccgttacacagcatgaagtgcagtggtgtgatcatggctcattgcaaccttgaattctcaagcacaagtgattctcccccctgagcttatggagtag
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089092 226 +  72422247 aaagggaaacttcctatttgccctctaaaggtttgcagaaaatgaatggacaaaacgtaaattaatagaagaaagaggcaaaaaaaAAAAAATCTGTAAAATGTAGGGGAAAAATCacagggtctc----actcagttacccagcatgaagtgcagtggtgtgatcacggctcattgcaaccttgaattctcaagcacaagtgattctcccccctaagcctatggagtag
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          25955 224 -     44534 aaagggaaatttcctatttgccctctaaaggtttgcagaaaatgaatggacaaaacacaaattaatagaagaaagaggc------aaaaaattCTGCAAAAAGCAGGGGAAAAATCacagggtctcactcactcggttgcccagcatgaagtgcagtggtatgatcgtggctcattgtaaccttgagttctcaaatgcaaacagttctccaacctcagcctacggagtag
i rheMac3.chrUn_JH290316       N 0 C 0
s chlSab2.chr14                90911348 225 - 107702431 aaagggaaatttcctatttgccctctaaaggtttgcagaaaatgaatgaacaaaacacaaattaatagaagaaagaggc-----aaaaaaattCTGTAAAAAGCAGGGGAAACATCacagggtctcactcactcggttgcccagcatgaagtgcagtggtgtgatcgtggctcattttaaccttgagttctcaagtgcaaacagttctccaacctcagcctatggagtag
i chlSab2.chr14                N 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=66449.000000
s hg38.chr14_KI270725v1_random    80184 53 +    172810 ctgggatcacaggggcatgccaccatgcACACATACATGGTTATTTGCTGGAG
s panTro4.chrUn_GL393527         155935 53 +    341619 ctgggatcacagggacatgccaccatgcccACATACATGGGTATTTGCTGGAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089318 53 +  72422247 ctgggatcacaggggcgcgccaccatgcccACATACATGGGTATTTGCTGGAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26179 53 -     44534 ctgggataacagggatgtgccaccatgcccACATACATGGGTATTTGCCGGAG
i rheMac3.chrUn_JH290316       C 0 C 0
s papAnu2.chr13                23356294 53 - 128036923 CTGGGAtaacaggggtgtgccaccatgcccacataCATGGGTGTTTGCTGGAG
i papAnu2.chr13                N 0 C 0
s chlSab2.chr14                90911573 53 - 107702431 ctgggatcacaggggtgtgccaccatgcccACATACATGGGTATTTGCTGGAG
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=113363.000000
s hg38.chr14_KI270725v1_random    80237 67 +    172810 AGGAGATGGAGACTCTCTGTCCTGGATGTGAG-ACAGTTGGCTGGCATCTGGGTAAGGATGACATTAC
s panTro4.chrUn_GL393527         155988 67 +    341619 AGGAGATGGAGACTCTCTGTCCTGGATGTGAG-ACGGGTGGCTGGCATCTGGGTAAGGATGACATTCC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089371 67 +  72422247 AGGAGATGGAGACTCTCTGTCCTGGATGTGAG-ACAGGTGGCTGGCATCTGGGTAAGGATGACATTCC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26232 67 -     44534 AGGAGATGGAGACTCTCTGTCCTGGATGTGAG-ACAGGTGGCTGGCATCTGGGTAAGGATGACGTTCC
i rheMac3.chrUn_JH290316       C 0 C 0
s papAnu2.chr13                23356347 67 - 128036923 AGGAGATGGAGACTCTctgtcctggatgtgag-acaggTGGCTGGCATCTGGGTAAGGATGACGTTCC
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90911626 67 - 107702431 AGGAGATGGAGACTCTCTGTCCTGGATGTGAG-ACAGGTGGGTGGCATCTGGGTAAGGATGATGTTCC
i chlSab2.chr14                C 0 C 0
s tarSyr2.ABRT02317507v1           2931 68 +      4725 AGGAGATGGAGACTCTCTCTCTTGGATGTGAGAATGGGATGCTGGTGTCTGGGTCTAGATGATGTCCC
i tarSyr2.ABRT02317507v1       N 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=2800.000000
s hg38.chr14_KI270725v1_random       80304 1 +    172810 C
s panTro4.chrUn_GL393527            156055 1 +    341619 C
i panTro4.chrUn_GL393527          C 0 C 0
s ponAbe2.chrUn                    2089438 1 +  72422247 C
i ponAbe2.chrUn                   C 0 C 0
s rheMac3.chrUn_JH290316             26299 1 -     44534 C
i rheMac3.chrUn_JH290316          C 0 C 0
s papAnu2.chr13                   23356414 1 - 128036923 C
i papAnu2.chr13                   C 0 C 0
s chlSab2.chr14                   90911693 1 - 107702431 C
i chlSab2.chr14                   C 0 C 0
s tarSyr2.ABRT02317507v1              2999 1 +      4725 C
i tarSyr2.ABRT02317507v1          C 0 C 0
s tupBel1.scaffold_108277.1-46376    31809 1 -     46376 C
i tupBel1.scaffold_108277.1-46376 N 0 N 0
e gorGor3.chr9                    48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2           74186 0 +    112108 I

a score=101646.000000
s hg38.chr14_KI270725v1_random    80305 61 +    172810 --TCATTGCTAAAGAGTAAAAGAGGAAAGTGTCATGGATAGTGCAA-GCAGGGACATGCCCTGA
s panTro4.chrUn_GL393527         156056 61 +    341619 --TCATTGCTAAAGAGTAAAAGAGGAAAGTGCCATGGATAGTGCAA-GCAGGGACATGCCCTGA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089439 61 +  72422247 --TCATTGCTAAAGAGTAAAAGAGGAAAGTGTCATGGATAGTGCAA-GCAGGGACATGCCCTGA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26300 62 -     44534 --TCATTGCTAAAGAGTAAAAGAGGAAAGTGTCATTGATAGTGCAAGGCAGGGACACGCCCtga
i rheMac3.chrUn_JH290316       C 0 C 0
s papAnu2.chr13                23356415 62 - 128036923 --TCATTGCTAAAGAGTAAAAGAGGAAAGTGTCATTGATAGTGCAAGGCAGGGACACGCCCTGA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90911694 62 - 107702431 --TCATTGCTAAAGAGTAAAAGAGGAAATTGTCATTGATAGTGCAAGGCAGGGACACGCCCtga
i chlSab2.chr14                C 0 C 0
s tarSyr2.ABRT02317507v1           3000 64 +      4725 ATTCACTGCTAAAGGATAAAAGAGGAAAGTGTCATTGATAGTGCTCAGCAAGAACATGCTCCAA
i tarSyr2.ABRT02317507v1       C 0 N 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=2345.000000
s hg38.chr14_KI270725v1_random    80366 2 +    172810 CC
s panTro4.chrUn_GL393527         156117 2 +    341619 CT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089500 2 +  72422247 CC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26362 2 -     44534 cc
i rheMac3.chrUn_JH290316       C 0 C 0
s papAnu2.chr13                23356477 2 - 128036923 CC
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90911756 2 - 107702431 cc
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=52401.000000
s hg38.chr14_KI270725v1_random    80368 35 +    172810 TAGTGAGGTCCAGAGGCTTATATTGTCCTTCATAG
s panTro4.chrUn_GL393527         156119 35 +    341619 TCGTGAGGTCCAGAGGCTTACATTGTCCTTCATAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089502 34 +  72422247 TAGTGAGGTCCAGAGGCTTATA-TGTCCATCAAAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26364 34 -     44534 cagtgaggtccagaggcttata-cgtccttcatag
i rheMac3.chrUn_JH290316       C 0 C 0
s papAnu2.chr13                23356479 34 - 128036923 CAGTGAGGTCCAGAGGCTTATA-TGTCCTTCATAG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90911758 34 - 107702431 cagtgaggtccagaggcttata-cgtccttcatag
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90629915 34 - 108792865 tagtaaggtccagatggttata-tgtccttcacag
i calJac3.chr14                N 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=4480.000000
s hg38.chr14_KI270725v1_random        80403 3 +    172810 GGG-
s panTro4.chrUn_GL393527             156154 3 +    341619 GGG-
i panTro4.chrUn_GL393527           C 0 C 0
s ponAbe2.chrUn                     2089536 3 +  72422247 GGG-
i ponAbe2.chrUn                    C 0 C 0
s rheMac3.chrUn_JH290316              26398 3 -     44534 ggg-
i rheMac3.chrUn_JH290316           C 0 C 0
s papAnu2.chr13                    23356513 3 - 128036923 GGG-
i papAnu2.chr13                    C 0 C 0
s chlSab2.chr14                    90911792 3 - 107702431 ggg-
i chlSab2.chr14                    C 0 C 0
s calJac3.chr14                    90629949 3 - 108792865 ggg-
i calJac3.chr14                    C 0 C 0
s tupBel1.scaffold_114909.1-343008   251869 3 +    343008 -GGC
i tupBel1.scaffold_114909.1-343008 N 0 N 0
e gorGor3.chr9                     48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2            74186 0 +    112108 I

a score=658951.000000
s hg38.chr14_KI270725v1_random    80406 421 +    172810 AGTGGGAAGAAGCGAGTGTAGGCAACCCAGGGGAAATAAATGACCTAAAATAAAAGAAATAGATCATCAGAAGTGTAGAtgtattagtcagggttctctagagtgacagaattaaaggactatatacatatatatat--gaaagggagtgacatggttaataatgagtgtcaacttgataggattgagagatatgaagtattgatccagggtgtgtctgtgagagtgttgccgaaagagattaacatttgagtcagtgggctggggaaggcaga-cccacccttaatctggtgggcacaatctaatctgctgccagcaaatataaatcaggcagaaaaatttgaaaaggagagactggcctagcctcccagcctacatctttctcccatgctggtttcttcctgccctcaaacattggactcca
s panTro4.chrUn_GL393527         156157 423 +    341619 AGTGGGAAGAAGTGAGTGTAGGCAACCCAGGGGAAATAAATGACCTAAAATAAAAGAAATAGATCATCAGAAGTGTAGAtgtattagtcagggttctctagagtgacagaattaaaggactatatacatatatatatatgaaggggagtgagatggttaataatgagtgtcaacttgataggattgagggatatgaagtattgacccagggtgtgtctgtgagagtgttgacgaaagagattaacatttgagtcagtgggctggggaaggcaga-ctcacccttaatctggtgggcacaatctaatctgctgccagcaaatataaagcaggcagaaaaatttgaaaaggagagactggcctagcatcccagcctacatctttctcccatgctggtttcttcctgccctcaaacattggactcca
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089539 421 +  72422247 AGTGGGAAGAAGCGAGTGTAGGCAACCCAGGGGAAATAAATGACCTAAAATAAAAGAAATAGGTCATCAGAAGTGTAGAtgtattagtcagggttctctagagtgacagaattaaaggattatatacatatatatat--gaaggggagtgagatggttaataatgagtgtcaacttgataggattgagggatacgaagtattgatccagggtgtgtctgtgagagtgttgccgaaagagattaacatttgagtcagtgggctggggaaggcaga-cctacccttaatctggtgggcacaatctaatctgctgccagcaaatataaagcaggcagaaaaatttgaaaaggagagactggcctagcctcccagcctacatctttctcccatgctggttgcttcctgccctcaaacattggactcca
i ponAbe2.chrUn                C 0 I 24
s rheMac3.chrUn_JH290316          26401 419 -     44534 agtgagaagaagagagtgtaggcaACCCAGGGGAAACAAGTGACCTAAAATAAAGGAAAGAGGTCATCAAAAGTGTAGAtgtattagtcagggttctctaaagtgacagaattaaaggactatgcacataaatatat--gaa-gggagtgtgatggttaatagtgagtgtcaacttgataggattgagggacacaaagtatggatcctgggtgtttctgtgagggtgttgccaaaagaggttaacttttgagtccgtgggctggggaaggcaga-cccacccgtaatctggtaggcacaatctaattagctgccagcaaatataatgcaggca-gaaagtttgaaaaagagagactggcctagtctcccagcctacatctttctcccatgctggatgctttttgccctcgaacattggactcca
i rheMac3.chrUn_JH290316       C 0 I 24
s papAnu2.chr13                23356516 422 - 128036923 GGTGAGAAGAAGAGAGTGTAGGCAACCCAGGGGAAAAAAGttacctaaaataaaagaaagaggtcaTCAAAAGTGTAgatgtattagtcagagttctctagagtGACAGAATTAAAGGACTATGCACATAAATATAT--GAAGGGGAGTGTGATGGTTCATAGTGAGTGTCAACTTGATAGGATTGAGGGACACAAAGTAtggatcctgggtgtgtctgtgagggtgttgtcaaaagAGATTAACTTTTGAGTccgtgggctggggaaggcagaccccaCCCATAATccggtgggcacaatctaatcagctgccagcaaatacaACGCAGGCAGGAAAGTTtgaaaaagagagactggcctagtctcccagcctacatctttctcccatgctggatgcttttTGCTCTAGAACATTGGACTCCA
i papAnu2.chr13                C 0 I 24
s chlSab2.chr14                90911795 421 - 107702431 agtgagaagaagagagtgtaggcaACCCAGGGGAAACAAGTGACCTAAAATAAAGGAAAGAGGTCATCAAAAGTGTAGAtgtattagtcagggttctctagagtgacagaattaaaggactatgcacataaatatat--gaa-gggagtgtgatggttaatagtgagtgtcaatttgataggattgagggacacaaagtatggatcctgggtgtgtctgtgagggtgttgccacaagaggttaacttttgagtccgtgggctggggaaggcagactccacccataatctggtgggcacaatctaatcagctgctggcaaatataacgcaggcagaaaagtttgaaaaagagagactggcctagtctcccaggctacatctttctcccatgctggatgctttttgccctagaacattggactcca
i chlSab2.chr14                C 0 I 24
s calJac3.chr14                90629952 390 - 108792865 agtggaaagaggggagtatagggaacccagggcaaataaatgaACTAAAATAAAAGAAATGGGTCATCAAGTGAGTATATATAT-------AGTCCCTTG---------------------ATGTATATATACATAT--AAATGGAAGtgtgatggttaatattgagtgtcaacttgatagaattgaaggataccaagtattgatcatgggagtgtctgtgagggtgtcgccaaaagagataaacatttgagtcagtgggctggggaaggcaga-tccacctctaatctgttgggcatgatctaatccactgccagcaaatataaagcaggcagatag---tgaaaaggagagactggcctagcctcccagcctacatctttctccaattctggacacttcctgccctcaaacatcagactcca
i calJac3.chr14                C 0 I 24
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=36429.000000
s hg38.chr14_KI270725v1_random    80827 15 +    172810 tggctctcctttctc
s panTro4.chrUn_GL393527         156580 15 +    341619 tggctctcctttctc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089984 15 +  72422247 tggctctcctttctc
i ponAbe2.chrUn                I 24 C 0
s rheMac3.chrUn_JH290316          26844 15 -     44534 tggctctcctttctc
i rheMac3.chrUn_JH290316       I 24 C 0
s macFas5.chr10                61750322 15 -  96509753 tggctctcctttctc
i macFas5.chr10                N 0 C 0
s papAnu2.chr13                23356962 15 - 128036923 CGGCTCTCCTTTCTC
i papAnu2.chr13                I 24 C 0
s chlSab2.chr14                90912240 15 - 107702431 cagctctcctttctc
i chlSab2.chr14                I 24 C 0
s calJac3.chr14                90630366 15 - 108792865 tggctctccttgctc
i calJac3.chr14                I 24 I 1
e gorGor3.chr9                 48913309 6268 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=75841.000000
s hg38.chr14_KI270725v1_random    80842 50 +    172810 atcagtttgcagacagcccattgt------------------gtaacttatgatcctgtaagttaata
s panTro4.chrUn_GL393527         156595 50 +    341619 atcagtttgcagacagcccattgt------------------gtaacttatgatcctgtaagttaata
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2089999 50 +  72422247 atcagtttgcagacagcccattgt------------------gtaacttatgatcctgtaagttaata
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26859 68 -     44534 atagatttgcagacagcccattgcagatggcctatgattgtgggaccttgtgattgtgtaagttaata
i rheMac3.chrUn_JH290316       C 0 I 38
s macFas5.chr10                61750337 50 -  96509753 atagatttgcagacagcccattgt------------------ggaacttatgatcctttaagttagta
i macFas5.chr10                C 0 I 13
s papAnu2.chr13                23356977 50 - 128036923 ATGGATTTGCAGACAGCCCATTGT------------------GGAACTTATGATCCTTTAAGTTAGTA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90912255 50 - 107702431 atggatttgcagacagcccattgt------------------ggaacttatgatcctttaagttagta
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e calJac3.chr14                90630381  1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=10890.000000
s hg38.chr14_KI270725v1_random    80892 18 +    172810 aactcccctttataaata
s panTro4.chrUn_GL393527         156645 18 +    341619 aactcccctttataaata
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2090049 18 +  72422247 aactcccctttataaata
i ponAbe2.chrUn                C 0 C 0
s papAnu2.chr13                23357027 18 - 128036923 aacatccatatatatata
i papAnu2.chr13                C 0 I 20
s chlSab2.chr14                90912305 18 - 107702431 aacatccatatatatata
i chlSab2.chr14                C 0 T 93570
e gorGor3.chr9                 48913309 6268 + 121947112 I
e rheMac3.chrUn_JH290316          26927 38 -     44534 I
e calJac3.chr14                90630381  1 - 108792865 I
e macFas5.chr10                61750387 13 -  96509753 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=36625.000000
s hg38.chr14_KI270725v1_random    80910 52 +    172810 aatatatATAtgtgtgtgt--gtgtgtgcatatatatatgtatgtgtgtgtgtA
s panTro4.chrUn_GL393527         156663 54 +    341619 aatatatATATATGTGTGTCTGTGTGTGTGCatatatatgtatgtgtatgtgta
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2090067 50 +  72422247 aatatatAtgtgtgtgt----gtgtgtgcatatgtatacgtatgtgtgtgtgta
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr10                61750400 49 -  96509753 ---atatatgtatctatgt--atctatgtatctatctatctatgtgtctatcta
i macFas5.chr10                I 13 I 18
s papAnu2.chr13                23357065 52 - 128036923 tatatatatgtgtgtgtgt--gtgtgtgtgtgtatctatctatctatctatcta
i papAnu2.chr13                I 20 I 14
s chlSab2.chr14                90818753 52 - 107702431 CACACATAGGGgtgtgtgc--ttgtgtgtgtatgtatatgtatgtgtgcatata
i chlSab2.chr14                T 93570 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e rheMac3.chrUn_JH290316          26927 38 -     44534 I
e calJac3.chr14                90630381  1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=-17596.000000
s hg38.chr14_KI270725v1_random    80962  3 +    172810 T-----------------------------------At-
s panTro4.chrUn_GL393527         156717 38 +    341619 tgtatatgcatatatatatatatatatatatatataat-
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2090117  5 +  72422247 tgtAt----------------------------------
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26965  1 -     44534 --------------------------------------t
i rheMac3.chrUn_JH290316       I 38 C 0
s macFas5.chr10                61750467  1 -  96509753 --------------------------------------t
i macFas5.chr10                I 18 C 0
s papAnu2.chr13                23357131  1 - 128036923 --------------------------------------t
i papAnu2.chr13                I 14 C 0
s chlSab2.chr14                90818805 29 - 107702431 ----------tatatatacacatatatatatataCAAAC
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 48913309 6268 + 121947112 I
e calJac3.chr14                90630381  1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=11983.000000
s hg38.chr14_KI270725v1_random    80965 6 +    172810 atatat
s panTro4.chrUn_GL393527         156755 6 +    341619 atatat
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 48919577 6 + 121947112 atatat
i gorGor3.chr9                 I 6268 I 3713
s ponAbe2.chrUn                 2090122 6 +  72422247 atatat
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26966 6 -     44534 atatat
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61750468 6 -  96509753 atctat
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23357132 6 - 128036923 atctat
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90818834 6 - 107702431 acatat
i chlSab2.chr14                C 0 C 0
e calJac3.chr14                90630381 1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=10025.000000
s hg38.chr14_KI270725v1_random    80971 9 +    172810 gtatatatc
s panTro4.chrUn_GL393527         156761 9 +    341619 atatataac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2090128 9 +  72422247 gtatatatc
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          26972 9 -     44534 atagatatc
i rheMac3.chrUn_JH290316       C 0 I 2
s macFas5.chr10                61750474 9 -  96509753 ctatctatc
i macFas5.chr10                C 0 I 2
s papAnu2.chr13                23357138 9 - 128036923 ctatctatc
i papAnu2.chr13                C 0 I 2
s chlSab2.chr14                90818840 9 - 107702431 atatatatc
i chlSab2.chr14                C 0 I 93558
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381 1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=223014.000000
s hg38.chr14_KI270725v1_random    80980 128 +    172810 ctgttagttctgtccctctagatgtcactgtctaatacaggaagtttattaagtattaactcacacaatcaccaagtctcacaataggccatctgctggatgaggagcaaaaagagccagccagagtt
s panTro4.chrUn_GL393527         156770 128 +    341619 ctgttagttctgtccctctagatgtcactggctaatacaggaagtttattaagtattaactcacacaatcaccaagactcacaataggccatctgctggatgaggagcaaaaagagccagccagagtt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2090137 128 +  72422247 ctgtcagttctgtccctctagatgtcactggctaatacaggaagtttattaagtattaactcacacaatcaccgagtctcataataggccatctgctggatgaggagcaaaaagagccagccagagtT
i ponAbe2.chrUn                C 0 M 622
s rheMac3.chrUn_JH290316          26983 128 -     44534 ctgttagttctgtccctctagatgtcactcactaatgcaggaagtttattaagtattaactcactcaatcaccaggtctcacaatatgccatctcctggctgaggagcaaaaagagctggccagagtt
i rheMac3.chrUn_JH290316       I 2 C 0
s macFas5.chr10                61750485 128 -  96509753 ctgttagttctgtccctctagaggtcactcactaatacaggaagtttattaagtattaactcactcaatcaccaggtctcacaatatgccatctcctggctgaggagcaaaaagagctggccagagtt
i macFas5.chr10                I 2 C 0
s papAnu2.chr13                23357149 128 - 128036923 ctgttagttctgtccctctagatgTCACCCTCTAATACaggaagtttattaagtattaactcactcAATCACCAGGTCTCACAATAGGCCATCTCCTGGCTGAGGAGCAAAAAGAGCCGACcagagtt
i papAnu2.chr13                I 2 C 0
s chlSab2.chr14                90912407 128 - 107702431 ctgttagttctttgcctctagatgtcactcactaatacaggaagtttattaagtattaactcactcaatcaccaggtctcacaataggccatctcctgggtgaagagcaaaaagagcctaccagagtt
i chlSab2.chr14                I 93558 C 0
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381   1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=359813.000000
s hg38.chr14_KI270725v1_random    81108 296 +    172810 ccaaaactgaagaacttggagtccatgttcgagggcaagaagcatccagcatgggagaaagatgtaggctgggaggcgaggcccgtctcttttcacatttttctgcctgcttatagtatggctgggttggcagctgattggattgtgcccacacagattaagggtgggtctgcctttcccagcccactgactcacatgttaatctttttttggcaacaccctcacagacacacccaggatgaatactttacatccttcaatccaatcaagttgacactcattataaaccatcataa
s panTro4.chrUn_GL393527         156898 296 +    341619 ccaaaactgaagaacttggagtccatgttcgaaggcaagaagcatccagcatgggagaaagatgtaggctgggaggcgagacccgcctcttttcacacttttctgcctgcttatagtatggctgggttggcagctgataggattgtgcccacacagattaagggtgggtctgcctttcccagcccactgactcgcatgttaatctttttttggcaacaccctcacagacacacccaggatgaatactttacatccttcaatccaatcaagttgacactcattattaaccatcacaa
i panTro4.chrUn_GL393527       C 0 C 0
s rheMac3.chrUn_JH290316          27111 295 -     44534 ccaaaactgaagaacttggagtctatattcgagggcaggaagcatccagcacaggagaaagatgtaggctgggaggctaggcccgtctcttctcacatttttctgccggcttatagtctagctgtgttggcagctgattgcattatgcccacaaagattaagggtgggtctgccttccccagcccactgactcaaatgttaatc-tcctttggcaacaccctcacagacacacccagaatcatcactttacatccttcaatccaatcaaattgaaactcagtattaaccatcacCa
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61750613 295 -  96509753 ccaaaactgaagaacttggagtccatgttcaagggcaggaagcatccagcacaggagaaagatgtaggctgggaggctaggcccgtctcttttcacatttttctgcctgcttatagtctagctgtgttggcagctgattgcattgtgcccacgaagattaagggtgggtctgccttccccagcccactgactcaaatgttaatc-tcctttggcaacaccctcacagacacacccaggatcaacactttacatccttcaatccaatcaaattgaaactcagtattaaccatcacCa
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23357277 294 - 128036923 ccaaaactgaagaccTTGGAGTCCATGtttgaggacaggaagcatccagcacgggagaaagatgtaggctgggaggctaggctcgtctcttctcacatttttctgcccGCTTATAGTCTAGCTGTGTTGGCAGCTGATTGTATTGTGCTTATGCAGATTAAGGGTgaatctgcctttcccagcccactaactcaaatgttaatc-tcctttggcaaca-cctcacagacacacccaggatcaacactttacatccttcaatccaatcaaattgaaactcagtattaaccatcacca
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90912535 294 - 107702431 ccaaaactgaagaccttggagtccatgtttgagggcaggaagcatccagcacaggagaaagatgtaggctgggaagctaggctcatctcttctcacatttttctgcccgcttatagtctagctgtgttggcagctgattgtattgtgctcacgcagattaagggtgattctgcctttcccagcccactgactcaaatgttagtc-tcctttggcaaca-cctcacagacacaccgaggatcaacactttacatccttcaatccaatcaaattgaaactcagtattaaccatcacCa
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381   1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I
e ponAbe2.chrUn                 2090265 622 +  72422247 M

a score=699782.000000
s hg38.chr14_KI270725v1_random    81404 421 +    172810 gcccaccccttgtgaacttgaacccacgcacatctcctgagatcatacataatcttaaaatacagacaatagtt-aggtcataattac-cccaacataata-aactatccttcctacaact-ggaaatgcaccaatcctcaacccaaatactattacataaagtaaacaatacttaaatgctgatatgaggtgagcaaatc-tatgtcacctgataaagaaaagggaaatgaaatgaagatattttcttagtacaagtgcatacatgcacaaacatgtttttaacaaaagaagaaggaaatactcatgatagttccagtcctcatttctgcagctggtcaggtggtcgtagctggtattgataactactttcttccactattcattctgtattccctttgccttcagcaagcagctcagcaggtcg
s panTro4.chrUn_GL393527         157194 421 +    341619 gcccaccccttgtgaacttgaacccacacacatctcctgagatcatacataatcttaaaatacagacaatagta-aggtcataattac-cccaacataata-aactatacttcctataact-ggaaatgcaccaatccccaacccaaatactattacataaagtaaacaatacttaaatgctgatatgaggtcagcaaatc-tatgtcacctgataaagaaaagggaaatgaaatgaagatattttcttagtacaagtgcatacatgcacaaacatgtttttaacaaaagatgaaggaaatactcatgatagttcccgtcctcatttctgcagctggtcaggtggtcgtagctggtattgataactactttcttccactattcattctgtattccctttgccttcagcaagcacctcagcaggtcc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2090894 422 +  72422247 gcccacgcattgtgaacttgaaccc-cacacatct-gtgagatcatacataatcttaaaatacagacaatagtagaggtcataattacgcttaacataata-aactgccattcctacaactgggaaatgcaccaatccccaacccaaatactattacataaagtaaacaatacttaaatgctgatatgaggtcagtaaatc-tatgtcacctgataaagaaaagggaaatgaaatgaagatattttcttagtacaagtgcatacatgcacaaacatgtttttaacaaaagaaggaggaaatactcatgatagttccagtcctcatttctgcagctggtcaggtggtcatagctggtattgataactactttcttccactattcattctgtattccctttgccttcagcaagcacctcagcaggtcg
i ponAbe2.chrUn                M 622 C 0
s rheMac3.chrUn_JH290316          27406 419 -     44534 gcccaccccttgtcaactggaacccacacacatctcctgagatcaaacataatgttaaaatacagacaatagta-aggtcatggttacctctaacataatacaactatgcttcctacaact-ggaaatgcaccaatccccaacccaaaaactattacacaaaatgaacaatacctaaatgctcatatgaggtcaataaatcttatgtcacctgatagagaaaccg-----gaaatgaagataatttcttagtacaaatgtatacgtgcacaaatatgtttttaacaaaagaagaaggaaatactcatgatagttccagtcctcctttctgcagctggtcacgtggttgtagctgatattgatcactaccttcttccactactcattctgtattccctttgccttcagcaagcacctcaggaagtcg
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61750908 419 -  96509753 gcccaccccctgtcaactggaacccacacacatctcctgagatcaaacataatgttaaaatacagacaatagta-aggtcatggttacctctaacataatacaactatgcttcctacaact-gaaaatgtaccaatccccaacccaaaaactattacacaaaatgaacaatacctaaatgctcatatgaggtcaataaatcttatgtcacctgatagagaaaccg-----gaaatgaagataatttcttagtacaagtgtatacgtgcacaaatatgtttttaacaaaagaagaaggaaatactcatgatagttccagtcctcctttctgcagctggtcacgtggttgtagctgatattgatcactaccttcttccactactcattctgtattccctttgccttcagcaagcacctcaggaagtcg
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23357571 419 - 128036923 GCCCACCCCTTGTCAACTGGAACCCacacacatctcctgagatcaaaCATAATGTTAAAATACAGACAATAGTA-AGGTCATAGTTACCCCTAACATGATACAACTATGCTTTCTACAAct-ggaaatgcaccaatccccaacccaaaaaCTATTACACAAAATGAATAATACTTAAATGCTCATATGaggtcaataaatcttatgtcacctAATAGAGAAACCG-----GAAATGAAGATaatttcttagtacaagtgtatacatgcacaaatacGTTTTCaacaaaagaagaaggaaatactCATGATAGTTCCAGTCCtcctttctgcagctggtcacgtggtCATAGCTGATATTGATCACTACCTTCTTCCACTATTCATTCTGTATTgcttttgccttcagcaagcacctcagcaggtcg
i papAnu2.chr13                C 0 I 54836
s chlSab2.chr14                90912829 419 - 107702431 gcccaccccttgtcaactggaacccacacacatctcctgagatcaaacataatgttaaaatacagacaatagta-aggtcatagttacccctaacataatacaactatgcttcctacaact-ggaaatgcaccaatccccaacccaaaaactattacacaaaatgaataatacctaaatgctcatatgaggtcaataaatcttatgtcacctgatagagaaactg-----gaaatgaagataatttcttagtacaagtgtatacatgcacaaatatgtttttaacaaaagaagaaggaaatactcatgatagttccagtcctcctttctgcagctggtcacatggtcatagctgatattgatcactaccttcttccactattcattctgtattgcctttgccttcagcaagcacctcagcaggtcg
i chlSab2.chr14                C 0 I 60182
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381   1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=101131.000000
s hg38.chr14_KI270725v1_random    81825 61 +    172810 tgacccggagaggatctggaccatttgtagtcctacctggattgggtatagtttcccattt
s panTro4.chrUn_GL393527         157615 61 +    341619 agacccggagaggatctggaccatttgtagtcctacctggattgggtgtagtttcccattt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2091316 61 +  72422247 tgacccggagaggatctggaccatttgtagtcctatctggattgggtatagtttcccattg
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          27825 61 -     44534 tgacccagaaaggatctcgaccatttgtagtcctacctggattgggtatagtttcccaccg
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61751327 61 -  96509753 tgacccagaaaggatctcgaccatttttagtcctacctggattgggtatagtttcccattg
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23412826 61 - 128036923 TGACCCAGAAAGGATCTGGACTATTTGTAGTCCTACCTGGACGGGGTATaatttcccattg
i papAnu2.chr13                I 54836 T 54897
s chlSab2.chr14                90973430 61 - 107702431 tggcctggacaggatcttgactatttgtagtcctacttggattgggtatagtttcccattg
i chlSab2.chr14                I 60182 T 60243
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381  1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=3573006.000000
s hg38.chr14_KI270725v1_random    81886 2041 +    172810 aacttaatcagagtgcatgataataccaagagatgccctaatggatctcctatattccatgcatactcttcctcacttccgttgtggagtagtggactgacttcatcttgatagtctgggtcaatcactgccgccaacactgtaactccattcttagcttgttgacttaaaggtaggaggaccccaaagcgtccaagtggccatcttaacttccagtttaatggaatccttattgtgtctcctggtagcaacgttcttccctctggagctaagatgactagtaaagcagaacctaatgtcgtgggaacagaaagcaaacattttgctagtgcatc----------atagtgagtggttccactttcacatccaccccttgaatcctggatctgtgaatactggctatgggagaaacaataccatacgttgggcgctgattcagagcacacatggtcttctggagtatggtgccccggcccggccaagtattgtaacctagttgacgttgtaatcgcgacctcaaaaggccgtcccaccattctatcaatccagatgcttcaggaagatggtgaatatggtaagaccagtgaattccgtgaacgtgagcccattgcctcacttcttcacctgtaaagtgagtgcttggtcagaggtaatgctgtgtggaataccgtgatagtggataaggcattccttgagtccataaatagtagtcttggcagaagcattgcatgcaggtaggtaaactcatatccggagtaagtgcctgttccaatgaggacaaacctctctcctttccatggtggaagaggtccaatataatcaacctgtcaccgggtagctggtcgatcaccccagggaatgatgccatacaaagagttcactgttagtctctgctgctgctggcaaattgggcactcagcagtggccacagacagttcagccttggtgagtggaagtccacattgctgaatccatgcatagcctccatccctgacaccatggccactatgttcatggtctcattggacaatgacaggggtgtctgaggaaagaggctgagtggtatccacagaacgggtcatcttatccacttgattatcaaaatcctcctctcctgaagtcacttgttggtcaacactcacacagggtacaaatatctt--cagtttttgaccactcagagaggtccatctacatactctttctccaagtttctttgtcaccaattttccaatcatgcttcttccaagtccctgaccatccagccaaaccattggctacagcccatgaatcagtatataaccgcacatctggaaatttctccttccatgcaaagtgcacaatcaggtgcactgctcaatgttctgcccactgggaagattttccttcaccactctccttcagggatgtcctagaaaggggctgtagtgcttcagctgtccacttttgggcggtacctgcctattgtggagaaccatctgtgaaccagaccctagtcctcccttcctgtgttaactgctcaaaggcaagtccccatgaggtcatcagtgcaggccatgggagagaaagcagggtggcagg----------gtgggcatttgagccacttcctcatgtaacttacttgtgccccccaggacctgcttgagcccaatcacttatacaccatttccatttgatgatgcaatgctgctgtgcatgacccactttatggctacatgagtcagaaagcacccagttcacgataggcagttcaggtcgcgtggtgacttgttgactcatagtcaaatgttcagtttccacaaaagcccagtataagacaagagctgtctctcaaaaggagagtagttaactggagaagatgaccacgccttgctgcaaaatactagaggactgcaccatgattcacctatagaggcctgccaaagcctcaaagcagcattcctatctgccatggacacctcagggggacccagcctccccttcattcaaggggttctgggtctgtaaactggctcaaggctggaaattgattgaggggccatgaatctctgttttt
s panTro4.chrUn_GL393527         157676 2051 +    341619 acgttaatcagagtgcatgataataccaagagatgccctaatggatctcctatattccatgcatactcttcctcacttccgttgtggagtagcggactgacatcatcttgatagtctgggtcaatcactgccgccagcactgtaactccattcttagcttgttgacttaaaggtaggaggaccccaaagcgtccaagtggccatcttaacttccagcttaatggaatcgttattgtgtctcctggtagcagcattcttccctctggagctaagatgactagtaaagcagaacctaatgtcgtgggaacagaaagcaaacattttgctagtgcatc----------atagtgagtggttccactttcacatccaccccttgaatcctggatctgtgaatcctggctatgggagaaacaataccatacattgggcgctgattcagagcacacatggtcttctggagtatggtgccctggcccggcaaagtactgtaaccttgttgacgttgtaatcgcgacctcaaaaggccgtcccaccattctatcaatccagctgcttcaggaagatggggaatatggtaagaccagtgaattccgtgagcatgagcccactgcctcacttctttacctgtaaagtgagtgcttggtcagaggtaatgctgtgtggaataccgtgatagtggataaggcattccttgagtccataaatggtagtcttggcagaagcattgcatgcaggtaggcaaacccatatccggagtaagtgcctgttccaatgaggacaaacctctctcctttccatggtggaagaggtccaatataatcaacctgccaccggctagctggtcgatcaccccagtgaatgatgccatacaaagggttcactgttagtctctgctgctgctggcaaattgggcactcagcagtggccacagacagttcatccttggtgagtggatgtccacaatgctgaatccatgcatagcctccatccctgccaccatggccactatgttcatgggctcattggacaatgacaggggtgtctgaggaaagaggctgagtggtatccacagaacgggtcatcttatccacttgattatcaaagtcctcctctgctgaagtcacttgttggtcaacactcacacagggtacaaatatctt--cagtttttgaccactcagagaggtccatctacatactctttctccaagtttctttgtcaccaattttccaatcatgcttcttccaagtccctgaccatccagccaaaccattggctacagcccatgaatcagtatataaccgcacatctggcaatttctccttccatgcaaagtgcacaatcaggtgcactgctcaatgttctgcccactgggaagattgtccttcaccactgtccttcagggatgtcctagaaaggggctgtagtgcttcagccgtccacttttgggcggtacctgcctattgtggagaaccatctgtgaaccaggccctagtcctcccttcctgtgtcaactgctcaaaggcaagtccccatgaggtcatcagtgctggccgtgggagagaaggcagggtggcaggagtagagaccgtgcgtatttgagccacttcctcatgtaacttacttgtgccccccaggacctgcttgagcccaatcacttatacaccatttccatttgatgatggaatgctgctgtacatgacccactttatggctacatgagtcagaaagcacccagttcacgataggcagttcaggtcgcatggtgacttgttgactcatagtcaaatgttcagtttccacaaaagcccagtataggacaagagctgtctctcaaaaggagagtagttaactggagaagatgaccgggccttgctgcaaaatactagaggcctccaccatgattcacctatggaggcctgccaaagcctcaaagcagcattcctatctgccatggacacctcagggggacccagcctccccttcattcaaggggttctgggtctgtaaactggctcaaggctggaaattgattgaggggccatgaatctctgttttt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2091377 2048 +  72422247 accttaatcagagtgcatgataataccaagagacgccctaatggatctcctatattccatgcatactcttcctcacttccgttatggagtagcggactgacttcatcctgatagtctgggtcaatcactgctgccaacactgtaactccattcttagcttgttgacttaaaggtaggaggaccccaaagcgtccaagtggccatcttaacttccagtttaatggaatcgttattgtgtctcctggtagcagcgttcttccctctggagctaagatgactagtaaagcagaacctaatgtcatgggaacagaaagcaaacattttgctagtgcatc----------atagtgagtggttccactttcacatccatcccttgaatcctggatctgtgaatcctggctatgggagaaacaataccatacattgggcgctgattcagagcacacatggtcttctggagtatggtgccccggcccggcaaagtactgtaacctagttgacattgtaattgcgacctcaaaaggccgtcccacaattctatcaatccagctgcttcaggaagttggggaatatggtaagaccagtgaattccatgagcatgagcccactgcctcacttctttacctgtaaagtgagtgcttggtcagaggtaatgctgtgtggaataccgtgatagtggataaggcattccgtgagtctgtgaatggtagtcttggcagaagcattgtgtgcaggtaggcaaacccatatccggagtaagtgcctgttccaacgaggacaaacctctctcctttccatggtggaagaggtctaatataatcaacctgccaccgggtagctggtcgatcaccccagggaatgatgccatacaaagggttcactgttagtctctgctgctgctggcaaattgggcactcagcagtggccacagacagttcagccttggtgagtggaagtccacattgctgaatccatgcatagcctccatccctgccaccatggccactatgttcatgggctcattggacaatgacaggggtgtctggggaaagaggctgagtggtatccacagaacgggtcatcttatccacttgattatcaaaatcctcctctgctgaagtcacttgttggtcaacactcacacagggtacaaatatctt--cagtttttgacgactcagagaggtccatctacatactctttccccaagtttctttgtcaccaattttccaatcatgcttcttccaagtccctgaccatccagccaaaccattggctacagcccatgaatcagtatataaccgcacatctggaaatttctccttccatgcaaagtgcacagtcaggtgtactgctcaatgttctgcccactgggaagactgtccttcaccactgtccttcagggatgtcctagaaaggggctgtagtgcttcagctgtccactttcgggcggtacctgcctattgtggagaaccatctgtaaaccaggccctagtcctctcttcctctgtcaactgctcaaaggcaagtccccatgaggtcatcggtgcaggccgtgggagagaaggcagggtggcaggagtagagacagtgggcatttgagccacttcctcatgtaacttacttgtg-cccccaggacctgcttgagcccaatcacttatacaccatttccatttgatgatggaatgctgctgtgcacgacccactttatggctacatgagtcagaaagcacccagttcacgataggcagttcaggtcgcatggtgacttgttgaccc--agtcaaatgttcagtttccacaaaagcccagtacaggacaagagctgtctctcaaaaggagagcagttaactggagaagatgaccgggccttgctgcaaaatactagaggcctccaccatgattcacctatggaggcctgccaaagcctcaaagcagcattcctatctgccacggacacctcaagcggacctggcctccccttcattcaaggggttctgggtctgtaaactggctcaaggctggaaattgattgaggggccatgaatctctgttttt
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          27886 2050 -     44534 accttaatcagagtgcatgataataccaagagacgccctaatggatctcctatactccatacatactcttcatcacttctattgtggagtagtggactgagttcatcttgatagtctgggtcaatcaccgcagccaacactgtaacaccattcttagcctgttgacttaaagataggaggagcccaaagtgtccaggtggtcagcttaacttctggtttaatggaatcattattgtgtctcctggtggcagcgttcttccctctagaactaagatgtctagcccagcagaacataatgtcgctggaacagaaagcaaacattttgctagtggatcactagaggtaatagtgaatggtttcactttcacttccaccccttgaatcctggatctgtgaatcctggctatgggagaaacagtaccatacagtgggtgctgattcagagcatacatggccttctggagtactttgctccagccctgcaaagtattgtaacctagttga---tgtaaatgtgacctcaaaaggccgttccaccattctgtcaaacaagctgcttcaggatgatggggaacacggtaagaccagtgaattctatgagcataagccgattgccccacttctttacctgtaaagtgagtgcttggtcagcggtaatgctgtgtggaatactgtgattgtggataaggcattgcttgagtctataaatggtagtcttggcagaagtattgtgtgcaagtaggcaaacccatattcggagtaagtgcctgttccagtgaggacaaacctctctgctttccatgatggaagaggtccaatataatcaacctgccacctggtagctggtcgatcaccccacagaacggtgccatacaaagggttcattgttggtctctgctgctgctggcaaattgggcactcagcagtggtcacagacagtacagtcttggtgagtggaagtccacgttgcagaatccatgcataacctccatccttcccactatggctacaatgttcatgggttcattggacgatgacaggggtgtctggagaaagaggataagtggcattcacagaatgggtcatcttatccacttgattatcaaaatcctcctctactgaagtcacttgttggtga--------atgggatacaaatatcttcacagtttttgaccactcagagaggtccatctacatactgcttctccaaatttctttgtcaccaattttccaaccatgcttcttccaattctatgaccatccagccaaaccattggctacagtccatgaatcagtatataatcacacatctggaaaattctccttctacgcaaagtgcacaaccaggtgcactgctcaatgttctggccactgggaagattttccttcaccactgtccttcagggatatcctagaaaggggctgtagtgcttcagctgcccactttcaggtggtacctgcctattgtgcagaatcatctgtgaaccaggccctagtcttcccttcctctgtcagctgctcaaagggaagtccccgtgaggtcatcggtgcaggctgtgggaaagaagacagggtggcaggagtagagatcatgggcatttgggccacttcctcatgtaacttacttgtg-cccccaggacctgtttgagcccaatcacttatataccatttccatgtgatgatggaatgctgccgtgcatgacccactttatggctacatgaatcagaaagcacccagttcatgataggcagttcaggttgcatggtgacttgttgacccatagtcaaacgtacagtttccaccaaagcccagtataggacaagagctgtctctcaaaaggagagtagttaactccagaagatgaccgggccttgctgcaaaatccgagc-gtctccaccatgattcacctatgggggcctgccaaagcctcaaagcagcattcctatctgccatggacacttcaaggggacccagcctccccttcattcattgggttcttggtctttaaactgcctcaagtctggaaattgattgaggggccatgaatctctgttttt
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61751388 2047 -  96509753 accttaatcagagtgcatgataataccaagagacgccctaatggatctcctatattccatacatactcttcgtcacttctattgtggagtagtggactgagttcatcttgatagtctgggtcaatcaccgcagccaacactgtaacaccattcttagcctgttgacttaaaggtaggaggagcccaaagtgtccaggtggccaacttaacttccggtttaatggaatcattattgtgtctcctggtggcagcgttcttccctctagaactaagatgtctagcccagcagaacataatgtcgccggaacagaaagcaaacattttgctagtggatcactagaggtaatagtgaatggtttcactttcacttccaccccttgaatcctggatctgtgaatcctggctatgggagaaacagtaccatacagtgggtgctgattcagggcatacatggccttctggagtactttgctccagccctgcaaagtattgtaacctagttga---tgtaaatgtgacctcaaaaggccgttccaccattctgtcaaacaagctgcttcaggatgatggggaacatggtaagaccagtgaattctatgagcataagccgattgccccacttctttacgtgtaaagtgagtgcttggtcagcggtaatgctgtgtggaatactgtgattgtggataaggcattgcttgagtctataaatggtagtcttggcagaagtattgtgtgcaggtaggcaaacccatattcggagtaagtgcctattccagtgaggacaaacctctctgctttccatgatggaagaggtccaatataatcaacctgccacctggtagctggtcgatcaccccacagaacggtgccatacaaagggttcattgttggtctctgctgctgctggcaaattgggcactcagcagtgatcacagacagtatagtcttggtgagtggaagttcacgttgcagaatccatgcataacctccatccttcccactatagctacaatgttcatgggttcattggacgatgacaggggtgtctggggaaagaggataagtggtattcacagaatgggtcatcttatccacttgattatcagaatcctcctctactgaagtcacttgttggtga--------atgggatacaaatatcttcacagtttttgaccactcagagaggtccatctacatactccttctccaaatttctttgtcaccaattttccaaccatgcttcttccaattctatgagcatccagccaaaccattggctacagtccatgaatcagtatataatcacacatctggaaatttctccttctacgcaaagtgcacaaccaggtgcactgctcaatgttctggccactgggaagattttccttcaccactgtccttcagggatgtcctagaaaggggctgtagtgcttcagctgcccactttcaggtggtacctgcctattgtgcagaatcatctgtgaaccaggccctagtcttcccttcctctgtcagctgctcaaagggaagtccccgtgaggtcatcggtgcaggctgtgggaaagaagacagggtggcaggagtagagatcatgggcatttgggccacttcctcaagtaacttacttgtg-cccccaggacctgcttgagcccaatcacttatataccatttccatgtgatgatggaatgctgccgcgcatgacacactttaaggctacatgaatcagaaagcacccagttcacgataggcagttcaggttgcatggtgacttgttgacccatagtcaaacgta-agtttccaccaaagcccagtataggacaagagctgtctctcaaaaggagagtagttaactccagaagatgaccgggccttgctgcaaaatccaagc-gtctccaccatgattcacctatgggggcctaccaaagcctcaaagcagcattcctatctgccatggacacttcaaggggacccagcctccccttcattcatggggttcttggtctttaaactgcctcaagtctggaaattgattgaggggccatgaa--tctgttttt
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23357990 2047 - 128036923 aCCTTAATCAGAGTGCATGATAATACCAAGAgacaccctaatggatctcctatATTCCATACATACTGTTCGTCACTTCTATTGTGGAGTAGGGGACTGagttcatcttgatagtctgggtcaatcactgcagccaacactgtaactccattcttagcctgttgacttaaaggtaggaggagcccaaagtgtccaggtggccaACTTAACTTCCGGTGTAATGGAATCATTATtatgtctcctggtggcagcgttCTTCCCTCTAGAACTAAGATGTCTAGcccagcagaacataatgtcaccggaacagaaagcaaacattttgctagtggatcactaggggtgatagTGAATGGTTTCACTTTCACTTCCACCCCTTGAATCCTGGAtctgtgaatcctggctatgggagaaacagtaccatacaTTGggtgctgattcagagcatacatggcTTTCTGGAGTACTTTGCTCcggccctgcaaagtattgtaaCCTAGTTGA---TGTAAATGTGACCTCAAAAGGCCGTTCCACCGTTCTGTCAAACAAGCTGCTTCAAgttgatggggaacatggtaagaccagtgaattctaTGAGCATAAGCCCATTGTCCCTCTTCTTTACCTGTAAAGTGAGTGCTTGGTCAGTGgtaatgctgtgtggaatactaTGATTGTGGATAAGGCATTGCTTGAGTCCATaaatggtagtcttggcagaagtaTTGTGTGCAGGTAGGCAAACCCATATTCGGAGTAAGTGCCTATTCCATTGAGGACAAACCTCTCtgctttccatgatggaagaggtccaatataatcaacctgccatcTGGTAGCTGGTCGATCACCCTATGGAACGTTGCCATACAAAGGGTTCattgttggtctctgctgctgctggcaaattgggcactcagcagtgacCACAGACAGTACAgtcttggtgagtggaagtccacgTTGCAGAAtccatgcataacctccatccctcCCACTATGGCCACAATGTTCATGGGTTCATTGGATGATGACAGGGGTGTCTGGGGAAAGAGGATAAGTGGTatccacagaatgggtcatcTTATCCACTTGATTACCAAAATCTTCCTCTACTGAAGTCACTTGTTGGTga--------atgggatacaaatatcttcacagtttttgaccactcagagaggtccatctaCATACTCCTtctccaaatttctttgtcaccaattttccaatcatgtttCTTCCAATTCtatgaccatccagccaaaccattgccTACAgtccatgaatcagtatataatcacacatctggaaATTTCTCCTTCTATGCAAAgcgcacaaccaggtgcactgctcaatGTTCTGGCCACTGGGAAGATTttccttcaccactgtccttcagggatgtcctagaaaagGGCTGTAGTGCTtcagctgtccactttcaggtggtACCTGCCTATTGTGCAGaatcatctgtgaaccaggccctagtcttcccTTCCTCTGTCAGCTGCTCAAAGGGAAGTCTCCATGAGGTCATCGGTGCAGGTTGTGGGAAAGAAGACAGGGTGGCAGGAGTAGAGATCATGGGCATTTGGGCCACTTCCTTATGTAACTTAGTTGTG-CCCCCAGGACCTGCTTGAGCCCAATCACTTATATACCATTTCCATGTGATGATGGAATGCCGCcgtgcatgacccactttatggctacaTGAGCCAGAAAGCACCCACTTCAcgataggcagttcaggttgcatggtgacttgttgacccatagtcaaacgttcagtttcATCCAAAGCCCAGTATAGgacaagagctgtctctcaaaaggagagtagttaacTCCAGAAGATGACCGGGCCTTGCTGCAAAATCCGAGC-GTCTCCACcatgattcacctatgggggcctgcc-aatCCTCAAAGCAGCATTCCTATCTGCCATGGACACCTCAAGGGGacctggcctccccttcattcatgGGGTTCTTGGTCTTTAAACTgcctcaagtctggaaattgattgaggggccatgaA--TCTGTTTTT
i papAnu2.chr13                T 54897 C 0
s chlSab2.chr14                90913248 2049 - 107702431 accttaatcagagtgcatgacaataccaagagacaccctaatggatctcctatattccatacatacttttcgtcacttctattgtggagtagtggactgagttcatcttgatagtctgggtcaatcaccgcagccaacactgtaactccattcttagcctgttgacttaaaggtaggaggagcccaaagtgtccaggtggccaacttaacttccggtgtaatggaatcattattatgtctcctggtggcagtgttcttccctctagaactaagatgtctagcccagcagaacataatgtcgcggaaacagaaagcaaacattttgctagtggatcactaggggtgagagtgaatggtttcacttt-acttccaccccttgaatcctggatctgtgaatcctggctatgggagaaacagtaccatacattgggtgctgattcagagcatacatggccttctggagtactttgctccggccctgcaaagtattgtaacctagttga---tgtaaatgtgacctcaaaaggccgttccaccgttctgtcaaacaagctgcttcaagttgatggggaacatggtaagaccagtgaattctatgagcataagcccattgtcccacttctttacctgtaaagtgagtgcttggtcagtggtaatgctgtgtggaatactatgattgtggataaggcattgcttgagtccataaatggtagtcttggcagaagtattgtgtgcaggtaggcaaatccatattcggagtaagtgcctattccagtgaggacaaacctctctgctttccatgatggaagaggtccaatataatcaacctgacacctggtagctggtcgatcaccccacagaatggtgccatacaatgggttcattgttggtctctgttcctgctggcaaattgggcactcagcagtgaccacagacagtacagtcttggtgagtggaagtccacgttgcagaatccatgcataacctccatccctcccactatggccacaatgttcatgggttcattggatgatgacaggggtgtctggggaaagaggataagtggtatccacagaatggatcatcttatccacttgattatcaaaatcctcctctactgaagtcacttgttggtga--------atgggatacaaatatcttcacagtttttgaccactcagagaggtccatctatatactccttctccaaatttctttgtcagcaattttccaatcatgcctcttccaattctatgaccatccagccaaaccactggctacagtccatgaatcagtatataatcacacatctggaaatttctccttctatgcaaagcacacaaccaggtgcactgctcaatgttctggccactgggaagattttccttcaccactgtccttcagggatgtcctagaaaagggctgtagtgcttcagctgtccactttcaggtggtacctgcctattgtgcagaatcatctgtgaaccaggccctagtcttcccttcctctgtcagctgctcaaagggaagtccccatgaggtcatcggtgcaggttgtgggaaagaagacagggtggcaggagtagagatcatgggcatttgggccacttcctcatgtaacttacttgtg-cccccaggacctgcttgagcccaatcacttatataccgtttccatgtgatgatggaatgctgccgcgcatgacccactttatggctacatgaatcagaaagcacccagttcacgataggcagttcaggttgcatggtgacttgttgacccatagtcaaacatacagtttccaccgaagcccagtataggacaagagctgtctctcaaaaggagagtagttaactccagaagatgaccgggccttgctgcaaaatccaagt-gtctccaccatgattcacctgtgggggcctgccacagcctcaaagcagcattcctatctgccatggacacctcaaggggacccggcctccccttcattcatggggttcttggtctttaaactgcctcaagtctggaaattgattgaggggccatgaatctctgttttt
i chlSab2.chr14                T 60243 C 0
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381    1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186    0 +    112108 I

a score=3198.000000
s hg38.chr14_KI270725v1_random    83927 2 +    172810 at
s panTro4.chrUn_GL393527         159727 2 +    341619 at
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2093425 2 +  72422247 at
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          29936 2 -     44534 ac
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61753435 2 -  96509753 ac
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23360037 2 - 128036923 AC
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90915297 2 - 107702431 ac
i chlSab2.chr14                C 0 C 0
s nasLar1.chr13                22686395 2 - 126811233 at
i nasLar1.chr13                N 0 I 358
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381 1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=605794.000000
s hg38.chr14_KI270725v1_random    83929 357 +    172810 aattccaattagtcttttatctgtttgaccttaagtttcctccttacataaattaagtaggaatgcattagttttcctgtcagtttcacttctaggaacactgtgattagttagccaatgccagagctctacatgagtcagactgttcagattgctgctttgtcttttctgcccattacggtagctacacccaccatgcctttgagggttgagtgctaccacttggcccctgccacttcaggatccaattattccaaattgtatttaacttttgtaactgagtgactgcagttctcaccattagaactgacatacagagaagagcctttacagggctcttcaaagatgcaggcgctc
s panTro4.chrUn_GL393527         159729 357 +    341619 aattccaattagtcttttatctgtttgaccttaagtttcctccttacataaattaagtaggaatgcattagtcttcctgtcagtttcacttctaggaacactgtgattagttagccaatgccagagctctacatgagtcagactgttcagattgctgctttgtcttttctgcccattacggtagctacgcccaccgtgcctttgagggttgagtgctaccacttggcccctgccacttcaggatccaattattccaaattgtatttaacttttgtaactgagtgactgcagttctcaccattagatctgacatacagagaagagcctttacagggctcttcaaagatgcaggtgctg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2093427 357 +  72422247 aactccaattagtcttttatctgtttgaccttaagtttcctccttacataaattaagtaggaatgcattaggcttcctgtcagtttcacttctaggaacactgtgattagttagccaatgccagagccctacatgagtcagactgttcagattgctgctttgtcttttctgcccattacagtagctacgcccactgtgcctttgagggttgagtgctaccacttggcccctgccacttcaggatgcaattattccaaattgtatttaaattttgtaactgagtgactgcagttctcaccattagatctgacatacagagaaaagccattatagggctcttcaaagatgcaggtgctt
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          29938 343 -     44534 aattccaattagtcttttatctgtttgacctgaagtttcctccttacataaattaagtaggaatgcatttggcttcctctcagttt--------------ctgtggttaattagccaatgccagaactctacatgagttatactgttcagattgctgctttgtcttttctgaccattacagtagctatgcccaccgtacctttgagtgttgtgtgtgaccacttggcccctgccacttcaggatacgattattccaaattgtatttaaattttgtaattgagtgagtacagttcttatcgctagatctgacatacagagaagagccattacagggctcttcaaagatgcaggtgctg
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61753437 343 -  96509753 aattccaattagtcttttatctgtttgacctgaagtttcctccttacataaattaagtaggaatgcatttggcttcctctcagttt--------------ctgtggttaattagccaatgccagaactctacatgagttatactgttcagattgctgctttgtcttttctcaccattacagtagctatgcccaccgtacctttgagtgttgtgtgtgaccacttggcccctgccacttcaggatacgattattccaaattgtatttaaattttgtaattgagtgagtacagttcttaccgctagatctgacatacagagaagagccattacagggctcttcaaagatgcaggtgctg
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23360039 343 - 128036923 AATTCCAATTAGTCTTTTATCTGTTTGACCTGAAGTTTCCTCCTTacataaattaagtaggaatgcattTGGCTTCCTCTCAGTTT--------------CTGTggttaattagccaatgccagaaaTCTACATGAGTTATGCTGTTCAGATTGCTGCTTTGTCTTTTCTGACCATTACAGTAGCTATGCCCACCGTACCTTTGAGTGTTGTGTGTGACCACTTGGCCCCTGCCGCTTCAGGATACGATTATTccaaattgtatttaaattttgtaattgagTGAGTACAGTTCTCACTgctagatctgacatacagagaagagccattacagggctcttcaaagatgcaggtgctg
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90915299 357 - 107702431 aattccaattagtcttttatctgtttgacctgaagtttcctccttacataaattaagtaggaatgcattaggcttcctatcagtttcacttctaagaacactgtggttaattagccaatgccagaactctatatgagttacactgttcagattgctgccttgtcttttctgtccattacagtagctacgcccaccgtgcctttgagggttgtgtgtgaccacttggcccctgctgcttcaggatacaattattccaaattgtatttaaattttgtaattgagtgtgtacagttctcaccgctagatctgacatacagagaagagccattacagggctcttcaaagatgcaggtgctg
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 48919583 3713 + 121947112 I
e nasLar1.chr13                22686397 358 - 126811233 I
e calJac3.chr14                90630381   1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=1219.000000
s hg38.chr14_KI270725v1_random    84286 1 +    172810 t
s panTro4.chrUn_GL393527         160086 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2093784 1 +  72422247 c
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          30281 1 -     44534 c
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61753780 1 -  96509753 c
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23360382 1 - 128036923 c
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90915656 1 - 107702431 c
i chlSab2.chr14                C 0 C 0
s nasLar1.chr13                22686755 1 - 126811233 c
i nasLar1.chr13                I 358 I 14
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381 1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=24378.000000
s hg38.chr14_KI270725v1_random    84287 13 +    172810 cctcacaaatcta
s panTro4.chrUn_GL393527         160087 13 +    341619 cctcacaaatcta
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2093785 13 +  72422247 cctcacaaatcta
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          30282 13 -     44534 cctcacaaatcca
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61753781 13 -  96509753 cctcacaaatcca
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23360383 13 - 128036923 cctcacaaatcca
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90915657 13 - 107702431 cctcacaaatcca
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 48919583 3713 + 121947112 I
e nasLar1.chr13                22686756 14 - 126811233 I
e calJac3.chr14                90630381  1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=1449.000000
s hg38.chr14_KI270725v1_random    84300 2 +    172810 tt
s panTro4.chrUn_GL393527         160100 2 +    341619 tt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2093798 2 +  72422247 tt
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          30295 2 -     44534 tt
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61753794 2 -  96509753 tt
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23360396 2 - 128036923 TT
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90915670 2 - 107702431 tt
i chlSab2.chr14                C 0 C 0
s nasLar1.chr13                22686770 1 - 126811233 t-
i nasLar1.chr13                I 14 N 0
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381 1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=567971.000000
s hg38.chr14_KI270725v1_random    84302 319 +    172810 ttgcaaggtgtttgtcaagggtattaggtacagagtcactaaactccttgcctctcacgagcgatgattcattagtgtcgaatgaatttgttttgcatagctctttaaacctttcatgccaagaactgtcaatgttctctacactattaaaagtagagtccttagcattttgggatctaatcatatttagcagccaaatccagaaaccccaaaaccaacaaaagaactccaaccttaatattctgttcctgcagaaccattcctggtaccaaaatctgtattagtgagggttctctagagggacagaactaataagttc
s panTro4.chrUn_GL393527         160102 318 +    341619 ttgcaaggtgtttgtcaagggtattaggtacagagtcactaaactccttgcctctcatgagcgatggttcattagtgtcaaatgaatttgtttttcatagctctttaaacctttcatgccaagtacggtcaatgttctctacactattaaaagtagagtccttagcattttgggatctaatcatatttagcagccaaatccagaaaccccaaaaccaacaaaagaactccaaccttaatattctgttcctgcagaaccat-cctggtaccaaaatctgtattagtgagggttctctagagggacagaactaataagttc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2093800 317 +  72422247 ttgcaaggtgtttgtcaagggtattaggtacagagtcactaaactccttgcctctc--gagcgatgattcattagtgtcaaatgaattggttttgcatagctctttaaacctttcatgccaagaactgtcaatgttctccacactattaaaagtagagtccttagcattttggggtctaatcatatttagcagccaaatccaggaaccccaaaaccaacaaaagaactccaaccttaatattctgttcatgtagaaccattcctggtaccaaaatctgtattagtgagcgttctctagagggacagaactaataagttc
i ponAbe2.chrUn                C 0 I 52
s rheMac3.chrUn_JH290316          30297 318 -     44534 ttgcagggtgtttgtcaagggtattaggtacagagtcactaaactccttgcctctcatgagagatgattcattactgtcaaatgcatttattttgcatagctctttaaactgttcatgccaaggactatcaatgttctccatactattaaaagtagagtccttagcattttggggtctaatcacacttagcagccaaatccaaaaaccccaaaaccaacaaaa-aactccattcttaatattctgttcctgtagaaccattcctggtaccaaaatctgtattagtgagggttctctagagggacagaactaataagttc
i rheMac3.chrUn_JH290316       C 0 I 141
s macFas5.chr10                61753796 318 -  96509753 ttgcagggtgtttgtcaagggtattaggtacagagtcactaaactccttgcctctcatgagagatgattcattactgtcaaatgcatttattttgcatagctctttaaactgttcatgccaaggactatcaatgttctccatactattaaaagtagagtccttagcattttggggtctaatcacacttagcagccaaatccaaaaaccccaaaaccaacaaaa-aactccattcttaatattctgttcctgtagaaccattcctggtaccaaaatctgtattagtgagggttctctagagggacagaactaataagttc
i macFas5.chr10                C 0 I 56
s papAnu2.chr13                23360398 317 - 128036923 TTACAGGGTGTTT-TTAAGGGTATTAGGTacagagtcactaaactccttgcctctcacgaGAGATGATTCAttagtgtcaaatgcatttattttgcatagcTCTTTAAACtgttcatgccaaggactatcaatgttctccatactattaaaAGTAGAGTCCTTcgcattttggggtctaatcataCTTAGCAGccaaatccaaaaaccccaaaaccaacaaaa-aactcCATTCTTAATACTCTGTTCCTGTAGAACcattcctggtaccaaaatctgtattagtgaGGGTTCTCtacagggacagaactaataagtTC
i papAnu2.chr13                C 0 I 58
s chlSab2.chr14                90915672 318 - 107702431 ttgcaaggtgtttgtcaagggtattaggtacagagtcactaaactccttgcctctcatgagagatgattcattagtgtcaaatgcatttattttgcatagctctttaaactgttcatgccaaggactatcaatgttctccatactattaaaagtagagtccttagcattttggggtctaatcatatttagcagccaaatcccaaaaccccaaaaccaacaaaa-aactccattcttaatattctgttcctgtagaaccattcctggtaccaaaatctgtattagtgagggttctctagagggacagaactaataagttc
i chlSab2.chr14                C 0 I 44
e gorGor3.chr9                 48919583 3713 + 121947112 I
e calJac3.chr14                90630381   1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=14931.000000
s hg38.chr14_KI270725v1_random    84621 14 +    172810 tatatatatatata
s panTro4.chrUn_GL393527         160420 14 +    341619 aatatatatatata
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2094169 14 +  72422247 TATATATATATATA
i ponAbe2.chrUn                I 52 I 41
s macFas5.chr10                61754170 14 -  96509753 tacacatatatgta
i macFas5.chr10                I 56 C 0
s papAnu2.chr13                23360773 14 - 128036923 tacacatatatgta
i papAnu2.chr13                I 58 C 0
s chlSab2.chr14                90916034 14 - 107702431 tatacatatatgta
i chlSab2.chr14                I 44 C 0
e gorGor3.chr9                 48919583 3713 + 121947112 I
e rheMac3.chrUn_JH290316          30615 141 -     44534 I
e calJac3.chr14                90630381  1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=4141.000000
s hg38.chr14_KI270725v1_random    84635 9 +    172810 tgggtttat
s panTro4.chrUn_GL393527         160434 9 +    341619 tatatatat
i panTro4.chrUn_GL393527       C 0 C 0
s macFas5.chr10                61754184 9 -  96509753 tgtgtgcat
i macFas5.chr10                C 0 I 1
s papAnu2.chr13                23360787 9 - 128036923 tgtgtgcat
i papAnu2.chr13                C 0 I 1
s chlSab2.chr14                90916048 9 - 107702431 cgtgtgcat
i chlSab2.chr14                C 0 I 1
e gorGor3.chr9                 48919583 3713 + 121947112 I
e rheMac3.chrUn_JH290316          30615 141 -     44534 I
e calJac3.chr14                90630381 1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I
e ponAbe2.chrUn                 2094183 41 +  72422247 I

a score=302.000000
s hg38.chr14_KI270725v1_random    84644 7 +    172810 --tacatat
s panTro4.chrUn_GL393527         160443 5 +    341619 --gggtt--
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 48923296 5 + 121947112 --tatat--
i gorGor3.chr9                 I 3713 I 2640
s macFas5.chr10                61754194 7 -  96509753 tatatat--
i macFas5.chr10                I 1 C 0
s papAnu2.chr13                23360797 7 - 128036923 tatatat--
i papAnu2.chr13                I 1 C 0
s chlSab2.chr14                90916058 7 - 107702431 tatatat--
i chlSab2.chr14                I 1 C 0
e rheMac3.chrUn_JH290316          30615 141 -     44534 I
e calJac3.chr14                90630381 1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I
e ponAbe2.chrUn                 2094183 41 +  72422247 I

a score=-1076.000000
s hg38.chr14_KI270725v1_random    84651 4 +    172810 -tatt
s panTro4.chrUn_GL393527         160448 4 +    341619 -tatt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2094224 4 +  72422247 -tact
i ponAbe2.chrUn                I 41 C 0
s macFas5.chr10                61754201 4 -  96509753 acat-
i macFas5.chr10                C 0 I 49
s papAnu2.chr13                23360804 4 - 128036923 acat-
i papAnu2.chr13                C 0 I 47
s chlSab2.chr14                90916065 4 - 107702431 atat-
i chlSab2.chr14                C 0 I 1
e gorGor3.chr9                 48923301 2640 + 121947112 I
e rheMac3.chrUn_JH290316          30615 141 -     44534 I
e calJac3.chr14                90630381 1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=322502.000000
s hg38.chr14_KI270725v1_random    84655 178 +    172810 acatattaacttacaggatcacaaggtcccacagtaggctgtctgcaggcatgaggaatgaggagtaaggagagccagctcgagtctcaaaactaaagaacttggagtccgatgttcaagggtaggaagcatccagcacgggagagagatgtaggctgggaggctgggccagactcac
s panTro4.chrUn_GL393527         160452 178 +    341619 acatattaacttacaggatcacaaggtcccacagtaggctgtctgcaggcatgaggagtgaggagtaaggagagccagctcgagtctcaaaactaaagaacttggagtccgatgttcaagggtaggaagcatccagcacgggagagagatgtaggctgggaggctgggccagactcac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2094228 178 +  72422247 acatattaacttacaggatcacaaggtcccacagtaggctgtctgcaggcatgaggagtgaggagtaaggacagccagctcgagtctcaaaactaaagaacttggagtccgatattcgagggtaggaagcatccagcacgggagagagatgtaggctgggaggctgggccagactcac
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          30756 178 -     44534 ACAtattaacttacaggttcacaaggtcccactgtaggctgtctgcaagcatgaggagtgaggagcaaggagagtcagcttgagtttcaaaaccgaagaacttggagtccaatgttcgaggtcaggaagcatccagcacaggagagagatgtaggctgggaggctgggcaagactcac
i rheMac3.chrUn_JH290316       I 141 C 0
s macFas5.chr10                61754254 178 -  96509753 ACAtattaacttacaggttcacaaggtcccactgtaggctgtctgcaagcatgaggagtgaggagcaaggagagtcagcttgagtttcaaaaccgaagaacttggagtccaatgttcgaggtcaggaagcatccagcacaggagagagatgtaggctgggaggctgggcaagactcac
i macFas5.chr10                I 49 C 0
s papAnu2.chr13                23360855 178 - 128036923 acatattaacTTACAGGTTCACAAGGTCCCACTGTAGGCTGTCTGCAAGTATGAGGAGGGAGGAGCAAGGAGAGTCAGCTTgagtttcaaaactgaagaacttggagtccaatgttcgaggtcaggaagcatccagcacaggagagagatgtaggctgggaggctgggcaaGACTcac
i papAnu2.chr13                I 47 C 0
s chlSab2.chr14                90916070 178 - 107702431 acatattagcttacaggttcacaaggtcccactgtaggctgtctgcaagcatgaggagtgaggagcaaggagagtcagcttgagtttcaaaactgaagaacttggagtccaatgttcgaggtcaggaagcatccagcacaggagagagatgtaggctaggaagctgggaaagactcac
i chlSab2.chr14                I 1 C 0
e gorGor3.chr9                 48923301 2640 + 121947112 I
e calJac3.chr14                90630381   1 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=1058516.000000
s hg38.chr14_KI270725v1_random    84833 499 +    172810 tttttcactttttttctgcctgctt----tatattca--ctggcagctgatgaaatggtgccc--------------atagattaa------------gcagggggtctgccttccccagactactgactcaaatattaatctcctttggcaacaccctcacagactcacccaggagcaatgcttacatccttcaatgtaatcaagttgacaatctgtattaactatcacaGGATTACAGACCTGAGCCATCACACATAGTGTTATTGTATATTTCATACAATTTCCTGATTTTCCCATTTTATCTGTGACTTAATAAAGTTTTTCAGCTATGACCCCAAA----CTGTTAATACTTG-AAAGCACATTCAAATGTATTTTGCAACAATTCGTAACTGGCAAAATGTTGAGCCTTGTGGAAAGAGTCACCTTACTTCCCCGTCAGCTGTCAATTCCCCATCACTACTATCACTTCTGGGAGCACATTTTCC--------------------AAAACTCCTTTTCTCTCTATGGTTTCTTTAGAGTTGCTCCACGAG
s panTro4.chrUn_GL393527         160630 498 +    341619 tttttcactttttt-ctgcctgctt----tatattca--ctggcagctgattaaatggtgccc--------------atagattaa------------gtagggggtctgccttccccagactactgactcaaatactaatctcctttggcaacaccctcacagacacacccaggagcaatgcttacgtccttcaatgtaatcaagttgacaatcagtattaactatcacaGGATTACAGACCTGAGCCATCACACACAGTGTTATTGTATATTTCATACAATTTCTTGATTTTCCCATTTTATCTGTGACTTAATAAAGTTTTTCAGCTACGACCCCAAA----CTGGTAATACTTG-AAAGCACATTCAAATGTATTTTGCAACAATTCGTAACTGGCAAAATGTTGAGCCCTGTGGAAAGAGTCACCTTACTTCCCCGTCAGCTGTCAATTCCCCATCATTACTATCACTTCTGGGAGCACATTTTCC--------------------AAAACTCCTTTTCTCTCTATGGTTTCTTTAGAGTTGCTCCATGAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2094406 497 +  72422247 tttttcactttttt-ctgcctgctt----tatattca--ctggcagctgattaaatggtgccc--------------atagattaa------------gtagggggtctgccttccccagactactgactcaaatattaatctcctttggcaacaccctcacagacacacccaggagcaatgcttacatccttcaatgtaatcaagttgacaatcagtattaactatcacaGGATTACAGACCTGAGCCATCACACACAGTGTTATCGTATATTTCATACAATTTCCTGATTTTCCCACTTTATCTGTGACTTAATAAAGTTTTTCAGCTATGACCCCAAA----CTGGTAATACTTG-AAAGCACATTCAAATGTATTTTGCAACAATTCGTAACTGGCAAAATGTTGAGCCTTGTGGAAAGAGTCACCTTACTTCCCCGTCAGCTGTCGATTCCCCATCATTACTATCACTTCTGGGAGCACATTTTCC--------------------AAAACTCCTTTTCTCTCTATGGTTTCTTTAGAG-TGCTCCATGAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          30934 537 -     44534 tttttcaacttttt-ctgcctgctt----tatattca--ctggcagctgattagatgcttcatattcactggcagagatagattaa-------gtgggggggggggtctgccttccccagcctactgactcaaatatcaatctcctttggcaggaccctcacagacacacccaggagcaatgcttacatccttcaaccaagttaaattgacaatcagtattaactatcacaGGATTACAGACCTGAGCCATCACACACAGCCTTATTGCATATTTCATACAATTTCCTGATTTTCCCATTTTTTCTGTGACTTAATAACATTTTCCAGCTGTGACCTCAAA----CTGGTAATACTTG-AAAGGACATTCAAATGTATTTTGTGACAATTCGTAACTGGCAATATGTTGAGCCTTGTGGAAAGACGCACCTTACTTCCCTGTCAGCTGTCAATTCCCCATCATTACTATCACTTCTGGGAGCACACTTTCCTTTTCTCCCAGAAAAGGGCACAAACTCCTTTTCTCTCTATGGTTTCTTTAGAGTTGCTCAATGAG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61754432 541 -  96509753 tttttcaacttttt-ctgcctgctt----catattca--ctggcagctgattagatgcttcatattcactggcagagatagattaa---gtgtgtgggggggggggtctgccttccccagcctactgactcaaatatcaatctcctttggcaggaccctcacagacacacccaggagcaatgcttacatccttcaaccaaattaaattgacaatcagtactaactatcacaAGATTACAGACCTGAGCCATCACACATAGCCTTATTGCATATTTCATACAATTTCCTGATTTTCCCATTTTATCTGTGACTTAATAACATTTTCCAGCTGTGACCTCAAA----CTGGTAATACTTG-AAAGGACATTCAAATGTATTTTGTGACAATTCGTAACTGGCAATATGTTGAGCCTTGTGGAAAGACGCACCTTACTTCCCTGTCAGCTGTCAATTCCCCATCATTACTATCACTTCTGGGAGCACACTTTCCTTTTCTCCCAGAAAAGGGCACAAACTCCTTTTCTCTCTATGGTTTCTTTAGAGTTGCTCAATGAG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23361033 542 - 128036923 tttttcaacttttt-ctgcctgctt----catattca--ctggcagctgattagatgctTCATATTCACTGGCAGAGATAGATTAA---GTGGAGGAgggggggagtctgccttccccagcctaCTGACTCAAATATCAATCTCCTTTGGCAggaccctcacaggcacacccaggagCAATGGTTACATCCTTCAACCAAATTAAATTGACAAtcagtattaactatcacaagattacagacctgagccatcACACATAGCCTTATTGCATATTTCATACAATTTTCTGATTTTCCCATTTTATCTGTGACTTGATAACATTTTCCAGCTATGACCCCAAA----CTCATAATACTTGAAAAGGACATTCAAATGTATTTTGCGACAATTCGTAACTGGCAATATGTTGAGCCTTGTGGAAAGACTCACCTTACTTCCTTGTAAACTGTCAATTCCCCTTCATTACTATCACTTCTGGGAGCACACTTTCCTTTTCTCCCAGAAAAGGGCACAAACTCCTTTTCTCTCTATGGTTTCTTTAGAGTTGCTCAATGAG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90916248 544 - 107702431 tttttcaacttttt-ctgcctgctt----catattca--ctgacagctgattagatgcttcatattcactggcagagatagattaagttgtgggcggggggggaggtctgccttccccagcctactgactcaaatatcaatctcctttggcaggaccctcacagacagacccaggagcaatggttacatccttcaaccaaattaaattgacaatcagtattaactatcacaGGATTACAGACCTGAGCCATCACACATAGCCTTATTGCATATTTCACACAATTTCCTGATTTTCCCATTTTATCTGTGACTTAATCACATTTTCCAGCTATGACCCCAAA----CTGCTAATACTTG-AAAGGACATTCAAATGTATTTTGCGACAATTCGTAACTGGCAATATGTTGAGCCTTGTGGAAAGACTCACCTTACGTCCCTGTCAGCTGTCAATTCCCCATCATTACTTTCACTTCTGGGAGCACACTTTCCTTTTCTCCCAGAAAAGGACACGAACTCCTTTTCTCTCTCTGGTTTCTTGAGAGTTGCTCAATGAG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90630382 508 - 108792865 tttttcacattttt-ctgccttcttgtagtctagccatgctggcagttgattggattgtgtccac------------ccagatgaa-------------gggtggatctgccttccccagtccactgactcaaatattcctctcctttagcaacaccctcgcagacacagccaggaacaatacttacatccttcagtcttatcaagttgacactcggtattaactatcacaGAATTACAGGCTCAAACCATCACACCCAAACTCATTGTATATTTTATACAATTTCCTAATTTTCCAATTTTATCTGTGACATAATAAAGTTTTCTTGCTGTGACCCCCAACTTGCTTGTAACACTTG-AAAGCACATTTAAATGTATTCTG-GACAATTTTTAACTGGCAAATTTTTGAGACTTATGGAAAGAGTCACCTTACTTGCCTGTCAGCTGTCAATTCCCCATCATTACTATCACTTctggaagcacatttcct--------------------aaaaccccttttctttctctggtttctttagagtttctcaatgag
i calJac3.chr14                I 1 I 5
e gorGor3.chr9                 48923301 2640 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=34706.000000
s hg38.chr14_KI270725v1_random    85332 24 +    172810 GTCACAATAAGTTACAACTAATTA
s panTro4.chrUn_GL393527         161128 24 +    341619 GTCACAATAAGTTACAACTAATTA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2094903 24 +  72422247 GTTGCAGTAAGTTACAACTAATTA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          31471 24 -     44534 ATTGCAATAAGTTACAACTTACCA
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61754973 24 -  96509753 ATTGCAATAAGTTACAGCTTACCA
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23361575 24 - 128036923 ATTGCAATAAGTTACAACTTACCA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90916792 24 - 107702431 ATTGCAATAAGTTACAACTTACCT
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 48923301 2640 + 121947112 I
e calJac3.chr14                90630890  5 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=1013948.000000
s hg38.chr14_KI270725v1_random    85356 466 +    172810 CTGTCATGAGATTGGGAAGTCAGAGTGGTGGATTCATGTACACTGACACCTGAAGTAAAGCACATGCTGTTAGGTGTGGACTGGAGAATCACCTGGAGATGTGCTGCAGGCAGCTGAGAGCATCAGCACCCCCAGCTCTGGGCTTCCCAGACAGGACTGAGGATCATCACAC-GGTGTTCAGCACATACCACCAGGGGCAGGTGAACCCTGGCTTCTGAAGTAACACCTGAGAATCCCCTGTGTCTAGTACCTGCTTCATGAATAACACTCCATAGGCTTCAGAAAGACTGTGGTT----TAGACTCTAATTTATTCAACTTGAATAATTTCTCCTTGAAATACTGAGAATAGCTTCTCTTTTGCTGTACAAATTCCGATTATCCCATAACACAGAC--TCCTCAGCTGGACTTATCTCTCTTCTTT-----ATTCAGTCAGGACAGTCATTGTCACGTCTTTTCTGCTGGGGATGAG
s panTro4.chrUn_GL393527         161152 466 +    341619 CTGTCATGGGATTGGGAAGTCAGAGTGGTGGATTCATGTACACTGACACCTGAAGTAAAACACATGCAGTTAGGTGTGGACTGGAGAATCGCCTGGAGATGTGCTGCAGGCAGCTGAGAGCATCAGCACCCCCAGCCCTGGGCTTCCCAGACAGGACCGAGGATCATCACAT-GGTGTTCAGCACATATCACCAGGGGCAGGTGCACCATGGCTTCTGAAGTAGCACCTGAGGATCCCCTGTGTCTAGTACCTGCTTCATGAATAACACTCCATAGGCTTTGGAAAGACTGTGGTT----TAGACTCTAATTTATTCAACTTGAATAATTTCTCCTTGAAATACTGAGAATAGCTTCTCTTCTGCTGTACAAATTCCGATTATCCCATAACACAGAC--TCCTCAGCTGGACTTATCTCTCTTCTTT-----ATTCAGTCAGGACAGGCATTGTCACGTCTTTTCTGCTGGGGATGAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2094927 466 +  72422247 CTGTCATGAGATTGGGAAGTCAGAGTGGTGGATTCATGTACACTGACACCTGAAGTAAAACACACGCAGTTAGGTGTGGACTGGAGAATCACCTGGAGACGTGCTGCAGGCAGCGGAGAGCATCAGCACCCCCAGCCCTGGGCTTCCCAGACAGGACTGAGGATCATCACAC-AGTGTTCAGCACATACCACCAGGGGCAGGTGCACCCTGGCTTCTGAAGTAGCACCTGAGAATCCCCTGTCTCTAGTACCTGCTTCATGAATAACATTCCATAGGCTTCGGAAAGACTGTGGTT----TAGACTCTAATTTATTCAACTTGAATAATTTCTCCTTGAAATACTGAGAATAGCTTCTCTTTTGCTGTACAAATTCCGATTATCCCATAACACAGAC--TCCTCAGTTGGACTTATCTCTCTTCTTT-----ATTCAGTCAGGACAGGCATTGTCATGTCTTTTCTGCTGGGGATGAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          31495 467 -     44534 CTGTCATGAGATTGGGAAGTCAGAGTGGTGGATTCATGTAAACTGACACCTGAAGTAAAACACATGCAGTTAGGTGTGGACTGGAGAATCACCTGGAGACATGCTGCAGGCAGCTGAGAGCATCAGCACCCCC-GCCCTGGGCTTCTCAGACAGGTCTGAGGGTCATCACAC-GGTACTCAGCACATACCACCAGGGGCATGGGCACTCCGGCTTCTGGAGGAGGACCTGAGAATCCCCTGTCTCTAGTACGTTCTTCATGAATAACAGACGGTAGGCTTCAGAAAGACAGTGGTT----TAGACTCTAATTTATTGAACTCGAACAATTTCTCCTTGAAATACTGAGAATAGCTTCTCTTTTGCTGTAGAAATTCCAATTGTCCCATAACACAGACTATCCTCAGGTGAACTTATCTCTCTTATTT-----ATTCTGCCAAGACAGACATTGTCACGCCTTTTCTGCTGGGGATGAG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61754997 467 -  96509753 CTGTCATGAGATTGGGAAGTCAGAGTGGTGGATTCATGTAAACTGACACCTGAAGTAAAACACATGCAGTTAGGTGTGGACTGGAGAATCACCTGGAGACATGCTGCAGGCAGCTGAGAGCATCAGCACCCCC-GCCCTGGGCTTCTCAAACAGGTCTGAGGGTCATCATAC-GGTACTCAGTACATACCACCAGGGGCAGGGGCACTCCGGCTTCTGGAGGAGGACCTGAGAGTCCCCTGTCTCTAGTACCTGCTTCATGAATAACATACGGTAGGCTTCGGAAAGACTGTGGTT----TAGACTCTAATTTACTGAACTTGAACAATTTCTCCTTGAAATACTGAGAATAGCTTCTCTTTTGCTGTAGAAATTCCAATTGTCCCATAACACAGACTATCCTCAGGTGAACTTATCTCTCTTATTT-----ATTCTGCCAAGACAGACATTGTCACGTCTTTTCTGCTGGGGATGAG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23361599 467 - 128036923 CAGTCATGAGATTGGGAAGTCAGAATGGTGGATTCATGTAAACTGACACCTGAAGTAAAACACATGCAGTTAGGTGTGAACTGGAGAATCACCTGGAGACGTGCTGCAGGCAGCCGAGAGCATCAGCAACCCC-ACCCTGGGCTTCCCAAACAGGTCTGAGGGTCATCACAC-GGTACTCAGCACATACCACCAGGGGCAGGGGCACTCCGGCTTCTGGAGGAGGACCTGAGAATCCCCTGTCTCTAGTACCTGCTTCATGAATAACATATGGTAGGCTTTGGAAAGACTGTGGTT----TAGACTCTAATTTATTGAACTTGAACAATTTCTCCTTGAAATACTGAGAATAGCTTCTCTTTTGCTGTAGAAATTCCAATTGTCCCATAACACAGACTATCCTCAGGTGAACTTATCGCTCTTATGT-----ATTCTGCCAAGACAGACATTGTCACGTCTTTTCTGCTggggatgag
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90916816 467 - 107702431 CTGTCATGAGATTGGGAAGTCAGAATGGTGGATTCATGTAGACTGAGACCTGAAGTAAAACACATGCAGTTAGGTGTGGACTGGAGAATCACCTGGAGAGGTGCTGCATGCAGCTGAGAGCATCAGCAACCCC-TGCCTGGGCTTGCCAAACAGGTCTGAGGGTCATCACAC-GGTACTCAGTACATACGACCAGGGGCAGGGGCACTCCGGCTTCTGGAGGAGGACCTGAGAATCCCCTGTCTCTAGTACCTGCTTCATGAATAACATATGGTAGGCTTTGGAAAGACAGTGGTT----TAGACTCTAATTTATTGAACTTGAACAATTTCTTCTTGAAATACTGAGAACAACTTCTCTTTTGCTGTAGAAATTCCAATTGTCCCATAACACAGACTATCCTCAGGTGAACTTATCGCTGTTATTT-----ATTCTGCCAAGACAGACATTGTCACATCTTTTCTGCTGGGGATGAG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90630895 475 - 108792865 cttccatgagatttggaagtcagaGTAGTGGATTCATGTACATTGACACCTGAAGTAAAACATGTGGAGTTAGGTGTGGATGGAATAATCACCTACAGATGTGCTGCAGGCAGCTGAGAGCATCAGCACCCCCGGCCCTGGGCTTCGCAGACAGGTCTGA-GATCATCACATGGGTACTCAGCACATACCAGCAGAGGCAGCTGCACTCTGGCTTCTGGAGGGGCACCTGAGACTCCCCTGTCTCTAGTACCTGCTTCATGAATAACATACTGCAGGCTTCAAAAAAACTGTCTTTTTTATTGGCTCCAATTTATTCAACTTCAACAATTTCTCCTTGGAATACCAAGAGTAGCTACTCTTTTGCTGTATGAATTTCAATTATCTCATTATATAGAC--TCCTCAAGTGAACTTATCTCTCTTTTTCATTGAATTAAGACAAGACAAGCACTGTCACATCTTTTCTGCTGGGGATGAG
i calJac3.chr14                I 5 C 0
e gorGor3.chr9                 48923301 2640 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=-1309.000000
s hg38.chr14_KI270725v1_random       85822 3 +    172810 -GAT
s panTro4.chrUn_GL393527            161618 3 +    341619 -GGC
i panTro4.chrUn_GL393527          C 0 C 0
s ponAbe2.chrUn                    2095393 3 +  72422247 -GGC
i ponAbe2.chrUn                   C 0 C 0
s rheMac3.chrUn_JH290316             31962 3 -     44534 -GGA
i rheMac3.chrUn_JH290316          C 0 C 0
s macFas5.chr10                   61755464 3 -  96509753 -AGA
i macFas5.chr10                   C 0 C 0
s papAnu2.chr13                   23362066 3 - 128036923 -aga
i papAnu2.chr13                   C 0 C 0
s chlSab2.chr14                   90917283 3 - 107702431 -AGA
i chlSab2.chr14                   C 0 C 0
s calJac3.chr14                   90631370 3 - 108792865 -GGC
i calJac3.chr14                   C 0 C 0
s tupBel1.scaffold_112887.1-90564    50678 3 -     90564 TAG-
i tupBel1.scaffold_112887.1-90564 N 0 N 0
e gorGor3.chr9                    48923301 2640 + 121947112 I
e nomLeu3.chrUn_GL397743_2           74186 0 +    112108 I

a score=2352490.000000
s hg38.chr14_KI270725v1_random    85825 1050 +    172810 GAAAGAGGCTTAGGGTTCAGAGGAACCTCCCTGGCCTCCTCTAGGAAAATCTCCCTATGACTTTCCAAACCTGACTGAGTTTGAGAACTTTTCTCAGCAGACAGAGGCACCAGAAGGAGC-ATTGGGGCAGCCCAGCCTCATGCATCTGCTTCCTT-GGGGTTTATGTTATGACTTGTAACACTGTGGGAGGGGTACTGTCACTCTGTTGACAGTAATAAGTTGCAAAATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGTAATCTGTCCCAGATCCACTGTCACTGAACCGAGAGGGAATCCCACTTTGCAGACTGGATGCAGCATAGATCAGGAGCTTAGGAGTTTTCCCTGGTTTCTGCTGATACCAATTTAAATTATTGCTAATGCCCTGACTCGCCCGGCAAGTGATGGTGACTCTGTCTCCTACAGATGCAGACAGGGAGGATGGAGACTGGGTCATCTGGATGTCACATCTGGCACCTGAAGTTGGAAACATAAAAACAAATATTCTTGCAATTAATCATGTTATCAGAGGACTTCCCTGAAGTTCCAGACAGTACTGAGCACACTGAC-CAAGTATAATCCTAGTGTTCTCC-TTCCTTACCTGGCAGCCAGAGCACCAGGAGCCCCAGGAGCTGAGTGGGGG-CCCTCACATCTGTGCTGTGTCCTGACTGGGACTGA---CTCCTGCACCGGGTGTGACCAGCCTATAAA-AAGTCTTCAGGGCAGGGGGTTGTGCTTTAGGAACAGGCAAATCAGCAGGGGATGGGGCAGGCTGAGCACAGCTGCGGGGCTGGCTCATTTCAGTAACTCAGCACAGGGGCGCAGTATCCCCAGAGTCCCAGGTCAGACCAGGGCAGCACAGATTTACCTTGAAAGAATACATTTCTCATTGGTGGCCATACGGTTACAGAACATATTTTTGGAGTGAATTTTCAAA--------------------------------ATTTTAAATCAACCTAAGCCTAGATTAAATAATATA-TTTATACTTGTATTAGGAGTGTATAGGGAAGCATCACTTTTGGCAGAAAATTTACAATAAAGTTGTAGAATGTG
s panTro4.chrUn_GL393527         161621 1050 +    341619 GAAAGAGGCTTAGGGTTCAGAGGAACCTCCCTGGCCTCCTCTAGGAAAATCTCTCAATGACTTTCCAAACCTGACTGAGTTTGAGAACTTCCCTCAGCAGATAGAGGCACCAGAAAGAGC-TCTGGGGCAGCCCAGCCTCACACATCTGCTTCCTT-GGGGTTTATGTTATGACTTGTAACACTGTGGGAGGGGTACTGTCACTCTGTTGACAGTAATAAGTTGCAAAATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGTAATCTGTCCCAGATCCACTGTCACTGAACCGAGAGGGAATCCCACTTTGCAGACTGGATGCAGCATAGATCAGGAGCTTAGGAGTTTTCCCTGGTTTCTGCTGATACCAATTTAAATTATTGCTAATGCCCTGACTCGCCCGGCAAGTGATGGTGACTCTGTCTCCTACAGATGCAGACAGGGAGGATGGAGACTGGGTCATCTGGATGTCACATCTGGCACCTGAAGTTGGAAACATAAAAACAAATATTCTTGCAATTAATCATGTTATCAGAGGACTTCCCTGAAGTTCCAGACAGTACTGAGCACACTGAC-CGAGTATAATCCTAGTGTTCTCC-TTCCTTACCTGGCAGCCGGAGCACCAGGAGCCCCAGGAGCTGAGTGGGGG-CCCTCACGTCTGTGCTGTGTCCTGACTGGGGCTGA---CTCCTGCACTGGGTGTGACCAGCCTATAAA-AAGTCTTCAGGGCAGGCGGCTGCGCTCTAGGAACAGGCAAATCAGCAGGGGATGGGGCAGGCTGAGCACAGCTGCAGGGCTGGCTCATCTCAGTAACTCAGCACAGGGGCGCAGTACCCCCAGAGTCCCAGGTCAGACCAGGGCAGCACAGATTTACCTTGAAAGAATACATTTCTCATTGGTGGCCATACAGTTACAGAACATATTTTTGGAGTGAATTTTCAAA--------------------------------ATTTTAAATCAACCTAAGACTAGATTAAATAATATA-TTTATACTTGTATTAGGAGTGTATAGGAAAGCATCATTTTTGGCAGAAAATTTACAATAAAGTTGTAGAATGTG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2095396 1051 +  72422247 GAAAGAGGCTTAGGGTTCAGAGGAACCTCCCTGGCCTCCTCTAGGAAAATCTCCCAATGACTTTCCAAACCTGACTGAGTTTGAGAACTTCCCTCAGCAGATAGAGGCACCAGAAGGAGC-ATTGGGGCAGCCCAGCCTCACACATCTGCTTCCTT-GGGGTTTATGTGATGACTTGTAACACTGTGGGAGGGGTACTGTAACTCTGTTCACAGTAATAAGTTGCAAAATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGTAATCTGTCCCAGATCCACTGTCACTGAACCGAGAGGGAATCCCACTTTGCAGACTGGATGCAGCATAGATCAGGAGCTTAGGAGTTTTCCCTGGTTTCTGCTGATATCAATTTAAATTATTGCTAATGCCCTGACTCTCCCGGCAAGTGATGGTGACTCTGTCTCCTACAGATGCAGACAGGGAGGATGGAGACTGGGTCATCTGGATGTCACATCTGGCAACTGAAGTTGGAAACATAAAAACAAATATTCTCGCAATTAATCATGTTATCAGAGGACTTCCCTGAAGTTACAGACCGTACTGAACACGCTGAC-CGAGTATAATCCTAGTGTTCTCC-TTCCTTACCTGGCAGCCAGAGCAGCAGAAGTCCCAGGAGCTGAGTGGGGGCCCCTCAAGTCCATGCTGTGTCCTGACTGGGACTGA---CTCCTGCACAGGGTGTGACCAGCCTATAAA-AAGCCTTCAGGGCAGGGGGCTGTGCTCTAGGAACATGCAAATCAGCAGGGGATGGGGCAGGCTGAGCACAGCTGCAGGGCTGGCTCATCTCAGTAACTCAGCACAGGGGCGCAGTATCCCCAGATTCCCAGGTCAGACCAGGGCAGCACAGATTTACCTTGAAAGAATACATTTCTCATTGGTGGCCATACGGTTACAGAACATATTTTTGGAGTGAATTTTCAAA--------------------------------ATTTTAAATCAACCTAAGACTAGATTAAATAATATA-TTTATACTTGTATTAGGAGTGTATAGGAAAGCATCATTTTTGGCAGAAAATTTACAATAAAGTTGTAGAATGTG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          31965 1075 -     44534 GAAAGAGGCTTAGGGTTCAGAGGAACCTCCCTGGCCCCCTCTAGGAAAATCTCCCAATGACTTTCAAAACCTGACTGAGTGTGAGAAATGCCCTCAGCAGATAGAGGCACCAGAAGGAGC-CCTGGGGCAGCCCAGCCTCACACATCTGCTTCCTTGGGGGTTTCTGTTATGACTTGTAACACTGTGGGAGGGTAACTATAACCCT--------TAATAAGTTGCAAAATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGAAATCTGTCCCAGATCCACTGCCGCTGAACCGAGAGGGAATCCCACTTTGCAAACTGGATGCCTTATAGATCAGGAGCTTAGGAATTTTCCCTGGTTTCTGCTGATACCAATTTAAATAATTGCTAAGGCTTTGACTCGCCTGGCAAGTAATGGTCACTCTGTCTCCTACAGATGCAGACAGAGAGGATGGAGACTGGGTCATCTGGATGTCACATCTGGCACCTGAGGTTGGAAACATAAAAACAAATATTCTTACAGTTAATCATGTTATCAGAGGATTTACCTCAAGAGTCAGACAGTACAGTGCACACTGAG-TGAGTACATTCTTAGTGTTCTCC-TTCCTTACCTGGGAGCCAGAGCAGCAGGAGCCCAAGGAGCTGAGCGGGGA-CCCTCATGTCCATGCTATGTCCTGACTGAGACTGA---CTCCTGCACAGGGTGTGACCAGCCTATAAAAAAGTCTTCGGGGCAGAGGGTTGTGCTCTGGGAACATGCAAATCAGCAGGGGATGGGACAGACTGAGCACAGCTGCAGGGCTGGCTCATCTCAGCAACTCAGCACAGGG--GCAGTGTCCCCAGAGTCCCAGGTCAGACTAGGACAGCGCAGATTTGCCTTGAGAGAATACCTTTCTCCTTGGGGACCATACGGTTACAGAACATATTTTTTGAGTTAATTTTCAAAATTGTAATGAACCTAAGACTAGAACTCATTTAATTTTAAATGAACCTAAGACTAGATTAAATAACATATTTTACACTTGTGTTAGGAGTGTATAGGAAAGCATCATTTTTGGCAGAAAATTCATAATAAAGTTGTAGAACGTG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61755467 1085 -  96509753 GAAAGAGGCTTAGGGTTCAGAGGAACCTCCCTGGCCCCCTCTAGGAAAATCTCCCAATGACTTTCAAAACCTGACTGAGTGTGAGAAATGCCCTCAGCAGATAGAGGCACCAGAAGGAGC-CCTGGGGCAGCCCAGCCTCACACATCTGCTTCCTTGGGGGTTTCTGTTATGACTTGT-ACACTGTGGGAGGGTAACTATAACCCTGTTGACAGTAATAAGTGGCAAAATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGAAATCCGTCCCAGATCCACTGCCGCTGAACCGAGAGGGAATCCCACTTTGCAAACTGGATGCCCTATAGATCAGGAGCTTAGGAATTTTCCCTGGTTTCTGCTGATACCAATTTAAATAATTGCTAAGGCTTTGACTCGCCTGGCAAGTAATGGTCACTCTGTCTCCTACAGATGCAGACTGAGAGGATGGAGACTGGGTCATCTGGATGTCACATCTGGCACCTGAGGTTGGAAACATAAAAACAAATATTCTTACAGTTAATCATGTTATCAGAGGATTTACCTCAAGAGTCAGACAGTACAGTGCACACTGAG-TGAGTACATTCTTAGTGTTCTCC-TTCCTTACCTGGGAGCCAGAGCAGCAGGAGCCCAAGGAGCTGAGCGGGGA-CCCTCATGTCCATGCTGTGTCCTGACTGAGACTGACTCCTCCTGCACAGGGTGTGACCAGCCTATAAAAAAGTCTTCGGGGCAGAGGGTTGTGCTCTGGGAACATGCAAATCAGCAGGGGATGGGACAGACTGAGCACAGCTGCAGGGCTGGCTCATCTCAGCAACTCAGCACAGGG--GCAGTGTCCCCAGAGTCCCAGGTCAGACTAGGACAGCGCAGATTTGCCTTGAGAGAATACCTTTCTCCTTGGGGACCATACAGTTACAGAACATATTTTTTGAGTGAATTTTCAAAATTGTAATGAACCTAAGACAAGAACTCATTTAATTTTAAATGAACCTAAGACTAGATTAAATAACATATTTTACACTTGTGTTAGGAGTGTATAGGAAAGCATCATTTTTGGCAGAAAATTCATAATAAAGTTGTAGAACGTG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23362069 1083 - 128036923 gaaagaggcttaGGGTTCAGAGGAACCTCCCTGGCCCCCTCTAGGAAAATCTCCCAATGACTTTCAAAACCTGACTGAGTGTGAGAAATGCCCTCAGCAGATAGAGGCACCAGAAGGAGC-CCTGGGGCAGCACAGCCTCACACATCTGCTTCCTTGGGGGTTTATGTTATGACTTGTAACACTGTGGGAGGGTAACTATAACCCTGTTGACAGTAATAAGTGGCAAAATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGTAATCCGTCCCAGATCCACTGCCGCTGAACCGAGAGGGAATCCCACTTTGCAAACTGGATGCAGCATAGATCAGGAGCTTAGGAATTTTCCCTGGTTTCTGCTGATACCAATTTAAATAATTGCTAAGGCTTTGACTCACCTGGCAAGTAATGGTCACTCTGTCTCCTACAGATGCAGACAGGGAGGATGGAGACTAGGTCATCTGGATGTCACATCTGGCACCTTAGGttggaaacataaaaacaaatattcttacAGTTAATCATGTTATCAGAGGATTTACCTGAAGGGTCAGACAGTACAGAGCACACTGAG-TGAGTACATTCTTAGTGTTCTCC-TTCCTtacctgggagccagagcagcAGGAGCCCAAGGAGCTGAGCGGGGA-CCCTCATGTCCATGCTGTGTTCTGACTGAGACTGA---CTCCTGCACAGGGTGTGACCAGCCTATAAAAAAGTCTTCGGGGCAGAGGGTTGTGCTCTGGGAACATGCAAATCAGCAGGGGATGGGACAGACTGAGCACAGCTGCAGGGCTGGCTCATCTCAGCAACTCAGCACAGGG--GCAGTGTCCCCAGAGTCCCAGGTCAGACTAGGACAGCGCAGATTTGCCTTGAGAGAATACCTTTCTCCTTGGGGACCATACGGTTACAGAACATattttttgagttgattttcaaaATTGTAATGAACCTAAGACTagaactcatttaattttaaatgaaccTAAGACTagattaaataacatattttacacTTGTGTTAGGAGTGTATAGGAAAGCATCATTTTTGGCAGAAAATTCATAATAAAGTTGTAGAACGTG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90917286 1083 - 107702431 GAAAGAGGCTTAGGGTTCAGAGGAACCTCCCTGGCCCCCTCTAGGAAAATCTCCCAATGACTTTCAAAACCTGACTGAGTGTGAGAAATGCCCTCAGCAGATAGAGGCACCAGAAGGAGC-CCTGGGGCAGCCCAGCCTCACATGTCTGCTTCCTTGGGGGTTTCTGTTATGACTTGTAACACTGTGGGAGGGTAACTATAACCCTGTTGACAGTAATAAGTGGCAAAATCTTCAGGCTGCAGGCTGCTGATGGTGAGAGTGTAATCCGTCCCAGATCCACTGCCGCTGAACCGAGAGGGAATTCCACTTTGCAAACTGGATGCCCTATAGATCAGGAGCTTAGGAATTTTCCCTGGTTTCTGCTGATACCAATTTAAAAAATTGCTAAGGCTCTGACTCCCCTGGCAAGTAATGGTCACTCTGTCTCCTACAGATGCAGACAGAGAAGATGGCGACTGGGTCATCTGGATGTCACATCTGGCACCTGAGGTTGGAAACATAAAAACAAATATTCTTACAGTTAATCATGTTATCAGAGGATTTACCTGAAGAGTCAGACAGTACAGAGCACACTGAA-TGAGTACATTCTTAGTGTTCTCC-TTCCTTACCCGGGAGCCAGAGCAGCAGGAGCCCGAGGAGCTGAGCGGGGA-CCCTCATGTCCATGCCGTGTCCTGACTGAGACTGA---CTCCTGCACAGGGTGTGATCAGCCTATAAAGAATTCTTCAGGGCAGAGGGTTGTGCTCTGGGAACATGCAAATCAGCAGGGGATGGAGCAGGCTGGGCACAGCTGCAGGGCTGGCTCATCTCAGCAACTCAGCACAGGG--GCAGTGTCCCCAGAGTCCCAGGTCAGACCAGGGCAGTGCAGATTTACCTTGAGAGAATACCTTTCTCCTTGGGGACCATACGGTTACAGAACATATTTTTTGAGTTAATTTTCAAAATTTTAATGAACCTAAGACTACAACTCATTTCATTTTAAATGAACCTAAGACTAGATTAAATAACATATTTTACACTTGTGTTAGGAGTGTATAGGAAAGCATCATTTTTGGCAGAAAATTCATAATAAAGTTGTAGAACGTG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90631373 1036 - 108792865 GGAAGAGGCTTAGGATTTAGAGACGCCTCCATGACCCCCTCTATAATAATCTCCCAATGACTTTCAAAAC----CTGAGTATGAGAAATGCTCTCAGGAGATAAAGGCACCAGGAGGAGCATCTGGGGCAGCCTTGCCTCACACATCTGCTTCCTTGGGGGTTTATGTTATGACTTGTAACACTGTGGGAGGAGTACTGTAATGCTGTTGACAGTAATAAGTTGCAACATCTTCAGACTGCAGGCTGCTGATGGTGAGAGTGTAGTCTGTCCCAGATCTACTGCCACTGAACCGAGAGGGAATCCCAGTTTGCAAACTAGATGCAGCATAGATCAGGAGCCTAGGAGTTTTCCCTGGTTTCTGCTGATACCAGGCTAAATAACCTCTAATGTCCTGACTCGCCCGGCAAGTAATGGTGACTCTGTCTCCTACAGATGCAGACAGGGAGGATGGAGACTGCGTCATCTGGATGTCACATCTGGTACCTGAGATTGGAAACATAAAAACAAATATTCATACTATTAATCATGTTATCAGAGGACTTCCCTGTAGTTCCAG-CAGTACTGAGCACACTGGGCTGAGTAAATTCCTAGTGTTCTCCTTTCCTTACCTGGGAGCCAGAGCAGCAGGAGCCCCAGGAGTTGAGCAGGGA-CCCTCATGTCCATACTGTGTCCTGCGTGAGACTGA---CTACTGCACGGGGTGTGACCAGCCTATAAAACAGTCTTCAGGGCAGGGGTCTGTGCTCTGGG-ACATGCAAATCAGCAGGGGATGGGGCAGGCTGGGCACAGCTGCAGGGCTGGCTCATCTCAGTAACTCAGCATGGG---GCAGTGTCCCCTG-------GGTCAGACCAGGA-AGCTCAGATTTACCTTGAGAAAATACATTGTTCTTTGA-GGCCACATGGTTACAGAACACA-TTTTGGGGTGAATTTTCAAA--------------------------------ATCTTAAGGGAACCTAAGACTAGAGTAAATAATGTATTTTATACTTGTATTAGGAGTGTATAGGGAAGCACCA-TTTTGGCAGAAAATTCATAATAAAGTTGTAGAATGTG
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48923301 2640 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186    0 +    112108 I

a score=1440.000000
s hg38.chr14_KI270725v1_random    86875 2 +    172810 --GG
s panTro4.chrUn_GL393527         162671 2 +    341619 --GG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096447 2 +  72422247 --GG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33040 2 -     44534 --GG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61756552 2 -  96509753 --GG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23363152 2 - 128036923 --GG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918369 2 - 107702431 --GG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632409 2 - 108792865 --GG
i calJac3.chr14                C 0 C 0
s tarSyr2.KE938805v1               5716 2 +    186790 TT--
i tarSyr2.KE938805v1           N 0 I 1162
e gorGor3.chr9                 48923301 2640 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=482890.000000
s hg38.chr14_KI270725v1_random    86877 242 +    172810 GCTGTCAGAAATTTCAGTTAGCCTCAAAG------------------------------------------------------GAATTTGAAGAGTGTAAAAGTATTTAGTGCTATAATAACAATGTCTCTGTCAGTGTGAAATTTCTTCTTTTTTGAAATGAATATAAAAAGAATTTATCAGAAGAATCTTTAATAAATTCAATAGAATTTACTAACAAACTTAAGACATTGTTCCTAGGAGTAAAAGGAAAAACAATTCTCTGAAGATGCACAAAGATGATAACTGTGTCACGC
s panTro4.chrUn_GL393527         162673 238 +    341619 GCTGTGATAAATTTCAGTTAGTCTCAAAG------------------------------------------------------GAATTTGATGAGTGTAAAAG----TAGTGCTATAATAACAATGTCTCTGTCAGTGTGAAATTGCTTCTTTTTCGAAATGAATATAAAAAGAATTTATCAGCAGCATCTTTAATAAATTCAATAGAATTTACTAACAAACTTAAGACATTGTTCCTAGGAGTAAAAGGAAAAACAATTCTCTGAAGATGCACAAAGATGATAACTGTGTCACGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096449 242 +  72422247 GCTGTCAGAAATTTCAGTTAATCTCAAAG------------------------------------------------------GAATTTGATGAGTGTAAAAGTATTTAGTGCTATAATAACAATGTCTCTGTCAGTGTGAAATTGCTTCTTTTTTGAAATGAATATAAAAAGAATTTATCAGAAGCATCTTTAATAAATTCAATAGAATTTACTAACAAACTTAAGACATTGTTCCTAGGAGTAAAAGGAAAAACAATTCTCTGAAGATGCACAAAGATGATAACTGTGTCACGC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33042 242 -     44534 GCTGTCAGAACTTTCAGTTACTCTCAAAG------------------------------------------------------GAATGTGATGAGTGTGACAGTATTTAGTGCGATACTAACAATGTCTCTGTCAGTGTGACATTGCTTCTTTTTTGAAATGAATATAAAAAGAACTTATCAGAAGCATCTTCAATAAATTCAATAGAATTTACTAATAAACTTAAGACATTGTTCTTAGCAGTACAAGGGAAAAAAATTCGCTGAAGATGCACAAAGATGATAACTGTGTCATGC
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61756554 242 -  96509753 GCTGTCAGTACTTTCAGTTACTCTCGAAG------------------------------------------------------GAATATGATGAGTGTGAAAGTATTTAGTGTGATACTAACAATGTCTCTGTCAGTGTGACGTTGCTTCATTTTTGAAATGAACATAAAAAGAACTTTTCAGAAGCATCTTCAATAAATTCAATAGAATTTACTAATAAATTTAAGACATTGTTCTTAGCAGTACAAGGAAAAACAATTCACTAACGACGCACAAAGATGATAACTGTGTCACGC
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23363154 242 - 128036923 GCTGTCAGAACTTTCAGTTACTCTCAAAG------------------------------------------------------GAATGTGATGAGTGTGACAGTATTTAGTGCGATACTAACAATGTCTCTGTCAGTGTGACATTGcttcttttttgaaatgaatataaaaagaacttaTCAGAAGCATCTTCAATAAATTCAATAGAATTTACTAATAAATTTAAGACATTGTTCTTAGCAGTACAAGGAAAAACAATTCGCTGAAGATGCACAAAGATGATAACTGTGTCATGC
i papAnu2.chr13                C 0 I 52901
s chlSab2.chr14                90918371 242 - 107702431 GCTGTCAGAACTTTCAGTTACTCTCGAAG------------------------------------------------------GAATGTGATGAGTGTGAAAGTATTTAGTGCGATACTAACAATGTCTCTGTCAGTGTGACATTGCTTCTTTTTTGAAATGAATGTAAAAAGAACTTATCAGAAGCATCTTCAATAAATGCAATAGAATTTACTAATAAACTTAAGACATTGTTCTTAGCAGTTCAAGGAAAAACAATTCACTAACGACGCACAAAGATGATAAGTGTGTCACGC
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632411 290 - 108792865 GCTGTCATAAATTTCGGTTTCTCTCTAAGGAATTTGATGACTCTAAAAGTGTTTAGTGCTGTATAGCAATGTCTCTCTCAAATGAATTTGATGAGTGCAAAAGTATTTAGTGCTATACTAACAATG--TCTGTCAGTGTTAAAATATTTGTTTATT-AAATGAA---AATAAGACTTCATCCGAAGTATGTTTAATAAATTCAATAGAATTTGCTAATAAACTTTGGCCACTGTTCTTAGCATTATAAGAAAAACCAATTAGCAGAAGATGCACAAAGATGATACTTAAGCCACAC
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48923301 2640 + 121947112 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=254033.000000
s hg38.chr14_KI270725v1_random    87119 129 +    172810 ATAGATCTGCCATTATCCAGAGCTATGGGTCTCTTTAAGACCCAGGGGCTAAATGGGCTGCACCTTATTCTTGGTGTGATGATCCCCATAT----TCTATCCCCTTTCCTGCCTTT-GGTATAATTTCTTATGG
s panTro4.chrUn_GL393527         162911 133 +    341619 ATAGATCTGCCATTATCCAGAGCTATGGGTCTCCTTAAGACCCAGGGGCTAAATGGGCTGCACCTTATTCTTGGCGTGATGATCCCCATATTCTATCTATCCCCTTTCCTGCCTTT-GGTATAATTTCTTATGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096691 128 +  72422247 ATAGATCTGCCATTATCCAGAGCTATGGGTCTCTTTAAGACCCAGGGGCTAAATGGGCTGCACCTTATTCTTGGCGTGATGATCCCCGTAT----TCTAT-CCTTTTCCTGCCTTT-GGTATAATTTCTTATGG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33284 129 -     44534 GTAGATCTGCCGTTAGCCAGAGTGATGGGTCTCTTTAAAGCCCAGGAACAAAATGGGCTGCACCTTATTCTTGGCATGACGATCCCCATAT----TGCATTCCCTTTCCTGACTTT-GGTATAATTTCTTGTGG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61756796 128 -  96509753 ATAGATCTGCCGTTACCCAGAGTTATGGGTCTCTTTGAAG-CCAGGGACAAAATGGGCTGCACCTTATTCTTGGCGTGACGATCCCCATAT----TCTATCCCCTTTCCTGACTTT-GGTATAATTTCTTGTGG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23416297 129 - 128036923 ATAGATCTGCCGTTATCCACAGCTATGGGTCTCTTTAAGGCCCAGGGACTAAATGGGTCGCACCTTATTCTTGGCGTGATGATCCCCATAT----TGAATTCCCTTTCCTGACTTT-GGTATAATTTCTTATGG
i papAnu2.chr13                I 52901 T 52329
s chlSab2.chr14                90918613 128 - 107702431 ATAGATCTTCCATTAGCCAGAGTTATGGGTCTCTTTGAAG-CCAGGGACAAAATAGGCTGCACCTTATTCTTGGCGTGACGATCCCCATAT----TCTATCCCCTTTCCTGACTTT-GGTATAATTTCTTGTGG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632701 127 - 108792865 ATAATTCTGCTGTTATCCAGAGCTA-AGGTCTCTTTAAA--CCCAGGGCTAAACGGGTTGCATCTGATTCTTGGCATAAGGATCCTTATAT----TCTATCCTTTCTCCTGCATTTGGGTATGTTTTCTTATGG
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48923301 2640 + 121947112 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=106116.000000
s hg38.chr14_KI270725v1_random    87248 47 +    172810 TTCTCCAGCATGGAGAGCTGACTAGTAATACCAGGTCTCATTATTTC
s panTro4.chrUn_GL393527         163044 47 +    341619 TTTTCCAGCATGGAGAGCTGACTAGTAATAGCAGGTGGCATTATTTC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096819 47 +  72422247 TTCTCCAGCATGGAGAGCTGACTAGTAATACCAGGTCTCATTATTTC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33413 47 -     44534 TTCTCCAGCATGGAGAGCTGACTGGTGATACCAGGTCTGATTATTTC
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61756924 47 -  96509753 TTCTCCAGCATGGAGAGCTGACTAGTGATACCAGGTCTGATTATTTC
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364097 47 - 128036923 ttCTCCAGCATGGAGAGCTGACTGGTGATACCAGGTCTGATTATTTC
i papAnu2.chr13                T 52329 C 0
s chlSab2.chr14                90918741 47 - 107702431 TTCTCCAGCATGGAGAGCTGACTAGTAATACCAGGTCTGATTATTTC
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632828 46 - 108792865 -TCACCAGCATGGACGGCTGACTAGTAATGCCAAGTCTGATTATTTC
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48923301 2640 + 121947112 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=5576.000000
s hg38.chr14_KI270725v1_random    87295 2 +    172810 AA
s panTro4.chrUn_GL393527         163091 2 +    341619 AA
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 48925941 2 + 121947112 AG
i gorGor3.chr9                 I 2640 C 0
s ponAbe2.chrUn                 2096866 2 +  72422247 AA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33460 2 -     44534 AA
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61756971 2 -  96509753 AA
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364144 2 - 128036923 AA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918788 2 - 107702431 AA
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632874 2 - 108792865 AA
i calJac3.chr14                C 0 C 0
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=5951.000000
s hg38.chr14_KI270725v1_random    87297 2 +    172810 CT
s panTro4.chrUn_GL393527         163093 2 +    341619 CT
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 48925943 2 + 121947112 CT
i gorGor3.chr9                 C 0 I 18287
s ponAbe2.chrUn                 2096868 2 +  72422247 CT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33462 2 -     44534 CC
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61756973 2 -  96509753 CT
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364146 2 - 128036923 CC
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918790 2 - 107702431 CT
i chlSab2.chr14                C 0 C 0
s rhiRox1.KN299071v1             180138 2 -    199907 CT
i rhiRox1.KN299071v1           N 0 I 1978
s calJac3.chr14                90632876 2 - 108792865 TT
i calJac3.chr14                C 0 C 0
s saiBol1.JH378265              2372858 2 -   3814455 TT
i saiBol1.JH378265             N 0 C 0
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=6552.000000
s hg38.chr14_KI270725v1_random    87299 2 +    172810 AA
s panTro4.chrUn_GL393527         163095 2 +    341619 AA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096870 2 +  72422247 AA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33464 2 -     44534 AA
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61756975 2 -  96509753 AA
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364148 2 - 128036923 AA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918792 2 - 107702431 AA
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632878 2 - 108792865 AA
i calJac3.chr14                C 0 C 0
s saiBol1.JH378265              2372860 2 -   3814455 AA
i saiBol1.JH378265             C 0 I 1973
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=89295.000000
s hg38.chr14_KI270725v1_random    87301 38 +    172810 AATCTCTGTTTCACTCGCTGACTATAGGAGCCTGGATT
s panTro4.chrUn_GL393527         163097 38 +    341619 AATCTCTGTTTCACTCGCTGACTATAGGAGCCTGGATT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096872 38 +  72422247 AATCTCTGTTTCACTCGCTGACTATAGGAGCCTGGATT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33466 38 -     44534 AATCTCTGTTTCACTTGCTGACTATAGGAGCCTGGATT
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61756977 38 -  96509753 AATCTCTGTTTCACTCGCTGACTATAGGAGCCTGCATT
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364150 38 - 128036923 AATCTCTGTTTCACTTGCTGACTATAGGAGCCTGGATT
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918794 38 - 107702431 AATCTCTGTTTCACTCGCTGACTATAGGAGCCTGCATT
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632880 38 - 108792865 AATCTCTGTTCTGCTCACTAACTTTAGGAGGCTGGATT
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=11150.000000
s hg38.chr14_KI270725v1_random    87339 6 +    172810 AAAATC
s panTro4.chrUn_GL393527         163135 6 +    341619 AAAATC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096910 6 +  72422247 AAAATC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33504 6 -     44534 AGGATC
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61757015 6 -  96509753 AGGATC
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364188 6 - 128036923 AGGATC
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918832 6 - 107702431 AGGATC
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632918 6 - 108792865 AGGAAC
i calJac3.chr14                C 0 C 0
s otoGar3.GL873666              4835685 6 -   4928749 AGGAAA
i otoGar3.GL873666             N 0 I 9
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=25053.000000
s hg38.chr14_KI270725v1_random    87345 10 +    172810 AACTTGAAGC
s panTro4.chrUn_GL393527         163141 10 +    341619 AACTTGAAGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096916 10 +  72422247 AACTTGAAGC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33510 10 -     44534 AACTTGAAGC
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61757021 10 -  96509753 AACTTGAAGC
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364194 10 - 128036923 AACTTGAAGC
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918838 10 - 107702431 AACTTGAAGC
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632924 10 - 108792865 CACTTGAAGC
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e otoGar3.GL873666              4835691  9 -   4928749 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=1672.000000
s hg38.chr14_KI270725v1_random    87355 2 +    172810 CC-
s panTro4.chrUn_GL393527         163151 2 +    341619 CC-
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096926 2 +  72422247 CC-
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33520 2 -     44534 CC-
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61757031 2 -  96509753 CT-
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364204 2 - 128036923 CC-
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918848 2 - 107702431 CC-
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632934 2 - 108792865 CC-
i calJac3.chr14                C 0 C 0
s otoGar3.GL873666              4835700 2 -   4928749 -CA
i otoGar3.GL873666             I 9 N 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=1435378.000000
s hg38.chr14_KI270725v1_random    87357 648 +    172810 TCTATCAATCTAGGCTCAAATAGTCAATTGTTTCAAAGTAGGATGACAAAGGCCACATCCCCTGAGTAATGCTCTGAGCTGCGCTCCCCACCAGCCTGTTCTTGGGGTCTCAGGAGCATTTGCCCTAGAGTCTGGCTTTCTGGAGAGCAGGTGAGG----------GGGGAAAAGCCAGGTCAGTGAACCTCTCTCCTTAGCGAGGGCAGTTGCTGCCCAATGCATGTCCTTGCCATGCACC----------------------------------------AGGGCAACATCCTGACCCAGATGCCAGCCACCCTGTCTCACATCCATTTAGAGAGAATCTCCATCTTCTGCCAAGACACTGCCCATGTAGATGAAAA-AGTATTTTGCATCCAAACATATCTTAAGCACTGATTTGAACCTCAATACTTCACACAGATGTCTTTGTCCAGGGTGTGTCAGCCTGGCTCAACAGCAGGGGAAGTGGAGCCAATTACGTCAG-TGTCAGTGGACTGAG----AAACACTCCAGGGAGTAGTTCTCATGCACGACTACCAGTGGCCAGACCAAGGTAGTGCAGCCTGTGCACAAACCTCCTGCTGCTTTTCCAGAGGACTGGATTTCTGGGAAATGGCTACTGAACAGGCTGCCAGGATCCATATATCCAGATTCAGAGAGATACATCTCTGGATTCAAATGCGC
s panTro4.chrUn_GL393527         163153 648 +    341619 TCTATCAATCTAGGCTCAAATAGTCAATTGTTTCAAAGTAGGATGACAAAGGCCACATCCCCTGAGTAATGCTCTGAGCTGTGCTCCCCACCAGCCTGTTCTTGGAGTCTCAGGAGCATCTGCCCTAGAGTCTGGCTTTCTGGAGAGCAGGTGAGG----------GGGGAAAAGCCAGGTCAGTGAACCTCTCTCCTTAGCGAGGGCAGCTGCTGCCCAATGCATGTTCTTGCCATGCACC----------------------------------------AGGGCATCATCCTGACCCAGATGCCAGCCACCCTGTCTCACATCCATTTAGAGAGAATCTCCATCTTCTGCCAAGACACTGCCCATGTAGATGAAAA-AGTATTTTGCATCCAAACATATCTTAAGCACTGATTTGAACCTCAATACTTCACACAGATGCCTTTGTCCAGGGCGTGTCGGCCTGGCTCAACAGCAGGGGAAGTGGAGCCAATTACATCAG-TGTCAGTGGACTGAG----AAATACTCCAGGGAGTAGTTCTCATGCACGACAACCAGTGGCCAGACCAAGGTAGTGCAGCCTGTGCACAAACCTCCTGCTGCTTTTCCAGAGGACTGGATTTCTGGGAAATGGCTACTGAACAGGCTGCCAGGATCCATATATCCAGATTCAGAGAGATACATCTCTGGATTCAAATGCGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2096928 647 +  72422247 TCTATCGATCTAGGCTCAAATAGTCAATTGTTTCAAAGTAGGATGACAAAGGCCACATCCCCTGAGTAATGCTGTGAGCTGCGCTCCCCACCAGCCTGTTCCTGGGGTCTCAGGAGCATCTGCCCTAGAGCCTGGCTTTCTGGAGAGCAGATGA-G----------GGGGAAAAGCCAGGTCAGTGAACCTCTCTCCTTAGCGAGGGCGGCTGCTGCCCAATACATGTTCTTGCCGCGCACC----------------------------------------AGGGCATCATCCTGACCCAGATGCCAGCTACCCTGTCTCACATCCATTTAGAGAGAATCTCCATCTTCTGCCAAGACACTGCCCATGTAGATGAAAA-AGTATTTTGCATCCAAACATATCTTAAGCACTGATTTGAACCTCAACACTTCACACAGATGCCTTTGCCCAGGGCGTGTCGGCCTGGCTCAACAGCAGGGGAAGTGGAGCCAATTACATCAG-TGTCAGTGGACTGAG----AAATACTCCAGGGAGTAATTCTCATGCACAACTACCAGTGGCCAGACCAAGGTAGTGCAGCCTATGCACAAACCTCCTGCTGCTTTTCCAGAGCACTGGATTTCTGGGAAATGGCTACCGAACAGGCTGCCAGGATCCATATATCCAGATTCAGAGAGATACATCTCTGGATTCAAATGCAC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          33522 657 -     44534 TCTCTGGATCTTGGCTCAGAAAATCAATTGTTTCAAAGTAGGATGACAAAGGCTACATCCCCTGAGTAATACTCTGAGCTG-ACTCCCCACCAGCCTGTTCCTGGGGTCTCAGGAGCATCTGCCCAAGAACCTGGCTTTCTGGAGAGCAGGTGAGGGGGAGGCCCTGGGGAAAAGCCAGGTCAGTGAACCTCTCTCCTTAGTGAGGGTGGCTGCTGCCCAATGCATGTTCTTGCCATGCACC----------------------------------------AGGGCATCATCCTGACCCAGATGCCAGCCTCCCTGTCTCACATCCATTTAGAGAGAATCTCCATCTTCTGCCAAGACACTGCCCATGTAGACGAAAA-AGTATTTTGCACCCAAATATATCTTAAGCACTGATTTGAACCTCAATACCTCACACTGCTGCTTTTCCCCAGGACAAGTCATCCTCACTGAACAGCAGGGGAAGTGGAGTCGATTACATGAG-TATCAGTGGACTGAG----AAATACTCCAGGGAGAAGTTCTCATGCACGACTACCAGTGGCCAGACCAAGGTAGTGCAGCCTGTGCACAAACCTCCTGCTGCTTTTCCAGAGGACTGGATTTCTGGGAAATGGCTACCAAACAGGCTACCAGGATCCAGATATCCAGATTCAGAGAGCTACATCTCTGGATTCAAATGCAC
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61757033 658 -  96509753 TCTCTGAATCTTGGCTCAAATAATCAATTGTTTCAAAGTAGGATGACAAAGGCCACATCCCCTGAGTAATGCTCTGAGCTGCGCTCCCCACCAGCCTGTTCCTGGGGTCTCAGGAGCATCTGCCCAAGAACCTGGCTTTCTGGAGAGCAGGTGAGGGGGAGGCCCTGGGGAAAGGCCAGGTCAGTGAACCTCTCTCCTTAGTGAGGGTGGCTGCTGCCCAACGCATGTTCTTGCCATGCACC----------------------------------------AGGGCATCATCCTGACCCAGATGCCAGCCTCTCTGTCTCACATCCATTTAGAGAGAATCTCCATCTTCTGCCAAGACACTGCCCATGTAGACGAAAA-AGTATTTTGCACCCAAATATATCTTAAGCACTGATTTGAACCTCAATACCTCACACTGCTGCTTTTCCCCAGGACAAGTCATCCTCACTGAACAGCAGGGGAAGTGGAGTCAATTACATGAG-TATCAGTGGACTGAG----AAATACTCCAGGGAGAAGTTCTCATGCATAACTACCAGTGGCCAGACCAAGGTAGTGCAGCCTGTGCACAAACCTCCTGCTGCTTTTCCAGAGGACTGGATTTCTGGGAAATGGCTACCAAACAGGCTACCAGGATCCAGATATCCAGATTCAGAGAGATACATCTCTGGATTCAAATGCAC
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364206 657 - 128036923 TCTCTGGATCTTGGCTCAGAAAATCAATTGTTTCAAAGTAGGATGACAAAGGCTACATGCACTGAGTAATACTCTGAGCTG-ACTCCCCACCAGCCTGTTCCTGGGGTCTCAGGAGCATCTGCCCAAGAACCTGGCTTTCTGGAGAGCAGGTGAGGGGGAGGCCCTGGGGAAAAGCCAGGTCAGTGAATCTCTCTCCTTAGTGAGGGTGGCTGCTGCCCAATGCATGTTCTTGCCGTGCACC----------------------------------------AGGGCATCATCCTGACCCAGATGCCAGCCTCCCTGTCTCACATCCATTTAGAGAGAGTCTCCATCTTCTGCCAAGACACTGCCCATGTAGACGAAAA-AGTATTTTGCACCCAAATATATCTTAAGCACTGATTTGAACCTCAATACCTCACACTGCTGCTTTTCCCCAGGACAAGTCATCCTCACTGAACAGCAGGGGAAGTGGAGTCAATTACATGAG-TATCAGTAGACTGAG----AAATACTCCAGGGAGAAGTTCTCATGCACGACTACCAGTGGCCAGACCAAGGTAGTGCAGCCTGTGCACAAACCTCCTGCTGCTTTTCCAGAGGACTGGATTTCTGGGAAATGGCTACCAAACAGGCTACCAGGATCCAGATATCCAGATTCAGAGAGATACATCTCTGGATTCAAAtgcac
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90918850 658 - 107702431 TCTCTGAATCTTGGGTCAAATAATCAATTGTTTCCAAGTAGGATGACAAAGGGCACATCCCCTGAGTAATGCTCTGAGCTGTGCTCCCCATCAGCCTGTTCCTGGGGTCTCAGGAGCATCTGCCCAAGAACCTGGCTTTCTGGAGAGCAGGTGAGGGGGAGGGCCTGGGGAAAGGGCAGGTCAGTGAACCTCTCTCCTTAGTGAGGGTGGCTGCTGCCCAACGCATGTTCTTGCCGCGCACC----------------------------------------AGGGCATCATCCTGACCCAGATGCCAGCCTCCCTGTCTCACATCCATTTAGAGAGAATCTCCATCTTCGGCCAAGACACTGCCCATGTAGACGAAAA-AGTATTTTGCATCCAAATATATGTTCAGCTCTGATTTGAACCTCAATACCTCACACTGCTGCCTTTCCCCAGGACAAGTCATCCTCACTCGACAGCAGGGGAAGTGGATGCAAGTACATCAG-TATCAGTTCACTGAG----AAATACTCGAGGGAGAAGTTCTCATGCACGACTACCAGTGGCCAGACCAAGGTAGTGCAGTCTGTGGACAAACCTCCGGCTGCTTTTCCAGGGGACTGGATTTCTGTGAAATGGCTACCAAACAGGTTTCCAGGATCCAGATATCCAGATTCAGAGAGATACATCTCTGGATTCAAATGCAC
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90632936 695 - 108792865 TCAATCAATCTAGGCTCAAATAATCAATTGTTTCAAAGCAGGATGAGAAAGACCACATTTTCTGGGTAATGCTCTGAGCTCCACTCCCCACCATTCTGTTTCTGGGGTCTCAGGTGCATCAGCCCTATAGCCTGGCTTTCTGGAGAGCAGGTGAAGGGGAGGCCATGGGGAAAG---------GTAACCCTCTCTCCTTAGCAAGGGCAGCTACTGCTCAGTGCATGTTCTTACCATGCACCATCAATAATCCTTTCCTCTTTTACTCTTCAGCAGTGAGTGAGAACATCATCCTGACCCAGATGCTAGCCTCCCTGTCTCACATCCATTTAGAGAGAGTCTCCATCTCCGGTCATGCTGCTGCCCACATAGATGAAAAGAATATTTTGAATCCAGATAAACCTTAAGCACTGATGTGAACCTCAATACCTCACACAGCTGCCCTTGCCCAGGGCTTGTTGGCCTGCTTCAGCAGCAGGGGCAGTGCAGCCAACTGCATCAGTTATCAGTGGACTGAAGCCCAGGGACTTCAGGGAGTATTTCTCATGCACAACTAGGAGTAGCTAGACCAAGATAGTGCCATCTGTGCACAAACCTCCTGCTACTTCTCCAAGGGACTGAATTTTAGGGAAATGGCTACCAAACAGCCTGCCAAGATCCAGATGTCCAGATTCAGAGAGATACATCTCTGGATTCAAATGCAC
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               5718 1162 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=4874.000000
s hg38.chr14_KI270725v1_random    88005 4 +    172810 TTCT--
s panTro4.chrUn_GL393527         163801 4 +    341619 TTTT--
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2097575 4 +  72422247 TTTT--
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          34179 4 -     44534 TTTT--
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61757691 4 -  96509753 TTCT--
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364863 4 - 128036923 ttct--
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90919508 4 - 107702431 TTCT--
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90633631 4 - 108792865 TTTT--
i calJac3.chr14                C 0 C 0
s tarSyr2.KE938805v1               6880 5 +    186790 -tgtgt
i tarSyr2.KE938805v1           I 1162 I 1795
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=194082.000000
s hg38.chr14_KI270725v1_random    88009 88 +    172810 -TCTTTGTGCATAATTTTTGCAGTCATTGTTACTACGCCTTGGGGATTCTAGTCATTATACTTCAGCCGACTCTCTATGGCCCTTTCTC
s panTro4.chrUn_GL393527         163805 88 +    341619 -TCTTTGTGTACAATTTTAGCAGTCATTGTTACTACGCCTTGGGGATTCTAGTCATTATACTTCAGCTGACTCTCTATGGCCCTTTCTC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2097579 88 +  72422247 -TCTTTGTGCATAATTTTAGCAGTCATTGTTACTACGCCTTGGGGATTCTAGTCATTATACTTCAGCTGACTCTCTATGGCCCTTTCTC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          34183 89 -     44534 GTCTTTCTGCATAATTTTAGCAGTCATTGTTACTACGCCTTGGGGGTTCATGTCATTACACTGCAGCTGACTCTCTATGGCCCTTTCTC
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61757695 89 -  96509753 TTCTTTCTGCATAATTTTAGCAGTCATTGTTACTATGCCTTGGGGGTTCATGTCATTACACTGCAGCTGACTCTCTATGGCCCTTTCTC
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23364867 89 - 128036923 ttctttctgcataATTTTAGCAGTCATTGTTACTACGCCTTGGGGGTTCatgtcattacactccagctgaCTCTCTATGGCCCTTTCTC
i papAnu2.chr13                C 0 I 52330
s chlSab2.chr14                90919512 89 - 107702431 TTCTTTCTGCATAATTTTAGCAGTCATTGTTACTACGCCTTGGGGATTCATGTCATTACACTCCGGCTGACTCTCTATGGCCCTTTCTC
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90633635 89 - 108792865 TTCTTTCTGTGTAATTTTAGCAGTCATTGTTACTACACCTTGGTGTTTCCATTCAATGTACTTCAGCTGACTGTCTGTGGCCCTGTTTG
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               6885 1795 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=335193.000000
s hg38.chr14_KI270725v1_random    88097 154 +    172810 CCCTTCACTGCTCTATCTGAACCTGGGGAA-GCAGCTCAGGCTGCAAATGAGGCAGACCTCATGGCCTggaattagcaacccctaggacggctgtcaatcagtgatgacaagggaggtgtatacatcccccagctccctcacctctcaggtggaa
s panTro4.chrUn_GL393527         163893 154 +    341619 CCCTTCACTGCTCTATCTGAACCTGGGGAA-GCAGCTCAGGCTGCAAATGAGGCAGACCTCATGGCCTggaattagcatcccctaggacggctgtcaatcagtgattacaagggaggtgtacacatcccccagctccctcacctctcaggtggaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2097667 154 +  72422247 CCCTTCACTGCTCCATCTGAACCTGGGGAA-GCAGCTCAGGCTGCAAATGAGGCAGACCTCATGGCCTggaattagcatcccctaggatggctgtcaatcagtgatgacaagggaggtgtacacatcccccagctccctcacctctcaggtggaa
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          34272 155 -     44534 CTCATCACTGCTCTATCTGAACCTGGGGAAGGCAGCTCAGGCTGCAAATGAGGCAAACATCATGGCCTggaattagcatcctctaggatggctatcaatctctgatgacaaaggaggtgtacacataccccagctccctcacctctcaggtggaa
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61757784 155 -  96509753 CTCATCACTGCTCTATCTGAACCTGGGGAAGGCAGCTCAGGCTGCAAATGAGGCAAACATCATGGCCTggaattagcatcctctaggatggctatcaatctctgatgacaaaggaggtgtacacataccccagctccctcacctctcaggtggaa
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23417286 155 - 128036923 CCCTTCACTGCTCTATCTGAACCTGGGGAAGGCAGCTCAGGCTGCAAATGAGGCAGACCTCACGGCCTGGAATTAATATCCCCTAGGATGGCTATCTATCAGTGATGACAAGGGAGGTGTACACATATCCCAGCTCCCTCACCTCTCAGGTGGAA
i papAnu2.chr13                I 52330 T 52435
s chlSab2.chr14                90919601 155 - 107702431 CTCATCATGGCTCTATCTGAACCTGGGGAAGGCAGCTCAGGCTGCAAATGAGGCAAACATCATGGCCTggaattagcatcctctaggatggctatcaatctctgatgacataggagctgtacacataccccagctccctcacctctcaggtggaa
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90633724 153 - 108792865 -TCCTTACTGCTCTCACTGAACCTGGggag-gcagctctgcctgcaaatgtggcagaccttatttcctaaaattaacatcctctaggaccgctatcaatcagtaattgcatgggaggtgtagatataccccagctccctcacttctcaaatagaa
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               6885 1795 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=510508.000000
s hg38.chr14_KI270725v1_random    88251 234 +    172810 taacagaggcatttttcctg-tgtttctatgtaggcttgagctctcgtcatcctcagaggtggctcctt-ctgagacacctttcactttccctttccctcctcccctcccttgctcacttgcttgtttcccgcactttgtaaatatactgcctgcatgcgaatctttgGCATCCTTCTCACTGAGGGGACCCAACCTAATGCATTGGAAAAATTCTCATTCTTGGAGGGCATCA--TT
s panTro4.chrUn_GL393527         164047 234 +    341619 taacagaggcatttttcctg-tgtttctatgtgggcttgagctctcgtcatcctcagaggtggctcctt-ctgaggcagctctcactttcactttccctcctcccctcccttgctcacttgcttgtttcccgcactttgtaaatatactgtctgcatgcgaatctttgtcATCCTTCTCACTGAGGGGACCCAACCTAATGCATTGGAAAAATCCTCATTCTTGGAGGGCATCG--TT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2097821 234 +  72422247 taacagaggcatttttcctg-tgtttctatgtgggcttgagctctcgtcatcctcagaggtggctcctt-ctgaggcacctttcactttccctttccctcctcccctcccttgctcacttgcttgtttcccgcactttgtaaatatactgcctgcatgcgaatctttgGCATCCTTCTCACTGAGGGGACCCAACCTAATGCATTGGAAAAATCCTCATTCTTGGAGGGCATCG--TT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          34427 233 -     44534 taacagaggcctttttccag-agtttccatgagggcttgagctctcgtcatcctcagaggtggctctttgctgaggtacctttcacttcccctttccctcctctcttcccttgctcacttgcttatttcctgcacattgaaaatatactggctgcatgggaatctttggcatccttctcactgaggggacccaacctaaTGCATTGGAAAAATCCTCATTCTTGGAGGGCATCA----
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61757939 233 -  96509753 taacagaggcctttttccag-agtttccatgagggcttgagctctcgtcatcctcagaggtggctctttgctgaggtacctttcacttcccctttccctcctctcttcccttgctcacttgcttatttcctgcacattgaaaatatactggctgcatgggaatctttggcatccttctcactgaggggacccaacctaaTGCATTGGAAAAATCCTCATTCTTGGAGGGCATCA----
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23365006 236 - 128036923 tAACAGAGGCCTTTTTCCGGTAGTTTCCATGAGGGCTTGAGCTCTCGTCATCCTCAGAGGTGGCTCTTTGCTGAGGTACCTTtcactttccctttccctcctctcttcccttgcTCACTTGCTTATTTCCTGTACATTGAAAATACACTGGCTGCATGGGAATCTTTGGCATCCTTCTCACTGAGGGGAGCCAACCTAATGCATTGGAAAAATCCTCATTCTTGGAGGGCATCATT--
i papAnu2.chr13                T 52435 I 52431
s chlSab2.chr14                90919756 233 - 107702431 taacagaggcctttttccgg-agtttccatgagggcttgagctctcgtcatcctcagtggtggctctttgctgaggtacctttcactttccctttccctcctctcttcccttgctcacttgcttatttcctgcacattgaaaatatactggctgcatgggaatctttggcatccttctcactgaggggacccaacctaaTGCATTGGAAAAATCCTCATTCTTGGAGGGCATCA----
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90633877 229 - 108792865 aaacAGAGGCAGTTTTCATG-TGTCTCTGTGTGGGCTTGGGCTCTTGTTATCCTCAGAGGTGGCTCCTTGCTGAGGGAtgtttca------ctgtccctcctcccctcccttgctcacttgcttatttcctgcactctgtaaatacactgcctgcatggaaatctttgtcatccttctcactggggggacccaacctaaaacaCTGAAAAAATCCTCATTCTTGGAAGACATCT--TT
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               6885 1795 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=12662.000000
s hg38.chr14_KI270725v1_random    88485 28 +    172810 GGTTTGAATTATTGCCACTTCTCCTGTT
s panTro4.chrUn_GL393527         164281 28 +    341619 GGTTTGAATTATTGCCACTTCTCATGTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2098055 28 +  72422247 GGTTTGAATTATTGCCACTTCTCATGTT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          34660  2 -     44534 --------------------------TT
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61758172  2 -  96509753 --------------------------TT
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23417673 28 - 128036923 GGTTTGAATTATTGTCAATTCTCATGTT
i papAnu2.chr13                I 52431 T 52459
s chlSab2.chr14                90919989  2 - 107702431 --------------------------TT
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90634106 27 - 108792865 -GCTTGAATTACTGCCACCTCTCATGTT
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               6885 1795 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=26425.000000
s hg38.chr14_KI270725v1_random    88513 13 +    172810 TTAATGCCTAGGG
s panTro4.chrUn_GL393527         164309 13 +    341619 TTAATGCCTAGCG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2098083 13 +  72422247 TTAATGCATAGGG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          34662 13 -     44534 TTAATGCATAGGG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61758174 13 -  96509753 TTAATGCATAGGG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23365242 13 - 128036923 TTAATGCATAGGG
i papAnu2.chr13                T 52459 C 0
s chlSab2.chr14                90919991 13 - 107702431 TTAAGGCATAAGG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90634133 13 - 108792865 TTAATGCATAAGA
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48925945 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               6885 1795 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=670631.000000
s hg38.chr14_KI270725v1_random    88526 226 +    172810 AAATTCCAAAAATTTAGGAAATCTTTAAATTCCCTTTGCCAATCTTTCTTAGATTTGATTTTAGCAGAGATTCATTTTCTCTAGGTCACAAAATCACAGAAGCCTTCCACAAATGGCTACACAACATAGAGTCCACATAGAGCAGAGACTCAGAAT-CTCCCAGGATTTGACATCCACACATCAGACAGTCCTAGAGTCTCAGG-TTTTTTCTAGGTCGATCGCCTCA
s panTro4.chrUn_GL393527         164322 226 +    341619 AAATTCCAAAAATTTAGGAAATCTTTAAATTCCCTTTGCCAGTCTTTCCTAGATTTGATTTTAGCAGAGATTCATTTTCTCTAGGTCACAAAATCACAGCAGCCTTCCACAAATGGCTACACAACATAGAGTCCACATAGAGCAGAGACTCAGAAT-CTCCCAGGATTTGACATCCACACATCAGACAGTCCTAGAGTCTCAGG-TTTTTTCTAGGTCGATCGCCTCA
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 48944232 226 + 121947112 AAATTCCAAAAATTTAGGAAATCTTTAAATTCCCTTTGCCAATCTTTCTTAGATTTGATTTTAGCAGAGATTCATTTTCTCTAGGTCACAAAATCACAGAAGCCTTCCACAAATGGCTACACAACATAGAGTCCACATATAACAGAGACTCAGAAT-CTCCCAGGATTTGACATCCACACATCAGACAGTCCTAGAGTCTCAGG-TTTTTTCTAGGTCGATCGCCTCA
i gorGor3.chr9                 I 18287 n 18287
s ponAbe2.chrUn                 2098096 226 +  72422247 AAATTCCAAAAATTTAGGAAATCTTTAAATTCCCTTTGCCAATCTTTCTTAGATTTGATTTTAGCAGAGATTCATTTTTTCTAGATCACAAAATCACAGAAGCCTTCCACAGATGGCTACACAACATAAAGTCCACATAGAGCAGAGACTCAGAAT-CTCCCAGAATTTGACATCCACACATCAGAGAGTCCTAGAGTCTCAGA-TTTTTTCTAGGTCGATTGCCTCA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          34675 226 -     44534 AAATTCCTAAAATTTAAGAAATCTTTAAATTCCCTTTGCCAAACTTTCTTAGATTTGATTTTAGCAGAGATTCATTTTTTCTAGGTCACAAAATCAAAGAAGCCTTCCACAAATGGCTACACACCATGGAGTCCACATAGAGCAGAGAGTCCAAAT-CCCCCAGAATTTGACATCCCCACATCAGAGAGTCCTGGAGTCTCAGG-TTTTTTCTAGGTCTATTGCCTCA
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61758187 226 -  96509753 AAATTCCTAAAATTTAAGAAATCTTTAAATTCCCTTTGCCAAACTTTCTTAGATTTGATTTTAGCAGAGATTCATTTTTTCTAGGTCACAAAATCAAAGAAGCCTTCCACAAATGGCTACACACCATGGAGTCCACATAGAGCAGAGAGTCCAAAT-CCCCCAGAATTTGACATCCCCACATCAGAGAGTCCTGGAGTCTCAGG-TTTTTTCTAGGTCTATTGCCTCA
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23365255 226 - 128036923 AAATTcctaaaatttaagaaatctttaaatTCCCTTTGCCAATCTTTCTTAGATTTGATTTTAGCAGAGATTCATTTTTTCTAGGTCACAAAATCAAAGAAGCCTTCCACAAATGGCTACACACCATGGAGTCCACATAGAGCAGAGAGTCTGAAT-CCCCCAGAATTTGACATCCACACATCAGAGAGTCCTAGAGTCTCAGG-TTTTTTCTAGGTCTATTGCCTCA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90920004 224 - 107702431 AAATTCCTAAAATTCAAGAAATCTTTAAATCTCCTTTGCCAATCTTTCTTAGATTTGATTTTAGCAGAGATTCATTTTTTCTAGGTCACAAAATCAAAGAAGCCTTCCACAAATGGCTACACACCA--GAGTCCACATAGAGCAGAGAGTTCGAAT-CCCCCAGAATTTGACATCCACACATCAGAGAGTCCTAGAGTCTCAGG-TTTTTTCTAGGTCTATTGCCTCA
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90634146 228 - 108792865 AAATTCAGAAAATTTAAGAAATATTTAAATTCCCTTTGCTAGTCTTCCTTAGATTTGTTTTTAGCAGAGATTCATTTTTTCTAGGTCACAAAATCAAAGAAGCCTTCCACAAATGGCTGCACACCATGGAGTTCACTCAGAGCAGAGAATCAGAATCCCCCCAGAATCTGAGATCCACACATTAGAGAGTCCTGGAGTCTCAGGTTTTTTTCTAGGTCTATTGCCTCA
i calJac3.chr14                C 0 C 0
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               6885 1795 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=1064174.000000
s hg38.chr14_KI270725v1_random    88752 481 +    172810 TAAATCTGCCTTGTGATATTTTTATTCTACCTTAGGGGAAGACCATTGTGTGGATGATGAGAGTTGTTTGTGGAATAaataatacaccc--actaaagacatcattgtcctaatatctggaatctatgatcattacttatgaatatgtc-aaaaataacttggcagacatg-----gttgagaatttgggggtcaggagagtatcctgaattatctgggtgagaccatcataatcacaagggtccttacaatagggagggaggaaggtaacagccagagaggacctgggacaacggacagggaaactggagtgatggaggtaggggccatgctgctaggaatgtgggaacatcagaaagatggaatgctcgatattggattctctctcttgaag--cctagactgaatagagccctattactccttgattttacttcattgagacttctgacctccagaaatgtaaggtaatacagttgtattatgtgtag
s panTro4.chrUn_GL393527         164548 481 +    341619 TAAATGTGCCTTGTGATATTTTTATTCTACCTTAGGGGAAGACCATTGTGTGGATGATGAGAGTTGTTTGTGGAATgaataatacaccc--actaaagacataattgtcctaatatctggaatctatgatcattacttatgaatatgtc-aaaaataacttggcagacatg-----gttgagaattttggggtcaggagagtatcctgaattatctgggtgagaccatcataatcgcaagggtccttacaatagggaaggaggaaggtaacagccagagaggacctgggacaacggacagggaaactggagtgatggaggaaggggccatgctgctaggaatgtgggaacatcagaaagatggaatgctcgatattggattctctctcttgaag--cccagactgaatatagccctattactccttgattttacttcattgagacttctgacctccagaaatgtaagataatacacttgtgttatgtggag
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2098322 481 +  72422247 TAAATCTGCCTTGTGATATTTTTATTCTACCTTAGGGGAAGACCATTGTGCGGATGATGAGAGTTGTTTGTGGAATgaataatacaccc--cctaaagacatcattgtcctaatatctggaatctatgatcattacttacgaatatgtc-aaaaataacttggcagacatg-----gttgagaattttgaggtcaggagagtatcctgaattatctgggtgagaccagcataatcacaagggtccttataatacggagggaggaaggtaacagccagagaggacctgggacaacagacagggaaactggagtgatggaggaaggggccatgctgctaggaatgtgggaacatcagaaagatggaatgctcgatattggattctctctcttgaag--cctagaatgaatagagccctattactccttgattttacttcattgagacttctgacctccagaaatgtaagataatacacttgtgttatgtggag
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          34901 491 -     44534 TAAATCTGCCTTGTGATATTTTTATTCTACTTTAGGGGAAGACCATCGTGGGGATGATGAAAGTTGTTTGGGGAATgaataatacgcccctcctaaagacatcattgtcctaatatctggaatctatgattattacttattaatatgtcaaaaaataacttggcagacatggttaagttgagaattttgaagtcaggagagtatcctgaattatctgggtgagaccagcataatcacaagggtccttataatagggagggaggagggtaacagccagaagggacctcagacaacggagagtgaaactggagtgatggaggaaacggccttggggccaggaacctgggaacatcaaaaagatgggacactcgatattggattctctctcttgacgactccagaattaatagagccctattactccttgattttatttcattgagacttctgacctctagaaatgtaagataatacacttgtgttatgtggag
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61758413 491 -  96509753 TAAATCTGCCTTGTGATATTTTTATTCTACTTTAGGGGAAGACCATCGTGGGGATGATGAAAGTTGTTTGGGGAATgaataatacgcccctcctaaagacatcattgtcctaatatctggaatctatgattattacttattaatatgtcaaaaaataacttggcagacatggttaagttgagaattttgaagtcaggagagtatcctgaattatctgggtgagaccagcataatcacaagggtccttataatagggagggaggagggtaacagccagaagggacctcggacaacggagagtgaaactggagtgatggaggaaacggccttggtgccaggaacctgggaacatcaaaaagatgggacactcgatattggattctctctcttgaagactccagaattaatagagccctattactccttgattttatttcattgagacttctgacctctagaaatgtaagataatacacttgtgttatgtggag
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23365481 490 - 128036923 TAAATctgccttgtgatatttttattctactttaggGGAAGACCATCGTGGGGATGATGAAAGTTGTTTGGGGAATGAATCATATGCCCCTCCTAAAGACATCATTGTcctaatatctggaatctatgATTATTACTTATTAATATGTC-AAAAATAACTTGGCAGACATGGTTAAGTTGAGAATTTTGAAGTCAGGAGAGtatcctgaattatctgggtGAGACCAGcataatcacaagggtccttataataGGGAGGGAGGAGCGTAACAGCCAGAGGGGACATCGGACAACGGAGAGTGAAACTGGAGTGATGGAGGAAACGGCCTTGGTGCCAGGAACCTGGGAACATCAAAAAGATGGGACACTCGATATTGGATTCTCTCTCTTGAAGACTCCAGAATTAATAGAGCCCTATTACTCCTtgattttatttcactgagacttctgacctctagaaatGTAAGATAATACACTTGTGTTATGTGGAG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90920228 490 - 107702431 TAAATCTGCCTTGTGATATTTTTATTCTACTTTAGGGGAAGACCATTGTGGGGATGATGAAAGTTGTTTGGGGAATgaataatacacccctcctcaagacatcattgtcctaatatctggaatatatgattattacttattaatatgtc-aaaaataacttggcagatatggttaagttgagaattttgaggtcaggagagtttcctgaattatctgggtgagaccagcataatcacaagggtccttataatagggagggaggagggtaacagccagaggggacctcggacaacggagagtgaaactggagtgatggaggaaatggccttggtgccaggaacatgggaacatcaaaaagatgggacactcgatattggattctctctcttgaagactctagaatgaatagagccctattactccttgattttacttcactgagacttctgacctccagaaatataagataatacacttgtgttatgtggag
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90634374 484 - 108792865 TAAATCTGCCTTATGACATTTTTATTCTACCTTAGGGCAAGACCATTGTAGGGATGATGAAAATAGTTTGTGGAATgaataacgcacttc-cctaaagacatcattgttctaatatctggaatctatgattattacttatgaatatgtc-aaaaataactgggcagacata-----gataagaatttggaggtcaggaaagacttctgaattatctgggtaagaccagcataatcacaaagttacttctaatagagagggagtagcatcactgccagaatggatctgggacaatggagagggatgctggaatgaggaaggaagggtccatggagccaggaatatgggaacatctgaaagatggaaagctggagattggattgtctctcctgaagcctccagactgaatacagccatattacttcttgattttacttcattgagacttctgaccttcagaaaggtgatataatacacttgtgttacgtggag
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48944458 18287 + 121947112 I
e rhiRox1.KN299071v1             180140 1978 -    199907 I
e saiBol1.JH378265              2372862 1973 -   3814455 I
e tarSyr2.KE938805v1               6885 1795 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=6600.000000
s hg38.chr14_KI270725v1_random    89233 1 +    172810 c
s panTro4.chrUn_GL393527         165029 1 +    341619 c
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2098803 1 +  72422247 c
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          35392 1 -     44534 c
i rheMac3.chrUn_JH290316       C 0 I 1
s macFas5.chr10                61758904 1 -  96509753 c
i macFas5.chr10                C 0 I 1
s papAnu2.chr13                23365971 1 - 128036923 C
i papAnu2.chr13                C 0 I 1
s chlSab2.chr14                90920718 1 - 107702431 c
i chlSab2.chr14                C 0 I 1
s nasLar1.chr13                22560567 1 - 126811233 c
i nasLar1.chr13                N 0 N 0
s rhiRox1.KN299071v1             182118 1 -    199907 c
i rhiRox1.KN299071v1           I 1978 N 0
s calJac3.chr14                90634858 1 - 108792865 c
i calJac3.chr14                C 0 C 0
s saiBol1.JH378265              2374835 1 -   3814455 c
i saiBol1.JH378265             I 1973 N 0
s tarSyr2.KE938805v1               8680 1 +    186790 c
i tarSyr2.KE938805v1           I 1795 I 5628
e gorGor3.chr9                 48944458 18287 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=371040.000000
s hg38.chr14_KI270725v1_random    89234 174 +    172810 -tgtaaggttgtggtaatttgttacagcagcaacaggaaaccaatgcaA-GGGGAAGGGGTGTGTTTTACTTCCCT-AGTGTATCACTGTCCTCTGTTCTCCCAAATAGTTCTGTGTTTTTGT-GTTTGCTGTCAATTTCAAGAAGAGACAGAAAACA-TTTTTCTATGAGGAGAGCTA
s panTro4.chrUn_GL393527         165030 174 +    341619 -agtaaggttgtggtaatttgttacagcagcaacaggaaaccagtgcaA-GGGGAAGGGGTGTGTTTTACTTCCCT-AGTGTATCACTGTCCTCTGTTCTCTCAAATAGTTCCTTGTTTTTGT-GTTTGCTGTCAATTTCAACAAGAGACAGAAAACA-TTTTTCTATGAGGAGAGCTA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2098804 174 +  72422247 -agtaaggttgtagtaatttgttacagcagcaacaggaaaccaatgcaA-GGGGAAGGGGTGTGTTTTACTTCCCT-AGTGTATCACTGTCCTCTGTTCTCCCAAATAGTTCTATGTTGTTGT-GTTTGCTGTCAATTTCAACAAGAGACAGAAAACA-TTTTTCTATGAGGAGAGCTA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          35394 174 -     44534 -agtaaggctgtggtaattagttacagcagcaacaggaaaccaatgcaA-GGGGAAAGGGTGTGTTTTACTTCCCT-AGTGTATCACTGTCCTA-GTTCTCCCAAATAGTTATATGTTGTTGTCTTTTGCTGTCAATTTCAACAAGAGACAGAAACCATTTTTTCTATGAGGAGAGCT-
i rheMac3.chrUn_JH290316       I 1 C 0
s macFas5.chr10                61758906 175 -  96509753 -agtaaggctgtggtaattagttacagcagcaacaggaaaccaatgcaAGGGGGAAAGGGTGTGTTTTACTTCCCT-AGTGTATCACTGTCCTA-GTTCTCCCAAATAGTTATATGTTGTTGTCTTTTGCTGTCAATTTCAACAAGAGACAGAAACCATTTTTTCTATGAGGAGAGCT-
i macFas5.chr10                I 1 C 0
s papAnu2.chr13                23365973 174 - 128036923 -AGTAAGGCGGTGGTAATTagttacagcagcaacaggaaaccaaTGCAA-GGGGAAAGGGTGTGTTTTACTTCCCT-AGTGTATCACTGTCCTA-GTTCTCCCAAATAGTTATATGTTGTTGTCTTTTGCTGTCAATTTCAACAAGAGACAGAAACCATTTTTTCTATGAGGAGAGCT-
i papAnu2.chr13                I 1 C 0
s chlSab2.chr14                90920720 175 - 107702431 -agtaaggctgtggtaatttgttacagcagcaacaggaaaccaatgcaA-GGGGAAGGGGTGTGTTTTACTTCCCC-AGTGTATCACTGTCCTCTGTTCTCCCAAATAGTTATATGTTGTTGTCTTTTGCTGTCAATTTCAACGAGAGATAGAAACCACTTTTTCTATGAGGAGAGCT-
i chlSab2.chr14                I 1 C 0
s calJac3.chr14                90634859 177 - 108792865 cagtaaggttgtggtaatttgttacagcagcaacaggaaaccaatgcaA-GGGGAGGTGGTGTCTGTTACTTCCCTGAGTATATCATTGTCCTCTATTCTCCCAAACAGTTCTATGTTGTCATCTTTTGCTGTCAATTTTGACAAGAGTCAGAGAACA-TGTTTCTATGAGGAAAGGTA
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 48944458 18287 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=2552.000000
s hg38.chr14_KI270725v1_random    89408 1 +    172810 A
s panTro4.chrUn_GL393527         165204 1 +    341619 G
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 49357042 1 + 121947112 G
i gorGor3.chr9                 n 18287 I 175
s ponAbe2.chrUn                 2098978 1 +  72422247 G
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          35568 1 -     44534 G
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61759081 1 -  96509753 G
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23366147 1 - 128036923 G
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90920895 1 - 107702431 G
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90635036 1 - 108792865 G
i calJac3.chr14                C 0 C 0
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=378539.000000
s hg38.chr14_KI270725v1_random    89409 175 +    172810 CACCACAATTCTTCTTACGTAGAAAGTGTCTTGAGTAATTCTCTAGGTTAGGTCTTGTATAATCTTGGTATCTGAGAGCCTGGAGGTCATCCCTCACAGCACATGAGAAGAGGAAGGGGATGCGGGTTTGCTGTTTTAACATTTGTGGGGCAAATTAGATGTACAAGACTCATTC
s panTro4.chrUn_GL393527         165205 175 +    341619 CACCACAATTCTTCTTATGTAGAAAGTGTGTTGAGTAATTCTCTGGGTTAGGTCTTGTACAATCTTGATATCTGAGAGCCTGGAGGTCATCCCTCACAGCACATGAGAAGAGGAAGGGGATGCGGGTTTGCTGTTTTAACATTTGTGAGGCATAGTAGATGTACAAGACTCATTC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2098979 175 +  72422247 CACCACAATTCTTCTTACGTAGAAAGTGTCTTGAGTAATTCTCTGGGTTAGGTCTTGTACAATCTTGGTATCTGAGAGCCTGGAGGTCATCTCTCACAGCACATGAGAAGAGGAGGGGGATGCGGGTTTGCTGTTTTAACATTCATAGGGCAAATTAGATGTACAAGACCCATTC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          35569 175 -     44534 CACCACAATTCTTCTTACATAGAAAGTGTCTTGAGTAATTCTGTGGGTTAAGTTTTGTACAATCTTGGTATCTAAGAGCCTGGAGGTCATCTCTCACAGCACATGAGCAGAGGAGAGGGCTGTAGGTTTGTTGTTTTAACATTCATAGGGAAAATTAGATGTACAAGACCCAATC
i rheMac3.chrUn_JH290316       C 0 I 1
s macFas5.chr10                61759082 175 -  96509753 CACCACAATTCTTCTTACATAGAAAGTGTCTTGAGTAATTCTGTGGGTTAAGTTTTGTACAATCTTGGTATCTGGGAGCCTGGAAGTCATCTCTCACAGCACATGAGCAGAGGAGAGGGCTGTAGGTTTGTTGTTTTAACATTCATAGGGAAAATTAGATGTACAAGACCCAATC
i macFas5.chr10                C 0 I 1
s papAnu2.chr13                23366148 175 - 128036923 CACCACACTTCTTCTTACATAGAAAGTGTCTTGAGTAATTCTGTGGGTTAAGTTTTGTACAATCTTGGTATCTGGGAGCCTGGAAGTCATCTCTCACAGCACATGAGCAGAGGAGAGGGCTGTAGGTTTGTTGTTTTAACATTCATAGGAAAAATTAGATGTACAAGACCCaatc
i papAnu2.chr13                C 0 I 1
s chlSab2.chr14                90920896 175 - 107702431 CACCACAATTCTTCTTACATACAAACTATCTCGAGTAATTCTGTGGGTTAGGTCTTGTACAATCTTGGTATCTGGGAGCCTGGAGGTCATCTCTCAGAGCACATGAGCAGAGGAGAGGGCTGTAGGTTTGTTGTTTTAACATTCATAGGGAAAATTAGATGTACAAGACCCAATC
i chlSab2.chr14                C 0 I 2
s calJac3.chr14                90635037 174 - 108792865 ACCCAGAATTCTTCTTATGTAGAAAGTGTGTTGAGTTAATCTCTGGATTAAGTCTTATACCATCTTGGTGTCTGAAAGCCTGGAGGTCATCTCTCACACCACATGAGAAGAGGAGAGGGCTATGGGTTTGCTGTTTTAACATTCGAAGGG-AAATTAGCTGTACAAGACACAATC
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49357043 175 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=3276.000000
s hg38.chr14_KI270725v1_random    89584 1 +    172810 T
s panTro4.chrUn_GL393527         165380 1 +    341619 T
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 49357218 1 + 121947112 T
i gorGor3.chr9                 I 175 C 0
s ponAbe2.chrUn                 2099154 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          35745 1 -     44534 t
i rheMac3.chrUn_JH290316       I 1 C 0
s macFas5.chr10                61759258 1 -  96509753 t
i macFas5.chr10                I 1 C 0
s papAnu2.chr13                23366324 1 - 128036923 t
i papAnu2.chr13                I 1 C 0
s chlSab2.chr14                90921073 1 - 107702431 t
i chlSab2.chr14                I 2 C 0
s calJac3.chr14                90635211 1 - 108792865 T
i calJac3.chr14                C 0 I 3
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=546.000000
s hg38.chr14_KI270725v1_random    89585 1 +    172810 T
s panTro4.chrUn_GL393527         165381 1 +    341619 T
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 49357219 1 + 121947112 T
i gorGor3.chr9                 C 0 I 2520
s ponAbe2.chrUn                 2099155 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
e rheMac3.chrUn_JH290316          35746 0 -     44534 C
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e calJac3.chr14                90635212 3 - 108792865 I
e chlSab2.chr14                90921074 0 - 107702431 C
e papAnu2.chr13                23366325 0 - 128036923 C
e macFas5.chr10                61759259 0 -  96509753 C
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=558261.000000
s hg38.chr14_KI270725v1_random    89586 354 +    172810 TTATTATTATTAttattattgttctttaagttctagggtacatgtgcacaacgtgcaggtttgttacatacgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatacctcctaatgctatccctcccccctccccccaccccacaacaggccctggtgtgtgatgttccccttcctgtgtccatatgttctcattgttcaattcccacctgtgagtgagaacatgcagtgattggtttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgc
s panTro4.chrUn_GL393527         165382 353 +    341619 TT-TTATTATTAGtattattgttctttaagttctagggtatatgtgcacaatgtgcagctttattacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatacttcttaatgctatccctcccccctccccccaccccacgacaggccctggtgtgtgatgttccccttcctgtgtctatatgttctcattgttcaattcccacctgtgagtgagaacatgcagtgattggtttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgcccctacaaaggacatgaactcatccatttttatggctgc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2099156 343 +  72422247 --------ttttttattattgttctttaagttctagggtacatgtgcgcaacgtgcaggtttgttacatatgtatacatgtgccatgtaggtgtgctgcacccattaactcgtcatttacattaggtatacctcctaatgctatccctctcccctccccccaccccatgacaggccctggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcaattccaacctaagagtgagaacatggggtgtttggttttctc-tccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggct--
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          35746 342 -     44534 --------ttttttat--atatgctttaagttctagggtgcatgtgcacaatgtgcatgtttgttacatatgtatacatgtgccatgttggtgtgcggtacccattaacttgtcatttacattaggtatatctcctaatgctatccctacctcctctccctaccccacaacaggccccggtgtgtgat-ttccccaccctgtgtccaagtgtttccactgttcaattcccacctatgagtgagaacatgtggtttttggatttttg-ttcttgcgatagtttgctgagaatgatggatttcagcttcatccatgtcccaagaaaggacatgaactcacccttttttatggctgc
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61759259 342 -  96509753 --------ttttttat--atatgctttaagttctagggtgcatgtgcacaatgtgcatgtttgttacatatgtatacatgtgccatgttggtgtgcggtacccattaacttgtcatttacattaggtatatctcctaatgctatccctacctcctctccctaccccacaacaggccccggtgtgtgat-ttccccaccttgtgtccaagtgtttccactgttcaattcccacctatgagtgagaacatgtggtttttggatttttg-ttcttgcgatagtttgctgagaatgatggatttcagcttcatccatgtcccaagaaaggacatgaactcacccttttttatggctgc
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23366325 342 - 128036923 --------ttttttat--atatactttaagttctagggtgcatgtgcacaatgtgcatgtttgttacatatgtatacatgtgtcatgttggtgtgcggtacccattaacttgtcatttacattgggtatatctcctaatgctatccctacctcctctccctaccccacaacaggccccggtgtgtgat-ttccccaccctgtgtccaagtgtttccactgttcaattcccacctatgagtgagaacatgtggtttttggatttttg-ttcttgtgatagtttgctgagaatgatggatttcagcttcatccatgtcccaagaaaggacatgaactcacccttttttatggctgc
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90921074 342 - 107702431 --------ttttttat--atatactttaagttctagggtgcatgtgcacaatgtgcatgtttgttacatatgtatacatgtgccatgttgctgtgcggtacccattaacttgtcatttacattaggtatatctcctaatgctatccctacctcctcgcgctaccccacaacaggccccggtgtgtgat-ttccccaccctgtgtgcgagtgtttccactattcaattcccacctatgagtgagaacaggtggtgtttggttttttg-ttcttgcgatagtttgctgagaatgatggatttcagcttcatccatgtcccaagaaaggacatgaactcacctttttttatggctgt
i chlSab2.chr14                C 0 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e calJac3.chr14                90635212   3 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=942009.000000
s hg38.chr14_KI270725v1_random    89940 407 +    172810 aAGCGAGGACTGAGTCAGAGAGATGGGGATGGCAGAGGAGACAAAATGTGGTCAGGGCCGTGTAAGATGTGACCCTGCTGCCATATCTGAAAGAAAGGCTGTTGGTGTTTGTAAAGGCTTTGGGCAAATTGTGCTTTGTAGACAAAACTGTAGAAGGGTCTGGGTTTAAGCTTAGTGTCAGCGTGATGAGGACTAGAGGTCGCAGTGAGCTTGTGTTAAGAAATCCACCCTGCACTTCTGGCTTTGTCTCTTTCCTGGTTTTATAGGTGGTGGGTTCCTCTATGGAATGaacgtggctctgtggaaggaacatagttaaggtcagacagacctagattccaagttcagcttcaacaactgctgaccaagtgacttttacgcaaatcagccatgtgctgtcatgaaca
s panTro4.chrUn_GL393527         165735 407 +    341619 aAGCGAGGACTGAGTCAGAGAGATGGGGATGGCAGAGGAGACAAAATGTGATCAGGGCCGTGTAAGATGTGACCCTGCTGCCATATCTGAAAGAAAGGCTGTTGGTGTTTGTAAAGGCTTTGGGCAAATTGTGCTTTGTAGACAAAACTGTAGAAGGGTCTGGGTTTAAGCTTGGTGTCAGCGTGATGAGGACTAGAGGTCGCAGTGAGCTTGTGTTAAGAAATCCACCCTGCACTTCTGGCTTTGTCTCTTTTCTGGTTTTATAGATGGTGGGTTCCTCTATGGAATGaacgtggctctgtggaaggaacatagttaaggtcagacagacctagattccaagttcagcttcaacaactgctgaccaagtgacttttatgcaaatcagccatgtgctgtcatgaaca
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2099499 405 +  72422247 --gcGAGGACTGAGTCAGAGAGATGGGGATGGCAGAGGAGATAAAATGTCGTCAGGGCCATGTAAGATGTGACCCTGCTGCCATATCTGAAAGAAAGGTTCTTGGTGTTTGTAAAGGCTTTGGGCAAATTGTGCTTTGTAGACAAAACTGTAGAAGGATCTGGGTTTAAGCTTAGTGTCAGCGTGATGAGGACTAGAGGTCGCAGTGAGCTTGTGTTAAGATATCCACCCTGCACTTGTGGCTTTGTCTCTTTTCTGGTTTTATAGGTGATGGGTTCCTCTATGgaatgaacgtggctctgtggaaggaacatagttaaggtcagacagacctagattccaagttcagcttcaacaactgctgaccaagtgacttttacgcaaatcagccatgtgctgtcatgaaca
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          36088 407 -     44534 aAGCAAGGACTGAGTCAGAGAGATGGGGGTGGCAGAGGAGACTAAATGTGGTCAGGGCCATGCAAGATGTGACTCTGCTGCCATATCTGAAGGAAAGGTTCTTGGTGTTTGTAAAGGCTTTGAGCAAGTTGTGCTTTGTAGACAAAACTGTAGAAGGGTCTGGGTTCAAGCTTAGTGTCAGCGTGATGGGAACTAGAATTCGCAGTGAGCTTGTGTTAAGAACTCCACCATGCATTTCTGGCTTTGTCTCTTCTCTGGTTTTATAGGTGGTGGGTTCCACTACGGAATGaatgtggctctgtggaaggaacatagttgtggtcagacagacctagattccaagttcagcttcaacaactgctgaccaagtgacttttatgcaaatcagccatgtgctctcatgaaca
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61759601 407 -  96509753 aAGCAAGGACTGAGTCAGAGAGATGGGGGTGGCAGAGGAGACTAAATGTGGTCAGGGCCATGCAAGATGTGACTCTGCTGCCATATCTGAAGGAAAGGTTCTTGGTGTTTTTAAAGGCTTTGAGCAAGTTGTGCTTTGTAGACCAAACTGTAGAAGGGTCTGGGTTCAAGCTTAGTGTCAGCGTGATGGGAACTAGAATTCGCAGTGAGCTTGTGTTAAGAACTCCACCATGCATTTCTGGCTTTGTCTCTTCTCTGGTTTTATAGGCGGTGGGTTCCTCCATGGAATGaatgtggctctgtggaaggaacatagttgtggtcagacagacctagattccaagttcagcttcaacaactgctgaccaagtgacttttatgcaaatcagccatgtgctctcatgaaca
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23366667 407 - 128036923 aagcAAGGACTGAGTCAGAGAGATGGGGGTGGCAGAGGAGACTAAATGTGGTCAGGGCCATGCAAGATGTGACTCTGCTGCCATATCTGAAGGAAAGGTTCTTGGTGTTTGTAAAGGCTTTGAGCAAGTTGTGCTTTGTAGACAAAACTGTAGAAGGGTCTGGGTTCAAGCTTAGTGTCAGCGTGATGGGGATTAGAATTCGCAGTAAGCTTGTGTTAAGAACTCCACCATGCATTTCTGGCTTTGTCTCTTCTCTGGTTTTATAGGCAGTGGGTTCCTCTATGGAATGAATGTGGCTCTGTGGAAGGAACATAGTTGTGGTCAGACAGACCTAGATTCCAAGTTCAGCTTCAACAACTGCTGACCAACTGACTTTTATGCAAATCAGCCATGTGCTCTCATGAACA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90921416 407 - 107702431 aAGCAAGTACTGAGTCAGAGAGATGGGGGTGGCAGAGGTGACTAAATGTGGTGAGCACCATGTACGATGTGACCCTGCTGCCATATCTGAAGGAAAGGTTCTTGGTGTTTATAAAGGCTTTGAGCAAGTTGTGCTTTGTAGACAAAACTGTAGAAGGGTCTGGGTTCAAGCTTAGTGTCAGCGTGATGGGGACTAGAATTCGCAGTGAGTTTGTGTTAAGAACTCCACCACGCATTTCTGGCTTTGCCTCTTCTCTAGTTTTATAGGTGGTGGGGTCCTCTATGGAATGaatgtggctctgtggaaggaacatagttaaggtcagacagacctagattccaagttcaccttcaacaactgctgaccaagtgacttttatgcaaatcagccatgtgctctcatgaaca
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90635215 406 - 108792865 AAGCAAGGACTGAGTCAGAGAGATGGGGATGGCCAAGAAGATGAAATGTGGTCAGGGACATGCAAGATGTGACCTTGCTACTGTATAT-AAAAAAAGTTTCTTGGTGTTTGTAAAGGTTTTGAACAAGTTGACCTTTGTAGACAAAACTGTAGAAGAGTTTGAGTTTAAGCTGAGTGTCAGTGTGATGAGGAGCAGAGTTAGCATTGACCTTGTGTTAAGAAATCCACCCTGCATCTCTAGCTTTGTCTCATCTCTGGTTTTATAGGTTGTGGATTCCTCTATGGGATGaatgtggctctgtggaaggaacatagttaaggtcagacagtcctggattccaagttcagcttcaaaaactgctgatcaagtgacttttatgcaaattagccatgtgctctcatgaaca
i calJac3.chr14                I 3 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=229466.000000
s hg38.chr14_KI270725v1_random    90347 80 +    172810 gtttcctcatgtgtgaaatggggCACTGAGGATGTGAAGGGGTGTCCTGAGGATTCCGCCAGCTGATGCACCATGAAGTG
s panTro4.chrUn_GL393527         166142 80 +    341619 gtttcctcatgtgtgaaatggggCACTGAGGATGTGAAGGGGTGTCCTGAGGGTTCCGCCAGCTGATGCACCATGAAATG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2099904 80 +  72422247 gtttcctcatgtgtgaaatggggcactgaggatgtgaAGGGGTGTCCTGAGGGTTCCGCCAGCTGATGCACCATGAAGTG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          36495 79 -     44534 gtttcctcctgtgtgtaatggggcactgagggtatgaaaggg-gtcctgagggttccaccagctgacacaccatgaAGTG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61760008 79 -  96509753 gtttcctcctgtgtgtaatggggCACTGAGGGTATGAAAGGG-GTCCTGAGGGTTCCACCAGCTGACACACCATGAAGTG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23367074 79 - 128036923 GTTTCCTCCTGTGTGTAACGGGGCACTGAGGGTATGAAAGGG-GTCCTGAGGGATCCACCAGCTGACACACCATGAAGTG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90921823 80 - 107702431 ggttcctcatgtgtgaaatggggCACTGAGGATATGAAAGGGTGTCCTGAGGGTTCCACCAGCTGATGCACCATGAAGTG
i chlSab2.chr14                C 0 C 0
s nasLar1.chr13                22695535 80 - 126811233 gtttcctcatgtgtaaaatggggCACTGAGGATATGAAGGGGTGTCCTGAGGGTTCCACCAGCTGACGCACCATGAAGTG
i nasLar1.chr13                N 0 I 1520
s calJac3.chr14                90635621 80 - 108792865 gtttccttatgtgtgaaatggggaactgaggatataaaggggtgtcctgagggttgtaccagctgatgcaCCATGAGGTG
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=451605.000000
s hg38.chr14_KI270725v1_random    90427 170 +    172810 TACATACATGTATAGACAGACACACACACATACAT----GAGAAGAGTATCTAGTGCCCCTTTTATGCATTCTTGAGTAACTCAGAATGTTATGTGAGATATTAACAGTCATATTTCATTTTCAACTAAAATTATCAATATTTATCTTATAACTAACAGATGCTTCTCTGTACA
s panTro4.chrUn_GL393527         166222 170 +    341619 TACATACATGTATAGACAGACACACATACATACAT----GAGAAGAGTATCTAGTGCCCCTTTTATGCATTCTGGAGTAACTCAGAATGTTATGTGAGATATTAACAGTCATATGTCATTTTCAACTAAAATTATCAATATTTATCTTATAACTAACAGATGCTTCTCTGTACA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2099984 170 +  72422247 TACATACATGTATAGACAGACACACACACATACAT----GAGAAGAGTATCTAGTGCCCCTTTTATGCATTCTTGAGTAACTCAGAATGTTATGTGAGATATTAACAGACATATGTCATTTTCAATTAAAATTATCAATATTTATCTTATAACTAACAGATGCTTCTCTGTACA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          36574 166 -     44534 AACATACATGTAGAGACAGACACACATACACACAC------GAGGAGTATCTAATGCCCCTTTTATGCATCCTTGAGTAACTCAGAATGTTATGTGAGATACTACCAGTCACA--TCATTTTCAACTAAAATTATCAATATTTATCTTATAACTAAGAGTTGCCTCTCCGTACA
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61760087 166 -  96509753 AACATACATGTAGAGACAGACACACATACACACAC------GAGGAGTATCTAATGCCCCTTTTATGCATCCTTGAGTAACTCAGAATGTTATGTGAGATACTACCAGTCACA--TCATTTTCAACTAAAATTATCAATATTTATCTTATAACTAAGAGTTGCCTCTCCGTACA
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23367153 166 - 128036923 AACATACATGTagagacagacacacatacacacac------gaggAGTATCTAATGCCCCTTTTATGGATCCTTGAGTAACTCAGAATGTTATGTGAGATACTACCAGTCACA--TCATTTTCAACTAAAAGTATCAATATTTATCTTATAACTAAGAGTTGCCTCTCTGTACA
i papAnu2.chr13                C 0 I 1573
s chlSab2.chr14                90921903 170 - 107702431 AACATACATGTATAGacagacacacacacacacacGC--GAGAAGAGTATCTAATGCCCCTTTTATGCATCCTTGAGTAACTCAGAATGTTATGTGAGATACTACCAGTCATG--TCATTTTCAACTAAAATTATCAATATTTATCTTATAACTAAGAGATGCCTCTCTGTACA
i chlSab2.chr14                C 0 C 0
s nasLar1.chr13                22697135 174 - 126811233 CACATACATGTATAGACAGACACACACACACACGTACATGAGAAGAGTATCTAGTGCTCCTTTTGTGGATCCTTGAATAACTCAGAATGTTGTGTCAGATATTACTAGTCATATGTCATTTTCAACTAAAATTATCAATATTTGTCTTGTAACTAAGAGATGCCTCTCTGTACA
i nasLar1.chr13                I 1520 C 0
s calJac3.chr14                90635701 169 - 108792865 CACATACATCTATAGATGAACACACTCACATACTT----GAGAAGAGAATCTAATGCACATTTTATGCATCCTTGAATAACTCAGAATGTTGTGTGAGATATTACTAGTCACATATCA-TTTCAACCAAAATTATTCATATTTATCTTATAATTAGCAGATGCCTCTCTGTACA
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=84246.000000
s hg38.chr14_KI270725v1_random    90597 29 +    172810 CTGTAGGTTTCATGTGCACTTCTTCAATC
s panTro4.chrUn_GL393527         166392 29 +    341619 CTGTAGGTTTCATGTACCTTTCTTCAATC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2100154 29 +  72422247 CTGTAGGTTTCATGTACATTTCTTCAATC
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          36740 29 -     44534 CTGTAGGTTTCATGTGCATTTCTTCAATC
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61760253 29 -  96509753 CTGTAGGTTTCATGTGCATTTCTTCAATC
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23368892 29 - 128036923 CTGTAGGTTTCATGTGCATTTCTTCAATC
i papAnu2.chr13                I 1573 C 0
s chlSab2.chr14                90922073 29 - 107702431 CTGTAGGTTTCATGTGCATTTCTTCAATC
i chlSab2.chr14                C 0 C 0
s nasLar1.chr13                22697309 29 - 126811233 CTGTAGGTTTCATGTACATTTCTTCAATC
i nasLar1.chr13                C 0 N 0
s calJac3.chr14                90635870 29 - 108792865 GTATAGTATTTATGTAAATTTCTTCAATC
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=479507.000000
s hg38.chr14_KI270725v1_random    90626 213 +    172810 ACAAAATTTTTCACCAATCTATTTATGTCTAGTATCAGAAAATTAAGCAAGGAGATTG-CAAACCAACACAACACCTTTAGTCTGGATTTTCCCGGAGCCCCATTtgtgttagtgtccttgggctactgtaacaagttctcaaaaatgtggtagcttcaaacaacaggaatggaatctctcatagtt--------cagaagtccag-atcagtttcactgggc
s panTro4.chrUn_GL393527         166421 213 +    341619 ACAAAATTTTTCACCGATCTATTTATGTCTAGTATCAGAAAGTTAAGCAAGGAGATTG-CAAACCAACACAGCACCTTTAGTCTGGATTTTCCCGGAGCCCCATTtgtgttactgtcctcgggctactgtaacaagttctcaaaaatgtggtagcttcaaacaacaggaatggaatctttcatagtt--------cagaagtccag-atcagtttcactgggc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2100183 214 +  72422247 ACAAAATTTTTCACCAATCTATTTATGTCTAGTATCAGAAAGTTAAGCAAGGAGATTG-CAAACCAACACAGCACCTTTAGTCTGGATTTTCCCAGAGCCCCATTtgtgttagtgtcctcgggctactgtaacaagttgtcaaaaatgtggtagcttcaaacaacaggaatggaatctctcatagtt--------cagaagtccagaatcagtttcactgggc
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          36769 223 -     44534 ACAAAATTTTTCACCAATCTATTTATGTCTAATATCAGAAAGTTAAGCAAGGAGATTGAAAAACCACCACAGCACCTGTAGTCTGGATTTTCCCAGAGCCCCATTtgtgttagtgtccttgggctactgtaacaagttctcaaaaatgtggtagcttcaaacaacaggaatggaatcactcatagttctggagaccagaagtccagaatcagtttcactgggc
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61760282 223 -  96509753 ACAAAATTTTTCACCAATCTATTTATGTCTAATATCAGAAAGTTAAGCAAGGAGATTGAAAAACCACCACAGCACCTGTAGTCTGGATTTTCCCGGAGCCCCATTtgtgttagtgtccttgggctactgtaacaagttctcaaaaatgtggtagcttcaaacaacaggaatggaatcactcatagttctggagaccagaagtccagaatcagtttcactgggc
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23368921 222 - 128036923 ACAAAATTTTTCACCAATCTATTTATGTCTAATATCAGAAAGTTAAGCAAGGAGATTG-CAAACCAACACAGCACCTTTCGTCTGGATTTTCCTGGAGCCCCATTTGTGTTAGTGTCCTCGGGTTACTGTAACAAGTTCTCAAAAATGTGGTAGCTTCAAGCAACAGGAATGGAATcactcatagttctggagaccagaagtccagAATCAGTTTCGCTGGTA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90922102 222 - 107702431 ACTAAATTTTTCACCAATCTATTTATGTCTAATATCAGAAAGTTAAGCAAGGAGATTGAAAAACCACCACAGCACTTGTAGTCTGGATTTTCCCGGAGCCCCATTtgtgttagtgtcctcgagttactgtaacaag-tctcaaaaatgtggtagcttcaaacaacaggaatggaatcactcatagttctggagaccagaagtccagaatcagtttcactgggc
i chlSab2.chr14                C 0 I 971
s calJac3.chr14                90635899 219 - 108792865 ACAAAATTTTCCACCAATCTATTTATTTCTAGTATTAGAAATTTAAGGAAGGAGATTG-CAAATCAACAAAGCACCTTTAGTGT-GATTTTCCCTAAGCCCCATTtgtgttagtgtcctgggg-tactgtaacaagttctcaaaaac-tgatagcttaaaagaacaggaatagcatctctcatagctctggagaccagaagtccagaatcagtttcactgggc
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=191523.000000
s hg38.chr14_KI270725v1_random    90839 84 +    172810 taagatcttggagtcatcagttctggctccttctgaagctctagggagcagtctgatttagctcttccagcttctggtggcttc
s panTro4.chrUn_GL393527         166634 84 +    341619 taagatcttggagtcatcagttctggctccttctgaagctctagggagcagtctgatttagctcttccagcttctggtggcttc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2100397 84 +  72422247 taagatcttggagtcatcagttctggctccttccgaagctctagggagcagtctgatttagctcttccagcttctggtggcttc
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          36992 84 -     44534 taagatcttggagacatcggttctagccccttcagaagctctaggaaggagtctgatttagctctttcagcttctggtggctcc
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61760505 84 -  96509753 taagatcttggagacatcggttctagccccttcagaagctctaggaaggagtctgatttagctctttcagcttctggtggcttc
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23369143 84 - 128036923 TAAGGTCTTGGAGTCGTCAGGTCTATCTCCTTCAGAAGCTCTAGGGAGCAGTCTGATTTaactcttccagcttctggtggcttc
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90923295 84 - 107702431 taaggtcttggagtcgtcaggtctagctccttcagaagctctagggagcagtctgatttaactcttccagcttctggtggcttc
i chlSab2.chr14                I 971 C 0
s calJac3.chr14                90636118 84 - 108792865 tgagatcttggagtcatcaagtctggctccttcagaagctctagggaggagtctgatttagttcttccaacttccagtggcTTC
i calJac3.chr14                C 0 I 926
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=-916.000000
s hg38.chr14_KI270725v1_random    90923 1 +    172810 t
s panTro4.chrUn_GL393527         166718 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2100481 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          37076 1 -     44534 a
i rheMac3.chrUn_JH290316       C 0 I 1
s macFas5.chr10                61760589 1 -  96509753 a
i macFas5.chr10                C 0 I 973
s papAnu2.chr13                23369227 1 - 128036923 c
i papAnu2.chr13                C 0 I 1
s chlSab2.chr14                90923379 1 - 107702431 c
i chlSab2.chr14                C 0 I 1
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e calJac3.chr14                90636202 926 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=4011.000000
s hg38.chr14_KI270725v1_random    90924 2 +    172810 ct
s panTro4.chrUn_GL393527         166719 2 +    341619 ct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2100482 2 +  72422247 ct
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          37078 2 -     44534 ct
i rheMac3.chrUn_JH290316       I 1 C 0
s macFas5.chr10                61761563 2 -  96509753 ct
i macFas5.chr10                I 973 C 0
s papAnu2.chr13                23369229 2 - 128036923 CT
i papAnu2.chr13                I 1 C 0
s chlSab2.chr14                90923381 2 - 107702431 ct
i chlSab2.chr14                I 1 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e calJac3.chr14                90636202 926 - 108792865 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=854786.000000
s hg38.chr14_KI270725v1_random    90926 421 +    172810 ctcccggaatgtggacacatcactgcaatctctgtctctgtgttcacattgccttctccACTTCAGTCTATGCTAAATGTCTCTCTACCTCTTG--GTTTTTTTAGGACACTTGAGTTTGCATTTAAGTCCCAGTTGATTAATCTAAGAATATCTCCCTGTTTCAAGCTCCTTAATTTACACCTGCAAAAGCTGTTTTCCCAAATGAGATACATGCATAATCTTCTTG----GAATGAAACCTCACTATTTGGGGATGATACTCAGTACTACACCATTACATAACCAGGTCTCAGTGTTAGTCCAGTACATACATCACAAtctctctctctctctctct----------------------cCATACACCCTGGCTTCCTCCTTTTCTCAATGTCATAAATCTCTTCAATTCCTTAAGTGTATCCAGTGATACCtataaacaaataagt
s panTro4.chrUn_GL393527         166721 445 +    341619 ctcccgggatgtggacacatcactgcaatctctgtctctgtgttcacattgccttctccacttcagtctatgctaaatgtgtctctacctcttgttttttttttaggacacttgagtttgcatttaagtccaagttgattaatctaagaccatctccctgattcaagctccttaatttacacctgcaaaagctgttttcccaaatgagataCATGCATAGTCTTCTTG----GAATGAAACCTCACTATTTGGGGATGATACTCAGTAGTACACCATTACATAACCAGGTCTCAGTGTTAGTCCTGTACATACATCAGAAtctctctctctctctctctctctctctctctctctctctcCCCACACACCCTGGCTTCCTCCTTTTCTCAATGTCATAAATCTCTTCAATTCCTTAAGTGTATCCAGTGATACCtataaacaaataagt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2100484 435 +  72422247 ctcctgggatgtggacacatcactgcaatctctgtctctgtgttcacattgccttctccacttcagtctatgctaaatgtctctctacctcttg--ttttttttaggacac--gagttcgcatttaagtcccagttgattaatctaagaccatcaccctgtttcaagctccttaatttacacctgcaaaagctgttttcccaaatgagataCATGCCTAGTCTCCTTG----GAATGAAACCTCACTATTTGGGGATGATACCTAGTACTACACCATTACATAACCAGGTCTCAGTGTTAGTCTTGTACATACATCACAAtctctctctctctttctctctctctctctctctct------cCATACACCCTGGCTTCCTCCTTTTCTCAATGTCATAAATCTCTTCAATTCCTTAAGTGTATCCAGTGATACCtataaacaaataagt
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          37080 434 -     44534 ctccttggatgtggacacattattgccatgtctatctctgtgttcagattgccttcttctcttcagtctatggtaaatgtctctctacctctt---tttttctcaggacacttgtgttcgcatttagggcccacttgattaatctaacatcatctgcctgtttcaagttccttaatttatacctgcaaaagcccatttcccaaatcagataCAGGCATATGCTTCTTG----GAATGAAACCTCACTATTTGGGGATGATACTCAGTACTACACCATCATAGATCAAGGTCTCAGTTTTAGTCCTATACACACATCACAAGCTCAAACCCTCTCTCTCAC--------TGTTTCTCTCTCCCCACACATCTTGTCTTCCTCATTTTCTCAAGGTCATAAATCACTTCACTTCCTTAAGTGTATACGGTGATACCTATAAACACATAAGT
i rheMac3.chrUn_JH290316       C 0 I 66
s macFas5.chr10                61761565 443 -  96509753 ctccttggctgtggacacatcactgcgatctctgtctctgtgttcacattgccttctcctcttcagtctatggtaagtgtctctctacctcttg--tttttctcaggacacttgtgttcgcatttaaggcccagttgattaatctaagatcatctccttgtttcaagctccttaatttacacctgcaaaagcccttttcccaaataaaatacatgcatattcTTCTTG----GAATGAAACCTCACTCTTTGGGGATGATACTCAGTACTACATGATTACAGAAACACTTCTCAGGGTTAGTCCTGTACAAACAtctctctctctctctctctctctctctcactctgtctctctctctctcCACACATCTTGGCTTCCTCCTTTTCTCATTGTCATAAATCTCTTCACATCCTTAAGTGTGTCCAGTGATACCCACAAATAAACaagt
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23369231 413 - 128036923 CTCCTTGGCTGTGGACACATCACTGTGATCTCTGTCTCTGTGttcacattgccttctcctcttcAGTCTATGGTAAGTGTCTCTCTACCTCTG---TTTTTCTCAGGACACTTGTGTTCGCATTTAAGGCCCAGTTGATTAATCTAAGATCATCTCCTTGTTTCAAGCTCCTTAATTTACACCTGCAAAAgcccttttctcaaaaaaaatacatgtatattctTCTTG----GAATGAAACCTCACTCTTT-GGGATGATACTCAGTACTACATCATTACAGAAACAGTTCTCAGTGTTAGTCCTGTACAAACAtcacta----------------------------tctctctctctctccacacatcTTGGCTTCCTCCTTTTCTCAATGTCGTAGATCTCTTCACATCCTTAAGTGTGTCCAATGATACCCACAAATAAACaagt
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90923383 443 - 107702431 ctccttgactgtggacacatcactgcaatctctgtctctgtattcacattgcgttctcctcttcagtctatggtaagtgtctctctacctcttg--tttttctcaggacacttgtgttcgcatttaaggcccagttgatttatctaagatcatctccttgtttcaagctccttaatttacacctgcaaaagcccttttcccaaataaaatacatgcatattcTTCTTG----TAATGAAACCTCACTCTTTGGGGATGATACTCAGTACTGCATCATTACAGAAATAGTTCTCAGTGTTAGTCCTGTACAAACAtctctctctctctctctctctctctctctctctctctctctctctctcCACACATCTTGGCTTCCTCCTTTTCTCAATGTCACAAATCTCTTCACATCCTTAAGTGTGTCCGGTGATACCCAtaaataaacaagt
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90637128 429 - 108792865 CTCCTTGGCTGTGGTCAcatcactgcaatctctgactctgtgttcaaactgccttctcctcttcagtttatgttaagtgtctctctacgtctt---tttttctcaggacacttgtgatcacatttagggcccacttgat-----taagatcatctctctgtttcaagctccttaatttatacctgcaaaagcccttttcccaaataagataCATGCATAGCCTTCTTGAAATGAATGAAACCTCATTATTTGGGGATGATACTCGGTACTACACCATTATAGAACCAGGTCTCATTGTTAGTACTGTACATACCTCACAGtctccctctctctttc------------tctctctctctctcCCCACATCCCAGATTCCTCCTTTTCTCAAGGTCATAAATCTCTTTACTTCCCTAAGTGTATCCAGTGATACCtgtaaaccaatgagt
i calJac3.chr14                I 926 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=690404.000000
s hg38.chr14_KI270725v1_random    91347 433 +    172810 atctgagaaaagtctcaatcagtttagaaatttatttggtcaaagttaaagaaatatcagtgaaacagcctcaggaggtcttgagaacgtgtgtcaaaggtcgtcgggctacaggttggtttcacacgttttagggagacacaagatatcaatcaatacgtgtaagctgtacattgctttgatatggaaaggcaggacagcccgaagga-ggggggatgttggggacttccaggtcataggtggattcagagatttcataggtggttgaaagcgtttatctaatgacctgtaatcaacacaagggagtttctgggtttagaaaaagggttttggagccaaggttgcatcatgcagatgaagcctccaggtagcaggcttcagagagaatagattgtaattgtttcttagtagacttaaaaggtgccaaactctt
s panTro4.chrUn_GL393527         167166 434 +    341619 atctgagaaaagtctcaatcagtttagaaatttatttggtcaaagttaaagaaatatcagtgaaacagcctcaggaggtcttgagaacgtgtgtcaaaggtcgtcgggctacaggttggttttacacgttttagggagacataagatatcaaccaatacgtgtaagctgtacattgctttgatatggaaaggcaggacagcctgaaggagggggggatgttggggacttccaggtcataggtggattcaaagatttcataggtggttgaaagagtttatctaatgacctgtaatcaacacaagggagtttctgggtttagaaaaagggttttggagccaaggttgcatcatgcagatgaagcctccaggtagcaggcttcagagagaatagattgtaattgtttcttagtagacttaaaaggtgccaaactctt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2100919 433 +  72422247 atctgagaaaagtctcaatcaatttagaaatttatttggtcaaagttaaagaaatatcagtgaaacagcctcaggaggtcttcagaatgtgtgtcaaaggtcatcgggctgcaggttggttttacacgttttagggagacataagatatcaatcaatacgtgtaagctgtacattgctttgatatggaaaggcaggacagcccgaagga-ggggggatgttggggacttccaggtcataggtggattcaaagatttcataggtggttgaaagagtttatctaatgacctgtaatcaacacaagggagtttctgggtttagaaaaagggttttggagccaaggttgcatcatgcagatgaagccctcaggtagcaggcttcagagagaatagattgtaattgtttctcagtagacttaaaaggtgccaaactctt
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr10                61762008 429 -  96509753 atctgagacaagtcacattcattttagaaatttatttggtcaaagttaaagacatatcagtgaaatagcctcagaaggtcttaagaatgtgtgcccaagatggtcgggctacagcttggttttacatgtcttagggagacataagatatcaatcaatatgtgtaagctgtacattgctttgctatggaaaggctgaacagcccgaagga-gggggcgtgttggggacttccgggtcataggtggattcaaagatttcataaa-agaggaaagagtttatctaatgacctgtaatcaacagaagggagtttctaggtttagaaaaagggtcgtggagccaaggtttcatcatgaagatgaagcccccaggtagcaggcttcagagagaatagattgtaattgtttcttagcagac-taaaaggtgccatactt--
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23369644 430 - 128036923 atctgagacaagtcaCTTTCATTTTAGAAATCTATTTGGTCAAAGTT-AAGACGTATCAGTGAAACAACCTCAGGATGTCTTGAGAATGTGTGCCCAGGGTGGTCgggctacagcttggttttacacattttcagGAGACATAAGAtgtcaatcaatatgtgtaagctGTACATTGCTTTGATATGGAAAGGCAGGACAGCCCGAAGGA-GGGGGCGTGTTGGGGACTTCcgggtcataggtggattcaaagatttcaTAAA-GGAGGAAAGAGTTTATCTAATGACCTGTAATCAACAGAAGGGAGTTTCTAGGTTTAGAAAAATGGTTGTGGAGCCAAGGTTTCATCATGAAGATGAAGCccccaggtagcaggcttcagagagaatagattgtaattGTTTCTTAGCAGAC-TAAAAGGTGCCAAACTCTT
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90923826 429 - 107702431 atctgagacaagtcacattcattttagaaatttatttggtcaaagttaaagacatatcagtgaaacagtctcagaaggtctcaagaatgtgtgcccaaggtggtcgggctacagcttgattttacacattttagggagacataagatatcaatcaatatgtgtaagctgtacattgctttgatatggaaaggcaggacagcccgaagga-gggggcgtgttggggacttccaggtcatagttggattcaaagatttcataaa-agaggaaagagtttatctaatgacctgtaatcaacaaaagggagtttctaggtttagaaaa--gggtggtgagccaaggtttcatcatgaagatgaagcccccaggtagcaggcttcagagagagtagattgtaattgtttcttagcagac-taaaaggtgccaaactctt
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90637557 418 - 108792865 atcagagacaagtctcaatcaatttagaaatttatttgatcaaagttaaagacaaatcagtgaaacagcctcaggaggtcttgagaacatgtgcccaagattgtcgggctacagcttggttttatgcattttacgaagacataagatatcaatcaatatgtgtaagctgtacattggtttgatatgaaaaggcaggacagaccaaagga-gggtgggtgttaagaacttccaggtcataggtgtattcaaagatttcataggtggttgaaagtgtttatctaatgacctgtaatcaagagtaggtagtttctgggttaagaaaaagagttgtggagccaaggttttatcatgaagatgaagcctt-------taggctccagagaagatagat--------gttcttaacaggcttaaaaggtgccagactttt
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e rheMac3.chrUn_JH290316          37514  66 -     44534 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=667015.000000
s hg38.chr14_KI270725v1_random    91780 309 +    172810 agttaaatctctctgggtcaggaaagagatttaaaa------aggaatctctacagaatgtagatttttcccacaagaaccagctttgcagaggcatttttaa-atacattaaataacaatatcttggggaaaatactttgatttctcttaggacgtggtatctgtcacattggtatcttattgctataaagagttttctttgtcagtctcaaggtctctgtcttcatattaaaagctggtcagttgtgcctgaattttaaagggaagagggtaagttcaggcatatccaatcatccgttccgatcatggactgca
s panTro4.chrUn_GL393527         167600 308 +    341619 agttaaatctctctgggtcaggaaagagacttaaaa------aggaatctttacggaatgtagatttttcccacaagaaccagctttgcagaggcatttttaa-atacattaaataacaatatcttggggaaaatactttgatttctcttaggacgtggtatctgtcacattggtatcttattgctataaagagttttctttgtcagtctcaaggtctctgtcttcatattaaaa-ctggtcagttgtgcctgaattttaaagggaagagggtaagttaaggcatatccaatcatccgttccgatcatggactgca
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2101352 315 +  72422247 agttaaatctctctgggtcaggaaagagacttaaaaaggggtaggaatctctacagaatgtagatttttcccacaagaaccagctttgcagaggcatttttaa-atacattaaataacaatatcttggggaaaatactttgatttctcttaggacgtggtatctgtcacattggtatcttattgctataaagagttttctttgtcagtctcaaggtctctgtcttcatattaaaagctggtcagttgtgcctgaattttaaagggaagagggtaagttaaggcatatccaatcatccgttccgatcatggactgca
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          37580 315 -     44534 agttaaatcgctctgggtcaggaaagagactt-aaaagggttgggaatctctactgaatgcagatttttcccacaagaaacagctttgcagagacatttttaatatacaccaaataacaatatcttggggaaaatactttgatttctcctcgggcctggcatctgtcgtgttggtatcttattgcgacagacagtttgctttgtcagtctcaaggtctctgtcttaatattaagcgatggtcagttatgtctgaattttaaagggaagagggtaagttaaggcatatccaatcatccattcccatcatggaccgta
i rheMac3.chrUn_JH290316       I 66 C 0
s macFas5.chr10                61762437 315 -  96509753 agttaaatctctctgggtccggaaagagacttaaaaaggggtaggaatctctacagaatatggatttttcccacaagaaacagctttgcagagacattttcaa-atacatcaaataacaatatcttggagaaaataccttgatttctcctcgagcctggtatctgtcatgttggtatcttactactataaagagtttcctttgtcagtctcaaggtctctgtcttaatatcaaaaactggtcagttgtgtctgaattgtaaagggtggtaggtaaattaaggcatattcaatcatccattcccatcatggcctgta
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23370074 315 - 128036923 AGTTAAATCTCTCTGGGTCAGGAAAGAGACTTAAAAAGGGGTAGGAATTTCTACAGAATatggatttttcccacaagaaacAGCTTTGCAGAGACATTTTCAA-ATACATCAAATAACAATATCTTGGggaaaatactttgatttctccTCGAGCCTGGTATCTGTCATGTTGGTATCTTACTACTATAAAGAGTTTGCTTTGTCAGTCTCAAGGTCTCTGTCTTAATACCAAAAACTGGTCAGTTGTGTCTGAATTGTAAAGGGTGGTAGGTAAATTAAGGCATATTCAATCATccattcccatcatggcctgTA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90924255 314 - 107702431 agttaaatctctctgggtcaggaaagagacttaaaaaggggtaggaatctctacagaatatggatttttcccacaagaaacagctttgcagagacattttcaa-atacatcaaataacaatatcttggagaaaatactttgatttctcctcgagcctggt-cctgtcatgttggtatcttactactataaagagtttgctttgtcagtctcaaggtctctgtcttaatatcaaaaactggtcagttgtgtctgaattgtaaagggtggtaggtaaattaaggcatattcaatcatccattcccatcatggcctgta
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90637975 314 - 108792865 agttaagtctctctgtgtcaggacagagagttgaaaagaggtaggattctctacagaatgtagatcttttccacaagaaacagctttgcagaagcattttaaa-atatattacataaaaatatcttggggaaaatactttgatttctcctagggcctggtatctgtcatgttagtatcttattgctacaaagagtttgtttca-cagtctcatgatctctgttttaatattaaaagctggtcagttgtgcctgaatttcaaagggaggaggataacttaaggcatatctggtcatccatccccatcatggtctgtg
i calJac3.chr14                C 0 I 1623
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=25616.000000
s hg38.chr14_KI270725v1_random    92089 13 +    172810 t-tgtatttcaggt
s panTro4.chrUn_GL393527         167908 13 +    341619 t-tgtatttcaggt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2101667 12 +  72422247 --tgtatttcaggt
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          37895 13 -     44534 c-tgtatttcaggt
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61762752 14 -  96509753 cttgtatttcaggt
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23370389 14 - 128036923 CTTGTATTTCAGGT
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90924569 14 - 107702431 cttgtatttcaggt
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90639912 13 - 108792865 -ttgtattttaggt
i calJac3.chr14                I 1623 C 0
e gorGor3.chr9                 49357220 2520 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=27696.000000
s hg38.chr14_KI270725v1_random    92102 9 +    172810 tgattttgg
s panTro4.chrUn_GL393527         167921 9 +    341619 tgattttgg
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 49359740 9 + 121947112 ttattttgg
i gorGor3.chr9                 I 2520 I 1454
s ponAbe2.chrUn                 2101679 9 +  72422247 tgattttgg
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          37908 9 -     44534 tgattttgg
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61762766 9 -  96509753 tgattttgg
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23370403 9 - 128036923 TGATTTTGG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90924583 9 - 107702431 tgattttgg
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90639925 9 - 108792865 tgattttag
i calJac3.chr14                C 0 C 0
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=539988.000000
s hg38.chr14_KI270725v1_random    92111 254 +    172810 tgtgtccttggttgagaggaggagttcattcagttggttagggagcttagagtttcatttttggtttacTCACCTATGTCCAGGTAAGAGGGCCCCACACAGGAGGTCTTGCTCAGAACCTGGCTTGCAGGGCTGCTT--ACAGACCTTCTATGTCTCCTGTTGTCATGCACAAGGAAGGACACAGCCAATGACAACCCTCAGCCATCCAGGGAGAAGCTGTGTCTGCAGAGGATGGTCATGAGCTGTGAGTCTAG
s panTro4.chrUn_GL393527         167930 254 +    341619 tgtgtccttggctgagaggaggagttcattcagttggttagggagcttagagtttcatttttggtttacaCACCTATGTCCAGGTAAGAGGGCCCCACACAGGAGGGCTTGCTCAGAACCTGGCTTGCAGGGCTGCTT--ACAGACCTTCTATGTCTCCTGTTGTCATGCACAAGGAAGGACACAGACAATGACAACCCTCAGCCATCCGGGGAGAAGCTGTGTCTGCAGAGGACGGTCATGAGCTGTGAGTCTAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2101688 254 +  72422247 tgtgtccttggctgagaggaggagttcattcagttggttagggagcttagagtttcatttttggtttgcaCACCTATGTCCAGGTAAGAGGGCCCCACACAGGAGGGCTTGCTCAGAACCTGGCTTGCAGGGCTGCTT--ACAGACCTTCTGTGTCTCCTGTTGTCATGCACAAGGCAGGACACAGCCAATGACAACCCTCAGCCATCCGGGGAGAAGCTGTGTCTGCAGAGGACGGTCATGAGCTGTGAGTCTGG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          37917 254 -     44534 tgtgttcttggctgagaggaggagttcgttcagttggccagggagcttagagtttcatttttggtttacaTACCTATGTCCAAGTAAGAGGTCCCCACACAGGAAGGCTTGCGAGGAACCTGGCTTGCAGGGCTGCTT--ACAGACCGTCTGTGTCTCCTGTTGTCATGCACAAGGAAGGACACAGCCAATGACTACCCTCAGTCATCTCGGGAGAAGCCGTTTCTGCAGAGGACAGTCATGAGCTGTGAGTGTAG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61762775 256 -  96509753 tgtgttcttggctgagaggaggagtttatgcagttggctagagagcatatagtgtcatttttggtttacaCACCTGTGTCCAGGTAAGAGGGACTCACACAGGAGGGCTTGCACAGAACCTGGCTTGCAGGGCTGCTTACACAGACCTGCTCTGTCTCCTGTTGTCATGCACAAGGAAGGACACAGCCAATGACTACCTTCAGCCATCTGGGGAGAACCTGTGTCTGCAGAGGGCTATCATGAGCTATGGGTCAGG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23370412 254 - 128036923 TGTATTCTTGGCTGAGAGGAGGAGTTTATGCAGTTGGCTAGAGAGAATATAGTGTCATTTTTGGTTTACACACCTGTGTCCAGGTAAGAGGGACTCACACAGGAGGGCTTGCACAGAACCTGGCTTGCAGGGCTGCTT--ACAGACCTGCTCTGTCTCCTGTTGTCATGCACAAGGAAGGACACAGCCAATGACTACCTTCAGCCAACCGGGGAGAACCTGTGTCTGCAGAGGGCTGTCATGAGCTATGAGTCCAG
i papAnu2.chr13                C 0 I 50565
s chlSab2.chr14                90924592 254 - 107702431 tgtgttcttggctgagaggaggagtttatgcagttggctagagagcatatagtgtcatttgtggttcacaCACCTATGTCCAGGGAAGAGGGACTCACACAGGAGGGCTTGCACAGAACCTGGCTTGCAGGGCTGCTT--ACAGACCTGCTCTGTCTCCTGTTGACATGCACAAGGAATGACACAGCCAATGACTACCTTCAGCCATCCGAGGAGAACCTGTGTCTGCAGAGGGCTGTCATGAGCTATGAGTCCAG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90639934 241 - 108792865 tat-ttcttggctcagaggagaagttcatttagttggctagagagcttatagtttcatttttggtttgcaTACCTATATCCAGGTAAGAAGGACCCACTCAGGAGAGCTTGTGGAGAACCTGGTTTGCAGGGCTGCTT--ACAGACCTGCTCTGCCTCCTGTTGTCATGCACGAGAAAAGACA------------ACCCTCAGCCATCTGGGGAGAAGCTGCATCTACAGAGGACAGTCATGACTTGTGAGTCTAG
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=644913.000000
s hg38.chr14_KI270725v1_random    92365 296 +    172810 AGACCTGTGATTGTCTTCAGGGGCCTGTGGTCCTCGGCTTTCATAGGAGTTGTGGGGGCACTGGCTCAAATAGCATCCACCAGGATTCTAATCAGAATATCTCATTCACAGAAGGCAGTGGGTGATATGACAGTACAGAGGGACTCTGTGGGGCCAGCTGCATGGAGCACTCTGGGAGAGTCACTGGCACCCGTGCTAGACAGATCTTCATTCAACTTCTGGAGCACACGGATTTAGATCTCTTTACATCATTTTGAAACACCATTTATCATTCTGAAGGAAACCACTGTAATTAA
s panTro4.chrUn_GL393527         168184 296 +    341619 AGACCTGTGATTGTCTTCAGGGTCCTGCGGTCCTCGGCTTTCATAGGAGTTGTGGGGGCACTGGCTCAAATAGCATCCACCAGGATTCTAATCAGAATATCTCATTCACAGAAGGCAGTGGGTGATATGACAGCACAGAGGGACTCTGTGGGGCCAGCTGCATGGAGCACTCTGGGAGAGTCACTGGCACCCATGCTAGACAGAGCTTCATTCAACTTCTGGAGCACACGGATTTAGATCTCTTTACATCATTTTGAAAGACCATTTATCATTCTGAAGGAAGCCACTGTAATTAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2101942 296 +  72422247 AGACCTGTGATTGTCTTCAGGGGCCTGTAGTCCTCAGCTTTCATAGGAGTTGCGTGGGCACTGGCTCAAATAGCATCCACCAGGATTCTAATCAGAATATCTCATTCACAGAAGGCAGTGGGTGATATGACAGCACAGAGGGACTCTGTGGGGCCAGCTGCATGGAGCACTCTGGGAGAGTCACTGGCACCCGTGCTAGACAGAGCTTCATGCAACTTCTGGAGCACACAGATTTAGATCTCTTTACATCATTTTGAAAGACCATTTATCATTCTGAAGGAAATCACTGTAATTAA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38171 295 -     44534 AGACCTGTGATTGTCTTCAGGGGCCTGTGGTCCTCAGCTTTCATGGGAGTTGTGTGGGCGCTGGCTCAAAGAGTATCCACCAGGATATTAATCAGAATATCTCATTCACAGAAGGCAGTGGGTGATACGACAGCACAGAGGGACTCTCTGGGGCCAGTTGCATGGAGCACTCTGGGAGAGTCACTGGCACTCATGCTAGATAGAGCTTCATGCAACTTCTGAAGAACATGGATTTGGATCTCTTTACATCATTTTGAAAGACCATTTATCATACTGAAGGAAACCACTGT-ATTAA
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61763031 296 -  96509753 CTAACTGTGATTGTCTTCAGGGGCCTGTGGTCCTCAGCTTTCATGGGATTTGTGTGGAAACTGGCTCAAAGAGCATCCACCGGGATTCTTATCAGAATATCTCATTCACAGAAGGCGGTGGGTGATACGACAGCACAGAGGGACTCTGTGGGGCCAGATGCATGGAGCACTCCAGGAGAGTCACTGGCACCTGGGCTAGACAGAGCTTCTTGCAACTTCTGAAGCACACGGATTCGGATCTCTTAACATCATTTTGAAGGACTATTTATTATTCAGAAGGCAGCCATTGTAATTAA
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23421231 296 - 128036923 AGACCTGTGATTGTCTTCAGGGGCCTGTGGTCCTCAGCTTTCATGGGAGTTGTGTGGGCGCTGGCTCAAAGAGTATCCACCAGGATATTAATCAGAATATCTCATTCACAGAAGGCAGTGGGTGATATGACAGCACAGAGGGACTCTCTGGGGCCAGTTGCATGGAGCACTCTGGGAGAGTCACTGGCACTCATGCTAGATAGAGCTTCATGCAACTTCTGAAGAACATGGATTTGGATCTCTTTACATCATTTTGAAAGACCATTTATCATACTGAAGGAAACCACTGTAATTAA
i papAnu2.chr13                I 50565 C 0
s chlSab2.chr14                90924846 295 - 107702431 CTAACTGTGATTGTCTTCAGAGGCCTACGGTCCTCAGCTTTCATGCGAGTTGTGTTGGAACGGGCTCAAAGAGCAGCCACCAGGATTCTTATGAGAATATCTCATTCACAGAAGGCGGTGGGTGATATGACAGCACAGAGGGACTCTGTGGGGCCAGCTGCATGGAGCACTCTGGGAGAGTCACTGGCACCCGGGCTAGACAGAGCTTCTTGC-ACTTCTGAAGCACACGGATTCGGATCTCTTAACATCATTTTGAAGGACTATTTATTATTCAGAAGGCAGCCATTGTAATTAA
i chlSab2.chr14                C 0 T 61899
s calJac3.chr14                90640175 293 - 108792865 AGACCTGTGTATGTCTTCAGGGGCCTCTAGTCCTTAGCTTTCATGGGAGTTGTGTGGGTGCTGGCTCAAATAGCATCCACCAGGATTTTTAGTAGAATATCTCATTCACAGAAGGCAGTGGGTGACATGACAGCACAGAGGGACTC--TGGGTCCAGCTGCATGGAGCATTCTTGGAGAGACACTGGCACCCATGCTAGATGGAGCTTCAGGCAACTTCTGAATCACATGGATTTGGATCTCTTAACATAGTTTTGAAAGTCCATTTATCATTCTGAA-GCAACCACTGTAATTAA
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=54900.000000
s hg38.chr14_KI270725v1_random    92661 32 +    172810 CTAAGGTAACATCTTTAATAGGTAGAAAGAAA
s panTro4.chrUn_GL393527         168480 32 +    341619 CTAAGGTAACATCTTTAATAGGTAGAAAGAAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2102238 32 +  72422247 CTAAGGTAACATCTTTAATAGGTAGAAAGAAA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38466 32 -     44534 CTAAGGTAACATCTTTAATAGGTAGAAAGAAA
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61763327 32 -  96509753 CTATGATAACTTATGTAATAACTAGGAAGGAA
i macFas5.chr10                C 0 I 310
s papAnu2.chr13                23421527 32 - 128036923 CTAAGGTAACATCTTTAATAGGTAGAAACAAA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90863242 32 - 107702431 CTAAGATAACATATTTGATAGCTAAGAATAAA
i chlSab2.chr14                T 61899 C 0
s calJac3.chr14                90640468 31 - 108792865 CTAAGATAATATCTTTAGTAGCTGTGAATAA-
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=55036.000000
s hg38.chr14_KI270725v1_random    92693 41 +    172810 AAAGTGA-TTATTTTATTGCCAAGATGATTACAAGAAA----AGAA
s panTro4.chrUn_GL393527         168512 41 +    341619 AAACTGA-TTATTTTATTGCCAAGATGATTACAAGAAA----AGAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2102270 41 +  72422247 AAAGTGA-TTATTTTATTGCCAAGATGATTACAAGAAA----AGAA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38498 38 -     44534 AAGGTGATTTATTTTATTGCCAAGATGATAACAAGAAA--------
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61763669 36 -  96509753 aaaGTAA--TATTTTATTGCTAAGACGATTACAAGATA--------
i macFas5.chr10                I 310 C 0
s papAnu2.chr13                23421559 38 - 128036923 AAGGTGATTTATTTTGTTGCCAGGAtgataacaagaaa--------
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90863274 41 - 107702431 AAAGTGA-TTATTTTATTGCTAGTGGTTTTACTAGAAAACAA----
i chlSab2.chr14                C 0 I 62206
s calJac3.chr14                90640499 37 - 108792865 AAAGTGA-TTATTTTATTGCTAAGATTATTACAAGGAA--------
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=418369.000000
s hg38.chr14_KI270725v1_random    92734 195 +    172810 ACAAACAAAAATAGCATGAAGG-AAAGAGCAACACTAGACTGAGGGCTTTGGGTAAGAGGTTGAGACTTAGTAGTGAATGCCCTGGGCCATCTTCTGTCAAAAGGGAGGGACAATCAGCTAAGGGAAATATGCAGTAGAGGCAAAATCTTGGTTAGT-AAAGAATCCTAAGAGAAAACAAGAAGTCTCCTTCCTGAG
s panTro4.chrUn_GL393527         168553 196 +    341619 ACAAACAAAAATAGCATGAAGG-AAAGAGCAACACTAGACTGAGGGCTTTGGGTAAGAGGTTGAGACTTAGTAGTGAATGCCCTGGGCCATCTTCTGTCAAAAGGGAGGGACAATCAGCAAAGGGAAATATGCAGTAGAGGCAAAATCTTGGTTAGTAAAAGAATCCTAAGAGAAAACAAGAAGTCTCCTTCCTGAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2102311 196 +  72422247 ACAAACAAAAATAGCATGAAGG-AAAGAGCAACACTAGACTGAGGGCTTTGGGTAAGAGGTTGAGACTTAGTAGTGAATCCCCTGGGCCATCTTCTGTCAAAAGGGAGGGACAATCAGCAAAGGGAAATATGCAGTAGAGGCAAAATCTTGGTTAGTAAAAGAATCCTAAGAGAAAACAAGAAGTCTCCTTCCTGAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38536 196 -     44534 ACAAACAAAAATAACAAGAAGGAAAAGAGCAACCCTAGACTCAGGGCTTTGGGTAAGAGGTGGAGACTCAGTAGTGAATCCCCTGGGCCATCTTCTGTCAATAGAGAGGGACAATCAGGAAACGGAAAAGTGCAGTAGAGGCAAAATCTTCATTAGTAAAAGAATCCTAAGAGAAAACAAG-AGTCTGCTTCCTGAG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61763705 196 -  96509753 ACAAACAAAAATAGCATGAAGGAAAAGAGCAACCCTAGACTGAGGGCTTTGGGTAAGAGCTTGAGACTTAGTAGTGAATCCCCTGGGCCATCTTCTGTCAATAGAGAGGGACAATCAGGAAAGAGAAATGTGCAGTAGAGGCAAAATCTTGGTGAGCAAAAGAATCCTAACAGGAAGCAAC-AGTCTCCTTCCTGAG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23421597 195 - 128036923 acaaacaaaaataacaagacGGAAAAGAGCAACCCTAGACTCAGGGCTTTGGGTAAGAGGTGGAGACTCAGTAGTGAATCCCCTGGGCCATC-TCTGTCAATAGAGAGGGACAATCAGGAAAGGGAAAAGTGCAATAGAGGCAAAATCTTCATTAGTAAAAGAATCCTAAGAGAAAACAAG-AGTCTCCTTCCTGAG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90925521 196 - 107702431 ACAAACAAAAATAGCATGAAGGAAAAGAGCAACCCTAGACTGAGGGCTTTGGGTAAGAACTTGAGACTTAGTAGTGAATCCCCTGGGCCATCTTCTGTCAATAGAGAGGGACAATCAGGAAAGGGAAATGTGCAGTAGAGGCAAAATCTTGGTTAGTAAAAGAATCCTAACAGGAAGCAAC-AGTCTCTTTCCTGAG
i chlSab2.chr14                I 62206 C 0
s calJac3.chr14                90640536 194 - 108792865 ACAAACAAAAATAGCATGAAGGAAAAGAGCAACACTAAACTGAGGGCTTTGGGTAAGAGTTTGTGACTCAGTAGTGAAGTGCCTGGACCATCTTCTGTCAGAAAAGAGGAAAAATCAGGAAACAGAAATGTGCAGGAGAGGCAAAATCTTGCTTAGTAAAAAAATCTTAAGAGAAAAGA---AGTCTCCTTCCTGAG
i calJac3.chr14                C 0 I 558
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=40277.000000
s hg38.chr14_KI270725v1_random    92929 17 +    172810 CATCATGTTGGTGTCGG
s panTro4.chrUn_GL393527         168749 17 +    341619 CATCATGTTGGTGTCGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2102507 17 +  72422247 CATCATGTTGGTGTCGG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38732 17 -     44534 CACCATGTTGGTGTCAG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61763901 17 -  96509753 CATCATGTTGGTGTTGG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23421792 17 - 128036923 CATCATGTTGGTGTCAG
i papAnu2.chr13                C 0 T 50287
s chlSab2.chr14                90925717 17 - 107702431 CATCATGTTGGTGTGGG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90641288 17 - 108792865 CATCATGTTGGTGTTGG
i calJac3.chr14                I 558 C 0
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=121810.000000
s hg38.chr14_KI270725v1_random    92946 58 +    172810 GAAGATGCACATAATCCCCCGATTGCATGTCTTACACTTTTCAGCAATTAGTGC-TCAG
s panTro4.chrUn_GL393527         168766 58 +    341619 GAAGATGCACATAATCCCCCCATTGCATGTCTTACACTTTTCAGCAATTAGGGC-TCAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2102524 58 +  72422247 GAAGATGTACATAATCCCCCCATTCCATGTCTTATACTTTTCAGCAATTAGGGC-TCAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38749 58 -     44534 GAAGATGCACATAATCCCTACATTCCAGGTCTTACACTTTTCAGCAATTAGGCC-TCAG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61763918 58 -  96509753 GAAGATGCACATAATCCCCACATTCCAGGTCATACACTTTTCAGCAATTCAGGC-TCAG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23371522 58 - 128036923 GAAGATGCACATAATCCCCACATTCCATGTCTTACACTTTTCAGCAATTCAGGC-TCAG
i papAnu2.chr13                T 50287 C 0
s chlSab2.chr14                90925734 58 - 107702431 GAAGATGCACATAATCCCCACATTCCATGTCTTACACTTTTCAGCAATTCAGGC-TCAG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90641305 58 - 108792865 GAAGATGCATATAGTTCCC-TATTTCATGTCTTACACTTTTCAGCAATTAGGGCTTCAG
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=1757.000000
s hg38.chr14_KI270725v1_random       93004 1 +    172810 C
s panTro4.chrUn_GL393527            168824 1 +    341619 C
i panTro4.chrUn_GL393527          C 0 C 0
s ponAbe2.chrUn                    2102582 1 +  72422247 C
i ponAbe2.chrUn                   C 0 C 0
s rheMac3.chrUn_JH290316             38807 1 -     44534 T
i rheMac3.chrUn_JH290316          C 0 C 0
s macFas5.chr10                   61763976 1 -  96509753 C
i macFas5.chr10                   C 0 C 0
s papAnu2.chr13                   23371580 1 - 128036923 C
i papAnu2.chr13                   C 0 C 0
s chlSab2.chr14                   90925792 1 - 107702431 C
i chlSab2.chr14                   C 0 C 0
s calJac3.chr14                   90641363 1 - 108792865 T
i calJac3.chr14                   C 0 C 0
s tupBel1.scaffold_123687.1-62981    60489 1 +     62981 c
i tupBel1.scaffold_123687.1-62981 N 0 N 0
e gorGor3.chr9                    49359749 1454 + 121947112 I
e tarSyr2.KE938805v1                  8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2           74186 0 +    112108 I

a score=211567.000000
s hg38.chr14_KI270725v1_random    93005 88 +    172810 ATGAATTTAGAAGACACCATTCACTTCACAGCACGTGGGGACACAGTCAAGGCAGCGCTGAGAGGCAAGGCTGGGCTTTCAGTCTCAG
s panTro4.chrUn_GL393527         168825 88 +    341619 ATGAATTTAGAAGACACCATTCACTTCACAGCAGATGGGGACACAGTCAAGGCAGCGGTGAGAGGCAAGGCTGGGCTTTCAGTCTCAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2102583 88 +  72422247 ATGAATTTAGAAGACACCATTCACTTCACAGCAGATGGGGACACAGTCAAGGCAGCGGTGAGAGGCAAGGCTGGGCTTTCAGTCTCAG
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38808 88 -     44534 ATGAATTTAGAAGACACCATTCACTTCACAGCAGATGGGGACACAGTCAAGGCAGCGGTGAGAGGCAAGGCTGGGCTTTCAGTCTCAG
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61763977 88 -  96509753 ATGAATTTAGAAGGCACCATTCACTTCACAGCAGATGGGCACACAGTCAAGGCAGCGGTGAGAGGCAAGGCTGGGCTTTCAGTCTCAG
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23371581 88 - 128036923 ATGAATTTAGAAGACACCATTCACTTCACAGCAGATGAGGACAGAGTCAAGGCAGCGGTGAGAGGCAAGGCTGGGCTTTCAGTCTCAG
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90925793 88 - 107702431 ATGAATTTAGAAGACAGCTTTGACTTCACAGCAGATgaggacagagtcaaggcagaggtgagaggcaaggcTGGGCTTTCAGTCTCAG
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90641364 88 - 108792865 ACGAATTTAGAAGACACCATTCACTTCACAGCAGATGGCGACACAGTCAAGGCAGTGGTGATATGCAAGGCTGAGCTTTCAGTCTCAG
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1               8681 5628 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=17767.000000
s hg38.chr14_KI270725v1_random    93093 6 +    172810 CGCACA
s panTro4.chrUn_GL393527         168913 6 +    341619 AGCACA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2102671 6 +  72422247 AGCACA
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38896 6 -     44534 AGCACA
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61764065 6 -  96509753 AGCACA
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23371669 6 - 128036923 AGCACA
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90925881 6 - 107702431 AGCACA
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90641452 6 - 108792865 AGCACA
i calJac3.chr14                C 0 C 0
s tarSyr2.KE938805v1              14309 6 +    186790 CGCACA
i tarSyr2.KE938805v1           I 5628 I 587
e gorGor3.chr9                 49359749 1454 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=898442.000000
s hg38.chr14_KI270725v1_random    93099 461 +    172810 GAGCAGGTTCCCCACTACTCCGCACCCTGGTGTCTCCTC---------CCAGATGTTCCACCTCATTCTTGCCTTAAGGGCTCCAAGTTGTTAATGGGACAGTAGCCCTCTTCCTTTCCCAGGGTTTCTAAGAATTTGGCTCTCTTTTGTGTATTGTGGGGTTTGTTTGCCATCTAGAGGCAGC-TTTTTGGCATAGCAACTTACAGGCTTTTTCTACTTGTGATAGTGAaaataaatacataaataaattcatcataaataataaatTGACTTAATG-------CATTGAACCTGTAAAA----------AAAAAATAAGGTCAGTTTGAGAGCTTAAAAGGAGCCTGATGAGGTTGAAAAGACAAATTACCTTTAGTAAAGAGCAGTTGGAGCAATAGATGA-----TTCTTTAATCAAGGACATTTT-AAGAGTAATCATCAAATGGTAAATAA-AACTTGAAATAAGATGATA-AAATATAATCTTATATGC
s panTro4.chrUn_GL393527         168919 473 +    341619 GAGCAGGTTCCTCACTACTCCGCACACTGGTGTCTCCTCCCAGATGTTCCAGATGTTCCACCTCATTCTTGCCTTAAGGGCTCCAAGTTGTTAATGGGACAGTAGCCCTCTTCCTTTCCCAGGGTTTCTAAGAATTTGGCTCTCTTTTGTGTATTGTGGGGTTTGTTTGCCATCTAGAGGCAGG-TTGTTGGCATAGCAACTTATAGGCTTTTTCTACTTGTGATAGTGAAAATAAATACATAAATAAATTCATCATAAATAATAAATTGACTTAATG-------AATTTAATCTGT-AAA----------AAAAAATAAGGTCAGTTTGAGAGcttaaaaggagcctgatgaggttaaaaagacaaatttcctttagtaaagagcagttggagcaatagatga-ttctttctttaatcaatgacatttt-aggagtaattatcaaatggtaaataa-aacttgaaataagctgata-aaatataattttatatgg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2102677 474 +  72422247 GAGCAGGTTCCCCACTACTCCGCACCCTGGTGTCTCCTCCCAGATGTTCCAGATGTTCCACCTCATTCTTGCCTTAAGGGCTCCAAGTTGTTAATGGGACAGTAGCCCTCTTCCTTTCCCAGGATTTCTAAGAACTTGGCTCTCTTTTGTGTATTGTGGGGTTTGTTTGCCATCTAAAGGCAGG-TTTTTGGCATAGCAACTTATAGGCTTTTTCTACTTGTGATAGCGAAAATAAATACATAAATAAATTCATCATAAATAATAAATTGACTTAATG-------CATTGAATCTGTAAAA----------ACACAATAAGGTCAGTTTAAGAGCTTAAAAGAAGCCTGATGAGGTTAAAAAGACAAATGACTTTTAGTAAAGGACAGTTGGAGCAAAAGATGA-TTCTTTCTTTAATCGATGACATTTT-AGGAGTAATTATCAAATGGTAAATAA-AACTTGaaataagctgatg-aaatataattttatatgc
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          38902 468 -     44534 GAGCAGGTTCCCCACTCCTCCGCAGCCTGGTGTCTCCTCTCAGATGTTCCAGATGTTCCACCTCATTCTCGCCTTAAGGGCTCCAACTTGTTAATGGGACTGTAGCCCTCTTCCTTTCCCAGGGTGTCTAAGAACTTGGCTGTCTTTTGTGTATTGTGGGGTTTGCTTGCCATCTAGAGGCAGGTTTTTTGGCATAACAGTTTATAGGCTTTTTCTACTTGTGATATCG-AAATAATTACATAAATAAATGTATCATAAGTAATA----GACTTAACA-------TATCAAATCAGTAAAC---------AAAAAAATAAGATGAGTTTCAGAGCTTAAAAGGAATCTGATGAGGTTAAATAGAGAAATTACTTTAAGTGGAGGA----CAGAGCAACAGATTA-TTATTTTTTAAATCGATGACATTTT-GGGAGTAATTATCATATGCTAAATAATAACTTGAAATAAGCTTCta-aaatataattttataatc
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61764071 480 -  96509753 GAGCAGGTTCCCCACTACTCCACAGCCTGCTGTCTCCTCTCAGATGTTCCAGATGTTCCAACTCATTCTTGCCTTAAGAGCTCCAATTTGTTAATGGGACAGTAGCCCTCTTCCTTTCCCAGGGTGTCTAAGAACTTGGCTGTCTTTTGTGTATTGTGGGGTTTGTTTGTCAT-TAGAGGCAGG-TTTTTGGTATAGCAACTTACTGGCTTTTTCTACTTGTGATATCGAaaataattacataaataaatttgccataaataataaattgacttaatg-------tatcaaatcagtaaaa------aagaaaaaaaaaaGATGAGTTTCAGAGCTTAAAAGGAGTCTGATAAGGTTAAATAGAGAAATTACTTTCAGTGGAGGATAGTTAGAGCAACAGATGATTTTTTTTTTTAATCAATGACATTTTGGGGAGTAATTATCATATCGTAAATAACAACTTGAAATAAGATGCTA-AAATATAATTTTATAATC
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23371675 483 - 128036923 GAGCAGGTTCCTCACTACTCCGCAGCCTGCTGTCTCCTCTCAGATGTTCCAGATGTTCCACCTCATTCTTGCCTTAAGGGCTCCAAGTTGTTAATGGGACACTGGCCCTCTTCTTTTCCTAGGGTGTCTAAGAACTTGGCTGTCTTTTGTGTATTGTGGGGTTTGTTTGTCATCTAGAGGCAGG-TTTTTGGTATAGCAACTTACGGGCTTTTTCTACTTGTGATATcgaaaataattacataaataaatttgcCATAAATAATAAATTGACTTAATG-------TAtcaaatcagtaaaa---aaaaaaaaaaaaaaaagatgagtttcaGAGCTTAAAAGGAGTCTGATGAGGTTAAATAGAGAAATTACTTTCAGTGGAGGATAGTTAGAGcaacagatga-ttttttttttagtcaatgACATTTTGGGGAGTAATTATCATATTGTAAATAACAACTTGAAATAAGctgcta-aaatataattttataatc
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90925887 493 - 107702431 GAGCAGGTTCCCCACTGCTCGGCAGCCTGGTGTCTCCTCTCAGATGTTCCAGATGTTCCACCTCATTCTTGCCTTAAGGGCTCCAAGTTATTAATGGGATAGTAGCCCTCTTCCTTTCCCAGGGTGTCTAAGAGCTTGGCTGTCTTTTGTATATTGTGGGGTTTGTTTGTCATCTAGGGGCAGG-TTTTTGGTATAGCAACTTATGGGCTTTTTCTACTTGTGATATCGAAAATAATTACATAAATAAATTTGCCATAAATAACAAATTGACTTAATGTATCAAATATCAAATCAGTaaaaaaaaaaaaaaaaaaaaaaaGATGAGTTTCAGAGCTTAAAAGGAGTCTGATGAGGTTAAATAGAGAATTTACTTTCAGTGGAGGATAGTTAGAGCAACAGATGA-TTTTTTTTTTAATCAATGACATTTTGGGGAGTAATTATCATATCGTAAATAACAACTTGAAATAAGCTGCTA-AAATATAATTTTATAATC
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90641458 452 - 108792865 GAGCAGCTTCCCCACAACTCCACACACTGGTGGCTCCTCCCAGATGTTCCAGTTGTTGCACGCCATTCTTGCCTTAGTAGCTCCAAGATGATAATGCCACACTAGCCCTC-TCCTTTCCCAGGGTTTCTAAGAACTTAGCACTC--TTGTGTATTAGGGGATTTGTTTGCCATGTAAAGGCAGA-TCTTTGACATAGCCATTTATGGGA--TTTCTACTTCTGATAGAAAAAGTAAATACATAAATAAA-----------TAATAAATTGACTTAATA-------TATCGAATCTATAAAG----------------AAAGCTCAGTTTAAGAGCTTAAAAGGAGTCTGCAGAGGTTAAAAAGACAAATTATTTTCAGTGAAGGACAGTTAGTGCAACAGATGG---CTTTTTTAAAAAATCAACATTTT-AGGAGTAATTATCAAACAGTAAATAACAACTTGAAATAAGCTGCTATACATATAATCTTATAGTC
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49359749 1454 + 121947112 I
e tarSyr2.KE938805v1              14315 587 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=3276.000000
s hg38.chr14_KI270725v1_random    93560 1 +    172810 A
s panTro4.chrUn_GL393527         169392 1 +    341619 a
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                 49361203 1 + 121947112 A
i gorGor3.chr9                 I 1454 n 1454
s ponAbe2.chrUn                 2103151 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          39370 1 -     44534 a
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61764551 1 -  96509753 A
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23372158 1 - 128036923 a
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90926380 1 - 107702431 A
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90641910 1 - 108792865 A
i calJac3.chr14                C 0 C 0
e tarSyr2.KE938805v1              14315 587 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=346447.000000
s hg38.chr14_KI270725v1_random    93561 174 +    172810 AAAAAA-ATTTCCAAGAACCAGAGAAATACATTTTCAGATTAAAACAAAC--AAAAAATGTGGGTTTATCATCAGATCCGCTAAATGGAAGATTCCTCAAATGTGTGCTTGGAGCAAAAATAACACTTATCCCTATTTGAAAGTTCAAGA-TTTTTGAGCTTTAGAAGAAAACAGTTT
s panTro4.chrUn_GL393527         169393 171 +    341619 aaaaaatatttccaagaaccatacaaatacattttcagatta----aaac--aaaaaatgtgggtttatcatcagATCCGCTAAATGGAAGATTTCTCAAATGTATGCTTGGAGCAAAAATAACACTTATCGCTATTTGAAAGTTCAAGA-TTTTTGAGCTCTAGAAGAAAACAGCTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2103152 176 +  72422247 -aaaaatatttccaagaatcatacaaatacattttcagattaaaacaaacaaaaaaaatgtgggtttatcatcagatccgctaaatggaagatttctcaaatgtgtgcttggagcaaaaacaacatttatctctatttgaaagttcaaga-tTTTTGAGCTTTAGAAGAAAACAGCTT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          39371 175 -     44534 aaaaattatttCCAAGGATCATATAAATACATTTTCAGATTAAAGCATAC--AAAAAATGTGGGTTTATCATCAGGTGCACTCAATGGAAGATTTCTCAGATGTGTACTTGGAGCAAAAATAACATTTATTTCTATTTGCAAGTTCAAGA-TTTTTGATCTTTGGAAGAAAACAACTT
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61764552 173 -  96509753 AAAAATTATTTCCAAGTATCACATAAATACATTTTCCGATTAAAAC--AC--AAAGAATGTGGGTTTATCATCAGGTCCATCCAATGGAAGACTTCTCAAATGTGTACTTGGAGCAAAAATTACATTTACTTCTATTTGCAAGTTCAAGA-TTTTTGATCTTTGGAAGAAAACAACTT
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23372159 175 - 128036923 aaaaattatttccaagtatcacataaatacattttcctattacaacacac--aaaaaatgtggGTTTATCATCAGGTCCATCCAATGGAAGACTTCTCAAATGTGTACTTGGAGCAAAAATTGCATTTACTTCTATTTGCAAGTTCAAGA-TTTTTGATCTTTAGAAGAAAACAACAT
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90926381 175 - 107702431 AAAAATTATTTCCAAGTATCACATAAATACATTTTCCTATTAAAACACAC--AAAAATTGTGGGTTTATCATCAGGTCCATCCAATGGAAGACTTCTCAAATGTGTACTTGGAGCAAAAATTTTATTTACTTCTATTCGCAAGTTCAAGA-TTTTTGATCTTTAGAAGAAAACAACAT
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90641911 176 - 108792865 AAAATTTATTTCCAAGAATCCTATAAATACATTTTCAGGTTAAAACAAAC--AAAATATGTGGGTTTATCATCAGATCAGCTCAATGGAAGGTTTTTCAAATGTGTGCTTGAGGCAAAAAGAACATTTATCTCTATTTGAAAGTTCAAGCTTTTTTGATCTGTAGAAGAAAACAGCTT
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49361204 1454 + 121947112 I
e tarSyr2.KE938805v1              14315 587 +    186790 I
e nomLeu3.chrUn_GL397743_2        74186   0 +    112108 I

a score=-1132.000000
s hg38.chr14_KI270725v1_random    93735 1 +    172810 -T
s panTro4.chrUn_GL393527         169564 1 +    341619 -T
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2103328 1 +  72422247 -T
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          39546 1 -     44534 -T
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61764725 1 -  96509753 -T
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23372334 1 - 128036923 -T
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90926556 1 - 107702431 -T
i chlSab2.chr14                C 0 C 0
s calJac3.chr14                90642087 1 - 108792865 -T
i calJac3.chr14                C 0 C 0
s tarSyr2.KE938805v1              14902 1 +    186790 G-
i tarSyr2.KE938805v1           I 587 N 0
e gorGor3.chr9                 49361204 1454 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=83265.000000
s hg38.chr14_KI270725v1_random    93736 35 +    172810 CCCTTCACTCTGTTCCACTCAATGCTTCTGAGGAT
s panTro4.chrUn_GL393527         169565 34 +    341619 CCCTTCCCTCTGTTCCACTC-ACGCTTCTGAGGAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2103329 34 +  72422247 CCTTTCACTCTGTTCCACTC-ATGCTTCTGAGGAT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          39547 34 -     44534 CCCTTCACTCTGTTCCACTC-ATGCTTCTGAGGAT
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61764726 34 -  96509753 CCCTTCACTCTGTTCCACTC-ATGCTTCTGAGGAT
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23372335 34 - 128036923 CCCTTCACTCTGTTCCACTC-ATGCTTCTGAGGAT
i papAnu2.chr13                C 0 C 0
s chlSab2.chr14                90926557 34 - 107702431 CCCTTCACTCTGTTCCACTC-ATGCTTCTGAGGAT
i chlSab2.chr14                C 0 N 0
s calJac3.chr14                90642088 34 - 108792865 CCCTTCACTCTGTTCCACTC-ATGCTGCTGAGGAT
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49361204 1454 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186  0 +    112108 I

a score=6350.000000
s hg38.chr14_KI270725v1_random    93771 6 +    172810 GGCCAT
s panTro4.chrUn_GL393527         169599 6 +    341619 CGCCAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 2103363 6 +  72422247 GGCCAT
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chrUn_JH290316          39581 6 -     44534 GGCCGT
i rheMac3.chrUn_JH290316       C 0 C 0
s macFas5.chr10                61764760 6 -  96509753 GGCCGT
i macFas5.chr10                C 0 C 0
s papAnu2.chr13                23372369 6 - 128036923 GGGCGT
i papAnu2.chr13                C 0 C 0
s calJac3.chr14                90642122 6 - 108792865 GGATGT
i calJac3.chr14                C 0 C 0
e gorGor3.chr9                 49361204 1454 + 121947112 I
e nomLeu3.chrUn_GL397743_2        74186 0 +    112108 I

a score=11200.000000
s hg38.chr14_KI270725v1_random     93777 4 +    172810 GGGG
s panTro4.chrUn_GL393527          169605 4 +    341619 GGGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  2103369 4 +  72422247 GGGG
i ponAbe2.chrUn                C 0 N 0
s nomLeu3.chr7b                114532168 4 + 115148730 GGGG
i nomLeu3.chr7b                I 44409 C 0
s rheMac3.chrUn_JH290316           39587 4 -     44534 GGGG
i rheMac3.chrUn_JH290316       C 0 N 0
s macFas5.chr10                 61764766 4 -  96509753 GGGG
i macFas5.chr10                C 0 N 0
s papAnu2.chr13                 23372375 4 - 128036923 GGGG
i papAnu2.chr13                C 0 N 0
s calJac3.chr14                 90642128 4 - 108792865 GGGG
i calJac3.chr14                C 0 N 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=11530.000000
s hg38.chr14_KI270725v1_random     93781 124 +    172810 CAAAAAGCGGCGTCGGCG------------GGGGGGGGCAAAAAGCCGGGGC-----GGGCAAAAAGCCGCGGC--------GCCAAAAAGCCGCGGCGGC----------------------------GAGGGAGGGAAAAGCC-----------GCGGCGGCGGGCGGCAAAAAGCCGCGACGTCG
s panTro4.chrUn_GL393527          169609 118 +    341619 CAAAAAGCCGCGGCGGT--------------TGGGGTGCAAAAAGCCGCGGC-----GCTCAAAAAGCCGCGGCAGCAGGGGGGCAAAAAGCCGCGGCGAC------------------------------------AAAAAGCC-----------GCGGCGGCGGGGGGGGGAAAGCCGTGGC----
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr7b                114532172 186 + 115148730 CAAAAAGCCGCGGCGTTAAAAAGCCATGGCGGCGGGCGTAAAAAGACCTGGTCGCGGGGGCAAAAAGCTGCGGCTGCAGG--GCCAAATAGCCACGGCTGCGGGGGGAAAAAGCGGCAAAAAGACAGGTGGGGGGGCAAAAAGCCACTAAAAGCAAGCGGCGGCGAGGGGCAAAAAGCCGCGGCGGCA
i nomLeu3.chr7b                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=10346.000000
s hg38.chr14_KI270725v1_random     93905 27 +    172810 GGGGGCAAAAAGCCGCGGCAGCGGGGG
s panTro4.chrUn_GL393527          169727 25 +    341619 --GGGCAAAAAGCCACGGCGCCTGGGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5665085 25 +  72422247 GGGGGCAAAAAGCCGCGGCGGC--GGG
i ponAbe2.chrUn                N 0 C 0
s nomLeu3.chr7b                114532358 27 + 115148730 GAGGGCAAAAAGCCATGGCAGCGGGGG
i nomLeu3.chr7b                C 0 N 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=3310.000000
s hg38.chr14_KI270725v1_random    93932 13 +    172810 TGCAAAAAGCCGC
s panTro4.chrUn_GL393527         169752 13 +    341619 TGCAAAAAGCCGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 5665110 13 +  72422247 AGCAAAAAGCCGC
i ponAbe2.chrUn                C 0 I 290
e gorGor3.chr9                 49361204 1454 + 121947112 I

a score=7507.000000
s hg38.chr14_KI270725v1_random    93945 162 +    172810 GGCAGCGGGGGTGCAAAAAGCCGCGGCAGCGAGGGTGCAAAAAGCCGCGGCAGCGGGGGTGCAAAAAGCCGCGGCAGCGGGGGTGCAAAAAGCCGTGGCAGGGAGGGGCAAAAAGCCGTGGTGGGCAAAAAGCCGCGGCAGCGGGGGG--CGAAAAGCCGCGGC
s panTro4.chrUn_GL393527         169765 148 +    341619 GGCGGCGGGGGGGCAAAAAGCCGGGTCGG-------GCAAAAAGCCAGGGCG--------GCAAAAAGCCGCGGCGGCAGGGA-ACAAAAAGCCGCGGCGGCGGGGGGCAAAAACCCGCGGCGGGTATAAACCCGAGGCGGCGCGGGGGTCAAAAATCCGCGGT
i panTro4.chrUn_GL393527       C 0 C 0
e gorGor3.chr9                 49361204 1454 + 121947112 I
e ponAbe2.chrUn                 5665123 290 +  72422247 I

a score=3340.000000
s hg38.chr14_KI270725v1_random    94107 28 +    172810 GGGCAAGAAGCCGCGGCGGCAAAAAGCC
s panTro4.chrUn_GL393527         169913 18 +    341619 GAGGAAAAAACCGCGGTG----------
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 5665413 28 +  72422247 GGGCAAAAAGCCGCGGCGGCAAAAAGCC
i ponAbe2.chrUn                I 290 I 160
e gorGor3.chr9                 49361204 1454 + 121947112 I

a score=4855.000000
s hg38.chr14_KI270725v1_random    94135 153 +    172810 ACCGCGCGGGGAGGAAAAAGCCGTGGCGGGCAAAAATCCGCGGAAGCAAAAAGCCTCGGCGCGGAAAAGACCGCGGCGGCGGGGGTGCAAAAAGTCGCGCCTGGCAAAAAGCCGCAGCGGCGGGGGGAACAAGCCGCGGCGGGCAGAAAGGCT
s panTro4.chrUn_GL393527         169931 117 +    341619 -----GCGGGGGGCAAAAAGCCGCGGTGG----------------GGAAAAAGCCGCAGCGGGCAAAAAGCCGCGGCGGTGGGGGGCCAAAAAGCCGAAGTGCGCAAAAAGCCGCAGTGGTGGGG---------------GGGCAAAAAGCTG
i panTro4.chrUn_GL393527       C 0 C 0
e gorGor3.chr9                 49361204 1454 + 121947112 I
e ponAbe2.chrUn                 5665441 160 +  72422247 I

a score=6541.000000
s hg38.chr14_KI270725v1_random    94288 24 +    172810 CGGCGGCGGGGGGCAAAAAGCCGC
s panTro4.chrUn_GL393527         170048 24 +    341619 CGGCGGCGGAGGGCAAAAAGCCGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 5665601 24 +  72422247 CGGCGGCGGGGAGCAAAAAGCCGC
i ponAbe2.chrUn                I 160 I 176
e gorGor3.chr9                 49361204 1454 + 121947112 I

a score=1694.000000
s hg38.chr14_KI270725v1_random    94312 32 +    172810 GGTGGAGAGGGGGCAAAAATCCGCGACGACGC
s panTro4.chrUn_GL393527         170072 31 +    341619 GGT-GATGGGGGTCAAAAAGCCGCGGCGACGC
i panTro4.chrUn_GL393527       C 0 C 0
e gorGor3.chr9                 49361204 1454 + 121947112 I
e ponAbe2.chrUn                 5665625 176 +  72422247 I

a score=1500.000000
s hg38.chr14_KI270725v1_random    94344 5 +    172810 GGGGC
s panTro4.chrUn_GL393527         170103 5 +    341619 GGGGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                 5665801 5 +  72422247 ggggc
i ponAbe2.chrUn                I 176 C 0
e gorGor3.chr9                 49361204 1454 + 121947112 I

a score=25539.000000
s hg38.chr14_KI270725v1_random     94349 17 +    172810 AAAATAGTGGATCTGGT
s panTro4.chrUn_GL393527          170108 17 +    341619 AAAATAGTGGAGATGGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5665806 17 +  72422247 AAAATAGTGGAAATGGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44104821 17 -  99891981 AAAATAGTGGAAATGGA
i nomLeu3.chr17                N 0 C 0
s macFas5.chr3                 124981432 17 - 192294377 AAAATAGTGGAAACGGG
i macFas5.chr3                 N 0 C 0
s papAnu2.chr3                 122245411 17 - 180432695 AAAATAGTGGAAACGGG
i papAnu2.chr3                 N 0 C 0
s calJac3.chr8                  20041124 17 + 128169293 AAAATAGTGGAAAAAGG
i calJac3.chr8                 N 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=21026.000000
s hg38.chr14_KI270725v1_random     94366 11 +    172810 GTAGAAGGCCG
s panTro4.chrUn_GL393527          170125 11 +    341619 GTAGAAGGCCG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5665823 11 +  72422247 GTAGAAGGCCG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44104838 11 -  99891981 GTAGAAGGCCC
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124981449 11 - 192294377 GTAGAGAGCCT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122245428 11 - 180432695 GTAGAGAGCCT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121502371 11 - 127223203 GTAGAAAGCCT
i chlSab2.chr21                N 0 C 0
s calJac3.chr8                  20041141 11 + 128169293 GTAGAAGGACT
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=31968.000000
s hg38.chr14_KI270725v1_random     94377 11 +    172810 GCACAGCTTGG
s panTro4.chrUn_GL393527          170136 11 +    341619 GCACAGCTTGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5665834 11 +  72422247 GCACAGCTTGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44104849 10 -  99891981 GTA-AGCTTGG
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124530320 11 - 198365852 GCACAGCTTGG
i rheMac3.chr3                 N 0 C 0
s macFas5.chr3                 124981460 11 - 192294377 GCACAGCTTGG
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122245439 11 - 180432695 GCACAGTTTGG
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121502382 11 - 127223203 GCACAGCTTGG
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20041152 11 + 128169293 GCACAGCTTGG
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=89770.000000
s hg38.chr14_KI270725v1_random     94388 36 +    172810 CATTGCTGGAGTGTGATGAGATAGGAAATGTGCAGC
s panTro4.chrUn_GL393527          170147 24 +    341619 CTC--------TGTGATAGGA----AAATGTGCAGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5665845 36 +  72422247 CATTGCTGGAGTGTGAGGTGATAGGAAAAGTGCAGC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44104859 36 -  99891981 CATTGCTGGATTGTGATGTGGAAGGAAAAGTGCAGC
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124530331 36 - 198365852 CACTGCTGGAGTGTGATGTGGAAGGAAAAGTGCAGC
i rheMac3.chr3                 C 0 I 19
s macFas5.chr3                 124981471 36 - 192294377 CACTGCTGGAGTGTGATGTGGAAGGAAAAGTGCAGC
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122245450 36 - 180432695 CACTGCTGGAGTGTGATGTGGAAGGAAAAGTgcagc
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121502393 36 - 127223203 CACTGCCGGAGTGTGATGTGGAAGGAAAAGTGCAGC
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20041163 36 + 128169293 CATTGCTGGAGTGTGATGTGGAAGGAAAAGTGAAGC
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4067606 35 +  55844845 CATTCCTAGAATATGATATGGAAAGAGGGGTCTGG-
i canFam3.chr18                N 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=14071.000000
s hg38.chr14_KI270725v1_random     94424 7 +    172810 CAAAGAC
s panTro4.chrUn_GL393527          170171 7 +    341619 CAAAGAC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5665881 7 +  72422247 CGAAGAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44104895 7 -  99891981 AGAAGGC
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124981507 7 - 192294377 AGAAGAC
i macFas5.chr3                 C 0 I 9
s papAnu2.chr3                 122245486 7 - 180432695 agaagac
i papAnu2.chr3                 C 0 I 11
s chlSab2.chr21                121502429 7 - 127223203 AGAAGAC
i chlSab2.chr21                C 0 I 8
s calJac3.chr8                  20041199 7 + 128169293 GGAAGGC
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4067641 5 +  55844845 --GAGAC
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I
e rheMac3.chr3                 124530367 19 - 198365852 I

a score=258353.000000
s hg38.chr14_KI270725v1_random     94431 84 +    172810 AAAAAAAGATGTAAGTAGGCTTGA--CTCATTGCAGCTAAGAACCCAGA-TGTTATCTTGAGGGTTTTAACTAATAAGCAGTTTAAA
s panTro4.chrUn_GL393527          170178 84 +    341619 AAAAAAAGATGTAAGTAGGCTTGA--CTCATTGCAGCTAAGAACCCACA-TGTTATCTTGAGGGTATAAACTAATAAGCAGTTTAAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5665888 84 +  72422247 AAAAAAAGATGTAAGTAGACTTGA--CTCCGTGCAGCTAAGAACCCAGA-TGTTATCTTGAGGGTATTAACTAATAAGCAGTTTAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44104902 79 -  99891981 AAAAAAAGATGCAAGTAGGCTTTA--CTCAGTGCAGCTAAGAACCCAGA-TGTTATCTTGAGGGTGTTAACTAATAAGCAGC-----
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124530386 84 - 198365852 AAAAAAAGATGTAAGTAGGCTTGA--CTCAGCGCAGCTAAGAACCCAGA-TGTTATCTTGAGGGTGTTAACTAATAAGCAGTTTAAA
i rheMac3.chr3                 I 19 C 0
s macFas5.chr3                 124981523 84 - 192294377 AAAAAAAGATGTAAGTAGGCTTGA--CTCAGCGCAGCTAAGAACCCAGA-TGTTATCTTGAGGGTGTTAACTAATAAGCAGTTTAAA
i macFas5.chr3                 I 9 C 0
s papAnu2.chr3                 122245504 84 - 180432695 aaaaaaaaatgtaagcaggCTTGA--CTCAGTGCAGCTAAGAACCCAGA-TGTTATCTTGAGGGTGTTAACTAATAAGCAGTTTAAA
i papAnu2.chr3                 I 11 I 752
s chlSab2.chr21                121502444 84 - 127223203 aaaaaaaaaTGTAAGCAGGCTTGA--CTCAGTGCAGCTAAGAACCCAGA-TGTTATCTTGAGGATGTTCACTAATAAGCAGTTTAAA
i chlSab2.chr21                I 8 C 0
s calJac3.chr8                  20041206 82 + 128169293 -AGAAAAGATGTGAGCAGGCTTGA--CTCAGTGCAGCTAAGAAACCAGA-TGTTATTGTGAGGGTGTTAACTAATAA-CAGTTTAAA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4067646 83 +  55844845 TGAAAAAGATGCAGGTAAGCTTGAAGTATATGGCAGCTGAGAGCACAGATTTTTATCTTGAAGCCCTTGGCTAT----GAGTTTATA
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=370012.000000
s hg38.chr14_KI270725v1_random     94515 187 +    172810 TC---AGAATGGCACATTCTGATT--TTTTTTTATATGTTCAC--------------------------------ATTTG-------GCAG--GCATAGATA--CTGTTTGAAAAGAGAAAAGTCAGTAGATAGAGGTAACAAACTTAAATATGTGCCGAGTCTAGAAACAAGAGACTAG-----GGAGATAAGGACCTTTGGAAATAAAAT-------------------------------GAAAGATTTGAAAAC----TGGCTG-GGGGATG
s panTro4.chrUn_GL393527          170262 193 +    341619 TC---AGAATGGCACATTCTGATTTGTTTTTTTGTATGTTCAC--------------------------------ATTTG-------GCAG--GCATAGATA--CTGTTTGAAAAGAGAAAAGTCAGTAGATAGAGGTAACAAACTTAAATATGTGCCAAGTCTAGAAACAAGAGACTAG-----GGGGATAAGGACCTTTCGAAATAAAAT-------------------------------GCAAGATTTGAAAACTGATTGGCTG-GGGGATG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5665972 186 +  72422247 TC---AGAATGGCACATTCTGATTT-GTTTTTTGTATGTTCAC--------------------------------ATTTG-------GCAG--GCATAGATA--CTGTTTGAAGAGAGGAAAGTCAGTAGATA----TAACAAACTTAAATATGTGCCAAGTCTAGAAAC--GAGACTAG-----GGGGATAAGGACCTTTCCAAATAAAAT-------------------------------GCAAGATTTGAAAACTGATTGGCTG-GGGGATG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44104981 178 -  99891981 --------------CATTCTGATTT-GTTTTTTGTATGTTCAC--------------------------------ATTTG-------GCAG--GCATAGATA--CTGTTTGAC-CGAGGAAAGTCAGTAGATAGAGGTAACAAAGTTAGATATGTGCCAAGTCTAGAAACAAGAGACT-G-----GGGGATAATGA-CTTTCAAAATGAAAT-------------------------------GCAAGATTTGAAAACTGATTGGCTG-GAGAATG
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124530470 192 - 198365852 TC---AGAATGTCAGATTCTGATTT-GTTTTTCGTACGTTCAC--------------------------------ATTTG-------GCAG--GCATAGATA--CTGTTTGAAGAGAGGAAAGTCAGTAGATAGAGGTAACAAACTTAGATATGTGCCAAGTCTAGAAACAAGAGACTGG-----GGGGATAACGACCTTTCGAAATAAAAT-------------------------------GTAATATTTGAAAGATGATTGGCTG-GGGGATG
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124981607 192 - 192294377 TC---AGAATGTCAGATTCTGATTT-GTTTTTCGTACGTTCAC--------------------------------ATTTG-------GCAG--GCATAGATA--CTGTTTGAAGAGAGGAAAGTCAGTAGATAGAGGTAACAAACTTAGATATGTGCCAAGTCTAGAAACAAGAGACTGG-----GGGGATAACGACCTTTCGAAATAAAAT-------------------------------GTAATATTTGAAAGCTGATTGGCTG-GAGGATG
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121502528 192 - 127223203 TC---AGAATGTCAGATTCTGATTT-GTTTTCCGCACGTTCAC--------------------------------ATTTG-------GCAG--GCATAGATA--CCGTTTGAAGAGACGAAAGTCAGTAGATAGAGGTAACAAACTTAGATATGTGCCAAGTCTAGAAACAAGAGACTGG-----GGGGATAACGACCTTTCGAAATAAAAT-------------------------------GTAACATTTGAAAACTGATTGGCTG-GGGGATG
i chlSab2.chr21                C 0 I 49
s calJac3.chr8                  20041288 170 + 128169293 TC---AGAATG-----------TGC-CATTTCTGTATGTTCAC--------------------------------ATTTG-------GCAG--GCATAGATA--ATGTTTGAAGAGACGGAAGTCAGTAGATAGAATTAACAACGTCAG-TCTGTAGAAAGTCTAGAAGCAAGAGACTAA-----GGGGATAATAACCTTTCAAAATAAAAT-------------------------------GCAAGATTTGAAAACTGATTGG-----------
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4067729 274 +  55844845 TCGGGAGAATGACATATTCATATTT-GTTTTGTATACTCTTACTTAAGAGTAAGAgttaatttgttaatttgttaatttgttaatttgCAGATGTGTGGATAATATGTTTGAAGAGAGGAAGATCGGAAAGCAGGGGTAAT-ATTGTGGATACATGGAAAATCTGGAAACCAGAATCCAGCTGTCAGAAAAATAGGTACTTAGAGGTAAAATTaaaaaacaaaaaaaagaaacaaacaaaaaaaaaaGATTTGAAAATTAATTAGTTGAAGGGATG
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I
e papAnu2.chr3                 122245588 752 - 180432695 I

a score=147385.000000
s hg38.chr14_KI270725v1_random     94702 50 +    172810 AGGATAAGGCAGGTCTTTAGGGTCAATCCCTGTTTTGCTTTAAGTTGTTA
s panTro4.chrUn_GL393527          170455 50 +    341619 AGGAAAAGGCAGGTCTTTAAGGTCAATCCCTGTTTTGCTTTAAGTTGTTA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5666158 50 +  72422247 AGGAAAAGGCAGGTCTTTAAGGTCAATCCCTGTTTTGCTTTAAATTGTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44105159 50 -  99891981 AGGAAAAGGCAGATCTTTAAGGTCAATCACTGTTTTGCTTTAGGTTGTTA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124530662 50 - 198365852 AGGAAAAGGCAGGTCTCTAAGGTCAATACCTGTTTTGCTTTAGATTGTTA
i rheMac3.chr3                 C 0 I 291
s macFas5.chr3                 124981799 50 - 192294377 AGGAAAAGGCAGGTCTCTAAGGTCAATACCTGTTTTGCTTTAGATTGTTA
i macFas5.chr3                 C 0 I 338
s papAnu2.chr3                 122246340 50 - 180432695 AGGGAAAGACAGGTCTTTAGGGTCAATCCCTGATTTGCTTTAGGTTGTTA
i papAnu2.chr3                 I 752 I 95
s chlSab2.chr21                121502769 50 - 127223203 AGGGAAAGGCATGTCTTTAGGGTCAATCCCTGGTTTGCTTTAGGTTGTTA
i chlSab2.chr21                I 49 I 48
s calJac3.chr8                  20041458 46 + 128169293 ----CTGGGCAGGTCTTTAAGGTTAATCCCTGTTTTACTTTAGGTTGTTA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4068003 42 +  55844845 AGGGAAAAACAGAACTTTAAGATCAATTCTTGTGTTCACTTA--------
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=3217567.000000
s hg38.chr14_KI270725v1_random     94752 1045 +    172810 GAGGGTGGTTTTACAACATATTGTAGAATACATCATTTCAGTTTTGAGCATCTTGAGTTAAATTGTCCTAACATA---TCTCATGAATTTGATTTTCTTCCCTGGGAAGCTAATATTTCAAAAACTTAAAGAGTATATAGATTTCCAACTGGTATCCAATTTATAAAACTATCTCTAGGCTGCTGATTTCAGGAGGAGGCTCATGAATATTCTATTTGCAGAGAATATATCGGGAGTTAACATCAGCGTCAATATTTGTG-GACGACCAGTTAACTAAACCACCTCTTAGT-GTATTTAGATG-----------------GGAAATCTTAGCTGAAGATATTCAATAATGAACCAA-CAGTGACTAAAAAATTCAATA-TTGAAGTATATTTCATTGTAATTAATTTGAATTGAAGTAGCCATATACAGCTAGTATTTACTACATTGAACAATGCAAA-TAAGAGGAAAA----AAGAACCATCTCTA-------ATACCACATGCCAAAATCCTCATCAATTTATTGTAGCTAAAGGAGTTGATcagaagcagcatttgaaagcatc-aactaaaccagctggggttagttcactgtcattctctcagaaccatctcttctctgaacaaaacaagtacaagagttcattgtgaatct--------gtattctccttgcctattttaaggttttgatgttgacactaatttgtgaaatccctcctgtggtgtgatatttcgt--ttTCCTTGCT--TTCTGTTAGGACAAGAATGCTTCAGCTCTTAATTTAAAATTATGTTTCTCCCTCCTAGGTTGAGTGAACTTAGAATGCATTCTCTGACATATCC--AAGTTTTTCTTAATGTGAATTTGGGG----AAAAAAGCATAGTTAATTAGCTGAGACTTCTTATTCTAGGCTTGACCCTGTGTTCGACATCTATTGAATTTGTAGTTGCATGGGCTGCTCTCTGACACTGGTTACTGACCTGGAAGCTATATTAACGTTAG---GGGAGG-TGGTGTATGAGCAT--TAGAGGTATCCTTGCA-----------------------AGGAAAGACTTGTCTTATCTCAATACGTC--TTTTTTTTTGCACACAAGAAAG
s panTro4.chrUn_GL393527          170505 1047 +    341619 GGGGGTGGTTTTATCACATATTGTAGAATACGTCATTTCAGTTTTGAACATCTGGAGTTAAATTGTCCTAACATA---TCTTATGAAGTTGATTTTCTTCCCTGGGAAGCTAATATTTCAAAAACTTAAAGAGTATATAGATTTCCAACTTGTATCCAATTTATAAAACTATCTCTAGGCTGCTGATTTCAGGAGGAGCCTCATGAATATTCTCTTTGCAGAGAATATATCAGGAGTTAACAACAGCTTCAATATTTGTG-GACGACCAGTTAACTAAGCCACCTCTTAGT-GTATTTAGATG-----------------GGAAATCTTAGCTGAAGATATTCAATAATGAACCAA-CAGTGACtaaaaaatttaata-ttttagtatatttcattgtaattaatttGAATTGAAGTAGCCATATACAGCTAGTATTTACTACATTGAACAATGCAAA-TAAGAGGAAAAAATTAATAACCATCTCTA-------ATACCACATGCCAAAATCCTCATCAATTTATTCTAGCTAAAGGAGTTGATCAGAAGCAGCAGTTGAAAGCACC-AACTAAACCAGCTAGGGTTAGTTCACTGTCAGT---TCagaaccatctcttctctgaacaaaacaagtacaagagttcattgtgaatct--------gcattctccttgcctatttcaaggttttgatgttgacactaatttgtgaaatccctcctgt-gtgtgatatttcgt--ttTCCTTGCT--TTCTGTTAGGACAAGAATGCTTCAGCTCTTAATTTAAAATTATGTTTCTCCCTCCTATGTTGAGTGAACTTAGAATGCATTCTCTGACATATCC--AAGTTCTTGTTAATACGAGTTTGGGG----AAAAAAGCATACTTAATTAGCTAAGGCTTCTTATTCTAGGCTTGACCCTGTGTTCGACATCTATTGAATTTGTAGTTGCATGGGCTGCTCTCTGACACTGGTTACTGACCTGGAAGCTATATTAACGTTAG---GGGAGG-TGGTGTATGAGCAT--TAGAGGTATCCTTGCA-----------------------AGGAAAGACTTGTCTTATCTCAATACGTCTTTTTTTTTTTGCACACAAGAAAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5666208 1047 +  72422247 GGGGGTGGTTTTATCACGTATTGTAGAATATGTCATTTCAGTTTTAAACATCTTGAGTTAAATTGCCCTGACATG---TCTTACGAATTTGATTTTCTTCCCTGGGAAGCTGATATTTCAAAAACTTGAAGAG--TATAGATTTCCAACTTGTATCCAATTTATAAAATTATCTCTAGGCTGCTGGTTTCAGGAGGAGGTTCATGAATATTCTATTTGCAGAGAATATATCGGGAGTTAACAACAGCGTCAATATTTGTG-GACGACCAGTTAACTAAGCCACCTCTTAGT-GTATTTAGATG-----------------GGAAATCTTAGCTGAAGATATTCAATAATGAACCAA-CAGTGACTAAAAAATTCAATATTTTAAGTATATTTCATTGTAATTAATTTGAATTGAAGTAGCTATATACAGCTAGTATTTACTACATTGAACAATGCAAA-TAAGAGGAAAAAATTAATAACCATGTCTA-------ATACCACATGCCAAAATCCTCATAAATTTATTCTAGCTGAAGGAGTTTATcagaagcagcaattgaaagcacc-atctaaaccagctggggttaattcactgtcattctctcagaaccatctcttctctgaacaaaacaagtagaagagttaattgtgaatct--------gcattttccttgcctgttttaaggtttcgatgttgacgcttatttgtgaaatccctcctgtggtgtgatatttcgt--tttccttgct--ttttgttaggACAAGAATGCTTCAGCTCTTAATTTAAAAT--TGTTTCTCCCTCCTAGGTTGAGTGAACTTAGAATGCATTCTCTGACATATCC--AAGTTTTTGTTAATATGAATCTGGGG----AAAAAAGCATACTTAATTAGCTAAGACTTCTTATTCTAGGCTTGACCCTGTGTTCGACATCTTTTGAATCTGTAGTTGCATAGGCTGCTCTCTGACACTGGTTAGTGATCTGGAAGCTATATTAACGTTAG---GGGAGG-TGGTGTGTGAGCAT--TAGAGGTATCCTTGCA-----------------------AGGAAAGACTTGTCTTATCTCAATACGTC-TTTTTTTTTTGCACACAAGAAAG
i ponAbe2.chrUn                C 0 I 244
s nomLeu3.chr17                 44105209 1048 -  99891981 GGGGGTGGTTTCATAACA---TGTAGAATATGTCATTTCAGTTTTGAACATCTTGAGTTAAATTGTCCTAACATATCTTCTTATGAATTTGATTTTCTTCCCTGGGGAGCTAATATTTCAAAAACTTAAAGAG--TATAGATATCCAACTTGTATTCAATTTATAAAATTATCCCTAGGCTGCTGATTTCAGGAGGAAGCTCATGAATATTCTATTTGCAGACAATATATCTGGAATTAACAACAGCTTCAATATTTGTG-GACAACCAGTTAACTAAGCCACCTCTTAGT-ATATTTAGATG-----------------GAAAATCTTAGCTGAAGATATTAAATAATGAACCAA-CAGTGACTAAAAAATTGAATA-TTTAAGTATATTTCATTGTAATTAATTTGAATTTAAGTAGCCATATACAGCTAGTATTTACCACATTGAACAATGCAAA-TTAGAGGAAAAAATTAATAACCATATCTA-------ATACCACATGCCAAAATCCTCATAAATTTATTCTAGCTAAAGGAGTTCATcagaagcagcaattgaaagcacc-aactaatccacctgacgttaattcactgtcattctctcagaaccatctcttctctgaacaaaacaagtagaagagttaattgtgaatct--------gcattttccctgcctattttaaggttttgatgttgacactaatttgttaaatccctcctgtgatgtgatatttcat--tttacttgcta-ttttgttaggaagagAATGCTTCAGCTCTTAATTTAAAAGTATGTATCTCCCTCCTAGGTTGAGTGAACTTAGAATGCATTCTCTGACATATCCATATGTTTTTGTTAATACGAATTTGGGG----AAAAAAGCATACTTAATTAACTAAGACTTCTCATTCTTGGCTTGACCCTGTGTTCAACAGTTTTTGAATTTGTAGTTGCATAGGCTGCTCTCTGACACTGGTTAGTGATCTGGAAGCTATATTAACTTTAG---GGGAGG-TGGTGTATGAGCAT--TAGAGGTATCCTTGCA-----------------------AAGAAAGACTTGTCTTATGTCAATACTTC----TTTTTTTGCACACAAGAAAG
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124531003 1049 - 198365852 GGGGGAGGCTTTATTCCGTGTTGTAGAATATGTCGTTTCAGTTTTGAACATCTTGAGTTAAATTGTCCTAACATA---TCCTATGAATTTGATTTTCTTCCCCGGGAAGCTAATATTTCAAACAGTTAAAGAG--TATAGATTTCCAACTTGTATCCAATTTATAAAATTATCCCCAGACTGCTGATTTTAGGAAGAGGCTCATAAATATTCTATTTGCAGACAATATATCAGGAGCTAACAACAGCTTCAATATTTGTGAGACAACCAGTTAACTAAGCCACCTCTTAGT-GTATTTAGATG-----------------GAAAATCTTAGCTGAAGATATTGCATAATGAACCAA-CAGTGACTAAAAAATGGAATA-TTTAAGCGTA-TTCATCATAATTAATTTGAATTTAAGAAGCCATATACGGCTCATATTTACCACATTGAACGATGCAAA-TTAGAGGAAAATATTAATAACCATATCTA-------ATACCACAGGCCAAAATCCTCATAAATTTATTCTAGCTGAAGGAGTTCTTCAGAAGTAGCAACTGAAAGCACC-AACTAAACCAGCTTGTATTAATTCACTATCATTCTTTCAGAACCATTTCTTTTCTGAACAAAACAAGTAGAAGAGTTAATTGTGAATCT--------GCATTTTCCTTGCCTATTTTAAGGTTTTGATGTTGACACTAATTGGTGAAATCCCTCCTGTGGTGTGATATTTCAT--TTTACTTGCTA-TTTTGTTAGGAAGAGAGTGTGTCAGCTCTTAATTTAAAATTATGTTTCTCCCTCCTATGTTGAGTGAACTTAGAATGCATTCTCTGACTTATCCACATGTTTTTGTTAATATGAATTTAGGG----AAAAAAGCATACTTAATTAGCTAAGACTTCTCATTCTAGGCTTGACCCTGTATTTGACATCTTTTGAATTTGTAGTTGCATAGGCTGCTCTCTGACACTGGTTAGTGATCTTGAAGCTATATTTAGGTTAG---GGGAGG-TGGTGTATGAGAAT--TAGACGTATCCTTGCA-----------------------AGGAAAGACTTGTCTTATCCCAATACATC---TTTTTTTTGCACACAACAAAG
i rheMac3.chr3                 I 291 C 0
s macFas5.chr3                 124982187 1049 - 192294377 GGGGGAGGCTTTATTCCGTGTTGTAGAGTATGTCGTTTCAGTTTTGAACATCTTGAGTTAAATTGTCCTAACATA---TCCTATGAATTTGATTTTCTTCCCCGGGAAGCTAATATTTCAAACAGTTAAAGAG--TATAGATTTCCAACTTGTATCCAATTTATAAAATTATCCCCAGACTGCTGATTTTAGGAAGAGGCTCATAAATATTCTATTTGCAGACAATATATCAGGAGCTAACAACAGCTTCAATATTTGTGAGACAACCAGTTAACTAAGCCACCTCTTAGT-GTATTTAGATG-----------------GAAAATCTTAGCTGAAGATATTGCATAATGAACCAA-CAgtgactaaaaaatggaata-tttaagcgta-ttcatcataattaatttgaatttaagaagccatatacggctcatatttaccacattgaacgatgcaAA-TTAGAGGAAAATATTAATAACCATATCTA-------ATACCACAGGCCAAAATCCTCATAAATTTATTCTAGCTGAAGGAGTTCTTCAGAAGTAGCAACTGAAAGCACC-AACTAAACCAGCTTGTATTAATTCACTATCATTCTCTCAGAACCATTTCTTTTCTGAACAAAACAAGTAGAAGAGTTAATTGTGAATCT--------GCATTTTCCTTGCCTATTTTAAGGTTTTGATGTTGACACTAATTGGTGAAATCCCTCCTGTGGTGTGATATTTCAT--TTTACTTGCTA-TTTTGTTAGGAAGAGAGTGTGTCAGCTCTTAATTTAAAATTATGTTTCTCCCTCCTATGTTGAGTGAACTTAGAATGCATTCTCTGACTTATCCACATGTTTTTGTTAATATGAATTTAGGG----AAAAAAGCATACTTAATTAGCTAAGACTTCTCATTCTAGGCTTGACCCTGTATTTGACATCTTTTGAATTTGTAGTTGCATAGGCTGCTCTCTGACACTGGTTAGTGATCTTGAAGCTATATTTAGGTTAG---GGGAGG-TGGTGTATGAGAAT--TAGACGTATCCTTGCA-----------------------AGGAAAGACTTGTCTTATCCCAATACATC---TTTTTTTTGCACACAACAAAG
i macFas5.chr3                 I 338 C 0
s papAnu2.chr3                 122246485 1050 - 180432695 GGGGGAAGCTTTATTCCGTGTTGTAGAATATGTCGTTTCAGTTTTGAACATCTTGAGTTAAATTGTCCTAACATA---TCCTATGAATTTGATTTTCTTCCCTGGGAAGCTAATATTTCAAACAGTTAAAGAG--TATAGATTTCCAACTTGTATCCAATTTATAAAATTATCCCCAGACTGCTGATTTTAGGAAGAGGCTCATAAATATTCTATTTGCAGACAATATATCAGGAGCTAACAACAGCTTCAATATTTGTGAGACAACCAGTTAACTAAGCCACCTCTTAGT-GTATTTAGATG-----------------GAAAATCTTAGCTGAAGATATTGCATAATGAAGCAA-CAGTGActaaaaaatggaata-tttaagCATATTTCATCataattaatttgaatttaaGAAGCCATATACGGCTCATATTTACCACAGTGAACAATGTAAA-TTAGAGGAAAACATTAATAACCCTATCTA-------ATACCACAGGCCAAAATCCTCATAAATTTATTCTAGCTGAAGGAGTTCTTCAGAAGTAGCAACTGAAAGCACC-AACTAAACCAGCTTGTATTAATTCACTATCATTCTCTCAGAACCATTTCTTTTCTGAACAAAACAAGTAGAAGAGTTAATTGTGAATCT--------GCATTTTCCTTGCCTATTTTAAGGTTTTGATGTTGACACTAATTGGTGAAATCCCTCCTGTGGTgtgatatttcat--tttacttGCTA-TTTTGTTAGGAAGAGAGTGTGTCAgctcttaatttaaaattatgtttctccCTCCTATGTTGAGTGAACTTAGAATGCATTCTCTGACTTATCCACATGTTTTTGTTAATATGAATTTAGGG----AAAAAAGCATACTTAATTAGCTAAGACTTCTCATTCTAGGCTTGACCCTGTATTTGACATCTTTTGAATTTGTAGTTGCATAGGCTGCTCTCTGACACTGGTTAGTGATCTGGAAGCTATATTTAGGTTGG---GGGAGG-TGGTGTATGAGAAT--TAGACGTATCCTTGCA-----------------------AGGAAAGACTTGTCTTATCTCAATACGTC---ttttttttGCACACAACAAAG
i papAnu2.chr3                 I 95 C 0
s chlSab2.chr21                121502867 1031 - 127223203 GGGGGAGGCTTTATTCCGTGTTGTAGAATATGTCGTTTCAGTTTTGAACATCTTGAGTTAAATTGTCCTAACATA---TCTTATGAATTTGATTTTCTTCCCCGGGAAGTTAATATTTCAAACAGTTAAAGAC--TATAGATTTCCAACTTGTATCCAATTTATAAAATTATCCCCAGACTGCTGATTTTAGGAAGAGGCTTATAAATATTCTATTTGCAGACAATATATCAGGAGCTAACAACAGCTTCAATATTTGTGAGACAA-CAGTTAACTAAGCCACCTCTTAG-------------------------------------TTAGCTAAAGATATTGCATAATGAACCAA-CAgtgactaaaaaatggaata-tttaagcgtatttcatcataattaatttgaatttaagtagccatatagagctcatatttaccacattgaacaatgcaAA-TTAGAGGAAAACATTAATAACCATATCTA-------ATACCACAGGCCAAAATCCTCATAAATTTATTCTAGCTAAAGGAGTTCTTCAGAAGTAGCAATTGAAAGCACC-AACTAAACCAGCTTGTATTAATTCACTATCATTCTCTCAGAACCATTTCTTCTCTGAACAAAACAAGTAGAAGAGTTAATTGTGAATCT--------GCATTTTCCTTGTCTATTTTAAGGTTTTGATGTTGACACTAATTGGTGAAATCCCTCCTGTGGTGTGATATTTCAT--TTTACTTGCTA-TTTTGTTAGGAAAAGAATGCGTCAGCTCTTAATTTAAAATTATGTTTCTCCCTCCTATGTTGAGTGAACTTAGAATGCATTCTCTGACTTATCCACATGTTTTTGTTAATATGAATTTAGGG----AAAAAAGCATACTTAATTAGCTAAGACTTCTCATTCTAGGCTTGACCCTGTATTTGACATCTTTTGAATTTGTAGTTGCATAGGCTGCTCTCTGACACTGGTTAGTGATCTGGAAGCTATATTTAGGTTAG---GGGAGG-TGGTGTATGAGAAT--TAGACGTATCCTTGCA-----------------------AGGAAAGACTTGTCTTATCTCAATACGTC--TTTTTTTTTGCACACAACAAAG
i chlSab2.chr21                I 48 C 0
s calJac3.chr8                  20041504 1045 + 128169293 GGGGGTGATTTTATCATATGTCGTAGAATATGTCATTTCAGTTTTGAACATCTTGAGTTAAATTGTCCTAAGGTA---TCTAATAAACATGATTTTCTTCCTTGGGAAGCTAATATTTCAAAAAGTTAAAGAG--TGTAGATTTCCAGCATGTATCCCACTTATAAAATTGTCCCTAGGCTGTTTATTTTAGGAAGAGGTTTATGAATATTCTATATGCAGACAATATATAAGGAGTTAACAACAGCTTCAGTACTTGTGGGACAACCAGTTAACTAAGCCACCTCTTAGTGGCATTTAGAAG-----------------GAAAATCTTAGCTGAATATATTATATAATAAACCAGTCAgtgatgaaaaaattgaata-ttgaagtatactttattgtaattaatttgaattaaagtagccatatatggctagtatataacatattgaacaatgcaAA-TTAGAGGAAAA-ATTAATAACCAGTTCTA-------ATACCACATGCCAAAATCCTCATCCATTTATTCCAGCTAAAGGGGCTCATCACTAGTAGCAACTGAAAGCACC-ATCTAAACCAGTTTGTGCTAATTCA--GTCATTTTCTCACAGCCATCTCTTCTCTGAACATAACAAGTAGAAGAGTCAATTCTGAATCT--------GCACTTTCCTTGACTATTTTAAGGTTTTTGCGTTCACACTAATTTGTGAAATCCCTCCTGTGGTGCGATACTTCAT--TTTACTGGCTATTTTTGTTAGGGAGAAAGTGTTTCAGCCCTTTATTTAAAATTATGTTTCTCCCTCCTAAGTTGAGTGAACTTAGAATGCATTCCCTGATATACCCACATGTTTTTGTTAATATGAATTTGAGGGAAAAAAAAAACATACTTAATTAGCGAAGACTTCTCATTCTAGGCTTGACCCTGTATTTGGCCTCTTTTGAGTTTGTAGCTGCATAGGCTGCTCTCTGACAGTAGTTAGTGATCTGGAAGCTTTATTAAGGTTAGAGTAGGAGG-TGGTACATGAGCAT--CAAAC----------------------------------AGGGAAGACTTGTCTTATCTCAATGCATC----ATTTTTTGCTCACAAGAAAG
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4068045 1043 +  55844845 GAAGGTGGTTTTACCACATGCTATG-----------TTCGGTTTTGAACATCTTGACTAGCATTGTCTTAAGATA---TTTTATGAATTTGATTTTCACTTCTGGGAACCTAATATTTCAAAAAGTTAAAGAG--TATAGATTTTCAACATG-AACCACATTATAAAATAATTCCTTATGTGTTGATTTTAGGAAGAGGCTCATAAGTATTCTGTTAGCAGA---------------------------CAACATTTGTGAGAGAGACTGTTAACTAAGGGAGCTCTGATG-ATCCTCAGAAGTGGGGGTCTCTGGTTATGCAAGCTCTGGCTGAAGATATTGTTTAATGAGCCAATCAGTGCCCAAGAACATAAACA-TTTAACTTAATTTAAGTGTAATTA-----AATTTAAAGGGACATATTTGTCTAGCATCCACCATATTGAATAATTcaagtttagagaaaaaaatcaatgactttatcaataactgcataccacatgccaagaaccttgttaatttgttc-agcaaaaagagtacatcaggagtagtaattggaatcaccaaactaaaccaacttatgttaattcactatcattctcccagaaccatctcttctctgggcaaaattaacacagaagttaattgagactcttctgggaatcattatcctt-catattttaagattttgatgttgacactaatttatgaaatccctcttgggatgcgatattacattattttttcccta-ttttgttatgaagaAAACACTTCAGTCCTTGATTTAAAATTGTGTTTCT--CTGCTAGGTTGAGC-ACCGTAGAATCTATTCTCTGACACATCT----------GTGGATGTAACTT---GG----AAAAAAGT---CGGTATTAG-TAAGATTTCTTTTTCCAGGC-TGATTCTATAATTGGCCTTTTTTGAATATACAGTTGTGTGTGCTATTATCTGGCACTACTTAGAAATCTGGGAGCTAC-TTGAGGTTAA---GAGAGATTGGTGCATGAGGATAATATATGTATCTTTGTAATGCAAACATATGGTCCTCAATCAGGAAAGATTAGCTGTATCTAAA-ATGTT----TACTTTTGAACACAAGGAAC
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=772919.000000
s hg38.chr14_KI270725v1_random     95797 239 +    172810 TCAATG------------------------------TTTGAGTCTTCTAAAATCTTCCTATTTCCAAGTTGCAGAGTACC-------ATTGATTCCTAAACAAAGACCTAA-TTTTTGAGTCAGAGACGTGGCAAGGTAGTGAATCACCATTATAATTTAACAATCTTCAAGATAAAATTATCTCTCTGATATTTAGAT---TTTGCCCAATTATTAAGATATTTGGGTGTTTCGTTAAG-----AATGGAAGATTCTAGTCT---------CTTGAGCAGAGACTATAAAGGC
s panTro4.chrUn_GL393527          171552 239 +    341619 TCAGTG------------------------------TTTgagtcttctaaaatcttcctatttccaagttgcagagtacc-------attgattcctaaacaaagacctaa-tttttgactcagagacgtggcaaggtagtgaatcaccATTATAATTTAACAATCTTCAAGATAAAATTATCTCTCTGATACTTAGAT---TTTGCCCAATTATGAAGATATTTGGGTGTTTTGTTAAG-----AATGGAAGACTCTAGTCT---------CTTGAGCAGAGACTATAAAGGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5667499 239 +  72422247 TTAATG------------------------------TTTGAGTCTTCTAAAATCTTCCTATTTCCAAGTTGCAGAGTACC-------ATTGATTCCTAAACAAAGATCTAA-TTTTTGACTCAGAGACGTGGCAAGGTAGTGAATCACCATTATAATTTAACAATCTTCAAGATAAAATTATCTCTCTGATGTTTAGAT---TTTGCCCAATTATTAAGGTGTTTGGGTGTTTCGTTAAG-----AATGGAAGACTCTAGTCT---------CTTGAGCAGAGACTATAAAGGC
i ponAbe2.chrUn                I 244 C 0
s nomLeu3.chr17                 44106257 239 -  99891981 TCAATG------------------------------TTTGAGCCTTCTAAAATCTTCCTATTTCCAAGTTGCAGAGTACC-------ATTGATTCCTAAACAAAGATCTAA-TTTTTGACTCAGAGACATGGCAAGGTAGTGAATCACCATTAGAATTTAACAATCTTCAAGATAAAATTATCTCTCTGATATTTAGAT---TTTGCCCAATTATTAAGATGTTTGAGTGTTTTGTTAAG-----AATGGAAGACTCTAGTCT---------CTTGAGCAGAGACTATAAAGGC
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124532052 237 - 198365852 TCAATG------------------------------TTTGAGTCTTCTAAAATCTTCCTATttccaagttgcagagtacc-------attgattcctaaacgaagatctaa-tttttgactcagagacgaggcaaggtagtgaatcaccattgtaatttaacaatcttcaagatAAAATTATCTCTCTGATATTTAGAT---TTTGCCTAATTATTAAC--ATTTGGGTGTTCTGTTAAG-----AATGGAAGACTCTAGTCT---------CTTGAGCAGAGACTATAAAGGC
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124983236 237 - 192294377 TCAATG------------------------------TTTGAGTCTTCTAAAATCTTCCTATTTCCAAGTTGCAGAGTACC-------ATTGATTCCTAAACGAAGATCTAA-TTTTTGACTCAGAGACGAGGCAAGGTAGTGAATCACCATTGTAATTTAACAATCTTCAAGATAAAATTATCTCTCTGATATTTAGAT---TTTGCCTAATTATTAAC--ATTTGGGTGTTCTGTTAAG-----AATGGAAGACTCTAGTCT---------CTTGAGCAGAGACTATAAAGGC
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122247535 237 - 180432695 TCAATG------------------------------TTTGAGTCTTCTAAAATCTTCCTATTTCCAAGTTGCAGAGTACC-------ACTGATTCCTAAATAAAGATCTAT-TTTTTGACTCAGAGACGTGGCAAGGTAGTGAATCACCATTGTAATTTAACAATCTTCAAGATAAAATTATCTCTCTGATATTTAGAT---TTTGCCTAATTATTAAC--ATTTGGGTGTTCTGTTAAG-----AATGGAAGACTCTAGTCT---------CTTGTGCAGAGACTATAAGGGC
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121503898 227 - 127223203 TCAATG------------------------------TTTGAGT------AAATCTTCCTATTTCTAAGTTGCAGAGTACC-------ATTGATTCCTAAACAAAGATCTAA-TTTTTGACTCAGAGACGTGGCAAGGTAGTGAATCACCACTGTAATTTAACAATCTTTAAGATAAAATTATCTCTCTGATATTTAGAT---TTTGCCTAATTATTAACATATTTGG------TGTTAAG-----AATGGAAGACTCTAGTCT---------CTTGAGCAGAGACTATAAAGGC
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20042549 246 + 128169293 CCAATG------------------------------TTTGAATCCTCTAAACTCTTCCTATTTACAAGCTGCAGAGGATCTAAACAAACCAATTCCTAAACAAAGACCTAA-ATTTTGACTCAGAGACATGGCAAGGTAGTGAAACACCAACACAATTTAACAATATTCAAGATAAAATGATCTCTCTGATATTTAGTT---TTTGCCCAATTATTAAGATATTTGGGTGTTCCTTTAAG-----AATGGAAGACTCTAGTCT---------CTTGAGCAGGGACTATGTAGGC
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4069088 287 +  55844845 TCAATGGTATTTAAGGATTTGTGTATTTTGGAGCTATTTGAGTTCTCTCAAATATTTCTATTTCAAAATTTTAAAGTATT-------GTTCATTCCAAAGCAAAGACCTAATTTTTTGGCTCAAAAACACGGCTAGTTTGGCAATTACTGTTGTAATTTAGCAGTCTTCAAGATCAGTTTCTCTCTCTGATATTTAGTTAAATTTGCTTGACTATTGAGATGGTTGGGTGTGTCATTAAAAAAATAAAGAGAAATTCAGGTTCTTACTATGGCTTGAATAGAAAATATAAAGGC
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=315187.000000
s hg38.chr14_KI270725v1_random     96036 120 +    172810 CTCAGATGATCATTTTTAATTTTATGCTCTTTTCTTTAACACCTTCAACACAGTTGGAAGCGGCTGATATTCCCCAGAGTTGTTGTGTTTTTTAAACCAAATGCATGGTTCAGTGGTAGA
s panTro4.chrUn_GL393527          171791 120 +    341619 CTCAGATGATCATTTTTTATTTTATGCTCTTTTCTTTAACACCTACAACACAGTTGGAAGCAGCTGATATTCCCCAGAGTTGTTGTGTTTTTTAAACCAAATGCATGGTTCAGTGGTAGA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5667738 120 +  72422247 CTCAGATGATCATTTATAATTTTATGCTCTTTTCTTTAACGTCTTTAACACAGTTGGAAGCAGCCAATGTTCCCCAGAGTTGTTGTGTTTTTTAAACCAAATGCATGGTTCAGTGGTGGA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44106496 117 -  99891981 CTCAGATGATCATTTATATTTTTATGCTCTTTTCTTTAACATCTTCAACACAGTTGGAAGCAGCCAATGTTCCCCAGA---GTTGTGTTTTTTAAACCAAATGCATGGTTCAGTGGTAGA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124532289 119 - 198365852 TTCAGATGGTCATTTATAATTTTATGCTCTTTTCTTAAACATCTTCAGCA-GGTTGGAAGTAGTCAATGTTCCCCAGAGTTGTTGTGTTTTTTAAACCAAATATATGGTTCAATGGTAGA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124983473 119 - 192294377 TTCAGATGGTCATTTATAATTTTATGCTCTTTTCTTAAACATCTTCAGCA-GGTTGGAAGTAGTCAATGTTCCCCAGAGTTGTTGTGTTTTTTAAACCAAATATATGGTTCAATGGTAGA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122247772 119 - 180432695 TTCAGAtggtcatttattattttatgctcTTTTCTTAAACATCTTCAGCA-GGTTGGAAGTAGTCAATGTTCCCCAGAGTTGTTGTGGTTTTTAAACCAAATATATGGTTCAATGGTAGA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121504125 119 - 127223203 TTCAGATGGTCATTTATAATTTTATGTTCTTTTCTTAAACATCTTCAGCA-GGTTGGAAGTAGTCAATGTTCCCCAGAGTTGTTGTGTTTTTTAAACCAAATACATGGTTCAATGGTAGA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20042795 116 + 128169293 CTTAGATGGTTATTTATTCTTTTATGTTCTCTTCTATATCATCTTCAACATGGCTGGAAGCAGCCAATGTTCTCCACAGTT-TTGTGTTTTTTAAACCAAATACATGGTTCAATG---GA
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I
e canFam3.chr18                  4069375   0 +  55844845 C

a score=152597.000000
s hg38.chr14_KI270725v1_random     96156 49 +    172810 AAACTGGGCTGATCCAAGCTGTTTTCAGTAAACACTTCATTTCAGGTGA
s panTro4.chrUn_GL393527          171911 49 +    341619 AAACTGGGCTGATCCAAGCTGTTTTCAGTAAACACTTCATTTCAGGTGA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5667858 49 +  72422247 AAACTGGGCCGATCCAAGCTGTTTTCAGGAAACACTTCATTTCAGGTGA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44106613 49 -  99891981 AAACTGGGCTGATCCAAGCTGTTTTCAGTAAACAGTTCATTTCAGGTGA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124532408 49 - 198365852 AAACTGGGCTGATCCAAGCAGTTTTCAGTAAACACTTCATTTCAGGTGA
i rheMac3.chr3                 C 0 I 1
s macFas5.chr3                 124983592 49 - 192294377 AAACTGGGCTGATCCAAGCAGTTTTCAGTAAACACTTCATTTCAGGTGA
i macFas5.chr3                 C 0 I 1
s papAnu2.chr3                 122247891 49 - 180432695 AAACTGGGCTGATCCAAGCAGTTTTCAGTAAACACTTCATTTCAGGTGA
i papAnu2.chr3                 C 0 I 1
s chlSab2.chr21                121504244 49 - 127223203 AAACTGGGCTGATCCAAGCAGTTTTCAGTAAACACTTCATTTCAGGTGA
i chlSab2.chr21                C 0 I 1
s calJac3.chr8                  20042911 48 + 128169293 AAACTGGGCTGATCCAAGCTGTTTTCAGTAAATGCTTCATTTCAGGTG-
i calJac3.chr8                 C 0 I 1
s canFam3.chr18                  4069375 24 +  55844845 AAGCTGTGC-------------TTTCAATAAGCACTT------------
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=-42.000000
s hg38.chr14_KI270725v1_random     96205 1 +    172810 A
s panTro4.chrUn_GL393527          171960 1 +    341619 C
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5667907 1 +  72422247 C
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44106662 1 -  99891981 C
i nomLeu3.chr17                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I
e canFam3.chr18                  4069399 0 +  55844845 C
e rheMac3.chr3                 124532457 1 - 198365852 I
e calJac3.chr8                  20042959 1 + 128169293 I
e chlSab2.chr21                121504293 1 - 127223203 I
e papAnu2.chr3                 122247940 1 - 180432695 I
e macFas5.chr3                 124983641 1 - 192294377 I

a score=254890.000000
s hg38.chr14_KI270725v1_random     96206 81 +    172810 CTATTTCATATTAAATAATCTCTAGATCCTGTCTTCCAAACTAACTAGATCAGATAACCTACCCTGGA-TTTTCTCCTTTTA
s panTro4.chrUn_GL393527          171961 81 +    341619 CTATTTCATATTAAATAATCTCTAGATCCTGTCTTCGAAACTAACTAGATCAGGTAACCTACCCTGGA-TTTTCTCCTTTTA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5667908 81 +  72422247 CTATTTCATATTAAATAATCTCTAGATCCTGTCTTCAAAACTAACTAGATCAGATAACCTACCCTAGA-TTTTCCCCTTTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44106663 81 -  99891981 CTATTTCATATTAAATAATCTCTAGATCCtgtcttcaaaactaactagatcagataacctaccctaga-ttttcacctttta
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124532458 81 - 198365852 CTATTCCATATTAAATAATCTCTAGATCCTGTTTCCAAAACTAACTAGATCAGGTAACCTACCCAAGA-TTTTCACCTTTTA
i rheMac3.chr3                 I 1 C 0
s macFas5.chr3                 124983642 81 - 192294377 CTATTCCATATTAAATAATCTCTAGATCCTGTTTCCAAAACTAACTAGATCAGGTAACCTACCCAAGA-TTTTCACCTTTTA
i macFas5.chr3                 I 1 C 0
s papAnu2.chr3                 122247941 79 - 180432695 CTATTCCAtattaaataatctctagatccTGTTT-CAAAACT-ACCAGATCAGGTAACCTACCCAAGA-TTTTCACCTTTTA
i papAnu2.chr3                 I 1 I 55
s chlSab2.chr21                121504294 81 - 127223203 CTATTCCATATTAAATAATCTCTAGATCCTGTTTTCAAAATTAACTAGATCAGATAACCTACCCAAGA-TTTTCACCTTTTA
i chlSab2.chr21                I 1 C 0
s calJac3.chr8                  20042960 82 + 128169293 TTATTCCATATTAAATAATCTCTAGATCCTATCTTCAAAACTAACTAGATCAGATAACCTACCCTAGATTTTTCACCATTTA
i calJac3.chr8                 I 1 C 0
s canFam3.chr18                  4069399 57 +  55844845 ------------------------GATTCtgtcctcaaaactaattagacaagataacctaatccaga-ttcccattcttta
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=241808.000000
s hg38.chr14_KI270725v1_random     96287  99 +    172810 GGGTCTGTGAGCTGCAGTCACTTTTGTGAAAATGATTGCAATGACAAGAT-AGAGTTGTAGATGGGGAAAATGTTTTGACTAATTTAAGCATAGTGG-TAT
s panTro4.chrUn_GL393527          172042  99 +    341619 GTGTCTGTGAGCTGCAGTCACTTTTGTGAAAATGATTGCAATGACAAGAT-AGAGTTGTAGATGGGGAAAATGTTTTGACTAATTTAAGCATAGTGG-TAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5667989 100 +  72422247 GGGTCTGTTAGCTGCAGTCACTTTTGTGAAAATGATTGCAATGAAAAGAT-AGAGTTGTAGATGGGGAAAATGTTTTGACTAATTTAAGCATAGTGGTTAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44106744  98 -  99891981 gggtctgttagctgcagtcacttttgTGAAAATGATTGCAATGAAAAGAT-AGAGTTGCAGATGGGGAAAATG-tttgactaatttaagcatagtgg-tat
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124532539  98 - 198365852 GGGTCAGTTAGTTGCAGTCAC-TTTGTGAAAATGATTGCAATGAAAAGATAAGAGTTGCAGATGGGGG-AATGTTTTGACTAATTTAAGCATAGTGG-TAT
i rheMac3.chr3                 C 0 I 3
s macFas5.chr3                 124983723  98 - 192294377 GGGTCAGTTAGTTGCAGTCAC-TTTGTGAAAATGATTGCAATGAAAAGATAAGAGTTGCAGATGGGGG-AATGTTTTGACTAATTTAAGCATAGTGG-TAT
i macFas5.chr3                 C 0 I 3
s chlSab2.chr21                121504375  99 - 127223203 GGGTCGGTTAGCTGCAGTCAC-TTTGTGAAAATGATCGCAATGAAAAGATAAGAGTTGCAGATGGGGGAAATGTTTTGATTAATTTAAGCATAGTGC-TAT
i chlSab2.chr21                C 0 I 3
s calJac3.chr8                  20043042  99 + 128169293 GGGTCTGTTAGTTGCAGTCACTTTTGTGAAAATGATTGCAATGAAAAGAT-AAAGTTGCACATAGGGAAAATGTTTTGGCTAATTTAAGCATAGTGG-TAT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4069456  95 +  55844845 aagtctgttagctgcagtcatttttggaataatTACTGCAACTCAAAGAC-ACAGTTGTAGAT----AAACTGTGTTGACTAGTATAAGCACAGAGG-AAT
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I
e papAnu2.chr3                 122248020  55 - 180432695 I

a score=3559762.000000
s hg38.chr14_KI270725v1_random     96386 1173 +    172810 TTCATATGAGAATTGA---AGTTA-CAC-ACATTTGAAAATTATAATGGAGTCTCTTGGCTGAGCTTT-AAAAAAAATAGCGTTTAGGCTAAACAGGGAACTG-CTACCTCTCCT-AAAATCAGAAAGATGTTACAGTAATTCTCCATTCTCTAGAATTATC-----------AGGAAGCACCTTTGTGATGATTTACTTTTGGTCTTGGGA-----GTGTGAGCCCGTGTAGTCTTGGAACCATCAATTAGAATGATGGCTTTCTGATCCCAAAGTCATTCGTTCTGAAAACAATATTTTTCATAAATTTGAAAGTGA-----GAAGTTTTGATCTT------------GCCA-TTC-CCAAATAACTCTCTTAATAAGAGGCATCAGCA-TGC-TTCAGTGACAGCTGTCACCTTCCAGTGctgagagtcatctttgagttct-ccatttc----actccctacactccaatttagctgcagttc-tcttggccagtcctctgaaatacatccatggcctaacaacttctcaccactaataccactcatcctgacagcattctcacctaagtcactaccttttttctct-ggattacaatagcatcccaatttattt-----gctcacata-acctattta-----ttctacacggtgcaccagatacaccccattgtaatgcaaacacaatcatgttattctctggtgaaagtatctcatatattcctatcgcatttaaaattaattcagaatcatcccatgattatcaaaaccctacatgctctTCCACAACATGGTTTACTTCCAAGATATCTCTTCAACTCTTTTTTCACTGTACTGAATTGGTGACTAATAGTCATATTTTTGTTTTTGCTCAAAAAGTCTTGACTTCTAAATTTTTC-AGTTTCTCCTTTATCCACAGGTAA-CTCTTTCCTCATAAGGCAAATT--------------GCTTGCTTCCTTGAGATCTGCTCTCAAAGATACCCTTCATTTTCTACCTAATATTAATAACTTTAATCATTCACTATTCCATTACTATGCTCTATAGTGTATACAATTTCTGTTCTTTGTCATGTTA---------TTAACTAAA--TTATTTATTTGTTCCAGTAACGTATTCCATAAATATTATACACATAAAAAT------TGTTATTTTTATTGCTGTATGCTCAGCTGCCCAATAACAGTCTGAGGATTAACATATTTGTTAAATGCACAAATACGTTCTTTCATAAATTTTAGTTT
s panTro4.chrUn_GL393527          172141 1175 +    341619 TTCGTATGAGAATTTA---AGTTA-CAC-ACGTTTGAAAATTATAATGGAGTCTCTTGGCTGAGCTTT-AAAAAAAATAGCGTTTAGGCTAAACAGGGAACTG-CCACCTCTCCT-AAAATCAGAAAGATGTTACAGTAATTCTTCATTCTCTAGAATTATC-----------AGGAAGCACCTTTGTGATTATTTACTTTTGTTCTTGGGA-----GTGTGAGCCCGTGTAGTCTTGGAACCATCAATTAGAATGGTGGCTTTCTGATCCCAAAGTCATTCGTTCTGGAAACAGTATTTTTCATAAATTTGAAAGTGA-----GAAGTTTTGATCTT------------GCCA-TTC-CCAAGTAACTCTCTTAATAAGAGGCATCAGCA-TGC-TTCAGTGACAGCTGTCACTTTCCAGTGctcagagtcatctttgagttct-ccatttc----attccctacactccaatttagctgcagttc-tcttggccagtcctatgaaatacatccatgacctaacgacttctcaccactactaccactgatcctgacagcattctcacctaagtcactaccttttttctct-ggattacaatagcctcccagtttattt-----gctcacata-acctattta-----ttctacacggtgcaccagatagacccctttgaaatgcaaacacaatcatgttattctctggtgaaattatctcatatatttctattgcatttaaaattaattcagaataatcccatgattatcaaaaccctacatgctctTCCACAACATGGTTTACTTCCAAGATATCTCTTCAACTTTTTTTTCACTGTACTGAATTGGTGACTAATAATCATATTTTTGTTTTTGCTCAAAAAGTCTTGACTTGTAAATTTTTC-AGTTTCTCCTTTATCCACAGGTAA-CTCTTTCCTCATAAGGCGAATT--------------GTTTGCTTCCTTGACTTCTGCTCTCAAAGATACCCTTTATTTTCTATCTAATATTAATAACTTTAATCATTCATCATTCCATTACTATGCTCTATAGTGTATACAATTTCTGTTCTTTGTCATGTTA---------TTAACTAAC--TTATTTATTTGTTCCAGTAACGTATTCCATAAATATTGCACACATAAAAATTA----TGTTATTTTTATTGCTGTATGCTCAGCTGCCCAATAACAGTCTGAGGATTAACATATTTGTTAAGTGCACAAATACATTCTTTCACAAATGTCAGTTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5668089 1169 +  72422247 TTAATATGAGAATTTA---AGTTA-CAC-ACATTTGAAAATTACAAT-GAGTCTCTTGGCTGAGCTTTAAAAAAAAATAGCGTTTAGGCTAAAAAGGGAACTG-CTACCTCTCCTAAAAATCAGAAAGACATTACAGTAATTCTCCATTCTCTAAAATTATC-----------AGGAAGCCCCTTTGTGATGATTTACTTTTGCTCTTGGGA-----GTGTGAGCCTGTGTAGTCGTGGAACCATCAATTAGAATGATGGCTTTCTGATCCCAAAGTCATGCGTTCTGAAAACAATATTTTTCATAAATTTGAAAGTGA-----GAAGTTTCGATTTT------------GCCA-TTC-CCAAGTAACTCTCTTAATAAGAGGCATCAGCA-TGC-TTCAGTGACAGCTGTCACCTTCCAGTGctgagagtcatctttgagttct-ccatttc----agtccctacactccagtttagctgcagttc-tcttggccagtcctgtgaaatacatccatggcctaacgacttctcaccactaataccactcatactaacagcattctcaccttagtcactaccttttttctct-ggattacaatagcctcccaatttattt-----gctcacata-acctactta-----ttctacacagtgcaccagatacacccctttgaaatgcaaacacaatcatgttattctctggtgaaattatcttatatattcctatcgcatttaaaattaattcagaataatcccatgattatcaaaaccctacatgctctTCCACAACATGGTTTACTTCCAAGATATCTCTTCAACTTTTTTTTCACTGTACTGAATTGATGACTAATAGTCATATTTTTGTTTTTGCTCAAAAAGTCTTGACTTGTAAATTTTTC-AGTTTCTCCTTTATCCACAGGTAA-CTCTTTCCTCATAAGGCGAATT--------------GCTTGCTTCCTTGAGTTCTGCTCTCAAAGATACCCTTCATTTTCTACCTAATATTAATAAC--TAATCATTCATTATTCCATTACTATGCTCTATAGTGTATACAATTTCTGTTCTTTGTCATGTCA---------TTAAC-------TATTTATTTGTTCCAGTAACGTATTCCATAAATATTGTACACATAAAAATTA----TGTTATTTTTATTGCTGTATGCTCAGCTGCCCAATAACAGGTTGAGGATTAACATATTTGTTAAATGTACAAATACATTCTTTCACAAATGTTAGTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44106842 1162 -  99891981 ttaatatgagaagtta---agtta-cacaatttttgaaaattataatggagtctcttggctgagcttt-aaaaaaaataacatttaggctaaaaagggaactg-ctacctctcct-aaaatcagaaagatgTTACAGTAAATCCCTATTCTCTAGAATTGTC-----------AGGAAGCACCTTTGTGATTATTTAATTTTGCTCTTGTGA-------GTGAGCCTGTGTAGTCATGGAACCATCAATTAGAATGATGGCTTTCTGATCCCAAAGTCATTCGTTCTGAAAACAATATTTTTCATAAATT------TGA-----GAAGTTTTGATCTT------------GCCA-TTC-CCGAGTAACTCTCTTAA-AAGAGGCATCAGCA-TGC-TTCAGTGACAGCTGTCACCTTCCAGTGctgagagtcatctttgagttct-ccatttc----actccctacactccaatttagctgcagttc-tcttggccagtcctatgacatacatccatggcctaatgacttctcaccactaataccactcatactaacagcattctcacctaagtcactacttttcttctct-ggattacaatagcctcccaatttattt-----gcccacata-acctattta-----ttctacgcagtgcaccagatacacccatttgaaatgcaaacacaatcatgttattctctggtgaaattatctcatatattcctatcgcatttaaaattaattcaaaataatctcatggttatcaaaaccctacatgctctTCTACAACATGGTTTAGTTCCAAGATATCTCTTCAACTTTTTTTTCACTGTACTGAATTG-TGAGTAATAGTCATATTTTTGTTTTTGCTCAAAAAGTCTTTACTTGTAAATTTTTC-AGTTTCTCCTTTATCCACCAGTAA-CTCTTTTCTCCTAAGGCTAATT--------------GCTTGCTTCCTTGAGTTCTGCTCTCAAAGATACACTTCATTTTCTACCTAATATTAATAATTTTGATCATTCATTATTCCATTACCATGCTCTATAGTGTACACAATTTCTGTTCTTTGTCATGTTA---------TTAACTAAA------TTATTTGTTTCAGTAATGTATCCCATAAATATCGTGCACATAAAAATTA----TGTTATTTTTATTGCTGTATGCTCAGCTGCCCAATAACAGTTTGAGGATTAACATATTAGTTAAATGGACAAATACATTCTTTCACAAATATTAGTTT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124532640 1166 - 198365852 TTAATATGAGAAGTT-----GTTA-CACAATTTTTGAAAATTATAATGGAGTCTCTTGACTGAGCTTT-AAAAAAAATAGTGTTTAAGCTAAAAAGGGAACTG-CTACCTCTCCT-AAAATCAGAATGATGTTACAATAATTCTCTGTTCTCTAGAATTGCA-----------TCGAAGCACTTTTATGATGATTTAATTTTGCTTTTGTGA-----GTCTGAGCCTGTGTAGTCATGGAACCATCAATTAGAATGATGGCTTTCTGATCCCAAAGTCATTCATTCTGAAAACAATATTTTTCATAAATTTGAAAGTGA-----gaagttttgatctt------------gcca-ttc-ccaagtaattctcctaataagaggcatcagca-tgc-ttcagtgacagctgtcaccttccagtgctgagagtcatccttgagttct-ccatttc----actccctacactccaatttagctgcagttc-tcttggccagtcctacgaaatacatccatgacctaacgacttctcaccactcataccactcataccaacagcattctcatctaagtcactaccttttttctctgggattacaatagcctcccaatttgttt-----gcccacata-acatattta-----ttctttacagtgtaccatatatatcccttcgaaatgcaaacacaatcatgttattctctggtgaaattatctcacatattcttattgcatttaaaattgattcaaaataatcccatgattatcaaaaccctacatactctTATATAGCATGGTTTAGTTCCAAGATAGCTCTTCAACTTTTTTTTCACTGTACTGAATTGGTGAGTAATAGTCATATTATTGTTTTTGCTCAAAAAGTCTTGATTTATACATTTTTC-AGTTTCTCCTTTATCCACAGGTAA-CTCTTTCCTCATAAGGCTAATT--------------CCTTGTTTCCTTGAAGTCTGCTCTCAAAGATTCTTTTCATTT----TCTAATATTAATAATTTTAATCATTCATTATTCTATTACTGTGTTCTATAGTGTATACAATTTCTGTTCTTTGTCATGTTA---------TTTATTAAC--AAAATTATTCATTTCAGTA----ATTACATAAAT-TTGTACACATAAAAATTA----TGTTATTTTTATTGCTATATGCTCAGCTGACCAATAACAGTTTGAGGATTAATATATTTGTTAAATGGACAAATACATTCTTTTACAAATATCAGTTT
i rheMac3.chr3                 I 3 C 0
s macFas5.chr3                 124983824 1170 - 192294377 TTAATATGAGAAGTT-----GTTA-CACAATTTTTGAAAATTATAATGGAGTCTCTTGACTGAGCTTT-AAAAAAAATAGTGTTTAAGCTAAAAAGGGAACTG-CTACCTCTCCT-AAAATCAGAATGATGTTACAATAATTCTCTGTTCTCTAGAATTGCA-----------TCGAAGCACTTTTATGATGATTTAATTTTGCTTTTGTGA-----GTCTGAGCCTGTGTAGTCATGGAACCATCAATTAGAATGATGGCTTTCTGATCCCAAAGTCATTCATTCTGAAAACAATATTTTTCATAAATTTGAAAGTGA-----GAAGTTTTGATCTT------------GCCA-TTC-CCAAGTAATTCTCCTAATAAGAGGCATCAGCA-TGC-TTCAGTGACAGCTGTCACCTTCCAGTGctgagagtcatccttgagttct-ccatttc----actccctacactccaatttagctgcagttc-tcttggccagtcctacgaaatacatccatgacctaacgacttctcaccactcataccactcataccaacagcattctcatctaagtcactaccttttttctctgggattacaatagcctcccaatttgttt-----gcccacata-ccatattta-----ttctttacagtgtaccatatatatcccttcgaaatgcaaacacaatcatgttattctctggtgaaattatctcacatattcttattgcatttaaaattgattcaaaataatcccatgattatcaaaaccctacatactctTATATAGCATGGTTTAGTTCCAAGATAGCTCTTCAACTTTTTTTTCACTGTACTGAATTGGTGAGTAATAGTCATATTATTGTTTTTGCTCAAAAAGTCTTGATTTATACATTTTTC-AGTTTCTCCTTTATCCACAGGTAA-CTCTTTCCTCATAAGGCTAATT--------------CCTTGTTTCCTTGAAGTCTGCTCTCAAAGATTCTTTTCATTT----TCTAATATTAATAATTTTAATCATTCATTATTCTATTACTGTGTTCTATAGTGTATACAATTTCTGTTCTTTGTCATGtta---------tttattaac--taaattattcatttcagtaatttattACATAAAT-TTGTACACATAAAAATTA----TGTTATTTTTATTGCTATATGCTCAGCTGACCAATAACAGTTTGAGGATTAATATATTTGTTAAATGGACAAATACATTCTTTCACAAATATCAGTTT
i macFas5.chr3                 I 3 C 0
s papAnu2.chr3                 122248075 1168 - 180432695 TTAATATGAGAA--------GTTA-CAcaagttttgaaaattataatgGAGTCTCTTGactgagcttt--aaaaaaata--gtttaagcTAAAAAGGGAACTG-CTACCTCTCCT-AAAATCAGAATGATGTTACAATAATTCTCTGTTCTCTAGAATTGCA-----------TCGAAGCACTTTTATGatcatttaattttgcttttgtga-----gTCTGAGCCTGTGTAGTCATGGAACCATCAATTAGAATGATGGCTTCCTGATCCCAAAGTCGTTCGTTCTGAAAAcaacatttttcataaatttgaaaGTGA-----GAAGTTTTGATCTT------------GCCA-TTC-CCAAGTAATTCTTCTAATAAGAGGCATCAGCA-TGC-TTCAGTGACAGCTGTCACCTTCCAGTGCTGAGAGTCATCCTTGAGTTCT-CCATTTC----ACTCCCTACACTCCAATTTAGCTGCAGTTC-TCTTGGCCAGTCCTATGAAATACATCCATGACCTAACGACTTCTCACCACTCATACCACTCATACCAACAGCATTCTCATCTAAGTCACTACCTTTTTACTCTGGGATTACAATAGCCTCCCAATTTGTTT-----GCCCACATA-ATGTATTTA-----TTCTTCACAGTGTACCATATATACCCCTTCGAAATGCAAACACAATCATGTTATTCTCTGGTGAAATTATCTCACATATTCCTATCACATTTAAAATTGATTCAAAATAATCCCATGATTATCAAAACCCTACATACTCTTTTATAGCATGGTTTAGTTCCAAGATAgctcttcaacttttttttcactGTACTGAATTGGTGAGTAATAGTCATATTATTGTTTTTGCTCAAAAAGTCttgatttatacatttttc-agtttctcCTTTATCCACAGGTAA-CTCTTTCCTCATAAGGCTAATT--------------CATTGTTTCCTTGAAGTCTGCTCTCAAAGATCCCTTTCATTTTCTatctaatattaataattttaatcattCATTATTCCATTACTGTGTTCTATAGTGtatacaatttctgttctttgtcaTGTTA---------TTTATTAAC--TAAATTATTCGTTTCACTAATTTATTCCATAAAT-ttgtacacataaaaatta----tgttatttttattgctatatgcTCAGCTGACCAATAACAGTTTGAGgattaatatatttgttaaatggacaaatacattctttcacaaatattagttt
i papAnu2.chr3                 I 55 I 251
s chlSab2.chr21                121504477 1171 - 127223203 TTAATATGAGAAGTTA---AGTTA-CACAATTTTTGAAAATTATAATGGAGTCTCTTGACTGAGCTTT--CAAATAATAGCGTTTAAGCTAAAAAGGGAGCTG-CTACCTCTCCT-AAAATCAGAATGATGTTACAATAATTCTCTGTTCTCTAGAATTGCA-----------CTGAAGCACTTTTATGATGATTTAATTTTGCTTTTGTGA-----GTCTGAGCCTGTGTAGTCATGGAACCATCAATTAGAATGATGGCTTTCTGATCCCAAAGTCTTTCGTTCTGAAAACATTATTTTTCATAAATTTGAAAGTGA-----GAAGTTTTGATCTT------------GCCA-TTC-CCAAGTAATTCTCCTAATAAGAGGCATCAGCA-TGC-TTCAGTGACAGCTGTCACCTTCCAGTGctgagagtcatccctgagttct-ccatttc----actccctacactccaatttagctgcagttc-tctcggccagtcctatgaaatacatccatgacctaacaacttctcaccactcatcccactcataccaacagcattctcatctaagtcactaccttttttctctgggattacaatagcctccaaatttgttt-----gcccacATA-ACGTATTTA-----TTCTTTACAGTGTACCGTATATACACCTTCGAAATGCAAACACAATCATGTTATTCTCTGGTGAAATTATCTCACATATTCCTATTGCATTTAAAATTGATTCAAAATGATCCCATGATTATCAAAACCCTACATACTCTTATATAGCATGGTTTAGTTCCAAGATAGCTCTTCAACTTTTTTTTCACTGTACTGAATTGGTGAGTAATAGTCATATTATTGTTTTTGCTCAAAAAGTCTTGATTTATACATTTTTC-AGTTTCTTCTTTATCCACAGGTAA-CTCTTTCTTCTTAAGGCTAATT--------------CCTTGTTTCCTTGAAGTCTGTTCTCAAAGATCCCTTTCATTT----TCTAATATTAATAATTTTAATCATTCATTATTCCATTACTGTGTTCTATAGTGCATACAATTTCTGTTCTTTGTCATGtta---------tttattaac--taaattattcatttcagtaatttattCCATAAAT-TTGTACACATAAAAATTA----TGTTATTTTTATTGCTATATGCTCAGCTGACCAATAACAGTTTGAGGATTAATATATTTGTTAAATGGACAAATACATTCTTTCACAAATATTAGTTT
i chlSab2.chr21                I 3 C 0
s calJac3.chr8                  20043141 1196 + 128169293 TTAACATGACAA--------GTTACCAAAATTATTGAAAATTATAATGGTGTCTCCTGGCTGAGCTTA-GAAAAAA--AACATTTAGGCTAAAAAGGGAACTG-CCACCTCTCCT-AAAATCAGAATGCTGTTACAGTAATTCTCTATTCTCTAGAATTGTC-----------TAGAAGCAGCTTTGTGATGATTTAATTTTGCTCTTGTGA-----GTTCGAACTTCTGTAGTTATGGAACCATCAATTAGAATGATAGCTTTCTGATCCCAAAGTCATCAGTTCTGAAAACAAAATTTTTTGTAAATTTGAAAGTGAGTTTTGATCTTCTGATCTT------------GCCACTCC-CCAAGTAACCCTCGTATTAAGAGGCATCAGCGTTGC-TTCAGTGACAGCTGCCATATTCCAGTGctgagagtcacctttgctttct-ccatttt----actccctacactctgatttagctgcagttc-tcttggccagtcctttgaaatacatccatggcctaaccacttctcaccactcataccacttacattaacagcattctcatctaagccacaaccttttttctct-ggactacaatagcctcttaatttattt-----gtgcactta-acctattta-----ttctccacagtgcaccagatatacccctttgaagtgcaaacacaatcatgttattctgtggtgaaattatctcatgtattcctatcgcattttaaattaattcaaaataatttcatgattatcaaaaccctacatgctcttatcTAACATGGTTTAATTCCAAGATATGTCTTCAACTTTTTATTCACTGTAGTGCATTGATGAGTAATAGTCATATT-TTCTTTTTGCTCAAAAAGTCTTGCCATATAAATTTTTC-AGTTTCTCCTTTATTCACAGGTCA-GTCTTTCCTCATAAATCTAATTCCTTTATGAGGAAAGCTTGCTTCCTTGAGGTCTATTCTCAAATATCCCCTTCATTTTCTATCCAAAATTAATAACTTTAATCATTCATTATTCCATTACTATGCTCTGTGGTGTATATAATTTCTGTTCTTTGTGATGTTA---------TTTAGTATTTATTGATTATTTGTTTCTGTAATATATTCCATACATATTGTGCATATAAAATTTAGGTTTTTTTTTTTTTTTGCTATATACTCAGCTGCCCAATAACAGTTTGAGGATTAACATATTTGTAAAATGGACAAATGCACTCTTTCACAAGTATTAGTTT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4069551 1197 +  55844845 TGAATGCGAGTAATTAAACATGTA-CATAATTGTTGGAGATGATGGTGCAATCTCTTGGCTGACCTTT----AAATATGAATCTCCGGCTAGAAAGGAAGTTACCTACCTCTGTC-CAAACCAGAA-----TTGCACTAATT-TCTA-TCTCCAGAATTACCTTCTGGAGTAATTTAATTACTTTCATGGTAATTTAA-TTTGCTCTCATGGATTATATCTGAGCCTGTACAGTCAT-GAGCTACACAATGGAATGCTCGCTTCCTGACTGCAAAATCATTGGTTCTGGAGACAACacttgccatgaatctccaaatta-----gaatttattattttccttttgaaccagtta-ttctccaagca--tcttatagtaaaagtcatcatca-ttctttcactgaatgggctcatcttctagagcttggagtcatccttgaattctcccatttctcttactcccttca-tgcaatttatccatagctcttctttgcacttcctttaaaacgtatccatgtactgaccacttgccaccacttac-cctctcac--------cattc-aatccaagtcactaccttttttctca-ggatcactagagcccccagacttgtttttctggctcttctgtacccgtttactcttttctccaaagtgtaccag--------tgttgaaatataaacaagatcatgctatcccctggtaaacttatctaatgtgttcttatcacatttaaagttaattcaaaataacaccgtggttgacaagaccctacatgctctTTTAAGTTATGGTCTGTTTCTGGGATGTCTCTTTGACTTGTCTTT-ACTGTGCTGAGTCA--TAGGGATCCTCACATCTTTGCCCTTGCTCAAAAACTCTTGACTCATACATTTTTTAAATTGTTCCTTTATCCACAGAAGCTCTCTTTCCCCTTATCGGGCACT--------------CCTTGCTTTTCGAAAGTCTACTCTCAAAAG----CTTTATTTTCTGTGTAAATATAATAGTTTTAaacattcattacccctttacaatgctctattatgtatacaacttctagtctttgtaatattaattgatcagttaattaat---tactaatttgtttatgtattttattacataaactctatgaggatagacaata----agtcatttgtattgttgtatgctcaggtccccagtcacagcttggcagttaatgtatttgttaaatggatgaatAAATTATTTCACAAGTACCAGTGT
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=282017.000000
s hg38.chr14_KI270725v1_random     97559 87 +    172810 AATAATTTTATATT-AAACTCCCTCTATATTTACAATATGAATTAGATCATTCAGAATAAACATTCCAGTGGAAAAAACTAAACAATT
s panTro4.chrUn_GL393527          173316 87 +    341619 AATAATTTTATATT-AAACTCCCTCTATACTTACAATATGAATTAGATAATTCAGAATAAACATTCCATTGGAAAAAACTAAACAATT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5669258 87 +  72422247 AATAATTTTATATT-AAACTCCCTATATACTTACAATATGAATTAGGTAATTCAGAATAAACATTCCATTGGAAAAAACTAAACAATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44108004 85 -  99891981 AATAATTTTATATT-AAACTCCCTATATACTT--AATATGAATTAGATAACTCAGAATAAATATTCCATTGGAAAAAACTAAACAATT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124533806 87 - 198365852 AAAAATTTTATATT-AAACTCCCTATATACTTAAAATgtgaattagataattcagaataaacattccattggaaaaaactaaacaatt
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124984994 87 - 192294377 AAAATTTTTATATT-AAACTCCCTATATACTTAAAATGTGAATTAGATAATTCAGAATAAACATTCCATTGGAAAAAACTAAACAATT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122249494 87 - 180432695 aaaaattttatatt-aaactcCCCATATACTTAAAATATGAATTAGATAATTCAGAATAAATATTCCATTGGATAAAACTaaacaatt
i papAnu2.chr3                 I 251 C 0
s chlSab2.chr21                121505648 87 - 127223203 AAAAATTTTATATT-AAACTCCCTATATACTTAAAATATGAATTAGATAATTCAGAATAAATATTCCATTGGATAAAACTAAACAATT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20044337 87 + 128169293 CATAATTTTATATT-AAACTCCCTAAATACTTGCAATATGAATTAGATAATTCAGAATAAACATTCTATTGGAAAAAACTAAGCAATA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4070748 86 +  55844845 AGTAATTTTAAATCAAAACTTCCC--ATAATTGCAATGTTGACTAGAAAATTCAAAATAAGCATTTCACCAAAGAAAATTGAACAATT
i canFam3.chr18                C 0 I 4772
e gorGor3.chr9                  49361204 1454 + 121947112 I

a score=612921.000000
s hg38.chr14_KI270725v1_random     97646 230 +    172810 TG-TTATAAAACATCCTTAAAAGCATCAGAAAGTTAATA--------CAGCAATGAAGAATTACAGGACCAAATTAAGAATGGTATGCAAGCCTGTTTGTGAGGCTTATGTTTGGGTAATCTCTTTACTTAGAG-TGACTGTAAATCTCAAAAGAGGATTAAACTGAGA-AATAACTCTATCAACTCACATGGTAAGGGTATTTAAACATATCTTAGTAATGGAGAAAATTGaaagaaaag
s panTro4.chrUn_GL393527          173403 229 +    341619 TG-TTGTAAAACATCCTTAAAAGCATCAGAAAGTTAATA--------CAGCAATGAAGAATTACAGGACCAAATTAAGAATGGTATGGAAGCCTGTTTGTGAGGCTTATGTTTGGGTTATCTC-TTACTTAGAG-TGACTATAAATCTCAAAAGAAAACTAAAGGGACA-AATAACCATATCAACTCACATGGTAAGGGTATTTAAACATCTCTTAGTAACTGAGATAATTgaaagaaaag
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5669345 225 +  72422247 TG-TTATAAAACATCCTTAAAAGCATCAGAAAGTTAATA--------CAGCAATGAAGAATTACAGGACCAAATTAAGAATGGTATGGAAGCCTGTTTGTGAGGCTTATGTTTGGGTTATCTC-----TTAGAG-TGACTATAAATCTCAAAAGagaactaaagggaga-aataaccatatctactaacatggtaagggtatttaaacatctcttagtaattgagaaaaTTgaaagaaaag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44108089 230 -  99891981 TG-TTATAAAACATCCTTAAAAGTGTCAGAAAGTTAATA--------TAGCAATGAAGAATTACAGGACCAAATTAAGAATGGTATGTAAGCCTGTTTGTGAGGCTTATGTTTGGGTTATCTCTTTACTTAAAG-TGACTATAAATCTCAAAAAAGAACTAAAGGGAGA-AATAACCATATCTACTAATGCAGTAAGGGTATTTAAACATCTCTTAGTAATTGagaaaattgaaagaaaag
i nomLeu3.chr17                C 0 I 4
s rheMac3.chr3                 124533893 231 - 198365852 tgtttaaaaaaaagccttaaaagcatcagaaagttaata--------cagcaatgaagaattacagaaccaaattaagaatggtatggaagtctgtttgtgagccttatgtttggGTTATCTCTATACTTAAAG-TGATGATAAATCTCAAAAGAGAAATGAAGGGAGA-AATAACTATATCTACTAACACGGTAAGGGTATTTAAACATCTCTTAGTAATTGAGAAAATTgaaagaaaag
i rheMac3.chr3                 C 0 I 4
s macFas5.chr3                 124985081 231 - 192294377 TGTTTAAAAAAAAGCCTTAAAAGCATCAGAAAGTTAATA--------CAGCAATGAAGAATTACAGAACCAAATTAAGAATGGTATGGAAGTCTGTTTGTGAGCCTTATGTTTGGGTTATCTCTATACTTAAAG-TGATGATAAATCTCAAAAGAGAAATGAAGGGAGA-AATAACTATATCTACTAACACGGTAAGGGTATTTAAACATCTCTTAGTAATTGAGAAAATTGAAAGAAAAG
i macFas5.chr3                 C 0 I 4
s papAnu2.chr3                 122249581 230 - 180432695 tg-ttaaaaaaaatccttaaaagcaTCAGAAAGTTAATA--------CAGCAATGAAGAATTACAGGACCAAATTAAGAATGGTATGGAAGTCTGTTTGTGAGCCATATGTTTGGGTTATCTTTATACTTAAAG-TGACTATAAATCTCAAAagagaactgaagggaga-aataactATATCTACTAACATGGTAAgagtatttaaacatttcttagtaattgagaaaattgaaagaaaag
i papAnu2.chr3                 C 0 I 4
s chlSab2.chr21                121505735 230 - 127223203 TG-TTAAAAAAAATCCTTAAAAGCATCAGAAAGTTAATA--------CAGCCATGAAGAATTACAGGACCAAATTAAGAATGGTATGGAAGTCTGTTTGTGAGCCTTATGTTTGGGTTATCTTTATACTTAAAG-TGACTATAAATCTCAAAAGAGAACTGAAGGGAGA-AATAACTATATCTACTAACATGGTAAGGGTATTTAAATATTTTTTAGTAATTGagaaaattgaaagaaaag
i chlSab2.chr21                C 0 I 4
s calJac3.chr8                  20044424 234 + 128169293 TT-TTATAAAACATTCTT-AAAGCATCAGAATGTTAATAGAACAGTGAAGCAATGAAGAATTACA-----AGATTAAGAATGGTATGGACGTCTGTTTATGATTCTTATATTTGGGTTATCTCTTTACTCAGAGTTGAGTATCAATCTCAAAAGGGACCTGAAGACAGAGAAAAACCGTATCTACTAACACAGTAAAAGTATTTAAACATCTCTTAGATATTGAGAAAATTTAAAGTaaag
i calJac3.chr8                 C 0 I 1
e gorGor3.chr9                  49361204 1454 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I

a score=-7596.000000
s hg38.chr14_KI270725v1_random     97876 5 +    172810 ----aaaaa
s panTro4.chrUn_GL393527          173632 2 +    341619 ----ag---
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93791905 2 - 147764049 ----aa---
i gorGor3.chr10                I 41112 I 357
s ponAbe2.chrUn                  5669570 1 +  72422247 ----a----
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44108323 1 -  99891981 ----a----
i nomLeu3.chr17                I 4 C 0
s rheMac3.chr3                 124534128 1 - 198365852 ----a----
i rheMac3.chr3                 I 4 C 0
s macFas5.chr3                 124985316 1 - 192294377 ----A----
i macFas5.chr3                 I 4 C 0
s papAnu2.chr3                 122249815 1 - 180432695 ----a----
i papAnu2.chr3                 I 4 C 0
s chlSab2.chr21                121505969 1 - 127223203 ----a----
i chlSab2.chr21                I 4 C 0
s calJac3.chr8                  20044659 5 + 128169293 aaaaa----
i calJac3.chr8                 I 1 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I

a score=978244.000000
s hg38.chr14_KI270725v1_random     97881 355 +    172810 agataaagggagaa--agagaaacagagcgaaagggataatgaaggagagaaagaagaagagaaaggaagaggaagaaaagtaaagaggagga---gggagagggagg----aagaAAGGTG--AAAAGAAAGAATGCTAAAGTTTTTAACAACATAATTTATCCttctagaatatgaatgttggtctatttgatgatgtcccacagattccttagtctctgctcatttttta------------tctgtttctcagagtcaatattttcccttttcttatcttcaagctcatgacttcttctgtgtgtgcaaatatactcttaaatccctctggtgatttttaaattttgatcgttgtagttttccactccagaatt
s panTro4.chrUn_GL393527          173634 355 +    341619 ----aaagggagaa--agagaaacagagcaaaagggataatgaaggagagaaagaagaagagaaaggaagaggaagaaaagtaaaaaggagga---aggagagggaggaagaaagaaaggtg--aaaagaaagaaTGGTAAAGTTTTCAATAACATAATTTATCCttctagaatatgaatgttggtctatttgatgatgtcccacagattccttagtctctgctcatttttta------------tctgtttctcagagtcaatatttcccattttcttatcctcaagctcatgacttcttccgcgtgtgcaaatatactcttaaatccctctggtgattttaaaatttttatcgttgtagttttccactccagaatt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5669571 355 +  72422247 agagaaagggagaa----agaaacagaacaaaagggataatgaaggagagaaagaagaagagaaaggaagaggaagaaaagtaaagaggggga---gggaggaaga------aagaaaggtg--aaaagaaagaaTGGTAAAGTTTTTAACAACATAATTTATCCTTCTGGaatatgaatgttggtctatttgatgatgtcccacagattccttagtctctgctcattttttatt--------tttctgtttctcagagtcagtattttccattttcttatcttcaagttcatgacttcttctgtgtgtgcaaatatactcttaaatccctctggtgatttttaaatttttatcattgtagtttcctactccagaatt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44108324 355 -  99891981 agagaaagggagag----agaaacagagcaaaagggataatgaaagagagaaagaagaagagaaaggaagaggaagaaaagtaaaaaggagga---ggaaggg---------gagggagg------aagaAAGAATGGTAACGTTTTTAACAACATAATTTATCCTTTTAGaatatgaatgttggtctatttgatgatgtcccacagattccttagtctctgttcattttttatttgttattctttctgtttctcagagtcaatattttccattttcttatcttctagctcatgacttcttctgtgtgtgcaaatatactcttgaatccctctggtgatttttaaatttttatcattgtagttttcaactccagact-
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124534129 376 - 198365852 agagaaagggagggagagagaaacagagcaaaagggataatgaaggagagaaagaagaagagaaaggaagaggaaaaaaagtaaggaggaggaaggaggagagggaggaagagagaaaggtg--aaaagaaagaaTGGTAAAGTTTTTAACAACATAATTTATCCTTTTAGAATATTAatgttggtctttttgatgatgtcccacagattccttagtctctgttcattttttatgtgttattctttctgtttgtcagagtcaatattttccattttcttatcttcaagctcatgacttcttctgtgtgtgcaaatatactcttgaatccctctggtgatttttaaatttttatcattgttgttttcagttctagaatt
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124985317 377 - 192294377 AGAGAAAGGGAGGGAGAGAGAAACAGAGCAAAAGGGATAATGAaggagagaaagaagaagagaaaggaagaggaaaaaaagtaagaaggaggaaggaggagagggaggaagagAGAAAGGTGA-AAAAGAAAGAATGGTAAAGTTTTTAACAACATAATTTATCCTTTTAGaatatgaatgttggtctttttgatgatgtcccacagattccttagtctctgttcattttttatgtgttattctttctgtttgtcagagtcaatattttccattttcttatcttcaagctcatgacttcttctgtgtgtgcaaatatactcttgaatccctctggtgatttttaaatttttatcattgttgttttcagttctagaatt
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122249816 371 - 180432695 agagaaagggagagagagagaaacggagcaaaagggataatgaaggagagaaagaagaagagaaaggaagaggaagaaaagaaaggaggatga---gggagagggaggaagaaagaaaggtg--aaaagaaagaaTGGTAAAGTTTTTAACAACGTAATTTATCCTTTTAGAATATGAATGTTGGTCTTTTTGATGATGTCCCACAGATTCCTTagtctctgttcattttttatgtgttattctttctgtttctc--agtcaatattttccattttcttatcttcAAGCTCATGGCTTCTTCTGTGTGTGCAAATATACTCTTGAATCCCtttggtgatttttaaatttttatcattgttgttttcagttctagaatt
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121505970 373 - 127223203 agagaaagggagagagagagaaacggagcaaaagggataatgaaagagagaaagaagaagagaaaggaagaggaagaaaagtgaggaggacta---gggagagggaagaagaaagaaaggtg--aaaagaaagaATGGTAAAGTTTTTAATAACATAATTTATCCTTTTAGaatatgaatgttggtctttttgatgatatcccacagattccttagtctctgttctttttttatgtgctattctttctgtttctcagagtcaatattttccattttcttatcttcaagctcatgacttcttctgtgtgtgcaaatatactcttgaatccctctggtgatttttaaatttttatcattgttgttttcagttctagaatt
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20044664 364 + 128169293 agagaaagggaaag--aaaaaaacagag----agggataatgagggagaga---aagaagagaaaggaagaggaagaaaattaaggaagagga---gggagatagaggaagaaagaaagGTGATAAAAAAAAGAATGTTAAAGTTTTTAACAACAGAATTTATTGGTTTTGAATTTGAatgttggtctatttcttgatgtcccacagattccatagtctctgttcattttttatttgttattctttctgtttctcagagtcagtattttctattttcttatcttcaagctcatgactt-ttctgtgt-cacaaatagactcttgagtccctctggtgaattttttatttttggcattgtatttttcagctccagaatt
i calJac3.chr8                 C 0 C 0
e gorGor3.chr10                 93791907 357 - 147764049 I
e canFam3.chr18                  4070834 4772 +  55844845 I

a score=3459.000000
s hg38.chr14_KI270725v1_random     98236 2 +    172810 tc
s panTro4.chrUn_GL393527          173989 2 +    341619 tc
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr10                 93792264 2 - 147764049 tc
i gorGor3.chr10                I 357 N 0
s ponAbe2.chrUn                  5669926 2 +  72422247 tc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44108679 2 -  99891981 tc
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124534505 2 - 198365852 ac
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124985694 2 - 192294377 ac
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122250187 2 - 180432695 ac
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121506343 2 - 127223203 ac
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20045028 2 + 128169293 tc
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I

a score=127576.000000
s hg38.chr14_KI270725v1_random     98238 59 +    172810 tgctatctc--tgttgatattcctacattttaata-ttttttctgaatcctttatttctttg
s panTro4.chrUn_GL393527          173991 59 +    341619 tgctatctc--tgttgatattcctacattttaata-ttttttctgaatcctttatttctttg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5669928 58 +  72422247 tgttatctctttgttgatattcctactttttaatatttttttctaattcctttatttc----
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44108681 62 -  99891981 tgttatctctttgttgatattcttactttttaatatttttttctgattcctttatttctttg
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124534507 59 - 198365852 tg-tatctctttcttgatattcttactttttcata--tttttctaattcctttatttctttg
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124985696 59 - 192294377 tg-tatctctttcttgatattcttactttttcata--tttttctaattcctttatttctttg
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122250189 59 - 180432695 TG-TAtctctttcttgatattcttactttttcata--tttttctaattcctttatttctttg
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121506345 59 - 127223203 tg-tatctctttcttgatattcttactttttcata--tttttctaattcctttatttctttg
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20045030 54 + 128169293 tg-tatctctttgttgatattcttagttttccgta--ttttt-----ttttttttttttttg
i calJac3.chr8                 C 0 I 2840
e canFam3.chr18                  4070834 4772 +  55844845 I

a score=2142505.000000
s hg38.chr14_KI270725v1_random     98297 954 +    172810 tttatgttttccttgtgacatttgagtataattaagagagttgttttaaagtctttgtctagtaagtttgaagtctgggtttccttagagatattctctgtcaatttgttttgttcctttgaatgagccacactttcccattctttgtatgccttggaactttttttgaaaactgggc------attataataattataattactatgtggttactctgtaaatcagacccccccccccacaaacacagtaatgttttggggttttaagttttctttacttattatattgttaagga-ttttttttttactgaaattttccaaagtga-tttacaaaactgtttgctttataaggtgtggtcaccgaagtctttttgtttccttgacaaatgttaagctaatgttttgacagtgattttcttgtatgtcaggaactaagcaa--acaggcaaatacaacaaaaacgaaaagaaaaacaagtaatcattatccagcaaaatatgtctctaggccatgcagactggcttcgtgctgggttctttaaagccgaaacaaagtgtgtgttcactcttgcactgagtgaagttcaagttcactcttgcacagagcttgcactgaggagagggatccgccaaggtaaaagtgtagggtcttcttatgacatttgtcagcatgtggcttaacctatgcatacatgtgactttctagactctcttgtgtacgtgaatgattttgaatgtcttagttttccaaatactcttctccaacttttcttcctgtgctgaaggtgatctactatatgtgtaagctctaatttttgccctaagcatctgtggtttgttaggtctccttgcagagtttcttgataatgtccattccttatctgttctgtattctagcaacacagaaaaaacaaaagcctttcatgagtcctttaggtatcccccacaccagtcagaacaga
s panTro4.chrUn_GL393527          174050 950 +    341619 tttatgttttccttgtgacatttgagtataattaagagagttgttttaaagtctttgtctagtaagtttgatgtctgggtttccttagagat-ttttctgtcagtttgttttgttcctttgaatgagccatactttcccgttctttgtatgccttgtaactttttttgaaaactgggc------attataataattataattactatgtggttactctgtaaatcaga--gcctcccccacaaacacaataatgttttggggttttaaattttctttacttattatattgttaaggatttttttttttagtgaaattttccaaagtga-tttacaaaactgtttgctttataaggtgtggtcaccgaagtctttttgtttccttaacaaatgttaagctaatgttttgacagtgattttcttgcatgtcaggaactaagcaa--acaggcaaatacaacaaaaacaaaaagaaaaacaagtaatcattgtccagcaaaatatgtctctaggccatgcagactggctttgtgctgggttctttaaagtcaccacaaagtgtgtgttcactcttgcactgagtgaagttcaagttcactcttgcacagagcttgcactgagaggagggatcggccagggtaaaagtgtagggtcttcttatgacatttgtcagcatgtggcttaacctgtgcatacatgtgactctctagactctcccatgtacgtgaatgattttgaatgtcttagttttccaaatactcttctccaagttttcttcctgtgatgaaggtgatctactatatgtgtaaactctaatttttgccctaagcatccgtggtttgttaggtctccttgcagagtttcttaaaaacgtccattccttatctgttctttattctagcaacacagaaaaa--aacagcctttcatgagtcctttagatatcccccagacctgtctgaacaga
i panTro4.chrUn_GL393527       C 0 I 68642
s ponAbe2.chrUn                  5669986 942 +  72422247 tttatgttttctttttgacatttgagtataattaagagagttgtttaaaagtcttcgtctagtaagtttgatgtctgggtttccttagagatattttctgtcaatttattttattcctttgaatgagccatactttcccattctttgtatgccttgtaactttttttgaaaactggac------attataataattataattactatgtggttactctgtaaatcaga--cccccccccacaaacacactaatgttttgtggttctaaattttatttact-----tattgttaaggt-ttttatttttagtgaaattttgcaaattga-tttacaaaactgtttgctttataaggtgtggtcaccgaaatctttttgtttccttaacaaatgttaagctaatgttttgacagtgattttcttgtatgtcaggaactaagcaa--acaggcaaatacaacaaaaacaaaaagaaaaacaagtaatcattatccaggaaaatatatctctaggccatgcagactggctttgtgctgggttctttgaagccggcacaaagtgtgtgttcactcttgcactgagtgaagttcgagttcactcttgcacagagcttgcactgaggggaggggtcagccaaggtaaaagtgtggggacttcttatgacatttgtcagcatggggcttaacctatgcatacatgtgactttctagactctcccatgtacgtgaatgattttgaatgtcttagttttccaaatactctt---caacttttcttcctgtgctgaagaggatctactatatgtgtaaactctaatttttgccctaggcatctgtggtttgttaggtctccttgcagagtttcttaataatatccattccttatctgttctgtattctagcaacacagaaaaa--aaaagcctttcattagtccttcaggtatcccccagaccagtcagaacaga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44108743 946 -  99891981 tttatgttttccttttgacatttgagtataattaagagagttgttttaaagtctttgtctagtaagtttgatgtctgggtttccttagagatattttctgtcaatttattttgttcctttgaatgagccatactttcccattcttggtatgcctcataac-ttttttgaaaactggac------attataataattataattactatgtggttactctgtaaatcaga--ccctcccctacaaacacactaatgttttgtggttttaaattttatttacttattatattgttaagg--ttttttttttagtgaaattttccaaagtgattttacaaaactgtttgctttataaggtgtggtcactgaagtctttttgtttccttaacaaatgttaagctaatattttgacagtgattttcttgtatgccaggaactaagcaaacacaagcaaacacaacaaaaacaaaaagaaaaacaagtaatcattatccagcaaaatatgtctctaggccatgcagactggctttgcgctgggttctttgaagctggcacaaggtgtgtgttcactcttgcactgagtgaagttcaagttcactcttgcacagagcttgcactgaggggcgggatcagccaaggtaaaa-tgtagggtcttcttatgacatttgtcagcatgtggcttaacctatgcatacatgtgactttctagactctcccatgtacatgaataattttgaatgtcttagttttccaaatactcttctccaacttttcttcctgtgctgaaggtgatctactatatgtgcaaactctaatttttgccctaagcatctgtagtttgttaggtctcctt---gagtttcttaataatgtccattccttatctgatctgtattctagcaacacagcaaa---aaaagcctttcatttgtcctttaggtatctcccagaccagtcagaacaga
i nomLeu3.chr17                C 0 I 2
s rheMac3.chr3                 124534566 952 - 198365852 tttatgttttccttttgacatttgagtataattaagagagttgttataaagtctttgtctagtaagtttgatgtctgggtttccttatagatattttctgtcaatttattttgttcctttgaatgagccatactttccaattctttgtatgccttgtaactttttttgaaaactggac------attataataattataattactatgtggttactctgtaaatcagt-cccccccccaacaaacatactgatg-ttttttattttaatttttatttacttattatattgttaaggttagttttttttagtgaaattttccaaagtgattttacaaaactgcttgctctatcaggtgtgatcactgaagtcattttgtttccttaactaatgttaagctatta-tttgacagtgattttctactatatcaggaactaagcaaacacaggtaaacacagcaaaaacaaaaagaaaaacaagtaatcattagccagcaaaatatgtgtctaggccacgcagactggctttgtgctgggccctttgaagctggcagaaagtgtgtgttcgctcttgcactgagtgaagttcaagttcactcttgcacagaacttgcactgagggtagggatcagccaaggtaaaagtgtagagtcttcttatgacatttgtcagcttgtggcttaacctatgcatacatgtgactttctaggctctcccatgtacgtgaatgattttgaatgtcttaattttccaaatactcctctccaacttttcttcccgtgctgaaggtgatctattatatgtgtaaactctaatttttgccctaaggatctgtagtttgttaggtctctttgcagagtctcttcattatgtccattccttatctgttctgcattctagcaacacagaaaa---aaatgcctttcattagtcttttaggtatctcccagaccagtcagaacaga
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124985755 951 - 192294377 tttatgttttccttttgacatttgagtataattaagagagttgttataaagtctttgtctagtaagtttgatgtctgggtttccttatagatattttctgtcaatttattttgttcctttgaatgagccatactttccaattctttgtatgccttgtaactttttttgaaaactggac------attataataattataattactatgtggttactctgtaaatcagt--ccccccccaacaaacatactgatg-ttttttattttaatttttatttacttattatattgttaaggttagttttttttagtgaaattttccaaagtgattttacaaaactgcttgctctataaggtgtgatcactgaagtcattttgtttccttaactaatgttaagctatta-tttgacagtgatttTCTACTATATCAGGAACTAAGCAAACACAGGTAAACACAGCAAAAACAAAAAGAAAAACAAGTAATCATTAGCCAGCAAAATATGTGTCTAGGCCACACAGACTGGCTTTGTGCTGGGCCCTTTGAAGCTGGCAGAAAGTGTGTGTTCGCTCTTGCACTGAGTGAAGTTCAAGTTCACTCTTGCACAGAActtgcactgagggtagggatcagccaaggtaaaagtgtagagtcttcttatgacatttgtcagcttgtggcttaacctatgcatacatgtgactttctaggctctcccatgtacgtgaatgattttgaatgtcttaattttccaaatactcctctccaacttttcttcccgtgctgaaggtgatctattatatgtgtaaactctaatttttgccctaaggatctgtagtttgttaggtctctttgcagagtctcttcattatgtccattccttatctgttctgcattctagcaacacagaaaa---aaatgcctttcattagtcttttaggtatctcccagaccagtcagaacaga
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122250248 958 - 180432695 tttatgttttccttttgacatttGAGTATAATTAAGAGAGCTGTtataaagtctttgtctagtaagttTGATGTCTGGGTTTCCTTAGAGATATTTTCTGtcaatttattttgttcctttgaatgAGCCATACTTTCCAATTCTTTGTATGCCTTGTAACtttttttgaaaactggacattataattataataattataattactatGTGGTTACTCTGTAAATCAGA--CCACCCCCCACAAACACActaatgtttttttattttaaattttatttacttatcatattgttaaggttaggtttttttagtgaaattttccaaagtgattttacAAAACTGTTTGCTCTATAAGGTGTGATCACTGAagtctttttgtttccttaactAATGTTAAGCTATTA-TTTGACAGTGATTTTCTTCTATATCAGGAACTAAGCAAACACAGGTaaacacagcaaaaacaaaaagaaaaacaagtaatcATTAGCCAGCAAAATATGTGTCTAGGCCATGCAGACTGGCTTTGTGCTGGGCCCTTTGAAGCTGGCAGAAAGTGTGTGTTCACTGTTGCACTGAGTGAAGTTCAAGTTCACTCTTGCACAGAACTTGCACTGAGGGTAGGGATCAGCCAAGGTAAAAGTGTAGAGTCTTCTTATGACATTTGTCAGCTTGTGGCTTAACCTATGCATACATGTGACTTTCTAGGCTCTCCCATGTACGTGAATGATTTTGAATGTCTTAATTTTCCAAATACTCCTCTCCAACTTTTCTTCCCGTGCTGAAGGTGATCTATTATATGTGTAAACTCTAATTTTTGCCCTAAGGATCTGTAGTTTGTTAGGTCTCTTTGCAGAGTCTCTTCATTATGTCCATTCCTTATCTGTTCTGCATTCTagcaacacagaaaa---aaatgccttTCATTAGTCTTTTAGGTATCTCCCAGACCAGTCAGAACAGA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121506404 956 - 127223203 tttatgttttccttttgacatttgagtataatta--agagttgttataaagtctttgtctagtaagtttgatatctgggtttccttagagatattttctgtcaatttattttgttcctttgaatgaggcatattttccaattctttgtatgccttgtaactttttttgaaaactggacgttataattataataattataattactatgtggttactctgtaaatcaga-ctctccccctacaaacacactaacgtttcttgatttaaaattttatttacttattatattgttaaggttag-tttttttagtgaaattttccaaagtgattttacaaaactgtttgctttataaggtgtgatcactgaagtctttttgtttccttaactaatgttaagctaaaa-tttgacagtgattttcttgtatattaggaactaagcaaacacagacaaacacagcaaaaacaaaaagaaaaacaAGTAATCATTAGCCAGCAAAGTATGTGTCTAGGCCACACAGACTGGCTTTGTGCTGGGCCCTTTGAAGCTGGCGAAAAGTGTGTGTTCACTCTTGCACTGAGTGAAGTTCAAGTTCACTCTTGCACAGAgcttgcactgagggtagggatcagccaaggtaaaagtgtagggtcttcttacgacatttgtcagcttgtggcttaacctatgcatacatgtgactttctagactctcccatgtacgtgaatgattttgaatgtcttaattttgcaaatactcctctccaacttttcttcccgtgctgcaggtgatctactgtatgcgtaaactctaatttttgccctaaggatctgtagtttgttaggtctctttgcagagtctcttcattatgtccattccttatctgttctgcattctagcaacacagaaaa---aaatgcctttcgttagtcttttaggtatctcccagaccagtcagaacaga
i chlSab2.chr21                C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e calJac3.chr8                  20045084 2840 + 128169293 I

a score=512022.000000
s hg38.chr14_KI270725v1_random     99251 284 +    172810 --cacatagtaatttgcgggtaagatcttctcttgttcctttgga-tcatggaccagggttcctcactgggaacgtgggcttctgacacttcaaaactgccaatttgctgctgcaaaggcaagttaaaaatgtcataaagttttcaagttgtctttttcttgagtctgctttcacttggttgctgtaatcttttgaccattttccagagttttggcaaagtttattcggacagtttctcttagttgtgtgatgtttctgtggggaaatgaaagattgcagctgtctc
s ponAbe2.chrUn                  5670928 284 +  72422247 --cacataataatttgcgggtaagatcttcgcttgttcctttgga-ccatggaccagggttcctcactgggaacgtgggcttctgacacttcaaaactgccaatttgctggggcaaaggcaagttaaaaatgtcataaagttttcaagttgtctttttcttgagtctgctttcacttggttgttgtaatcttttgaccgttttccagagttttggcaaagtttattcggacagtttctcttagttgtgtgatgtttctgtggggaaatgaaagattgcagctgtctc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44109691 284 -  99891981 --tacataataatttgcgggtaagatcttctcttgttcctttggagccatggaccagtgttccacactgggaacatgggcttctaacacttcaaaactgccagtttgctggggcaaaggcaagttaaaaatatcataaagttttcaagttgtctttttcttgagtctgctttcacttggttgttgtaatcttttgaccattttccagagttttggcaaagtttattctgacagtttctcttagttgtgtgatgtttctgtggggaaatgaaagattgca-ctgtctc
i nomLeu3.chr17                I 2 C 0
s rheMac3.chr3                 124535518 287 - 198365852 catacataataatttgcaggtaagatcttctcctgttcctttggagccatggaccagtgttccacactgggaacgtgggcttctgacacttcaaaactgccaatttggtggggcacaggcaagttaaaaatgtcataaagttttaaagttgtcttttacttgagtctactttcacttggttgttgtaatcttttcaccattttccagagttttggtaaagttcattctggcagtttcttttagttgtctgatgtttctgtggggaaatgaaagattgcagctgtctc
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124986706 287 - 192294377 catacataataatttgcaggtaagatcttctcctgttcctttggagccatggaccagtgttccacactgggaacgtgggcttctgacacttcaaaactgccaatttggtggggcacaggcaaattaaaaatgtcataaagttttaaagttgtcttttacttgagtctactttcacttggttgttgtaatcttttcaccattttccagagttttggtaaagttcattctggcagtttcttttagttgtttgatgtttctgtggggaaatgaaagattgcagctgtctc
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122251206 287 - 180432695 CATACATAATAATTTGCAGGTAAGATCTTCTCCTGTTCCTTTGGAGCCATGGACCAGTGTTCCACACTGGGAACGTGGGCTTCTGACACTTCAAAACTGCCAATTTGGTGGGGCACAGGCAAGTTAAAAATGTCATAAAGTTTTCAAGTTGTCTTTTACTTGAGTCTACTTTCACTTGGTTGTTGTAATCTTTTCACCATTTTCCAGAGTTTTGGTAAAGTtcattttggcagtttcttttagTTGTTTGATGTTTCTGTGGGGAAATGAAAGATTGCAGCTGTCTC
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121507360 287 - 127223203 catacataataatttgcaggtaagatcttctcctgttcctttggagccatggaccagtgttccacactgggaacgtgggcttctgacacttcaaaactgccaatttgctggggcacaggcaagttaaaaatgtcataaagttttcaagttgtcttttacttgagtctactttcacttggttgttgtaatcttttcaccattttccagagttttggtaaagttcattctggtagtttcttttagttgtttgatgtttctgtggggaaatgaaagattgcagctgtctc
i chlSab2.chr21                C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e panTro4.chrUn_GL393527          175000 68642 +    341619 I

a score=224268.000000
s hg38.chr14_KI270725v1_random     99535 131 +    172810 cactgctgttttgctgatGCTCCTCTTTTGTCAATTTTTTCTTCATGTTATTATGCTTTGTTATTAGTTCAtgtattagttttctagggctcccataaccaactaacacaaactgggtgccttgaacaaca
s panPan1.JH650570               1059689 131 +   8823566 CACTGCCATTTTGCTGATGCTCCTCTTTTGTGAATTTTTGCTTCATGTCCTTATGCTTTGTTATTAGttcatgtattagttttctagggctgccataaccaagTAACACAAACTGGGTGCCttgaacaaca
i panPan1.JH650570             N 0 N 0
s nomLeu3.chr17                 44109975 131 -  99891981 cactgctattttgctgatGCTCCTCttttgtcaatttttgcttcatgttattgtgcttttttattagttcatttattaattttctagggctgctgtaaccaagtaacacaaactgagtgccttgaacaaca
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124535805 130 - 198365852 cactgccattttgctgatGCTCCTCttttgtcattttttgcttcatgttattatactctgttattagttcatgtattagctttctagggctgcctcaaccaagt-acacaaactgggtgccttgaacaaca
i rheMac3.chr3                 C 0 I 1667
s macFas5.chr3                 124986993 130 - 192294377 cactgccattttgctgatGCTCCTCttttgtcattttttgcttcgtgttattatactctgttattagttcatgtattagctttctagggctgcctcaaccaagt-acacaaactgggtgccttgaacaaca
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122251493 130 - 180432695 CACTGCCATTTTGCTGATGCTcctcttttgtcattttttgcttCATGTTATTATACTCTGTTATTAGTTCATGTATTAGCTTTCTAGGGCTGCCTCAACCAAGT-ACACAAACTGGGTGCCttgaacaaca
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121507647 130 - 127223203 cactgccattttgctgatGCTCCTCttttgtcattttttgcttcatgttattatattctgttattagttcatgtattagctttctagggctgccttaaccaagt-acacaaactgggtgccttgaataaca
i chlSab2.chr21                C 0 I 1473
e canFam3.chr18                  4070834 4772 +  55844845 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e ponAbe2.chrUn                  5671212   0 +  72422247 C
e panTro4.chrUn_GL393527          175000 68642 +    341619 I

a score=1659.000000
s hg38.chr14_KI270725v1_random     99666 2 +    172810 CA
s panTro4.chrUn_GL393527          243642 2 +    341619 ca
i panTro4.chrUn_GL393527       I 68642 C 0
s ponAbe2.chrUn                  5671212 2 +  72422247 ca
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44110106 2 -  99891981 ta
i nomLeu3.chr17                C 0 I 1914
s macFas5.chr3                 124987123 2 - 192294377 ta
i macFas5.chr3                 C 0 I 1097
s papAnu2.chr3                 122251623 2 - 180432695 ta
i papAnu2.chr3                 C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I

a score=12202.000000
s hg38.chr14_KI270725v1_random     99668 41 +    172810 CTGCTGTTTTGCTGATGCTCCTCttttgtcaattttttctt
s panTro4.chrUn_GL393527          243644 41 +    341619 ctgccattttgctgatGCTCCTCttttgtcaatttttgctt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5671214 41 +  72422247 ctgccattttgctgatGCTCCTCTTTTGTCAATTTTTGCTT
i ponAbe2.chrUn                C 0 C 0
s papAnu2.chr3                 122251625 32 - 180432695 -----aatttattg----tcttttttttttttttttttttt
i papAnu2.chr3                 C 0 I 1396
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e macFas5.chr3                 124987125 1097 - 192294377 I
e nomLeu3.chr17                 44110108 1914 -  99891981 I

a score=165767.000000
s hg38.chr14_KI270725v1_random     99709 660 +    172810 catgttattatgctttgttattagttcatgtattagttttctagggctcccataaccaactaacacaaactgggtgccttgaacaacatacatttatagtcttatagtc--------ctggaagctaaaagtctgagattgaggtgtcagcagggatggtccctacaagggctatgagagaaagtctgttctgtgccttg-tttcttgcttctggtggtttagtggcagtctttggccttccttggctaatctctgccctcataatcacatggtactctccctgtgtgtatgtctccctctactcaat-tttttttttttataaggacatcagtcatattgaattcaggctcgtctgattttatcttaacttaatcacctgtaaagaacctattttctaatgaggtcattttcagtggttaggatttcagcatctatatagaggaaacaatttagctgatatctgtgcatacatgactgtaatagctatgtcttccaaaatccttgacctccttattactacaatataaatatttaaaatcctattcacatttttaatagtctatatcgtgtgttatgagtataatgagttcagtgttcttatgattgctctttgcatgatattttttatcatctttttactttcaatccattagtatccttgcatctcc
s panTro4.chrUn_GL393527          243685 669 +    341619 catgttattttgctttgttattagttcatgtattagttttctagggctcccataaccaactaacacaaactgggtgccttgaacaacatacatttatagtcttatagtcttatagtcctggaagctaaaagtctgagattgaggtgtcagcagggatggtcccttcaagggctatgagagaaagtctgttctgtgccttg-tttctcgcttctggtggtttagtggcagtctttggccttccttggctattctctgccctcataatcacatggtactctccctgggtgtatatctccctctactcaatatttttctttttataaggacatcagtcatattgaattcaggctcacctgattttatcttaacttaatcatttgcaaagaacctattttctaatgaggtcatattcagtggttaggatttcagcatctgtatagaggaaacaatttagctcatatctgtgtatacatgactgtaatagctatgtcttctaaaagccttgacctccttattactataatataaatttttaaaatcctattcacatttttaatagtctctatcgtgtgttatgagtataatgagttcagtgttcttatgattgctctttgcatgatattttttgtcatctttttactttcaatccattagtatccttgcatctct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5671255 662 +  72422247 CATGTTATTATGCTTTGTTATTAGTTCAtgtattagttttctagggctgccgtaaccaagtaacataaactgggtgccttgaacaacataaatttatagtcttatagtc--------ctggaagctaaaaatctgagatcgaggtgtcagcagggatggtcccttcaagggctatcagagaaagtctgttctatgccttgttttctagcttctggtggtctagtggcagcctatggcattccttggctaaactctgccctcataatcacatggtactctccctgtgtatatgtctccctctactcaaatttcttctttttataaggacatcagtcatattgaattcaggttcatctgattttatcttaacttgatcacctgcaaagaacctatttcctaatgaggtcatattcagcggttaggatttcagcatctatatagaggaaacaatttagctcaAATCTgtgcatacatgatggtaatagctatgtcttccgaaagcgttgacccccttattcctacaatataaatttttaaaatcctattcacatttttaatagtctatattgtgtgttgtgagtataatgagttcagtgttcttatgattgctctttgcatgatattttttgtcatctttttactttcaatccattagtatccttgcatctca
i ponAbe2.chrUn                C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I
e nomLeu3.chr17                 44110108 1914 -  99891981 I

a score=-1135.000000
s hg38.chr14_KI270725v1_random    100369 2 +    172810 gg-
s panTro4.chrUn_GL393527          244354 2 +    341619 gg-
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  48950780 2 + 121947112 aa-
i gorGor3.chr9                 N 0 I 629
s ponAbe2.chrUn                  5671917 2 +  72422247 -gc
i ponAbe2.chrUn                C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I
e nomLeu3.chr17                 44110108 1914 -  99891981 I

a score=148419.000000
s hg38.chr14_KI270725v1_random    100371 599 +    172810 gtatattgggatcacttgttttgatccagtccgacaatctctgcctcttgattggactttaatctgctcacatttaatattataattggtataattctatttatgactgccattttacagtttgttttctatatttcccaaatatttttctttattgctttattttacaatgaatgaatattttctaaaacagggaactttagattactaatgaattattttactatatatttttgagaatttttgttgttgttgtaagtttaccatataagtacatggaaaactagttattcaaatcgtcttccaatttatactagtaaactttcattaatacatagaaacatcattcttttagaaatctcttttatttcttccattttaaagtattatcactttacacattacatctattaaagtcacaaagccaacaatacattttagtaattattactttaccatctagtgggattaccttatcacaatacattattcttccaactatctcctttttgatgttactggaaaatatgtcatagacatgttacatttctacatgtcaaatactcagcaatacattatgcacata------ttattattatcat
s panTro4.chrUn_GL393527          244356 605 +    341619 gtatattgggatcacttgttttaatcccatctgacaatctctgcctcttgaagggattttaatctgctcacatttaatattataattggtataattctatttatgtctgccattttaccatttgttttgtatatttctcaaatatttttctttattgctttattttgcaatgaatgaatattttctaaaatagggaactctagattactaatgaattattttactatatatttttgagaatttttgttgtcgttttaagtttaccatataggtatatggaaaattagttattcaaatcaccttccaatttatactagtaaatttttagtaatacatagaaacatcattcttatacaaatctcttttatttcctccattttaaagtattatcactttacacgttacatctattaaagttacaaagccaacaatatattttagtaaatattgctttaccatctagagtgattaccttatcacaatacatttttcttccaactacctcctttttgatgttactggaaaatatgttatagacgtattacatttccacatgtcaaatactcagccatacattatgcacataatattattattattatcat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5671919 599 +  72422247 gtatattgggatcacttgttttaatccagtctgacaatctctgcctgttgattggattttaatctgctcacatttaatattataattggcataattctatttatgtctgccattttaccgtttgttttgtatatttcacaaatatttttctttattgctttattttgcaatgaatgaatattttctaaaatagggaactttagattactaatggatgattttactatatatttttgagaatttttgttgttg---taagtttaccatataggtatatggaaaattaattattcaaatcatcttccaatttatactagtaaacttttagtaatacatagaaacatcatttttatacaaatctcttttatttcctccattttaaagtattatcactttacacattacatctattaaagttacaaagccaacaatacattttagtaattattactttaccatctagagtgattacattatcacaatacagtttgcttccaactacctcctttttgatgttactggaaaatatgttatagacatattacatttctacatgtcaaatactcagcaatacattatgcacata---ttattattattatcat
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr9                  48950782 629 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I
e nomLeu3.chr17                 44110108 1914 -  99891981 I

a score=546.000000
s hg38.chr14_KI270725v1_random    100970 1 +    172810 t
s panTro4.chrUn_GL393527          244961 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  48951411 1 + 121947112 t
i gorGor3.chr9                 I 629 I 1102
s ponAbe2.chrUn                  5672518 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I
e nomLeu3.chr17                 44110108 1914 -  99891981 I

a score=70531.000000
s hg38.chr14_KI270725v1_random    100971 280 +    172810 gagacggagtctccctctgtcgcccaggctggagtgcagtggcacaatctccgctcactgcaagctccatctcccggcttcatgccatttttctgcttcagcctcccgagtagctgggactacaggcgcccgccatcatgcccggctcattttttgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatcttctggcctcgtaatacgcctgcctcggcctcccaaagtgctgagattacaggcatgagccatcgtgcctggc
s panTro4.chrUn_GL393527          244962 280 +    341619 gagatggagtctccctctgtcacccaggctggagtgcagtggcacaatctccgctcactgcaagctccatctcccagcttcatgccattcttcagcttcagcctcccgagtagctgggactacagttgccctccatcacgcccggctaattttttgtatttttagtagagacagattttcactgtgttacccaggatggtcttgatctcctggcctcgtaatacgcccgcctcagcctcccgaaatgctgagattacaggtgtgagccatcgtgcccggc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5672519 280 +  72422247 gaggtggagtctccctctgtcgcccaggctggagtgcagtggcacaatctccgctcactgcaagctccatttcccggcttcatgccattcttctgcttcagcatcccgaatagctgggactacaggcacccgccatcacgcccggctgattttttgtatttttagtagagatggggtttcactgtgttagccaggagggtctcgatctcctggcctcataatacacccacctcagcctcccaaagtgctaagattacaggcgtgagccatcgtgcccggc
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr9                  48951412 1102 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20045084 2840 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I
e nomLeu3.chr17                 44110108 1914 -  99891981 I

a score=73894.000000
s hg38.chr14_KI270725v1_random    101251 174 +    172810 cgttatacacatattattttataaacaatttatgataaagagaaaacatgcatttatactgtcttttataatgttaatattacctataccagtgcttttttaaaaatgtgcattcaaatgactgtcttttgtaactggctttt-gccttaggaatttattt---agtttttttttttt
s panTro4.chrUn_GL393527          245242 177 +    341619 cgttatatgcatattattttataaacaatttatgataaagagaaaacatgcatttctgctgt-ttttataatgttaatattacctataccagtgcttttttaaaaatgtggattcaaatgactggcttgtgtaacttgcttttagccttaggaatttattttagaggttttttttgtg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5672799 178 +  72422247 cattatacacatgttattttataaacaatttatgataaagagaaaacatgcatttctactgtcttttataatgttaatattacctataccagtgccttttaaaaaatgtggattcaaatgactgtcttgtgtaacttgcttttagccttaggaatttattttagtgtttttttttttt
i ponAbe2.chrUn                C 0 C 0
s calJac3.chr8                  20047924 174 + 128169293 cattatgcacatattattttataaataagttatgataaagag-aaatgtgcatttctactgttttttataatgttattattacctacaccagtgctttttttaaagtgtgtatttaaataactgtcttctggaacttgcttttagccttaggaatttattttaatattttttttg---
i calJac3.chr8                 I 2840 C 0
e gorGor3.chr9                  48951412 1102 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I
e nomLeu3.chr17                 44110108 1914 -  99891981 I

a score=-1480.000000
s hg38.chr14_KI270725v1_random    101425 3 +    172810 t-tt
s panTro4.chrUn_GL393527          245419 1 +    341619 t---
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5672977 4 +  72422247 tttt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44112022 3 -  99891981 -ttt
i nomLeu3.chr17                I 1914 C 0
e gorGor3.chr9                  48951412 1102 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20048098 0 + 128169293 C
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I

a score=1293.000000
s hg38.chr14_KI270725v1_random    101428 4 +    172810 ttat
s panTro4.chrUn_GL393527          245420 2 +    341619 --gt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5672981 4 +  72422247 tttt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44112025 4 -  99891981 tttt
i nomLeu3.chr17                C 0 C 0
s saiBol1.JH378145              17633423 4 +  18371965 tttt
i saiBol1.JH378145             N 0 I 32819
e gorGor3.chr9                  48951412 1102 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e calJac3.chr8                  20048098 0 + 128169293 C
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I

a score=487064.000000
s hg38.chr14_KI270725v1_random    101432 653 +    172810 atatggtaggtctgc--cagcaacaacttcagttaatatttctgttaatttgggtaagtctttgtgttatcttcatttttgaaaaataattgctggataaggaattggtggctgacagttt-atttttgtttgcatcttttgactatattattctactgcctcttgccttccattgtttctctt---aagtcagctgttactcttaCaaaacataggtgctcaaaaaataaacatgtgcatgaatatttacagcagtaatatttatacagtcaaaaagtggaaacaatccatatgcttgttgactcataaatggacaccca-----------att---------------tccagctataacaaagaatgaagtacttatacatggtataatatgggtgaaatttgaaagcattatgttaaattcacagaaggacaaacattacttgattttattcacatgaaacatcaggaatcggcaaatcaattgggatataaatcagattagtggtcattagggctcagggaagcagaatagggtgtaacaacttaatgcataatgggcttttagaagggacatgatgaaattatcctggaacattgtgaatattctgaaagcaattgcattgtatgttttaaaatggttaagttattaattttatattatgtga-tttttgccttaGAAAA
s panTro4.chrUn_GL393527          245422 649 +    341619 gtgtggtaggtctgc--cagcaacaacttcagttaatatttctgtttatctgggtaagtcttcgtgttatcttcattttagaaaaataattgctggataaggaattcgtggctgacagttt--ttttcctttgcatcttttgaatatattattctactgcctcttgcattccattgtttctctt---aagtcagctgttaatcttaCaaaacataggtgctcaaaaaataaacatgtgcatgaatatttatagcagtaatattcatacagtcaaaaagtggaaacaatccatatgcttgttgactcataaacggacaccca-----------att---------------ttcagctataacaaagaatgaagtacttatatacggtataatatggctgaaatttgaaagcattatgttaagtgcacaaaagggcaaatattgcttgattttattcacatgaaacatcaggaattggcaaatcaattgggatataaatcagattagtggtcattagggctcagggaagcagattagcgtgtaacaattttatgaataaggggtttttggaaggaacatgatgaaattgccgtggaacattgtgaatatact-aaagtaagtgcattgcatgctttaaaatggtt--gttattaattttatattatgtga-tttttaccttaaAAAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5672985 650 +  72422247 ggatggttggtctgc--cagcaacaacttcagttaatatttctgtttatctgggtaagtctttgtgttatcttcatttttgaaaaataattgctggataaggaattggtggctgacagttt--ttttcctttgcatcttttgaatatattattctactgcctcttgccttccattgtttctgtt---aagtcagctgttaatcTTACaaaacataggtgctcaaaaaataaac--gtgcatgaatatttacagcggtaatattcatacagtcaaaaagtggaaacaatccatatgcttgttgactcataaatggacaccca-----------att---------------tccagctataacaaagaatgaagtacttatacgtggtataatatgggtgaaatttgaaagccttatgttaagtgcacaaaaggaaaaatattacttgattttattcacatgaaacatcaggaactggcaaatcaattgggatgtaaaccagattagtggtcattagggctcagggaagcagaatagggtgtaacaactttatgcataatgggtttttagaagggacatgatgaaattgtcctggaacattgtgaatatgctaaaagcaactgcattgtatactttaaaatggttaggttattaattttgtattatgtga-tttttaccttaaAAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44112029 652 -  99891981 ctatggtaggtctgc--cagcaacaacttcagttaatgtttctgtttatctgggtaagtctttgtgttatcttcatttttgaaaaataattactggataaggaattggtggtagacagttt-tttttcctttgcatcttttgaatatattattctactgcctcttgccttccattgtttctgtt---aagtcagctgttaatctCACAAAGCataggtgctcaaaaaataaatatgtacatgaata-ttatagcagtaatattcatacagtcaaaaagtggaaaccatccatatgcttgttgactcataaatggacaccca-----------att---------------ttcagctataacaaagaatgaagtacttatacatggtaaaatttggtt-aaatttgaaagcattatgctaagtgcacaaaaggacaaatattatttgattttattcacatgaaacatcaggaattggcaaatcagttgggatataaatcagattagtggtcattagagctcagggaagcagaatacagggtaacaactttatgcataatggatttttagaagggacaagatgaaattgtcttggaacactgtgaatatactaaaagcaactgcattgtgtactttaaaaaggttaagttgtgaattttatattgtgtgattttttaccttaaAAAA
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20048098 680 + 128169293 gtatgataggtctgctttgaagaccaaaccagctaatatttctgtttatctgg----gtctttgtgttaccttcatttctgcaaaataattactggatataaaattggtggttgacagttttttttcccttcacaccttttgaatatattagtctactgccttttacctttcatttcttctgttgagaagtcagctgttaatcttacagaacataggtgttcaaaaaataaacttgtacataaatatttatagcagtaatattcatagagtcaaaaagtggaaacaatccatatgcctgttgactcataaatggacacacaaaatgtgatatattcactcaatgagatgattcagctataacaaagaatcaagtacgtacacatggcataatatgggtgaaatttgaaagcattatgctaagtgcacaaaaggacaaatattacttgattttattcacatgaaacatcaagaattggcaaatcaattgggatataaatcagattaatggtcactaggactcaggaaagcagaataggaggtgacaactttatgcataatgga-ttgtggaagggacatgatgaaattgtcctggaacattgtaaatttactgaaagcaactgcattgtatactttaaaatgggaaagttacaaattttatattatgtaa-attttaccttaaAAAA
i calJac3.chr8                 C 0 I 1
e gorGor3.chr9                  48951412 1102 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I

a score=7670.000000
s hg38.chr14_KI270725v1_random    102085 6 +    172810 CAAAAA
s panTro4.chrUn_GL393527          246071 6 +    341619 CAAAAA
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  48952514 6 + 121947112 CAAAAA
i gorGor3.chr9                 I 1102 I 2424
s ponAbe2.chrUn                  5673635 6 +  72422247 CAAAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44112681 6 -  99891981 CAAAAA
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20048779 6 + 128169293 TAAAAA
i calJac3.chr8                 I 1 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I

a score=778691.000000
s hg38.chr14_KI270725v1_random    102091 1085 +    172810 AGAGAAAATAGccttactgtatatacaaaaaactcaagatgtgttacaaatttatatgtgaaatccaaaaTACTGTAATATTTAAGGGATAGCTAAGTAGAATAACACT-AAAATTTAACATAATGAAATATTTCCTTAGAAAAGAAAAAAGCACAGTAATTAAAAAGGGAAATATAG----TTAATATTTTTTCCCTCCATTAAGCATACCATTAAC-TG---------------ATTAAAAAATCAAGCTGCAATTATGTAAACTACATTTTCTGAAACCATAAAGAAAATaagaagtgaaaagggattt-gggaaaaaaatccaaaggtacagtcaactacacaaaaaaagcttagtctcattaatcattatgaaaatgcaaattgtagttgaaaaaagataaaactacaattcaaagagaaagcctaaaattTCAACCCCCCCAAAATTCTGGGTTTTGCAGAGCTGGGATGGAATAGGGCTCCTAACCTTACAACAATGTAATAACCAAACTGACTTCAAAGTCATGACTTTATTTTTATAGCAACCAGGTTGCCAAGAACTGAGTCAAAATGTCAGGGAAAGGAGGCACCTGCAAGGAGAAAGGGGACAGATGCACTTACATAGGACAGATGCAAATAGACACCACTATGACACGTAAAGCTGGAATAATCAATACATTCCTAAGGACAAAGTGGGGCTGGTCGGATTGGGAAATGGCTGACAGCTGCAGAAGTTGGGAAAGATCCATCATCTTGAAAACTTTTTCCGCACAAACCCACTGTGATCGCTCAAGCAATTGGTAAGGAATCCAAGAGAGTCTGTATATGATACAGATCAGGGAGAGCAGAACACttgggaggtgaccaggtctttggggc-cgagcccttttgaatgggattagtgcctttata-----------------------------------aaagaagctcagtggagttcttgtgtgccttccactatgtgaggacatagaaagaaggcaccatctatgaaccatgaaatgggctctcat-caacactgaatttgtgagcattttgacctgagatcttacagcctcaagaagtgtgaaaaaagaaatatctgttgttttttagtcacccagttcatgttat
s panTro4.chrUn_GL393527          246077 1084 +    341619 AGAGAAAATAGCCTTACTCTATAAATAATAAACTCAAGATATGTTACAAATTTATATGTGAAATACAAAATACTATAATATTTAAGGAATAGCTAAGTAGAATAAAACT-GAAATTTAACATAATGAAATATTTCCTTAAAAAAGAAAAAAGCACAGTAATTAAAAAGGGAAATATAT----TTAATATTTTTTCTCTCCATTAAGCATGCCATTAAC-TG---------------AGTAAAAAATCAAGCTGCAATTATGCAAACTACATTTTCTAAAACCATAAAGAAAAGAAGAAATAAAAAGGTATCT-GGGAAAAAAATCCAAAGGTACAGTCAACTACACAAAAAAAGCTTAGTCTCATTAATCATTATGAAAATGCAAAAGATATCTGAAAGAAGATAAAACTATAATTCAAAGAGAAAGCCTAAAATTGCAACCCCCA-AAAAGTCTGGGTTTTGGAGATCTGGGATGgaatagggttcctaacctgacaacaatgaaagaaccaaactaacttcaaagtcatgactttatttttatagcaacgaggttgccaagaactgagtcaaaatgtgagggaaaacaagcacctgcaaagagaaagaggacagatgcacttacataggacagatgcaaatagacaccactatgacaagtaaagctgcaataatcaataaattcctaaagacaaagtggggctggtcagattgggagaccgctgacagctgcagaagttgggaaagatccatcatcttgaaagctttttCGCCACAAACCCACTGTGATCTCTCAAGCAATTAGTAAGGAATCCAAGAGAGTCGGTATATGACACAGATCAGCGAGAGCAGAACACttgggaggtgaccaggtcttgggggc-cgagcccttatgaatgggattagtgcctttata-----------------------------------aaagaagctcaatggagttcttgtgtgccttccactatgtgaggacatagaaagaaggcaccatctatgaaccatgaaattggctctcat-caacactgaatttgtgagcatcttgacctaagatcttacagcctcaagaagtgtgaaaaaagaaatatctgttgttttttagtcacccggtttatgttat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5673641 1079 +  72422247 AGAGAAAATAGCCTTACTCTATACAGAATAAACTCAAGATGTGTTACAAATTGATATGTGAAATCCAAAATACTATAATATTTAAGGAACAGCTGAGTAGAATAACACT-AAAATTTAACGTAATGAAATATTACCTTAAAAAAGAAAAAAGCATAGTAATTAAAAAGGGAAATATAG----TTAATCTTTTTTCTCTCCATTAAGCATGCCAT-----TG---------------AGTAAAAAATCAAGCTGCAA-TATGTAAACTACATTTTCTAAAACCATAAAGAAAATACGAAATGAAAAGGGATTT-GGGAAAAAAATCCAAAGGTACAGTCGACTACAC-aaaaaagcttagtctcattaatcattatgaaaatgcaaattgtaactgaaataagataaaactacaATTCAAAGAGAAAGCCTACAATTTCAACCCCCAAAAAATTCTGGGTTTTGGAGAGCTGGGATGgaatagggctcctaaccttacaacaatgaaagaaccaaactaacttcaaagtcatgattttatttttatagcaaccaggttgccaagaactgagtcaaaatgtgagggaaaacaagcacctgcaaggagaaagaggacagatgcacttacataggacagatgcaaatagacaccactatgacaaggaaagctggaataaccaataaattcctaaagataaagtggggctggtcagattgggaaaccgctgacagctgcagaagttgggaaagatccatcatcttgaaaactttttcccCAGAAACCCACTGGGCTCTCTCAAGCAATTGGTAAGGAATCCAAGAGAGTCTGTatatgatacatatcagagagagcagaacacttgggaggtgaccaggtcttgggggc-cgagcccttatgaatgggattagtgcctttata-----------------------------------aaagaagctcagtggagttcttgtgtgccttcagctctgtgaggacatagaaagaaggcaccatctatgaaccatgaaatgggctctcat-caacactgaattcgtgagcatcttgacctgagatcttacagcctcaagaagtgtgaaaaaagaaatatctgttgttttttagtcacccagttcatgttat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44112687 1079 -  99891981 AGAGAAAATAGccttactctatacaaaataaactcaagatgtgttacaaatttatatgtgaaatccaaaatactataaTACTTAAGGAATAGCTAAGTAGAATAACACT-AAAATTTAGCATAATGAAATATTTCCTTAAAAAAGAAAAAA-CATAGTAATTAAAAAGGGAAATATAGTTCATTAATATTTTTTCTCTCCATTAAGCATGCCATTAAC-TG---------------AGTAAAAATTCAAGCTGCAA-TATATAAACTACATTTTCTAAAATTATAAAGAAAATATGAAAtgaaaagggtctt-aggaaaataatccaaaggtacagtcaactacac-aaataagcttagtctcattcatcattatgaaaatgcaaattgtaactggaataagataaaaccacaattcaaagagaaaggttaaaatttcaaaccaaaaaaaattctgggttttggagagCTGGGAAGGAATAGGGCTGCTAACCTTATGACAATAAAAGAACCAAACTAACTTCAAAGTCATGACTTTATTTTTATAGCAACCAGGTTGCCACGAACTGAGTCAAAATGTGAGGGAAAATAAGCACCTGCAAGGAGAAAGAGGACAGATGCACTTACATAAGACAGATGCAGATAGACACCACTATGACAAGTAAAGCTGGAATAATCAATAAATTCCTAAAGACAAAATGGGGCTGGTCAGATTGGGAGACCGCTGACAGCTGCAGAAGTTGAAA-------ACCATTTTGAAAACTTTTTCCCCACAAACCCACTGGGATCTCTCAAGCAATTGGTAAGGAATCCAAGAGAGTCTGTATATGATACAGATCAaggagagcagaacactggggaggtgaccaggtcatgggggc-tgagccgttatgaatgggattagtgcctttata-----------------------------------aaagaagctcagtggagttctagtgtgccttccactatgtgaggacatagaaacaaggcaccatttatgaaccatgaaatgggctgtcat-caacactgaatttgtgagcatcctgacctgagatcttacagcctcaggaagtggaaaaaaagaaatatctgttgttttttagtcactcagtttatgttat
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20048785 1113 + 128169293 AGAGAAAACAGACTTACTCTATACATAATAAATTCAAGATGTGTTACAAATTTGCATGTAAAATTCGAAATGCTATAGTATTTAAGGAATAGCTAAGAAGAATATCACtaaaaatttagtataatgaaaattttttttaaaaaa---------aCAGTAATTAAAAAGGGATATGTAATCAATTAATATTCTTTCTCTCCATAAAGCACACCAACAACATGTAAAATCAACAACATGTAAAAAAATCAAGCTGCAA-CATGTAAACTACATTTTCTAAAACCATGAAGAAAACATGCAATGATAAGTGATTTGGGGGAAAAAACCCAAATGTACAGTCAATTACAGAAAAAAAA---ACTTTCCTTAATCATTATAAAAATGGAAATTGCAACTGAAATATGATAAAACTACATTTCAAAGAGAACAGCTAAAATTTCAAGCCAAA-AAAATTCTGAGTTGTGGAGCACTGGGAAGGAATAGGTCTCCTAGCCTTACCACAATAAAAGAACTAGACAGAA--CAAAGCCATGACTTTATTTTTATAGCAATCATGTTGCCAAGAACTGGGTCAAAATGTAAGGGGAACAGAGCACCCACAAAGAGTAAAAGGATGAATGCCTTTACATAGGACAGATGCAAACAGATACCACTATTACAA-TAAAGCCGAAATAATCAATTAATTCCTAAAGGCAAGGTGGTGCTGGTCA-------------CTGACAGCTGCAGAAATTGGGAAAGATCTACCATCTTGAAAACTTTTTCCCCACATACCCATTGGGATCTCTCAAACAATTGATAAGTACTCCAAGAGAGTCTGTATATGATACAGATCAGGGACAGCAGAACACTGgggaaatgactgggtcttgggggcgcaagcccttatgaatgagattagtgtctttatgaaagaagcccaatgcaattcttgtatgccttccataaagaagcccagtggagttctcgtgtgtcctccactatgtgaggacatagaaagaaggcaccgtctatgaaccatgaaatgggctcttgtgaaactctgaacttgtgggcatcttgatctgagactttacagccgcaagaagtgt-aaaaaagaaatatctgtggttttttagttagctagtttatattat
i calJac3.chr8                 C 0 I 216
e gorGor3.chr9                  48952520 2424 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I

a score=479435.000000
s hg38.chr14_KI270725v1_random    103176 951 +    172810 tttgttataagaatccaaatagaccaagataTTCCACTTAATATGTAGGGGAAGGTAACAAAAACTGACACACCTAGAATACTCATGATGCTGGGAGTATGAAAACAGGA-----AAAACAAAACAAAACTGCTCTTGAAGGTGAAGGAGGAATAT-ACTGAGCTCACCAACACAGCCAGGAAAAGAACAGAAGTGTGAGAAGTCTACATTCCTGAGATCCTGAGAAAAAGTACCTGCATAAGACTGAGATGAAATTACCTACCCTAGTtataattgaaatcccaaaaagaaaataggaaaaaatagtggagcaaaagaaatatttttcaaaataactgccaaaaatattct-aaaagaagtgacagaaaatcaaatttcagatataggaaactcagagaatgtcaaatagaacaaaaataaataagaattacatcttggaaa-atcTTTAAAAAATCAACTCTAAATTTTATATcttgctccaaatatatagagatacaaataggttatcatcaagatatggagaaagccatatcatggaaacactaaaataaagctgtggaaggacgacattgatattagacacaacagagttcagaacaagaaatagtatcagagatgagagataatagataatataataatcaattctcaagaagatgtaaacatcctactaattagggtatgcagctaacaacagaacctccaaatacatgaggaaaaacatgaaagaaatcaaaggtgaactagaaaaatccaaaattatatttgcagacttcaaaacttttgtcttagtaagggacagactaggcacagactcagtaaccatatggaagataagaacaacaatatcaccaacaagacatccaatcTGCAATGGCAGATACTCTTTCCTTTCAAGTGAAAAAAAAA------CAGTATGGCATATTCTCTAACAAACCCAGAATTTCTAATGTTTGCGG
s panTro4.chrUn_GL393527          247161 952 +    341619 tttgttataagagtccaaatagaccaagacaTTCCACTTAATATGTAGGGGAAGGCAACAAAAACTGCCACACTTAGAATACTCCTGATGCTGGGAGTATGAAAACAGGA-----AAAACAAAACAAAACTGCTCTTGAAGGTGAAGGAGGAATATCACTGAGCTCACCAACACAGCCAGGAAAAGAAGAGAAGTGTGAGAAGGCTACATTCCTGAGACCCTGAGAAAAAGTACCTGCATAAGACTGAGATGAAATTACCTACTCTAGTtatgattgaaatcccaaaaagaaaagagggaaaaataatggagcaaaagaaatatatttcaaaataactgccaaaaatattct-aaaataagtgacagaaaatcaaacttccaatataggaaactcagagaatgtcaaatagaacaaaaagaaaTAAGAATTCCATCTTGAAAA-ATCTTTAAAAAATCAACTCTAAATTTTATATcttgctccaaatatatagagatataaataggttatcatcaagatgtggagaaagctatatcatggaaacactaaaataaatctgtggaaggactacattgatattagacacaacagagttcagatcaagaaatagtatcagatatgagagataatagataatagaataatcaattctcaagaagatgtaaacatcctactaattagggtatgcagctaacaacagaacctccaaatacgtgaggtaagacatgaaagaaatcaaaggtgaactagaaaaatccaaaattatatttgcagacttcaacacttttgtcttagtaatggaaagcctaggcacaaactcagtaatcatgtggaagataagaacaacaatatcaccaacaagaCATCCAGTCTTCAATGGCAGATACTGTTTCCTTTCAAGTGAAAAAAAAA------CAGTATGGCATATTCTCTAACAAACCCAGAATTTCTAATATTTGAGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5674720 957 +  72422247 ttcgttataagagtccaaatagaccaagGTATTCCACTTAATATGCAGGGGAAGGCAACAAAAACTGCCACACTTAGAATACTCCTGATGCTGGGAGTATGAAAACGGGA-----AAAGCAAAACAAAACTGCTCTTGAAGGTGAAGGAGGAATATCACTGAGCTCACTAACACAGCCAGGAAAAGAACAGAAGTGTGAGAAGGCTACATTCCTGGGACTCTGAGAAAAAGCACCTGCATAAGACTGAgatgaaattacctaccctagttataattgaaatcccaaaaagaaaagaggaaaaaataatggag-aaaagaaatatttttcaaaataactgccaaaaacattct-aaaagaagtgacagaaaatcaaacttcagatataggaaactcagagaatgtcaaatagaacaaaaataaataagaattacatcttgaaaa-atctttaaaaAATCAACTCTAAATTTTATATcttgctccaaatatatagagatataaataggttatcatcaagatatggagaaagccatatcatggaaacactgaaataaagctgtggaaggactacattgatattagacacaacagagttcagagcaagaaatagtatcagagatgagagataatagataatataataatcagttatcaagaagatgtaaacatcctactaatttgggtatgcagttaacaacagaacctccaaatatgtgaggtaaaacatgaaagaaatcaaaggtgaactagaaaaatccaaaattatatttgcagacttcaactcttttgtcttagtaatggacagactaggcagaaactcagtaatcatatggaagataagaacaacaatatcaccaacaagacatccaatcTTCAATGGTAGATACTGTTTCCTTTCAAGTGGAAAAAAAAAAAAACCAGTATGGCATATTCTCTAACAAACCTAGAACTTCTAATATTTGTGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44113766 958 -  99891981 tttgttataagagtccaaatagaccaagacaTTCCACTTAATATGTAGGGGAAGGCAACAAAAACTGCCACACTTAGAATACTCCTGATGCTGGGAGTATGaaaacaggaaaaacaaaacaaaacaaaacTACTCCTGAAGGTGAAGGAGGAACATCACTGAGCTCACCAACACAGCCAGGAAAGGAACAGAAGTGTGAGAAGGCTACATTCCTGAGACCCTGAGAAAAAGTACCCGCatgagactgagatgaaattacctaccctagttacaactgaaatcccaaaaag--aagaggaaaaaataatggagcagaagaaatattttttaaaataactgtcaaaaatattataaaaaaaagtgacagaaaatcaaacttcagatacaggaaactcagagaatgtcaaatagaacaaaaatagataagaattacatcttgaaaatatctttaaaaaATCAACTCTAAATGTTATATcttgctccaaatatatagagatataaataggttataatcaaggtatggagaaagccatatcatggaaacactgaaataaagctgtggaaagactacattgatattagacacaacagagttcagaacaagaaatattatcagagatgagagataatatataatataataatcaattctcaagaagatgtaaacaccctactaattagagtatgcagctaacaacggaacttccaaatacatgaggtaaaacatgaaagaaatcaaaggtgaactagaaaaatccaaaattatatttgcagacttcaacacttttgtcttagtaatggacagactaggcacaaactcagtaatcatatagaagataagaacaacaatatcaccaacaagacatccaatcTTCAATGGCAGATACTCTTTCCTTTCAAGTGAAAAAAAAAA-----CAGTATGGCGTATTCTCTAACAAACCCAGAATTTCTAATATTTGCCG
i nomLeu3.chr17                C 0 C 0
e gorGor3.chr9                  48952520 2424 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I
e macFas5.chr3                 124987125 1097 - 192294377 I

a score=910.000000
s hg38.chr14_KI270725v1_random    104127 1 +    172810 T
s panTro4.chrUn_GL393527          248113 1 +    341619 t
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5675677 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44114724 1 -  99891981 T
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124988222 1 - 192294377 t
i macFas5.chr3                 I 1097 I 24
e gorGor3.chr9                  48952520 2424 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e papAnu2.chr3                 122251657 1396 - 180432695 I

a score=239278.000000
s hg38.chr14_KI270725v1_random    104128 318 +    172810 cttccttccttctttcca---tcttccttt---ttctctttccttcccttgccttcttccttcctttcttcttttcctcttccttttct--tttctttt------ccttt--ttcttttt-----ttctccttccttccttctttgcttccttctttctttcctctgattcttccttccctcctccctccct----tcctttct-ccctcccttcttttcttccttc-ttttctcttattctttct----ttctcacttccttgctttctttc-ttttttctcccgtcctccctccctccttttcttccttcctccctcccttcctttcctcatttttccttccttcctt
s panTro4.chrUn_GL393527          248114 331 +    341619 cttccttccttctttcca---tcttcctttctcttctcttctcttcccttcccttcttccttcctttcttcttttcctcttccttttctcttttctttt------cctttctttctttttcttttttctccttccttccttatttccttctttctttctttcctcttatttttccttccctcctccctccct----tcctttct-ccctccctt---ttcttccttc-ttttctCGTATTCTTTCTGTCTTTCTCACGTACTTGCTttctttccttttttctcccttcctcccgccctcctgttcttccttcctccctcccttcctttcctc-tttttccttccttcctt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5675678 325 +  72422247 Cttccttccttctttcca---tcttcctttctcttctcttcccttcccttgccttcttcctttctttcttcttttcctctttcttttct-tttcctttt------ccttt--tcctctttcttttcttcttttttctccttccttctttccttctttctttcctctgattcttccttccctcctccctccct----tccttTCtcccctcccttcttttcttccttc-nnnnnnnnnnttctttct----ttctcactttcttgctttctttccttttttcttccttcctccctccctccttttcttccttcctccctcccttccctcc----tttttccttccttcctt
i ponAbe2.chrUn                C 0 I 4
s nomLeu3.chr17                 44114725 278 -  99891981 Cttccttccttctttcca---tcttcctttctcttctcttcccttcccttgccttcttccctcctttcttcttttcttctttcttttcc-tttcctttt------tcttt--tttcttttcttttcttttctttctttc-----tcttcttttctttcttttttct-------------------ccttcct----tccttctt-------------tccttccttc-tttcctcttattcttcct----tt------------cttccttcccttatccctcccttcctttctgcctccctttctccctccctttctctctctctctc-tc-tttctctttctttcttt
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124988247 316 - 192294377 cttccttccttctctttactttctttctttcccttc----ctttttccattctctcttcctcctttccttccttccttcctcccttctttctttctttc------ttttt--ttcttgctttctggtgttcttgctttctttttttctcccttcctgcctttctct----tttcctccctccctcccttcct----tcattttc-tcct-------tttctttcttctttttctttccttcattct----ttcccactttcttgctttctttccttttttctttctcccttcctccctccttttcttccttcttccctcccttcctttcct--ttcttccttccttcctt
i macFas5.chr3                 I 24 C 0
s papAnu2.chr3                 122253053 337 - 180432695 cttccttccttctctttactttctttctttcccttcctctctttttccattctctcttcctcctttccttccttccttcctcccttctttctttctttctttcttttttt--ttcttgctttctggtgttcttgctttctttttttctcccttcctgcctttctct----tttcctccctccctcccttccttctctcattttt-tccttcttttctttcttctttctttttctttctttcattct----ttcccactttcttgctttctttccttttttctttctcccttcctccctccttttcttccttcttccctcccttcctttcct--ttcttccttccttccct
i papAnu2.chr3                 I 1396 C 0
e gorGor3.chr9                  48952520 2424 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I

a score=6191.000000
s hg38.chr14_KI270725v1_random    104446 5 +    172810 ccttc
s panTro4.chrUn_GL393527          248445 5 +    341619 cattc
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  48954944 5 + 121947112 ccttc
i gorGor3.chr9                 I 2424 C 0
s ponAbe2.chrUn                  5676007 5 +  72422247 ccttc
i ponAbe2.chrUn                I 4 C 0
s nomLeu3.chr17                 44115003 5 -  99891981 ctttc
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124988563 5 - 192294377 ccttc
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122253390 5 - 180432695 ttttt
i papAnu2.chr3                 C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I

a score=6288.000000
s hg38.chr14_KI270725v1_random    104451 12 +    172810 cttttcctcttt
s panTro4.chrUn_GL393527          248450  8 +    341619 g----cctcttt
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  48954949 12 + 121947112 ctttgcctcttt
i gorGor3.chr9                 C 0 I 7782
s ponAbe2.chrUn                  5676012 12 +  72422247 cttcTCCTCTTT
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr3                 124988568 12 - 192294377 ccttttttcctt
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122253395 12 - 180432695 ccttccttcctt
i papAnu2.chr3                 C 0 C 0
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e nomLeu3.chr17                 44115008  0 -  99891981 C

a score=6307.000000
s hg38.chr14_KI270725v1_random    104463 25 +    172810 attttcttt----ctttgccttcctcctt
s panTro4.chrUn_GL393527          248458 29 +    341619 attttctttgtttctttgccttcctccct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5676024 29 +  72422247 ATTTTCTTTGTTTCTTTGCCTTCCTCCCT
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr3                 124988580 11 - 192294377 ------------------ccttccttccc
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122253407 10 - 180432695 ------------------ccttccttcc-
i papAnu2.chr3                 C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e canFam3.chr18                  4070834 4772 +  55844845 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e nomLeu3.chr17                 44115008  0 -  99891981 C

a score=51539.000000
s hg38.chr14_KI270725v1_random    104488 108 +    172810 tttaccgttctctcttcctcctttccttcctct-cttct-tcctttctttctttctctctttctctct-ctgtctctttctttccctttctttctttctttcttt--------ctttct
s panTro4.chrUn_GL393527          248487  88 +    341619 tttaccattctctcttcctccttttcttcctcc-cttcc-tcctttctttctttctctctttctct---------------------ttctttctttccttcctt--------ctttct
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5676053  96 +  72422247 TTTACCATTTtctcttcctcctttcctccctcc-cttcc-tccttcctttctttctttctcacttt-------------ctttctctttctttctttcttttttt--------ctttct
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr3                 124988591 104 - 192294377 t------tttttccttccttccttccttccttc-cttccttccttccttccttctctttactttttttcccttcccccctttttccattctctcttcctcctttt--------cttcct
i macFas5.chr3                 C 0 I 3
s papAnu2.chr3                 122253417  92 - 180432695 ----------ttctttccttccttccttccttc-cttc--tctttactttctttcccttccccccttt--------------ttccattctctcttcctccttttctccctcccttcct
i papAnu2.chr3                 C 0 I 3
s canFam3.chr18                  4075606 110 +  55844845 TTTGTCATctcctcctcctcctcctcttcctcctcctct-tcctcctcctcctcctcttctttcttcttcttcttcttcttcttcttcttcttcttcttcttctt--------cttctt
i canFam3.chr18                I 4772 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e chlSab2.chr21                121507777 1473 - 127223203 I
e nomLeu3.chr17                 44115008   0 -  99891981 C

a score=125639.000000
s hg38.chr14_KI270725v1_random    104596 150 +    172810 -ttctttctttctttctttcttgtgttctttctttc-t-tttttctcccttcctgcctttctcccttc------------ctccctccctcccttccttccttctctcatttcctccctcttttcttt------cttctttctttcttt----ccttccttccttctttccttcc
s panTro4.chrUn_GL393527          248575 147 +    341619 -ttcttgtgttcttgctttctttt-ttctcccttcc-tgcctttctcccttcctgcctttctcccttc------------ctccctccctcccttccttcc-------gtttcctccttcttttcttt------cttctttctttctttatttccttccttccttctttccttcc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5676149 132 +  72422247 -ttctt-ttttatttctttcttgtgttcttgctttc-t-tttttctcccttcctgcctttctcccttc------------ctccctccctcccttccttccttctctcatttcctcc-----ttcttt------cttctttctttcctt----------------ccttccttcc
i ponAbe2.chrUn                C 0 C 0
s macFas5.chr3                 124988698 128 - 192294377 -ttcttgctttcttgctttctggtgttcttgctttcttttttttctcccttcctgcttttctcccttc------------cttcctccctcccttctttccttctctcattttctccttcttttcttt----------------------------------tttctttctttct
i macFas5.chr3                 I 3 I 2
s papAnu2.chr3                 122253512 107 - 180432695 -ttcttgctttcttgctttctggtgttcttgctttc-tttttttctcccttcctgcttttctcccttc------------cttcctccctcccttctttccttctctcattttctccttct------------------------------------------------------
i papAnu2.chr3                 I 3 C 0
s chlSab2.chr21                121509250 173 - 127223203 -ttcttgctttcttgctttctggtgttcttgctttc-tttttttctcccttcctgcttttctcccttccttcctccctctcttcctccctctcttccttccttcTCTCATTTTCTCctttctttctttcttttctttctttctttctttctttctttctttctttctttctttct
i chlSab2.chr21                I 1473 I 4
s canFam3.chr18                  4075716 142 +  55844845 cttcttcttcttcttcttcttcttcttcttcttttc-ttcttcttcttcttcttcttcttcttctttc------------ttcttcttctccttttcttcttttcctcctcttcttcctcttcctctt------cctcc--------------cctcctctccatctcctcctcc
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124535935 1667 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e nomLeu3.chr17                 44115008   0 -  99891981 C

a score=634810.000000
s hg38.chr14_KI270725v1_random    104746 368 +    172810 ttcttttta-ctttctttcttttcttttctttctttctCTTTACCACAA-TTCATATTATT-TAAAAAA---ATTAATACAGGGAGG----AAG-AAAAATAAAGAACATTTTAATCTGCATGTAAATAGA-TTATGTCT-GCTgt---agacaaaaggatgacctcccaaaaatgttcatgtcctaattaccagaatctaacatacaaata-----ggttacatggcagtggaaaactagatttcaagtgaaattaaggtt-----gcaataaa--atgatg-gagagattatattaaatggtggggatcaatgaaatcacaagattccttataagtgaaagaagaaggcagaagaaaggcaaccatggag-gtggtggcatgagaaattactcaac
s panTro4.chrUn_GL393527          248722 368 +    341619 ttcttttt------ctttgttttcttttctttctttctCTTTACTACAA-TTCATATTATT-TTAAAAA---ATTTAGAGAGGGAGG----CAG-AAAAATAAAGAATGCTTTAATCTGCAGGTAAATAGA-TTATGTCT-GCTgt---aggcaaaagaatggcctcccaaaaattttcatgtccaaattcccagagtctaaaatacaaatatgttaggttgcatggcagtgtgaaattagatttcaagtgaaattaaggtt-----gcggaaaa--atgata-gatagattgtcttaaatgggtgggatcaatgaaatcacaaacttccttattagagaaagaagaaggcagaagaaaggcacccttggag-gtggtggcatgagaaattactcaac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5676281 370 +  72422247 ttcttttta-----ctttcttttcttttctttctttctctttactACAA-TTCATATTATTCTAAAAAA---ATTAAGAGATGGAGG----CAG-AAAAATAAAGAACACTTCAATCTGCGGGTAAATAGA-TTATGTCT-GCTgt---agacaaaagaatgcctccccaaaactgttcatgtcctaattcccagagtctaacatacaagtatgttaggttgcatggcagtgggaaattagatttcaagtgaaattgaggtt-----gcaataaa--atgttg-gagagattatcttaagtgggtgggatcaatgaaatcacaagcttccttataagtgaaagaaggcggcagaagaaaggcaaccatggag-gtggtggcatgtgaaattactcagt
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr3                 124537602 375 - 198365852 ttcttttttctttctttcttttctttctttttctttctctttACTACAA-TCCatattatttttaaaaa---attaaGAGAGGGAAG----CAG-AAAAATAAAGAATATTTTAATCTGCAGGTAAATAGA-TTTTGTCT-GCTgt---aggcgaaataatggcctcccaaaaatgttcatgtcctaattcccagagcctaacatacaaatatgttaggttgcatggcagtaggaaattagatttcaaatgaaattaaggtt-----gcaataaa--atgatg-gagagattatcttaaatgggtgggctcaatgtaatcacaagcttccttgtaagtgaaagaaggaggcagaagaaagataaccatggag-gtggcggcgtgaggaataactcaac
i rheMac3.chr3                 I 1667 C 0
s macFas5.chr3                 124988828 358 - 192294377 -----------------tctttctttttctttctttctctttACTACAA-TCCATATTATTTTTAAAAA---ATTAAGAGAGGGAAG----CAG-AAAAATAAAGAATATTTTAATCTGCAGGTAAATAGA-TTTTGTCT-GCTgt---aggcaaaataatggcctcccaaaaatgttcatgtcctaattcccagagcctaacatacaaatatgttaggttgcatggcagtaggaaattagatttcaaatgaaattaaggtt-----gcaataaa--atgatg-gagagattatcttaaatgggtgggctcaatgtaatcacaagcttccttgtaagtgaaagaaggaggcagaagaaagataaccatggag-gtggcggcgtgaggaataactcaac
i macFas5.chr3                 I 2 C 0
s papAnu2.chr3                 122253619 371 - 180432695 ----tttcttttttctttctttctttttctttctttctctttactacaa-tccatattatttttaaaaa---attaagtgagagaag----cag-aaaaataaataatattttaatctgCAGGTAAATAGA-TTTTGTCT-GCTGT---AGGCGAAATAATGGCCTCCCAAAAATGTTCATGTCCTAATTCCCAGAGCCTAACATACAAATATGTTAGGTTGCATGGCAGTAGGAAATTAGATTTCAAATGAAATTAAGGTT-----GCAATAAA--ATGATG-GAGAGATTATCTTAAATGGGTGggctcaatgtaatcacaagcTTCCTTGTAAGtgaaagaaggaggcagaagaaagatAACCATGGAG-GTGGTGGCGTGAGGAATAACTCAAC
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121509427 375 - 127223203 ttctttctttctttctttctttctttctctttctttctCTTTACTACAT-TCCATATTATTTTTAAAAA---ATTAAAAGAGGGAAG----CAG-AAAAATAAAGAATATTTTAATCTGCAGGTAAATAGA-TTTTGTCT-GCTAt---aggcgaaataatggcctcccaaaaatgttcaggtcctaattcccagagcctaacatacaaatatgttaggttgcatggcagtaggaaattagatttcaaaagaaattaaggtt-----gcaataaa--atgatg-gagagattatcttaaatgggtgggctcaatgtaatcacaagcttccttataagtgagaggaggaggcagaagaaagataaccatggag-gtggcggcgtgagaaataactcaac
i chlSab2.chr21                I 4 C 0
s canFam3.chr18                  4075858 347 +  55844845 ---------------------------accttctTT-TTTCTACCACTAATCTATATTATGTCCAAAGATCTTTTAGGAAATGGTGGAGTACAGAAAAAACAAAGATCGTTTTAATCTATAGGTAAATAGACTTATGTCTAACtatggaagagaaagtaatggcacctttaaaatgcccaggtcctaatcttcagaacctgg-----agctatgttagcttacatggtagtgggaatttagactgtaaatggagttaaaatttctgagcaatcgactctgatatgggagatggacctggaagggtgaatccaatgtgatcaca------------agtgaagggag-----acaggagagggaactgcaaaacatgaccacatgagagat-acttggc
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e nomLeu3.chr17                 44115008   0 -  99891981 C

a score=199304.000000
s hg38.chr14_KI270725v1_random    105114 121 +    172810 atcactgacttttaagatacaagaatgaggacccagtgcggtggctcacgcctaatcccagccctttgggaggccgccggggtgggtggatcacgaggtcaggagttcgagaacatcctgg
s panTro4.chrUn_GL393527          249090 118 +    341619 atctctggcttttaagatacaagaatgaggacccagcgcggtggctcacgcctaatcccagcactttgggaggctg---gggtgggtttatcacgaggtcaggagatcgagaccatcctgg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5676651 118 +  72422247 gtcactgacttttaagatacaagaatgaggacccagcgcggtggctcacgcctaatcccagcactttgggaggccg---gggtgggtggatcacgaggtcaggagatcgagaccatcctgg
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr3                 124537977 118 - 198365852 atcgctgacttttaagatgtaagaatgaggacctggcgtggtggctcacacctaatcccagcactttgggagtccg---gggtgggtgaatcatgaggccaggagatcgaaaccatcctgg
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124989186 118 - 192294377 atcgctgacttttaagatgtaagaatgaggacctggcgtggtggctcacacctaatcccagcactttgggagtccg---gggtgggtgaatcatgaggccaggagaccgagaccatcctgg
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122253990 118 - 180432695 ATCGCTGACTTTTAAGATGTAAGAATGAGGACctggcgtggcggctcacacttaatcccagcactttgggagtctg---gagtgggtgaatcatgaggctaggagatcgagaccatcctgg
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121509802 118 - 127223203 atcgctgacttttaagatataagaatgaggacctggcgtggtggctcacacctaatcccagctctttgggagtccg---aggtgggtgattcatgaggccaggagatcgagaccatcctgg
i chlSab2.chr21                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e canFam3.chr18                  4076205   0 +  55844845 C
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e nomLeu3.chr17                 44115008   0 -  99891981 C

a score=276962.000000
s hg38.chr14_KI270725v1_random    105235 202 +    172810 ctaacatggtgaaaccccatccctactaaaggtacaaaaaattaactgggcatggtgtcacgtgcctgtagtc----caagctactcaggaagctgaggcaggagaatcgcttgaacccgggagacagaggttgcagtgagctgagatcgtgccactgcactccagcctgggcgacagaaggagactctatctc-------aaaaaa-------aaaaaa
s panTro4.chrUn_GL393527          249208 209 +    341619 ctaacatggtgaaactccatccctactaaaaatgcaaaaaattaactgggcatgttggcaagtgcctgtagtc----caagctactcaggaagctgaggcagaagaatcacttgaatccgggaggcagaggttgcaatgagctgagatcgtgccactgcactccagcctgggtgacagaaggagactctgtctc-------aaaaagcaaaaagaaaaaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5676769 209 +  72422247 ctaacatggtgaaaccccacccctactaaaaatacaaaaaattaactggacatggtggtacgtgcctttagtc----caagctactcaggaagctgaggcaggagaatcgcttgaaccccggaggcagaggttgcagtgagctgagatcgtgccactgcactccagcctgggtgacagaaggagactccatctc-------aaaaaaaaaaaaaaaaaaa
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr3                 124538095 210 - 198365852 ctaacatggtgaaaccccgtctctactaaaaatacaaaacattagctgggcatggtagcgggtgcctgtagtccaagcaagctactcaggaggctgaggcaggagaatcacttggacctgggagacggaagttgcgatgagctgagattgcgccactgcactccagtctgggtgacagagcgagactccgtcac----------aaaaaaaaaaaaaaag
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124989304 217 - 192294377 ctaacatggtgaaaccccgtctctactaaaagtacaaaacattagctgggcatggtagcgggtgcctgtagtccaagcaagctactcaggaggctgaggcaggagaatcacttggacctgggagacggaagttgcgatgagctgagattgcgccactgcactccagtctgggtgacagagcgagactccgtcac---aaaaaaaaaaaaaaaaaaaaaaa
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122254108 218 - 180432695 ctaacatggtgaaaccccgtctctactaaaaatacaaaacattagctgggcatggtagagggtgcctgtagtccaagcaagctactcaggaggctgagacaggagaatcacttggacctgggagatggaagttgcgatgagctgagattgcaccactgcactccagtctgggtgacagagcgagactccgtcac--aaaaaaaaaaaaaaaaagaagaag
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121509920 204 - 127223203 ctaatatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtagcgggtgcctgtagtc----caagctactcaggaggctgaggcagaagaatcacttgaacctgggagacggaggttgcgatgagctgagattgcgcca------------ctgggtgacagagcgagacgtcgtctcaaaaaaaaaaaaaaaaaaaaaaagaa
i chlSab2.chr21                C 0 C 0
s canFam3.chr18                  4076205  24 +  55844845 ccaacatgg-------------------------------------------------------------------------------------------------atgacttttacacgg---------------------------------------------------------------------------------------------------
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e calJac3.chr8                  20049898 216 + 128169293 I
e nomLeu3.chr17                 44115008   0 -  99891981 C

a score=44587.000000
s hg38.chr14_KI270725v1_random    105437 18 +    172810 aagatataagaacgaggt
s panTro4.chrUn_GL393527          249417 18 +    341619 aggatataagaatgaggt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5676978 18 +  72422247 aagatataagaatgaggt
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr3                 124538305 18 - 198365852 aagatgtaagaatgaggc
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124989521 18 - 192294377 aagatgaaagaatgaggc
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122254326 18 - 180432695 aagatgtaAGAATGAGGC
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121510124 18 - 127223203 aagatgtaagaatgaggc
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20050114 18 + 128169293 aagatgtaagaatgaggc
i calJac3.chr8                 I 216 C 0
s canFam3.chr18                  4076229 11 +  55844845 -------aagagtgaagc
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e nomLeu3.chr17                 44115008  0 -  99891981 C

a score=1094131.000000
s hg38.chr14_KI270725v1_random    105455 349 +    172810 catgttccaagaaataaaggtggcctctgcatgctgaaaaaaataaagtacatagactcttcca-cagagccctcagaaagactgcagccctgcccaaaacttgatgttagccctgtgagtctcatttaaggcttctgaactccagaactgtaggct--taacagtcactttattgtaagatatgtatttcgtgataatttgttacagcagcaagaggaaTTTTATATAGTAATTGTATCATGAAAATGAGAACCATAATTGACAACTGCTTTTAATACTGCA-----------------CTTGGATGTTTGAAATCACGTACATGGAAATGATCTCT------ATGTGTATGAGGGAGGATAGCAAATTGATGC
s panTro4.chrUn_GL393527          249435 349 +    341619 catgttccaaggaataaaggtggcctctggatgctgaaaaaaatcaagtacatagattctgccg-catagccctcagaaagactgcagccctgcccaaaacttgatgttagccctgtgagtttcatttaaggcttctgaactacagaactgtaggat--taacggtcactttattgtaagatatgaagtttgtggtaattggttacagcagcaagaagaagtttataTTGTAATTGTATCATGAAAATGAGAACCATAATTTACAACTGCTTTTAATACTGCA-----------------CTTGGATGTTTGAAATCACGTACATGGAAATGATCTCT------ATGTGCATGAGGGAGGATAGCAAATTGATGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5676996 349 +  72422247 catgttccaaggaataaaggtggcgtctggatgctgaaaaatatcaagtacatagattctgcca-catagccctcagaaagactgcagccctgcccaaaacttgatgttagccctgtgagtctcatttaaggcttctgagctccagtactgtaggct--taacagtcactttattgtaagatatgaagtttgtggtaattggttacagcagcaagaggaagtttatataGTAATTGTATCATGAAAATGAGAACCATAATTTACAACTGCTTTTAATACTGCA-----------------CTTGGATGTTTGAAATCACGTACATGGAAATGATCTCT------ATGTGTATGAGGGAGGATAGCAAATTGATGC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44115008 366 -  99891981 catgtttcaaggaataaaggtggcctctggattctgaaaaaaatcaagtacatagattctgcca-catagccctcagaaagactgcagccctgcccacaacttgatgttagccctgtgagtctcatttaaggcttctgaactccagaactgtaggat--taacggtcactttattgtaagatatgatgtttgtggtaattggttacagcagcaagagtaagtttatataGTAATTGTATCATGAAAATGAGAACCATAATTTACAACTGCTTTTAATACTGCAACCTTCCCGTCTTCTTGCTTGGATGTTTGAAATCATGTACATGGATATGATCTCT------GTGTGTATGAGGGAGGACAGCAAATTGATGC
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124538323 365 - 198365852 catgttccaaggaatgaaggtggcctctggatgctgaaaaa-atcaagtacatagattctgcca-catagccctcagaaagactgcagccctgcccacaacttgatgttagccctgtgaatctcatttaaggcttctgaactccagaactgtaggat--taacagtcactttattctaagagatgaagtctgtggtaattggttgcagcagcaagaggaagtttatataGTAACTTTATCATGAAAGTGAGAACCATAATTTACAACTGCTTTTAATATTGCAACCTTCCCGCCTTCTTGCTTGGATATTTGAAATGAGGTACATGGATATGATCTCT------ATGTGTATGACGGAGGACAGCAAATTGATGC
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124989539 365 - 192294377 catgttccaaggaatgaaggtggcctctggatgctgaaaaa-atcaagtacatagattctgcca-catagccctcagaaagactgcagccctgcccacaacttgatgttagccctgtgaatctcatttaaggcttctgaactccagaactgtaggat--taacagtcactttattctaagagatgaagtctgtggtaattggttgcagcagcaagaggaagtttatataGTAACTTTATCATGAAAGTGAGAACCATAATTTACAACTGCTTTTAATATTGCAACCTTCCCGCCTTCTTGCTTGGATATTTGAAATGAGGTACATGGATATGATCTCT------ATGTGTATGACGGAGGACAGCAAATTGATGC
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122254344 365 - 180432695 CATGTTCCAAGGAATGAAGGTGGCCTCTGGATGCTGAAAAA-ATCAAATACACAGATTCTGCCA-CATAGCCCTCAGAAAGATTGCAGCCAGACCCACAACTTGATGTTAGCCCTGTGAATCTCATTTAAGGCTTCTGAACTCCAGAACTGTAGGAT--TAACAGTCACTTTATTCTAAGAGATGAAGTCTGTGGTAATTGGTTGCAGCAGCAAGAGGAAGTTTATATAGTAACTTTATCATGAAAGTGAGAACCATAATTTACAACTGCTTTTAATATTGCAACCTTCCCGCCTTCTTGCTTGGATATTTGAAATGAGGTACATGGATATGATCTCT------ATGTGTATGAGGGAGCACAGCAAATTGATGc
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121510142 365 - 127223203 catgttccaaggaatgaaggtggcctctggatgctgaaaaa-atcaagtacatagattctgcca-catagccctcagaaagattgcagccctgcccacaacttgatgttagccctgtgaatctcatttaaggcttctgaactccagaactgtaggat--taacagtcactttattctaagagatgaagtctgtggtaattggttgcagcagcaagaggaagtttatataGTAACTTTATCATGAAAGTGAGAACCATAATTTACAGCTGCTTTTAATATTGCAACCTTCCCGCCTTCTTGCTTGGATATTTGAAATGAGGTACATGGATATGATCTCT------ATGTGTATGAGGGAGGACAGCAAATTGACGC
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20050132 364 + 128169293 cacgttccaaggaatgaaggtggcctctagatgctgaaaaa-attaagtacatagtttctgcca-cagcatcctcagaaagaatgcagcccagcccacaacttgacattaaccctgtgagtctcatttcagacttctgaactccagaactgtaagat--taacagtcactttattgt-agatactaagtttgtggcaactgattccagcagcaagagtaagttgatataGTGATTTTGTCATGAAGTTGAGAACCGTAATTGACCACTGCTTTTAATATTGCACCCTTCCCAGCTTCTTGCTTGGATGTTTGAAATCATGTGCATGGATATGATCTCT------ATGTGTATGAGGGAGTATAGCAAATTGATGC
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4076240 355 +  55844845 catgagccaaggaatgcaggcaatctccacatgctggaaat-attgaaggaaaacattttcccattaaagcctgcagtaggaaggcagccctcccgataaccttgactttctgcttttggtcctacttcagacttt----------gacttgaagataataacattta-tttgttttaattcgctaaattggtattaatctgttacagc------aagaagctaatacaCTAATCTTATCTCAAGAGAGGGGACTATGATTTATCACTGGTCCTACAACTGCAACCTTTTTGT-TCCTTGGTTGGATGTTTGATATTGTGGATATGGGTATG-TCTCTACTTGCATGTGTATGGAGGGGTATAGCACACTCACAC
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I

a score=9105.000000
s hg38.chr14_KI270725v1_random    105804 6 +    172810 CAAAA-T
s panTro4.chrUn_GL393527          249784 6 +    341619 CAAAA-T
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5677345 6 +  72422247 CAAAA-T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44115374 6 -  99891981 CAAAA-T
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124538688 7 - 198365852 CAAAAAT
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124989904 7 - 192294377 CAAAAAT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122254709 7 - 180432695 caaaaat
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121510507 7 - 127223203 CAAAACT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20050496 7 + 128169293 CCAAAAC
i calJac3.chr8                 C 0 C 0
s tarSyr2.KE946558v1               87945 6 +   1121937 CATAA-T
i tarSyr2.KE946558v1           N 0 I 1013
s canFam3.chr18                  4076595 7 +  55844845 TAATAAT
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I

a score=102041.000000
s hg38.chr14_KI270725v1_random    105810 38 +    172810 AACGCAAATACAA---------------------------------TCTTAAACTTATTTCTATGTAGGTT
s panTro4.chrUn_GL393527          249790 39 +    341619 AATGCAAATGCAA--------------------------------ATCTTACATTCATTTCTATGTAGGTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5677351 39 +  72422247 AACGCAAATGCAA--------------------------------ATCTTACACTCATTTCTATGTAGGTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44115380 39 -  99891981 AATGCAAATGCAA--------------------------------ATCTTACACTCATTTATATGTAGTTT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124538695 39 - 198365852 AATGCAAATGCAA--------------------------------ATCTTACATTCATTTATATGTAGGTT
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124989911 39 - 192294377 AATGCAAATGCAA--------------------------------ATCTTACATTCATTTATATGTAGGTT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122254716 35 - 180432695 aatgcaaatgcAA--------------------------------ATCT----TTCATTCATATGTAGGtt
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121510514 39 - 127223203 AATGCAAATGCAA--------------------------------ATCTTACATTCATTTATATGTAGGTT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20050503 39 + 128169293 AATGTAAATGCAA--------------------------------ATCTTACACTCATTTATATGTAGATT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4076602 71 +  55844845 GCAGTATATGCAAAGCACATATTTGCTTATGCTCAGATTTAatatatattatatatattattatgtatatt
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               87951 1013 +   1121937 I

a score=6333.000000
s hg38.chr14_KI270725v1_random      105848 5 +    172810 ---TCTTT
s panTro4.chrUn_GL393527            249829 5 +    341619 ---TCATT
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5677390 5 +  72422247 ---TCATT
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44115419 5 -  99891981 ---TAATT
i nomLeu3.chr17                  C 0 C 0
s rheMac3.chr3                   124538734 5 - 198365852 ---TAATT
i rheMac3.chr3                   C 0 C 0
s macFas5.chr3                   124989950 5 - 192294377 ---TAATT
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122254751 5 - 180432695 ---taatt
i papAnu2.chr3                   C 0 C 0
s chlSab2.chr21                  121510553 5 - 127223203 ---TAATT
i chlSab2.chr21                  C 0 C 0
s calJac3.chr8                    20050542 5 + 128169293 ---TAATG
i calJac3.chr8                   C 0 C 0
s tupBel1.scaffold_70142.1-11303       835 5 +     11303 ---tattt
i tupBel1.scaffold_70142.1-11303 N 0 I 3364
s canFam3.chr18                    4076673 5 +  55844845 atata---
i canFam3.chr18                  C 0 C 0
e gorGor3.chr9                    48954961 7782 + 121947112 I
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 87951 1013 +   1121937 I

a score=2351043.000000
s hg38.chr14_KI270725v1_random      105853 714 +    172810 TA-ATCTTTGAAATTAAAATGAAATTAAAGAACTATGATATTTTGATGAAATTAGACTAAAATGAACAATAAGAA-AATAAGAACTTAC--TTGTATTCTTTATATGGTCAGTAAAGAAGTGATAGTTGAAAAAAACAAGGTCAAATGAAGGTGATGATTTAGGAAGTTGGAAAGATAGC-CTAAACTACAAAATGGTATATAACTAGTGAACACTTAGACACACTGATTGATGAACTTC--AGCTTTTGGATTGGTGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATCTGCAATCTCCTTGTGGAAAAACAGGCGAAAACACATTTCAGCCTAAT---AAGATTTACCTACTAATGAGTCAAGACTTGATCCATTTGTCCTCGTAATTCAAAAGCTAATTCAAATACTGATTTGATATATTGTGTGAACAACCGTTGCTGATTATCATCACAT--ACCTGGCATTCTCTTTTATCTGATATCTGAAATATTTGGTAATTCCTGGACTTTCTCTTTTCAAACCCAGTACAGTTTAATTTCAATCTTAGA---ACAGTTGTCTTTGAGAAATTCTTCCCTCTACTGCATCTGTGAATGGGCATAGCATGGTTACATACGTACTATCACCACAGAGAACATTTGTTGAAT---TAAAGCCAAAGTT--TAAAGCAACAGCTTTAACTCACTGGTTTTACTAATAT----TTTCCTCCCCAA-----------TAGCCACAAAAATA-
s panTro4.chrUn_GL393527            249834 714 +    341619 TA-ATCTTTGAAACTAAAATGAAATTAAAAGATTGTGATCTTTTGATGAAATTAGACTAAAATGAACAATAACAA-AATAAGAACTTAC--TTATATTCTTTATATGGTCAATAAAGAAGTGATAGTGGAAAAAAACAAGATCAAATGAAGGTGATGATTTAGGAAGTTGGAAAGATAGC-TGAAACTACAAAATGGTATATAACCAGTGAACACTTAGACACACTGATTGATGAACTTC--AGCTTTTGGCTTGGTGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTCCTTGTGGAAAAACAGGGGAAAACACATCTCAGCCTAAT---AAGATTTATCTACTAAAGAGTCTAGACTTGATCCATTTGTCATTGTAATTCAAAAGCTAATTCAAATACTGATTTGATGTATTGTGTGAACAACCATTGCTGATTATCATCGCAT--ACCTGGCATTCTCTTTTATCTGGTATCTAAAATATTTGGTAATTCCTGGACTTTCTCTTTTCACACCCAGTACGGTTTAATTTGAGTCTTAGA---ACAGTTGTCTTTGAGAAATTCTTCCCTCTACTGCATCTGTGAATGGGCATGGCATGGTTATGTACATACTATCACCACAGAGAACATTTGTTGAAT---TAAAGCCAAAGTT--TAAAGCAAGAGCTTTAACTTACTCTTTTTACTAATGT----ATTCCTCCCCAA-----------TAGCCACAACAATA-
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5677395 713 +  72422247 TA-ACCTTTGAAATTAAAATGAAATTAAAGGGTTGTGATATTTTGATGAAATTAGACTAAAATGAACAATAACAA-AATAAGAACTTGC--ATATATTCTTTATATGGTCAATAAAGAAGTGATAGTGGAAAAAAACAAGATCAAATGAGGGTGATGATTTAGGAAGTTGGAAAGATAGC-TTAAACTACAAAATGGTATATAACTAGTGAACGCTTAGACATATTGATTGATGAACTTC--AGCTTTTGGCTTGGTGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTTCTTGTGGAAAAACAGGGGAAAACACATCTCAGCCTAAT---AAGATTTATCTACAAAAGAGTCAAGACTTGATCCATTTGTCCTTGTAATTCAAAAGCTAATTCAAATACTGATTTGATATATTGTGTGAACAACCATTGCTGATTATCATTGCAT--ACCTGGCATTCTCCTTTATCTGATATCTAAAATATTGGGTAATTCCTGGACTTTCTCTTTTCAAACCCAGTATGGTTTAATTTCAATCTTAGA---ACAGTTGTCTTTGAGAAATTCTTCCCTCTACTGCATCTGTGAATGGGCATAGCATGGTTACGTACATACTGTCGCCCCAGAGAACATTTGTTAAAT---AAAAGCCAAAGTT--TAAAGCAACAGCCTTAACTCACTGGTTTTACTAATGT-----TTCCGCCCCAA-----------TAGCCACAACAATA-
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44115424 711 -  99891981 TA-ATCTTTGAAATTAAAATGAAATTAAAGGATTATTAAATTTTGATGAAATTAGTCTAAAATGAACAATAACAA-AATAAGAACTTAC--TTATATTCTTTATATGGTCAACAAAGAAGTGATAG-AGGGAAAAACAGGAACAAATGAAGGTGATGATTTAGGAAGTTGGAAAGATAGC-TTAAAATACAAAACGGTATATAACTAGTGAACACTTAGAGGCATTGATTGATGAACTTC--AGCTTTTGGCTTGGTGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTCCTTGTGGAAAAAT--GGGAAAAGACATCTCATTATAAT---AAGATTAATCTACTAAAGAGTCAAGACTTGATCCATTTGTCCTTGTAATTCAAAAGCTAATTCAAATACTGATTTGATATATTGTGTTAACAACAATTGCTGATTATCATCGCAT--ACCTGGCATTCTCTTTTATCTGATATCTAAAATATTTGTTAATTTCTGGACTTTCTCTTTTCATACCCAGTACAGTTTAATTTCAATCTTAGA---ACAGTTATCTTTGAGAAATTCTTCCCTTTATTGCATCTGTGAATGGGCATAACATGGATACATATATACTGTCACCCCAGAGAACATTTGTTAAAT---TAAAGCCAAAGTT--TAAAACAACAGCTTTAACTCACTGGTTTTACTAATTT----TTTCCTCCCCAA-----------TAGCCACAACAATA-
i nomLeu3.chr17                  C 0 C 0
s rheMac3.chr3                   124538739 701 - 198365852 TA-ATCTTTGAAATTAAAATGAAATTAAAGGATTATTAAATTTTGATGAAATTAGAGTAAAATGAACAATAAAAA-A--------------TAACATTCTTTATATGGTTAATAAGGAAGTGATAGTGGAAAAAAGCAAGAACAAATGAAGATGATGATTTAGGAAGTAGAAAAGATAGC-TTAAACTACAAAACTGTATATAACTAGTGAACACTTAGAGACATTGGTTGATGAACTTC--AGCTTTTGGCTTGGTGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTCCTTGTGGAAAAACAGGGGGAAAGACATCTCAGCATAAT---AAGATTAATCTACTAAGGAGTCAAGACTTGATCCATTTGTCCTTGTAATTCAAAAGCTAATTCAAATACTGATTTGATATATCGTGTTAACAACCATTGCTGATTATCATCGCAT--ACCTGGCATTCTCTCTTATCTGACATCTAAAATATTTGGTAATTCCTGGACTTTCTCTTTTCAAACCCAGTACGGTTTAATTTCAATCTTAGA---ACAGTTGTCTTGGAGAAATTCTTCCCTTTAGTGCATCTGTGAATGGGAATAACATGGGTACATATATACTGTCACCCCAGAAAACATTTGTTAAAT---TAAAACCAAAGTT--TCAAGCAACAGCTTTAACTCACTGGTTTTACTAATTT-----TTCCTCCACAA-----------TAGCCATAACAATA-
i rheMac3.chr3                   C 0 C 0
s macFas5.chr3                   124989955 701 - 192294377 TA-ATCTTTGAAATTAAAATGAAATTAAAGGATTATTAAATTTTGATGAAATTAGAGTAAAATGAACAATAAAAA-A--------------TAACATTCTTTATATGGTTAATAAGGAAGTGATAGTGGAAAAAAGCAAGAACAAATGAAGGTGATGATTTAGGAAGTTGAAAAGATAGC-TTAAACTACAAAACTGTATATAACTAGTGAACACTTAGAGACATTGAATGATGAACTTC--AGCTTTCGGCTTGGTGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTCCTTGTGGAAAAACAGGGGGAAAGACATCTCAGCATAAT---AAGATTAATCTACTAAGGAGTCAAGACTTGATCCATTTGTCCTTGTAATTCAAAAGCTAATTCAAATACTGATTTGATATATCGTGTTAACAACCATTGCTGATTATCATCGCAT--ACCTGGCATTCTCTATTATCTGACATCTAAAATATTTGGTAATTCCTGGACTTTCTCTTTTCAAACCCAGTACGGTTTAATTTCAATCTTAGA---ACAGTTGTCTTGGAGAAATTCTTCCCTTTAGTGCATCTGTGAATGGGAATAACATGGGTACATATATACTGTCACCCCAGAAAACATTTGTTAAAT---TAAAACCAAAGTT--TCAAGCAACAGCTTTAACTCACTGGTTTTACTAATTT-----TTCCTCCACAA-----------TAGCCATAACAATA-
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122254756 702 - 180432695 ta-atctttgaaattaaaatgaaattaaaggattattaaattttgatgaaattagagtaaaatgaacaataaaaata--------------acatattcttTATATGGTCAATAAGGAAGTGATAGtggaaaaaagcaagaacaaatgaAGGTGATGATTTAGGAAGTTGAGGAGATAGC-TTAAACTACAAAACTGTATATAACTAGTGAACACTTAGAGACATTGATTGATGAACTTC--AGCTTTTGGCTTGGTGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTCCTTGTGGAAAAACAGGGGGAAAGACATCTCAGCATAAT---AAGATTAATCTACTAAGGAGTCAAGACTTGATCCATTTGTCCTTGTAATTCAAAAGCTAATTCAAATACTGATTTGATATATCGTGTTAACAACCATTGCTGATTATCATCGCAT--ACCTGGCATTCTTTTTTATCTGACATCTAAAATATTTGGTAATTCCTGGACTTTCTCTTTTCAAACCCAGTACGGTTTAATTTCAATCTTAGA---ACAGTTGTCTTGGAGAAATTCTTCCCTTTAGTGCATCTGTGAATGGGAATAACATGGGTACATATATACTGTCACCCcagaaaacatttgttaaat---taaaGCCAAAGTT--TCAAGCAACAGCTTTAACTCACTGGTTTTACTAATTT-----TTCCTCCCCAA-----------TAGCCATAACAATA-
i papAnu2.chr3                   C 0 C 0
s chlSab2.chr21                  121510558 701 - 127223203 TA-ATCTTTGAAATTAAAATAAAATTAAAGGATTTTTAAATTTTGATGAAATTAGAGAAAAATGAACAATAAAAA-A--------------TAACATTCTTTATATGGTCAATAAGGAAGTGATAGTGGAAAAAAGCAAGAATAAATGAAGGTGATGATTTAGGAAGTTGAAGAGATAGC-TTAAACTACAAAACTGTATATAACTAGTGAACACTTAGAGACATTGATTGATGAACTTC--AGCTTTTGGCTTGGTGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTCCTTGTGGAAAAACAGGGGAAAAGACATCTCAGCATAAT---AAGATTAATCTACTAAGGAGTCAAGACTTGATCCATTTGTCCTTGTAATTCAAAAGCTAATTCAAATACTGATTTGATGTATCGTGTTAACAACCATTGCTAATTATCATCGCAT--ACTTGGCATTCTCTTTTATCTGACATCTAAAATATTTGGTAATTCCTAGACTTTCTCTTTTCAAACCCAGTATGGTTTAATTTCAATCTTAGA---ACAGTTGTCTTGGAGAAATTCTTCCCTTTAGTGCATCTGTGAATGGGAATAATATGGGTACATATAtactgtcaccccagaaaacatttgttaaat---taaagccaaagtt--TCAAGCAACAGCTTTAACTCACTGGTTTTACTAATTT-----TTCCTCCCCAA-----------TAGCCATAACAATA-
i chlSab2.chr21                  C 0 C 0
s calJac3.chr8                    20050547 716 + 128169293 TA-ATCTTTGAAATTAAAATAAAATTAAAGGATTATTAAATTTTGGTGCAATTAGACTAAAATGAACACTAACAA-AATAAGAAGCTAC--TTATATTAATTATATGGTCAATAAGGAAGTGATAGTGGAAAAAAACAAGAACAAATGAAGGTGATGATTTAGGAAGTTGGAAAG--AGC-TTAAACTACAAAACTGTATATAACTAGTGAACAGTTAGAGACATTGATTGATGAACTTC--AGTTTTTGGCTTAGCGAGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTCCTTGTGGAAAAACAGGGGAAAAGACATCCCAGCATAAT---AAGATTAATCTACTAAAGAGTCAAGACTTGATCCATTCGTCCTTGTAATTTAAAAGCTAATTCAAATACTGATTTGATATATTGTGTTAACAATCATTGCTGATTATCATCGCATACACCTGGCATTCTCTGTTATCTGACATCTAAAATATTTGG-AATTTCTGGACCTTCTCTTTTCAAATCCAGTAGGGTTTCATTTTAGTCTTAGATTCTCAGTTGTTTTTGAGAAATTCTTACCTCTAGTGCCTCTGTGAATGGGAATAACATGGATACATATATACTGTCACCCCAGAGAAAATGTGTTAAAT---TCAAGTAGAAGTT--TCAAGCAACAGCTTTAACTCACTGGTTTCACTAATTT----TTTCCTCCCCAA-----------TAGGTATAACAATA-
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4076678 732 +  55844845 tatatatatGGAGAGAGAA-AGAATTCAAAGATTATTAAATTTGGA-GAAAGTTGACTAAAGTTCACAATAATGG-GATAGGGAGTTGCTGTCTTATTTTTATTATGATTAATAAGTAAGTGAGAGT-GAAAAAAACAAGAATAAATGAAGGTGATAATTTAGGAAGTTGGAAAGGCAGCATTAAGCTACAAAACTGTATATAACTTGTGAGCACTTAGAGACATTGATTGATGAACTATAGAGCTTCTGGCTTAGTGGGAGCATAAAATGAGAGCAGCTGAGGTTTGCAAATTTGTAATCTCCCTGTGGAAAAACATGGAAAAAGACATCTCAGCATAATAAGAAGAAGAATCTATTAAAGACTTAAGACTTGATCCATTTGTCCTTGTAATTCAAAAGCTAATTCATATACTGATCTGATATATTGTGTTAACAGCCATTGCTGATTATCATAGCAC--ACCTGTCATTCTCTTGTATCTGACATCTAAAATATTCAGTAATCTC-GGACTTTCTCTTC---AACCGTATATAGCCTATTTTCAATCTTAGT--------TTCCTCTGAGAAATCTTTCTCTCTACCACATTTACGAATGTGGAAACCATGGATGCCTACATAATGTCACCCCAGACAACATGTGTTAAATGCATTAAATTTGCGTTAGTATATCAACAGCTTTCACTCATCAATTTTGCTAATTTGTTTTCTCCTCTCCAAATTTATGTCTCCATCCACATAAATGA
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 87951 1013 +   1121937 I

a score=16013.000000
s hg38.chr14_KI270725v1_random      106567 6 +    172810 TTGATA-
s panTro4.chrUn_GL393527            250548 6 +    341619 TTGATG-
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5678108 6 +  72422247 TTGATA-
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44116135 6 -  99891981 TTGATA-
i nomLeu3.chr17                  C 0 C 0
s rheMac3.chr3                   124539440 6 - 198365852 TTGATA-
i rheMac3.chr3                   C 0 C 0
s macFas5.chr3                   124990656 6 - 192294377 TTGATA-
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122255458 6 - 180432695 TTGATA-
i papAnu2.chr3                   C 0 C 0
s chlSab2.chr21                  121511259 6 - 127223203 TTGATA-
i chlSab2.chr21                  C 0 C 0
s calJac3.chr8                    20051263 6 + 128169293 TTTATA-
i calJac3.chr8                   C 0 C 0
s tarSyr2.KE946558v1                 88964 6 +   1121937 TTTATG-
i tarSyr2.KE946558v1             I 1013 I 2236
s canFam3.chr18                    4077410 7 +  55844845 TTAACTT
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e saiBol1.JH378145                17633427 32819 +  18371965 I

a score=582438.000000
s hg38.chr14_KI270725v1_random      106573 190 +    172810 CCCTCACACCTTTTAACATAAAGCTTGGTGTTGTCTATTTTTCAGGTGCTGTCATCTATATGATCTCAGTATTTTAAAAATCAGCTTCCAGCCCATATggtggctcatgcttgtaataccagcagttgaagaggctgaaatgagaggattccttgagcccaggagttcaagagcaatctgggcaacatag
s panTro4.chrUn_GL393527            250554 190 +    341619 CCCTCACACCTTCTAACATAAAGCTTGGTGTTGTCTATTTTTCAGGTGCTGTCATCTATATGATCTCAGTATTTTAAAAATCAGCTTCCAGCCCATATggtggttcatgtttgtaatatcagcagttgaagaggctgaaatgagaggattccttgagcccaggagttcaaaagcaacctgggcaacatag
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5678114 190 +  72422247 CCCTCACACCTTTTAACATAAAGCTTGGTGTTGTCTATTTTTCAGGTGCTGTCATCTATATGATCTCAGTATTTTAAAAATCAGCTTCCAGCCCTTATggtggctcgtgcctgtaataccagcagttgaagaggctgaaatgagaggattctttgagcccaggagttcaagagcaacctgggcaacatag
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44116141 190 -  99891981 CCCCTACACCTTTTAACATAAAGCTTGGTGTTGTCTATTTTTCAGGTGCTGTCATCTATATGATTTCAGTATTTTAAAAATCAGCTTCCAGCCCATATggtggctcatgcctgtaataccagcagtttaagaggctgaaatgagaggattctttgagcccaggagttcaagagcaacctgggcaacatag
i nomLeu3.chr17                  C 0 C 0
s rheMac3.chr3                   124539446 190 - 198365852 TTCCCACACCTTTTAACATAAAGCTTCGTGTGGTCTATTTTTCAGGTGCTGTCATCTATATGATTTCAGTATTTTAAAAATCAGCTTCCAGCCCATATggtggctcatgcctgtaataccagcattttaagagactgaaatgagaggattctttgagcccaggacttcaagagcaacctgggcagtatag
i rheMac3.chr3                   C 0 C 0
s macFas5.chr3                   124990662 190 - 192294377 TCCCCACACCTTTTAACATAAAGCTTCGTGTGGTCTATTTTTCAGGTGCTGTCATCTATATGATTTCAGTATTTTAAAAATCAGCTTCCAGCCCATATggtggctcatgcctgtaataccagcattttaagagactgaaatgagaggattctttgagcccaggacttcaagagcaacctgggcagtatag
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122255464 190 - 180432695 TCCCCACACCTTTTAACATAAAGCTTCGTGTGTTCTATTTTTCAGGTGCTGTCATCTATatgatttcagtattttaaaaatcagcttccAGCccatatggtggctcatgcctgtaataccagcattttaaGAGACTGAAATGAGGggattctttgagcccaggacttcaagagcaacctgggcagtatag
i papAnu2.chr3                   C 0 C 0
s chlSab2.chr21                  121511265 190 - 127223203 TCCCCACACCTTTTAACATAAAGCTTCATGTGGTCTATTTTTCAAGTGCTGTCATCTATATGATTTCAGTATTTTAAAAATCAGCTTCCAGCCCATATggtggctcatgcctctaataccagcattttaagagattgaaatgagaggattctttgagcccagggcttcaagagcaacctgggcagtatag
i chlSab2.chr21                  C 0 C 0
s calJac3.chr8                    20051269 188 + 128169293 TCCCC-CACCTTTTAACATAAAGCTTGGTGTTGTCTATTTTTCAGGTACTGTCATCTATATGATTTCAGTATTTT-AAAATCAGCTTCCAGCCCATATggtggcttatgtctgtaataccagtattttaagaggctgaaataagaggattctttgagcccaggagttcaagagcaacctggacaacatag
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4077417 104 +  55844845 CCCCTATTTCCTTTACCATGAAGGCTGGGGCCTTCCGGTTCTTCTGTACTGTCATCTATATGAT-TCAGTGTTTGAAAAATTAATTCCCATT------------------------------------------------------GATTTCT-------------------------------ACATAG
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I

a score=468800.000000
s hg38.chr14_KI270725v1_random      106763 182 +    172810 caagacccagtctctatcaaaagtt---------aa------------aaaaaaaaggtgggcatggtgatgtgcacctgttgtcctggctatttgggaggccaaggtggaaggattgcttgagctggggaggttgaatctgcagtaagcagtgattgcaccactacaccccagcctgggcaacaaagaaagaccctatctc-a
s panTro4.chrUn_GL393527            250744 184 +    341619 caagacccagtctctatcaaaaggt---------aa----------gaaaaaaaaaagtgggcatggtgctgtgcacctgttgtcctagctatttgggaggccaaggtggaaggattgcttgagcttgggaggctgaggctgcagtgaacagtgattgcaccactgcaatccagcctgggcaacaaagcaagaccctatctc-a
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5678304 189 +  72422247 caagacccagtctctatcaaaagtt---------aaa------aaaaaaaaaaaaaggtgggcatggtgatgtgcacctgttgtcctagctatttgggagtccaaggtggaaggattgcttgagcttgggaggttgaggctgcagtgagcagtgactgcaccactgcactccagcctgggcaacaaagcaagaccttatctcaa
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44116331 187 -  99891981 caagacccagtctctaccaaaagtt---------at-------taaaaaagaaaaaggtgggcatggtggtgtgcacctgttgtcctagctatttgagaggccaaggtggaaggattgcttgagcttgggaggttgaggctgcagtgagcagtgattgcaccactgcactccagcctgggccacaaagcaaatccctatctc-a
i nomLeu3.chr17                  C 0 C 0
s rheMac3.chr3                   124539636 183 - 198365852 caagatccagtctctaccaaaagtt-------------------aaaaaaaaaaaagctgggcatgatggtgtgcacctgttgttctagctatttgggaggccgaggtggaaggattgcttgagcttgggggg-tgaggctgcagtgagcagtgattgcaccactgtactccagcctgggcaccaaagcaagactctaactc-a
i rheMac3.chr3                   C 0 C 0
s macFas5.chr3                   124990852 185 - 192294377 caagatccagtctctaccaaaagtt------------------aaaaaaaaaaaaagctgggcatgatggtgtgcacctgttgttctagctatttgggaggccgaggtggaaggattgcttgagcttggggggttgaggctgcagtgagcagtgattgcaccactgtactccagcctgggcaccaaagcaagactctaactc-a
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122255654 203 - 180432695 caagatccagtctctaccaaaagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagctgggcatgatggtgtgcacctgttgttctagctatttgggaggctgaggtggaaggattgcttgagcttggggggttgaggctgcagtgagcagtgtttgcaccactgtactccagcctgggcaccaaagcaagactctaactc-a
i papAnu2.chr3                   C 0 C 0
s chlSab2.chr21                  121511455 194 - 127223203 caagatccagtctctaccaaaagtt---------aaaaaaaaaaaaaaaaaaaaaagctaggcatggttgtgtgcacctatggtcctagctatttggaagactaaggtggaaggattgcttgagcttgggaggttgaggctgcagtgagcagtgattgcaccactgtattccagcctgggcaccaaagcaagaacctaactc-a
i chlSab2.chr21                  C 0 C 0
s calJac3.chr8                    20051457 156 + 128169293 caagacccagtctgtaccagaagtt----------------------agaaaaatagctgggcatggtggtgcacacctgttgtactagctacttgggaggctgaggtggaaggattgcttcagcttgaaaggtcgaggtcgcagtgaacagt-------------------------gGCAATAAAGCAAGACCCTATCCC-A
i calJac3.chr8                   C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e canFam3.chr18                    4077521   0 +  55844845 C
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I

a score=1367508.000000
s hg38.chr14_KI270725v1_random      106945 466 +    172810 aaaaaTATATATAATACAAATAAAAATCAGCTCTCATTGATTTCTACATAAATATTCACAGATGATGTCCATGTAGAAATAAATAATTATATATCTGACAATGGGTCCATATGATCTTCAAAATGTAAAATGCCTATCTGTGTAATTGACTGCTCAGTCTCATTAACGAATATTGATTCAATTCTACTTTCTTGTTCTAGAT-A-AATTATGTAATCTAGCTTTTCGTTTCACTTATTTATT----GATAACAACAGGAAGAATGACAAGATATCTATTCTGGAAAATT----ACTCTTGTAGGAGTAAAGATGAAACAAAGATAGAATTGCATGGAAAACT--------AGAAAAAAGTATGGTCTTCCAATAATCTATCACATCATATACAAAAGGCCTCAT-AAAACTCAGATATTTTATCTAAAAATGTAATTTTCATCTTAGGAATGATCAAAGCATGAGACTACAGTTGTATTAAA---------------------ATG
s panTro4.chrUn_GL393527            250928 466 +    341619 aaaaatatatataataaaaataaaaatCAGCTGTCATTGATTTCTATGTAAATATGCACAGGTGATGTCCATATAGACATAAATAATAATATTTCTGACAATGGGTCCATATGATCTTCAAAATCTAAAATGCCTATCTGTGTAATTGACTGGTTAGTCTCATTAATGAATATAGATTCAATTCTAATTTCTTGTTCTAGAT-A-AATTATATAATCTAGCTTTTCATTTCACTTATTTACT----GATAACAACAGGAAGAATGACAACATATCTATTTTGGAAAATT----ACTCTTGTAGGAGTAAAGATGAAACAATGATAGAATTGCACGGAAAACT--------AGAAAAAAGTATAGTCTTCTGATATTCTATCACATCACATACTAAAGGCCTCAT-AAAACCCAGATATTTTATCTAAAAATGTTACTTTCATCATAGGAATGATCAAAGCATGAGACTACAATTGTATTAAA---------------------ATG
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5678493 467 +  72422247 aaaaatatatataataaaaataaaaatCAGCTCTCATTGATTTCTACATAAATATGCACAGGTGATGCCCATATAGACATAAAGAATAATATATCTGACAATGGGTCCATATGATCTTCAAAATGTAAAATGCCTGTCTGTGTAATTGACTGGTTAGTCTCATTAATGAATATAGATTCAATTCTACTTTCTTGTTCTAGAT-A-AATTATATAATCTAGCTTTTCGTTTCACTTATTTACT----GATAACAACAGGAAGAATGACAAGATTTCTATTTTGGAAAATT----ACTGTGGTAGGAGTAAAGATGAAACAATGATAGAATTGCATGGAAAACT--------AGAAAAAAGTATGGTCTTCTGACATTCCATCACATCATATACTAAAGGCCTCATAAAAACTCAGATATGTTATCTAAAAATGTTATTTTCATCTTAGGAATGATCAAAGCATGAGACTAGAATTGTATTACA---------------------ATG
i ponAbe2.chrUn                  C 0 I 4
s nomLeu3.chr17                   44116518 456 -  99891981 aaaaaTATATATAATAAAAATAAAAGTCTGCTCTCATTGATTTCTACATAAATATGCACGGGTGATGTCCATACAGATATAAATAATAATATATCTGACAATGGGTCCATATGATCTTCAAAATGTAAAATGCCTATCTGTGTAATTGACTGTTTCGTCTCATTAATGAATAGAGATTCAATTCTACTTTCTTCTTCTAGAT-A-AAATATATAATCTAGCTTTTTGTTTCACTTATTTACT--------------GGAAGAATGACAAGATATCTATTTTGGAAAATT----ACTCTGGTAGGAGTAAAGATGAAACGATTATAGAATTGCACGGAAAACT--------AGAGAAAAATATGGTCTTCTGATATTCTATCACATCATATCCTAAAGGCTTCAT-AAAACTCAGATATTTTATCTAAACATGTCATTTTCATCTTAGGAATGATCGAAGCATGAGACTAGAATTGTATTACA---------------------ATG
i nomLeu3.chr17                  C 0 C 0
s rheMac3.chr3                   124539819 462 - 198365852 aaaaaTACATACAATAAAAATAAAAATCAACTCTCATTGATTTTTGCATAAATATGCACAGGTGAGGTCAATGTAGGTATAAATAGTAATGTATCTGGCAACAGGTCCATATGATCTGCAAAATGTAAAATGCCTATCTGTGTAATTGACTGGTTAGTCTCATTAATGTATATAGATTCAATTCTACTTTCTTGTTCTAGAT-A-AAATATGTAATCTAGCTTTTCATTTCACTTATTCACT----GATAACAAC---AAGAATGACAAGATACCTATTTTGGAAAATT----ACTCTGGTAGGAGTAAAGATGAAACAATGATAGAATTGCATGGAAAACT---------GAGAAAAATATGATCTTCTGATATTCTATCACATCATATCCTAAAGGCTTCAT-AAAGCTCAGATATTTTATCTAAAAATGTTATTTTCATCTTAGGAATGATCAAAGCGTGAGACTAGAATTGTGTTACA---------------------ATG
i rheMac3.chr3                   C 0 I 4
s macFas5.chr3                   124991037 462 - 192294377 aaaaaTACATACAATAAAAATAAAAATCAACTCTCATTGATTTTTGCATAAATATGCACAGGTGAGGTCAATGTAGGTATAAATAGTAATGTATCTGGCAACGGGTCCATATGATCTGCAAAATGTAAAATGCCTATCTGTGTAATTGACTGGTTAGTCTCATTAATGTATATAGATTCAATTCTACTTTCTTGTTCTAGAT-A-AAATATGTAATCTAGCTTTTCATTTCACTTATTCACT----GATAACAAC---AAGAATGACAAGATACCTATTTTGGAAAATT----ACTCTGGTAGGAGTAAAGATGAAACAATGATAGAATTGCATGGAAAACT---------GAGAAAAATATGATCTTCTGATATTCTATCACATCATATCCTAAAGGCTTCAT-AAAGCTCAGATATTTTATCTAAAAATGTTATTTTCATCTTAGGAATGATCAAAGCGTGAGACTAGAATTGTGTTACA---------------------ATG
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122255857 462 - 180432695 aaaaatacatataataaaaataaaaatcaactctcattgatttttgcataaatatGCACAGGTGAGGTCAATGTAGGTATAAATAGTAATGTATCTGGCAACGGGTCCATATgatcttcaaaatgtaaaatgcctATCTGTGTAATTGACTGGTTAGTCTCATTAATGTATATAGATTCAATTCTACTTTCTTGTTCTAGAT-A-AAATATGTAATCTAgcttttcatttcacttattcACT----GATAACAAC---AAGAATGACAAGATACCTATTTTGGAAAATT----ACTCTGGTAGGAGTAAAGATGAAACAATGATAGAATTGCatggaaaact---------gagaaaaatatgaTCTTCTGATATTCTATCACATCATATCCTAAAGGCTTCAT-AAAGCTCAGatattttatctaaaaatgttattttcatcttAGGAATGATCAAAGCGTGAGACTAGAATTGTATTACA---------------------ATG
i papAnu2.chr3                   C 0 C 0
s chlSab2.chr21                  121511649 456 - 127223203 aaaaaTACATACAATAAAAATAAAAATCAGCTCTCACTGACTTTTGCATAAATATTCACCGGTTAGGTCAATGTAGGTGTAAATAGTAATGTATCTGGCAATGGATCCATATGATCTTCAAAATGTAAAATGCCTATCTGTGTAATTGACTGGTTAGTCTCATTAATGAATATAGATTCAATTCTACTTTCTTGTTCTAGAT-A-AAATATATAATCTAGATTTTCATTTCACTTTTTCACT----GATAACAACAGGAAGAATGACAAGATACCTATTTTGGAAAATT----ACTCTGGTAGGAGTAAAGATGAAACAATGATAGAATTGCATGGAAAACT---------GAGAAAAATATGGTCTTCTGATATTCTATCACATCATCTCCTAAAGGCT----------TCAGATATTTTATCTAAAAATGTTATTTTCATCTTAGGAATGATCAAAGCGTGAGACTAGAATTGTATTACA---------------------ACG
i chlSab2.chr21                  C 0 I 4
s calJac3.chr8                    20051613 455 + 128169293 AGAAATACACATAATTGAAATAAAAATCAGCTCTCATTAATTTCTACATAAATATGCACAGGCCATGTCCATATAGAAATACATA-----ATATCTGACAATGGGCCGATATAATCTTCAAAATGTAAAATGA----CTGTGTAATTGACTGATTAGTCTTATTAAAGAATATAGATTCAATTCTACTTTCTTGCTCTGCATAA-AAATATATAATCTAGCTTTTCATATCACTTCTTTACT----GATAACAACAGGAAGAATGACAAGATATCTATTTTGGAAATTT----ACTCTGGTAGGAGTAAGGATGATACAGTGATAGAATTACATACAAAACT--------AGAGAAAAATATGGTCTTATGATAGCCTATCACAAGATATCCTATTGGCTTCAT-AAAGCTCAGATATTTTATCTAAAAAT---ATTTTCATCTTAGGAATGATCAAAGCATGAGACTAAAATTGTATTACA---------------------ATG
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4077521 432 +  55844845 -----------------------------------------------ATGAATAT----AGGTAATGTTTATATAGATAGAAGCGACCATTTTTCTGACACT-----------ATCCTTAAAATATACAATAATTATCTATGTAATTGACTGAAT----TTATTAGATAATATAGATTTTATTCTACCTTTTTGTCCCAAAT-ACAGATATACACTCT-GTTTTTCATTTCACTTACTCATTTACAAATAATGACAGGGAAAATGGCAAAATATAGATTTTGGAAAAACAAAGATTTTGGAAAAGTTAAGGAGGGAGCAATGATAGAATTATGGGCAAAACTATAAAATAAGTGAAGAATATGGCCAAACAATAGTCTATCACATCTCATCTTAAAAGTTTCAT-TAAGCTCAAATATTTTAACAAAAATTA-----TTTATTTGGGGAAAGACCAAATTATGAGAATAGAATCATATTATATCTTTCCCTCATTGATTAAATATG
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I

a score=-5661.000000
s hg38.chr14_KI270725v1_random      107411 8 +    172810 ----TGCTTGTA
s panTro4.chrUn_GL393527            251394 8 +    341619 ----TGCTTGTA
i panTro4.chrUn_GL393527         C 0 C 0
s nomLeu3.chr17                   44116974 4 -  99891981 -----ACTC---
i nomLeu3.chr17                  C 0 C 0
s macFas5.chr3                   124991499 4 - 192294377 -----ACTC---
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122256319 4 - 180432695 -----ACTC---
i papAnu2.chr3                   C 0 C 0
s calJac3.chr8                    20052068 4 + 128169293 -----ACTC---
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4077953 8 +  55844845 TGATGACT----
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e rheMac3.chr3                   124540281 4 - 198365852 I
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I
e chlSab2.chr21                  121512105 4 - 127223203 I
e ponAbe2.chrUn                    5678960 4 +  72422247 I

a score=805369.000000
s hg38.chr14_KI270725v1_random      107419 270 +    172810 TCACAAACATAGGTGC----TAAAAA-GGAGGGGAAAACATCACTACTGATATTTTCAATG-TATGTTTTACTTTTCATCAACATG--AACCTCAACTTG-ATATGATGCAG--------ATTGAAGGAAATCACCCATAATTCCATATGAAGAAGGCCTGTGATATTTTATGGGAAAATAAATAAAGAAAATGCTAACAGAAACCCTATTAAGCATGAAGCTTTATGGAGCAAAGACAAATCCAGTGGTGAAAGATACACACTCGAGTTCTGTTTGTTGTCTTGGA
s panTro4.chrUn_GL393527            251402 270 +    341619 TCACAAGCACAGGTGC----TAAAAA-GGAGGGGAAAACATCATTAATGATATTTTCAACG-TATGTTTTACTTTCCATCAACACG--AACCTCAACTTG-ATATGATGCAG--------ATTGAAGGAAATCACCCATAGTTCAATATGAAGAAGGCCTGTGATATTTTATGGGAAAATAAATAGAGAAAATGCTAACAGAAAACCTATTAAGCATGAAGCTTTATGGAGCAAACACAAATCCAGTGGTGAAAGATACACACTCGAGTTCTGTTTGTTGTCTTGGA
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5678964 272 +  72422247 TCACAAGCACATGTGCTAAATAAAAA-GGAGGGGAAAACATCATTACTGATATTTTAAACG-TATGTTTTACTTTCCATCAACATG--AACCTCAACTTG-ATATGATGCAG--------ATTGAAGGAAATCACCCATAATTCCATATTAAGAACGCCTGTGATATTTTATGGGAAAATAAATAGAGAAAATGCTAACAAAAACCCTATTAAGCATTAAGCTTTATGGAGCAAAGACAAATCCAGTGGTGAAAG--ACACACTCCAGTTCTGTTTGCTGTCTTGGA
i ponAbe2.chrUn                  I 4 C 0
s nomLeu3.chr17                   44116978 263 -  99891981 TCACAAGCACATGTGC----TAAAAA-AGAGGGGAAAACATCATTACTGATATTTTAAACG-TATGTTTTACTTTCCGTAAACATG--AACCTCAACTTG-ATATGATGCAG--------ATTGGAGGAAATCACCCATAATTCCATATTAAGGAAGCCTGTGATATTTTATGGGAAAATAAATAGAGAAAATACTAACAAAAACCCTATT-------AAGCTTTATGGAGCAAAGATAAATCCAGTGGTGAAAGATACACGCTCAAGTTCCGTTTGTTGTCTTGGA
i nomLeu3.chr17                  C 0 C 0
s rheMac3.chr3                   124540285 267 - 198365852 TCACAAGCACATGTGC----TAAAAA-GGAGGGAAAAACATCATTACTGATATTTAAAAAC-TATGTTTTACTTTCCATAAACATGC-AATTTCAACTTG-ATATGATGCAG--------ATTGAAGGAAATCACCCATAATTCCATATTAAGAAGGCCTGTGATATTTTATGGGA----AAATAGAGAAAATGCTAACAGAAACCCTATTAAGCATTAAGCTTTATGGAGCAAAGACAAATCCAGTGGTGAAAGATACACACTCGAGTTCTGTATGTTGTCTTGGA
i rheMac3.chr3                   I 4 M 455
s macFas5.chr3                   124991503 267 - 192294377 TCACAAGCACATGTGC----TGAAAA-GGAGGGAAAAACATCATTACTGATATTTAAAAAC-TATGTTTTACTTTCCATAAACATGC-AATTTCAACTTG-ATATGATGCAG--------ATTGAAGGAAATCACCCATAATTCCATATTAAGAAGGCCTGTGATATTTTATGGGA----AAATAGAGAAAATGCTAACAGAAACCCTATTAAGCATTAAGCTTTATGGAGCAAAGACAAATCCAGTGGTGAAAGATACACACTCGAGTTCTGTATATTGTCTTGGA
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122256323 267 - 180432695 TCACAAGCACATGTGc----taaaaa-ggagggaaaaacatcattactgatattttaaaac-tatgttttagTTTCCATAAACATGC-AATTTCAACTTG-ATATGATGCAG--------ATTGAAGGAAATCACCCATAATTCCATATTAAGAAGGCCTGTGACATTTTatggga----aaatagagaaaatgctAACAGAAACTCTATTAAGCATTAAGCTTTATGGAGCAAAGACAAATCCAGTGGTGAAAGATACACACTCAAGTTCTGTATATTGTCTTGGA
i papAnu2.chr3                   C 0 C 0
s chlSab2.chr21                  121512109 267 - 127223203 TCACAAGCACATGTGA----TAAAAA-GGAGGGAAAAACATCATTACTGATATTTAAAAAC-TATGTTTTACTTTCCATAAACATGC-AATTTCAACTTG-ATATGATGCAG--------ATTGAAGGAAATCACCCATAATTCCATATTAAGAAGGCCTGTGATATTTTATGGGA----AAATAGAGAAAATGCTAACAGAAACCCTGTTAAGCATTAAGCTTTATGGAGCAAAGACAAATCCAGTGGTGAAAGATACACACTCAAGTTCTGTATGTTGTCTTGGA
i chlSab2.chr21                  I 4 C 0
s calJac3.chr8                    20052072 266 + 128169293 TCACAAGCACACGTGC----TAAAAATAAAGGGAAAATCATAATTCCTTATATTTAAAATG-TATGTTTTACTTTCCATACGCATGC-AGTTTCAACTTTCATATGATGCAG--------ATTGAGGGAAATCACCCATAATTCCATATTAAGAAGGCCTGTGCTATTTTATGGGA----AAACAGAGAAAATGCTAACAGAAAACCTATTAAGCCTTAAGCTTTATGGAGCAAAGACAAATTCA--GGTGAAAGATAAACACTC-ATTTCTGTTTGTTGTCTTGGA
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4077961 241 +  55844845 --CTCCGTACACATAC----TAAAAGTGGGGGGAAATGTATCATCACTGAAATTAGGAAAGTTATATTTCACATTCTATAAGCATGTGGGTTTTAAATTG-ATATGGGGCAGGTGAAGAAATTGAAGAAAATTACCCATGATTCCACACTTAGAAAAACTGAAATA--TTATGGGAAATTAAATGGAAAAAA-------AAAAACACT----------AAGCTTAATGGCACAAAGACAAAT-------------------GCTC-AGTGCTGTTTGTTGTCTTGGA
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I

a score=66691.000000
s hg38.chr14_KI270725v1_random      107689 28 +    172810 ACAATACGGTTTAGAGGTGACTGGCGGG
s panTro4.chrUn_GL393527            251672 28 +    341619 ACAATACGGTTTACAGGTGACTGGCGGG
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5679236 28 +  72422247 ACAATACGGTTTAGAGGTGACTGGTGGG
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44117241 28 -  99891981 ACAATACGGTTTAGAGGTGACTGGTGGG
i nomLeu3.chr17                  C 0 C 0
s macFas5.chr3                   124991770 28 - 192294377 ACAACAGGGTTTAGAGATGACTGGTGGG
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122256590 28 - 180432695 ACAATAGGGTTTAGAGATGACTGGTGGG
i papAnu2.chr3                   C 0 C 0
s chlSab2.chr21                  121512376 28 - 127223203 ACAATAGGGTTTAGAGATGACTGGTGGG
i chlSab2.chr21                  C 0 C 0
s calJac3.chr8                    20052338 28 + 128169293 ACAATAGGGTTTAGAGGTGGCGAGTGAG
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4078202 23 +  55844845 GCAGTAGAGTTTAGAG-----TGTTAGG
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e rheMac3.chr3                   124540552 455 - 198365852 M
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I

a score=13863.000000
s hg38.chr14_KI270725v1_random      107717 14 +    172810 TGAGGAGAACATAT
s panTro4.chrUn_GL393527            251700 14 +    341619 TGAGGAGAACATAT
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5679264 14 +  72422247 TGAGGAGAACATAC
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44117269 14 -  99891981 TGAGGAGAACATAT
i nomLeu3.chr17                  C 0 C 0
s macFas5.chr3                   124991798 14 - 192294377 TCCAAGAATCatat
i macFas5.chr3                   C 0 C 0
s papAnu2.chr3                   122256618 14 - 180432695 TCCAAGAAtcatat
i papAnu2.chr3                   C 0 C 0
s calJac3.chr8                    20052366 14 + 128169293 TGAGGTGAATGTAT
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4078225 13 +  55844845 -TGATAAAACATGT
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e rheMac3.chr3                   124540552 455 - 198365852 M
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I
e chlSab2.chr21                  121512404  0 - 127223203 C

a score=4701.000000
s hg38.chr14_KI270725v1_random      107731 3 +    172810 GCG
s panTro4.chrUn_GL393527            251714 3 +    341619 GCG
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5679278 3 +  72422247 GCG
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44117283 3 -  99891981 GCG
i nomLeu3.chr17                  C 0 C 0
s papAnu2.chr3                   122256632 3 - 180432695 gtg
i papAnu2.chr3                   C 0 I 679
s calJac3.chr8                    20052380 3 + 128169293 GTG
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4078238 3 +  55844845 GTG
i canFam3.chr18                  C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e rheMac3.chr3                   124540552 455 - 198365852 M
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I
e chlSab2.chr21                  121512404 0 - 127223203 C
e macFas5.chr3                   124991812 0 - 192294377 C

a score=365901.000000
s hg38.chr14_KI270725v1_random      107734 406 +    172810 AGTTCACCAAAGAGAAAAGTTGAATGAGGCAATGCCTCTTCCTGACCATATCTCTTACTCAGATAACTATATAATTTATTGCCCAGTAAAGGGTATATTAAAAAATCATATTAAAAGTCATGCAGTGAAGTTGTCCAGGGAAATCAAGACTTAACAGTCTCACTCTG-ACAATAATGAACAGG------------GGAATTCCCT---------------------------CAAGATAGACTAGGACATGACTCCACACTGGCAGGTAGTAGTACCAGAAAAGAACCCATGGAAAATCTTTACCTTATGCTTGAGGTAGGGACCAGGCTAAAGTGAAAGCCAGACATAAAATTCTATCTAAAATAAATCCACAATCGAAGAAAATATGTGGTGTACAGGCATAAAATGTCTTTACTGGATCATTGAAATAGTAAGATAAATTCAA
s panTro4.chrUn_GL393527            251717 406 +    341619 AGTTCACCAAAGAGAAAAGCTGAATGAGGCAATGCCTCTTCCTGACCATATCTCTTACTCAGATAACTATATAATTTATTGTCCAGTAAAGGGTATATTTAAAAATCATATTAAAAGTCATGCAGTGAAGTTGTCCAGGGAAATCAAGACTTAACAGTCTCATTCTG-ACAATAATGAACAGG------------GGGGTTCCCT---------------------------CAAGATAGACTAGGATATGACCCCACACTGGCAGATAATAGTACCAGAAAAGAACCCATGGAAAATCTTTACCTAATGCTTGAGGTAGGGATCAGGCTAAAGTGAAAGCCAGACATAAAATTCTATCTAAAATAAAACCACAATCGAAGAAAATATGTGGTGTACAGGCATAGAATGTCTTTACTGGATCATTGAAATAGTAAGATAAATTCAA
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5679281 406 +  72422247 AGTTCACCAAACAGAAAAGCTGAATGAGGCAATGCCTCTTCCTGACCATATCTCTTACTCAGATAACTATATAATTTATTGTCCAGTAAAGGGTATATTTAAAATTCATATTAAAAGTCATGCAATGAAGTTGTCCAGGGAAATCAAGACTTAACAGTCTCACTCTG-ACAATAATGAATAGG------------GGGGTTCCCT---------------------------CAATATAGTCTAGGACATGACCCCACACTGGCAGGTAGTAGTACCAGAAAAGAACCCATGGAAAATCTTTACCTTATGCTTGAGGTAGGGACCAGGCTAAAGTGAAAGCCAGACATAAAATTCTATCTAAAATATATCCACAATCAAAGAAAATATGTGGTGTACAGGCATAGAATGTCTTTACTGGATCATTGAAATAGTAAGATAAATTCAA
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44117286 406 -  99891981 AGTTCACCAAACAGAAAAGCTGAATGAGGCAATGCCTCTTCCTGACCATATCTCTTACTCAGCTAACTATATAATTTATTGTCCAGTAAAGAGTATATTTAAAAATCACATTAAAAGTCATGCAATGAAGTTGTCCAGGGAAATCAAGACTTAGCAGTCTCACTCTG-ACAATAATGAACAGG------------GGGGTTCCCT---------------------------CAAGATAGACTAGGACATGACCCCACATCGGCAGGTAGTAGCACCAGAAAAGAACCCATGGAAAATCTTGACCTTATGCTTGAGGTAGGGACCAGGCCAAAGTGAAAGCCAGACATAAAATTCTATCTAAAATATATCAATAATCGAAGAAAATATGTGGTGTACAAGCATAGAATGTCTTTACTGGATCATTGGAATAGTAAGATAAATTCAA
i nomLeu3.chr17                  C 0 C 0
s calJac3.chr8                    20052383 409 + 128169293 AGTTCACCAGATAGAAAAGCTCTATGAGGCAATGCCTCTTGCTGGACATATCTCTTACTCAGGTAACCATATAATTTATTGTCCAGTAAAGGGTATATTTAAAAATCATATTAGAAGTCATGCAATGAAGTT------------------------GTCTCACTCTGCCCAATAATGAACAGG------------GGTGTTCCCTCATTCATTGGACTAGGTGTCCCTAGTCCAAGACAGATGAGGACATGACCCCACACTGGTAGGCAGTAGTACAAGAAAAGAACCCACCAGAAGTCTTTACTATATAGTTGAGGTAGAGACCAGACCAAAGTGAAAG-CAGATATGAAATTCTATCTAAACTATATTAACAATCGAAGAAAATATGTGGTTTACAGGTGTGGAATATCTCTAATAGATCAATGAAATAGTATGATAAATTCAG
i calJac3.chr8                   C 0 C 0
s canFam3.chr18                    4078241 392 +  55844845 -ACTCACTGGATAGAAAGTTGGTATGAGGTAA-GTTTCCTCCTGCCTGGATTTCTAGCTCAGATAGCCACAAAACTTATCATACAAAATGGAGCATACTTAAAAATTATTCTA---------CAGTGAAGCTATCCTAGGAAATGAAGATTTGG--ATTTCACTCTG-CCCATAATGAACAGTTTCTCCACCATCAGACTTCCCT---------------------------ACAGATGGGTCAGGATGTGCCCACAGACCTGCAGGCAGTGGT-TCAGAACATAACA---GGGAAAGCCACACTGCAGCTGTGAGGTAGAGACTGGGCCACA--------CAGAAACCAGATTCTACGTAAGACGTATCAACAATCAGAG-AAATTCATAGTGTAAAGGGAAAAAATGTCACTACTGGATCAATGGAACTGTAAGGTAAATCCAA
i canFam3.chr18                  C 0 I 2140
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e rheMac3.chr3                   124540552 455 - 198365852 M
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I
e chlSab2.chr21                  121512404   0 - 127223203 C
e papAnu2.chr3                   122256635 679 - 180432695 I
e macFas5.chr3                   124991812   0 - 192294377 C

a score=583166.000000
s hg38.chr14_KI270725v1_random      108140 783 +    172810 CTTTTTACATtgttttcttttcctccagttagggcttgaggtttgtctctggagagtgactgtcaattggagccctgcctttctggggttctggtcagggcattgtggatgcttaacatgtgcctttcacaggacacttccttaccccagcagtggccaggtgtgcaccccacgaccaggcctccctctcacagaacatctgttgagactaggagatgcctggtgactgttgcctgacctgtgtactgtgtatttctgaca--agagccactctcagagaccctggccaggaggagagttaggttccagtgtaggtcagctcagacacatggaggccacaggaccaaacatgggaaatcacagaagtggttttattactcacagatccagagagaagagggtagcTGAGAAGAGggtttagctgtgtccccagccaaatctcatcttgaactcccacatgttgtgggacggaacaggttggaggaaattgaatcatgggggcaggtctttcccatgctgttcttctgagagtgaataagtctcacaagatctgatggttttataaagaggagtttccctgcataagctctcttgtcttgtctgctgccatgtgagacgtgcctttcaccttctgccatgattgtgtggcctacccagacatgtggaactgtgcgtctattaaacctctttcttctggaaattacccagtcttgggcatgtctttaccggtggtgtgaaaatggactaatacaGTAGCACACCTCATAGGGCTGAACAAAAT-GGGA
s panTro4.chrUn_GL393527            252123 781 +    341619 CTTTTTACCTtgttttcttttcctccagttagggcttgaggtttgtctctggagagtgactgtcaattggagccctgcctttctggggttctggtcagggggttgtggatgcttaacatgtgcctttcacaggacacttccttaccccagcagtggccaggtgtgcattccacgaccaggcctccctctcacagaacatcagttgagactaggagatgcctggtgactgttgcctgacctgtgtcctgtgtatttctgaca--agagcccctctcagagaccctggccagtaggagagttaggttccagtgtaggtcagctcagacccatggaggccacagaaccaaacatgggaaatcacagaagtaggtttattactcactgat-tagagagaagagggtagcTGAGAAGAGggtttagctgtgtcctcagccaaatctcatcttgaattcccacatgttgtaggagggaacagatgggaggtaattgaatcatgggggcaggtctttcccatgctgttcttctgatagtgaataagtctcacaagatctgatggttttataaaggggagtttccctgcacaagctctc--gtcttgtctgctgccatgtgagacgtgcctttcaccttgcaccatgattgtgaggcctacccagccatgtgcaactgtgggtctattaaacgtctttctcctggaaattacccagtcttgggcatgtcttttccggcagtgtgaaaatggactaatacaGTAGCACAACTCATAGGGCTGAACAAAATGGGGA
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5679687 747 +  72422247 ATTTTTACATtgttttattttcctccagttagggcttgaggtttgtctctggatagtggctgtcagttggagccctgcctttctggggttctgggcagggggttgtggatgcttaatatgtgccattcacaggacacttcctta-cacagcagtggccaggtgtgcatcccacgaccaggcctccctctcacagaacatctgttgagactaggagaggcctggtggctgttgcctgacctgtgtcctgtgtatttctgaca--agagccactctcagagaccctggccaggagcagagttaggt---------------------------gtggccacaggaccaaacatgggaaatcacagaagtagttttattactcacagatccagagagtagagggtagcTGAGAAGAGggtttagctgtgcccccagccaaatctcatcttgaattcccacatgttgtgggagggaacaggtgggaggtaattgaatcatgggggcaggtctttcccatgctgttcttctgatggtgaataagtctcacaagatctgatggttttatacaggggagtttccctgcacaaactctc-----ttgtctgctgccatgtgagacgtgcctttcaccttccaccatgattgtgaggcctacccagccatgtggaact----gtctattaaacctctttcttctggaaattacccagtcttgggcatgtctttaccagcggtgtgaaaatggactaatgcaGTAGCACACCTCATAGGGCTGAACAAAATGGGGA
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44117692 773 -  99891981 ATTTTTACACtgttttattttccttcagttaggggttgaggtttgtctctggagagtggctgtcaattggagccctgcctttttggggttctgggcagggggttgtgcatgcttaacatgtgccttttacaggacacttcctta------aagtggccaggtatgtatcccacgaccaggcctccctctcacagaccatctgttgagactaggagatgcctggtggctgttgcctgacctgtgtccagtgtatttctgaca--agagccactgtcagagaccctggcaaggaggagagttaggttccagtgtaggtcagatcagacacatggaggccacaggaacaaacatgggaaatcacagaagtagttttattactcacagatccagagagaagagggtagcTGAGAAGAGggtttggctgtgtccccagccaaatctcatcttgaattcacacatgttgtgggagggaacaggtgggaggtaattgaatcctgggggcaggtctttcccatgctgttcttctgatagtgaataagtctcacaagatctgatggttttataaaggagggtttccttgcacaagctctc-----tcgtctgctgccacgtgagatgtgcctctcaccttccaccatgattgtgaggcctacccagccatgtgcaactgtacatctattaaacctctttcttctggaaattacacagtcttgggcatgtttttatcggcagtgtgaaaatggactaatacaGTAGCACACGTCATAGGGCTGAACAAAACAGGGA
i nomLeu3.chr17                  C 0 C 0
s calJac3.chr8                    20052792 767 + 128169293 ATTTTTACACtgttttattttcctctaattagggcttgaggtttgtgtctggagagtggctgtaaattcaagcccttcctttctggggttctgggcaggtggttgtggatgcttagcatatgcctttcacaggacacttcctcaccccggcagggtccatgtctgcatcccacaac---------------cagaatatccattgaaactagcaggtgcctggatgccattgtctgacctgtatccagtgtatttctgacaagagagccactctcagagaccctggccaggaggagagttaggttccagtgcaggtcatatcagacacatggaggccacaggaccaaacatgggaaatcacagaaacagttttattactcacagatccagagagaagagggtagttg---atatggtttggctgtgtccccagccaaatctcatcttgaattcccacatattttgggagggacagggtgggaagtaactgaatcatggaggcaagtctttcccatcctgttattgtgatattgaataagtctccgaagatctgatgcttttataaaggggaggttctctgcacaagctctcttctcttgtctgctgccaggtggaatgtgcctttcaccttccaccatgattgtgaggcctccccagccatgtggaa-tgtgagtctgttaaacctgtttcttctgtaaattcctcattcttgggcatgtctttatgggcagtgtgaaaacggactaatacagtaacatacctcatagggctgaacaaaatgagga
i calJac3.chr8                   C 0 C 0
e tupBel1.scaffold_70142.1-11303       840 3364 +     11303 I
e gorGor3.chr9                    48954961 7782 + 121947112 I
e canFam3.chr18                    4078633 2140 +  55844845 I
e rheMac3.chr3                   124540552 455 - 198365852 M
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I
e chlSab2.chr21                  121512404   0 - 127223203 C
e papAnu2.chr3                   122256635 679 - 180432695 I
e macFas5.chr3                   124991812   0 - 192294377 C

a score=1365.000000
s hg38.chr14_KI270725v1_random      108923 1 +    172810 A
s panTro4.chrUn_GL393527            252904 1 +    341619 A
i panTro4.chrUn_GL393527         C 0 C 0
s ponAbe2.chrUn                    5680434 1 +  72422247 A
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr17                   44118465 1 -  99891981 A
i nomLeu3.chr17                  C 0 C 0
s calJac3.chr8                    20053559 1 + 128169293 a
i calJac3.chr8                   C 0 C 0
s tupBel1.scaffold_70142.1-11303      4204 1 +     11303 a
i tupBel1.scaffold_70142.1-11303 I 3364 N 0
e gorGor3.chr9                    48954961 7782 + 121947112 I
e canFam3.chr18                    4078633 2140 +  55844845 I
e rheMac3.chr3                   124540552 455 - 198365852 M
e saiBol1.JH378145                17633427 32819 +  18371965 I
e tarSyr2.KE946558v1                 88970 2236 +   1121937 I
e chlSab2.chr21                  121512404 0 - 127223203 C
e papAnu2.chr3                   122256635 679 - 180432695 I
e macFas5.chr3                   124991812 0 - 192294377 C

a score=70779.000000
s hg38.chr14_KI270725v1_random    108924 97 +    172810 GAcgagtggggagcaagagagagaaaaggggtctgtgggactccagcctttattgggcccagaacattacccaaatatgttttcctcgaggctctag
s panTro4.chrUn_GL393527          252905 97 +    341619 GAcgagtggggagcaggagagagaaaaggggtctgtgggactccagcctttattgggcccagatcattacccatataagttttccacggggaattag
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5680435 97 +  72422247 GATgagtggggagccagagagagaaaaggggtctgtgggactccagccattactgggcccagaacaatacccaaataagttttccacggggatctag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44118466 97 -  99891981 GATAAgtagggagcaagagagagaaaagggatctgtgggactccagccttcattgggcccagaatattacccaaaaaagttttccatggggctctag
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20053560 97 + 128169293 gatgagtggggagcaagagagacagaaggggtctgtgggactccagtctttactggactcggaacattagccatacaagtttctcacagggctttag
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e canFam3.chr18                  4078633 2140 +  55844845 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               88970 2236 +   1121937 I
e chlSab2.chr21                121512404  0 - 127223203 C
e papAnu2.chr3                 122256635 679 - 180432695 I
e macFas5.chr3                 124991812  0 - 192294377 C

a score=-545.000000
s hg38.chr14_KI270725v1_random    109021 2 +    172810 tc-
s panTro4.chrUn_GL393527          253002 2 +    341619 tc-
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5680532 2 +  72422247 tc-
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44118563 2 -  99891981 tc-
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20053657 2 + 128169293 tt-
i calJac3.chr8                 C 0 C 0
s otoGar3.GL873564               1584094 2 -  14340318 -ca
i otoGar3.GL873564             N 0 N 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e canFam3.chr18                  4078633 2140 +  55844845 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               88970 2236 +   1121937 I
e chlSab2.chr21                121512404 0 - 127223203 C
e papAnu2.chr3                 122256635 679 - 180432695 I
e macFas5.chr3                 124991812 0 - 192294377 C

a score=351483.000000
s hg38.chr14_KI270725v1_random    109023 468 +    172810 agtggggtgagtgccagcaggcatatttctt-ggctcctgctgcaactgagcaggtcactctggcgtttgggagctgtccatgtgtgctgtgaggtctgtggagtgagtcaggtaggttgtatccaacggttccatagctggtagtcaccaggaggaggcaactgtgtagggtcaatacctgggcc-agccacactgaggaactg---tgagggttagaactgcaaattgtcaagggaatctgaacccagctaccataagagagagttcaacttatgttcaatgtgaatgccatggcaatattaaaaggtaagaattcg-------------------------------------------ctccaTACGTGCTTGAGGTAAATAGGAGAAACCTAGAATTTATGTAAACAGTGAGAAGATTGGATGTGTTTTCCGTCACATATTTTAATACTAGCAGCATATTATATATGTCAATCCATCAGGCATTCAGAAATACATGCTTATGAAAATTTTT
s panTro4.chrUn_GL393527          253004 467 +    341619 ggtggggtgagtgccagcaggcacatttctt-gactcctgctgcaaccgatcaggtcactgtggcgtgtgggggctgtccatgtgcgctgtgaggtctgtggggtgagtcaggtaggttgtatccaa-ggttccatagctggtagtcaccaggaggaggcaactgtgtagggtcaatatctgggca-agccacactgaggaactg---tgagggttagaagtggaaattgtcaagggaatctgaacccagctaccatatgagagagttcaacttatgttcattgtgaatgccatggcaatattaaaaggtaagaatttg-------------------------------------------ctccaTACGTGCTTGAGGTAAATAGGAGAAACCTAGAATTTATGTAAACAGTGAGAAGATTGGATGCATTTTCCATCGCATATTTTAATACTAGCAGCATATGATATATGTCAATCCATCAGGCATTCAGAAATATATGCTTATGAAAGTTTTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5680534 468 +  72422247 ggtggggtgagtgccagcaggcacatttctt-ggctcccgctgcaattgagcaggtcactctggcgtgtgggggctgtccatgtgggctgtgaggtctgtagggtgagtcaggtaggttgtatccaacggttccattgtgggtactcaccaggaggaggcaactgtgtagggtcagtatctgggcc-agccacactgaggaactg---tgagggttagaactggaaattgtcaagggaatctgaacccagctaccatatgagagagttcaacttatgttcaatgtgaatgccacggcaatattaaaaggtaagaatttg-------------------------------------------ctCTATACGTGCTTGAGGTAAATAGGAGAAACCTAGAATTTATGTAAACAGTGAGAAGATAGGATGCGTTTTCTGTCACATATTTTAATACTAGCAGCATATTATGTATGTCAATCCATCAGGCATTCAGAATTACATGCTTATGAAAATTTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44118565 469 -  99891981 agtggggtgagtgccagcaggcacatttctt-ggctcccgctgcaactgagcaggtcactctggcatgtgggggctgtccatgtggggtgtgaggtctgtggggtaagttaggtaggttgtatacaacgattccatagcgggtagtcaccaggaggaggcaactgtgtagggtcaatatctgggccgagctgcactgaggaactg---ggagggttacaactggaaattgccaggggaagctgaacccagctaccgcatgagagagttcaacttacattcagtgtgaatgccatgacaacattaaaatataagaattca-------------------------------------------ctccaTACGTGCTCGCGGTAAATAGGAGAAACCTAGAACTTATGTAAACAGTGAGAAGATTGGATGCATTTTCCGTCACCTATTTTAATACTAGCAGCATATTATATATGTCAATCCATCAGGCATTCAGAAATACATGCTTATGAAAATTTTT
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20053659 506 + 128169293 ggtgaggtgagtgccggcaggcacattccctggggtcccgctgtaactgagcaggtcagtctggcatgggtggactgtccgtgtgggttgtgaggtctgcagggtgagttaggtaggttataaccagtcattccatagcagctagtcaccaggaggaagcaactgttcagggtcggtatctgggcc-------actgaggaactgggaggagggttagaactggaaactgtcaagggaaactgaactcaactaccatataagagagttcaacttacattcaatgtgaatgccacggtaacataaaaatgtaagaattTGGCCCGCACTCCGGCTCAAAAAAAGAAAAAAAGTTAAGAATTCACTCCATATGTGCTCAAGGTAAATAGGAGAAACCTAGAATTTATGTAAATAGTGGGAAGATTTGATGCGTATTCAGTCACATGTTTTAATACTAGCAGCATGTTATATATGTCAATCTATCAGACCTTCAGAAATACATGCTTATGAAA---TTT
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e canFam3.chr18                  4078633 2140 +  55844845 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               88970 2236 +   1121937 I
e chlSab2.chr21                121512404   0 - 127223203 C
e papAnu2.chr3                 122256635 679 - 180432695 I
e macFas5.chr3                 124991812   0 - 192294377 C

a score=1365.000000
s hg38.chr14_KI270725v1_random    109491 1 +    172810 T
s panTro4.chrUn_GL393527          253471 1 +    341619 T
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5681002 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44119034 1 -  99891981 T
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20054165 1 + 128169293 T
i calJac3.chr8                 C 0 C 0
s tarSyr2.KE946558v1               91206 1 +   1121937 T
i tarSyr2.KE946558v1           I 2236 I 1125
e gorGor3.chr9                  48954961 7782 + 121947112 I
e canFam3.chr18                  4078633 2140 +  55844845 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e chlSab2.chr21                121512404 0 - 127223203 C
e papAnu2.chr3                 122256635 679 - 180432695 I
e macFas5.chr3                 124991812 0 - 192294377 C

a score=296096.000000
s hg38.chr14_KI270725v1_random    109492 365 +    172810 -CATCATCAGACAAAAGACAAGGGTAGAAGACATTTGTAACCCTATAAACTCTAGTAAATTAAAAACAGAAGGACCTTTATGTCCTAACATATCTGTGTTGTGAAAGGCTGCCCTGTGAAATACGGGATTTCTTAAACATATTTTAAAAATCATAGGTGTCAATATTTTTTAGAAATCCATTTAAATTTTCTCTTGCTGTTTTACAATGCCTATTTATTTATTTAGTGGCTCTGCTGATTTTGATGTATATCCTAAACTTTACATTTTCTTTAAAAGATGTTTTATACAACTTTACGTAAAATGTTTCAGTATCTTCACATTCTCTCCCTGTCCTTTTGTTTTGCTCTTATATGGTGGTCTTGAGT
s panTro4.chrUn_GL393527          253472 366 +    341619 GCACCATCAGACAAAAGACAAGGGTAGAAGACATTTGCAACCCTATAAACACTAGTAAATTAAAAACAGAAGGACCTTTATGTCCTAACATATCTGTGTTGTGAAAGGCTGCCCTGTGAAATACGGGACTTCTTAAACATATTTTAAAAATCATAGGTGTCaatactttttagaaatccatttaaattttctcttgctattttacaatgcctatttatttatttagtggctctgctgattgtgacgtttatcctaaactttacattttctttaaaggatgttttatacaactttacgtaaaatgtTTCAGTATCTTCACATTCTCTCCCTGTCCTTTTGTTTTGCTCTTATATGGTGGTCTTGAGT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5681003 366 +  72422247 GCACCATCAGACAAAAGACAAGGGTAGAAGACATTTTTAACCCTATAAACACTAGTAAATTAAAAACACAAGGGCCTTTATGTCCTAATATATCTATGTTGTGAAAGGCTGCCCTGTGAAATACGGGATTTCTTAAACATATTTTAAAAATCATAGGTGTCaatattttttagaaatccatttaaattttctcttgctattttacaatgcctatttatttatttagtggttctgctgattttgatgtatatcctaaactttacattttctttaaagtatgttttatacaactttatgtaaaatgtTACAGTATCTTCACATTCTCTCCCTGTCCTTTTGTTTTGCTCTTATATGGTGGCCTTGAGT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44119035 366 -  99891981 GCACCATCAGACAAGAGACAAGGATAGAAGACATTTTTAACCCTATACACACTAATAAATTAAAAACAGAAGGACCTTTATGTCCTATAATATCTATGTTGTGAAAGGCTGCTCTGTGAAATATGGGATTTCTTAAACATATTTTAAAAATCATAGGTGTCaatattttttagaaatccatttaaatttcctcttgctattttacagtgcctatttatttatttagtggttctgctgatttcgacgtatatcctaaaatttacattttctttaaagtatgttttatacaactttatgtaaaatgtTTCAGTGTCTTCACATTCTCTCCCCGTTCTTTTCTTTTGCTCTTATGTAGTGGCCTTGAGT
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20054166 361 + 128169293 GCACCACAAGAAAAGAGACA-----AGAAGACATTTTTAACCATAGAAACACTAGTAAATTAAAAACAGAAGGACATTAATGTCCTAATGTATTTATGTTGTGGGAGGCTGCCCTATGAAATACAGGATTTTTTAAACATATATTAAAAATCATAGGTGTCGATATtttttagaaatccatttaaattttctattgctattttacaatgcctatttatttatttagtggttctgctgattttgacatatatcctaaacttcacattttctttaaagtaagttttatacaacttcatgtaaaatgtTTAAATATCTTCACATTCTCTCCCTGTCCTTTTGTTTTGCTCTCATAGGGTAGCCTTGAGT
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e canFam3.chr18                  4078633 2140 +  55844845 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               91207 1125 +   1121937 I
e chlSab2.chr21                121512404   0 - 127223203 C
e papAnu2.chr3                 122256635 679 - 180432695 I
e macFas5.chr3                 124991812   0 - 192294377 C

a score=356112.000000
s hg38.chr14_KI270725v1_random    109857 392 +    172810 CTTTTCTCTGGCTTTTCAAACCTAGTAAGACTAAGACACTAAAGTAAC-TTTGCCCGTGGTTTGGTAATATTTTCTAAAG---CACATCCTAAGCTCTCATGCATACAGGGGTCTCCTTTGAG-CT-CTGTGCTTTTG--AGATCCCATATACCTAAATTCCAGTATTGCAAATCAGTACTGCTCAGTTTCAGTTACTAA-GTTTAAAAATGTATTTTAATAGCAAGTTAGTTTAGTGCACTCTTGCTTCTTTCTTGACTGCTTGTATACATGTATATTCCTTTAAATGAATCTTGGAATTTATTTAAAAATT-TTAAATTATACTAATGAAACTGTAT-----ATTGTTGTGAATTCATAAG-TGAATTTGGAAAGAATTTGTCTTTATGATACTAAATCCTTTTTA---------
s panTro4.chrUn_GL393527          253838 392 +    341619 CTTTTCTCTGGCTTTTCAAACCTAGTTAGACTAAGACACTAAAGTAAC-TTTGCCCGTGGTTTGGCAATGCCTTCTAAAG---CACATCCTAAGCTCTTGTGCATACAGGGGTATCCTTTGAG-CT-CTGTGCTTTTG--AGATCCCATATACCTAAATTCCAGTACTCCAAATCAGTACTGCTCAGTTTTAGTTACTAA-GTTTAAAAATGTATTTTAATGGCAAGTTAGTTTAGTGCACGCTTGCTTCTTTCTTGACTGCTTGTATACATGTATATTCCTTTAAATGAACCTTGGaatttatttaaaaatt-ttaaattataCTAATGAAACTGTAT-----ATTGTTGTGAATTCATAAG-TGAATTTGGAAAGAATTTGTCTTTATGATAGTAAATCCTTTTTA---------
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5681369 392 +  72422247 CTTTTCTCTGGCTTTTCAAACCTAGTAAGACTAAGACACTAAAGTAAC-TTTGCCCGTGGTTTGGTAATGCCTTCTAAAG---CACATCCTAAGCTCTCATGCATACAGGGGTCTCCTTTGAG-CT-CTATGCTTTTG--AGATCCCATATACCTAAATTCCAGTACTCCAAATCAGTACTGCTCAGTTTTAGTTACTAA-GTTTAAAAATGTATTTTAATAGCAAGTTAGTTTAGTGCACTCTTGCTTCTTTCTTTACCGCTGATATACATGCATATTCCTTTAAATGAATCTTGGaatttatttaaaaatt-ttaaattataCTAATGAAACTGTAT-----ATTGTTGTGAATTCATAGG-TGAATTTGGAAAGAATTTGTCTTTATGATACTAAATCCTTTTTA---------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44119401 361 -  99891981 CTTTTCTCTGGCTTTTCAAACCTAGTAAAACTAAGACACTAAAGTAAC-TTTTCCTGTGGTTTGGTAATGCCTTCTAAAG---CACATCCTAAGCTCTCGTGCATGCAGGGGTCTCCTTTGAG-CT-TTATTCTATTG--AGATCCCATATACCTAAATTCCAGTAATCCAAATCAGTACTGCTCAGTGTTAGTTATTAA-GTTTAAAAATTTATTTGAATAGCAAGTTAGTTTAGTGAACTCTTGCTTCTTTCTTTACTGCTGGTATACATGTATATTCCTTTAA-------------------------------------ACCAATGAAACTGTATCTGGCATTGTTGTGAATTGATAGA-TGAATTTGGAAAGAATTTGGCTTTATGATAATAAATCCTTTTTA---------
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20054527 397 + 128169293 CTTTTCTCTGGCTTTTCAAACCTAGTAAGACTAAGACACTAAAGTAACTTTTGACAGTGGTTTGGCAATGACTTCTAAAG---CACATCCTAAGCTCTCATGCATAGAAGGGTCTATTTTAAGCCT-TTATTCTATTG--GGATCCCATATACCTAAATTCCAGTACTCCAAATCAGGACTGGAAAGCTTTAGTTACTAA-GTTTACAAATTTATTTTAACAGCAAGTTAGTTTGGTGTACTCTTGCTTCTTTATTTACTGCTGGAATACATGTTTATTCCTTTAAATGAATCTTGGGAGt--tttaaaaatt-ttaaattatactaatgaaattgtatctggcattgttgtgaattgatagg-tgaatttggaaagaatttgtccttatgataccaaatccttttta---------
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4080773 405 +  55844845 CTCTCCTCTGATTCCTCAAGCC-AGTAAGACCATAAGAAAGACCTAACTTTTGTCCCTTGTTTGGCAATGTTATCTAAAAAGTTATGTCCTAAACTCACATGTACACAGAGGTCCATTTTTAG-CTATTATTCGATTGCAGGATCCAATATACTTA---TCC------TTAAATCAATGCTTCATAGCTTCAGTTACTAATGCCTAATAATTTATTTTAATAGTTATTGAGTTTGATGTATCCTTTAATTTCTCTTTATTGCTAATATACATATTTATTTTTTGAAATGAATCTTGGGGTT-ATTTAAAATTTGCTGAGCTATACTGATGAAATTGTCTTCTGGCTTGCAATAAATTGATAAGATGAATTTGGGAAGAATTTGTCCTTATGATACTAGATCtttttttttttttttt
i canFam3.chr18                I 2140 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               91207 1125 +   1121937 I
e chlSab2.chr21                121512404   0 - 127223203 C
e papAnu2.chr3                 122256635 679 - 180432695 I
e macFas5.chr3                 124991812   0 - 192294377 C

a score=6873.000000
s hg38.chr14_KI270725v1_random    110249 12 +    172810 TCCAAGAATC--AT
s panTro4.chrUn_GL393527          254230 14 +    341619 TCCAAGAATTAGAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5681761 14 +  72422247 TCCAAGAATCatat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44119762 14 -  99891981 TCCAAGAATCATAT
i nomLeu3.chr17                C 0 C 0
s chlSab2.chr21                121512404 12 - 127223203 TCCAAGAATCat--
i chlSab2.chr21                C 0 I 2
s calJac3.chr8                  20054924 14 + 128169293 accaagaataatat
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4081178 11 +  55844845 tttaatCATCT---
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               91207 1125 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I
e macFas5.chr3                 124991812  0 - 192294377 C

a score=190784.000000
s hg38.chr14_KI270725v1_random    110261 117 +    172810 GTGTCTTTATATTTATTCCTGTCTATATTTATGTCACTGAGtaaatatatagaaatgtagatacatacagctgtagttatag----atac----aaatatagatataacatgttaaatcta----tatc
s panTro4.chrUn_GL393527          254244 121 +    341619 GTGTCTTTATATTTATTCCAGTCtatatttatatcactgagtaaatatatagaaatgtggatacatacagctgtagttatag----atac----aaatatagatataacatgttaaatctatatctatc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5681775 119 +  72422247 gtgcctttatatttattc--gtctatatttatatcactgagtaaatatatagaaatgtagatacatacagctgtagttatag----atag----aaatgtagatataacatattaaatctatatctatc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44119776 119 -  99891981 GTGCC------TTTATTCTAGTCtatatttatatcactgagtaaatatatagaaatgtagatacatatagctatagttatag----atagatataaatatagatataacatgttaaatctatatctatc
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124991812 119 - 192294377 gtgtctttatatttattccagtctatatttacataactgagtaaacatatagaaatgtagatacatatagatatag--atag----atac----aaatatagatataacatgttaaatctgtgtctatc
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121512418 115 - 127223203 gtgtctttatatttattccagtctatatttacataactgagtaaacatatagaaatgtagatacatatagat------atag----atac----aaatatagatataacatgttaaatctgtatctatc
i chlSab2.chr21                I 2 C 0
s calJac3.chr8                  20054938 121 + 128169293 gtgcctttacatttattccaatctatctttaTATAACTGAGTAAATATATAGAAATGTAGATACATATGGATATAGTTATAGAGATATAC----AAATATCGATATAACATGTTAAAACTA----TATC
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4081189  96 +  55844845 GTGCCTTTCTATTGATTTAGGTCTATTCTGATATGCCTGAGTAG----ATAGAAATATTGATAA--------------ACAG----ATAA----AGATGAAGCTATAATAAGTTAAAA-------TATT
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               91207 1125 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=2173.000000
s hg38.chr14_KI270725v1_random    110378 5 +    172810 ccgta
s panTro4.chrUn_GL393527          254365 5 +    341619 ccata
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5681894 5 +  72422247 ccata
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44119895 5 -  99891981 ccata
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124991931 5 - 192294377 ccatg
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121512533 5 - 127223203 ccatg
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20055059 5 + 128169293 CCATA
i calJac3.chr8                 C 0 C 0
s tarSyr2.KE946558v1               92332 2 +   1121937 tc---
i tarSyr2.KE946558v1           I 1125 I 2216
s canFam3.chr18                  4081285 1 +  55844845 -C---
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=293323.000000
s hg38.chr14_KI270725v1_random    110383 184 +    172810 taacatatatacatgttatatgtgtgtgtg------tata-------tatatatatgtttatGT-TATTAAAGAG------CTCCCTTAAAATTTTTATTT-TATTTCCTATATAATTTTAGGTCGAGCTTGAATTTTCCTTGT--------------ATAAACAAGCAAATATTTATACTAGTTTTAATACTGATGTTTA---GACATTGCATCTTATTTT
s panTro4.chrUn_GL393527          254370 182 +    341619 taacatatatacatgttatacgtgtgtgtg--------ta-------tatatatatgtttatgt-TATTAAAGAG------CTCCCTTAAAATTTTTCTTT-TATTTCGTATATAATTTTAGGTCGAGCTTGAATTTTCCTTGT--------------ATAAACAAGCAAATATTTATCCTAGTTTTAATACTGATGCTTA---AACATTGTATCTTATTTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5681899 180 +  72422247 taacatatatacattttatatgtgtgtg----------ta-------tatatatatgtTTGTGT-TATTAAAGAG------CTCCCTTAAAATTTTTCTTT-TATTTCCTATATAATTTTAGGTTGAGTTTGAATTTTCCTTGT--------------ATAAACAAGCAAATATTTATACTAGTTTTAATACTGAGGTTTA---GACATTCTATCTTATTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44119900 191 -  99891981 taacatatatatatgttatatgtgtgtata------tatatatatattatatatatGTTTGTGT-TAATAAAGAG------CTCCCCTAAAATTTTTCTTT-TATTTCCTATATAATTTTAGGTTGATCTTGAATTTTCCTTGT--------------ATAAACATGCAAATATTTATACTAGTTTTAATATTGATGTTTA---GAAATTCTATCTTATTTT
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124991936 188 - 192294377 taacatatatacatgttatatatgtgtgta--tgtgtgtg-------tatatatatgtttgtat-tatTAAAGAG------CTCCCTTAAAATTTTTCTTT-TGTTTCCTATATATTTTTAGGTTGAGCTTGAATTTTCCTTGT--------------ATAAACATGCAAATATTTATACTAGTTTTAATACTGATGTTTA---GATGTTCTATTTTATTTT
i macFas5.chr3                 C 0 I 23
s chlSab2.chr21                121512538 190 - 127223203 taacatatatacatgttatatatgtgtatatgtgtgtgtg-------tatatatatGTTTGTGT-TATTAAAGAG------CTCCCTTAAAATTTTTCTTT-TGTTTCCTATATATTTTTAGGTTGAGCTTGAATTTTCCTTGT--------------ATAAACATGCAAATATTTATACTAGTTTTAATACTGATGTTTA---GATGTTCTATTTTATTTT
i chlSab2.chr21                C 0 I 47
s calJac3.chr8                  20055064 183 + 128169293 TAAAatatatgcatgttacatgtgtgtatg--tgtgtata-------tatatatgtgtgtgtgtGTATTAAAGAG------CTCCCTTAAAATTCTT-------TTTCTTATGTGTTTTTAGGTTGAGCTTGAATTTTCGTTGT--------------ATAAAAATGCAAATGTTTATACCAGTTTTAATACTGATGTTTA---GACCTTCTATTTTATTTT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4081286 171 +  55844845 -----------------------------------------------TCTTTCTCTCTTTCTAT-CTTTAAGGGGAAATAACTACCTC--AATTTTTGTTCGCATTTCCTATAAATATTTAGGTTAAGTTTGAATTTTCCTATTTTAGAATTATAATGATATAAACCCAAATATTTATACCAGCTTTAATACCAATGATTGTATGACTGTATTTTTTATTT-
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=11450.000000
s hg38.chr14_KI270725v1_random    110567 9 +    172810 AGCATTGAA
s panTro4.chrUn_GL393527          254552 9 +    341619 AGTATTGAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682079 9 +  72422247 AGCATTGAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120091 9 -  99891981 AGCATTGAA
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124992147 9 - 192294377 AATATTAAT
i macFas5.chr3                 I 23 I 15
s calJac3.chr8                  20055247 9 + 128169293 AGCATTGAC
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4081457 9 +  55844845 ACCATTGaa
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e chlSab2.chr21                121512728 47 - 127223203 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=300937.000000
s hg38.chr14_KI270725v1_random    110576 200 +    172810 TATTTTCACAATTAT---AAATATT---ATCTAATATTAATAATGTACCTGTTAAAAATATTTAAAATTTTACCT-----------TTGAATTATTTTATTGTTGAATTAAAATTCCTTTAA-TATGATAGTAAATTTCTATTTTATGCTTTCTCTATGCATATGCAAATTA------ATCTATCCACTTCT----CTATCTCTATGTAGTAACATATGAAAATCAGA
s panTro4.chrUn_GL393527          254561 201 +    341619 TATTTTCACaattatta-aaatatt---atctaatattaataatGTACCTGTT-AAAATATTTAAAATTTTACCT-----------TTGAATTATTTTATTGTTGAATTAAAATTCCTTTAA-TATGATAGTAAATTTCTATTTTATGCTTTCTCTATGCATATGCGAATTA------ATCTATCCACTTCT----CTATCTCTATGTAGTAACATATGAAAATCAGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682088 197 +  72422247 TATTTTCACaattattataaatatt---atctaatattaataatGGAACTGttaaaaatatttaaaattttaCCT-----------TTGAATTATTTTATTGTTGAATTTAAATTCCTTTAAGTATGATAGTAAATTTCTATTTTATGCTTTCTCCATGC-------AATTA------ATCTATCCACTTCT----CTATCCCTATGTAGTAACATATGAAAATTAGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120100 201 -  99891981 TATATTCACAATTATTATAAATATT---ATCTAA---TAATAATGTAACTGTTAAAAATATGTAAAATTTTACCA-----------TTGAATTATTTTATTGTCGAATTTAAATTCCTTTAAGTATGATAGTAAATTTGTATTTTATGCTTTCTCTATGCATATGCAAATTA------ATCTACCTACTTCT----CTATCTCTATGTAGTAACATATGGAAATCAGG
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124992171 200 - 192294377 TATTTTCACAATTATTATA---ATT---ATCTAATATTAATAATGTAACTGTA-AAAATATTTAAAATTTTACCA-----------TTGAATTATTTTATTGTTGAATTTAAATTCTTTTACATATGATAGTAAATTTGTATTTTATGCTTTCTCTATGCATATGCAAATTA------ATCTATCCACTTCT----CTATCTCTATGTAGTAACATATGAAAATGAGA
i macFas5.chr3                 I 15 C 0
s chlSab2.chr21                121512775 200 - 127223203 TATTTTCACAATTATTATA---AAT---ATTTAATATTAATAATATAACTGTA-AAAATATTTAAAATTTTACCA-----------TTGAATTATTTTATTGTTGAATTTAAATTCTTTTACATATGATAGTAAATTTATATTTTATGCTTTATCTATGCATATGCAAATTA------ATCTATCCACTTCT----CTATCTCTATGTAGTAACATATGAAAATGAGA
i chlSab2.chr21                I 47 C 0
s calJac3.chr8                  20055256 217 + 128169293 -TTTTTCATAATTATTATAAATGTTACGATCTAATATTAATGATGCAACtatt-aaaatatttaaaattttaCCATTATTTAATCGTTGAATTATTTAATTCTTGAATTTAAATTCCTTTAAGT---ATAATAAATTTGAATTTTATACTGACTCTGTGCATATGAAAATTA------ATCTATTCACTTCTTGAACAATCTCTATGTAGTAACATATGAATATGAGA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4081466 127 +  55844845 --------------------------------------------------------------------------------------------tattt--ttatttattttaatttCCTTTATATATGATAATAAACT---ATGTGATGTTTTCTCTGTGCATATGCAAGCTAATATCTATATATGCATTTCT----CTATCTCTGGTTAGTAAAATATGAAAATAAGA
i canFam3.chr18                C 0 I 137
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=115567.000000
s hg38.chr14_KI270725v1_random    110776 63 +    172810 CCTCTCTTCTTCTAATGGACATACAC-----------------ATGTTTGCCTATAGAATATCAGACTCTTTATAGCATT
s panTro4.chrUn_GL393527          254762 63 +    341619 CCTCTCTTCTTCTAATGGACATACAC-----------------ATGTTTGCATATAGAATGTCAGACTCTTTATAGCATT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682285 63 +  72422247 CCTCTCTTCTTCTAATGGACATACAC-----------------ATGTTTGCATATAGAATATCAGACTCTTTATAGCATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120301 63 -  99891981 CCTCTCTTCTCCTAATAGACATACAC-----------------ATGTTTGCATATAGAATATCAGACTCTTTATAGCATT
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124992371 61 - 192294377 CCTCTTTTCTTCTAATAGACATACAC-------------------GTTTGTTTATAGAATATTGGACTCTTTATAGCATT
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121512975 61 - 127223203 CCTCTTTTCTTCTAATAGACATACAC-------------------ATTTGCTTATAGAACATTGGACTCTTTATAGCATT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20055473 63 + 128169293 GCTCTCTTCTTCTAATAGGCATATAT-----------------ATGTTTGCATATGGAATATCAAACTCGTTATGGCATT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4081730 80 +  55844845 TCTCTCTCCCTCTCTTAGACATATATTTCTTAGACATAAATGTGTATATATGTATAAAATATCAGACTCTTTATAGCTTT
i canFam3.chr18                I 137 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e rheMac3.chr3                 124540552 455 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=190144.000000
s hg38.chr14_KI270725v1_random    110839 70 +    172810 TAAAATCTTTAAAGACATGAATATTGCCTTTTAACAAATATA-TTTTAGCATGTACTGAGAATCCCCTATT
s panTro4.chrUn_GL393527          254825 70 +    341619 TAAAACCTTTAAAGACATGAATATTGCCTTTTAACAAATATA-TTTCAGCATGTACTGAGAATCCCCTATT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682348 70 +  72422247 TAAAATCTTTAAAGACATGAATATTACCTTTCAACAAATATA-TTTTAGCATGTACTGAGAATCCCCTATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120364 70 -  99891981 TAAAATCTTTAAAGACatgaatattaccttttaacaaatata-ttttagcatgtactgagaatcccctatt
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124541007 70 - 198365852 Taaaatctttaaatacatgaatattaccttttaacaaatata-ttttagcatgtactgagaatctcctatt
i rheMac3.chr3                 M 455 C 0
s macFas5.chr3                 124992432 70 - 192294377 TAAAATCTTTAAATACATGAATATTACCTTTTAACAAATATA-TTTTAGCATGTACTGAGAATCTCCTATT
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121513036 70 - 127223203 TAAAATCTTTAAATACACGAATATTACCTTTTAACAAATATA-TTTTAGCATGTACTGAGAATCTCCTATT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20055536 70 + 128169293 TAAAATCATTAAAGACATGAATATAACCCTTTAACAAAAATG-CTTTAGCATGTACTTAGAATCCTCTAtt
i calJac3.chr8                 C 0 I 306
s canFam3.chr18                  4081810 70 +  55844845 TATTACCCTTAAAGACATGAATATAACA-TGCAATAAATATACTTTCAGCATATATTGAGAATCTCCTATT
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=215777.000000
s hg38.chr14_KI270725v1_random    110909  96 +    172810 TATTTTTAATTTGGGCTAATCAATATGATTATTAATATTATTGGATTACCAAATTTGGAAGCA-------------------CACTTTCATCCCCAAGGTGGATATTTGTTTTAT
s panTro4.chrUn_GL393527          254895  95 +    341619 TATTTTTAATTTGGGCTGATCAATATGATTATTAATATTATTGAATTACCAAATTTGGAAACA-------------------CACTTTCATCCCCAAGGTAGATATTTGTTTTA-
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682418  96 +  72422247 TATTTTTTATTTGGGCTAATCAATACGATTATTAATATTATTGGATTACCAAATTTAGAATCA-------------------CACTTTCATCCCCAAGGTGGATATTTGTTTTAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120434  89 -  99891981 tattttttatttgggctaatcaatatgattattaatattattggattaccaaatttggaatca-------------------cactttcatccccaaggtggatattt-------
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124541077  96 - 198365852 tattttttatttggtctaatcaatatgattattaatattattggattaccaaatttggaatca-------------------cactttcatccccaaggtggatatttgctttat
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124992502  96 - 192294377 TATTTTTTATTTGGTCTAATCAATATGATTATTAATATTATTGGATTACCAAATTTGGAATCA-------------------CACTTTCATCCCCAAGGTGGATATTTGCTTTAT
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121513106  96 - 127223203 TATTTTTTATTTGGTCTAatgaatatgattattaatatgattggattaCCAAATTTGGAATCA-------------------CACTTTCATCCCCAAGGTGGATATTTGTTTTAT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20055912 113 + 128169293 TATTTTTTATTTTGTATAATCAATACGATTGTTAATTTTATTGGATTTCAAAATTTGGATGAAAAATTTGGAAATTTTTATCCACTTTCATCCCCAAGGTGGATATTTAATTT--
i calJac3.chr8                 I 306 C 0
s canFam3.chr18                  4081880  83 +  55844845 ----TTTTATCTATTCTAATTAATAAGGTTATTTATATCATTTG--------ATTCAGAATTA-------------------CATTTGAAT-TCAAAGGTGAAAATTTGCTTAAT
i canFam3.chr18                C 0 C 0
e gorGor3.chr9                  48954961 7782 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=-1309.000000
s hg38.chr14_KI270725v1_random    111005 1 +    172810 -T
s gorGor3.chr9                  48962743 1 + 121947112 -t
i gorGor3.chr9                 I 7782 I 3861
s ponAbe2.chrUn                  5682514 1 +  72422247 -T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120523 1 -  99891981 -t
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124541173 1 - 198365852 -t
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124992598 1 - 192294377 -T
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121513202 1 - 127223203 -T
i chlSab2.chr21                C 0 C 0
s canFam3.chr18                  4081963 1 +  55844845 A-
i canFam3.chr18                C 0 C 0
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e calJac3.chr8                  20056025 0 + 128169293 C
e papAnu2.chr3                 122256635 679 - 180432695 I
e panTro4.chrUn_GL393527          254990 0 +    341619 C

a score=495337.000000
s hg38.chr14_KI270725v1_random    111006 238 +    172810 TTTTTTTTGCCAATTTCTTGTGTTACTGTTTCAAATATTGTTGAAAATTA-TTTTTATTTTATTTGGCAT-----TTTAGTATCAACATTTGCAATTGAGGT---ACTCT--ACATATTTTTTCTTCAATATCTGGTGGGTTTTATATTTACTGTTATATTGG-ATTTGTAGTAGACATTGACAAAA----ATTATTGCTGTATGTTTTATAGCTGTAtgaaggaaactaatatattttacc----cctaaatatatt
s panTro4.chrUn_GL393527          254990 237 +    341619 -TTTTTTTGCCAATTTCTTCCCTTACTGTTTCAAATACTGTTGGATATTA-TTTTTATTTTATTTGGCAT-----TTTAGTATCAACATTTGTAATTGATGT---ACTCT--ACATATTTTTTCTTCAATATCTGGTGGGTTTTATAATTACTGCTATATTGG-ATTTGTAGTAGACATTGACAGAA----ATTATTCCTGTATGTTTTATAGCTGTAtgaaggaaactaatatattttaac----cctaaatatgtt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682515 189 +  72422247 ---TTTTTGTCAATTTCTTGTCTTACTGTTTCAAATATTGTTGGATATTA-TTTTTATTTTATTTGGCAT-----TTTAGTGTCAATATTTGTAAGTGATGA---ACTCT--ACTTATTTTTTCTTCAGTATCTGGTGGGTTTTATAATTACTGCT-TATTGGAATTTGAGGTGAAAATTGACAAAA----ATTATTCCCG---GTTTTGT-----------------------------------------------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120524 238 -  99891981 atttttttgctaatttcttgtcttactgtttcaaatattgttggagatta-tttttattttatttggcat-----tttagtatcaatgtttgtaagtgatgt---actct--acatattatttcttcaatctctggtgggttttataattactgctatattgg-atttgtaGTAGACATTGACACAA----ATTATTTCTTTATGTTTCATAGCTGTAtgaaggaaaccaatatattttacc----ccaaaatatatt
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124541174 235 - 198365852 ---gttttg-cagtttcttgtcttactgtttcaaatattgtcagagattatttttttttttatttggcat-----tttagtatcaatatttgtaagtgagat---actct--acatattttttcttcaatatctggtggattttataattactgctatattgg-ATCTGTAGTAGATATTGACAAAA----ATTATTTCTTTATGTTTTATAGCTGTAtgaaggaaatcaacatattttacc----ccaaaatatgtt
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124992599 234 - 192294377 ---GTTTTG-CAGTTTCTTGTCTTACTGTTTCAAATATTGTCGGAGATTA-TTTTTATTTTATTTGGCAT-----TTTAGTATCAATATTTGTAAGTGAGAT---ACTCT--ACATATTTTTTCTTCAATATCTGGTGGATTTTATAATTACTGCTATATTGG-ATCTGTAGTAGATATTGACAAAA----ATTATTTCTTTATGTTTTATAGCTGTAtgaaggaaatcaacatattttacc----ccaaaatatgtt
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121513203 230 - 127223203 ---GTTTTG-CAGTTTCTTGTCTTACTGTTTCAAATACTGTTGGAGATTA-TTTTTATTTTATTTGGCAT-----TTTAATATCAATATTT----GTGAGAT---ACTCT--ACATATTTTTTCTTCAATATCTGGTGGGTTTTGTAATTACTGCTGTATTGG-ATCTGTAGTAGATATTGACAAAA----ATTATTTCTCTATGTTTTATAGCTGTAtgaaggaaaccaatatattttacc----ccaaaatatatt
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20056025 237 + 128169293 ---TTTTTGCTAATTTCTTGTATTACTGCTTCAAATATTGTTGGAAATTA-TTTTTATTTTATTTGGCATTTTAGTTTAGTATCAATATTTGTAAGTGATGT---ACTCT--ACATATTTTTTCTTCAATATCTGCTGGGTTTTA---TTACTGCTATACTGG-ATTTGTAGAAGATATTAACAAAA----ATTATATGTCTATGTTTTATAGCTGTAtgaagaaaaccaatatatttcacc----ccaaaaaatatt
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4081964 236 +  55844845 ---------TTGCTTTTTTGTATGGATGTTTCAAATACTGTTGTAGATTA-C-----TTTTGTTTGGCAT-----TTTTGTATAAATATTTATAAGTCATATTGCACTCTACACATATATTTTTTATAATATCCGTTACATTTTATAATTACTGCAATATTGG-ATTTATAGAAGGAATTAGCAAAAAAATATTATTTCTCTATGTTCTCTAAGCATACAACCAAAAAT-ATATACATTACCTGATTCTTAATATCTT
i canFam3.chr18                C 0 I 1320
e gorGor3.chr9                  48962744 3861 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=28337.000000
s hg38.chr14_KI270725v1_random    111244 34 +    172810 tccttgatatatttc------------------------------aaaatggctattgagaag-g
s panTro4.chrUn_GL393527          255227 34 +    341619 tccttgatatatttc------------------------------aaaacgtcttttcagaag-g
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682704 38 +  72422247 -----------TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAA----------------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120762 34 -  99891981 tccttgatatatttc------------------------------aaaatggctattcagaag-g
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124541409 32 - 198365852 tccttgatatatttc-------------------------------agatggctattcagagg--
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124992833 32 - 192294377 tccttgatatatttc-------------------------------aaatggctattcagagg--
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                121513433 33 - 127223203 tccttgatatatttc-------------------------------aaatggctattcagaagg-
i chlSab2.chr21                C 0 I 18
s calJac3.chr8                  20056262 34 + 128169293 tccttgacatatttc------------------------------aaaatggctattcagaag-g
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=21138.000000
s hg38.chr14_KI270725v1_random    111278 14 +    172810 gctggaaatgcaaa
s panTro4.chrUn_GL393527          255261 14 +    341619 gctggaaatgcaaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682742  5 +  72422247 ---------GCAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120796 14 -  99891981 gctggaaatgcaaa
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124541441 14 - 198365852 gctggaaatgcaaa
i rheMac3.chr3                 C 0 I 337
s macFas5.chr3                 124992865 14 - 192294377 gctggaaatgcaaa
i macFas5.chr3                 C 0 C 0
s calJac3.chr8                  20056296 14 + 128169293 gctggaaatgcaaa
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e chlSab2.chr21                121513466 18 - 127223203 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=670.000000
s hg38.chr14_KI270725v1_random    111292 4 +    172810 ctta
s panTro4.chrUn_GL393527          255275 4 +    341619 ctta
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682747 4 +  72422247 CACA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120810 4 -  99891981 aata
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124992879 1 - 192294377 ---a
i macFas5.chr3                 C 0 I 3
s calJac3.chr8                  20056310 4 + 128169293 aata
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e rheMac3.chr3                 124541455 337 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e chlSab2.chr21                121513466 18 - 127223203 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=10311.000000
s hg38.chr14_KI270725v1_random    111296 5 +    172810 gctgc
s panTro4.chrUn_GL393527          255279 5 +    341619 gctgc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682751 5 +  72422247 Gctgc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120814 5 -  99891981 gctgc
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124992883 5 - 192294377 gctgc
i macFas5.chr3                 I 3 C 0
s chlSab2.chr21                121513484 5 - 127223203 gctgc
i chlSab2.chr21                I 18 C 0
s calJac3.chr8                  20056314 5 + 128169293 gctgc
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e rheMac3.chr3                 124541455 337 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=15325.000000
s hg38.chr14_KI270725v1_random    111301 7 +    172810 aaagctg
s panTro4.chrUn_GL393527          255284 7 +    341619 aaagctg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682756 7 +  72422247 aaagctg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120819 7 -  99891981 aaagctg
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124541792 7 - 198365852 aaagcta
i rheMac3.chr3                 I 337 C 0
s macFas5.chr3                 124992888 7 - 192294377 aaagctg
i macFas5.chr3                 C 0 I 328
s chlSab2.chr21                121513489 7 - 127223203 aaagctg
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20056319 7 + 128169293 aaaactc
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=555026.000000
s hg38.chr14_KI270725v1_random    111308 286 +    172810 tcttggggagatttgcactgttagagaatctgccttgatgcagccaggctttctctgagttctgcccccttgtctggatctaggaaaggttaactgagagtctgaggtctccaaaggtctgaaagaaaca------ttttctgtctatttctctctgaggactgctcccagtgaggttccacctatgtaataagtccactgttgctagtcagggtcgttttctcacataacc---ttttttTTTttt-----tccctgtgatccaagaccccattctttctgtaaacttcatgtggtaga
s panTro4.chrUn_GL393527          255291 289 +    341619 tcttggggagatttgcataggtagagaatttgccttgatgcagccaggctttctctgaagtctgcccccttgtctggatctaggaaaggttaactgagagtctgaggtctccaaaggtctgaaagaaaca------ttttctgtcta-ttctctctgaggactgctcccagtgaggttctatctatgtaataagtccactgttgctagccagggtcattttctcacataaca---tttttttttttt-tttgtccctgtgatccaagaacccattctttctgtaaacttcatgtggtaga
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5682763 290 +  72422247 tcttggggagatttgcatcagtagagaatctgccttgatgcagccaggctttctctgaggtctgcccccttgtctggatctaggaaaggttaactgagagtctgaggtctccaaaggtctgaaagaaaca------ttttctgtcta-ttctctctgaggactgctcccagtgaggtttcaccgacgtaataagtccactgttggtagctagggtccttttctcacataact---ttttttttttttttttttccctgtgatccaagaccccattctttctgtaaacttcatgtggtaga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44120826 269 -  99891981 tcttggggagatttgtatcagtagagaatctgctttgatgcagccaggctttctctgaggtctgcccccttggctggatctaggaaaggttaactgagagtctgaggtctccgaaggtctgaaagaaaca------ttttctgtcta-ttctctcggagggctgctcccagtgaggttt-----------------cactgttgctagccagggtctttttctcacataact---tttttttttttt----ccccctgtgatccaagcccctattctttctgtaaactcgatgtggtcaa
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124541799 295 - 198365852 tctcagggagatttgcatctatagagaatctgccttgatgcagccaggttttctctgaggtctgcccccttgtctggatctaggaaaagttaactgagagtctgagacctccataggtctgagagaaacattttctttttctatctg-ttctctccgagggccactcccagtgaagtttcacctatgtaacaagaccactgttactagccaaggtccttttctctcataatcttttttttttttttt----ttttttgtgatccaagtccccattctttctgtaaactcagtatggtaga
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124993223 292 - 192294377 tctcagggagatttgcatctatagagaatctgccttgatgcagccaggttttctctgaggtctgcccccttgtctggatctaggaaaagttaactgagagtctgagacctccataggtctgagagaaacattttctttttctatctg-ttctctccgagggccactcccagtgaagtttcacctatgtaacaagaccactgttactagccaaggtccttttctctcataatc---tttttttttttt----ttttctgtgatccaagtccccattctttctgtaaactcagtatggtaga
i macFas5.chr3                 I 328 C 0
s chlSab2.chr21                121513496 280 - 127223203 tctcagggagatttccatctgtagagaatctgccttgatgcagccaggttttctctgaggtctgcccccttgtctggatctaggaaaagttaactgagagtctgagacctccaaaggtctgagataaaca------ttttgtatctg-ttctctctgagggccacttccagtgaagtttcacctatgtaacaagaccactgttgctagccagggtccttttgtctcataatc---------tttttt----ttttctgtgatccaagtccccaatctttctataaactcaatgtggtaga
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20056326 257 + 128169293 tcttggggagatttgtacctgtagagaatctggtttgatgcacccaggctttctctgaggtctgtccccttgtctggatctaggaaaggtaaactgagagtctgaagcctctaaaggtctgaaagaaaca------gtttctgtttc------------------tcccagtgagatttcatctacgtaacaagaccactgttgctagtcagggtccttttct------acc---------tttttt----ttcccggtgatctaagtccccattctttctgtaacttcagcgtggtaga
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I
e papAnu2.chr3                 122256635 679 - 180432695 I

a score=2517436.000000
s hg38.chr14_KI270725v1_random    111594 852 +    172810 taagcttctgcacgcatcgtgtg-------tctgggtcttcgttctaagggctccagtgtacacacattgcagaaacctgtatgccttttctactatttatctgcctcctattag-tgattttcagggaaacttcagaaggcaaaagggacattctcc-tttagcccATTCTCAGAC-AAAATCCCCCAACATTTAACTGATTCCTAATAGCTTAAAATCACTTTGAAAAATCCGTATATTTATAACCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTCATTCCATTTACTTCATCCTCGAAAAGATCTATTTTACGTCTATTTATTCTCATTTATGGACCTtgagaaaagaaaataactttcatatgagaaatgcaagtcctttgaaataatcaggcccagagagatattcaaatgagac-agcagttctgtcctgctcctctttgagctgtgtgttcatctaggctgc-cgctgttaccacagtagctataaattaaccaataaagccacaccagacactataatccacacccaataatagtgtaacagtgtatagccaatcactaataaatgttatttccataagccaatgagaatttgtgacaaacctctttgcatcatcccacttctggacccttttttgcctttaagaaactgcttgttgcaaagctccaaagggagttcatatccaaggatacttgggtctgtttcttccaggcag-ctgtcctcattgtggatcaagtaaactctttgaattacgttttgtgcttcaGCCCCTTCCACTTAGATTAACAACATGATTTTGTGTCACCATGTACAGCAATTAAAATGTTTACACTTTTCCTCTC
s panTro4.chrUn_GL393527          255580 854 +    341619 taagcttctgcacgcatcgtgtg-------tctgggtcttcgttctaagggctccagtgtacacacattgaagaaacctgtatgctttttctactatttatctgcctcctattag-tgattttcagggaaacttcagaaggaaaaagggacattctccttttagcccatacTCAGAC-AAAATCCCCCAACATTTAACTGATTCCTAATAGCTTAAAATCACTTTGAAAAATCCATATATTTATAACGTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTCATTCCATTTACTTCATCCTCGAAAAGATCTATTTTATGTCTATTTATTCTCATTTATGGACATtgagaaaagaaaataactttcatgtgagaaatgcaagtccttttaaataatcagtcccagagagatattcaaatgagac-agcagttctgtcctgctcctctttgagctgtgtgttcatctaggctgcttgctgttgcctcagtagctataaattaaccaataacgccacaccagacactataatccacacccaataatagtgtaacagtgtatagccagtcactaataaatgttatttccataagccaatgagaatttgtgacaaacttctttgcatcatcctacttctggaaccttttttgcctttaagaaactgcttgttgcaaagctccaaagggagttcatatccaaggatacttgggtctgtttcttccaggcag-ctgtcctcattgtggctcaagtaaactctttgaattacgttttgtgcttcaGCCCCTTCCACTTAGATTAACAATATGGATTTGTGTCACCGTTTACAGCAATTAAAATGTTTACACTTTTCCCCTC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5683053 853 +  72422247 taagcttctgtacccatcgtgtc-------tctgggtctccattctaagggctccagtgtacacacattgcagaaacctgtatgccttttctactatttatctgcctcctattag-tgattttcagggaaacttcagaaggcaaaagggacattctcc-tttagcccatacTCAGAC-AAAATCCCCCAACATTTAACTGATTCCTAATAGCTTAAAATCACTTTGAAAAATCCATATATTTATAACCTTTTCTTTCCTCTGTGATTCCTGGTCAGCTTGGGTTTTGTTTTTTATTCCATTTACTTCATCCTTGAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACATtgagaaaagaaaataactttcatatgagaaatgcaagtccttttaaataatcaggcccagagagatattcaaatgagac-agcagttctgtcttgctcctctttgagctgtgtgttcatctaggctgcttgctgttccaacagtagctataaattaaccaataatgccacaccagacactataatccacacccaataatagtgtaacagtgtatagccagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacctgtttgcatcatcccacttcttgtcccttttttgcctttaagaaactgcttgttgcaaagctccaaatggagttcatatccaaggatacttgggtcggtttcttccaggcag-ctgtcctcattttggctcaagtaaactctttgaattacgttttgtgcttcaGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACAGCAATTAAAATGTTTATGCTTTTCCCCTC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44121095 849 -  99891981 taagcttcggcacccatcatgtg-------tctgggtcttcattctaagggctccagtgtacacacattgcagaaagctgtatacatttt---ctatttatctgcctcctgttag-tgattttcagggaatcttcagaaggcaaaagggacattctcc-cttagcctatacCCAGAC-AAAATCCCCCAACATTTAACTGATTCCTGATAGGTTAACATCACTTTGAAAAATCTATATAATTATAACCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTTACTCCATTTACTTCATCCTCGAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACACtgagaaaagaaagtaacttttatgtgagaaatgcaagtccttttaaacaatcaggcccagagagatattaaaatgagacaagcagttgtgccctactcctctttgagctgtgtgttcatccaggctgcttgctgttgccatagtagctataaattaaccaacaatgccacaccagacactataatcctcacccaataacagcttaacagtgtatagccagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacctctttgtatcatcccac--cttgtcccttttttgcctttaagaaactgcttgttgcaaagctccaaatggagttcatatccaaggatacttgggtctgtttcttccaggcag-ctgtcctcattttggctcaagtaaactctttgaattatgttttgtgcttcaGCCTCTTCCACTTGGATTAACAACAGGGATTTGCATCACCATGTACAGCAATTAAAATGTTTACACTTTTCCCCTT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124542094 860 - 198365852 taagcttctgcacccaccgtgtggctgggtcctgggtcttcattctaagggctccagtgtacacacattacagcaatctgtaagccttttctactatttatctgcctcctgttag-tgattttcagggaatcttcagaaggcaaaagggacattctcc-cttagcccatacCCAGGC-AAAATCCCCCAACATTTAACTGATTCCTGGTAGCTTAACATCACTTTGAAAGATCTATATATTTACAACCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTTACTGCATTTACTTCATCCTCAAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACATtgagaaaataaaataacttttatgtgagaaatactagtccttttaaataatcaggcccagagagatattaaaatgagac-agcagtcgtgcccaactcctctttgagctgtgtattcatctaggctgcttgctgttgccacagtagctataaattaatcaataatgccacaccagacaccataatccacacccaataacagcataacagtgtatagccagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacctctttgcatcatcccactccttgtcccttttcagcctttaagaaactgcttgttgcaaaactccaaatggagttcatatccaagaatacttgggtctgtttcttccaggcaa-ctgtccttattttggctcaggtaaactctttgaattacgttttgtgcttcaGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACCGCAATTAAAATGTTTACACTTTTCCCCTC
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124993515 860 - 192294377 taagcttctgcacccaccgtgtggctgggtcctgggtcttcattctaagggctccagtgtacacacattacagcaatctgtaagccttttctactatttatctgcctcctgttag-tgattttcagggaatcttcagaaggcaaaagggacattctcc-cttagcccatacCCAGGC-AAAATCCCCCAACATTTAACTGATTCCTGGTAGCTTAACATCACTTTGAAAGATCTATATATTTATAACTTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTTACTGCATTTACTTCATCCTCAAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACATtgagaaaataaaataacttctatgtgagaaatgctagtccttttaaataatcaggcccagagagatactaaaatgagac-agcagtcgtgcccaactcctctttgagctgtgtattcatctaggctgcttgctgttgccacagtagctataaattaatcaataatgccacaccagacaccataatccacacccaacaacagcataacagtgtatagccagtcactaatcaatgttatttccatgagccaatgagaatttgtgacaaacctctttgcatcatcccactccttgtcccttttcagcctttaagaaactgcttgttgcaaaactccaaatggagttcatatccaagaatacttgggtctgtttcttccaggcaa-ctgtccttattttggctcaggtaaactcttcgaattacgttttgtgcttcaGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACCGCAATTAAAATGTTTACACTTTTCCCCTC
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122257314 860 - 180432695 tAAGCTTCTGCACCCACCGTGTGGCTGGGTCCTGGGTCTTCATTCTAAGGGCTCCAGTGTACACACATTACAGCAATCTGTAAGCCTTTTCTACTATTTATCTGCCTCCTGTTAG-TGATTTTCAGGGAATCTTCAGAAGGCAAAAGGGACATTCTCC-CTTAGCCCATACCCAGGC-AAAATCCCCCAACATTTAACTGATTCCTGGTAGCTTATAATCACTTTGAAAGATCTATATATTTATAACCTTTTCTTCCCTCTATGATTTCTGGTCagcttgggttttgttttttactgcaTTTACTTCATCCTCAAAAAGATCTGTTTTATGTCTATTTATTCTCATTTATTgacattgagaaaataaaataacttttatgtgAGAAATGCTAGTCCTTTTAAATAATCAGGCCCAGAGAGATATTAAAATGAGAC-AGCAGTCGTGCCCAACTCCTCTTTGAGCTGTGTATTCATCTAGGCTGCTTGCTGTTGCCACAGTAGCTATAAATTAATCAATAATGCCACACCAGACACCATAATCCACACCCAATAATAGCATAACAGTGTATAGCCAGtcactaatcaatgttatttccATAAGCCAATGAGAATTTGTGACAAACCTCTTTGCATCATCCCACTCCTTGTCCCTTTTTAGCCTTTAAGAAACTGCTTGTTGCAAAACTCCAAATGGAGTTCATATCCAAGAATACTTGGGTCTGTTTCTTCCAGGCAA-CTGTCCTTATTTTGGCTCAAGTAAACTCTTTGAATTACGTTTTGTGCTTCAGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACCGCAATTAAAATGTTTACACTTTTCCCCTC
i papAnu2.chr3                 I 679 C 0
s chlSab2.chr21                121513776 860 - 127223203 taagcttctgtacccaccgtgtgactgggtcctgggtcttcattctatgggctccagggtacacacattacagaagcctgtatgccttttctactatttatctgcctcctgttat-tgattttcagggaatcttcagaaggcaaaagggacattctcc-cttagcccatacCCAGGC-AAAATCCCCCAACATTTAACTGATTCCTGGTAGCTTAACATCACTTTGAAAGATCTATATATTTATAACCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTTACTGCATTTACTTCATCCTCAAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACATtgagaaaataaaatatcttttatgtgagaaatgcaagtccttttaaataatcaggcccagagagatattaaaatgagac-agcagtcgtgcctgactcctctttgagctgtgtattcatctaggctgcttgaggttgccacagtagctataaattaatcaataatgccaagccagacaccataatccacacccaataatagcataacagtgtatagccagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacctctttgcatcatcccactccttgtccctttttagcctttaagaaattgcttgttgcaaaacgccaaatggagttcatatccaagaatacttgggtctgtttcttccaggcag-ctgtccttattttggctcaagtaaactctttgaattacgttttgtgcttcaGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTTACCATGTACAGCAATTAAAATGTTTACACTTTTCCCCTC
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20056583 856 + 128169293 ttagcttctgtatccatcatgtg-------gttgggtcttcattctgagggcccccacatacacacattacagaaacctgtatgctttttctgctattcatctgcctcctttcagatgattttcagggaaacttcagaaggcaaaatgaacattctcc-cttaacccatacCCAGGCAAAAATCCCCGAACATTTAACTGATTCCTGATAGCTTAATATCATTTTGGAAAATCTATATATTTACAGCCTTTTCTTTCTTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTATTACTCCATTTACCTCATCCTTGAAAAGATCTATTTTTTGTCCCTTTATTTTCATTTATTGACACtgagaaaagaaaataacctttatgtgagaaatgcaagtcctttcaaataatcaggcccagagtgatattaaaatgagac-agaagtcaggtcccactcctctttgagctgtgtattcatccaggctgcttgctgttgccacagtagctataaattaactaataatgccacaccagacactataatccacaccctataatagcttaacagtgtatagtcagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacatctttgcatcaccccactccttgtctcctttttgcctttaagaacctgctttcagtaaagctgcaaatggagttcatatccaaggatacttgggtctgtttcttacaagcagcctgtcctcattttggctcaagtaaactctttgaattatgttttgtgcttaagcctcttccacttagaccaacaACATGGATTTTTGGCACTATGCACAGCAATTAAAATGTTTACAATTTTTCCCTC
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               92334 2216 +   1121937 I

a score=-1604.000000
s hg38.chr14_KI270725v1_random    112446 2 +    172810 --CA
s panTro4.chrUn_GL393527          256434 2 +    341619 --GA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5683906 2 +  72422247 --GA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44121944 2 -  99891981 --GA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124542954 2 - 198365852 --AA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124994375 2 - 192294377 --AA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122258174 2 - 180432695 --AA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121514636 2 - 127223203 --AA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20057439 2 + 128169293 --AA
i calJac3.chr8                 C 0 C 0
s tarSyr2.KE946558v1               94550 2 +   1121937 CT--
i tarSyr2.KE946558v1           I 2216 I 25302
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I

a score=265373.000000
s hg38.chr14_KI270725v1_random    112448 92 +    172810 GGGCACTGATGTGTTTTCCTGAGCACTTGGAATAGCTACATAGTGTTTACTGTCTAGATTATggtttctcaaccttggtgctacttaccttt
s panTro4.chrUn_GL393527          256436 86 +    341619 GGGCATTGATGTGTTTTCCTGAGCACTTGGAATAGCTACGTAGTGTTTACTGTCTAGATTATggtttctcaaccttggtgctactt------
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5683908 92 +  72422247 GGGCATTGATGTGTTTTCCTGAGCACTTGGAATAGCTACATAGTGTTTACTTTCTAGATTATggtttctaaaccttggtgctacttaccttt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44121946 92 -  99891981 GGGCATTGATGTGTTTTCCTGAGCACTTGGAATAGCTACATGGTGTTTACTTCCTAGATTATggtttctcaaccttggtactatttaccttt
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124542956 92 - 198365852 GGGCATTGATGTGTTTTCCTGAGCACTTCGAGTAGCTACATTGTGTTTACTTTCTAGAATATggtttctcaaccttggtgctatttaccttt
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124994377 92 - 192294377 GGGCATTGATGTGTTTTCCTGAGCACTTCGAGTAGCTACATTGTGTTTACTTTCTAGAATATggtttctcaaccttggtgctatttaccttt
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122258176 92 - 180432695 GGGCATTGATGTGTTTTCCTGAGCACTTCGAGTAGCTACATTGTGTTTACTTTCTAGAATatggtttctcaaccttggtgcTATTTACCTTT
i papAnu2.chr3                 C 0 I 559
s chlSab2.chr21                121514638 92 - 127223203 GGGCATTGATGTGTTTTCCTGAGCACTTCGAGTAGCTACATTGTGTTTACTTTCTAGAATATggtttctcaaccttggtgctatttaccttt
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20057441 92 + 128169293 GGGCATCGATGTGTTTTCCTGAGCACTTTGAATGCCTACAGGGTTTTTATTTTCTAGATTATggtttttcaaccttggagctatttaccttt
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=1161366.000000
s hg38.chr14_KI270725v1_random    112540 419 +    172810 aggaccagaggattctttgttgtgggaggctgccctaacaatgctaggtgtttcgtttgacctctaaatttcacacctccaccagtcttgacatccccacaataac-cctagacattgacaaatgtctcct-ggggaaaactctccaccagttgacagccaAAGTTCTGGAAATATTGGAATTGTCAATTGAGATTTTATGTTATCCAAAACaaatatttttctttgtttttaaacatctacttccatctacttatctacttatttttacttttatttgtaacttaattccatcaaggagagagagtgcattttctgttatgctaaatttttgaagaatgtattgattttttctgacctgatatatggatgatatgtagatattacatgtTTGTATTATCAAATTTCAGGGCGATAAT-----AAA
s panTro4.chrUn_GL393527          256522 416 +    341619 ---accagaggattctttgttgtgggaggctgccctagcaatgctaggtgtttcgtttgacctctaaatttcacacctccaccagtcttgacatccccacaataac-cctagacattgacaaatgtctcct-ggggaaaactctccaccagttgacagccaAAGTTCTTGAAATATTGGAATTGTCAATTGAGATTTTATGTTATCCAAAACaaatatttttctttgtttttaaacatctatttccatctacttatctacttatttttacttttatttgtaacttaattccatcaaggagagacagtgaattttctgttatgctaaatttttgaagaatgtattgattttttatgacctgatatatggatgatgtgtagatattacatgtTTGTATTATCAAATTTCAGGGCGATAAT-----AAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5684000 419 +  72422247 aggaccagaggattctttgttgtgggaggctgccctagcaatgctaggtgttttgtttgacctctaaatttcactactccaccagtcttgacatccccacaataac-cctagacattgacaaatgtcttct-ggggaaaactctccaccagtagacagccaACGTTCTTGAAATATTGGAATTGTCAATTGAATTTTTATGTTATCCAAAACaaatatttttctttgtttttaaacatctacttccatctacttatctacttattttcacttttatttgtaacttaattccatcaaggagagagagtgcattttctgttatactaaatttttgaagaatgtattgattttttatgacctgatatatgggtgatatgtagatattacatgtTTGTATTATCAAATTTCAGGGCGataat-----aaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44122038 397 -  99891981 aggaccagaagattctttgttgtgggaggctgccctagcaatgctagaagtttcatttgacctctaaatttcacacccccaccagtcttgacatccccacaataac-cccagacattgccaaatgtctcct-ggggaaaaatctccaccagttgacagccaAAGTTCTTGAAATATTGGAATTGTCAGTTGAGTTTTTATGTTATTCACAACAAATATTTTTCTTTGTTTTTAAACATCTACTTCCATCTACTTATCTACTTATT----------------------TTCCATCAAGGATAGAGAGTGCATTTTCTGTTATGCTGAATTTTTCAAGAATGTATTGATTTTTTATAATCTGTTGTATGGATGATATGTAGATATTACCTGTTTGTATTACCAAATTTCAGGGCAATAAT-----AAA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124543048 414 - 198365852 agaaccagaggattatttgttgtgggaggctgccctagcaatgctagatgtttcatttgacctccaaatttcacacgcccaccagtcttgacattcccacagtaac-tctagacattgccaaatgtctcct-ggggaaaaatttccaccagttgagCGCCCAAGTTCTTGAAATATTGGAATTGTCAATTGAGTTTTTATGTTATCAAAAACAAATATTTTTCTTTGTTTTAAAACTTCTACTTCCATCTACTTATCTACTTATTTTTACTTTTATTTGTAACTTAATTCCATCAAGGAT----AGTGCATTTTCTATTATGCTAATTTTTTCAAGAATGTTTTGA-TTTTTATGACCTAATATATGGATGATATGTAGGTATTACATGTTTGTATTATCAAATTTCAGGGCAATAAT-----AAA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124994469 414 - 192294377 agaaccagaggattatttgttgtgggaggctgccctagcaatgctagatgtttcatttgacctccaaatttcacacgcccaccagtcttgacattcccacagtaac-tctagacattgccaaatgtctcct-ggggaaaaatttccaccagttgagagccCAAGTTCTTGAAATATTGGAATTGTCAATTGAGTTTTTATGTTATCAAAAACAAATATTTTTCTTTGTTTTAAAACTTCTACTTCCATCTACTTATCTACTTATTTTTACTTTTATTTGTAACTTAATTCCATCAAGGAT----AGTGCATTTTCTATTATGCTAATTTTTTCAAGAATGTTTTGA-TTTTTATGACCTAATATATGGATGATATGTAGGTATTACATGTTTGTATTATCAAATTTCAGGGCAATAAT-----AAA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122258827 414 - 180432695 agaaccagaggaTTATTTGTTGTGGGAGGCTGCCCTAGCAATGCTAGATGTTTCATTTGACCTCCAAATTTCACACGCCCACCAGTCTTGACATTCCCACAGTaac-tctagacattgccaaatgtctcct-agGGAAAAATTTCCACCAGTTGAGAGCCCAAGTTCTTGAAATATTGGAATTGTCAATTGAGTTTTTATGAtatcaaaaacaaatatttttctttgttttaaaacttctacttccatctacttatctacttatttttacttttatttgtaacTTGATTCCATCAAGGAT----AGTGCATTTTCTATTATGCTAAATTTTTCAAGAATGTTTCGA-TTTTTATGACCTAATATATGGATGATACGTAGATATTACATGTTTGTATTATCAAATTTCAgggcaataat-----aaa
i papAnu2.chr3                 I 559 C 0
s chlSab2.chr21                121514730 415 - 127223203 aggaccacaggattatttgttgtgggaggctgccctagcaatgctagatgtttcatttgacctccaaatttcacatgctcaccagtcttgacatccccacaataacttctagacattgccaaatgtctcct-ggggaaaaatttccaccagttgagagccCAAGTTCTTGAAATATTGGAATTGTCAATTAAGTTTTTATGTTATCAAAAACAAATATTTTTCTTTGTTTTAAAACTCCTACTTCCATCTACTTATCTACTTATTTTTACTTCTATTTGTAACTTGATTCCATCAAGGAT----AGTGCATTTTCTATTATGCTAAATTTTTCAAGAATGTTTTGA-TTTTTATGACCTAATATATGGATGATACGTAGACATTACATATTTGTATTATCAAATTTCAGGGCAATAAT-----AAA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20057533 423 + 128169293 aggaccagaggattcttcgtggtgggaagttgccctgacaatgttagaagtttcgtttgacccctaaatttcacacccccaccattctcgacatccccaccataac-tctagacattgccaaatgtcacctgggggaagaatctccaccagttgagagccaAAGTGCTTGAAATATTGGAATTATCAATTGAGTATTTATGTTATCCAAAACAAATATTTTTCTTTATTTT-AAACATCTACTTCAATCTACTTCTGTACTTATTTTTACTTTTATTTGTAACTTCATTGCATCAAGGATAGAAAGTGCATTTTCTGTCATGCTAAATTTTTCAAGAATGTATTGT-TTTTTATGAGCTAATATATGGGTAATATGTATATATTACATGTGTGTATTGTCAAATTTCAGGGCAATAATAAAACAAA
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4082200 1320 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=415525.000000
s hg38.chr14_KI270725v1_random    112959 131 +    172810 ATAAATACTTATAATATTTATATTGTCACTGTATATTAGTTATTTTCTTTCTTC--ACTACAGGAGTTTTTCAACCTGTAGGC--TATTTTTCAATTCTAGGTTATCCAGTCGATTTTGAAATGTTATGATCAAA
s panTro4.chrUn_GL393527          256938 131 +    341619 ATAAATACTTGTAATATTTATATTGTCACTGTATATTAGTTATTTTCTTTCTTC--ACTACAGGAGTTTTTCAACCTACAGGC--TGTTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTGTGATTAAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5684419 131 +  72422247 ataaatacttataatatttatattGTCACTCTATATTAGTTATCTTCTTTCTTC--ACTACAGGAGTTTTTCAACCTATAGGC--TATTTTTCAATTCTAGGTTATCCAGTAGATTTTGACATGTTATGATTAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44122435 128 -  99891981 ATAAATACTT---CTATTTATATTGTCACTATATATTAGTTATTTTCTTTTTTC--ACTACAGGAGTTTTTCAACCTATAGGC--TATTTTTCAATTCTAGGTTATCCAGCAGATTTTGAAACGTTATGATTAAA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124543462 131 - 198365852 ATAAATACTTCTACTATTTATATTGTCACTGTATATTAGTTATTTTCTTTTTTC--ACTACAGGAGTTTTTCAACCTAGAGGC--AATTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA
i rheMac3.chr3                 C 0 M 324
s macFas5.chr3                 124994883 131 - 192294377 ATAAATACTTCTACTATTTATATTGTCACTGTATATTAGTTATTTTCTTTTTTC--ACTACAGGAGTTTTTCAACCTAGAGGC--AATTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122259241 131 - 180432695 ataaatacttctacTATTTATATTGTCACTGTAtattagttattttcttttttc--actacaGGAGTTTTTCAACCTAGAGGC--AATTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121515145 131 - 127223203 ATAAATACTTCTACTATTTATATTGTCACTGTATATTAGTTATTTTCTTTTTTC--ACTACAGGAGTTTTTCAACCTAGAGGC--AATTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20057956 119 + 128169293 ATAAATACTTCTAATATTTATATTGTCACTACATATTAGTTATTTTCTTTTTTT--GCTACAGGAAATTTTCGGCCTATAGGC--TATTTTTCAATACTAGG------------TTTTGAAATGTTATGATTAAA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4083520 131 +  55844845 ATAAATA-TTCTAATATTTACACG---ATTATATATTTAACATTTTCTTTTTTCTTACTATAGCGATTTTCTAACCCACAGCCTTTTTTTTTCAATTATAGGTTAACATGTAGGTTATTAAATATTATGAGTAAT
i canFam3.chr18                I 1320 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=8852.000000
s hg38.chr14_KI270725v1_random    113090 3 +    172810 TAT
s panTro4.chrUn_GL393527          257069 3 +    341619 TAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5684550 3 +  72422247 TAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44122563 3 -  99891981 TAT
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124995014 3 - 192294377 TAT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122259372 3 - 180432695 TAT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121515276 3 - 127223203 TAT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20058075 3 + 128169293 TAT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4083651 3 +  55844845 CAT
i canFam3.chr18                C 0 I 193
e gorGor3.chr9                  48962744 3861 + 121947112 I
e rheMac3.chr3                 124543593 324 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=685477.000000
s hg38.chr14_KI270725v1_random    113093 311 +    172810 CTACTTCTCAAGCATTCATCTTTGCAAATGAAACAATCCCAAGCTCTTATAATGCACATCATATAAAGGGGAGATTAGTCAATATATGTTTCAGAAATAATTATGTAGTA-TTTGTAAG-AAATTGAAAATTTAGATCCTTAACTCAG---ATAACAATAATCCAAATTAAAATTTGATTTCATTACATAATTTAAAATGACACCAGAATACTAGTAAAAATGTAGATAAGTTTATATAATCTATTTTAGCTGTAGGACTTTATTAGCATAAATTCAAATACAGGAACCAAAGTAAGATTGAGACCTATAGTCAAA
s panTro4.chrUn_GL393527          257072 312 +    341619 CTACTTCTGAAGCATTCATCTTTGCAAATGAAACAATCCCAAGCTCTTATAATTCACATCATATGAATGGCAGATTAGTCAAAATATGGTTCAGaaataattatgtaata-tttataagaaaattaaaaatttatatCCTTAACTCAG---ATAACAATAATCCAAATTAAAATTTGATTTCATTACATAATGTAAAATGACACCAGAATACTAGTAAAAATGTAAATAAGTTTATATAATCTTTTTTAGCTGTAGGACTTTATTAGCATAAATTCAAATACAGGAACCAAAGTAAGATAGAGACCTATAGTCAAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5684553 312 +  72422247 CTACTTCTCAAGCATTCATGTTTGCAAATGAAACAATCCCAAGCTCTTATAATGCACATCATATAAAGGGCAGATTAGTCAATATATGGTTCAGaaataattatgtaata-tttataagaaaattaaaaatttaGATCCTTAACTCAG---ATAACAATAATCCaaattaaaatttgatttaattacataatttaaaatGACACCAGAATACTAGTAAAAATGTAGATAAGTTTATATAATCCTTTTTAGCTGTAGGACTTTATTAGCATAAATTCAAATACAGGAACCAAAGTAAGATTGAGACCTATAGTCAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44122566 315 -  99891981 CTACTTCTCAAGCATTCGTCTTTGCAGATGAATCATTCCCAAGCTCTTATAATGCACAGCATAAAAAGGGCAGATTAGTCAATATATGGTTCAGAAATAATGATGTAATA-TTTATAAGAAAATTAAAAATTTAGATCCTTAACTCAGATAATAACAATAATCCAAATTAAATTTTGATTTAATTACATAATTTAAAATGACACCAGAATACTAGTAAAAATGTAGAAAAGTTTATATAATCCTTTTTAGCTGTAGGACTTTATTAGCATAAATTCAAACACAGGAACCAAAGTAAGATTAAGACCTATAGTAAAA
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124995017 312 - 192294377 CTACTTCTCAAGTATTCATCTTAGCAAATGAATCAATCTTAATCTCTTATAGTGCACATCATATAAAGGGCAGATTAGTCAATATATGGTTCAGAAATAATGATGTAATA-TTTATAAGAAAATTAAAAATTTAAATCCTTAACTCAG---ATAACAATAATCCAAATTAAAATTTGATTTAATTACATAATTTAAAATGACACCAGACTACTAGTAAAAATGTAAGTAAGTTTATATAATCCTTTTTAGCCGTAGGACTGTATTAGCATAAATTCAAATACAGGAGCAAAAGTAAGATTGAGAGCTGTAGTAAAT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122259375 312 - 180432695 CTACTTCTCAAGCATTCATCTTAGCAAATGAATCAATCTTAATCTCTTATAGTGCACATCATATAAAGGGCAGATTAGTCAATATATGGTTCAGAAATAATGATgtaata-tttataagaaaattaaaaatttaaatccttaactcag---ataacaataatccaaattaaaatttgatttaattacataatttaaaatgacaCCAGACTACTAGTAAAAATGTAAGTAAGTTTATATAATCCTTTTTAGCCGTAGGACTGTATTAGCATAAATTCAAATACAGGAGCAAAAGTAAGATTGAGAGCTGTAGTAAAT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121515279 315 - 127223203 CTACTTCTCAAGCATTCATCTTAGCAAATGAATCAATCTTAATCTCTTATAGTGCACATCATATAAAGGGCAGATTAGTCAATATATTGTTCAGAAATAATGATGTAATA-TTTATAAGAAAATTAAAAATTTAAATCCTTAACTCAGATAATAACAATAATCCAAATTAAAATTTGATTTAATTACATAATTTAAAATGACACCAGAATACTAGTAAAAATGTAGGTAAGTTTATATAATCCTTTTTAGCCATAGGACTGTATTAGCATAAATTCAAATACACGAGCAAAAGTAAGATTGAGAGCTGTAGTAAAC
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20058078 316 + 128169293 CTACTTCTCAAGTGTTCATCTTTGCAAATGAATCAATTTCAAGTTCTTATAATGCACTTCGTATAAAGGGCAGGTTAGTCAATATATGGTGCAGAAATAATCATGTAATACTTTATAAGAAAATTAAAAATTTAGAGACTTAACTCAGATAATAACAATAACCCAAATTAAAATTGGATTTAATTATGTAATTAAAAATGACATCAGAAAACTACTAAAAATGTAGATAAGTTTACATAATCCTTTTTAGCTGTAGGACTTTCTTAGCATAATTTCAAATACAAGAACCAAAATAAGATTGAGAGATATAGTAAAA
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e rheMac3.chr3                 124543593 324 - 198365852 M
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=96736.000000
s hg38.chr14_KI270725v1_random    113404 39 +    172810 GGTTAAAATGTACACATTATAAGGGCATGATTAA--ACTAA
s panTro4.chrUn_GL393527          257384 39 +    341619 GGTTAAAATGTACACATTATAGGGGCATGATTAA--ACTAA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5684865 39 +  72422247 GGTTAAAATGTACACATTATAGGGGCAGGATTAA--ACTAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44122881 39 -  99891981 GGTTAAAATGTACATGTTACAGTGGCGTGATTAA--ACTAA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124543921 39 - 198365852 GGTTAAAATGTACACATTATATTGGTATAATTAA--ACTAA
i rheMac3.chr3                 M 324 I 110
s macFas5.chr3                 124995329 39 - 192294377 GGTTAAAATGTACACATTATATTGGTATAATTAA--ACTAA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122259687 39 - 180432695 GGTTAAAATGTACACATTATATTGGCATAATTAA--ACTAA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121515594 39 - 127223203 GGTTAAAATGTACGCATTATAGTGGCATAATTAA--ACTAA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20058394 33 + 128169293 GCCTAAAATGTACACattata--------attaaatactaa
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=140624.000000
s hg38.chr14_KI270725v1_random    113443 104 +    172810 ------------------------------------------------TTTA----------------------AAGCATAATAACATGGAGAAATGTTGCAAAACATATA-TTTTACTGAATTAATTGTTAA------TATCTAATCATTATGTAAGAACA---------------AAATTAAAGAGTAGCTACA
s panTro4.chrUn_GL393527          257423 104 +    341619 ------------------------------------------------TTTA----------------------AAGCATAATAACATGGAGAAATATTGCAAAACATACA-TTTTACTGAATTAATTGTTAA------TATCTAATCATTATATGAGAACA---------------AAATTAAAGAGTAGCTaca
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5684904 104 +  72422247 ------------------------------------------------TTTA----------------------AAGCATAATAACATGGAGAAATATTGAAAAACATACA-TTTTACTGAATTAATTGTTAA------TATCTAATCATTAAGTGAGAACA---------------AAGGTAAAGAGTAGCTACA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44122920 106 -  99891981 ------------------------------------------------TTTA----------------------AAGCATAATAACATGGGGAAATATTGCAAAATATATA-TTTTATTGTATTAATTGTTAATATTCTTATTTAATCAT----TGAGAACA---------------AAGGTAACGAGTAGCTaca
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124995368 113 - 192294377 ---------------------------------------------------------------------------AGCAT----CCATGGAGAAATATTACAAAATATACATTTTTACTGTATTAATGGTTAATATTCTTATTTAATCATTAAGTGAGAACATCAATTCTTT----GCAGATAAAGAGTAGCTACA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122259726 118 - 180432695 ------------------------------------------------TTTA----------------------AAGCAT----CCATGgagaaatattacaaaatatacatttttactgtattaatggttaatattcttatttaatcATTAAGTGAGAACATCAATTCTTT----GCAGATAAAGAgtagctaca
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121515633 118 - 127223203 ------------------------------------------------TTTA----------------------AAGCAT----CCATCGAGAAATACTGCAAAATATACATTTTTACTGTATTAATGGTTAATATTCTTATTTAATCATTAAGTGAGAACATCAATTCTTT----GCAGGTAAGGAGTAGCTACA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20058427 185 + 128169293 ttagaaacaaattaattataatctataatcatatattatatattataatttatattaaatatattaCACATTATAAGCAT----ATAATAATAAATACTGCAAAATATACA-TTTTATGATAT---TGGTTAATAT---TATTTAATCATTCAGTAAGAACATCAAGTCTTTACACGTAGGTAATGAGTAGCTATA
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e rheMac3.chr3                 124543960 110 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=-4749.000000
s hg38.chr14_KI270725v1_random    113547 4 +    172810 CA----AG--
s panTro4.chrUn_GL393527          257527 2 +    341619 ca--------
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5685008 8 +  72422247 CACAAACA--
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44123026 2 -  99891981 ca--------
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124995481 2 - 192294377 CA--------
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122259844 2 - 180432695 ca--------
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121515751 2 - 127223203 CA--------
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20058612 2 + 128169293 CA--------
i calJac3.chr8                 C 0 C 0
s micMur1.scaffold_115895            468 4 -      1383 CA------AG
i micMur1.scaffold_115895      N 0 N 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e rheMac3.chr3                 124543960 110 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=993.000000
s hg38.chr14_KI270725v1_random    113551 3 +    172810 CAC
s panTro4.chrUn_GL393527          257529 3 +    341619 cac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5685016 3 +  72422247 CAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44123028 1 -  99891981 --c
i nomLeu3.chr17                C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e rheMac3.chr3                 124543960 110 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                  20058614 0 + 128169293 C
e chlSab2.chr21                121515753 0 - 127223203 C
e papAnu2.chr3                 122259846 0 - 180432695 C
e macFas5.chr3                 124995483 0 - 192294377 C

a score=82085.000000
s hg38.chr14_KI270725v1_random    113554 35 +    172810 ACACCCACACACAAGTGCAATATTGTCAAATAAAC-
s panTro4.chrUn_GL393527          257532 35 +    341619 acacacacacacaAGTGCAATATTGTCAAATAAAC-
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5685019 35 +  72422247 ACACCCACACAAAAGTGCAATATTGTCAAATAAAT-
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44123029 35 -  99891981 acacacacacacaAGTGCAATATTGACAGATAAAC-
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124544070 35 - 198365852 ACACACACACACAAGTGCAATATTGTCAAATAAAT-
i rheMac3.chr3                 I 110 I 4
s macFas5.chr3                 124995483 30 - 192294377 -----CACACACAAGTGCAATATTGTCAAATAAAT-
i macFas5.chr3                 C 0 I 4
s papAnu2.chr3                 122259846 30 - 180432695 -----cacacacaagtgcaatATTGTCAAATAAAT-
i papAnu2.chr3                 C 0 I 4
s chlSab2.chr21                121515753 30 - 127223203 -----CACACACAAGTGCAGTATTGTCAAGTAAAT-
i chlSab2.chr21                C 0 I 4
s calJac3.chr8                  20058614 31 + 128169293 -----CACATACAAGTGCAATGTGGTCAAACAATGT
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=4500.000000
s hg38.chr14_KI270725v1_random    113589 1 +    172810 G
s panTro4.chrUn_GL393527          257567 1 +    341619 G
i panTro4.chrUn_GL393527       C 0 C 0
s panPan1.JH650444               1734907 1 +   4227291 G
i panPan1.JH650444             N 0 N 0
s ponAbe2.chrUn                  5685054 1 +  72422247 G
i ponAbe2.chrUn                C 0 I 2
s nomLeu3.chr17                 44123064 1 -  99891981 G
i nomLeu3.chr17                C 0 I 2
s rheMac3.chr3                 124544109 1 - 198365852 G
i rheMac3.chr3                 I 4 C 0
s macFas5.chr3                 124995517 1 - 192294377 G
i macFas5.chr3                 I 4 C 0
s papAnu2.chr3                 122259880 1 - 180432695 G
i papAnu2.chr3                 I 4 C 0
s chlSab2.chr21                121515787 1 - 127223203 G
i chlSab2.chr21                I 4 C 0
s calJac3.chr8                  20058645 1 + 128169293 G
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=1927212.000000
s hg38.chr14_KI270725v1_random    113590 706 +    172810 ATGTTCAGCTACACTAGAAATCACATCTGTGTTTT-CTCCACAGA-----AAAGATTAAAAATCACAATAATATTTATTGTACATACGGAGGtaaagatactcaaa--atattaccctaaaatacatt----ttttt-----tgagatggagttttgcttttgttgcccaggctagagtgcaatggcacaatcttggctcactgcaacctcagcct-cccagggtcaagtaattctcctagctcagcctcccaagtagctgagattacaggcatgcaccaccacactcggctaa-ttttttgtatttagtagagacggggtttcaccatgttggtcaggctggtctccaactcctgacttcaggtgatctaccca------cttcagcctcccaaagtgctgggattacaggcgtgcacc--------tgggcagctttttgacatatttcaagatggctactcggaagactagagatagcttcttctacaagaatagctgaaaagctgtgtttgttggggagatttgcatttgtagagaaaaactgtattgatgtagacaggctttccctgagatactcccttgtgtgggtttaggaaagattaac-tgagtctggcacgtttacatttctaaaaaccaattcctatctatacttcccaagaggagggctgctccctgtgatgtttcatccatgtaacaagaccacctctgctgtcaggctcctctttcttccttgtcg
s panTro4.chrUn_GL393527          257568 712 +    341619 ATGTTCAGCTACTCTGGAAATCACACCTGTGTTTT-CTCCACAGAAGAGTAAAGATTAAAAATCACAATAATATTTATTGTACATATGGAGAtaaagatactcaaa--atattgcactaaaatacatt---attttt-----tgagatggagttttgcttttattgcccaggctggagtgcaatggcacaaccttggctcactgcaacctcagcct-cccagggtcaagtaattctcctagctcagcctcccaagtagctgagattacaggcatgcaccaccacactcggctaa-ttttttgtatttagtagagaaggggtttcaccatgtaggtcaggctggtctctaactcctgacttcaggtgatctaccca------cttcagcctcccaaagtgctgggattacaggcgtgtgcc--------tgggcagctttttgacatatttcaagatggctactcggaagactggagatagcttcttctacaagaatagctgaaaagctgtgtttgttggggagatttgcatttgtagagaaaatctgcattgatatagacaggctttcactgagatactcccttgtctgggtttaggaaagattaac-tgagtctggcacgtttacatttctaaaaaccacttgctatctatacttcccaagaggagggctgctccctgtgaggtttcatccatgtaacaagaccacctctgctgccaggttcctctttcttccttgtcg
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5685057 715 +  72422247 ATGTTCAGCTACACTAGAAATCACACCTGTGTTTT-CTCCACAGAAGAGTAATGATTAAAAATCACAATAATATTTATTGTACATATGGAGAtaaagatactcaaa--ctattaccctaaaatactttttttttttt-----tgagatggagttttgcttttgttgcccaggctggagtgcaatggcacaatcttggct-actgcaacctcagact-cccagggtcaagtaatcctcctagctcagcctcccaagtagctgagattacaggcatgtgccaccacacttggctaatttttttgtatttagtagagatggggtttcaccaagttggtcaggctggtcttgaactcctgacttcaggtgatctaccca------cttcagcctcccaaagtgctgggattacaggcgtgcacc--------tggccaactttttgacatatttcaagatggctactcggaagactggaaatagcttcttctagaagaatagctgaaaagctgtgtttgttggggagatttgcatttgtagagcaaatctgcattgatatagacaggctttccctgagatactcccttgtctgggtttaggaaagattaac-tgagtctggcacgtttacatttttaaaaaccatttcctatctatacttcccaagaggagggctgctccctgtgaggtttcatccatgtaacaagaccacctctgctgtcaggctcctctttcttccttgtca
i ponAbe2.chrUn                I 2 C 0
s nomLeu3.chr17                 44123067 710 -  99891981 ATGTTCAGCTACACTAGAAATCACACCTGTTTTTT-CTCCAAAGAAGAGTAAAGATTAAAAATCACAATAATATTTATTGTACATATGGAGGtaaagatactcaaa--atattaccctaaaatacattttttttttt-----tgagatggagttttgcttttattgcccaggctggagtgcaatggcacaatcttggctcactgcaacctcagcct-cccagggtcaagtaattctcctgcctcagcctcccaagtagctgagattacaggcatgcaccaccacactcagctaa-ttttttgtatttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatctaccca------cttcagcctcccaaagtgctgggattacaggcgtgcaca--------tggccaactttttggcatatttcaagatggctactcggaagactggaaatag---cttctacaagaatagctgaaaagccgtgtttgttggagagatttggatttgtagagaaaatctgcattgatatagacaggctttccctgagatactcccttgtctgggtttaggaaagattaac-tgagtctggcatgtttaaagttctaaaaaccatttcctatctattcttcccaagaggagggctgctccctgggaggtttcatccacgtaacaagaccacctctgctgccaggctcctc--tcttcctcctcg
i nomLeu3.chr17                I 2 C 0
s rheMac3.chr3                 124544110 726 - 198365852 ATGTTCAGCTACACTAGAAATCACACCTGTTTTTTTCTCTACACAAGAGTAAAGATTAAAAATCACAATAATAGTTATTGTACATAtggaggtaaacaaactcaaa----tttaccctaaaatacattttttttttt---aatgagacggagttttgcttttgttgcccaggctggagtacaattgcacagtctcagctcattgcaacctctgcctccccagagtcaagcaactctcctgcctcagcctcccaagtagctaagattacaggcatgtgctgccatacttatctaa-ttttttgtatttagtagagacggggtttcatcatgttggtcaggctgatctcaagctcctgacctcaggtgatccaccca------cctcagcctcccaaggtgctgggattacaggggtgcaccactgcacggggccaactttttgacatatttcaagatggctactcggaagacaggaaatagcttcttctacaagaatagctgaaaacctagctttgttggggagatttgcattggaagagaaaatgtgcattgatatagacaggctttccctgagatactcccttgtctgggtctaggaaagattaacttgagtctggcacgtttaaagttctaaaaatcatttgctatctattcttcccaaggggagggctgctccctgtgaggcttcatccacaaagcaagatcacctctgcttgcaggttccttttccttcctcataa
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124995518 725 - 192294377 ATGTTCAGCTACACTAGAAATCACACCTGTTTTTTTCTCTACACAAGAGTAAAGATTAAAAATCACAATAATAGTTATTGTACATAtggaggtaaacaaactcaaa----tttaccctaaaatacattttttttttt----atgagacggagttttgcttttgttgcccaggctggagtgcaattgcacagtctcagctcattgcaacctctgcctccccagagtcaagcaactctcctgcctcagcctcccaagtagctaagattacaggcatgtgctgccatacttatctaa-ttttttgtatttagtagagacggggtttcatcatgttggtcaggctgatctcaagctcctgacctcaggtgatccaccca------cctcagcctcccaaggtgctgggattacaggggtgcaccactgcacggggccaactttttgacatatttcaagatggctactcggaagacaggaaatagcttcttctacaagaatagctgaaaacctagctttgttggggagatttgcattggaagagaaaatctgcattgatatagacaggctttccctgagatactcccttgtctgggtctaggaaagattaacttgagtctggcacgtttaaagttctaaaaatcatttgctatctattcttcccaaggggagggctgctccctgtgaggtttcatccacaaagcaagatcacctctgcttgcaggttccttttccttcctcataa
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122259881 729 - 180432695 ATGTTCAGCTACACTAGAAATCACACCTGtttttttCTCTACAGAAGAGTAAAgattaaaaatcacaataatagTTATTGTACATATGGAGGTAAACAAACTCAAA----TTTaccctaaaatacatttttttttttttttatgagatggcgttttgcttttgtttcccaggctggagtgcaatagcacagtctcagctcattgcaacctctgcctccccagagtcaagcaactctcctgcctcagcctcccaagtagctaagattacaggcatgtgccgccatacttatctaa-ttttttgtatttagtagagatggggtttcatcatgttggtcaggctgatctcaagctcctgacctcaggtgatccaccca------cctcagcctcccaaggtgctgggattacaggggtgcaccactgCACGGGGCCAACTTTTTGACATATTTCAAGATGGctactcagaagacaggaaatagcTTCTTCTACAAGAATAGCTGAAAACCTAGCTTTGTTGGGGAGATTTGCATTGGAAGAGAAAATCTGCATTGATATAGACAGGCTTTCCCTGAGATACTCCCTTGTCTGGGTCTAGGAAAGATTAACTTGAGTCTGGCACGTTTAAAGTTCTAAAAATCATTTCCTATCTATTCTTCCCAAGGGGAGGGCTGCTCCCTGTGAGGTTTCATCCACAAAGCAAGATCACCTCTGCTTGCAGgttccttttccttcctcataA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121515788 724 - 127223203 ATATTCAGCTACACTAGAAGTCACACCTGTTTTTTCCTCCACAGAAGAGTAAAGATTAAAAATCATAATAGTAGTTATTGTATATATGGAGGtaaacaaactcaaa--atattaccctaaaatacattgttattt------atgagacggagttttgcttttgttgcccaggctggagtgcaatagcacagtctcagctcactgcaacctctgcct-cccagagtcaagcaattttcctgcctcagcctcccaagtagctgagattacaggcatgtgccgccatacttgtctaa-ttttttgtatttagtagagacggggtttcatcatgttggtcaggctgatctcaaactcctgacctcaggtgatccaccca------cctcagccttccaaagtgctgggattacaggggtgcaccactgcacggggccaactttttgacatatttcaagatggctactcggaagacaggaaatagcttcttctacaagaacagctgaaaacctagctttgttggggagatttgcatttgtagagaaaatctacattgatatagacaggctttccctgagatactcccttgtctgggtctaggaaagattaacttgagtctggcacgtttaaaggtctaaaaaccatctcctacctattcttcccaaggggagggctgctccctgtgaagtttcatccacataacaagaccacctctgcttgcaggttccttttccttcctcctaa
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20058646 714 + 128169293 ATGTTCA------CTAGAAATCACACCTGTTTTTT-CTCTACAGAAGAGTAAAAATTAAAAGTTACAATAGTAGTTAATGTACGTATGGAGGtaaagaaacccaaaatattttaccctaaaatacttt---tttttt-----tgagacagagttttgctctagttgtccaggctggagtgcattggcacaatttcagctcactgcaacctccacct-cccag-ttcaagggattctcctgcctcagactctcaagtagctgagattacaggcatttaccattatgcctagctca-ttctttgtatttagtagaggcagggttttactatgttggtagtgcagatctccaacccctgacctcaggagatccacccatctcggcctctgcctcccaaagtgctgggattacag------accgctgcactcggcacaccatttgacatatttcaagatggctactcacaagacc-gaaacagcttcttctacaagtgtagctgaaaagctgtctttgttggggagatttgcatttgtagagaaaatctgcattgttatagacaggctttccctgagatactcctttgtctgtgtctagggaagattaac-tgagtttggcacctataaaggtctaaaaaccatttcccatctattcttcccaaggggtgggctgctctctgtgaggcttcatacacataacaagaccacctctgctgccagcctcctcttccttcctcactg
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=-864.000000
s hg38.chr14_KI270725v1_random    114296 1 +    172810 -t
s panTro4.chrUn_GL393527          258280 1 +    341619 -t
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5685772 1 +  72422247 -t
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44123777 1 -  99891981 -t
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124544836 1 - 198365852 -t
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124996243 1 - 192294377 -t
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122260610 1 - 180432695 -T
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121516512 1 - 127223203 -t
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20059360 1 + 128169293 -t
i calJac3.chr8                 C 0 C 0
s micMur1.scaffold_10587            8722 1 +     28349 a-
i micMur1.scaffold_10587       N 0 N 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=407038.000000
s hg38.chr14_KI270725v1_random    114297 158 +    172810 cacctgtattccgcaaagcctgatttaccaacctacagctctgtgttttctgtaacctcaagacagcataGGCGTGTTGACTACCTTGCCTTTTCTGGAGTTTTtatatatatagcatatatttgt--atatctatttataatatacaaatatttgta----------ta
s panTro4.chrUn_GL393527          258281 158 +    341619 cacctgtcttccgcaaagcctgatttaccaacctacagctctgtgttttctgtaacctcaagacagcataGGCGTGTTGACTACCTTGCCTTTCCTGGAGTTTTtatatatatagtatatatttgt--atatctacttataatatacaaatatttgta----------ta
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5685773 158 +  72422247 ctcctgtcttccgcaaagcctgatttgccaacgtacagctctgtgttttctgtgacctcaagacagcataGGCGTGTTGACTACCTTGCCTTTCCTGGAGTTTTtatatatatagtatgtattcct--atatctatttataatgtacaaatatttgta----------ta
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44123778 168 -  99891981 cacttgtcttccacaaagcctgatttatcaacatacagctctgtgttttctgtaacctcaagacagcataGACGTGTTAACTACCTGGCCTTTCCTGAAGTTtatatacatatagtatatatttgt--atatatatttataatatacaaatatttgtatatatttgtgta
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124544837 154 - 198365852 cagctgtcttccgcaaagtctgatttaccaacatacagctc--tgttttctgtaacctcaaaacagcataGACGTATTAACTACCTTGCCTTTCCTGGAGTT--TAGatatatagtatatacttgt--atatatgtttataatatacaaatatttgta----------ta
i rheMac3.chr3                 C 0 I 339
s macFas5.chr3                 124996244 154 - 192294377 cagctgtcttccgcaaagtctgatttaccaacatacagctc--tgttttCTGTAACCTCAAAACAGGCTAGACGTATTAACTACCTTGCCTTTCCTGGAGTT--tagatatatagtatatacttgt--atatatgtttataatatacaaatatttgta----------ta
i macFas5.chr3                 C 0 I 10
s papAnu2.chr3                 122260611 156 - 180432695 CACCTGTCTTCCACAAAGTCTGATTTACCAACATACAGCTCTGTGTTTTCTGTAACCTCAAAACAGCATAGACGTATTAACTACCTTGCCTTTCCTGGAGTt--tagatatatagtatatacttgt--atatatgtttataatatacaaatatttgta----------ta
i papAnu2.chr3                 C 0 I 10
s chlSab2.chr21                121516513 156 - 127223203 cacctgtcttccgcaaagtctgatttaccaacatacagctctgtgttttctgtaacctcaaaacagcataGACGTATTAACTACCTTGCCTTTCCTGGAGTT--tagatatatagtatatacttgt--atatatgtttataatatacaaatatttgta----------ta
i chlSab2.chr21                C 0 I 10
s calJac3.chr8                  20059361 144 + 128169293 cacctgcctc------------atttgccaacataCAGCTCTGTGTTTTCTCTAACCTCA--ACAGCGTGGAAGTGTTAACTATGTTGCCTTTCCTGGAGCT--TTAatatatagtatatatttgtacatatatatttacagtatagaaatatttgta----------ta
i calJac3.chr8                 C 0 I 7
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=35432.000000
s hg38.chr14_KI270725v1_random    114455 18 +    172810 ---gttatatttttatatatt
s panTro4.chrUn_GL393527          258439 18 +    341619 ---gatatatttatatatatt
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5685931 18 +  72422247 ---tatatatttatatatatt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44123946 18 -  99891981 ---tatatgtttatatatact
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 124996408 18 - 192294377 ---tatatatttatatatatt
i macFas5.chr3                 I 10 C 0
s papAnu2.chr3                 122260777 18 - 180432695 ---tatatatttatatatatt
i papAnu2.chr3                 I 10 C 0
s chlSab2.chr21                121516679 18 - 127223203 ---tatatatttttatatatt
i chlSab2.chr21                I 10 C 0
s calJac3.chr8                  20059512 21 + 128169293 gtatgtatattcatatatatT
i calJac3.chr8                 I 7 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e rheMac3.chr3                 124544991 339 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=339287.000000
s hg38.chr14_KI270725v1_random    114473 124 +    172810 atgtaAACTGCAAGTGCATACTTGTGCAC------ATATCTGTAAACCT--TTTTTCTGTTAATTTGTACATTATCAGTTTGTTTTATAGACTCAAATAATTAAAGCTTCAAGGGAAAAATTTAAACTTTCC
s panTro4.chrUn_GL393527          258457 126 +    341619 atgtaaactccaagtgcatacttgtgtac------atatctgtaaaccttcttttcctgttaatttgtacattatcagtttattttaTAGACTCAAATAATTAAAGCTTCAAGGGAAAAATTTAAAATTTAC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5685949 132 +  72422247 atgtaaactccaagtgcatacttgtgcacataattatatctgtaaacctttttttcctgttaatttgtacattatcagtttgttttaTGGACTCAAATAATTAAAGCTTCAAGGGAAAAATTTAAACTTTCC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44123964 132 -  99891981 atgtaaactccaagtgcatacttgtgcacataattatatctgtaaacctttttttcctgttaatttgtacattatcagtttgttttaTAGACTCAAATAATTAAAACTTCAAGGGAAAACTTTAAACTTTCC
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124545330 128 - 198365852 ATGTAAACTCCAAGTGCATACTGGTGCACATA---ATATCTGTAAGCCTT-TTTTTCTGTGAATTTGTACATTATCAGTTTGTTTTATAGATTCAAATAATTGAAGTTTTAAGGGAAAAATTGAAAGTTTCC
i rheMac3.chr3                 I 339 C 0
s macFas5.chr3                 124996426 128 - 192294377 atgtaAACTCCAAGTGCATACTGGTGCACATA---ATATCTGTAAGCCTT-TTTTTCTGTGAATTTGTACATTATCAGTTTGTTTTATAGATTCAAATAATTGAAGTTTTAAGGGAAAAATTGAAAGTTTCC
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122260795 125 - 180432695 atgtaaactCCAAGTGCATACTTGTGCAC------ATATCTATAagcctt-tttttctgtgaatttgtaCAGTATCAGTTTGTTTTATAGATTCAAATAATTGAAGTTTCAATGGAAAAATTGAAAGTTTCC
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121516697 128 - 127223203 atgtaaatTCCAAGTGCATACTTGTGCACATA---GTATCTGTAAGCCTT-TTTTTCTGTGAATGTGTACATTATCAGTTTGTTTTACAGATTCAAACAATTGAAGTTTCAAGGGAAAAATTGAAAGTTTCC
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20059533 128 + 128169293 TTGTAAACTCCAAGTGCATACGTGTGCACATA---ATATCTGTAAGCCTT-TTCACATATTAATTTGTACATTATCAGTTTGTTTTATAAACGCAAATAATTGAAGCCTCAAGGGAAAAATTTAAACTTTCC
i calJac3.chr8                 C 0 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e canFam3.chr18                  4083654 193 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=803639.000000
s hg38.chr14_KI270725v1_random    114597 263 +    172810 TATAGAGAAAAGACAAATATATAGGTGACAAATAATATT------TAGAGTGTAAG-------ACGCTTTTTAAAGGTATATTTGCAAATTGTGTCAAAACATTGAAATATACATTTGTTATTTTAAC------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCC----------AAATACATAGTATA----TGCAGAAAATTTAGCAACATATCTATGTAGCACCTTACTGTGCATTACTGTAACCAGCCGTCTAATATGAAGAATTAATTAAGGTAGCAGCTACTTTTCAAATAGCGCA
s panTro4.chrUn_GL393527          258583 263 +    341619 TATAGAGAAAAGACAAATATATAGGTGACAAATAATATT------TAGAGTGTAAG-------ATGCTTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATATACATTTGTTACTTTAAC------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCC----------AAATACATAGTATA----TGCAGAAAACTTAGCAATATATCTATGTAACACCTTACTGTGCATTACTCTAACCAGCCATCTAATATAAAGAACTAATTAAGGTAACACCTACTTTTCAAATATCACA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5686081 263 +  72422247 TATAGAGAAAAGACAAATATATATGTGACAAATAATATT------TAGAGTGTAAG-------ACGATTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATACACATTTGTTACTTTAAC------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACATAGTATA----TGCCAAAAATTTAGCAATATTTGTATGTAGCACCTTACTGTGCATTACTGTAACCAACTGACTAATATAAAGAACTAATTAAGGTAGCACCTACTTTTCAAATATCTCA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44124096 266 -  99891981 TATAGAGAAAAGACAAATATATATGTGAC----AATATT------TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATATACATTTGTTACTTTAAG------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACATATTATA----TACAGAAAATTTAGCAATATTTGTATGTAGCACCTTACTGTGCATTACTGTAACCAACTGTCTAATATAAAGAACTAATTAAGGTAGCACCTACATTTCAAATATCTCA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124545458 266 - 198365852 TGTAGAGAAAAGACAAATTTATATATGACAAATAATACT------TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTGTATCAAAACATTTAAATACACATTTGTTACTT----------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACACAATATA----TACAGAAAATTTAGCAATATTTGTATGTAGCACCTTACAGTGCATTACTGTAACCAAGTGTCTAATATAAAGAACTAATTAAGGTAGCACCTCCTTTTCAAATATCTCA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124996554 266 - 192294377 TGTAGAGAAAAGACAAATTTATATATGACAAATAATACT------TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATACACATTTGTTACTT----------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACACAATATA----TACAGAAAATTTAGCAATATTTGTATGTAGCACCTTACAGTGCATTACTGTAACCAAGTGTCTAATATAAAGAACTAATTAAGGTAGCACCTCCTTTTCAAATATCTCA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122260920 266 - 180432695 TgtagagaaaagacaaatttatatATGACAAATAATACT------TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTCTgtcaaaacatttaaatacacatttgttactt----------------------------------------------------------------------------------------tataaaat-----ttcaaataattta----agct----------aaatacacaatata----tacagaaaatttaGCAATATTTGTATGTAGCACCTTACAGTGCATTACTGTAACCAAGTGTCTAATATAAAGAACTAATTAAGGTAGCACCTCCTTttcaaatatctca
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121516825 266 - 127223203 TGTAGAGAAAAGACAAATATATATATGACAAATAATACT------TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATATACATTTGTTACTT----------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACACAATATA----TACAGAAAATGTAGCAATATTTGTATGTAGCACCTTACAGTGCATTACTGTAACCAACTGTCTAACATAAAGAACTAATTAAGGTAGCACCTCCTTTTCAAATATCTCA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20059661 364 + 128169293 TATAGAGAAAAGACAAATGTATATATGACAAATAATATT------TAGAGTGTAAGTTGCTGAAAACCTTATAAAGATACATTTGCAATTCATGTCaaaaaatttaaatatacatttgttactttaactataaaatttcaaattttactttaaatttcaaataagttaagtataaaatttcaattttactttaaattttaaataatttactttataaaat-----ttcaaataatttactttaactataaaatttCAAATACACAATATA----TACAGAATATTTGGAAATATTTATATGTAGCACCT----GTGAATTATTATAACCAACTGTCTAATATAAGGAACTGATTAAGGTAGCACCTACTTTTCGAATATGTCA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4083847 279 +  55844845 tatagagagaagacagacatgtggg-----attaatatttctgcctagaatgtaaactgttgaaacctttatacagctatatttgcaatatgtagtaaaaactttgaatatgcatttatttccttaac------------------------------------------------------------------------------------tatgaaatttatcttcaaataattta----tact----------gaaTGCACAATATACATGTATGAGGAATTTAGCAATAATTATATGCAGCTCCACACTGTACACTACTGTAACCAATTGTGTAATACAGGAAATTAATTAAAGTAGCACCTACTTTTC-ATTATCTCA
i canFam3.chr18                I 193 C 0
e gorGor3.chr9                  48962744 3861 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=5005.000000
s hg38.chr14_KI270725v1_random    114860 1 +    172810 T
s panTro4.chrUn_GL393527          258846 1 +    341619 T
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  48966605 1 + 121947112 T
i gorGor3.chr9                 I 3861 I 823
s ponAbe2.chrUn                  5686344 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44124362 1 -  99891981 T
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124545724 1 - 198365852 T
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124996820 1 - 192294377 T
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122261186 1 - 180432695 t
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121517091 1 - 127223203 T
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20060025 1 + 128169293 T
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4084126 1 +  55844845 T
i canFam3.chr18                C 0 I 4
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=2794667.000000
s hg38.chr14_KI270725v1_random    114861 819 +    172810 TTTTTTGACAGACCTATTAAATAAGACCAATAACATTTAAACTTTATTTTTAAATTTGCAGAATAGTGGTTTTCAGCAGATGGTTTATTTTAGCAAATTCCATCTTCACATTGTGCTATGCTTTTATGATTTCCAGCAGTTAACGGATAATATTTTACTGCTGAAACTACCATTTGTGATATAATTGCTCATTATGGGCCTTAAAACACAAGCAATATAATTATTTTCAACTTGGAGCAAATTAAAATCTTATCAGCAATTT-AAAAACTCTTGAGTCGTCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGGAGAAGAACTCCAGCTGATTATGCTTTTTTTT-CTCTTCC----ATCCACCTCGCAGGTGTGTTAATAATTTCATTTCCCAGAAAATGTTCTTTCATATCCATCTTACAAGATGAGAGACCTTTTAACATCTTCCATTCGGATGTGATACCAGTAATGGAAAATATTCCAGCTTCATGAATATGGTGATACAAATGGTTATCCGTCTAACCTCTTTCAGTGCCAAATG-----TTTACTC-AGTGAATTACTCAGTTGACTGGTAATTTCTTCTGAAATCACTAATGAGAGGATCAGAGTTCTGGCTGTTGTCTGTATCTCACATGACTTCCAGTGCAGACAATTGTTTCTATGCAGCACAGAC-AGTTGAAAGGATTGACTTCCTACCTAGAATAGTTTCTGCT------GTGCTTCTTATCC-TTCTTGT---GGAGATTTCAGATTATCTGAATTGCTTTTCTATCTTAAG-AAAA------AACGCAACAATTCTCC
s panTro4.chrUn_GL393527          258847 822 +    341619 TTTTTTCACAGACCTCTTAAATAGGAAAAATAACATTTAAACTTTATTTTTAAATTTGCAGAATAGTAGTTTTCAGCAGATGGTTTATTTTAGCAAACTCCATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACGGATA--TTTTTACTGCTGAAACTATCATGTATGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAATTATTTTCAACTTGGAGCAAATGAAAATCTTATCAGCAATTT-AAAAACTCTATAGTCGTCTTCTTCTGGTTAATTATTTTAAACTCGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGGAGAAGAACTCAAGCTGATTATTCTTTCTTTT-CTCTTCC----ATCCACCTCGCAGGTGTGTTAATAATTTCATTTCTCAGAAAATGTTCTTTCATATCCATCTTACAAGATGAGAGACCTTTCAACATCTTCCACTCGAATGTGATACCAGTAATGGAAAATATTCCAGCTTCATGAATATGGTGATACAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTCACTTTACTC-AGTGAATTACTCAGTTGACTTGTAATTTCTTCTGAAATCACTAATGAGAGGATCAGAGGTCTGGCTGTGGTCTGTACCTCATATGACTCCCAGTGCAGACAATTGTTTCTATGGAGCACAGAC-AGTTGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTGCT------GTACTTCATATCC-TTCTTGT---GGAGATTTCAGATTATCTGAATTGCTTTTCTATCTTAAG-AAAA------AACGCAACAATTCTCC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5686345 824 +  72422247 TTTTTTCACAGACCTATTAAATAAGACAAATAACATTTAAACTTTATTTTTAAATTTGCAGAATAGTATTTTTCAGCAGATGGTTTATTTTAGCAAATTCCATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACGGATAATATTTTACTGCTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGAAAATTAAAATCTTATCAGCAATTT-AAAAACTCTAGAGTTGTCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGGAAAAGAACTCAAGCTGATTATTCTTTTTTTT-CTCTTCC----ATCCACCTCGCAGGTGTGTTAATAATTTCATTTCTCAGAAAATGTTCTTTCATAGCCATCTTACAAGATGACAGAACTTTTAACATCTTCCATTCGGATGTGATACCAGTAACGGAAAATATTCCAGCTTCATGAATATGGTGATACAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTTAATTACTCACTTGACTGGTAATTTCTTCTGAAATCACTAATGAGAGGATCAGAGATCTGGCTGTTGTCTGTACTGCATATGACTCCCAGTGCAGACAATTGTTTCTAAGGAGCACAGAC-AGTTGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTGCT------GTGCTTCTTATCC-TTCTTGT---GGAGATTTCAGAGAATCTGAATTGCTTTTCTATCTTAAG-AAAA------AACTCAACAATTCTCC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44124363 817 -  99891981 TTTTTTCACAGACCTATTAAATAAGACAAATAACATTTAAACTTTATTTTTAAATTTGCAGAATAATATTTTTCAGCAGATGGCTTATTTTAGCAAATTACATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACAGATAATATTTTACTGCTGAATCTATCATGTGTGATATAATTGCTCATAATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGCAAATTAAAATCTTATCAGCAATTT-AAAAAATCTAGAGTTGTCTTCTTCTGGTTAATTATTTTAAACTTTTATTTTTCTCTTTAGG-TTTTTAGTG-AGTTGTCTTATCAAGGAGAAGAATTCAAGCTGACTATTCTTTTTTTT-CTCTTCC----ATCCACCTTGCAGGTGTGTTAATAATTTCATTTCTCAGAAAATGTTCTTTCATATCCATCTTACAAGATGAGAGATCTTTTAACATCTTCCATTCAGATGTGATAACAGTAATGGAAAATATTCCAGCTTCATGAATATGGTGATACAAATAGTTATCCATCTAACCTCTTTCAGTGCAAAATGTTTACTTTACTC-AGTGAATTACTCAGTTGACTGGTAATTTCTTCTGAAATCACAGATGAGAGGATCAGAGGTCTGCCTGTTGTCTGTACCTCGTATGACTCCCAGTGCAGACAATTGTTTCTATGGAGCATAGAC--------AGAATTGACTTCCTGCCTAGAATAGTTTCTGCT------GTGCATCTTACCC-TTCTTGT---GGAGATTTCAGATTATCTGAATTGCTTTTCTATCTTAAG-AAAA------AACTCAACAGTTCTCC
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124545725 824 - 198365852 TTTTTTCACAGGCCtattaaataatacaaataacattttaactttatttttaaatttGCAGAATAATAATTTTTAGCAGATGGTTTATTTTAGCAAGTTCCATCTTCACATTGTGCTATGCCTTTATGAGTTCCAGCTGTTAACAGATAATATTTTACCACTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGCAAATTAAAATCTTACCAGCAATTA-AAAAAATCTAGAGTTGCCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGAAGAAGAACTCAAGCTGATTATTCTTTTTTTTCCTCTTCC----ATCCACCTTGCAGGTGTGTCAATAATTTCATTTCTCAGAAAATATTCTTTCATATCCATCTTACAAGATGAGAGGTCTTTTAACATCTTCCATTCAGATGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATGGTGATGCAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTGAATTACTCAGTTGACTGGTAA-TTCGTCTGGAGCCACAAATGAGAGGATCAGAGGTTTGGCTGTTGTCCGTACCTCATATGACTCCCAGTGCAGACAACTGTTTCTGTGGAGCACAGAC-AGTCGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTACT------GTGCTTCTTATCC-TGCTTGT---AGAGATTTCAGATTCTCTGAATTGCTTTTCTGTCTTAAG-AAAA------AACTCAACAATTCTCC
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124996821 825 - 192294377 TTTTTTCACAGGCCTATTAAATAATACAAATAACATTTTAACTTTATTTTTAAATTTGCAGAATAATAATTTTTAGCAGATGGTTTATTTTAGCAAATTCCATCTTCACATTGTGCTATGCCTTTATGAGTTCCAGCTGTTAACAGATAATATTTTACCACTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGCAAATTAAAATCTTACCAGCAATTA-AAAAAATCTAGAGTTGCCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGAAGAAGAACTCAAGCTGATTATTCTTTTTTTTCCTCTTCC----ATCCACCTTGCAGGTGTGTCAATAATTTCATTTCTCAGAAAATATTCTTTCATATCCATCTTACAAGATGAGAGGCCTTTTAACATCTTCCATTCAGATGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATGGTGATGCAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTGAATTACTCAGTTGACTGGTAATTTCGTCTGGAGTCACAAATGAGAGGATCAGAGGTTTGGCTGTTGTCCGTACCTCATATGACTCCCAGTGCAGACAATTGTTTCTGTGGAGCACAGAC-AGTCGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTACT------GTGCTTCTTATCC-TGCTTGT---AGAGATTTCAGATTCTCTGAATTGCTTTTCTGTCTTAAG-AAAA------AACTCAACAATTCTCC
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122261187 825 - 180432695 ttttttcacaggcctattaaataatacaaataacattttaactttatttttaaatttgcagaatagtaatttttagcagatggtttattttaGCAAACTCCATCTTCACATTGTGCTATGCCTTTATGAGTTCCAGCTGTTAACAGATAATATTTTACCACTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGCAAATTAAAATCTTAccagcaatta-aaaaaatctgGAGTTGCCTTCTTCtggttaattattttaaacttgtatttttctctttatg-tttttagTG-AGTTGTCTTATCAAGAAGAAGAACTCAAgctgattattcttttttttcctcttcc----atcCACCTTGCAGGTGTgttaataatttcatttctcagaaaatattctttcataTCCATCTTACAAGATGAGAGGCCTTTTAACATCTTCCATTCAGATGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATGGTGATGCAAATCGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTGAATTACTCAGTTGACTGGTAATTTCGTCTGGAGTCACAAATGAGAGGATCAGAGGTTTGGCTGTTGTCCGTACCTCATATGACTCCCAGTGCAGACAATTGTTTCTGTGGAGCACAGAC-AGTCGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTACT------GTGCTTCTTATCC-TGCTTGT---AGAGATTTCAGATtctctgaattgcttttctgtcttaag-aaaa------aactcaacaattctcc
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121517092 825 - 127223203 TTTTTTCACAGGCCTATTAAATAAGACAAATAACATTTTAACTTTATTTTTAAATTTGCAGAATAATATTTTTCAGCAGATGGTTTATTTTAGCAAATTCCATCTTCACATTGTGCTATGCCTTTATGAGTTCCAGCTGTTAACGGATAATATTTTACCACTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATGTAGTTATTTTCAACTTGGAGCAAATTAAAATCTTACCGGCAATTA-AAAAAATCTAGAGTTGCCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGAAGAAGAACTCAAGCTGATTATTCTTTTTTTT-CTCTTCC----ATCCACCTTGCAGGTGTGTTAATAATCTCATTTCTCAAAAAATATTCTTTCATATCCATCTTAAAAGATGAGAGGCCTTTTAACATCTTCCATTCAGATGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATGGTGATGCAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTGAATTACTCTGTTGACTGGTAATTTCGTCTGGAGTCACAAATGAGAGGATCAGAGGTTTGGCTGTTGTCCGTACCTCATACGACTCCCAGTGCAGACAATTGTTTCCATGGCGCACAGAC-AGTCGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTACT------GTGCTTCTTATCC-TGCTTGT---GGAGATTTCAGATTCTCTGAATTGCTTTTCTGTCTTAAGAAAAA------AACTCAACAATTCTCC
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20060026 809 + 128169293 GTTTTTCATAGACCTGTTAAATAAGGCAAATAACGTTTTAACTCTATTTTTAAATTTGCAGAATAGTATTTTTCAGCAGATGG-TTATTTTAGCAAATTTCATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACGAATAATATTTTACTGCTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCATCTTGGAGCAAATTAAAATCTTATCAGCAATTT-AAAAAATCTAGAGTTGTCTTCTGC-------TTATTTTAATATTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTGGTCTTATCAAG---AAGAGCTCAAGCTGATTATTCTTTTT----CTCCTCC-----TCCAGCTTGCAGGTGTGTTAATAATTTCATTTCTGAGAAAATGTTCTTTTCTATCCATTTTACAAGATGAGAGACCTTTTAAGATCTTCCATTCAGAAGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATAGTGATACAAATAGTTATCTGTCTACCCTCTTTCAGTGCCAAATGTTTGCTTTACTC-AATGAATTACTCAGTTGACTGGAAATTTGTTCTGCAATCACAAATGAGAGGATCAGAACTTTGGCTGTTGTCTGTACCTCGTATGACTCCCAGTGCAGGAAGTTGTTTCTATGGAGCACAGAC-AGTTGAAGGGATTGACTTCCTGCCTAGAATGGTTTCTGCT------GCGCTTCTTATCC-TGCTTGT---GGAGATCTCAGCTTATCTGAATTACTTTTCTGTCTTAAG-CAAA------ATCTCAATGATTCTCC
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4084131 823 +  55844845 TTTTTTCACAAATCTATTAAATAAGGCAAATAATGTTTTAACTTTATTTTT-AATTTGCAGAATACTATTTTTCAGCAGATGGTTTATTCTAACAAACTTCATGTTCACACTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACTGATAATATTTCACTGCTGAATCTATGATGTGTGATATAATTGCTCATTATGGGCCTTAAAACACCAGTAATATAGTTATTTTCAACTTCGAGCAAATTAAAATCTTATCAGCATTTTAAAAAAATCTACAGTTGTCTTCTTCTGGTTAATTATTTTAAACTTGTGTTTTTCTCTGTATATTTTTTAATGTTATTATTTTGTGAAGACTAAAAATTCAGGCTGATTATTGCTTCCCCT-CCCTACCCCGCCTTCAATTTGCAGGTGGGTTAATAGTTCCATTTCTGAGGAAATAATCTTTCCTATCTGGCTTACCAGCTGAGA-ATCCTTTAAGTTCTTCTAGT-AGATATAATAGCAGTAGTGGCAA--AATCCAACTTCATGGATACTGTGAAACAAATGGATCTCTCTCAAGC----TCTATTGGCAAATGTTTGGTGTATTCAAGAGCATGACTCAGTTGACTGGT--CTTTTTCTGAAATTCCAAATGG------TAGACTTTGGGCTATTTTCTGTA---------ACTCCAAGTGTAGACCATCGTGTCTTTGGAGCACAGAAGAGTTGAAAGCATTGACTTCATGTTTAGACTAGTTTCTGCCCAGAGAGTGCTCTGTGTCCACTCTTGTCTGACAGATCGCAGATAATCTGGATTACTTTTCTGTTTTAAG-AAAAACAAACACCTCAACAAGTCTCT
i canFam3.chr18                I 4 C 0
e gorGor3.chr9                  48966606 823 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=3685.000000
s hg38.chr14_KI270725v1_random    115680 2 +    172810 -CA
s panTro4.chrUn_GL393527          259669 2 +    341619 -CA
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  48967429 2 + 121947112 -CA
i gorGor3.chr9                 I 823 I 659
s ponAbe2.chrUn                  5687169 2 +  72422247 -CA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44125180 2 -  99891981 -CA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124546549 2 - 198365852 -CA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124997646 2 - 192294377 -CA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262012 2 - 180432695 -ca
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121517917 2 - 127223203 -CA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20060835 2 + 128169293 -CA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4084954 2 +  55844845 TT-
i canFam3.chr18                C 0 C 0
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=865264.000000
s hg38.chr14_KI270725v1_random    115682 283 +    172810 ----CCTGAGAGGAATGCAAACTGTAGTAAGTTAGCAGAACCAATCCGTAAAGCTTTTACATTGTTT--GTTGCAAAATGCAG--CGCTGGTGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTAGGCAAATCTGTATTCCCGAGACAGAGTGCCCTTTTGGTGAGCTATAAGCACACTCAAT---GGTAGGCTGAAATACTAGCTTTTATCTATGGCGAAATGGAATCATATCAGTGATTTTTTTAAAAAGGAAATTTAACT
s panTro4.chrUn_GL393527          259671 283 +    341619 ----CCTGAGAGGAATGTAAACTGTAGTAAGTTAGCAGAACCAATCTGTAAAATTTTTACATTGTTT--GTTGCAAAATGCAG--CGCTGGGGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTAGGCAAATCTGTATTCCCGAGAAAGAGTGCCCTTTTGGTGAGCTATAAGCACACTCAAT---GGTAGGCTGAAATACTAGCTTTTATCTATGGCGAAATGGAATCATATCAGTGATTTTTTTAAAAAGGAAATTTAACT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5687171 283 +  72422247 ----CCTGAGAGGAATGTAAACTGTAGTAAGTTAGCAGAGGCAATCCGTAAAGATTTTACATTGTTT--GTTGTAAAATGCAG--CGTTGGTGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTAGGCAAATCTGTATTCCCGAGACAGAGTGCCCTTTTGGTTAGCTATAAGTACACTCAAT---GGTAGACTGAAATATTAGTTTTTATCTATGGCGAAATGGAATCATATCAGTGATTTTTTTAAAAAGGAAATGTAACT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44125182 282 -  99891981 ----CCTGAGAGGAATGTAAACTGCAGTAAGTTAGCAGAAGCAATCTGTAAAGTTTTTACATTGTTT--GTTGTAAAATGCAG--CTTTGGTTTCTCCATCACTAAATTTTTCTATCCCTCATTGC-TTTTTC-TTTGA-CTGTGATAGGATACCTCTAGGCAAATCTGTATTCCCGAGACAGAGTGCCCTTTTGGTTAGCTATAAGTACACTCAAT---GGTAGGCTGAAATATTAGTTTTTATCTACGGTGAAATTGAATCATATCAGTTATTTTTTT-AAAAGGAAATTTAACT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124546551 282 - 198365852 ----CCTGAGAGGAATGTAAACTGTAGTAAGTTAGCTGAAGCAATCTGTAAAGTTCTTACATTGTTT--GTTGTAAAATGCAG--TGTTGCTGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTAGGCAAATCCATATTCCCGAGACTGAGTGCCCTGTGGGTTAGCTATAAGTACACTCAGT---GGTAGGTTGAAGTATTAGTTTTTATCTATGGCGAAATGGAATCACATCAGTGATTTTTTTT-AATGGAAATTTAACT
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124997648 283 - 192294377 ----CCTGAGAGGAATGTAAACTGTAGTAAGTTAGCTGAAGCAATCTGTAAAGTTCTTACATTGTTT--GTTGTAAAATGCAG--TGTTGCTGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTAGGCAAATCCATATTCCCGAGACTGAGTGCCCTGTGGGTTAGCTATAAGTACACTCAGT---GGTAGGTTGAAGTATTAGTTTTTATCTATGGCGAAATGGAATCACATCAGTGATTTTTTTTAAATGGAAATTTAACT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262014 283 - 180432695 ----cctgagAGGAATGTAAACTGTAGTAAGTTAGCTG-AGCAATCCGTAAAGTTCTTACGTTGTTT--GTTGTAAAATGCAG--TGTTGCTGTCTCCATCACTAACCTTTTCTATCCCTCATTGCTTCTTTC-TTTGA-CTGCTATAGGATACCTCTAGGCAAATCCGTATTCCCGAGACAGAGTGCCCTGTGGGTTAGCTATAAGTACACTCAGT---GGTAGGTTGAAGTATTAGTTTTTATCTATGGCGAAATGGAATCatatcagtgatttttttaaaatggaaatttaact
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121517919 284 - 127223203 ----CCTGAGAGGAATGTAAACTGTAGTAAGTTAGCTGAAGCAATCCATAAAGTTCTTACATTGTTT--GTTGTAAAATGCAG--CGTTGCTGTCTCCATCACTAACCTCTTCTATCCCTCATTGC-TCTTTCTTTTGA-CTGCGATAGGATACCTCTAGGCAAATCCGTATTCCCGAGATAGAGTGCCCTGTGGGTTAGCTATAAGTACACTCAGT---GGTAGGTTGAGGTATTATTTTTTATCTATGGCGAAATGGAATCGTATCAGTGATTTTTTTAAAATGGAAATTTAACT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20060837 279 + 128169293 ----TCTGAGAGGAATGTAAAATGTAATAAGTTAGTTGTAGGAAT-TGTAAAGTTCCTACA----TT--GTTGTAAAACACAG--CACTGGTGTCTACACAACTACTTTTTTCTGTCTCTCATTGC-TCTTTC-TCTGA-CTGTGATAGGACACCTCTAGGCAAGTCTGTATTCCAGAGACAGAGTGCCCTTTGGGTTAGCTGTGAGTACACTCATTAAGGGTAGGCTGAAATACTAGTTTTTAT-TATGGTGAAATGGAATCATATTAGTGATTTTTTT-AAATGGAAATTTAATT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4084956 290 +  55844845 CTAAGCTGATAGAAATATAAAATGTA-CGAGTTAGTTGAAGGAATCCATAATGCTTCTGTAAAGTTTAAGTTCTACAATACAGGATTTTGATGTCTCCACTACTCACCTTCTATAGCCCTTATTCC-TCTTCA-TTTCAGCTATCATTGGATACGCTTAACAAAATCTACATCCCAGAGACAAAGTGCCCTTTGCTTTACATACGAGTATTCTTCTTAAAGATAGGCTGAATTATTTGGCTTTATCTATGGCAAAAC--AATCATTTTATTAAATTTTT--AAATGGAATTTTAACT
i canFam3.chr18                C 0 I 14651
e gorGor3.chr9                  48967431 659 + 121947112 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=157586.000000
s hg38.chr14_KI270725v1_random    115965 57 +    172810 CTtgctatggtttgaatgcttgccccttcc-aatctcatgttaaaatttgatccccaa
s panTro4.chrUn_GL393527          259954 57 +    341619 CTtgctatggtttcaatgcttgccccttcc-aatctcatgttaaaatttgatccccaa
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5687454 58 +  72422247 CTtgctatggtttgaatgcttgccccttccaaatctcatgttaaaatttgatccccaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44125464 58 -  99891981 CTtgctacggtttgaatgcttgccccttccaaatctcatgttaaaatttgatccccag
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124546833 58 - 198365852 CTtgctatggtttgaaagcttgccccttccaaatctcatgctgaaatttgataccaag
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124997931 58 - 192294377 CTtgctatggtttgaaagcttgccccttccaaatctcatgctgaaatttgataccaag
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262297 58 - 180432695 CTTACTATGGTTTGAAAGCttgccccttccaaatctcatgctgaaatttgacACCAAG
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121518203 58 - 127223203 CTtgctatggtttgaaagcttgccccttccaaatctcatgctgaaatctgataccaag
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20061116 58 + 128169293 TTtgctaccgtttgaatgcttgtcctctccaaatctcatgttaaaatttgatccccaa
i calJac3.chr8                 C 0 I 14649
e gorGor3.chr9                  48967431 659 + 121947112 I
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I

a score=657369.000000
s hg38.chr14_KI270725v1_random    116022 318 +    172810 tgttgcaggtggggcttactggaaggtgtttggtcatggggttggaccttcatgaatggataataccctcccttagAAATCTAAAGCTATCCTCCCTCCTCGGTGCCCTCAGGAATGAGTGTACCattctttattcacctataattcccccacccatcctttttgagatgttaattacatgtatgttacactgctgcatattgtctgacttatcagtgagtttctggctttcttattttagtttaccctttgtcctttagtttgtaaagcttctatttttttctataaattttctgatgtttgggtaaaatccattac
s panTro4.chrUn_GL393527          260011 316 +    341619 ggttgcaggtggggcttactgggaggtgtttggtcatggggttggaccttcgtgaatggataataccctcccttaggAATCTAAAGCTATCCTCCCTCCTCGGTGCCCTCAGGAATGGGTGTACCATTCTTTATTCATCTATAATTCCCCCACCCATCctttttgagatattaattacatgtatgttacactgctgcatattgtctgacgtatcagtgagtttctggctttcttattttagtttaccctttgtcctttagtttgtaaagcttctatttttttctataaattttctgatgttagggtaaaatca--tac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5687512 318 +  72422247 tgttgcaggtggggattactgggaggtgttgggtcatggggttggaccttcatgaatggataataccctcccttaggAATCTCAAGCTATCCTCCCTCTTCGGTGCCCTCAGGAATGAGTGTACCATTCTTTATTCAACTATAATTCCCCCACCCATCctttttgagatattaattacatgtatgttacactgctgcatattgtctcacgtatcagtgagtttctggctttcttattttagtttaccctttgtcctttagtttgtaaagcttctatttttttctataaattttctgaTGTTAGGGTAAaatccattac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44125522 316 -  99891981 tgttgcaggtggggcttactgg-aggtgttgggtcatggggatggaccttcatgaatggataataccctcccttaggAAACTCAAACCATCTTCCCTCCTCGGTGCCCTTAGGAATGAGAGTACCATTCTTTATTCAACTATAATTCCCCCACCCATCctttttgagatatcagttacatgtatgttacactgctgcatattggctcacatatcagtgagtttctggctttcttattttagtttaccctttgtccttcagtttgtaaagcttcta-ttttttctataaattttctgatgttagggtaaaatccattac
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124546891 283 - 198365852 tgttgcaggtagggcttactgggaggtgttgggtcatgggaatggaccctcaggaacggataatacccct-----------------------------------ccctcaggaatgagtgtcccattctTTATTCAACTGTAATTCCCCCACCCAccctttttgagataccagttacatgtatgttacactgctgcatattgtctcatgtatcagtgagtttctggcttttttattttagtttcccctttgtccttcagtttgtaaagcttctatttttgtctataaatcttctgatgttagggtaaaatccattac
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124997989 283 - 192294377 tgttgcaggtagggcttactgggaggtgttgggtcatgggaatggaccctcaggaacggataatacccct-----------------------------------ccctcaggaatgagtgtcccattctTTATTCAACTGTAATTCCCCCACCCAccctttttgagataccagttacatgtatgttacactgctgcatattgtctcatgtatcagtgagtttctggcttttttattttagtttcccctttgtccttcagtttgtaaagcttctatttttgtctataaatcttctgatgttagggtaaaatccattac
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262355 283 - 180432695 TGTTGCAGGTAGGGCTTACTGGGAGGTGTTGGGTCATGGGAATGGACCCTCACGAACGGATAATACCCCT-----------------------------------CCCTCAGGAATGAGTATCCCATTCTTTATTCAACTGTAATTCCCCCACCCACCCTTTTTGAGATACCAGTTACATGTATGTTACACTGCTGCATATTGTCTCGTGTATCAGTGAGTTtctggcttttttattttagtttcccCTTTGTCCTTCAGTTTGTAAAGCTTctatttttgtctataaatcttctgATGTTAGGGTAAAATCCATTAC
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121518261 283 - 127223203 tgttgcaggcagggcttactgggaggtgttgggtcatgggaatggaccctcacgaagggataatacccct-----------------------------------ccctcaggaatgagtgtcccattctTTATTCAACTGTAATTCCCCCACccaccctttttgagataccaattacatgtatgttacactgctgcatattgtctcatgtatcagtgagtttctggctttcttattttagtttcccctttgtccttcagtttgtaaagcttctatttttgtctataaatcttctgatgttagggtaaaatccattac
i chlSab2.chr21                C 0 C 0
e gorGor3.chr9                  48967431 659 + 121947112 I
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                  20061174 14649 + 128169293 I

a score=5584.000000
s hg38.chr14_KI270725v1_random    116340 2 +    172810 tt
s panTro4.chrUn_GL393527          260327 1 +    341619 -t
i panTro4.chrUn_GL393527       C 0 C 0
s gorGor3.chr9                  48968090 2 + 121947112 TT
i gorGor3.chr9                 I 659 I 277
s ponAbe2.chrUn                  5687830 2 +  72422247 tt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44125838 2 -  99891981 tt
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124547174 2 - 198365852 tt
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124998272 2 - 192294377 tt
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262638 2 - 180432695 TT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121518544 2 - 127223203 tt
i chlSab2.chr21                C 0 C 0
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                  20061174 14649 + 128169293 I

a score=183344.000000
s hg38.chr14_KI270725v1_random    116342 80 +    172810 attctatctcatggaatttttatttctaatatttatttttcatctatacatgtcacatttttcattttataacttctatt
s panTro4.chrUn_GL393527          260328 79 +    341619 attctatctcatggaatttttatttcaaatattta-gatagatctatacatgtcacgtttttcattttataacttctatt
i panTro4.chrUn_GL393527       C 0 I 18824
s ponAbe2.chrUn                  5687832 80 +  72422247 attctatctcatggaatttttatttcaaatatttatttttcatctatatatgtcacatttttcattttataacttctatt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44125840 79 -  99891981 actctatctcatggaatttttatttcaaatatttatttttcatctatacacgtcaca-ttttcattttataacttctatt
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124547176 80 - 198365852 attgtatctcatggaatttttatttcaaatatttatttttcatctatacatgtcacacttttcattttataacttctatt
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124998274 80 - 192294377 attgtatctcatggaatttttatttcaaatatttatttttcatctatacatgtcacacttttcattttataacttctatt
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262640 80 - 180432695 ATTTTATCTCatggaatttttatttcaaatatttattttccatctatACATGTcacacttttcattttataacttCTATT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121518546 80 - 127223203 attgtatctcatggaatttttatttcaaatatttatttttcatctatacatgtcacacttttcattttataacttctatt
i chlSab2.chr21                C 0 C 0
e gorGor3.chr9                  48968092 277 + 121947112 I
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                  20061174 14649 + 128169293 I

a score=292157.000000
s hg38.chr14_KI270725v1_random    116422 188 +    172810 ttt---ctatgttcaattttcatttaagtgccttgacatatatatgtatttacctatatgtatttataaaatatgt-ttactttaaggaccttgaaatttccttcttttctgtcatttataaatgacttatttttatcctgttaatatatgtcttaagtatatatatcttacggcttctttgcatgtcaga-g
s ponAbe2.chrUn                  5687912 191 +  72422247 tttctcctatgttcaattttcatttaagtaatttgacatatatatgtatttatctatatgtacttatacaatatat-ttactttaaggaccttgaaaattccttcttctctgtcatttataaatgacttatttttatcatgttaatgtatatcttaataatatat-tcttccggcttctttgcatgtcagagg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44125919 192 -  99891981 tttcttctgtgttcaattttcatttaagtaatttgacatatatatatatttatctatatgtatttataaaatatatattactttaaggaccttgaaaattccttcttctctgtcatttataagtgacttatttttatcctgttaatatatatcttaataatgtatatcttccagcttctttgcatgtcaga-g
i nomLeu3.chr17                C 0 I 1
s rheMac3.chr3                 124547256 158 - 198365852 tttctcctATGTTCAATTTTCATTTAAGTAATTTGACatata----tatttatctatatatctttataaaatatata------------------------------CTCTGTCATTTATAAATGACCTATTTTTATCCTGTTAATATATATCTTAATAATATatatcttcctgcttctttgcatgtcaga-a
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124998354 188 - 192294377 tttctcctATGTTCAATTTTCATTTAAGTAATTTGACatata----tatttatctatatatctttataaaatatatatTACTTTAAGGACCTTGAAAATTCCTTCTTCTCTGTCATTTATAAATGACCTATTTTTATCCTGTTAATATATATCTTAATAATATatatcttcctgcttctttgcatgtcaga-a
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262720 188 - 180432695 TTTCTCCTATGTTCAACTTTCATTTAAGTAATTtgacatata----tatttatctatatatctttataaaatatatattactttaagGACCTTGAAAATTCCTTCTTCTCTGTCATTTATAAATGACGTATTTTTATCCTGTTAATATATATCTTAATAATATATatcttcctgcttctttgcatgtcAGA-A
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121518626 188 - 127223203 tttctcctatgttcaactttcatttaagtaatttgacatata----tatttatctatatatctttataaaatatatattactttaaggaccttgaaaattccttcttctctgtcatttataaatgacctatttttatcctgttaatatatatcttaataatatatatcttcctgcttctttgcatgtcaga-a
i chlSab2.chr21                C 0 C 0
e gorGor3.chr9                  48968092 277 + 121947112 I
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                  20061174 14649 + 128169293 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=-4701.000000
s hg38.chr14_KI270725v1_random    116610 1 +    172810 -t
s gorGor3.chr9                  48968369 1 + 121947112 -t
i gorGor3.chr9                 I 277 N 0
s ponAbe2.chrUn                  5688103 1 +  72422247 -t
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr3                 124547414 1 - 198365852 a-
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 124998542 1 - 192294377 a-
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262908 1 - 180432695 A-
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121518814 1 - 127223203 a-
i chlSab2.chr21                C 0 C 0
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                  20061174 14649 + 128169293 I
e nomLeu3.chr17                 44126111 1 -  99891981 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=434117.000000
s hg38.chr14_KI270725v1_random    116611 262 +    172810 tttttttggggggggttttttgatgttatgctattgactatctagattttattggctacctttgaacaatgttgtggcaggcagttcagtaacttcaggatgagtatttgtctgttgttgttttaaatcttctctttaaactttgtggagttagtctagagccatctgtaatttggagctatatgagcactgtcactagggcatgaaactccagtggtctttactgaatatcctagagatacagaggtgattcccttctctg
s ponAbe2.chrUn                  5688104 262 +  72422247 ttttttttttttgggtactttgatgttatgctattgaatatctagattttattggctacctttgaacaatgttgtggcaggcagttcagtaacttcaggatgagtatttttctgttgttgttttaaatcttctctttaaactttgttgagttagtctagagccatctgtaatttggagctaaatgagcactgtcactagggcatgaacctccagtggtctttactggatatcctggaggtacagaggggattcccttctctg
i ponAbe2.chrUn                C 0 I 5371
s nomLeu3.chr17                 44126112 261 -  99891981 tttctttggggggcatattttgatgttatggtattgaatatgtagattttattggctacctttgaacaatgttgtggcaggcagttcagtaacttcaagatgagtatttttctgttgttgttttaaatcttctctttaaactttgttgagttagtctagagccatctgtaatttgcagctaaatgagcactatcactagggcatgaa-ctccagtggcctttactgaatatcctggatgtacagagaggattcccttctctt
i nomLeu3.chr17                I 1 C 0
s rheMac3.chr3                 124547415 255 - 198365852 ---tttt----ggggtattttgatgttatgctatccaatatctggattttattggctacctttgaacagtgttgtggcaggcagttcagtaactttaggatgagtattttcctgttgctgttttaaatcttctctttaaacattgttgagttattctagagccatctgtaatttagagctaactgagcactattactagggcatgaacctccagtggtctttactgaatatcttggatgttcagaggggatttccttctctg
i rheMac3.chr3                 C 0 I 15233
s macFas5.chr3                 124998543 255 - 192294377 ---tttt----ggggtattttgatgttatgctattcaatatctggattttattggctacctttgaacagtgttgtggcaggcagttcagtaactttaggatgagtattttcctgttgctgttttaaatcttctctttaaacattgttgagttattctagagccatctgtaatttagagctaactgagcactattactagggcatgaacctcccgtggtctttactgaatatcttggatgttcagaggggatttccttctctg
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122262909 255 - 180432695 ---TTTT----GGGGTATTTTGATGTTGTGCTATTTAATATCTGGATTTTATTGGCTACCTTTGAACAGTGTTGTGGCAGGCAGTTCAGTAACTTTAGGATGAGTATTTTCCTGTTGCTGTTTTAAATCTTCTCTTTAAACTTTGTTGAGTTATTCTAGAACCATCTGTAAATTAGAGCTAAATGAGCACTATCACTAGGGCATGAACCTCCAGTGGTCTTTACTGAATATCTTGGATGTTCAGAGGGGATTCCCTTCTCTG
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121518815 255 - 127223203 ---tttt----ggggtattttgatgttatgctattcaatatctggattttattggctacctttgaacagtgtcgtggcaggcagttcagtaactttaggatgaatattttcctgttgctgttttaaatcttctctttaaactttcttgagttattctagagccatctgtaatttagagctaaatgagcactatccctagggcatgaacctccagtggtctttactgaatatcttggatgttcagaggggattcccttctctg
i chlSab2.chr21                C 0 I 13537
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                  20061174 14649 + 128169293 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=1627.000000
s hg38.chr14_KI270725v1_random    116873 5 +    172810 attag
s nomLeu3.chr17                 44126373 5 -  99891981 gctag
i nomLeu3.chr17                C 0 I 11875
s macFas5.chr3                 124998798 5 - 192294377 gctgg
i macFas5.chr3                 C 0 I 15361
s papAnu2.chr3                 122263164 5 - 180432695 GCTGG
i papAnu2.chr3                 C 0 I 13448
e canFam3.chr18                  4085246 14651 +  55844845 I
e rheMac3.chr3                 124547670 15233 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                  20061174 14649 + 128169293 I
e chlSab2.chr21                121519070 13537 - 127223203 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=3611.000000
s hg38.chr14_KI270725v1_random    116878 16 +    172810 aaTTTGGAAGATAAAG
s macFas5.chr3                  67280217 16 + 192294377 AATTTGGAATATAAAT
i macFas5.chr3                 n 15361 I 1
s calJac3.chr8                 108093474 16 - 128169293 AATTTGGAAGATAAAT
i calJac3.chr8                 n 14649 C 0
e canFam3.chr18                  4085246 14651 +  55844845 I
e rheMac3.chr3                 124547670 15233 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e chlSab2.chr21                121519070 13537 - 127223203 I
e papAnu2.chr3                 122263169 13448 - 180432695 I
e nomLeu3.chr17                 44126378 11875 -  99891981 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=128315.000000
s hg38.chr14_KI270725v1_random    116894 175 +    172810 AGAAAAGAGAAAAATACAAAGCTATGCATAAACACGTGCATTAAAGTGAATTTTATGTG-----------GGCTTTTTCATGAAAATGTTCCTAAGGTATTTTAtttttttattgtggtaaaatacacataacataaaatgtactctgttaaccattttaagtgtacagttcagtggtactaaata
s rheMac3.chr3                  73803068 170 + 198365852 AGAAAAGAGAAAAATAGAAAGCTATGCATAAACATATGCATTAAAATGAATTTTATGTG-----------AACTCTTTCATGAAAATGTTCCTAAGGTATTTTAtttttttattgtcgtaaaatac-----acataaaatgtactctgtttaccattttaagtatatagttcagtggtactaaata
i rheMac3.chr3                 n 15233 C 0
s macFas5.chr3                  67280234 170 + 192294377 AGAAAAGAGAAAAATAGAAAGCTATGCATAAACATATGCATTAAAATGAATTTTATGTG-----------AACTCTTTCATGAAAATGTTCCTAAGGTATTTTAtttttttattgtcgtaaaatac-----acataaaatgtactctgtttaccattttaagtatatagttcagtggtactaaata
i macFas5.chr3                 I 1 C 0
s chlSab2.chr21                  5690619 170 + 127223203 AGAAAAGAGAAAAATAGAAAGCTATGCATAAACATATGCATTAAAATGAATTTTATGTG-----------AACTCTTTCATGAAAATGTTCCTAAGGTGTTTTAtttttttattgtcataaaatgc-----acataaaatgtactctgtttaccattttaagtatatagttcagtggtactaaata
i chlSab2.chr21                n 13537 C 0
s calJac3.chr8                 108093490 182 - 128169293 ATAAAAGAGAAAAATAGAAATTTATGCATAAACATAAGCATTAAAATAAATTTTATGTGGTCAGTCCTGTGTCTCTTTGGTGAAAATGTTTCTAAGGTGTTTTA-ttttttattgtggtaaaatacacataacataaaatgta--ctgttaatcatttt-agtgtacagttcagaggtactaaata
i calJac3.chr8                 C 0 I 38
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e papAnu2.chr3                 122263169 13448 - 180432695 I
e nomLeu3.chr17                 44126378 11875 -  99891981 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=15555.000000
s hg38.chr14_KI270725v1_random    117069 29 +    172810 gagtcataacattgtgcagccgtccctac
s rheMac3.chr3                  73803238 29 + 198365852 tagtcataacattgtgcagccatccctac
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                  67280404 29 + 192294377 tagtcataacattgtgcagccatccctac
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                  5690789 29 + 127223203 tagtcataacattgtgcagccatccctac
i chlSab2.chr21                C 0 C 0
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e calJac3.chr8                 108093672 38 - 128169293 I
e papAnu2.chr3                 122263169 13448 - 180432695 I
e nomLeu3.chr17                 44126378 11875 -  99891981 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=87086.000000
s hg38.chr14_KI270725v1_random    117098 108 +    172810 catccatctccataattcgtttcatcttgtaaaactgaaactctatacccattaaaaaatacttccccatttcttcctccccccagcttctggcaaccatcattgtac
s rheMac3.chr3                  73803267 108 + 198365852 catccatctccataacttgtttcatattgtaaaactgaaactctgtacccattaaacaatatttcctcatttcttcctccccccagcttctggcaaccatcattgtac
i rheMac3.chr3                 C 0 n 0
s macFas5.chr3                  67280433 108 + 192294377 catccatccccataacttgtttcatattgtaaaactgaaactctgtacccattaaacaatatttcctcatttcttcctccccccagcttctggcaaccatcattgtac
i macFas5.chr3                 C 0 C 0
s chlSab2.chr21                  5690818 108 + 127223203 catccatctccataactcgtttcatattgtaaaactgaaactctgtacccattaaacaatatttcctcatttcttcctccccccagcttctggcaaccatcattgtac
i chlSab2.chr21                C 0 n 0
s calJac3.chr8                 108093710 107 - 128169293 tacccatctctataactcgtttcatcttgtaaaaccgaaactctgtactcattaaacaatagttccccatttcttcctttcctcagc-tctggcctccatcattttac
i calJac3.chr8                 I 38 C 0
e canFam3.chr18                  4085246 14651 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e papAnu2.chr3                 122263169 13448 - 180432695 I
e nomLeu3.chr17                 44126378 11875 -  99891981 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=960.000000
s hg38.chr14_KI270725v1_random    117206 6 +    172810 catctc
s macFas5.chr3                  67280541 6 + 192294377 tgtctc
i macFas5.chr3                 C 0 n 0
s calJac3.chr8                 108093817 6 - 128169293 tacctc
i calJac3.chr8                 C 0 n 0
e canFam3.chr18                  4085246 14651 +  55844845 I
e rheMac3.chr3                  73803375 0 + 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e chlSab2.chr21                  5690926 0 + 127223203 I
e papAnu2.chr3                 122263169 13448 - 180432695 I
e nomLeu3.chr17                 44126378 11875 -  99891981 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=2120.000000
s hg38.chr14_KI270725v1_random    117212 2 +    172810 tg
s nomLeu3.chr17                 44138253 2 -  99891981 TA
i nomLeu3.chr17                I 11875 C 0
s macFas5.chr3                 125014164 2 - 192294377 TA
i macFas5.chr3                 I 15361 C 0
s papAnu2.chr3                 122276617 2 - 180432695 TA
i papAnu2.chr3                 I 13448 C 0
s calJac3.chr8                  20075823 2 + 128169293 TA
i calJac3.chr8                 I 14649 C 0
s canFam3.chr18                  4099897 2 +  55844845 TA
i canFam3.chr18                I 14651 C 0
e rheMac3.chr3                  73803375 0 + 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e chlSab2.chr21                  5690926 0 + 127223203 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I
e panTro4.chrUn_GL393527          260407 18824 +    341619 I

a score=202626.000000
s hg38.chr14_KI270725v1_random    117214 105 +    172810 tAATGCTAATCAAGCATAGTGGCTGTGTTTCTTGCTTCCTCTAGTCCGCAGGTAGAATACAAATGTAATAAACTACTT----ATTCATGTCACATCTATTTATTTTCTG
s panTro4.chrUn_GL393527          279231 105 +    341619 TAATGCTAATCAAGCATAGTGGCTGTGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATACAAATGTAATAAACTACTC----ATTAATGTCACATCTATTTATTTTCTG
i panTro4.chrUn_GL393527       I 18824 C 0
s nomLeu3.chr17                 44138255 103 -  99891981 TAATGCTAATCAAGCACAGTGGC--TGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATACAAACGTAATAAACTATTT----ATTAATGTTACATCTATTTATTTTCTG
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125014166  96 - 192294377 TAATGCTAATCAAGCAGAGTGGCTATGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATAGAAATGTAATAAAC----T----ATTAACGTTACATCTATTTATT-----
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122276619 105 - 180432695 TAATGCTAATCAAGCAGAGTGGCTATGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATAGAAATGTAATAAACTATTT----ATTAACGTtacatctatttattttctt
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121532607 105 - 127223203 TAATGCTAATCAAGCAGAGTGGCTATGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATAGAAATGTAATAAACTATTT----ATTAACGTTACATCTATTTATTTTCTC
i chlSab2.chr21                I 13537 C 0
s calJac3.chr8                  20075825 105 + 128169293 TAATGCTAATCAAGCGGAGTGGCTGTATTTCTTGCTTCCTCTAGTTTGCAGGTAGCGAACAAATGTAATAAACTATTT----ATTAATGTTACATCTATTTATTTTCTG
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4099899 107 +  55844845 TAATCCCAGTAAAGCACAGTGGCTGTGTATCTGGCTTCATCC--TCAGTAGATACTGTGCAAATGTAATACACTATTTATTAATTAATATTACATCTATCTATTTCCTG
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                  73803375   0 + 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=3041582.000000
s hg38.chr14_KI270725v1_random    117319 1196 +    172810 CCTTATACCAAGCTTGTGGGATTCTCTTAAATACAACATTTTTATACT-----TACACCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGGGGAAATTGAGCCTCTGTAAGGTGGAGTAACTTCCTAAGATATAAAACTCAGCATTGAAATCTGTATACTTCAATATCCTGCGCTCTTCTCATTTGTCTTTACTATCTTTTATGTATGTGTTAGATGTCCAATAAATTCTCTTT-TTTAAACTGAATTTAAGCCATGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTCCCTTTCATTTATGATCCTGTTCATGAAAAAGAGAAATTCTTTCATTGTGCTAGAAGCTTAAAATAAGGAAAATGCCACTTTCTACATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCATGAGACATACAAAACAAGTGG----GAAAGAAATCTAGTATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATGATTCCCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCCAAAAATGCTTCCTGCTAAAACATAAGCTCAGTCTGGCAGGAAATGCAGCTCACTTCATAAAGATTAATTGGTAGCTAAT-TTTGCATGCTGTTCTCTGAACTTGAGTGAAACCTGTCCATCAGGCATACAGGGCATGATGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAACCTTCAAAGATGACCTGCCTTTTCTTTCAAATTCTTGATATCTTAATCAAGATATCATTAATTCATCTCTCTTTGCCCTTGGTTCAACATTGTGCTATACCAAAAC-TCATATAAAACAATGATCTAATATAATAAAAATGGCA-TTTTTCTTTGATGTAGATGCAAGCT-AACTGGCATTTTTACAATCCACATATTTCCTTTGTCAA--TTTTTCATTCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAGGGATGAAGGTGTTTCTGTGTTCATTGTGATCCAAAC-TATTTTTAGACCTAGGGGCGTTTGTAAAACAATTTGTGCCAGCTGACCAAGGATCACTGTGGCAGAAAGCAGCAAATTTGCATAAGATGTCACTGCCTCATAAGTTGGCTTTGAAAACTAGGGGCTTA
s panTro4.chrUn_GL393527          279336 1193 +    341619 CCTTATACCAAGCTTGTGGGATTCTCTTAAATACAACATTTTTATACT-----TACACCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGGGGAAATTGAGTCTCTGTAAGGTGCGGTAACTTCCTAAGATACAAAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTCTCATTTGTCTTTACTGCCTTTTACGTATGTGTTAGATGTTCAATAAATTCTCTTT-TTTAAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATTGGACATTCTTCATCCCTTTCATTTATGATGCAGTTCATGAAAAAGAGAAATTCTTTCATTGTGCTAGAAGCTTAAAATAATGAAAATGCCACTTTCTACATTAAACAGAAACTGAAGGGAATCAAGATGAATTGGATGAGACATAGAAAACAAGTGG----GAAATAAATCTAGTATAATTTCCCCTTTGTGTACCTTTGTTATTTAGCATTTTAGAAAATGTTTCCCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCCAAAAATGCTTCCTGCT-AAACATAAGCTCAGTCTGGCTAGAAATTAAGCTCACTTCATAAAAATTAGTTGGTAGCTAATCTTTGCATGCTCTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAACCTTCAAAGATGACCTTCCTTTTCTTTCAAATTCTTGATATCTT----AAGACTTCATTAATTCATATTTCTTTGCCCTTGGTTCAACATTGTGCTATACCAAAAC-TCATGTAAAACAATGATCTATTGTAATAAAAATGGCATTTTTTCTTTTATGTAGATGCAAGCT-ATCTGGCATTTTTACAATCAACATACTTCCGTTGTCAA--TTTTTCATTGTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAGGGATGAAGGTGTTTCTGTGTTCATTGTGATCCAAAC-ATTTTTTAGACCTAGAGGTGTTTGTAAAACAATTTGTGCCAGCTGACCAAGGACCACTGTGGCAGAAAGCAGCAAACTTGCATAAGATGTCACTGCCTCATCAGTTGGCTTTGAAAACTAGGGGCTTA
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44138358 1193 -  99891981 CCTTATACCAAGCTTGTGGGGTTATCTTAAATATAACATTTTTATACT-----TACACCTATGCAATACCCATTAGCATTGCCTTCCTAAATCAGAGGAAATTGAGCCTCTGTAAGGTGGAGTATCTTAGTAAGATACAGAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTCCATTTGTCTTTACTGCCTTTTATGTATGTGTTAGATGTTCAATAAATTCTCTTT-TTTAAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTTAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATCCAGTTCATGAAAAAGAGAAATTCTTTCATTGTGTTAGAAGCTTAAAATAATGAAAATACTACTTTCTACATTAAACAGAAACTGAAAGGAATCAAGGTGAATTGCAAGAGACATAGAAAACAAGTGG----GAAAGAAATCTAATACAATTTGCCCTTTGTATACCTTTATTATTTAGTGTTTGAGTAAATGTTT-CCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAATAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCTAAAAATACTTTCTGCTAAAACATAAGCTCAGTCTGTCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCATGCTCTTCTCTGAACCTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAACCTTCAAATATGACCTTCCTTTTCTTTTAAATTCTTGATATATT----AAGACTTAATTAATTCATCTCTCTTTGCCCTTGGTTCAACGTTGTGCTATACCAAAAC-TCATGTAAAACAATGATCTAAGGTAACAAAAATGGCA-TTTTTCTTTCACGTAGATGCAAGCTAAACTGGCATTTTTACAATCAACATAGTTTCTTTATCAA--TTTTTCATTCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAGGGAAGAAAGTGTGTCTGTGTTCACTGTGATCCAAAC-TTTTGTTAGACCTAGTGGTGTTTGTAAAACAATTTGTGCCAGCTGACCAAGGACCACTGTGGCAGAAAGCAGCAAACTTGCATAAGGTGTCACTGCCTCATAAGTTGGCTTTGAAAACTAGGGGCTTA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124562903 1181 - 198365852 CCTTATATGAAGCTTGTGGGGTTATCTTAAATATAACATTTTTATACT-----TACAGCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGAGGGAATTGAGCCTCTGTAAGGTGGAGTGAGTAACT----TACAGAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTTCATTTGTCTTTACTGCCTTTTATGTATGTGTTAGACGTTCAATAAATTCTCCTT-TTCAAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATTCAGTTCATGAAAAAGAGAAATTCTTTCATTGTCCTAGAAGCTTAAAATAATGAAAATACCACTTTCTCCATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCACGAGATACAGAAAACAAATGG----GAAAGAAATCTAATATAACTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATATTTCCCCCACATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCTAAAAATGCTTCCTGCTAAAACGTAAGCTCAGTCTGGCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCAAGCTGTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAAACTTCAAAGATGACCTTCCTTTTCTTTTAAATTCTTGATATCGT----AAGACTTAATTAATTCATCTGTCTTTACCCTTGGTTCAACGTTGTTCTATACCAAAAC-TCATGTAAAACAATGATCTAATGTAATAAAAATGGCA--TTTTCTTTCATGTAGATGCAAGCT-AACTGACATTTTTACAATCAACATATTTCCTTTGTCAG---TTTTCATTCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAAGGATGAGGGTGTGTCTGTGTTCATTGTGATCCAAACTTTTTTTTAGACCTAGTGGTGTTTTTAAAACAATTTG-------TGACCAAGGACCACTGTGCCAGAAAGCAGCAAACTTGCATAAGATGTCACTGCCTCACAAGCTGGCTTCGAAAACTAGGGGCTTA
i rheMac3.chr3                 I 15233 C 0
s macFas5.chr3                 125014262 1181 - 192294377 CCTTATATGAAGCTTGTGGGGTTATCTTAAATATAACATTTTTATACT-----TACAGCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGAGGGAATTGAGCCTCTGTAAGGTGGAGTGAGTAACT----TACAGAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTTCATTTGTCTTTACTGCCTTTTATGTATGTGTTAGACGTTCAATAAATTCTCCTT-TTCAAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATTCAGTTCATGAAAAAGAGAAATTCTTTCATTGTCCTAGAAGCTTAAAATAATGAAAATACCACTTTCTCCATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCACGAGATACAGAAAACAAATGG----GAAAGAAATCTAATATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATATTTCCCCCACATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCTAAAAATGCTTCCTGCTAAAACGTAAGCTCAGTCTGGCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCAAGCTGTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAAACTTCAAAGATGACCTTCCTTTTCTTTTAAATTCTTGATATCGT----AAGACTTAATTAATTCATCTGTCTTTACCCTTGGTTCAACGTTGTTCTATACCAAAAC-TCATGTAAAACAATGATCTAATGTAATAAAAATGGCA--TTTTCTTTCATGTAGATGCAAGCT-AACTGAcatttttacaatcaacatatttcctttgtcag---ttttcattCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAAGGATGAGGGTGTGTCTGTGTTCATTGTGATCCAAACTTTTTTTTAGACCTAGTGGTGTTTTTAAAACAATTTG-------TGACCAAGGACCACTGTGCCAGAAAGCAGCAAACTTGCATAAGATGTCACTGCCTCACAAGCTGGCTTCGAAAACTAGGGGCTTA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122276724 1188 - 180432695 ccttatatgAAGCTTGTGGGGTTATCTTAACTATAACATTTTTATACT-----TACAGCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGAGGGAATTGAGCCTCTGTAAGGTGGAGTAACTTACT----TACAGAACTCAGCATTAAAGTCTGTGTACTTCAATATCCTGCCctcttttcatttgtctttacTGCCTTTTATGTATGTGTTAGACGTTcaataaattctcttt-ttcaAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATTCAGTtcatgaaaaagagaaattcttTCATTGTCCTAGAagcttaaaataatgaaaataccatTTTCTCCATTAAACAGACACTGAAGGGAATCAAGGTGAATTGCACGAGATACAGAAAACAAATGG----GAAAGAAATCTAATATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATATTTCCCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCTAAAAATGCTTCCTGCTAAAACGTAAGCTCAGTCTGGCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCAAGCTGTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAAACTTTAAAGAtgaccttccttttcttttaaatttttagtatcaT----AAGACTTAATTAATTCATCTGTCTTTACCCTTGGTTCAACATTGTTCTATACCAAAAC-TCATGTAAAACAATGAtctaatgtaataaaaatgtca--ttttctttcatgCAGATGCAAGCT-AACTGACATTTTTACAATcaacatatttcctttgtcag---tttTCATTCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAAGGATGAGGGTGTGTCTGTGCCCATTGTGATCCAAACttttttttAGACCTAGtggtgtttttaaaacaatttgtgcCAGCTGACCAAGGACCACTGTGCCAGAAAGCAGCAAACTTGCATAAGATGTCACTGCCTCACAAGCTGGCTTTGAAAACTAGGGGCTTA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121532712 1234 - 127223203 CCTTATATGAAGCTTGTGGGGTTATCTTAAATATAACATTTTTATACT-----TACAGCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGAGGGAATTGAGTCTCTGTAAGGTGGAGTAACTTACT----TACAGAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTTCATTTGTCTTTACTGCCTTTTATGTATGTGTTAGACTTTCAATAAATTCTCTTT-TTCAAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATTCAGTTCATGAAAAAGAGAAATTCTTTCATTGTCCTAGAAGCTTAAAATAATGAAAATACCACTTTCTCCATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCACGAGATACAGAAAACAAATGG----GAAAGAAATCTAATATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATATTTCCCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTGTAACATAAACATTTCCTAAAAATGCTTCCTGCTAAAATGTAAGCTCAGTCTGGTTAGAAATTAAGTTCCATTCATAAAGATTAATTGGTAGCTAATCTTTGCAAGCTGTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGATGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAAACTTTAAAGATGACCTTCCTTTTCTTTTAAATTCTTGATATCGT----AAGACTTAATTAATTCATCTGTCTTTACCCTTGGTTCAACGTTGTTCTATACCAAAAC-TCATGTAAAACAATGATCTAATGTAATAAAAATAGCA--TTTTCTTTCGTGTAGATGCAAGCT-AACTGACATTTTTACAATCAACGTATTTCCTTTGTCAG---TTTTCATTCTGTATTGGAAGTAATTGATAGGTATTTCTGAAAGGATGAGATAGGTATTTATGAAAGGATGAGATAGGTATTTCTGAAAGGATGAGGGTGTGTCTGTGTTCATTGTGATCCAAACTTTTTTTTCGACCTAGTGGTGTTTTTAAAACAATTTGTGCCAGCTGACCAAGGACCACTGTGCCAGAAAGCAGCAAACTTGCGTAAGATGTCACTGCCTCACAAGCTGGCTTTGAAAACTAAGGGCTTA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20075930 1178 + 128169293 CCTTGTACAGAGCTTGCAGGGTTATCTTAACTATAACATTTTTATACT-----TATACCTTTGCAGT-CCCCTTAGCATCGCCTTCCTGAATCAGAGGAAATCCAGCCTCTGTAAGGTGGAGTAACTGACTGTGATACAGAACTCCACACTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTTCATTTGTCTTTACTGCCTTTCATGTGTGTGTTTAATGTTCAATACATTCTTTTT-TTAAAAATGAATTTAAGCCATGGAGTGGTGTTTTGTTGAACAATAAATATGATATAGGAAACTCTTCCAACCTTTCATTTATGATCCAGTTCATAAAACAAAGAAATTCTTTTATTGTGCTAGAAGCTTAAAATAATGAAAATGCCACTTTCTACATTAAACGGAAACTGAAGGGAATCAAGGTGAATTGCCTGAGCTATAGAAAACGAGTGG----GAAAGAAGTCGAATATAATTTGCCCTTTGTGTACCTTTATTATTTAGCTTTTGAGTAAATATTTCCCACAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTACAATAAATTTTTCCTAAAAATGCTTCCTGCAGAAACGAAAGCTGAGTCATGCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCATGCTATTCTCTGAACTTGAGTGAGAGCTGTCCATAAGGCATACAGGGAATGATGGAAAAGATGACAAAAGAAGATGAATGCTATGTCACTAACCTTCAGAGATGACCTCCCTTTACTTTTCAATTCCTGATATGTT----AAGACTTAATTATTTCATCTCTCTCTGCCCTTGGTTCAAAGTTATGCTATACCAAAAC-TCATGTAAAATAATTATCTACTATAATAAAAATGGCA--TTT----------AGATGCAAGCT-AACTGGCATTATTACAATCAACATCGTTCTTTTGTCAG--TTTTTCATGTTGTATTGGATGTAATT----------------------------------------------GATAGGTATTTATAAAGGGATGTAGGTGTATCTGCATCCATTGTGATCCAAAA---TTTTTGGACCTAGTGATGTTTTTAAAATAATTTGTGCCAGCTGACCAAGGACCACTGTGCCAGAAAGCAGC-AACTTGCATGAGATGTCACTGTCTCATAAGATGGCTTTGAAAACTAGAGGTCTA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4100006 1133 +  55844845 GCTTTTACTAATCTT-TGTAGTTATCTTAA-TATCAAA-TTTTATATTTATAATACACCTGTATAAC-CCCATTAGCATCCCCATCTTACTTTGAAGGAATTTTAGCCTCCACAGGGCAAAGTAACTTAGA--GAGAGAGAACTCAGCATTAAATTCTATATAACTCAAGATCCTCCCTTCTTTCCATTT-TCTTTATTGCCTGTAGTGTATGTGCTATATGTTCAATAAATTCTCTTTCTTTAAATTGAATTTAACCTGAGAAGCAATGTTTTGTTGAGCAATAAATATGATATAAGACACTCTTCCTACTTTTCAGTTATGATACAGTTCATGG---GGAAAAATTATTTCATTATGCTGGAAACTTAAAATAATGAACATGATACTTTCCATGTTAACTAAAAACTGAAGAAAATCAAGTTGAATTACATAAGGTAAAACAAGCAAGTGGAAAAGGAAGGAATTGAATATAACATGTCCTTTGCACTCC-TTATT-TTTAGCTTTCGAATAAATGTTTT---------TCTTCCAGTGGACTACCTTAATCCATGTCCGAAATATATACTTCTGTGTCTTCTCTATTTAAGACATGTTCACTCTAATACAAACATTTCCT-AAAATGAATCTTTCAAATGGATGAACTGAGTCTACTTAG-AATGAAGTCCCCTCCATAATGCTTAATTGATAGCTAGTCATTATA---TGTTCTGTGAGCTTGAGTGACAGCTG-----------TACATGGAATGATGGAAAATGTGACAACAGATGATAAATGCTACATCAATAACCTTCAAAGTTGACCTTCCTTCTCTTTTAAATTTCTCATATTTT----AGGATTTAATTTCTTCATCTCTCTTTGCTTTTGTTCCAAAATTATGATGTACTAAAACATCATGCAACACAATTATAGACTGTAAAAAAA--GACA-TTTTTCTTTCACATAGAATCAAGCT-AACTGGATTTTCAATAGCCCATATA-TTCCTTTGTAAGTTTTTTTCATTTTCAATTGGAAATCTTT----------------------------------------------AATA-ATATTTCTGAAGGGATACAGATATGCCTGTGCTCATTATGA---AAAC-AATTCCTG-----------------AAAACAATCTGT-------------------CCATGCTAGAAAACAGTAAGCCTACATAAGGTGCTGCTGTCTTATAAATTGACTTTGAAAATTATAGGCTTA
i canFam3.chr18                C 0 I 1236
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=1931279.000000
s hg38.chr14_KI270725v1_random    118515 871 +    172810 CTCTATAGTCTTATGAATCAAAGGCATTGATAGatgtagtataagattacaatcatactttccttttgacagtcacattataaagcatgatgtattgcaattaatctcaattagctgatcacaattaaaattaataatgtttattattgctgataaacaatcatgactctcctgttctcaaatgtgcaaataattcttgtaattttaatacaaatttgcatattattattaattgatttaatctcattgcatttggttcatggatccaatttattaaaatATTGATAATGGGATAATGATTtgtttccccacttcatgtacactaaaa---acaattcttacaatggtctgcaaccccatcatgatctgcctcatgttaaccgccaaaattcttttatatcttcacccttgatcttaccagtggtcctggccacctcactgtcctctggacatgccaacacgctgctgccttatgaccaagactctagttaatttcttggcttggaaagatagccctccatatatccattgatcagctcattcaacttcctcaagtctttactgaaacttcacattctcgatgaggcctattcagtatttcaaactgcctcccagctgcaactttccaaaaccccttactcttctGTGTATtttttaaaggatttattgagataaaatttacatagtgtagagtgcacacattaa-tgtctacaagtcagtgacttttagtatatgcacagataagtggagccatcatcacaatgaattttagagcattttcatcacttcaaaaagaaaccccaccttctctagctgttaacatcctatacactcatcccctactcaatcctaagcaaccacaaatctgttttct
s panTro4.chrUn_GL393527          280529 873 +    341619 TTCTATAGTCGTATGAATCAAAGACATTGATAGATGTAGTATAAGATTACAATCATATTTTCCTTTGGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAATTAGCTGATGACAATTAAAATTAATA--GTTTATTATTGCTGATAAACAATCATGACTCTCCTGTTCTCAAATGTGCAAGGAATTCTTGTAATTTTAATACAAATTTGCATATTACTACTAATTGATTTAATCTCATTGTATTTGGTTCGTGGATCCAATTTATTAAAATATTGATAATGGGGTAATGATTtgtctccccatttcatttacactaaaagacacaattcgtacaatggtctggaagcccatcatgatctgccgcatgttaaccgccaaaattcttttatatcttcacccttgaccttaccagtggccctggccacctcactgtcctctggacatgccaacatgctgctgtcttatgaccaagactctagttaatttcttggctttgaaagatagccctccatatacccattgatcagctcattcaacttcctcaagtctctactgaaacctcacattctcgatgaaaccttttcagtatttcaaactgcctcccagctgcaacattccaaaaccccttagtcttctgtatAtttttgaaaggatttattgagataatatttacatactgtagaatgctcatattaattgtctacaagtcaatggcttttagtatatacacagataagtggagctatcatcacaatgaattttagagcattttcatcacttcaaaaagaaacctcaccttctctagctgttaacctcctattcactcatcccttactcaatcctaagcaaccacaaatctgttttct
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44139551 870 -  99891981 CTCTATAGTCTTATGAATCAAAAACATTGATAGatgtagtgtaagattacaatcatattttccttttgacagtcacattataaagcatgatgtattgcaattaatcacaattagctgatcacaattaa----aataatgtttattattgctgataaacaatcatgattctcttgttctgaaatgtgctagtaattcttgtaattttaattcaaatttgcatattattactaattgatttaatctcattggatttggttcatggatccaatttattaaaatattgataatgggataatgatttgtctccccatttcatttacactaaaagccacaattcttacaatggtctgcaagcccatcatgatctgccccgtgttaaccaccgaaattcttttgtatcttcacccttgatcttaccagtggccctggccacctcactgtcctctgggcatgccaacatgctgctgccttatgaccaaggctctagttaatttcttggcttggaaagatagccctccatatatccattgatcagcttattcaacttcctcaagtctttactgaaacctcacatactcaatgagacctattcagtatttcaaactgcctcccacctacaacactccaaaaccccttactcttctGTGTAtttttgaaaggatttagtgagatataatttacatagtgtagagtgcacacattaa-tgtgtacaagtcagtggcttttagtatatgcacagataagtggagccatcatcacaatgaattttagagcatttccatcacttcaaaaagaaaccccaccttctttagctgttaacctcctatacgcccattccctactcaatcctaagcaatcacaaatctgttttct
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124564084 868 - 198365852 CTCTATATTCTTATGAATCAAAAACATTGACAGATGTAATATAAGATTACAATCATATTTTCTTTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAATTAGCTGAACACAAATAAAATTAATAATGTTTATTattgctgataaacaatcatgactctcctgttctgaaacgtgcaagtaattcttgtaattttaatacaaatttgtatattgttactaattcatttaatctcactggatttggttcatggatccaatttattaaaatattgataatgggataatgatttgtctccccatttcatttacactaaaagccacaattcttacaacactctgcaagcccatcatgatctgactcatgctaactgccaaaattcctttatatcttcacccttaatcttaccagtggtcctggccacttcactgtcctctggacatgccaacatgctgctgccttatgacccagactcttgttaatttcttggtctggaaagatagccctccatatatccatcgatcagctcattcaacttcctcaagtctttactgaaatctcacattcttaaggagacctattcagtatttcaaactgcctcccagctgcaacactccA------CTTACTCTTCTGTGTAtttttgaaaggatttattgagatataatttacatagcatagagtgcacacattaa-tgtgtacaagtcaatggcttttagtatatgcacagataagtgaagccatcatcacaatgaattttagagcattttcatcacttcaaaaagaaaccccaccttctttaactgttcaactcctatgcacccatcccctactcaatcctaagcaaccccaactctgttttcc
i rheMac3.chr3                 C 0 I 1
s macFas5.chr3                 125015443 867 - 192294377 CTCTATATTCTTATGAATCAAAAACATTGACAGATGTAATATAAGATTACAATCATATTTTCTTTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAATTAGCTGAACACAAATAAAATTAATAATGTTTATTATTGCTGATAAACAATCATGACTCTCCTGTTCTGAAACGTGCAAGTAATTCTTGTAATTTTAATACAAATTTGTATATTGTTACTAATTCATTTAATCTCACTGGATTTGGTTCATGGAT-CAATTTATTAAAATATTGATAATGGGATAATGATTtgtctccccatttcatttacactaaaagccacaattcttacaacactctgcaagcccatcatgatctgactcatgctaactgccaaaattcctttatatcttcacccttaatcttaccagtggtcctggccacttcactgtcctctggacatgccaacatgctgctgccttatgacccagactcttgttaatttcttggtctggaaagatagccctccatatatccatcgatcagctcattcaacttcctcaagtctttactgaaatctcacattcttaaggagacctattcagtatttcaaactgcctcccagctgcaacactcca------cttactcttctgtgtatttttGAAAGGAtttattgagatataatttacatagcatagagtgcacacattaa-tgtgtgcaagtcaatggcttttagtatatgcacagataagtgaagccatcatcacaatgaattttagagcattttcatcacttcaaaaagaaaccccaccttctttaactgttcaactcctatgcacccatcccctactcaatcctaagcaaccccaactctgttttcc
i macFas5.chr3                 C 0 I 1
s papAnu2.chr3                 122277912 867 - 180432695 CTCTATATTCTTATGAATCAAAAACATTGACAGATGTAATATAAGATTACAATCATATTTTCCCTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAACTAGCTgatcacaaataaaattaataatgtttattattgCTGATAAACAATCATGACTCTCCTGTTCTGAAATGTGCAAGTAATTCTTgtaattttaatacaaatttgTATATTGttactaattcatttaatctcACTGGATTTGGTTCATGGAtccaatttattaaaatattgataatggGATAATGATTTGTCTCCCCATTTCATTTACACTAAAAGCCACAATTTTTACAACATTCTGCAAGCCCATCATGATCTGACTCATGCTAACTGCCAAAATTCCTTTATATCTTCACCCTTAATCTTACCAGTGGTCCTGGCTACTTCACTGTCCTCTGGACATGCCAACATGCTGCTGCCTTATGACCTAGACTCTTGTTAATTTCTTGGTGTGGAAAGACAGCCTTCCGTATATCAATCGATCAGCTCATTCAACTTCCTCAAGTCTTTACTGAAATTTCACATTCTCAA-GAGACCTATTCAGTATTTCAAACTGCCTCCCAGCTGCAACACTCCA------CTTACTCTTCTGTATATTTTTGAAaggatttattgagatataatttacatagcaTGGAGTGCACACATTAA-TGTGTACAAGtcaatggcttttagtatatgCACAGATAAGTGAAGCCATCATCACAAtgaattttagagcattttcatcacttcaaaaaGAAACTCCACCTTCTTTAACTGTTAAACTCCTATGCACCCATCCCCTACTCAATCCTAAGCAACCCCAACTCTGTTTTCC
i papAnu2.chr3                 C 0 I 1
s chlSab2.chr21                121533946 867 - 127223203 CTCTATATTCTTATGAATCAAAAACATTGACAGATGTAATATAAGATTACAATCATATATTCTTTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAATTAGCTGAACACAAATAAAATTAATAATGTTTATTATTGCTGATAAACAATCATGACTCTCCTGTTCTGAAACGTGCAAGTAATTCTTGTAATTTTAATACAAATTTGTATATTGTTACTAATTCATTTAATCTCACTGGATTTGGTTCATGGATCCAATTTATTAAAATATTGATAATGGGATAATGATTtgtctccccatttcatttacactaaaagccacaattcttacaacactctgcaagcccatcatgatctgactcatgctaactgccaaaattcctttatatcttcacccttaatcttaccagtggtcctggccacttcactgtcctctggacatgccaacatgctgctgccttatgacccagactcttgttaatttcttggtctggaaagacagccctccgtatatccatcgatcagctcattcaacttcctcaagtctttactgaaagttcacattctcaa-gagacctattcagtatttcaaactgcctcccagctgcaacactcca------cttactcttctgtatatttttGAAAGGAtttattgagatataatttacatagcatagagtgcacacattaa-tgtgtacaagtcaatggcttttagtatatgcacagataagtgaagccatcatcacaacgaattttagagcattttcatcacttcaaaaagaaactccaccttctttgactgttaaactcctatgcacccatcccctgctcaatcctaagcaaccccaactctgttttcc
i chlSab2.chr21                C 0 I 1
s calJac3.chr8                  20077108 860 + 128169293 CTCTGTATTCTTAGGAATCAAAAACATTGactgatgtagcataagattacaatcatattttccttctgacagtcacattataaagcatgatatactgcaattaatctcaattagctgatcacaattaaaattaataatgtttatcattgctgat----aatcatgactctcttgtcctgaaatgcgcaattaattcttatacttttaatacaaatttgtatattattactaattaatttaatctcattggatttagttcattgttccaatttactaaaatATTGATAATAGGAAAATTATTtgtctcctcatttcatttacactaaaagccatcattcctacaatggtatgcaagccc-tcatggtctgtctcatgttaagtgccaaaa--cttttatatcttcacccttgatcttacctgtggttctggcctcctcattgttctctggatatgccaacatcttgctgccttatgatccagactttagttaatttcttggcttggaatgataggccttcatatatccattgatcagctcattcaacttcctcaagtctttactgaaacctcacattctcagtgagacctattcagtatttcaaactgcctcccaggtgcaacactccaaaactccttactctgctGTGTAttttt-aacaaacttattacgatattatttacat--cacacagttcacacattag-agtgtacaagtcaacggtttttagtgtatgtacagataagtgcagccatgatcacaatgaattttagaacattttcatcacgtcagaaagaaacctca---tgttaaactgttaaccttccatgcaccc-tcacctactcaatcctaagcaaccacaggtctgttttct
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4101139 1236 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=-3583.000000
s hg38.chr14_KI270725v1_random    119386 1 +    172810 -t
s panTro4.chrUn_GL393527          281402 1 +    341619 -g
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44140421 1 -  99891981 -g
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124564953 1 - 198365852 -t
i rheMac3.chr3                 I 1 C 0
s macFas5.chr3                 125016311 1 - 192294377 -t
i macFas5.chr3                 I 1 C 0
s papAnu2.chr3                 122278780 1 - 180432695 -T
i papAnu2.chr3                 I 1 C 0
s chlSab2.chr21                121534814 1 - 127223203 -t
i chlSab2.chr21                I 1 C 0
s rhiRox1.KN300005v1             3635975 1 +   4311341 -t
i rhiRox1.KN300005v1           N 0 I 4167
s calJac3.chr8                  20077968 1 + 128169293 g-
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4101139 1236 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=4717231.000000
s hg38.chr14_KI270725v1_random    119387 2193 +    172810 tctctatagactttactattc----tgttttcatctaaatagaatcatacaataggtggccttttctgcctg-g-----cttctttcagttggcataatgctatcaaggttcatgtacgtattggtactttatttctttttataaccgtataacattcaatttcatggatataacattttatttatccaataatatttttattgacatttgagttgtgttcagcctttggctattttaaatactgctgctaaaaatacttgtgtacaatttgtgtttgaacacctctttccaataatctgggtgtatacctaggaataaatttctgggtcatatgacaattcaatgtttaatat-atttagaagccatcaaattattttacaaagtggccagttctagccatagagtatctaactgtggttttgatttgtagttgcctgatgagtgatgctattgagta-tctttttatgggattattggccgttcgtgtatcttcttgggaaacacatctattcctatcatttatcagttttgagttgggata----tttgttactgagttaaaacaatttttctatattcaagatacatatatataca------gacatatagatacgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttgcttggt-tgtcctttgaaacaccaatgtctttaatttttaacaaattttaaatatctaatttttattttgttgctcatgtttttgatgttacagctatttctttgctagatccaaaatcgtgaagattttcccatatgttttattctagctcttgcatgtgtgtctttaattcatttgagttaata-tttttgtatgctttggggtaagggttccaatttattattttgcaagtggtgatccacgtgtaagttgttgaacc--agtttgttcaaagactgtctcttcctcattgaattgcacatggcaccactgtaagaatccattgaccatagacacatagttttatatatggactctcaattctcttccatcaatctatatatttttccttcatcagtattttgttgtcttgattactgatactt-tgcagtaaggtttggagcatgggggtgtgaattatcctaatatgttttcttttttcaagattattttggctattttgagtcccttacaattccatgtgtattttagaatcagcttgtcagtttctagacagaagtctgttggaatacttgcagggatttcatcaaatcagtagttcaaattgtaaagtaatacagtattaaatcttccaa--ttcatggctgtaagatgtttgctaattactta----ttctttaaacaataatttttaattttcagagt-aaaatcctgtatcacattt-tccaaattaatt----atta-----tttctttttatgatgctattttaaattgaagtgttttcttaatttcattttggggttttcattgtagatgtgtgcaattgatttttgtacatttatcttgtatgctgtaatattgctgaaataatttactagttctatc----gttcagtggattccttaacattttctatatacaagaat--gttattttcaaataaagttttatttcttcctgttcaatatgggtgattctta--tttttttagttgccgatttgccctgcataaaatctttagtacagtattgactagaagagttcaaat--tatatatcctattcttatctctgaccatagcgggaaagcatccttt-----accattaagttgcatgcttgctgttggcttttcacaggtgccatgtatctggtgtagaaagttc---tctattcctggttcattgag------tttttatttt----tatttttaatcattaaagcatttggattttgttaaatgtgttttccgaatctatcgagatgatcatgcaattctcgtttcttattctatggataagatgtattaccttaatggattttgggctgttaaaccaacctgggaatacttgtataaatttcactttgtcatagtgtataattcttttatatgttgctagttctgatttgttagtattttttaaggaattttgcgtttatact------------tatagtag-ttttatttttctatgatatttggactaatttttgtatcaaggtaacactggccccaaagagtaaattgggaagtgaatatt--tc--tttttaaaaaagctagtcaagaattaatatcaattattcAACACTAACAAAT------
s panTro4.chrUn_GL393527          281403 2174 +    341619 tctctgcagattttcctattc----tattttcatctaaatagaatcatacaataggtggccttttgtgcctg-g-----cttctttcagttggcataatgctatcaaggttcatatgcgtattggtactttatttctttttatatctgtataacattcaatttcatggatataacattttgtttatccaataatatttttattgacatttgagttgtgttcagcctttggctattttaaatactgctgctaaaaatacttgtgtacaatttgtgtttgaacacccctttccaatactctgggtgtatacctgggaataaatttctgggtcatatgacaattctatgtttaatat-atttagaagccatcaacctattttccaaagtgacCAGTTCTAGCCATAGAgtatctaactgtggttttgatttgtagttgcctgacgagtgatgctgttgagta-tctttttatgggattattgaccattcgtgtatcttcttgggatacacatctattcctatcatttatcagttttgagttgggata----tttgttactgagttaaaacaatttttgtatattcaagatacatatatatgca------gacatatagctatgcgtttttcaaatattttctcacaatttttgagctgccttttgacttgcttggt-tgtcgtttgaaacac-----------------aagaaattttaaataactgatttttattttgttgctcatgtttttggtgttacagctatttctttgctagatccaaaatcctgaagattttcccatatgctttattctagctcttgcatgtatgtctttaattcacttgagttaata-tttttgtatgctttggggtaagggttccaatttattattttgcaagtggcgatccacgtgtacatcgttgaccc--agtttgttcaaagactgtctcttcctcattgaattgcacatggcaccactgtaagaatccattgactatagatacatagttttatatatggactctcaattctcttccatcaatctatatatttttccttcatcagtattgtgttgtcttgattactgatgctt-tgctgtaaggtttggagcacggggatgtgaattatcctaatatgttttcttttttcaagactattttggctattttgagtcccttacaatcccatgtgtattttagaatcagcttatcagtttctagacagaagtctgttgggatacttgcagggattacgtcaaatctgtagttcaacttgtaatgtgctacaatattaaatcttccaa--ttcatgggagtaagatgtttgctaattatttagatcttctttaaacaataatttttaattttcagagt-aaaatcttgtatcacattt-tccaaattaatt----atta-----tttctttttttgatgctattt----------tgttttcttaatttcattttggggttttcattgtagatgtgtgcaattgatttttgtacatttatcttgtatgctgtaatattgctgaaataatttactagttctatc----tttcagtggattccttaaaattttctatatacaagaat--gttattttcaaataaagttttatttcttcctgttcaatatggatgactcttatttttttttagttgccgatttgctctgcataaaatcttcagcacagtgttgactagaagaggtcaaag--tatatatcctattcttatctctgaccatagcgggaaagcatccttt-----accattaggttgtatgcttgctgttggcttttcacaggtgccatgtatctggtgtagaaagttc---tctattcctggttcattgag------tttttatttt----tatttttaatcattaaagcgtttggattttgttaaatgtcttttctgaatctatcgacatgatcatgcaattcttctttcttattctatggataagatgtattaccttaatggattttgggctgttaaaccaacctgagattactagtataaatttcactttgtcatagtgtataattcttttatatgttactagatctgatttgttagtagtttttaaggaattttgcatttatact------------tatagtag-ttttatttttctatgctatttggactaatttttgtatcaaggtaacactggccccacagaataaattgggaagtgaatgtttctc--tttttaaaaaagtcagtcaataattaatatcaattAGTCAATACTAACAAAT------
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44140422 2213 -  99891981 tctctatagattttcctattc----tattttcatgtaaatagaatcatataataggtggccttttgttcctg-g-----cttctttcagttagcataatgctatcaaggttcatatatgtattggtactttatttctttttataac--tataacattcagtttcatggatataacattttgtttatccagtaatatttttattgacgtttgagttgtgttcagcctttggctattttaaatactgctgctaaaaatacttgtgtacaatttgtgtttgaacacctctttccaataatctgggtgtatgcctaggaataaatttctaggtcatacgacaattctatgtttaatat-atttagaagccatcaaactatttgccaaagtggccagttctagccattgagtatctaactgtggttttgatttgtaattgcctgatgagtgatgctactgagta-tctttttatgggattattgaccgttcgtgtatcttcttgggaaacatatctattcctatcctttatcagttttaagttgggata----tttgttactgagttaaaacaatttttctatgttcaagatacatatatataca------gacatatagatatgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttgcttggt-tgtcctttgacacaccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttggtgttatagctatttccttgctagatccaaaatcctgaagattttcctatatgctttattctagctcttgcatgtatgtctttaattcatttgagttaata-tttttgcatgctttggagtaagcgtttgaatttattattttgcaagtggtgattcacatgtacattgtggacccaaagtttgttcaaagactgtctcttcctcatttaattgcacatggcaccactgtaagaatccattgactatagatacatagttttatatatggactctcaattctcttccatcaatctatatatttttccttcatcagtatcatgttgtcttgattattgatgctt-tgcagtaaggtttggaggacgcgggtgtgaattatcctaatatattttcttttttcaagattattctggctattttgagtcccttacaataccatgtgtatttcagtaacagcttgtcagtttctagacagaagtctgttgggatacttgcagggatttcatcaaatctgtagttcaaattgtaaatta-tacaatattaaatcttccaa--ttaatggctgtaagatgtttgctaattatttagatcttctttaaacaataatttttaattttcagagt-aaaatattgtattacattt-tccagattaattattaatta-----tttcattttttgatgctattgtaaattgaagtgttttcttaatttcattttggggttttcattgtagatgtgtgcaactgatttttgtatatttatcttgtatgctgtaatattgctgaaataatttactagttctatc----attcggtggattccttaaaattttctatatacaagaatacgttatttgcaaataaagttttatttcttcctgttcaataagggcaactctta--tttctttacttgctgatttgtcctgcataaaatatttggtacaatgttgactagaagaggtaaaat--tatataccctattcttacctctgaccataacaggaaagtatcctttctttcaccattaagttgaatgttt-ctgttggcttttcacaggtgccatgaatctggtgtagaaagttctcttctattcctggttcattgagtttttatttttatttt----tatttttaatcattaaagcatttggattttgttaaatgccttttctgaatctattgagatgatcatgcaattcttgtttcttattctatggataagatgtattaccgtaatggattttgggctgttaaaccaccctgggattactagtataaatctcactttgtcatagtgtataattcttttatatattgctagatttgatttgttagcattttttaaggaattttgcatttatact------------tacagtagtttttatttttctatgatatttggactaatttttgtatcaaggtaacactggctctacagaataaattgggaaatgaatatt--tc--tctttaaaaaat---gtcaagaattaatatcaattattcAATACTAACAAAT------
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124564954 2226 - 198365852 tctctatagattttcctattctgaatattttcatgtaaatagaatcatataataggtggccttttgtgccta-ggtggccttccttcagttagcataatgctatcaaggttcatatatgtattggtactttgtttatttttataattgtataacattcaatttcatggatacaacatgttgtttatccaataatatttttattgacatttgagttgtgttcagtctttggctattttaaatactgctgctaaaaatacttgtgtgcaatttgtgtttgaacacctgtttccgataatctgggtatataccgaggaatacatttctaggtcatatgacaattctatgtttaatat-atttagaagctatcaaactattttccaaagtggcCAGTTCTAACCATTGAgtatctaattgtggtattgatttgtagttgcttgatgagtaatgctattgagca-tttttttatgggattattgactgttcgtgtatcttcttgggaaatatatctattcatatcgtttatcagttttaagttgggata----tttgttactaagttaaaacaatttttctatattcaagatacatatatatatgta----gacatatagatatgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttctttggt-tgtcctttgaagcaccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttggtgttatagctatttctttgctagatccaaaatcatgaagattttcccacatgctttcttctagctcttgcatgtatgcctttaattcatttgagttaata-tttttgtatgctttggggtaagggttcaaatttattattttgtgagtggtgatctatatgtaggttgttgacccaaagtttgttcaaagactatctcttcctcattgaattgcacatggcaccactgtaagaatccattgactatagatacgtagttttatatatggactctcaattctcttccatcaatccatatgtttttccttcatcagtatcgtgttgtcttgattattgatgctt-tgcagtaaggtttggagtatgggggtgtgaattattctaatatgttttcttttttcaagattattttggctattttgagtcccttacaattccatgtgtattttagaatcagtttgttagtttctagacagaagtctgataggacacttgcagggatttcatcaaatctgtagttcaaattgtcaagtactacaatattaaatcttccaa--ttaatggctgtaagatgtttgctaattatttagatcttctttaaacaattctttttaattttcagagt-aaaatattgtattacatttttccaaattaatt----at-------ttcatttttttgatgctattgtaaattgaagtgttttcttaatttcattttgacgttttcattgtagatgcgtgcaattgatttttgtatatttattttgtatgctgtaatattgctgaaataatttactagttctatcacttattcaggggattccttaacattttctataaacaagaatatgctatttgcaaacaaagttttatttctttctgttcaatatggacaactctta--tttctttacttgccgatttgtcctgcataaaacctttagtacaatattgattagaagaggtaaaat--tgtatattctattcttgtgtctgaccacagcgggaaagtatcctttatttcaccattaagctgaatgtttgctcttggcttttcacaagtgccatgtatctggcataggaagtactcttctattcttggttcattgag------------tttt----tatttttaattatt-aagcatttggattttgttaaatgctttttctgaatcttttgtgatgatcatgaaattcttgtttcttattctatggataagatatgttacatttatggattttgggttgttcaaccaacctgggatgactagtataaatctcactttgtcatagtgtataattcttttatatgttgctagatttgatttgctagcatttttaaagaacatttgcatttatact-----tacgagatatagtag-ttttatttttctatgatatttggactaatttttgtatcaaggtaatgctgaccccacagaacaaagtaggaagtgaatatttctc-ttttttaaaaaaattagtcaataattagtatcaattattcAATATTAACAAAT------
i rheMac3.chr3                 C 0 I 3
s macFas5.chr3                 125016312 2229 - 192294377 tctctatagattttcctattctgaatattttcatgtaaatagaatcatataataggtggccttttgtgccta-ggtggccttccttcagttagcataatgctatcaaggttcatatatgtattggtactttgtttctttttataattgtataacattcaatttcatggatacaacatgttgtttatccaataatatttttattaacatttgagttgtgttcagtctttggctattttaaatactgctgctaaaaatacttgtgtgcaatttgtgtttgaacacctgtttccgataatctgggtatataccgaggaatacatttctaggtcatatgacaattctatgtttaatat-atttagaagctatcaaactattttccaaagtggccagttctaaccattgagtatctaattgtggtactgatttgtagttgcttgatgagtaatgctactgagca-tttttttatgggattattgactgttcgtgtatcttcttgggaaacatatctattcatatcgtttatcagttttaagttgggata----tttgttactaagttaaaacaatttttctatattcaagatacatatatatatatatgtcgacatatagatatgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttctttggt-tgtcctttgaagcaccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttggtgttatagctatttctttgctagatccaaaatcatgaagattttcccacatgctttcttctagctcttgcatgtatgcctttaattcatttgagttaata-tttttgtatgctttggggtaagggttcaaatttattattttgcgagtggtgatccacatgtaggttgttgacccaaagtttgttcaaagactatctcttcctcattgaattgcacatggcaccactgtaagaatccattgactatagatacgtagttttatatatgaactctcaattctcttccatcaatccatatatttttccttcatcaatatcgtgttgtcttgattattgatgctt-tgcagtaaggtttggagtatgggggtgtgaattattctaatatgttttcttttttcaagattattttggctattttgagtcccttacaattccatgtgtattttagaatcagtttgttagtttctagacagaagtctgataggatacttgcagggatttcatcaaatctgtagttcaaattgtcaagtactacaatattaaatcttccaa--ttaatggctgtaagatgtttgctaattatttagatcttctttaaacaattctttttaattttcagagt-aaaatattgtattacatttttccaaattaatt----at-------ttcattttattgatgctattgtaaattgaagtgttttcttaatttcattttgacgttttccttgtagatgcgtgcaattgatttttgtatatttattttgtatgctgtaatattgctgaaataatttactagttctatcacttattcaggggattccttaacattttctataaacaagaatatgctatttgcaaacaaagttttatttctttctgttcaatatggacaactctta--tttctttacttgccgatttgtcctgcataaaacctttagtagaatattgattagaagaggtaaaat--tgtatattctattcttgtgtctgaccacagcgggaaagtatcctttatttcaccattaagctgaatgtttgctcttggcttttcacaagtgccatgtatctggcgtaggaagtactcttctattcttggttcattgag------------tttt----tatttttaattatt-aagcatttggattttgttaaatgctttttctgaatcttttgtgatgatcatgcaattcttgtttcttattctatggataagatatgttacatttatggattttgggttgttcaaccaacctgggatgactagtataaatctcactttgtcatagtgtataattcttttatatgttgctagatttgatttgctagcatttttaaagaacatttgcatttatact-----tacgagatat-gtag-ttttatttttctatgatatttggactaatttttgtatcaaggtaatgctgaccccacagaacaaagtaggaagtgaatatttctc-ttttttaaaaaaattagtcaataattagtatcaattattcAATATTAACAAAT------
i macFas5.chr3                 C 0 I 3
s papAnu2.chr3                 122278781 2227 - 180432695 TCTCTATAGATTttcctattctgaatattttcatgtaaatagATTCATATAATAGGTGGCCTTTTGTGCCTAGGGTGGCCTTCCTTCAGTTAGCATAATGCTATCAAGGTTCATATATGTATtggtactttgtttctttttataattgtATAACATTCAATTTCATGGACACAACATGTTGTTTAtccaataatatttttattgacatttGAGTTGTGTTCAGTCTTTGGCTATTTTAAATACTGCTGCTAAAAATACTTGTGTACAATTTGTGTTTGAACACCTGTTTCCGATAATCTGGGTATATACCGAGGAATACATTTCTAGTTCATATGACAATtctatgtttaatat-atttagaagctatcaaactattttccaaagtggccagTTCTAGCCATTGAGTATctaactgtggttttgatttgtagttGCCTGATGAGTAATGCTATTGAGCA-TTTTTCTATGGTATTATTGACTGTTTGTGTATCTTCTTGGGAAACATATCTGTTCCTATCGTTTATCAGTTTTAAGTTGGGATA----TTTGTTACtaagttaaaacaatttttctatattcaagatacatatatatatgta----gacataTAGATATGTGTTTTTCAAATCTCTTCTCATAATTTTTGAGCTGCCTTTTGACTTGTTTGGT-TGTCCTTTGAAGCAccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttGGTGTTATAGCTATTTCTTTGCTAGATCCAAAATCATGAAGATTTTCCCACATGCTTTCTTCAAGCTCTTGCATGTATGCCTTTAATTCAtttgagttaata-tttttgtatgctttggGGCAAGggttcaaatttattattttgcgAGTGGTGATCCACATGTAGGTTGTTGACCCAAAGTTTGTTCAAAGACTATCTCTTCCTCATTGAATTGCACATGGCACCACTGTGAGAATCCATTGACTATAGATACGTAGTTTTATATATGGAATCTCAATTCTCTTCCATCAACCCATATATCTTTCCTTCATCAATATCGTGTTGTCTTGATTATTGATGCTT-TGCAGTAAGGTTTGGAGTATGGGGGTGTGAATTATcctaatatgttttcttttttcaagattattttggctattttgagtCCCTTACAATTCCTTGtgtattttagaatcagtttgttagTTTCTAGACAGAAGTCTGATAGGATACTTGCAGGGATTTCATCAAATCTGTAGTTCAAATTGTCAAGTActacaatattaaatcttccaa--ttAATGGCTGTAAGATGTTTGCtaattatttagatcttctttaaacaattctttttaattttcagagt-aaaatattgtattacatttctccaaattaatt----at-------ttcatttttttgatgctattgtaaattgaagtgttttcttaatttcattttgacGTTTTCATTGTAGATGtgtgcaattgatttttgtatatttattttgtatgctGTAATATTGCTGAAATAATTTACTAGTTCTATCACTTATTCAGGggatttcttaacattttctataAACAAGAATATGCTATTTgcaaacaaagttttatttctttctgttcaaTATGGACAACTCTTA--TTTCTTTACTTGCCAATTTGTCCTGCATAAAACCTTTAGTACAATATTGACTAGAAGAGGTAAAAT--TGTatattctatttttgtctctGACCACAGCGGGAAAGTATCCTTTATTTCACCATTAAGCTGAATGTTTGCTCTTGGCTTTTCACAAGTGCCATGTATCTGGCGTAGGAAGTACTCTTCTATTCTTGGttcattgag------------tttt----tatttttaattatt-aagcatttggattttgttaaatgctttttctgaatcttttgTGATGATCATGCAACTCTTGTTTCTTGTTCTATGGATAAGATATGTTACATTTATGGATTTTGGGTTGTTCAACCAACCTGGGATGACTAGTATAAATCTCACTTTGTCATACTGTATAATTCTTTTATGTGTTGCTAGATTTGATTTGCtagcatttttaaagaacatttgcaTTTATACT-----TAGGAgatatagtag-ttttatttttctatgatatttggactaatttttgtatcaagATAATGCTGACCCCACAGAACAAAGTAGGAAgtgaatatttctc-ttttttaaaaaaattagtcaataattagtatcaattattcaatattaacaaat------
i papAnu2.chr3                 C 0 I 3
s chlSab2.chr21                121534815 2221 - 127223203 tctctatagattttcctattctgaatattttcatgtaaatagaatcatataataggtggccttttgtgccta-ggtggccttccttcagttagcataatgttatcaaagttcatatatgtattggtactttgtttctttttataattgtataacattcaatttcatggatacaatatgttgttcatccaataatatttttattgacatttgagttgtgttcagtctttggctattttaaatactgctgctaaaaatacttgtgtacaatttgtgtttgaacacctgtttccgataatctgggtatataccgaggaatacatttctagatcatatgacaattccatgtttaatat-atttagaagctatcaaactattttccaaagtggcCAGTTCTAGCCATTGAgtatctaattgtggttttgatttgtagttgcctgatgagtaatgctattgagcattttttttatgggattattgactgttcgtgtatcttcttgggaaacatatctattcctatcgtttatcagttttaagttgggata----tttgttactaagttaaaacaacttttctatattcaagatacatatatatatgta----gacatatagatatgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttgtttggt-tgtcctttgaagcaccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttggtgttatagctatttctttgctagatccaaaatcatgaagattttcccacatgctttcttctagctcttgcatgtatgcctttaattcatttgagttaata-tttttgtatgctttggggtaagggttcaaatttattattttgcgagtggtgatccacatgtaggttgttgacccaaagtttgttaaaagactatctcttcctcattgaattgcacatggcaccactgtaagaatccattgactatagatacatagttttatatatggactctcaattctcttcaatcaatccatatatttttccttcatcaatatcgtgttatcttgattaatgacgctt-tgcagtaaggtttggagtatgggggtgtgaattatcctaatatgttttcttttttcaagattattttggatattttgagtcccttacaattccatgtgtattttagaatcagtttgttagtttctagacagaagtctgataggatacttgcagggatttcatcaaatctgtagttcaaattgtcaagtattacaatattaaatcttccaa--ttaatggctataagatgtttgctaattatttagatcttctttaaacaattctttttaattttcagagt-aaaatattgtattacatttttccaaattaatt----at-------ttcatttttttgatgctattgtaaattgaagtgttttcttaatttcattttgatgttttcattgtagatgtgtgcaattgatttttgtatatttattttgtatgctgtaatattgctgaaataatttcctagttctgtcacttattcaggagattccttaacattttctataaacaagaatatgctatttgcaaacaaagttttatttctttctgttcaatatggacaactctta--tttctttacttgccgatttgtcctgcataaaacctttagtacaatattgactagaagaggtaaaat--tgtatattctatccttgtctctgaccacagcggggaagtatcctttatttcaccattaagctgaatgtttgctcttggcttttcacaagtaccatgtatctggcgtaggaagtactcttctattcttggttcattgag----------------------tttttaattatt-aagcatttggattttgttaaatgctttttctgaatcttttgtgatgatcatgcaattcttgtttcttattctatggataagatatgttacatttatggattttgggttgttcaaccaacctgggatgactagtataaatctcactttgtcatagtgtataattcttttatatgttgctagatttgatttgctagcatttttaaagaacatttgcatttatact-----tatgagatatagtag-ttttatttttctatgatatttggacgaatttttgtatcaaggtaatgctgaccccacagaacaaagtaggaagtgaatatttctctttttttaaaaaaattagtcaataattagtatcaattattcAATATTAACAAA-------
i chlSab2.chr21                C 0 I 1
s calJac3.chr8                  20077969 2182 + 128169293 tctctgtagattttcttattctgaatattttcatgtaaatagaatcatataataggtggccttttgtgcctg-g-----cttctttcaattagcataatattatctaggtttatatatgtattggtac----tttctttttataactatataatattcaatttcatggatataacattttgtttatccaatcatatttcgattgacatttgagttgtgttcaccctttggctattttcagtactgctgctaaaattacttgtgtacaatttgtgtttgaacatgtgtttccaataatctgggtatatacctaggaataaatttctagatcatatgacaattctatgtttaatataaggtagaatccatcaaactattttccaaagtggACAATTATAGCCATTGAATATACAACtgtggatttgatttgtagttgcatgatgagtaatgctattgagca-tcttttcatggggttactgaccatttgtgtatcttcttgggaaacgtatttatttatatcctttttcagttttaagttaggatgactttttgttactgtgttaaaacaatttttttatattcaagatacatacagatata------g--atatgagtatgtgtttttcaaatattttttcacaatttttgagttgccttttgacttgcttgatgtgtcctt----------atgtctttaattattaagaaaatttaaatatctgatttttattttgttgctcatgtctttggggctatagctgtatctttgctagatccaaagtcatgaaaattttcccacatgctttcttctagctcgtgcatgtgcatctttaattcatttgagtcaatattttttgtatgcattggggtaagagttcaaatttattattttgcaggtggtgatccacatgtacgttgttgacccaacatttattcagagactatcttttcctcattgaattgcacatggcatcactgtaagaatctattgcctatagacacatagttttatatatgggctctaaattctcttccatcaatgtatatatatttccttcatcagtatcatgttgtcttgattactgataatgatgcagtaaggtttgaagtacagaggtatgatttatcctactaagtttttctttttcaagactatgttgttgattttgagtccctgagaagtccatgtgtactttagaatcagcttgtcagttttcagatagaagt------ggattcttgcagggatttcataaaatctgtagttcaaattgtaaagtactgccatcttaacaatatcaatgttcttggctgtaagatttttgctgtttatttagatcttctctaaacaa---tttttaattttcagagtaaaaatattgtattatatat-tccaaattgatt----attaatcattttatttttttgatgctattataaattgaagtgttttcttaatttcattttggggtgttcattgtagatgtgtataattgagttttatatatttatcttgtatgctgtaatattactgaaataatttactagttat-------attcagtgaactccttaaacttttctacatacaagaatatgttatttacaaataaagttttatttcttcctgttcaatacgggcaactctta--ttccctta----cccatttgcccagcataaaatctttagtacagtgttgactagacgaggtaaaagtatatatatcctattcttgtctctgagcata-tgggaaagtatcctttctttcattattaagttgaatgtttgctgttggcttttcacaggtgccatgtacctggtgtacgaagttcctttctattcccggtttattgag------------ttttaaaaaatttttaattattaaagcatttggattttgttaaataccttttctgcatctattgtgatgatcat---------------------------------tattacatttatgaatttggggctgttaaaccaacctgggattactggtataaatctcactttgtcatagtgtgcaattcttttacatgttgctagatttgatttgctaaga-ttttaaaggaattttgcatttatactcatgacatgagacataatag-ttat-tttttttatgatatttggactaatttttgtatcaacgcaatactggccccacagaataaattggtaagtgactatgtctc-tctttttttaaagttagtcaggaattaatattaatAATTCAATGTTAACAACTTATATT
i calJac3.chr8                 C 0 C 0
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e canFam3.chr18                  4101139 1236 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=6552.000000
s hg38.chr14_KI270725v1_random    121580 2 +    172810 AT
s panTro4.chrUn_GL393527          283577 2 +    341619 AT
i panTro4.chrUn_GL393527       C 0 I 6
s panPan1.JH650633                554598 2 - 101998900 AT
i panPan1.JH650633             N 0 N 0
s nomLeu3.chr17                 44142635 2 -  99891981 AT
i nomLeu3.chr17                C 0 I 6
s rheMac3.chr3                 124567183 2 - 198365852 AT
i rheMac3.chr3                 I 3 C 0
s macFas5.chr3                 125018544 2 - 192294377 AT
i macFas5.chr3                 I 3 C 0
s papAnu2.chr3                 122281011 2 - 180432695 at
i papAnu2.chr3                 I 3 C 0
s chlSab2.chr21                121537037 2 - 127223203 AT
i chlSab2.chr21                I 1 C 0
s calJac3.chr8                  20080151 2 + 128169293 AT
i calJac3.chr8                 C 0 C 0
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e canFam3.chr18                  4101139 1236 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=878794.000000
s hg38.chr14_KI270725v1_random    121582 405 +    172810 TATTATAAAttattaatttctctaatttttattttcttccttctgcttgctttaggtttagttttttattctttccagcgccttaatgtggaaggtcatcttatCCCATCCTTTCATTTGTCTTTTCATTCTCTAAATAGTGTCTTTTTAGCAtcagatgagctccc-------caggtcggtagtactccatgtttattgctgcacaacaatgacaggtagtatgtcctgaagacaatggaaacttaacattcaaaat-ctcctagattccac--cttatatgatatgtctctcc----aattggtcctaatttctaccctttctctattataaaccgtaagtacaatggcattcaatgagttctgtgagtctttttagtaaattcttgaaactgagggtgttcaggggaaacccctg
s panTro4.chrUn_GL393527          283585 410 +    341619 TATTATAAAttattaatttcactaatttttattttcttccttctgcttgttttaggtttagtttgctattttttccagtgccttaatgtggaaggtcatcttatCTCATCCTTTCCTTTGTCTTTTCATTTTCGAAATAGTGTCTTTTTAGCAtcaggtgagctccc-------caggttggtagtactccatgtttattgctgtacaacaatgacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcctagattccac--cgtatgtgatatgtctcttcctttgattggtcctaatttctaccctttctctattataaaccatgagtacaatggcattcaatgagttctgtgagtctttctagtaaattcttgaaactgagggtgttctggggaaacccctg
i panTro4.chrUn_GL393527       I 6 C 0
s nomLeu3.chr17                 44142643 410 -  99891981 TATTATAAAttattaatttctctaatttttattttcttccttctgcttgctttaggtttagtttgctattttttccagtgccttaatgtggaaggtcatcttatctcatcctttcatttttcttttcattttctaaATAGTGTCTTCATAGCAtcaggtgagctccc-------catgttggtagtactccatgtttattgctgtacaacaataacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcctagattccac--tttatatgatatgtctcttcctttgattgatcctaatttctaccctttctctattataaaccatgagtacaatagcattcaatgagtcctgtgagtctttctagtaaattcttgaaactgagggtgttctggggaaacccctg
i nomLeu3.chr17                I 6 C 0
s rheMac3.chr3                 124567185 400 - 198365852 TATTATAAAttattaatttctctaattttcattgtcttccttctgcttgctttaggtt---tttgctagtttttccagtaccttaatgtggaaggtcatattatctcagcctttcATTTGTCTTTTCATTTTCTAAATAGTGTCTT-----CAtcaggagggctccc-------caggttggtaatactccatgtttattgctgtacaacaatgacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcttagattccaccacttttatgatatgtctcttccttcgattggtcctaatttctatcctttctctattttaaaccatgaatacaatagcattcaatgagttctgtgagtc----tagtaaattcttgaaactgagggcactctggggaaacccctg
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125018546 400 - 192294377 TATTATAAAttattaatttctctaattttcattgtcttccttctgcttgctttaggtt---tttgctagtttttccagtaccttaatgtggaaggtcatattatctcagcctttcATTTGTCTTTTCATTTTCTAAATAGTGTCTT-----CAtcaggagggctccc-------caggttggtaatactccatgtttattgctgtacaacaatgacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcttagattccaccacttttatgatatgtctcttccttcgattggtcctaatttctatcctttctctattttaaaccatgaatacaatagcattcaatgagttctgtgagtc----tagtaaattcttgaaactgagggcactctggggaaacccctg
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122281013 400 - 180432695 tattataaattattaatttctctaattttcattgtcttccttctgcttgctttaagTT---TTTGCTAGTTTTTCCAGTACCTTAATGTGAAAGGTCATCTTATCTCAGcctttcatttgtcttttcattttctaaatagtGTCTT-----CATCAGGAGGGCTCCC-------CAGGTTGGTAGTACTCCATGTTTATTGCTGTACAACAATGACAGGTAATATGTCCTGAAGACAATGGAAACttaacattcaaaatcctcttaGATTCCACCACTTTTATGATATGTCTCTTCCTTCGATTGGTCCTAATTTCTatcctttctctattttaaacCATGAATACAATAGCATTCAATGAGTTCTGTGAGTC----TAGTAAATTCTTGAAACTGAGGGCGCTCTGGGGAAACCCCTG
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121537039 407 - 127223203 TATTATAAATTATTAATGTctctaattttcattgtcttccttctgcttgctttaggtt---tttgctagtttttccagtaccttaatgtggaaggtcatcttatCTCAGCCTTTCATTTGTCTTTTCATTTTCTAAATAGTGTCTT-----CATCAGGAGGGCTCCCCAGGTTGCAggttggtagtactccatgtttattgctgtacaacaatgacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcctagattccaccacttttatgatatgcctcttcctttgattggtcctaatttctatcctttctctattttaaaccatgaatacaatagcattcaatgagttctgtgagtc----tagtaaattcttgaaactgaaggtgctctggggaaacccctg
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20080153 407 + 128169293 TATTATAAAttattaatttctctaatttt-attttcttccttctccttgctttaggtttagtttgctattttttccaatgtcttaatgcagaagTTCATCTTATCTCAGTGTTTCGTTT-CATTTTCATTTTCTTAATA-TGTCTTAATAGTAtcagatgacctcct-------gtggttggtagtactccatggttattgccatacaacaatgacaggtagtatttcttgaagacaatggaaacttaacattcaaaatcctcctagattccac--cttatatgatatgcctcttcctttgattgctctgaatttctatcctttctctattataaatcataagtacaatagtgttcactgagttctgtaaatctttctagtaaattcttgaaactgagtgtgttctggggaaaccccca
i calJac3.chr8                 C 0 C 0
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e canFam3.chr18                  4101139 1236 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=1569678.000000
s hg38.chr14_KI270725v1_random    121987 657 +    172810 aactggcagttggtgtcagaagtgagaatcgtcttatatggcctcttcctttgaactttgcagctggACGCAAACTCTGCACAATTTGGGCCAGAAGTCTCGTGTTGACTT-TGCAGCTTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTGTTACTCCAAAATTACCATCACG--TTTTTTTTCTCCAAATAATTAAAATTGGGAGAAACAGCCAGCTGAGTCTGTAACTCAACA----GAAACAAGTGATCCATATACCATATACCATATAAGTGGCCATTTCATTTTGCCTTCTTCCACCAAATCTTAGCAACCTTAACCATTGCCATGAGCCA----------------------CTGTA-TGCCTACCAGCTAC-----------AAACAAACAAGTATCTTTTAAAAACATTTCATACTCCCATTTGATAAATTTCCCAGCAAAGAGATGCCTACTTTAACTCTATGCAAGTGGCTCATATGCACTAAGTCTGTAGATATTATTCATGTAGTGTGAGAAAATCATCCCAGCGATGCCAGCACATTCTCCTTCCCATGATCTGCTTAGTTTGCAAACATATTCAGGCCATGGGTGAGAGATTTGTATTTCA------CAGTACAACAGTTTTATGGAGGACATTGAAACTTACATTGAGCATTTTAGTAca
s panTro4.chrUn_GL393527          283995 648 +    341619 aactggcagttggtgacaaaagtgtgaatcatcttatatggcctcttcctttgaactttgcatctggACCCAAACTCTGCACAATTTGGGCTAGAAGTCTCGTGTTGACTT-TGCAGCCTAAATT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTTTTACCCCAAAATTACCATCATG---TTTTTTTCTCCAAATAACTAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACC----GAAACAAGTGAT-------CCATATACCATATAAGTGGCCATTTCATTTTGCCTCCTTCCACCAAATCTTAGCAACCTCAACCGTTGCCATGAACCA----------------------CTGTA-GGCCTACAGTCTAC-----------AAACAAACAAGTATCTTTTAAAGACACTTCATACTCCCATTTGATAAATTTCCCAACAAAGAGATGCTTACTTTAACTCTATGCAAGTGGGTCATATTCGCAAAGTCTGCAGATATTATTCATGTAGTGTGAGAAAATCATCCCAGCGATGCCAGCACATTCTCCTTCCCATGATCTGCTTATTTTGC-AACATATTCAGGCCATGGGTGAGAGATTTGTATTTCA------CAGTTCAGCAATTTTACGGAGGGCATTGAAACTTAGGTTTAGCATTTTAGCACA
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44143053 649 -  99891981 aactggaagttggtgtcagaggtgagaatagtcttatatggcctcttcctttgaactttgcagctggACCCAAACTCTGCACAATTTGGGCCAGAATTCTCGTGTTGACTT-TGCAGCCTGAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTGTTACCCCAAAACTACCATCAAA---TTTTTTTCTCCAAATAACTAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATACCATATAAGTGGCCATTTCATTTTGCCTCCTTCCTCCAAATCTTAGCAACTTCAACCATTGCCAAGAGCCA----------------------CTGTA-GGCCTACCGGCTAC-----------AAACAAACATGTATCTTTTAAAAACACTTCACACTCCCATTTGATAAATTTCCCAGCAAAGAGATGCCTACTTTCACTCTATGCAGGTGGCTCATATTCACGAAGTCTAGAGATATTATTAATGCAGTATGAGAAAACCATCCCAGTGATGCTAGCACATTCTCCTTCCCATGATCTGCTTAGTTTGCAAACATATTCAGGCCATGGGTGAGAGATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTAGATTGAGCATTCTAGTAca
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124567585 651 - 198365852 aattggcagttggtgtcagaagtgagtgtagtcttatatggcctcttcctttgaactttgctgttggACCCAAAGTCTGAACAATTTGGGCCAGAATTCTCATGCAGACTT-TGCAGCCTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTATTACCCCAAAATTACCATCATGATTTTTTTTCCTCCAAATAACTAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATATCGTTTAAGTGGCCATTTCATTTCACCTCCTTCCACCAAATCTTAACAACCTCAACCATTGCCATGAGCCA----------------------CTGTA-GGCTTACCAGCTAC-----------AAACAAACAAGTATGTTTTGAAAACACTTCATACTCCCATTTGATAAATTTCTCAGCAAATAGATGCCTATTTTAACTCTATCCAAGTGGCTCATA-TTGGGAAGTCTGGCGATATTATTAATGCAGTATGAGAAAATCATCCCAGTGATACGAGCACATTCTTCTTCCCATGATCTACTTAGTTTGCAAACATATTCAGGCCATGTGTGAGAAATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTAGATTGAGCATTTTACTAca
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125018946 651 - 192294377 aattggcagttggtgtcagaagtgagtgcagtcttatatggcctcttcctttgaactttgctgttggACCCAAAGTCTGAACAATTTGGGCCAGAATTCTCATGCAGACTT-TGCAGCCTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTATTACCCCAAAATTACCATCATGATGTTTTTTCCTCCAAATAACTAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATATCGTTTAAGTGGCCATTTCATTTCACCTCCTTCCACCAAATCTTAACAACCTCAACCATTGCCATGAGCCA----------------------CTGTA-GGCTTACCAGCTAC-----------AAACAAACAAGTATCTTTTGAAAACACTTCATACTCCCATTTGATAAATTTCTCAGCAAATAGATGCCTATTTTAACTCTATCCAAGTGGCTCATA-TTGGGAAGTCTGGCGATATTATTAATGCAGTGTGAGAAAATCATCCCAGTGATACGAGCACATTCTTCTTCCCATGATCTACTTAGTTTGCAAACATATTCAGGCCATGTGTGAGAAATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTAGATTGAGCATTTTAGTAca
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122281413 650 - 180432695 AACTGGCagttggtgtcagaagtgagTGTAGTCTTATATGGCCTCTTCCTTTGAACTTTGCTGTTGGACCCAAAGTCTGAACAATTTGGGCCAGAATTCTCGTGCAGATTT-TGCAGCCTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCatcaaatattgtatttattacCCCAAAATTACCATCatg--ttttttttctccaaataactAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATATCGTTTAAGTGGCCATTTCATTTCACCTCCTTCCACCAAATCTTAACAACCTCAACCATTGCCATGAGCCA----------------------CTGTA-GGCTTTCCAGCTAC-----------AAACAAACAAGTATCTTTTGAAAACACTTCATACTCCCATTTGATAAATTTCTCAGCAAATAGATGCCTATTTTAACTCTATCCAAGTGGCTCATATTTGGGAAGTCTGGCGATATTATTAATGCAGTGTGAGAAAATCATCCCGGTGATGCGAGCACATTCTTCTTCCCATGATCTACTTAGTTTGCAAACATATTCAGGCCATGTGTGAGAAATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTAGATTGAGCATTTTAGTACA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121537446 650 - 127223203 aactggcagtaggtgtcagaagtgagtgtagtcttatatggcctcttcctttgaactttgctgttggACCCAAAGTCTGAACAATTTGGGCCAGAATTCTCATGCAGACTT-TGCAGCCTAAAGT--------------GTCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTATTACCCCAAAATTACCATCATGA-TTTTTTTTCTCCAAATAACTAACATTGGTAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATATTGTTTAAGTGGCCATTTCATTTCACCTCCTTCCACC-AATCTTAACAACCTCAACCATTGCCATGAGCCA----------------------CTGTA-GGCCTACCAGCTAC-----------AAACAAACAAGTATCTTTTTAAAACACTTCATATTCCCATTTGATAAATTTCTCAGCAAATAGATGCCTATTTTAACTCTATCCAAGTGGCTCATATTTGGGAAGTCTGGCGATATTATTAATGCAGTGTGAGAAAATCATCCCGGTGATGCCAGCACATTCTCCTTCCCATGATCTACTTAGTTTGCAAACATATTCAGGCCATGTGTGAGAAATTTGTATTTCA------CAGTACAATAATTTTATGGAGGGCACTGAAACTTAGATTGAGCATTTTAGTAca
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20080560 643 + 128169293 aactggcagttggtgtcagaagtgagaatagtcttatacggcct----ctttgaactttgcagctggACCCAAACTCTGTGCAATCTGGGCCAGAAGTGTCATGCAGACTT-TGCAGGCCAAAGC--------------ATCTTGCAGTTTGTCTAACCCTCAATAAATTTGCTCTCCTCAAATATTGTATTTATTATCCC-AAATTACCATCATG--CTTTTTTTCTCCAAATAACTAACATTGGGAGAAATAGTCAGCTCAATCTGGAATTGAACA----GAAACAAGTGAT-------CCATATACCCTTTCACTGGAAATTTCATTTTGCCTCCTTCCACCAAATCTTAGCAACCTCAGCAATTGCCATGAGCCA----------------------CTGTA-GGCCTATTGTCTAC-----------AAGCAAACAAGTACCTTTTATAAACACTTCATACTCCCAATTGATAAATTCCCCAGCAGACAAATGCCTGTTTTAATTCTATGCAAGTGGCTCATATTTGCGAAGTCTGGAGATATTACTAATGTGGCATCAGAAAATCATCCCAGTGATGCCAGCACGTTCTCCTTCCCATGACCTGCTTAGTTTGCAAACATATTCAGGTCATGGGTGAGAGATTAGTATTTCA------CAATACAACAATTTT-TGGAGGGCATTGAAACTTAGATTCAGCATT-TAGTAca
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4102375 691 +  55844845 AACTGG--GTGGATGT--GAACTGGGATTGGTCTCATGAGGACTCTTGTCTCTCATTTTGTAGACAGATTCTACTGCCTTGAATTTTGAGTCA-AAGTTTGGGACAGACTTGTCCAGTTTGGAGGTCTGTCTGTACTCAACCTCACAATTTGTTTAACTC----------TGGTTTCAGTAAATCTTTTAAGATTTACTGTCAAAATAGCATCATG----TCTTTTTCCCTGGGAACCAAAGCTGGGAAAATTAGCCAGAAGACTCTGCGAACTGTGAATGTAAAACAGGTGGC-------TTGTATACCACCTCAGTGGCCATTTCCCTTATTTTGCCTCTACCAAACCTTAGTAACCACAATTCCTGCCATCAGACAGAGCTCTTATCAAACTTGCTATCTGGATGGCCAACTGATTATTGACTAAAAGAAAATAAAGATATATATTTTTGCAACACTTCATGCTTCTGTTTGATACATTCCCCATCAAACAGATCCACATCTTAACTCCAT-CGAATGGCCCATATTTGAGAAACTCACAGGTTTTACTAGTGTGATGTAATAAAACTATCCTAGAGAAGTCAATATATTCTCCTTCTCATGATTATCTAGGTTTGCAAACATGTTCAAGCCATATGAGAGGGATTTTTATTTCATACACCCAAAAAAACAGTTTTATGGCAGGCTTTGGTACTTAGATTGAGTAGTTTAATATA
i canFam3.chr18                I 1236 C 0
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=432499.000000
s hg38.chr14_KI270725v1_random    122644 206 +    172810 gccacacatcactgaatgatagggatacgttctaacagatgcatccataggcaatttcatcattttgcaaacatcacagggaatattacaaacacctagattgtacagcctaccac--gtctaggttatatggtatagcctctctctcccaggctacaaacctgtgtactacattactgtactgaatactgcaggcaataagaacaca
s panTro4.chrUn_GL393527          284643 195 +    341619 GTCACA-----------gacagggatacattctaacagatgtatccataggcagttacgtcgttttgcaaaggtcagagagaatattacaaacacctagtttgtacagcctaccac--gtttaggttatatggtgtaacctctctctcctaggctacaaacctgtatactacattactatactgaatactgcaggcaataagaacaca
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44143702 205 -  99891981 atcacacgtcactgaatgataggg-tatgttctacgagatgcatccatagacaatttcatcattttgcaaacatcagagagaatattacaaacacctagattgtacagcctaccac--gtctaggttatatggtatagcctctctctcctaggctacaaacctgcatactacattactgtactgaatactgctggcaattagaacaca
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124568236 208 - 198365852 gtcacacatcgctgaatgatggggatacattctaagagctgcatccataggtaatttcatcactttgcaaacatcagagagaatattacaaacacgtagattgtacagcctaccacatgtctaggtgatatggtatagcctccctctcctaggctacaaacctgtgtactacattactgtactaaatgctgcaggcaattagaataca
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125019597 208 - 192294377 gtcacacatcgctgaatgatggggatacattctaagagctgcatccataggtaatttcatcattttgcaaacatcagagagaatattacaaacacgtagattgtacagcctaccacatgtctaggtgatatggtatagcctccctctcctaggctacaaacctgtgtactacattactgtactaaatgctgcaggcaattagaataca
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122282063 208 - 180432695 GTCACACATCGCTGaatgatggggatatgttctaaGAGCTGCATCcataggcaatttcatcattttgCAAACATCAGAGAGAATATTACAAACACGTAGATTGTACAGTCTACCACATGTCTAGGTGATATGGTATAGCCTCCCTCTCCTAGGCCACAAACCTGTGTACTACATTACTGTACTAAATGCTGCAGGCAATTAGAATACA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121538096 208 - 127223203 gtcacacatcactgaatgatggggatatgttctaagagctgcatccgtaggcaatttcatcatttcgcaaacatcagagagaatattacaaacacctagattgtacagcctaacacatgtctaggtgatgtggtatagcctccctctcctaggctacaaacctgtgtagtacattactgtactaaatgctgcaggcaattagaataca
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20081203 204 + 128169293 ggcacagatcactgaatgatggggatatgttctaagagatgcagccacaggaaatttcagcattttgcaaa---cagagagaatattacaagcacctagattgtacagcccaccacatgtctaggttatgtggtatgccccatcgctcctaggctacaaacctgtg-actacattactctactgaatactgcaggcaattagaacaca
i calJac3.chr8                 C 0 C 0
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e canFam3.chr18                  4103066   0 +  55844845 C
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1               94552 25302 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=2765.000000
s hg38.chr14_KI270725v1_random    122850 3 +    172810 --atg
s panTro4.chrUn_GL393527          284838 3 +    341619 --gtg
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44143907 3 -  99891981 --gtg
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124568444 3 - 198365852 --atg
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125019805 3 - 192294377 --atg
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122282271 3 - 180432695 --ATG
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121538304 3 - 127223203 --atg
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20081407 3 + 128169293 --atg
i calJac3.chr8                 C 0 C 0
s tarSyr2.KE946558v1              119854 3 +   1121937 aaa--
i tarSyr2.KE946558v1           I 25302 I 2065
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e canFam3.chr18                  4103066 0 +  55844845 C
e saiBol1.JH378145              17633427 32819 +  18371965 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=250985.000000
s hg38.chr14_KI270725v1_random    122853 130 +    172810 gtaagaggttatgtatctaaacatacttaaacatagaaaagtatgtaaaaatatgtattataatctcatg-gaccacttttgtatttgtaatccatctttgactga---aatgttattatgcatgacAAGACTC----
s panTro4.chrUn_GL393527          284841 133 +    341619 gtaagagtttatgtatctaaacatacttaaacatagaaaagtatgtaaaaatatgtattataatcacatgagaccacttttgtatatgtaatccatctttgactga---aatgttattatacatgacatgactC--TA
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44143910 135 -  99891981 gtaagagtttatgtatctgaacatatttaaatgtagaaaagtatgtaaaaatatgtattataatctcatgggaccacttttgtatatgtaatccatctttgactga---aatgttattatgcatgacatgacCCTGTA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124568447 128 - 198365852 gtaagagtttatgtatctaaacacatttaa---tagaaaagtatgtaaaactatgtattataatctcatgggatcacttttgtatatgtattctatctt----tga---aatgttattatgcacgacatgactCTATA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125019808 128 - 192294377 gtaagagtttatgtatctaaacacatttaa---tagaaaagtatgtaaaactatgtattataatctcatgggatcacttttgtatatgtattctatctt----tga---aatgttattatgcacgacatgactCTATA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122282274 128 - 180432695 GTAAGAGTTTATGTATCTAAAAACATTTAA---TAGAAAAGTATGTAAAACTATGTATTATAATCTCATGGGATCACTTTTGTATATGTATTCTATCTT----TGA---AATGTTATTATGCACGACATGACTctata
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121538307 128 - 127223203 gtaagggtttatgtatctaaacacatttaa---tagaaaagtatgtaaaactatgtattataatctcataggatcacttttgtatatgtattccatctt----tga---aatgttattatgcacgatatgactCTATA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20081410 125 + 128169293 gtaagagtttgtgtatctaagcatatttaaacatggaaaagaatgtaaaaatatctgttataatacc---------tttatatatatgtagtccatctt----tgacctaatgttattatgcacgacatgactCTGTA
i calJac3.chr8                 C 0 C 0
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e canFam3.chr18                  4103066   0 +  55844845 C
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1              119857 2065 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=279164.000000
s hg38.chr14_KI270725v1_random    122983 148 +    172810 TGACA-----AAAATAAAATAACACATTGTAAAAA-ATGTACAC--AGATATCAAACATAT-------TAATATTGT-AAAAATAAAAA----TATTTATTCAGTGTAAGAATTTGT------------AATGATCACAAAATGTTCACAGCTTATATTTTAGTACAGTTTCAAATGCCT
s panTro4.chrUn_GL393527          284974 140 +    341619 TGACA----------AAAATAATACATTTTAAAAA-ATGTACAC--ATGTATCAAACatat----------tattat-aaacataaaaa----tatttattCAGTGTAAGAATTTGT------------AATGATCACAAAATATTCACAGCTTATATTTAAGTACAGTTTCAAATGCCT
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44144045 151 -  99891981 TGACA-----AAAATAAAATAACAAATAGTAAAAA-TTGTACACATATGTATTGAACATATTA--ATTTAATATTAT-AAAAATAAAAA--------TATTCAGCATAAGAATTTAT------------AATGATCACAAAATGTTCACAGCTTATATTTTAGTAGAGTTTCATATGCCT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124568575 142 - 198365852 CGACA-----AAAATAAAATAAT----AGTAAAAA-ATGTACACATATGTATCAAACatat-------taatattat-aaaaatataaa--------tattCAGTGTAAGAACTTAT------------AATGATCACAAAATGTTCACAACTTATATTTTAGTAGGGTTTTAAATGCCT
i rheMac3.chr3                 C 0 I 1797
s macFas5.chr3                 125019936 146 - 192294377 CGACA-----AAAATAAAATAAT----AGTAAAAA-ATGTACACATATGTATCAAACATAT-------TAATATTAT-AAAAATATAAA----TATTTATTCAGTGTAAGAACTTAT------------AATGATCACAAAATGTTCACAACTTATATTTTAGTAGGGTTTTAAATGCCT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122282402 145 - 180432695 tgaca-----aaaataaaataat----agtaaaaa-atgtacac--atgtatcaaacatat-------taatattataaaaaatataaa----tatttattcagtgtaaGAACTTAT------------AATGATCACAAAATGTTCACAACTTATATTTTAGTAGGGTTTTAAATGCCT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121538435 147 - 127223203 TGACA-----AAAATAAAATAATAAACAGTAAAAA-ATGTACACATATGTATCAAACATAT-------TAATATTATAAAAAATATAAA--------TATTCAGTGTAAGAACTTAT------------AATGATCACAAAATGCTCACAACTTATATTTTAGTAGGGTTTTAAATGCCT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20081535 157 + 128169293 TGACaaaaataaaataaaataataaataGTGAAAA-CTGTATACACATGTGTCAAACatattatcaattaatatcat-aaaaataaaaa----tatttattCAGT---AGAATTAAT------------AATGATCCTAAAATGTTCACAACTTACACTTTAGTC--GTTTTAAATGCTT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4103066 157 +  55844845 TAACA-----AAGATAAAATAA---ATAGTGAAAGCACATGCACCTACATATTATGGAT-T-------TATTACTAT-ACAAATAAAAATTAATATTTACCCAGTGCCAGaatttataaacaaaaataaaataatcacaaaat------aaattgtatattattaGGTTATTTAAAGTTC
i canFam3.chr18                C 0 C 0
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1              119857 2065 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=174246.000000
s hg38.chr14_KI270725v1_random    123131 97 +    172810 GGTGCAATTACTATTTATTTCTGTGTGTATTTTAAACATGTATATAATAAATATTTTTCAGGTTCAACAATATATATC--AATCCAACTGGCTCTTATA
s panTro4.chrUn_GL393527          285114 97 +    341619 AGTGCAATTACTATTTATTTCTTTGTGTATTTTAAACATCTATATAATAAATATTTTTCAGGTTCAACAATATATATC--AATCCTATAGGCTCTTATA
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44144196 97 -  99891981 AGTTTAATTACTATTTATTCCTTTGTGTATTTTAAACATGTATATAATAAATATTTTTCAGGTTAAACAATATATATC--AAACCTACTGGCTCTTATA
i nomLeu3.chr17                C 0 I 5
s macFas5.chr3                 125020082 97 - 192294377 AGTTTAATTACTATTTATTTCTTTGTGTATATTAAACATGTATATAATAAATATTTTTCAGGTTCAACAATATATATC--AAACCTACTGGCTTTTATA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122282547 97 - 180432695 AGTTtaattactatttatttctttgtgtattttaaacatgtatataataaatatttttcaggttCAACAATATATATC--AAACCTACTGGCTTTTATA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121538582 96 - 127223203 AGTTTAATTACTATTT-TTTTTGTGTGTATTTTAAAAATGTATATAATAAATATTTTTCAGGTTCAACAATATATAGC--AAACCTACTGGCTTTTATA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20081692 97 + 128169293 AGTTTAATTATAA--CATTTCTTTGTGTATTTTAAACATGCATATAATAAATGTTTTTCAGGTTCAACAATATGTATCATAAACCTACGGGCTCTTATA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4103223 96 +  55844845 AGCttaattatgatttatttttt--tatatgataaatattGACATAACATATATTTTACATGTTGAACAACATGTATCATAAACTTTTGGGCTCTTCt-
i canFam3.chr18                C 0 C 0
e rhiRox1.KN300005v1             3635976 4167 +   4311341 I
e rheMac3.chr3                 124568717 1797 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1              119857 2065 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=15404.000000
s hg38.chr14_KI270725v1_random    123228 5 +    172810 AATAT
s panTro4.chrUn_GL393527          285211 5 +    341619 AATAT
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44144298 5 -  99891981 AATAT
i nomLeu3.chr17                I 5 C 0
s macFas5.chr3                 125020179 5 - 192294377 AATAT
i macFas5.chr3                 C 0 I 5
s papAnu2.chr3                 122282644 5 - 180432695 AATAT
i papAnu2.chr3                 C 0 I 5
s chlSab2.chr21                121538678 5 - 127223203 AATAT
i chlSab2.chr21                C 0 I 5
s rhiRox1.KN300005v1             3640143 5 +   4311341 AACAT
i rhiRox1.KN300005v1           I 4167 N 0
s calJac3.chr8                  20081789 5 + 128169293 AATAT
i calJac3.chr8                 C 0 I 5
s canFam3.chr18                  4103319 5 +  55844845 aatat
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124568717 1797 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1              119857 2065 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=212269.000000
s hg38.chr14_KI270725v1_random    123233 137 +    172810 TAGTTAAAATCAATTAGTAAATTCATA------------------TATAT--ATATACACACGTGTA-TCAgt----ctgtatgcatgtatgtgtgtgtaaatgtaac--------------------------tgtgtgtgt-aaatgtaattgGATGCATCCTAATATTTACCTTTACCTACAAGAT
s panTro4.chrUn_GL393527          285216 145 +    341619 TAGTTAAAATCAATTTGTAAATTCAtg------------------tatat--atatgcatacctgta-tcagtaagcgtgtgtgcatgtgtgtttgtgtaaatgtaat----------------------tgtatgtgtgtgt-aaatgtaATTGGATGCATCCTTATATTTACCCTTACCTACAAGAT
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44144303 145 -  99891981 TAGTTAAAATCAATTAGTAAATTCAtg------------------tatat--atatacatatgtgta-tcagtgagtgtgtgtgcatgtatgtgggtgtaaacgtaat----------------------tgtgtgtgtgtgt-aaatgtAATTGGATGCATCCTAATATTTACCCTTACCTACAGGAT
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125020189 169 - 192294377 TAGTTGAAATCAATTAGTAAATTCATG------------------TATATAGATACACACACgtgta-tcagtgagtgtgtgtgcatgtatgtgtgtgtaaatgtaattgtatgtgtgcgtaaatgtaattgtatgtgtgtgt-AAATGTAATTGGATGCCTCCTAATATTTACCCTTACCTACAAGAT
i macFas5.chr3                 I 5 C 0
s papAnu2.chr3                 122282654 167 - 180432695 TAGTTGAAATCAATTAGTAAATTCatg------------------tatatagatacacacacatgta-tcagtga--gtgtgtgcatgtatgtgtgtgtaaatgtaattgtatgtgtgcgtaaatgtaattgtatgtgtgtgt-aaatgtaatTGGATGCCTCCTAATATTTACCCTTACCTACAAGAT
i papAnu2.chr3                 I 5 C 0
s chlSab2.chr21                121538688 165 - 127223203 TAGTTGAAATCAATTAGTAAATTCATG------------------TATATAGATACACACACgtgta-tcagt----gtgtgtgcatgtatgtgtgtgtaaatgtaattgtatgtgtgtgtaaatgtaattgtatgtgtgtgt-AAATGTAATTGGATGCCTCCTAATATTTACCCTTACCTACAAGAT
i chlSab2.chr21                I 5 C 0
s calJac3.chr8                  20081799 142 + 128169293 TAGTTGAAATCAATTAGTAAATTCatgtgtgtgtgtgtgtatatatatatgcacacatacatgtata-tCAGTCAGAGTGTGTGCATGTATGTGTGTGTAAATGTAAT---------------------------------------------TGTATGCACTCTAATATTT-CCCTTACCTACAAGAC
i calJac3.chr8                 I 5 C 0
s canFam3.chr18                  4103324 131 +  55844845 taattaaatttaa-----aaat---tg------------------tatatttatatataaaCAAATAGTCTTTATGAGGATATGCATATGTGCATGTG--------------------------------TGCGTGTGTATGTAAAAGGTAAGTGACTATATTCTAACAGTTACCCTTGACTATGAGAT
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124568717 1797 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1              119857 2065 +   1121937 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=3276.000000
s hg38.chr14_KI270725v1_random    123370 1 +    172810 T
s panTro4.chrUn_GL393527          285361 1 +    341619 T
i panTro4.chrUn_GL393527       C 0 I 2005
s nomLeu3.chr17                 44144448 1 -  99891981 T
i nomLeu3.chr17                C 0 I 1619
s macFas5.chr3                 125020358 1 - 192294377 T
i macFas5.chr3                 C 0 I 1623
s papAnu2.chr3                 122282821 1 - 180432695 T
i papAnu2.chr3                 C 0 I 1620
s chlSab2.chr21                121538853 1 - 127223203 T
i chlSab2.chr21                C 0 I 1623
s calJac3.chr8                  20081941 1 + 128169293 T
i calJac3.chr8                 C 0 I 2831
s tarSyr2.KE946558v1              121922 1 +   1121937 T
i tarSyr2.KE946558v1           I 2065 I 18562
s canFam3.chr18                  4103455 1 +  55844845 T
i canFam3.chr18                C 0 I 2552
e rheMac3.chr3                 124568717 1797 - 198365852 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e ponAbe2.chrUn                  5688366 5371 +  72422247 I

a score=10476.000000
s hg38.chr14_KI270725v1_random    123371 3 +    172810 TCC
s panTro4.chrUn_GL393527          287367 3 +    341619 TCC
i panTro4.chrUn_GL393527       I 2005 C 0
s ponAbe2.chrUn                  5693737 3 +  72422247 TCC
i ponAbe2.chrUn                I 5371 C 0
s nomLeu3.chr17                 44146068 3 -  99891981 TCC
i nomLeu3.chr17                I 1619 C 0
s rheMac3.chr3                 124570514 3 - 198365852 TCC
i rheMac3.chr3                 I 1797 C 0
s macFas5.chr3                 125021982 3 - 192294377 TCC
i macFas5.chr3                 I 1623 C 0
s papAnu2.chr3                 122284442 3 - 180432695 TCC
i papAnu2.chr3                 I 1620 C 0
s chlSab2.chr21                121540477 3 - 127223203 TCC
i chlSab2.chr21                I 1623 C 0
s calJac3.chr8                  20084773 3 + 128169293 TCC
i calJac3.chr8                 I 2831 C 0
e canFam3.chr18                  4103456 2552 +  55844845 I
e saiBol1.JH378145              17633427 32819 +  18371965 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=9411.000000
s hg38.chr14_KI270725v1_random    123374 3 +    172810 TTT
s panTro4.chrUn_GL393527          287370 3 +    341619 TTT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5693740 3 +  72422247 TTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44146071 3 -  99891981 TTT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124570517 3 - 198365852 TCT
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125021985 3 - 192294377 TCT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122284445 3 - 180432695 TCT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121540480 3 - 127223203 TCT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20084776 3 + 128169293 TTT
i calJac3.chr8                 C 0 C 0
s saiBol1.JH378145              17666246 3 +  18371965 TTT
i saiBol1.JH378145             I 32819 N 0
e canFam3.chr18                  4103456 2552 +  55844845 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=443693.000000
s hg38.chr14_KI270725v1_random    123377 171 +    172810 GAGACAGCATTAAAGAAAGAGCACCTTGTATATAAATTCAATGCGAAGAGACAAGATATTCTTGATTCTGAAGTCTTGTTCTTTGATACAGCAATGTAATTAATAATAAGAAGAAAAGCAGGACATAGAT-ATGGAGTCTATTTTAAACAAAAATTGTCTATAGATTTTGAT
s panTro4.chrUn_GL393527          287373 166 +    341619 GAGACAGCATTAAAGAAAGAGCACCTTGTATA--AATTCAATACCAAGAGAAAAGATATTCTTGATTCTGAAGTCTTTTTCTTTTATACAGCAAAGTAATTAATAA---GAAGAAAAGGAGGACATAGAT-ATGGAGACTATTTTAATAAAAAATTGTTTATAGATTTTGAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5693743 169 +  72422247 GAGACAGCATTAAAGAAAGAGCACCTTGTATA--AATTCAGTGCCAAGAGATAAGATATTCTTGATTCTGAAGTCTTGTTCTTTTATACAGCAATGTAATTAATAATAAGAAGAAAAGCAGGACATAGAT-GTAGAGTCTATTTTAATCAGAAATTGTCTATAGATTTTGAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44146074 169 -  99891981 GAGACAGCATTAAAGAAAGAGCATCTTGTATG--AATTCAATGCCAAGAGACAATATATTCTTGATTCTGAAGTCTTGTTCTTTTATACAGCAATGTAATTAATAATAAGAAGAAAAGCAGGACATAGGT-GTGGAGTCTATTTTAATAAAAAATTGTCTGTAGATTTTGAT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124570520 167 - 198365852 GAAACAGCGTTAAAGAAAGAGCACCTTGTATG--AATTCAATGCCAAGAGACAAGATATTCTTGATTCTGAAGTTTTGTTATTTCATACAGCAATGTAATTAATAATAAGAAG-AAAGCAGGACATAGGT-GTGGAGTCTATTTTAATCA-AAATTGTCTACAGATTTTGAT
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125021988 167 - 192294377 GAAACAGCGTTAAAGAAAGAGCACCTTGTATG--AATTCAATGCCAAGAGACAAGATATTCTTGATTCTGAAGTTTTGTTATTTCATACAGCAATGTAATTAATAATAAGAAG-AAAGCAGGACATAGGT-GTGGAGTCTTTTTTAATCA-AAATTGTCTACAGATTTTGAT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122284448 167 - 180432695 GAAACAGCGTTAAAGAAAGAGCACCTTGTATG--AATTCAATGCCAAGAGACAAGATATTCTTGATTCTGAAGTTTTGTTATTTCATACAGCAATGTaattaataataagaag-aaagcaGGACGTAGGT-GTGGAGTCTATTTTAATCA-AAATTGTCTACAGATTTTgat
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121540483 164 - 127223203 GAAACAGCGTTAAAGAAAGAGCACCTTGTATG--AATTCAATGCCAAGAGACAAGATATTCTTGATTCTGAAGTTTTGTTATTTCATACAGCAATGTAAT---TAATAAGAAG-AAAGCAGGACATAGGT-GTGGAGTCTATTTTAATCA-AAATTGTCTATAGATTTTGCT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20084779 163 + 128169293 GAGACGGCATTGCAGGTAGAGCAGCTTGTATG--AATTCAATACCAAGAGACAAGATCTTCTTGATTCTGAAGTTTTGTAGTTTTATACAGCAAAGTAAT-------AAAAAGAAAAGCAGGACATAGGTAATACAGTCTATTTTAATCAGCAGTGGTCTGTAGATTTTGAT
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4103456 2552 +  55844845 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=2802958.000000
s hg38.chr14_KI270725v1_random    123548  971 +    172810 GATAAAAT-TTAAAAATCTACTATATTTAGTTAGTCACAAAAA-ACCAGGTTGTGGGAACATATTTGGTCA-----AT-AAAACACCCCTACCAAATGCTGACAAGAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCAGATGGCCTGAGATGGGTTAATTTGAAAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCATAATCCACTGCTGTCTCCTACATTCAGTTTCTCAGTCTGTGCTCTTTTAATT--TTGGGGGGAGGGAAGCCAGTCCTTTAAAGCGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCACGG-TGTCTGACTTTGTTCCATCAGCCACTTGGGCTTTCTCTGGGTCTT-CTCTGCCCTAGGGATAGCACTACTATTGAAAACATGTCTTTGTGACATTGTCTATGCCAGGAACTCCCAACATATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCAAGAGGTGTGCTGTTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAATATTTTTAAATACATTGTCGATCACCAAAAGGAGCATAAGGGCT----TTATTGGTTTGTAGCAGATGTATTAATAGCCCAGCCCCTATTCCTTACCTGTAGCTGCTGGGAAGAAAACCATTCT-TAACACTCTA-CAAGGTCTCATCTCC-AGAATTTGCACCT--GTTTCTAGCTGAGGACTTTCTCTAGCAGCACGGGAGCTTGTGATTGGGCATGAAGTGGGAAGAAAAG-------------GTGAGGG-------TAACTAAGAAGA-------------ATCTCCCTGGATTCAGTGATGTAATTCTGAGG-CATGTTCCACGTAGCTTCCCATAAA----ATTAAGCCCAGATATCTAACACAGGAACTTACCTCTTAACACG--TGTGGTATTGGCTTGTCTCTCTTTCCTGTTTTATTTTGT---------TCTCTTTTCCT---TGTCTCACTT-TCAC----TGTG--------TCCTCACTCCTGCTTTAAG
s panTro4.chrUn_GL393527          287539  965 +    341619 GATAACAT-TTAAAAATCTACTATATTTAGTTA----CAAAAA-ACTAGGTTGTGGGAACATATTTGGTCA-----AT-AAAACACCCCTACCAAGTGCTGACAAGAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCGGATGGCCTGAGATGGGTTAATTTGAAAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCATAATCCACTGCTGTCTCCCACATTCAGTTTCTCTGTTTGTGCTCTTTTAATT--T-GGGGGGAGGGAAGCCAGCCCTATAAACCAATCTTCAGCGTGATGGCAGAGACAAGGAGTGTGGACAGGTGGCACGG-TGTCTGACTTTGTTCCAGCAGCCACTTGGGCTTTCTCTGGATCTT-CTCTGCCCTAGGGATAGCACCACTATTGAAAACGTATCTTTGTGACATTCTCTATGCCAGGAACTCCCAACACATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCAAGAGGTGTGCTGTTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAATATTTTTAA-TACATTGTCGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTAGCAGATGTATTAATAGCCCAGCCCCTATTCCTTACCTGTAGCTGCTGGGAAGAAAACCATTCT-TAACACTCTA-CAGGGTCTCATCTCT-AGAATTTGCACCT--GTTTCTAGCTGAGGACTTTCTCTAGCAGCATGGGAGCTTGATACTGCACATGAAGTGGGAAGAAAAG-------------GTGAGGG-------TAACTAACAAGA-------------ATctccctggattcagtgatgtaattctgagg-catgttccacatagcttcccagaga----attaaggccagatatctaacacaggaacttgcctcttaacacg--tgtggtattggcttttctatctttcctgttttatttTGT---------TCTCTCTTCCT---TGTCTCACTT-TCAC----TGTG--------TCCTCACTCCTGCATTAAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5693912  963 +  72422247 AATAAAAT-TTAAAAATCTACTATATTTAGTTAGTTACAAAAA-ACTAAGTTGTGGGAACATATTTGGTCA-----AT-AAAACACCCCTACCAAATGCTGACAAGAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCAGATGGCCTGAGATGGATTAATCTGAAAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCCTAATCCACTGCCGTCTCCTACATTCAGTTTCTCAGTTTGTGCTCTGTTAATT--TTGGGGAGCGGGAAGCCAGTCCTTTAAACCGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCGCGG-TGTCTGACTTTGTTCCAGCAGCCACTTGGGCTTTCTCTGGGTCTT-CTCTGCCCTAGGGATAGCACCACTATTG-AAACATGTCTTTGTGACATTCTCTATGCCAGGAACTCCCAACACATTTTCCTTGAAACTG-----ATGAATAAAAATAAACCAAGAGGTGAGCTGCTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAAGATTTTTAAATACATTGTCGATCACCAAAAGGAGCATAAAGGCT----TTATTGATTTGTAGCAGATGTATTAATAGCCCAGCCCCTATTCCTTACCTGTAGCTGCTGGGAAGAAAACCATTCT-TAACACTCTA-CAAGGTCTCATCTCC-AGAATTTGCACCT--GTTTCTAGCTGAGGACTTTCTCCAGCAGCACGGGAGCTCGTTACTGGGCATGAACTGGGAAGAAAAG-------------GTGAGGG-------TAACTAAGAAGA-------------ATCTCCCTGGATTCAGTGACGTAATTCTCAGG-CATGTTCCACATAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACAGGAACTTGCCTCTTAACATG--TGTGGTATTGGCTTTTCTGTCTTTCCTGTTTTATTTTAT---------TCTCTCTTCCT---TGTCTCATTT-TCAC------TG--------TCCTCACTCCTGCTTTAAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44146243  972 -  99891981 GATAAAAT-TTAAAAATCTACTATATTTAGTTAGTTACAAAAA-ACTAGGTTGTGGGAACATATTTGGTCA-----AT-AAAACATCCCTACCAAATGCTGACAAGAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCATATGGCCTGAGATGGGTTAATTTGAAAGAAT--GCTTCCAAATCTGAGGTGACCCCTGAGAACAGCGTAATTCACTACTGTCTCTTACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TTGGGGGGAGGGAAGCCAGTCCTTTAAACCGATCTTCAGCATGATGGCAGAACCAAGGAGTGTGGACAGGTGGCATGG-TGTCTGACTTTGTTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTCTGCCCGAGGGATAGCACCACTGTTGAAAACATGTCTTTGTGACATTCTCTATGCCAGGAACCCCCAATGCATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCAAGAGGTGTGCTGTTCATT--TGTTTCCTCCTTTCTGCAGCCCCTCTTGATCACCTAATATTTTAAA-TACATTGTCAATCACCAGAAGGAGCATAAGGGGT----ATATTGATTTGTAGCAGATGTATTAATAGCCCAGCCCCTATCCCTTACCTGTAGCTGCTGGGAAGAAAACCATTTT-TAACTCTCTACCAAGGTCTCATCTCC-AGAATTTGCACCT--GTTTCTAGCCGAGGACTTTCTCTTGCAGCACCGGAGCTTGTTACTGGGCATGAAGTGGGAAGAAAAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTCTCCCTGGATTCAGTGATGTAATTCTGAGG-CATGTTCCACATAGCTTCCCACAGA----ATTAAGCCCAGATATCTAACACAAGAACTTGCCTCTTAACACA--TGTGGTATTGGCTtttctatttttcctgttttatttttc---------tctctcttcctttctgtttcactt-tcac----tGTG--------TCCTCACTCCTGCTTTAAG
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124570687  965 - 198365852 GATGAAAT-TTAAAAAT-TACTATATTTAGTTAGTTCCAAATA-ACTAGGTTGTGGGACCATATTTGTTTA-----AT-AAAACACCCCTACTAAATGCT---GGAAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCAGATAGCCTGAGATGGGTTAATTTG-AAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCATAGTTCACTGCTGTCTCCTACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TCGGGGGGAGGGAAGCCAGTCCTTTAAACTGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCACGG-TCTGTAACCTTGTTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTTCGCCCTAGGGATAGCATTATTACTGGAAACATGTCTTTGTGACGTTCTCTATGCCAGGAACTCCCGATGCATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCATGAGGTGTGCTGTTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAATATTTTAAA-TACATTGTCGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTACCGGAT---------GCCCAGCCCCTTTCCCTTACCTGTAGCTGCTCGGAAGAAAACCATTGT-TAACACTCTA-CAAGGTCTCATCTCC-AGTATTTGCACCT--GTTTCTACCTGAGGACTTTCTCTAGCAGCATGGGAGCTTATTACTGGGCATGGAGTGGGAAGAAGAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTCTCCCTAGATTCAGTGATGTAATTCTGAGG-CATGTTCCGCGTAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACAAGAACTTGCCTCTTAACACA--TATGGTATCGGCTtttctatctttcctgtttttttttttttttctctctctctcttcct---cgtctcactt-tcAC----TGTG--------TCCTCACTCCTGCTTTAAG
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125022155  966 - 192294377 GATGAAAT-TTAAAAAT-TACTATATTTAGTTAGTTTCAAATA-ACTGGGTTGTGGGACCATATTTGTTTA-----AT-AAAACACCCCTACTAAATGCTG--GGAAAAAAAAGGTAGGTACCACCTTTCTTCTCTGCAGATAGCCTGAGATGGGTTAATTTG-AAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCATAGTTCACTGCTGTCTCCTACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TCGGGGGGAGGGAAGCCAGTCCTTTAAACTGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCACGG-TCTGTGACCTTGTTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTTCGCCCTAGGGATAGCATTATTACTGGAAACATGTCTTTGTGACGTTCTCTATGCCAGGAACTCCCGATGCATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCATGACGTGTGCTGTTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAATATTTTAAA-TACATTGTCGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTACCGGAT---------GCCCAGCCCCTTTGCTTTACCTGTAGCTGCTCGGAAGAAAACCATTGT-TAACACTCTA-CAAGGTCTCATCTCC-AGTATTTGCACCT--GTTTCTACCTGAGGACTTTCTCTAGCAGCATGGGAGCTTATTACTGGGCATGGAGTGGGAAGAAGAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTCTCCCTAGATTCAGTGATGTAATTCTGAGG-CATGTTCCGCGTAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACAAGAACTTGCCTCTTAACACA--TATGGTATCGGCTtttctatctttcggttttttttttttttttctctctctctcttcct---cgtctcactt-tcac----tgtg--------tcctcactcCTGCTTTAAG
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122284615  962 - 180432695 gatgaaat-ttaaaaat-tactatatttAGTTAGTTCCAAATA-ACTAGGTTGTGGGAccatatttgttta-----ataaaaacacCCCTActaaatgct---gaaaaaaaaagttaggtacCACCTTTCTTCTCTGCAGATGGCCTGAGACGGGTTAATTTG-AAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAAGAGCGTAGTTCACTGCTGTCTCCTACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TCGGGGGGAGGGAAGCCAGTCCTTTAAACCGATCTTCAGCAAGATGGCAGAGCCAAGGGGTGTGGACAGGTGGCACGG-TGTGTGACCTTGTTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTCCGCCCTAAGGATAGCACTATTACTGCAAACATGTCTTTGTGACATTCTCTATGCCAGGAACTCCGGACGCATTTTCCTTGAAActgatgaaatgaataaaaataaaccaaaatgtgtgctgtttgtttctgtttcctcttttctgcAGCCCTTCTTGAtcatctaatattttaaa-tacattgtcGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTACCAGAT---------GCCCAGCCCCTTTCCTTTACCTGTAGCTGCTGGGAAGAAAACCATTTT-TAACACTCTA-CGAGGTCTCATCTCC-AGTATTTGCACCT--ATTTCTACCTGAGGACTTTTTCTAGCAGCATGGGAGCTTATTACTGGGCATGGAGTGGGAAGAAGAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTTTCCCTAGATTCAGTGATGTAATTCTGAGG-CATGTTCCACGTAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACAGGAACTTGCCTCTTAACACA--TGTGCTATTGGCTTTTctatctttcctgttttttttttttttt-----tctctcttcct---cgtCTCACTTATCAC----TGTG--------TCCTCACTCCTGCTTTAAG
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121540647  963 - 127223203 GATGAAAT-TTAAAAAT-TACTATATTTAGTTAGTTCCAAATA-ACTAGGTTGTGGGACCATATTTGTTTA-----AT-AAAACACCCCTACTCAATGCTG--AAAAAAAAAAGTTAGGCACCACCTTTCTTCTCTGCAGATGGCCTGAGATGGGTTAATCTG-AAGAAT--GCTTCCAAACCGGAGGTGACCCCTGAGAACAGCGTAGTTCACTGCTGTCTCCAACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TCGGGGGGAGGGAAGCCAGTCCTTTAAACCGATCTTCAGCATGATGGCGGAGCCAAGGACTGTGGACAGGTGGCACGG-TCTGTGACCTTATTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTCTGCCCTAGGGATAGCACTATTACTGCAAACATGTCTTTGTGACATTCTCTATGCCAGGAACTCCCGACGCATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCAAAATGTGTGCTGTTTGTTTCTGTTTCCTCTTTTCTGCAGCCCTTCTTGATCATCTAATATTTTAAA-TACATTGTCGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTACCAGAT---------GCCCAGCCCCTTTCCCTTACCTGTAGCTGCTGGGAAGAAAACCATTTT-TAACACCCTA-CGAGGTCTCATCTCTAAGTATTTGCACCT--ATTTCTACCTGAGGACTTTCTCTAGCAGCATAGGAGCTTATTACTGGGCATGGAGTGGGAAGAAGAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTTTCCCTGGATTCAGTGATGTGATTCTGAGG-CATGTTCCACGTAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACGGGAACTTGCCTCTTAACACA--TGTGCTATTGGCTTTTCTATCTTTCCTGTGTTTTTTTTTTTTT----CTCTCTCTTCCT---CGTCTCACTT-TCAC----TGTG--------TCCTCACTCCTGCTTTAAG
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20084942  840 + 128169293 GATAAAAT-TTCAAAGTCTACTATACTTAGTTC----CAAAAA-ACTAGG-TGTGGGAACATATTTGGTCA-----AC-AGAACACCCCAACCAAATGCTGACAAAAACAAAAGTTAGATAGCACCTTCCTTCTCTGCAGATGACCTGAGATGGGTTAATTTGGAAGAAT--GTTTCTAAACCTCAAGTGACCCCTGAGAACAGGATAATTCACTGCTGTCTCCTACATTCAGTTTCTCAGTTT-TGTTCTTTTAATA--ACTTGGGGAGGGAAGCCAGTCCTTTAAACTGATCTTCAGCATGATGGCAAATCCAGTGAGTGTGGACAGGTGGCACCA-TGTCTGACTTTGTCCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CCCTGAACTTGGGATAGCACCACTACTGGCAACATGTCTTTGTGACATTCCCTAGGTCAGGAACTCCCAATGCATTTTCCTTGAAACTG-----ATGAATAAAATTACACCAAG-TGTGTGCTGTTTATT--TGTTTTCTCC-TTCTACAGCACTTCTTGATCATCTAATATT--------------------------------------------------------------------------------------------------CTGCTGGGAAGAAAACCATTTT-CAACACTCTA-CAAGGTCTCATGTCC-AGTACTTGCACCT--GTTTCTAGCTGAGGACTTTCTCTAGCAGCAC-GGAGCTTGTTACTGGGTGTGTGGTGGGAAGAAGTG-------------GTGAGGG-------AATCTAAGGAGG-------------GTCTCCCCGG-------------ATTCTGAGG-TGTGTTCCACGTAGCATCCCATAG--------ATGCTCACGTATCTGACACAGGAACATGAGTCTTAACACA--TGCCATATTGGCTTTTCTACCTTTCCTGTTTTATTTTT----------TATCTCTT------TGTCTCAATT-TTAC----TATG--------TCCTCACTCCTGCTTTAAG
i calJac3.chr8                 C 0 I 321
s canFam3.chr18                  4106008 1004 +  55844845 GATAAAATATTTAAAATTTGTTAGACTTGATTAACTTCAAAAATACTAGGCTGTGGGG-CATATTCAGTGATTCCTAC-CAAACATCCTCACTAAATGCTAACAAATGCAAATCTTAGATTTCCTGTTTCTTCTCTGCAGCTACCCTGAAATCTCTTAATTTGAAAGACCTGTTTTCTAAAACTGAAGTGACATCTGAGAACAGAGTAATTTACTCTGGTTTCCTAAACTCAG-TTCTCAATTTGTGTTCTTTTAATTCATTGGAGGAAAGGGAGCCAGTCCTTTAAA--GACT-----CATGTGCACAGAGCCA-TGTGCATGAGAAGATGGCAAGGCTGTGGGTGTCTTTCCCAGCAGCTATTTTATGATTTTTCAGGTCTTGTCCTTCCCTCGTGACACCATCACTACTTGAAACATGTTTTTGCTACATTCTCTATGCCAGCCACTCCCAAAACATTTTCCCTGAAACTGAAGGAATGAATAAAAATAAGCCAAGAGATAT-------------------TATCTTCTACAAGATTTCTAGGTGTTCTAA-ATCTAAAA-TACAATGTGAATCACCAAATGAAGAATAAAGGCTACAGATGTGTATTTATACCAGATGTTCGAATGGCCTGTCCTGTGTTTTCT-CGCAAAGCTGCTGGGAAGAAAACTATTTTCCGACACTTGT-CAGGG--TAACCTCC-AGCAGCTTAATCTCCATTTCTACATAAGGACTAACTCTAGCACCAGAGGAAATAGTTACTGGGGATGGGAAGAGAAAAATGGTCAAACTAACATCTTAAGGGCACCTCACAATTAAGGAGAGGTAGATATATAGGTCTCCCTCTCTTTGGTACTACAGTTTTGAGGTTCTGTTCCACCTGGCTTCCAACAGAATTGATTGAGTTTTGGTGTCTAGCACAAGAATTTGTTTATTAACATATTTATGTTAAT-GCTTTTCTAT-TTGCTGGCTTTATTTCTTT--------CCTCTCTTCCT---TGTCTCCCTT-TCACATGTTTTGAAGATTATTCCCCACCCC----CCAAA
i canFam3.chr18                I 2552 C 0
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=409967.000000
s hg38.chr14_KI270725v1_random    124519 180 +    172810 AATACCCA--------------------------AACAAATACGT-----------------------------------------------------------------------------------------TCATTTATTTTTTTA--GACTCTCAGAACAGAG--------------------------------------------------------TTGATAGTTGAACTTCTAATCTATGT---TAATCAGCTTGGATGCAATACTGACAGGAAGATGGTGAACTCACAATGTCTAATTAAGAT-----ACAATTTAAA----AA---ATATATTGAATCATGTCCAAAGATTTAAAAAA
s panTro4.chrUn_GL393527          288504 179 +    341619 AATACCCA--------------------------AACAAATACAT-----------------------------------------------------------------------------------------TCATTTATTTTTTTA--GAGTCTCAGAACACAG--------------------------------------------------------TTGATAGTGTAACTTGTAATGTGTGA---TAATCAGCTTGGATGCTATACTGACAGGAAGATGGTGAACTCACCATGTCTAGTTAAGAT-----AAAATT-AAA----AA---GTATATTGATTAATGTCCAAAGATTTAAAAAT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5694875 179 +  72422247 AATACCCA--------------------------AATGAATACAT-----------------------------------------------------------------------------------------TCATTTATTTTTTTA--GACTCTCAGAACACAG--------------------------------------------------------TTGATAGTTGAACTTGTAATCTATGA---TAATCAGCTTGGATGCTATACTGACAGGAAGATGGTGAACTCACAATGTCtaattaagat-----aaaatt-aaa----aa---atatattGATTCATGTCCAAAGATTTAAAAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44147215 182 -  99891981 AATACCCA--------------------------AACAAATACAT-----------------------------------------------------------------------------------------TCATTTAGTTTTTTA--AACTCTCAGAACA-AG--------------------------------------------------------TTGACAGTTGAACTTGTAGTCTGTGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAATGTCTAATTAAGTT-----AAGATA-AAATGTTAA---AAATATTGATTCATGTCCAAATATTTTAAAAA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124571652 187 - 198365852 AATATCCA--------------------------AACAAATATAT-----------------------------------------------------------------------------------------TCATTTCTTTTTTTT--AACTCTCAGAACACAG--------------------------------------------------------TTGACAGTTGACGTTGTAATTTATGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAACATCTAATTAAGTTAAGACaaaata-aaa----aatatatatattGATTCATGTCTAAAGATTTAAAAAA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125023121 187 - 192294377 AATATCCA--------------------------AACAAATATAT-----------------------------------------------------------------------------------------TCATTTCTTTTTTTT--AACTCTCAGAACACAG--------------------------------------------------------TTGACAGTTGACGTTGTAATTTATGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAACATCTAATTAAGTTAAGACAAAATA-AAA----AATATATATATTGATTCATGTCTAAAGATTTAAAAAA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122285577 181 - 180432695 AATACCCA--------------------------Aacaaatacat-----------------------------------------------------------------------------------------tcat---tttttttt--aactctcagaACACAG--------------------------------------------------------TTGACAGTTGACATTGTAATTTATGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAACATCTAATTAAgttaaggcaaaata-aaa----aa---aaatattgattcatgtccaaagatttaaaaaa
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121541610 189 - 127223203 AATACCCA--------------------------AACAAATACAT-----------------------------------------------------------------------------------------TCATTTCTTTTTTTTTAAACTCTCAGAACGCAG--------------------------------------------------------TTGACAGTTGACATTGTAATTTATGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAATAGCTAATTAAGTTAAGACAAAATA-AAA----TATATATATATTGATTCACGTCCAAAGATTTAAAAAA
i chlSab2.chr21                C 0 I 10
s calJac3.chr8                  20086103 179 + 128169293 AACACCCA--------------------------AACAAATGCCT-----------------------------------------------------------------------------------------TCATGTCATTTTAT---ACTTCCCAGAACACAG--------------------------------------------------------TTGTCAGTTGAAGTCGTAATCTATGA---TAATCAGCTTGGATGCTATACTAACAGTAAGATGGTGAACTCATGATGTC-AATTAAGTT-----AAAATG-AAATA--AA---AAATACTGATTAATGTCCAAATATTTAAAAAA
i calJac3.chr8                 I 321 C 0
s canFam3.chr18                  4107012 349 +  55844845 AAACCCCACATTAACTTCTCTTTTGATTTCACAGAACAAGTACATAGCACTTGAAACCATAATCTTgggcagccccagtagctcagtagtttagcatcactttcggcctagggcatgatcctggagacccaggatcaagtcccccgtcg--ggctccctgcatggagcctgcttctccctcagcctgtgtctctgtgtctctcatgaatacataaataaaatcttaaaaaTAGAAACCATAATTTTTTACTGTGATGACTTTGGAGGTTCTCATGGCACTATAATTGTGAA--GACAAGGTCAAATT-AGTG-----attata-aaa----aa----tatatatattcacatttaaagtttaaaaaaa
i canFam3.chr18                C 0 C 0
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=4784.000000
s hg38.chr14_KI270725v1_random    124699 7 +    172810 ----CCTAAGT
s panTro4.chrUn_GL393527          288683 7 +    341619 ----CCTAAGC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5695054 7 +  72422247 ----CCTAAAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44147397 7 -  99891981 ----ACTTAAC
i nomLeu3.chr17                C 0 I 2
s rheMac3.chr3                 124571839 7 - 198365852 ----CCTAGCC
i rheMac3.chr3                 C 0 I 1
s macFas5.chr3                 125023308 7 - 192294377 ----CCTAGCC
i macFas5.chr3                 C 0 I 1
s papAnu2.chr3                 122285758 7 - 180432695 ----cctagcc
i papAnu2.chr3                 C 0 I 1
s calJac3.chr8                  20086282 7 + 128169293 ----CCTAACC
i calJac3.chr8                 C 0 I 1
s canFam3.chr18                  4107361 7 +  55844845 aaCAACT----
i canFam3.chr18                C 0 C 0
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121541799 10 - 127223203 I

a score=662041.000000
s hg38.chr14_KI270725v1_random    124706 222 +    172810 GGCAGTGTCACAATTTCTTCTTTTTAGTTTACATGGTTTCTTAAATGCCTACAATTATTTTAAAGGAAGCCTTGAGTCTAGGAAAAATTGAGACATATGGAATAAATTACTAACCCATTTCTCCTTGAAATCCATTAGATGATTGATGATTTTTTCACATAT-ATTTCTGAACTGAAAAGCTAGTTGGGAATTATTTTTATAAGGATATCCTTATGTAATATT
s panTro4.chrUn_GL393527          288690 221 +    341619 GGCAGTGTCACAATTTCTTCTTTTTAGTTTACATGGTTTCTTAAACGCCTAAAATTATTTTAAAGAAAGCCTTGAGTCTAGGAAAAATTGAGACATACAGAATAAATTACTAACCCATTTCTCCTTGAAATCCATGAGATGCTTGATGATTTTT-CACATAT-ATTTCTGAATTGAAAAGCTAGTTGCGAATTATTTTTATAAGCATATCCTTATGTAATATT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5695061 221 +  72422247 GGCAGTGTCACAATTTCTTCTTTTTAGTTTACATGGTTTCTTAAATGCCTACAATTATTTTAAAGGAAGCCTTGAGTCTAGGAAAAATGGAGACATATGGAATAAATTACTAACCCATTTCTCCTTGAAATCCATTAGATGCTTGATGATTTTT-CACATAC-ATTTCTGAATTGAAAAGCTAGTTGTGAATTATTTTTATAAGCATATCGTTATGTAATATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44147406 221 -  99891981 GGCAGTGTCACAATTTCTTCTTTTTAGTTTACATGGTTTCTTAAATGCCTACAATTGTTTTAAAGGAAGCCTTGTGTCTAGGAAAAATTGAGACATATGGAATAAATTACTAACCCATTTCTCCTTGAAATCCATTAGATGCTTGATGATTTTT-CATATAT-ATTTCTGAATTGAAAAGCTAGCTGTGAATTATTTTTATAAGCATATCCTTATGTAATATT
i nomLeu3.chr17                I 2 C 0
s rheMac3.chr3                 124571847 210 - 198365852 GGCAGTGACAAAATATCTTCTTTTGAGTCTACATGATTTCTCAAATGCCTACAATTATTTTAAAGGAAGTCTTGCATCTAGGAAAAATTGAGACATATGGAATAAATTACTAACCCATTTCTTCTTGAAATCCATTAAAGGCTTGATGATT-------------TTTCTGAATTGAAAAACTAGTTGTGAATTATGTTTATAAGCATATCCTTATGTAATATT
i rheMac3.chr3                 I 1 C 0
s macFas5.chr3                 125023316 210 - 192294377 GGCAGTGACAAAATATCTTCTTTTGAGTCTACATGATTTCTCAAATGCCTACAATTATTTTAAAGGAAGTCTTGCATCTAGGAAAAATTGAGACATATGGAATAAATTACTAACCCATTTCTTCTTGAAATCCATTGAAGGCTTGATGATT-------------TTTCTGAATTGAAAAACTAGTTGTGAATTATGTTTATAAGCATATCCTTATGTAATATT
i macFas5.chr3                 I 1 C 0
s papAnu2.chr3                 122285766 221 - 180432695 ggcagTGACacaatatcttcttttgagtCTACATGATTTCTTAAATGCctacaattattttaaaggaagTCTTGCATCTAGGAAAAATTGAGACATACAGAATAAATTACTAACCCATTTCTTCTTGAAATCCGTTAGAGGCTTGATGATTTTT-TGCATAC-ATTTCTGAATGGAAAAACTAGTTGTGAATTATGTTTATAAGCGTATCcttatgtaatatt
i papAnu2.chr3                 I 1 C 0
s chlSab2.chr21                121541809 217 - 127223203 GGCAGTGACACAATATCTTCTTTTGAGTCTACATGATTTCTTAAATGCCTACAATTATTTTAAAGGAAGTCTTGCATCTAGGAAAAATTGAGACATATGGAATAAATT----ACCCATTTCTTCTTGAAATCCTTTAGAGGCTTGATGATTTTT-CACATAC-ATTTCTGAATTGAAAAACTAGTTGTGAATTATGTTTATAAGCATATCCTTATGTAATATT
i chlSab2.chr21                I 10 C 0
s calJac3.chr8                  20086290 217 + 128169293 CGCAGTGTCACAATATCTTC-TTTGAGTTTACATGGTTTCTTAGATGCCTACAATTATTTTAAAGGAGGTCTTGAGTCTAGGAAAAATGGAGACGT--GGAATAAATTATTAACCTATTTCTCCTTGAAATCCGTTAGATACTTGGTGATTTTT-CACATAC-ATTCCTGAATTGAAAAACTAATCATGAATTAT-TTTATAAACATATCCTTATGTAATATT
i calJac3.chr8                 I 1 C 0
s canFam3.chr18                  4107368 215 +  55844845 AGTTGT-------TATCCTCTTTTGAGTTAACATCGGCTCTTGAAT-CTCATGATTATTTTAAGGGAGGCCCTGGTTCCAGGAAAAATTGTGATATGCTGAATAAGTTATTAACCTATTCATCATTAGAAAATTCTAGATGCTTGAGGATTTTTACATATGTAATCTCTGATTTAAAAAAATCATCATGGATTCATTCTATAAATATATTATTATGTAACATT
i canFam3.chr18                C 0 I 140
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=26752.000000
s hg38.chr14_KI270725v1_random    124928 9 +    172810 TTGTTTCTA
s panTro4.chrUn_GL393527          288911 9 +    341619 TTGTTTTTA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5695282 9 +  72422247 TTATTTTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44147627 9 -  99891981 TTGTTTTTA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124572057 9 - 198365852 TTCTTTTTA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125023526 9 - 192294377 TTCTTTTTA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122285987 9 - 180432695 ttcttttta
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542026 9 - 127223203 TTCTTTTTA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20086507 9 + 128169293 TTATTTTTA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4107723 9 +  55844845 ttgttccca
i canFam3.chr18                I 140 I 116
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=354227.000000
s hg38.chr14_KI270725v1_random    124937 118 +    172810 ACAGAGAATTGAATGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAGCAATTATTTCACAAGGAAACCATGTGTATGTTGACACGACATTTTAAAATCTAGATTTTAAAATAG
s panTro4.chrUn_GL393527          288920 118 +    341619 ACAGTGAATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAGCAATTATTTCACAAGGAGAATATGTGTACTTTGACACGACATTTTAAAGTCTAGATTTTAAAATAG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5695291 118 +  72422247 ACAGTGAATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGTATAAAAAGCAATTATTTCACAAGGAGAACACGTGTATATTGACACGACATTTTAAAATCTAGATTTTAAAATAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44147636 118 -  99891981 ACAGTGAATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAGCAATTATTTCACAAGGAGAACATGTATATGTTGACAGGACATTTTAAAATCTAGATTTTAAAATAG
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124572066 117 - 198365852 ACAGTGAA-TGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAGCAATTATTTCACAAGGAGCACATGTATATGTTGACATGACCTTTTAAAATCTAGATTTTAAAATAG
i rheMac3.chr3                 C 0 M 580
s macFas5.chr3                 125023535 118 - 192294377 ACAGTGAATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAGCAATTATTTCACAAGGAGCACATGTATATGTTGACATGACCTTTTAAAATCTAGATTTTAAAATAG
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122285996 118 - 180432695 acagtgaATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGaataaaaagcaattattttacAAGGAGCACATGTATATGTTGACATGACCTTTTaaaatctagattttaaaatag
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542035 113 - 127223203 ACAGTGAATTGAAGGTTTAAAG---------ATTATTCTATCCAGAGAATAAAAAGCCATTATTTCACAAGGAGCACATGTATATGTTGACATGACCTTTTAAAATCTAGATTTTAAAATAG
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20086516 110 + 128169293 TCAGCGAATTAAAGGTTTAAAAAT----CAAATTATTATATACAGAGAATAAAAAGCAATTATGTCACAAGGAGCACCTGTATATGTTGACATGGC--------ATGTAGATCTTTAAATAG
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4107848 115 +  55844845 AAAGAGAACTGAAGGTGGAAGATTAACCTAACTTCTTCTATTTAAAGAATAAAAAGCAATTATTTCACAAGCAAAAGAGGTATAGGTTGACAAGGTATGTAGATAT-----TTTTAAAGT--
i canFam3.chr18                I 116 C 0
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=1085477.000000
s hg38.chr14_KI270725v1_random    125055 439 +    172810 GTCCCATATAATTTTGAGTCAATTAGAATATGTTTGTATCAGTCTGTCTACAGTTTTACACCTGTCAAAAGGTACTTGAACTAA-AAGAAGTACCTTGAACAATTTTGAAATTTATTATTCCTCTGAAACTGATTAAAAGAATTATGGTAGAGTGAA--ATTCTGATTGGCATAATTTGGGAGAGAAATTATTCCTTGGAGATCAACCTCTGCCAAGATACTTTATAATGACATTGAGACTTTTTGATTTACAAAACTTGTTATATAAAAAATACTAAGAT-GATGACAGATAATACACAGA--CTAATTAAAATTGT-ACTAGAATTAATTGTCTAAATAAATTACAAGGGTACGTCGTACATCTAAATGTATGTTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTGCTTTTGCTTTAGTTTGTAAAACGTTCTTATTTT-
s panTro4.chrUn_GL393527          289038 441 +    341619 GTCCCATATACTTTTGTGTCAATTAGAATATGTTTGTATCAGTCTGTCTACAATTTTACACCTGTCAAAATGTACTTGAACTAC-AACAACTACCTTGAACAATTTTGAAATTTATGATTCCTCTGAAACTGATTAAAAGAATTATGGTAGAGTGAA--ATTCTGATTGACATAATTTGGGAGAGAAATTATTCCTTGGACATCAACCTCTGCCAAAATAGTTTATAATGACATTGGGGCTTTTTGATTTACACAATTTGTTATATAAAAAATACTAAGAC-GATGGCAGATAATACACAGAATTTAATTAAAATTGT-ACTACAATTAAATGTCTAAATAAATTAGAAGGGTACATGGTACATCTATTTGTATGTTTATATGTTTTATTTGTGCATTTTTTTCCTAGGGTTTCTTTTGCTTTAGTTTGTAAAACGTTCTTATTTT-
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5695409 441 +  72422247 GTCCCATATACTTTTGAGTCAATTAGAATATGTTTGTATCAGTCTGTCTACAGTTTTACACCTGTCAAAATGTACTTGAACTAC-AACAAGTACCTTGAACAATTTTGAAATTTATTATTCCTCTGAAACTGATTAAAAGAATCATGGTAGAGTGAA--ATTCTGATTGGCATAATTTGGGAGAGAAATTATTCCTTGGAGATCAACCTCTGCCAAGATAGTTTATAATGACATTGAGACTTTTTGATTTACAAAATTTGTTACATAAAAAATACTAAGAC-GATGACAGATAATACACAGACTTTAATTAAAATTGT-ACTAAAATTAAATGTCTAAATAAATTAGAAGGGTATGTGGTACATCTAACTGTACGTTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTGCTTTTGCTTTAGTTTGTAAAACGTTCTTATTTT-
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44147754 438 -  99891981 GTCCCATATATTTTTAAGTCAATTAGAATATGTTTGTATCAGACTGTCTACAGTTTTAAACCTGTCAAAATGTACTTGAACTAC----AAGTACCTTGAACAATTTTGAAATGTATTATTCCTCTGAAACTGATTAAAAGAATTATGATATAGTGAA--ATTCTGATTGGCATAATTTGGGAGAGGAATTATTCCTTGGAGATCATCCCCTGCCAACATAGTTTATAATGACATTGAGACTTTTTAATTTATAAAATTTGTTATATAAAAAATACTAAGAC-GATGACAGATAACGCACAGACTTTAATTAAAATTGT-ACTAAAATTAAATGTCTAAATAAATTAGAAGGGTACGTGGTACATCTAATTGTATGTTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTGTTTTTGCTTTAGTTTGTAAAACGTTCTTATTTT-
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125023653 436 - 192294377 ATCATATATATTTTTGAGTCAATTAGAATATGTTTGTATCAATCTGTCTACAGTTTTACACCTGTAAAAATGTACTTGAACTAC-AACAAGTACCTTGAACAATTTTGAAATTTATTATTCATCTGAAACTGATTAAAAGAATTATGGTATAGTGAA--ATTCTGATTGGCATAATTTGGGAGAGGAATTATTCCTTGGAGATCAACACCTGCCAAGATAATTTATAATGACATGGAGACTTTTTGATTTACAAAATTTGTTATAT-AAAAATACTAAGAA-GATGATAGATAATACACAGACT----TTAAAATTGT-ACTAAAATTAAATGTCTAAATAGATTAGAAGGGTATGTGGTACATCTAATTGTATATTTGTATATTTTATTTGTGCATTTTATTCCTAGGGTTGTTTTTGCTTTAGTTTGTAAGACGTTCTTATTTT-
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122286114 432 - 180432695 attctatatatttttgagtCAATTAGAATATGTTTGTATCAATCTGTCTACAGTTTTATACCGGTAAAAATGTACTTGAACTAC-AACAAGTACCTTGAACAATTTTGCAATTTATTATTCATCTGAAATGGATTAAAAGAATTATGGTATAGTGTA--ATTCTGATTGGCATAATTTGGGAGAGGAATTATTCCTTGTAGATCAACCCCTGCCAAGATAATTTATAATGACATTGAGActttttgatttataaaatttgttatat-aaaaatactaaGAA-GATGATAGGTAATATACAGACT----TTAAAATTGT-ACTAAAATTAAATGTCTAAATAAATTAGAAGG----GTGGTACAtctaattgtatatttatatattttatttgtgcattttattcctagggttgtttttgctttagtttgtAAGACGTTCTTATTTT-
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542148 432 - 127223203 ATCCTATATATTTTTGAGTCAATTAGAATATGTTTGTATCAATCTGTCTACAGTTTTACACCTGTGAAAATGTACTTGAACTAC-AACAAGTACCTTGAACAATTCTGAAATTTATTATTCATCTGAAACTGATTAAAAGAATTATGGTATAGTGAA--ATTCTGATTGGCACAATTTGGGAGAGGAATTATTCCTTGGAAATCAACCCCTGCCAAGATAATTTATAATGACATTGAGACTTTTTGATTTACAAAATTTGTTATAT-AAAAATACTAAGAA-GATGATAGATAATACACAGACT----TTAAAATTGT-ACTAAAATTAAATGTCTAAATAAATTAGAAGG----GTGGTACATCTAATTGTATATTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTGTTTTTGCTTTAGTTTGTAAGACGGTCTTATTTT-
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20086626 438 + 128169293 ATCCCATATATTTTTGGGTCAATTTCAATATGTTTCTATCAGTCTGTCTACAGTTTTACACCTGTCAAAATGTACTTGAACTATAAACAAGTAACTTGAACAATTTTGAAATTTATTATTCCTTTGAAACTGATTGAAAGAATTATGTTATAGTGAA--ATTCTGATTGGCCTAATTTGGGAGAGAGATTATTCCTTAGAGGTCAACCCCTGCCAAGATAGTTTATAATGACATTGAGACTTTTTGatttat--aattttttatataaaaattaCTAAGAAGGATAATAGATAATACACAGACTTTACTTAAAATTGT-TCTAAAATTAAATGTCTAAATAAATTAGAAGGGTACGTGGTACACCTAATTGTATGTTTGTATATTTTATTTGTG--TTTTATTCCTA-GGTGTTTTTTGCTTTGGTGTTTAAAACGTTCTTACTTt-
i calJac3.chr8                 C 0 I 553
s canFam3.chr18                  4107963 431 +  55844845 TCCATATATATTTTTGAGTCAATTAAAATGTTTTTTAA--AGTCTGTCTGCAGTTTTATAACTGTC-AAATGTGCTTGAACTAGAAATAAGTGCCTTAAACAATTTTGAAATTTATTATTCCCCTGACACTGATTGAAAGAATTATGGGATGGTGAAATATTCTGAATGACACAGTTTAGGACAGGAATAATTCCCCAGAGTTCAAGCCCTGCCAAGATAGTTTACAGTGACATAGAAACTTTTGAATATAAAACATTTTTGAGAAAAAGAGCATTAAGAA--TTAATAGATAAAATAT--TTTTTAACTAAAAATGTAACTAAACATAGGTGTCTAAAAAAATTGAATAGGAATGTTGTGCCT---------TAATTGTGTATTTTATTGATGCATTTTAAGTCTAGGTGATTTTTTTCTTTTGTTTATGAAAGTATGTTGCTTTT
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124572183 580 - 198365852 M
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=50262.000000
s hg38.chr14_KI270725v1_random    125494 26 +    172810 TATGATA-ATGTAGTATATACTAAATA
s panTro4.chrUn_GL393527          289479 26 +    341619 TAAGATA-ATGTAGCACATACTAAATA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5695850 26 +  72422247 TATGATA-AGGTAGTATATACTAAATA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44148192 26 -  99891981 TATGATA-ATGTATTATATACTAAATA
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125024089 26 - 192294377 TATGATA-ATGTATTATATACAAAATA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122286546 26 - 180432695 TATGATA-ATgtattatatacaaaata
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542580 26 - 127223203 TATGATA-ATGTATTATATGCAAAATA
i chlSab2.chr21                C 0 C 0
s canFam3.chr18                  4108394 27 +  55844845 TATAATAGATGTATTATATGCCAAATA
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124572183 580 - 198365852 M
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e calJac3.chr8                  20087064 553 + 128169293 I

a score=393089.000000
s hg38.chr14_KI270725v1_random    125520 165 +    172810 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGCTATTGTCAACCAAATAAA------AATCGTGCAATCTCTAAGTACATGAACGATGTATTATTTGTACAGCAT-GTACAATGTTTATGCTTCACAGGGTGAGGTAGAGACTGT-AAAACATTGAACCTGGGA
s panTro4.chrUn_GL393527          289505 163 +    341619 AAGAAAAATCAGGAAATAGAAAATGAAGAA----AACATTAGCTATTGTCAACCAGATAAA------AATTGTGAAATCTCTACACACATGAACTATGTAATATTTGTACAACATAGTACAATGTTTATGCTTCACTGGGTGAGGTAGAGACTGC-AAAACCTTGAACTTGGGA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5695876 162 +  72422247 AAGAAAAATCAGGAAATAGAAAATGAAGAA----AACATTAGCTATTGTCAACCAAATAAA------AATTGTGCAATCTCTAAGCACATGAACTATGTATTATTTGTACAGCAT-GTACAATGTTTATGCTTCACAGGGTGAGGTACAGACTGC-AATATATTGAACCTGGGA
i ponAbe2.chrUn                C 0 M 171
s nomLeu3.chr17                 44148218 165 -  99891981 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGCTATTGTCAACCAAATAAA------AATTGTGCAATCTCTAAGCACATGAACTATGTATTATTTGTACAGCAT-GTACAATGTTTATGCTTCACAGGGTGAGGTAGAGACTGC-AAAATATTTAGCCTGGGA
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125024115 165 - 192294377 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGCTATTGTCAACCAAATAGA------AATTGCACAGTCTCTAAGCACATGAACTTTGTATTATTTGTACAGTAT-GTACAATATTTATGCTTCACAGGGTAAGGTAGAGACTGC-AAAACATTTAACCTGGGA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122286572 165 - 180432695 aagaaaaatcaggaaatagaaattgaagaag-aaaacattagctTTTGTCAACCAAATAGA------AATTGCACAGTCTCTAAGCACATGAACTCTGTATTATTTGTACAGTAT-GTACCATATTTATGCTTCACAGGGTAAGGTAGAGACTGC-AAAACATTTAACCTGGGA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542606 165 - 127223203 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGTTATTGTCAACCAAATAGA------AATTGCACAGTCTCCAAGCACATGAACTCTGTATTATCTGTACAGTAT-GTACAATATTTATGCTTCACAGGGTAAGGTAGGGACTGC-AAAACAGTTAACCTGGGA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20087617 161 + 128169293 AAGAAAAATCAGAAAATAAAACATAAAGAAGAAAAACATTAGCTATTGCCAACCAAATAAA------AACTGCACAATCTCTAAACCCATGAACTATGTATTATTTGTACAGCAT-ATACAATGTTCATGCTTCCATGGGTGAGGCAGAGACTGCAAAAACATTTAAC------
i calJac3.chr8                 I 553 C 0
s canFam3.chr18                  4108421 164 +  55844845 AAGAGAAATTAGAATATAGAAAATGAAGAAGAAAAATATTAGCTACTGTCAACCAACCAAAGACAATAATTGCATGATCTATGAGCACATAAATTCTGT----CTTCCACAGCAT-ATCCAATGTTTATGCTTAGCAGGATGAG----AGGCTGC-AAAAAATTAAATTCTAGC
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124572183 580 - 198365852 M
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=79921.000000
s hg38.chr14_KI270725v1_random    125685 55 +    172810 AAAATAAGAAAGTAAGGACATTTTCACAACATATTAATATTATAGAAAATGTTGA-
s panTro4.chrUn_GL393527          289668 52 +    341619 CAAATAAGAAAGTAAGGAAATTTTCACAACATAATAATAT---AGAAAATGTTGA-
i panTro4.chrUn_GL393527       C 0 C 0
s nomLeu3.chr17                 44148383 55 -  99891981 CAAATAAGAAAGTAAGGACATTTTCACAATATATTAATATTATAGAAAATGTTGA-
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125024280 55 - 192294377 CAAATAAGAAAGTAAGGAAATTTTCACAATATATTAATATTATAGAAAATGTTGA-
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122286737 55 - 180432695 CAAATAAGAAAGTAAGGAAATTTtcacaatatattaaaattatagaaaatgttgA-
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542771 55 - 127223203 CAAATAAGAGAGTAAGGAAATTTTCACAATATATTAAAATTATAGAAAATATTGA-
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20087778 35 + 128169293 --------------------GTTTCACAATGTATTAGAATTATAGAAAATGTTAA-
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4108585 47 +  55844845 --------AACACTAGAAAATTTT-GTGAAATATTAGTATTATAGAAAATTCTGGA
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124572183 580 - 198365852 M
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e ponAbe2.chrUn                  5696038 171 +  72422247 M

a score=19602.000000
s hg38.chr14_KI270725v1_random    125740 11 +    172810 ACTTAACAGTT-------
s panTro4.chrUn_GL393527          289720 11 +    341619 ACTTAACAGTT-------
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5696215 11 +  72422247 ACTTAACAGTT-------
i ponAbe2.chrUn                M 171 C 0
s nomLeu3.chr17                 44148438 11 -  99891981 ACTTAACAGGT-------
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125024335 11 - 192294377 ACTTAACAATT-------
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122286792 11 - 180432695 ACTTAATAATT-------
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542826 11 - 127223203 ACTTAATAATT-------
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20087813 11 + 128169293 ACTTAACAGTT-------
i calJac3.chr8                 C 0 I 319
s canFam3.chr18                  4108632 11 +  55844845 -------AGTTTTTTTTG
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124572183 580 - 198365852 M
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=98780.000000
s hg38.chr14_KI270725v1_random    125751 42 +    172810 AAGATACAAGTAGTGAAAAATGATAG----TATTTAAGGAGA-TCTA
s panTro4.chrUn_GL393527          289731 42 +    341619 AAGGTACAAGTAGTGAAAAATGATAG----TATTTAAGGAGA-TCTA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5696226 43 +  72422247 AAGATACAAGTAGTGAAAAATGATAG----TATTTAAGGAGATTCTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44148449 42 -  99891981 AAGATAAAAGTGGTGAAAAATCATAG----TATTTAAGGAGG-TCTA
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125024346 42 - 192294377 AAGATAAAAGTAGTGAAAAATGATAA----TATTTAAGGAGA-TCTA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122286803 42 - 180432695 AAGATAAAAGTAGTGAAAAATGATAG----TATTTAAGGAGA-TCTA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542837 42 - 127223203 AAGATAAAAGTAGTGGAAAATGATAG----TATTTAAGGAGA-TCTA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20088143 39 + 128169293 aaGATGAAAGCAATAAGAA---ATAT----TATTTAAGGGGC-TCTA
i calJac3.chr8                 I 319 C 0
s canFam3.chr18                  4108643 46 +  55844845 AAAATCAAAACAGTGAGAAATGATAGATATTATTTAAAAAGA-TGTA
i canFam3.chr18                C 0 I 888
e rheMac3.chr3                 124572183 580 - 198365852 M
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=20349.000000
s hg38.chr14_KI270725v1_random    125793 12 +    172810 GAAAATTTAATC
s panTro4.chrUn_GL393527          289773 12 +    341619 GAAAATTTAATC
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5696269 12 +  72422247 GAAAATTTAATC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44148491 12 -  99891981 GAAAGTTTAATT
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125024388 12 - 192294377 GAAATATTAATC
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122286845 12 - 180432695 GAAATATTAATC
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542879 12 - 127223203 GAAATATTAATC
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20088182 12 + 128169293 GATAATTGAATC
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4108689 888 +  55844845 I
e rheMac3.chr3                 124572183 580 - 198365852 M
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=507808.000000
s hg38.chr14_KI270725v1_random    125805 176 +    172810 TATATCAGTAATGTGTGAGAAGTATTAGAATAATGCTTGTATTTCTGGATTGGCATCGATTTCTATTGAGACTGGAAATGTAACAGAAGTGAGCAAAAAAGAATTTAAATTGTGGATACTTGAGTTTTATACCTAGGAGTTCGAGAAATACATTTTGTTACTATCAAAGCAGTTGG
s panTro4.chrUn_GL393527          289785 176 +    341619 TATACCTGTAATGTGTGAGAAGTATTAGAATAATGCTTGTATTTCTGGATTGGCATCGATTTCTATTGAGACTGGAAACATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATTCTTGAGTTTTATACCTAGGAGTTCGAGAAATACATTTTGTTACTATCAAAGCAGTTGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5696281 176 +  72422247 TATATCTGTAATGTGTGAGAAGTATTAGAATAATGCTTGTATTTCTGGATTGGCATCGATTTCTATTGAGACTGGAAACATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATACTTGAGTTTTATACCTAGGAGTTCGACAAATACATTTTGTTACTATCAAAGCAGTTGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44148503 176 -  99891981 TATATCTGTAATGCATGAGAAGCATTAGAATAATGCTTGTATTTCTGGATTGGCATTGATTTCCATTGAGACTGGAAAGATAATAAAAGTGATGGAAAAAGAATTTAAATTGTGGATATTTGAGTTTTATACCTAGGAGTTCGAGAAATATATTTTGTTACTATCAAAGCAGTTGG
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124572778 176 - 198365852 TATATCTGTAATGTGTGAGAAGCATTAGAATAATGCTTTTATTTCTGGATAGGCATTGATTTCTATTGAGACTGGAAGCATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATATCTGAGTTTTATACCTAGGAGTTTGAGAAATATATTTTGTTACTATCAAAGCAGTTGA
i rheMac3.chr3                 M 580 C 0
s macFas5.chr3                 125024400 176 - 192294377 TATATCTGTAATGTGTGAGAAGCATTAGAATAATGCTTGTACTTCTGGATAGGCATTGATTTCTATTGAGACTGGAAGCATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATATTTGAGTTTTATACCTAGGAGTTTGAGAAATATATTTTGTTACTATCAAAGCAGTTGA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122286857 176 - 180432695 TATATCTGTAATGTGTGAGAAGCATTAGAATAATGCTTGTATTTCTGGATTGGCATTGATTTCGATTGACACTGTAAACATAATAGAAGTGagggaaaaagaatttaaattgtgGATATTTGAGTTTTATACCTAGGAGTTcgagaaatatattttgttactATCAAAGCAGTTGA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121542891 176 - 127223203 TATATCTGTAATGTGTGAGAAGCATTACAATAATGCTTGTATTTCTGAATTGGCATTGATTTCTATTGAGACTGGAAACATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATATTTGAGTTTTATACCTAGGAGTTTGAGAAATATATTTTGTTACTATCAAAGAAGTTGA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20088194 164 + 128169293 TACATCTGTAATGTTTGAAAAGCATTAG------------ATTTCTGGATTTGCGTTGATATCTATTGAGACTGGGAACATAATGGAAATGAAGGAAAAATCATTTAAATTGTGGATATTTGAGTTTTATATGTAGGAGTGTGAGAAATATATTTTGTTACTATCAAAGCAGTTGG
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4108689 888 +  55844845 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=1484870.000000
s hg38.chr14_KI270725v1_random    125981 492 +    172810 CACAAGAGTGTACAAAATTCCCTAATTGTGTCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAACAGAAATAGC----AAAAAA------GCACAAATAAA---TTTTACCTGTATTTTTAAGTAAAAGCCAATTAGAGAAGGAAAACATGAAA-TTTGTGTTTTATCAAAATTTTTC--TCTTTCTCA---TAATATAGTTGAAAATATTACTGCAAAAAA-TTTGAAGCACTGGTATGTTCAC-AAA-----AAAAGT--------AAAATATAAGGTC--------------------AAAACCATGGGAATGCAGGGAGCAGACAA--------AATACACCTAAACACGGAAACTGATTTTGCCCTACAGACATGTAGCAAAATGAATGAGTGCAGA-TT-CCTACTGTCATACATCACATAGGATAGTAAAGAAATACATAGTTTTTCCCAAGAT-AGGGCATCACACAGAAGCTCTTCCC-TAAAGCTAGGACCAAAATTTATATCCTCAGTATAAAGAAGAATCAGAGGTAAATTAGTCCCATT
s panTro4.chrUn_GL393527          289961 493 +    341619 CACAAGAGTGTACAAAATTCCCTAATTGTGTCTATGTGGAGAAGACATAGACAAACAGAGAATAGCCAAACAGAAATAGC----CAAAAA------GCACAAATAAA---TTTTACATGTATATTTAAGTAAAAGCCAATTAGAGAAGGAAAACATGAAA-TTTGTGTTTTATCATAATTTTTC--TGTTTCTCA---TAATATAGTTGAATATATTACTGGAAAAAA-CTTGAAGCACTGGTATGTTCAC-AAAT----AAAAGT--------AAAATATAAGGTC--------------------AAAACCATGGGAATGCAGGGAGCAGACAA--------AATATAACTAAACACAGAAACTGATTTTGCCCTACGGACATGTAGCAAAATGAATGAGTGCAGA-TT-CCTACTGTCATACATCACATAGGACAGTAAAGAAATACATAGTTTTTCCCAAGAT-AGGGCATCACACAGGAACTCCTCCC-TAAAGCTAGGACCAAAATTTCTATCTTCAGTATAAAGAAGAATCAGAGGTAAATTAGTCCCATT
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5696457 493 +  72422247 CACAAGAGTGTACAAAATTCCCTAATTGTGTCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAACAGAAATAGC----AAAAAA------GCACAAAAAAA---TTTTACCTGTATTTTTACGTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTATAAAAATTTTTC--TGTTTCTCA---TAATATAGTTGATTATATTACTGGAAAAAA-ATGGAAGCATTGGTATGTTCAC-AAAA----AAAAGT--------AAAATACAAGGTC--------------------AAAACCATGGGAATGCAGGGAGCAGACAA--------AATATACCTAAACACCGAAACTGATTTTGCCCTATGGACATGTACCAAAATGAATGAGTGCAGA-TT-CCTACTGCCATACATCACATAGGACAGTAAAGAAATACATAGTTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAAGCTAGAACCAAAATTTCTATCCCCAGTATAAAGAAGAATCAGAGGTAAATTAATCCCATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44148679 477 -  99891981 CACAAGAGTGTACAGAATTCCCTAGCTGTGGCTATGTGG---AGACATAGACAAACAGAGAATACCAAAACAGAAATAAC----AAAAAA------GCAGAAATAAA---TTTTACCTGTAT------GTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTATCAAAATTTTTC--TCTTTCTTA---TAATATAGTTGATTATATTACTGGAAAAAA--TTGAAGCATTGGAATGTTCAC-ACAA----AAAAGT--------AAAATATAAGGTC--------------------AAAACCATGGGAATGCAGGGAGCAGACAA--------AA------TAAACACTGAAACTGATTTTGCCCTATGGACATGTACCAAAAAGAATGAGTGTAGA-TT-CCTACTTTCATACATCACATAGGACAGTAAAGAAATATATAGTTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAAGCTAGGACCAAAATTTATATCCTCAGTATAAGGAAGAATCAGAGGCAGATTAGTCCCATT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124572954 493 - 198365852 CACTAGAGTGTACAAAACTCCCTAATTGCGGCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAGCAGAAATAGC----AAAAAAAAGCACAAACAAATAAA---TTTTACCTGGAT------GTAAAAGCCAATTGGAGTAGGAAAACATGAAA-TTTGTGTTTTATCAAAATTTTTC--TCTTTCTTA---TAATATAGTTGATTATATTACTGGAAAAAA--TTGAAGCATTGGTATGTTCAC-AAAA----AAAGGT--------AAAATATAAGGTC--------------------AAAACCATGGGAATGCAGGGAGCAGACAA--------AATATACCTAAACACCGAGACTGATTTTGCCCTACGGACATGTACCAAAATGAATGAGTGTGGATTT-CCTACTGTCATACATCACATAGGACAGTAAAGAAATATATAGCTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAAGCTAGGACCAAAATTTATATTCTCAATATGAAGAAGAATCAGAGGTAAATTAGTCCCATT
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125024576 493 - 192294377 CACTAGAGTGTACAAAACTCCCTAATTGCGGCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAGCAGAAATAGC----AAAAAAAAGCACAAACAAATAAA---TTTTACCTGTAT------GTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTATCAAAATTTTTC--TCTTTCTTA---TAATATAGTTGATTATATTACTGGAAAAAA--TTGAAGCATTGGTATGTTCAC-AAAA----AAAGGT--------AAAATATAAGGTC--------------------AAAACCATGGGAATGCAGGGAGCAGACAA--------AATATACCTAAACACCGAGACTGATTTTTCCCTACGGACATGTACCAAAATGAATGAGTGTGGATTT-CCTACTGTCATACATCACATAGGACAGTAAAGAAATATATAGCTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAAGCTAGGACCAAAATTTATATTCTCAATATGAAGAAGAATCAGAGGTAAATTAGTCCCATT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122287033 493 - 180432695 CACTAGAGTGTACAAAATTCCCTTATTGCGGCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAgcagaaatagc----aaaaaaaaaaaagcacaaataaa---tttTACCTGTAT------GTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTAtcaaaatttttc--tctttctta---taataTAGTTGATTATATTACTGGAAAAAA--TTGAAGCATTGGTATGTTcac-aaaa----aaaggt--------aaaatataaggTC--------------------AAAACCATGGGAATGCAGGGAGCAGACAA--------AATATACCTAAACACCGAAACTGATTTTGCCCTACGGACATGTACCAAAATGAATGAGTGTGAATTT-CCTACTGTCATACATCACATAGGACAGTAAAGAAATATATAGCCTTTCCCAAGAT-AGGGCAACACACAGGAGCTCCTCCC-TAAAGCTAGGACCAAAATTTATATTCTCAATATGAAGAAGAATCAGAGGTAAATTAGTCCCATT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121543067 493 - 127223203 CACTAGAGTGTACAAAATTCCCTAATTGCGGCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAA---AAAAATAGCAAAAAAAAAAAAGCACAAAGAAATAAA---TTTTACCTGTAT------GTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTAACAAAATTTT----TCTTTCTTA---TAATATAGTTGATTATATTACTGGAAAAAT--TTGAAGCATTGGTATGTTCACAAAAA----AAAGGT--------AAAATATAAGGTC--------------------AAAACCATGGGAATGCAGGGAGCAGACAA--------ACTATACCTAAACACCAAAACTGATTTTGCCCTACGGACATGTACCAAAATGAATGAGTGTGGATTT-CCTACTGTCATACGTCACATAGGACAGTAAAGAAAAATATAGCTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAACCTAGGACCAAAATGTATATTCTCAATATGAAGAAGAATCAGAGGTAAATTAGTCCCATT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20088358 477 + 128169293 -ACAACAGTATACAAAAGTCCCTAATTGTGGCTGTGTGGAGAAGACAT--------AGAGAATAGCAAAGCAGAAACAGC----AAAAAA------GCACAAATAAG---TTTTTCCTGTAT------ATAAAAGCCAATTAGAGTAGGAAAATATGAAA-TTTGCATTTTGTCAAAATTTTTC--TCTTTCTTA---AAATATAGTTGATTTTATTACTGGTAAAA---TTGAAGCATTGGTATGCTCAC-AAA-----AAAAGT--------AAAATATAAAGTC--------------------AAAACTATGGGAATGTAGGGAGCAGACAA--------AATATACCTAAACACTGAAACTGATTTTGTCCTACAGACATGTACCAAAATGAATGAGCATGGATTT-CCTACTGTCATACTTTACATAGGACAGTAAAGAAATATATAGCTTTCCCCAAGGA-AGGGCATCACACAGGAGCTCCTTCCATAAAGCTAGGACGAAAATTAACATCCTCAGTATAAAGAAAAATCAGAGGTAAATTAGTTGCATT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4109577 535 +  55844845 CAGAAAAGTATACAAAATTCCTTAAGTATGCCTGTGTGGAAAAGA-ATAAATGAGCAGAAAACGGAGGGGCAGAAATAGC----CAGA--------GCACAAAAAGAGATTTTTACTGGCAC------ATAAAAGCCAATGAGAGTAGGTAAATATGCGGTTTTGTGTTTTATCAAAATTTCTCTGTCTTTCTAATTCTGATATAGTTGACTCTGTGACTAGGAAAAAAAGAAAAGCATTAAGATTCTCAT-AAAGTAGTAAATGTTTTAGGCCAAAGTCTGAATTCTTCAGGGACCaagagaaaaaaaaaaaaaaagaaagaaagaaaaagaaaaagaaaaagaaaaCAACCTCACACTGGAACTGGTTTTGCCCTAAAGACATGTACTAAACTGAATAGGTTTGACTTTGCTTAGTGTCATGCAGCAGATAGAATAATAAGCAAATATTAAGCCTTTTCTAAGCTGAGAGCCACATAGAGGATCCTTTTCCATAAAG--AATTCTAAAGATTACA-CTTCATTGTAAAAATGAATCAGAAATAAATCAGCCCTGTT
i canFam3.chr18                I 888 I 189
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=2391753.000000
s hg38.chr14_KI270725v1_random    126473 812 +    172810 TCACATTCCCTGGAAATGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTTAAATGTGCAGTCCAAACATATGT-------------CCAAACACCTTTAGGCCAAGAATTAATATAATGTGGTCCCAGAATGGTGGTGCCTTTAGAAGACTCAC---AACAAATTCAAATTCTCTTTGGCAAATTTTCTTCTTACTAATATGCAAAAGTGCACAATAATAATTTTCAGAGAAAAATAAATCTTTGTCATTCAAAGGC-ATCTAAGTATGCAAGGAAATGATATTCTACCATTTGAAAGGAAAGCAGAAAAAGAGTACAAACCGATCCACAAAGGTTC--ATTAGTAGAAATATCACTGTTAGATTATAAAGCTCATTTAATTT----CAAGAAATTTTTTAAAAAATGAATATATTTTTAGGAGACT-AAAAAATTGATGTAGCAAATTTGAAAAGTAGTTTGt------atatag-tattttaaattaaaaactcaaaaatgaactcatcagattagacatggccatggtgagagttcat----------------------aaatatttcagaatgc-attacagaaaattttaaaaaatgcacaatgtggacagaatcatgaagagacatggaag----atacagtgagaaagtgtagc---atgtgtttagtgagtgttctcttagaagaag----ggaactgggaagggacaatatgtgatggtattttggct-------------------gaaagttctctagactcttgtaagacactaatccacatattcaaaaattctatgcatgctaagcaagctacagtggagataaacctac
s panTro4.chrUn_GL393527          290454 820 +    341619 TCGCATTCCCCGGAAATGGCAAATAAAAATGATTTGAGATTGGACGGATTTAAAGA-AACTCAATCGTTAATGATTTACAGCAACTAATTTAAAAATTGTTTAAATGTGCAGTCCAAACATACGT-------------CCAAACACCTTTAGGCCAAGAATTAACATGATGTGGTCCAAGAATGGTGGTGCCTTTAGTAGAATCAC--AAAAAAATTCAAATTCTCTTTGGCAAATTTTCTACTTACTAATCCGCAAAAGTGCACAAAAATAATTTTCAGAGAAAAATAAATATTTGTCATTCAAAGGC-ATCTAAGTATGCAAGGAAATGATATTCCACCATTTGAAAGGAAAGCAGAAAAAGAGTGCAAACACATCCACCAAGGTTC--ATTAGTAGAAATATCACGGTGAGATTATAAAGCACATTTGCTTT----CaaaattttttttaaaaaataaatatattGTTAGGAGACT-AAAAAATTCATGTAGCAAATGTGAAAAGTAGTTTGTATaaaaatatagttattttaaattaaaaactcaaaaatgaacccatcagattagacatggccaaggtgatagtacat----------------------aaatatttcagaatgc-attacggaaaattttaaaaaatgtaatatgtggacagaatgatgaagagacatggaag----atacagtgagaaagtgtagc---atgtgtttagagagtgttctcatagaagaag----ggaactgagaagggacaatatgtgatggtattttggct-------------------gagagttccctagatttttgtaagacactaatctgcatattcaaaaattccatgcatgctaagcaaactacaatggagataaacctac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5696950 816 +  72422247 TCACATTCCCTGAAAACGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGAAATTAATTTAAAAATTGTTTAAATGTGCAGTCCAAACATACgt-------------ccaaacacctttaggccaacaattaacataatgtggtcccagaatggtggtgcctttagtagactcac--aaaaaaattcaaattctctttggcaaattttcttcttactaatccacaaaagtgcacaaaaataattttcagagaaaaataaatatttgtcattcaaaggc-atctaagtacacaaggaaatgatattccatcatttgaaaggaaagcagaaaaagagtacaaacagatccacaaaggttc--attagtagaaatatca--gttagattataaagcacatttgcttt----aaaaaaatttaaaataaaatgaatatatttgtaggagact-aaaaaattgatgtagcaaatttgaaaagtagtttgtataaaaacatag-tattttaaattaaaaactcaaaaatgaactcatcagattagacatggccatggtgagagttcat----------------------aaatatttcagaatgc-attacaaaaaatttttaaaaatgcaaaatgtggacagaatcatgaagagacatggaag----atacagtaagaaagtgtagc---atgtgtttagtgagtgttctcatagaagaag----ggaactgggaagggacaatatgtgatggta-tttggct-------------------gaaagttctctagacttttgtaagacactaatccgcatgttcaaaaattccatgcatgctaagcaagctacattggagataaacctac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44149156 816 -  99891981 TAACATTTCCTGCAAATGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAATATTGTTTAATTGTGCGGTCCAAACATATgt-------------ccaaacacctttaggccaagaattaacataatgtggtcccagaatggtggtgcctttagtagactcac--aaaaaaattcaaattctctttggCAAATTTTTTTCCAAC-AATCCTCAAAAGTGCACAAAAATAATTTTCAAAGAAAAATAAATATTTGTCATTCAAAGGC-ATCTAAGTACACAAGGAAATGATATTCCACCATTTGAAAGCAAAGCAGAAAAAGAGTACAAACAGATCCACAAAGGTTC--ATTAGTAGAAATATCATTGTTAGATTACAAAGCACATTAGCTTT----AAAAAAATTTTTTAAAAAAC---CATATTTTTAGGGGACTAAAAAAATTGATGTAGCAAATTTGAAAAGTAGTTTGTGTaaaaatatag-tattttaaattaaaaactcaaaaatgaactcatcagattagacatggccatggtgagagttaat----------------------aaatatttcagaatgc-attacagataatttaaaaaaatgcaaaatgtggacagaatcattaagagacatggaag----atgcagtgagaaagtgtagc---atgtgtttagtgagtgttctcatagaagaag----ggaactgggaagggacaatatgtgatggtattttggct-------------------gaaagttctctagatttttgtaagacactaatctgcatattcaagaattcaatgcttgctaagcaagctacagtggagataaacctac
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124573447 821 - 198365852 TCACTTTCCCTGAAAATGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTTAAATGtgcagtccaaacatatgtcacttgggaagtccaaaacacctttaggccaagaattaacataatgtggtcccagaataggggtgcctttagtagactcat--gaaaaaattgaaattctctttggcatattttcctcatactaatcctcaaaagtgcacaaaaataattttctaagaaaaataaatatttatcattcaaaggc-ttctaagtacacaaggaaatgatattccactgtttgaaaggaaagcagaaaaagagtacaaacagatctgcaaaggttt--gttaccagaaatatcactgttagatcataaagcacatttgcttt-------aa--------aaaaaatgaacatatt-ttaggagactaaaaacatTGATGTAGCAAATCTGAAGAGTAGTTTGTATaaaaatacag-tattttaaattaaaaactcaaaaatgaactcatcagattagaaatggccatggtgagagttaat----------------------aaatatttcagaatgc-attacagataacttggaaaaatgcaaaatgtggacagaatcattaaaagacatggaagttttttgcagtgagaaaatgcagc---atgtatttagtgagtgttctcat---agaag----ggaactaggaagagataatatgtgatggtattttgact-------------------gaaagttctctagacttttgtaagacactaatccacatattcaaaaactcaacacatgctaagcaagttaca-tggagattaacctac
i rheMac3.chr3                 C 0 I 483
s macFas5.chr3                 125025069 820 - 192294377 TCACTTTCCCTGAAAATGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTTAAATGTGCAGTCCAAACATATGTCACTTGGGAAGTCCAAAACACCTTTAGGCCAAGAATTAACATAATGTGGTCCCAGAATAGGGGTGCCTTTAGTAGACTCAT--GAAAAAATTGAAATTCTCTTTGGCATATTTTCCTCATACTAATCCTCAAAAGTGCACAAAAATAATTTTCTAAGAAAAATAAATATTTATCATTCAAAGGC-TTCTAAGTACACAAGGAAATGATATTCCACTGTTTGAAAGGAAAGCAGAAAAAGAGTACAAACAGATCTGCAAAGGTTT--GTTACCAGAAATATCACTGTTAGATCATAAAGCACATTTGCTTT----AAAAA--------AAAAAATGAACATATT-TTAGGAGACTAAAAACATTGATGTAGCAAATCTGAAAAGTAGTTTGTATaaaaatacag-tattttaaattaaaaactcaaaaatgaactcatcagattagaaatggccatggtgagagttaat----------------------aaatatttcagaatgc-attacagataacttggaaaaatgcaaaatgtggacagaatcattaaaagacatggaag----ttgcagtgagaaaatgtagc---atgtatttagtgagtgttctcat---agaag----ggaactaggaagagataatatgtgatggtattttgact-------------------gaaagttctctagacttttgtaagacactaatccacatattcaaaaactcaacgcatgctaagcaagttaca-tggagattaacctac
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122287526 819 - 180432695 TCACATTCCCtgcaaatggcaaataaaaatgaCTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTAcagcaattaatttaaaaattgtttaaatgtgCAGTCCAAACATATGTCACTTGGGAAGTCCAAAACACCTTTAGGCCAAGAATTAACATAATGTGGTCCCAGAATAGTGGTGCCTTTAGTAGActcac--aaaaaaattgaaattctcTTTGGCATATTTTCTTCATACTAATCTTCAAAAGtgcacaaaaataattttctaagaaaaataaatatttatcattcaaAGGC-TTCTAAGTACACAAGGAAATGATATTCCACCATttgaaaggaaagcagaaaaagagtaCAAACAGATCTGCAAAGGTTT--GTTACCAGAAATATCACTGTTAGATCATAAAGcacatttgcttt-----aaaa--------aaaaaatgaacatatt-ttaggAGACTaaaaaaaTTGACGTAGCAAATCTGAAAAGTAGTttgtataaaaatacag-tattttaaattaaaaactcaaaaatgaaCTCATCAGATTAGACATGGCCATGGTGagagttaat----------------------aaatatttcagaatgc-aGTACAGATAATttggaaaaatgcaaaatgtgGACAGAATCATTAAAAGAcatggatg----ttgcagtgagaaAATGTAGC---ATGTATTTAGTGAGCGTTCTCAC---AGAAG----GGAACTAAGAAGGGATAATATGTGATGATATTTTGACT-------------------GAAAGTTCTCTAGACTTTTGTAAGACACTAATCCACATATTCAAAAATTCAACACACGCTAAGTTAGTTACA-TGGAGATTAACCTAC
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121543560 825 - 127223203 TCACATTCCCTGAAAATGGCAAATAAAAATGACTTAAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTAAAATGTGCAGTCCAAACATATGTCACTTGGGAAGCCCAAAACTCCTTTAGGCCAAGAATTAACATAATGTGGTCCCAGAATAGTGGTGCCTTTAGTAGACTCACA-AAAAAAATTGAAATTCTCTTTGGCATATTTTCTTCATACTAATCCTCAAAAGTGCACAAAAATAATTTTCTAAGAAAAATAAATATTTATCATTCAAAGGCTTTCTAAGTACACAAGGAAATGATATTCCACCGTTTGAAAAGAAAGCAGAAAAAGAGTACAAACAAATCTACAACGGTTT--GTGACCAGAAATATCACTGTTAGATCATAAAGCACATTTGCTTTAAAAAAAAA--------AAAAAATGAACATATT-TTAGGAGACTAAAAAAATTGATGTAGCAAATCTGAAAAGTAGTTTGTATaaaaatacag-tattttaaattaaaaactcaaaaatgaactcatcagattagacatggccatgatgagagttaat----------------------aaatatttcagaatgc-attacagataatttggaaaaatgaaaaatgtggacagaatcattaaaagacatggaag----ttgcagtgag-aaatgtagc---atgtatttagtgagtgttctcac---agaag----ggaactaggaagggataatatgtgatggtattttgact-------------------gaaagttctctagacttttgtaagacactaatccacatattcaaaaattcaacgcatgctaagcaagttaca-tggagattaacttac
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20088835 820 + 128169293 CCACATTCCCTGCAAATGGCAAATAAAAATGATTTGAGATTGGACAGATTAAAAGA-AAACCAATCATTAATGCTTTATGGCAATTAA-TTAGAAATGGTTTAAATGtgcagtccaaacatatgtcacttgggaagtccaaaacacctttaggccaatacttaacataatgtgatcccagaatggtggttcctttagtagactcac--aaagaaattcaaattctctttggCAAATTGTCTTCATACTAATTCTCAACAGTGCACATAAATAATTTTCTAAGAAAAATTAATATTTTTCATTCAAAAGC-ATCTGAGTACACAAGGAAATGATACTTCACCATTTGAAAGGAAAGCAGCAAAAGAGTATAAACAGCTCTATAAAGATTCCAGTTACTGGAAATACCACTGTTAGAATATAAAGCACATTTGCTTT----TAAAAAATAT---ACCACATGAACATATTTTTAGGAGACT-AAAAAATTGGTGTAGCAAATTCAAAAAGTAATTTGTATAAAAATATAG-TATTTTAAGTT-AAAACTCAATAATGAACTCGGCAGATTACACTCGGCAGTGGTGAGAATGAAT----------------------AAATATTTCGGAATGC-A-TACAGATAATTTGgaaaa-------atgtggacagaatcattaagagacatggaaa----atacagtgagaaagtgtagc---atgtgtttaattagtgttcttatcaaagaag----ggaactgggaagagacaatatgtgatggcattttgact-------------------gaaagttctccagacttttgtaagccactaatccacatattcaataattcaatgcatgctaagcaagctaca-tggagataaaccttt
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4110301 807 +  55844845 CAACACCGCCAGGAAATTGTAAGT-AAGTTGACTTAAAACTGAACAGATTAAAAGAGAAATAAATCATAAAGAATTAATAGCAGC-AATGTAGGCATTGTTTATATGTGCAGCCCAAACAT--GccacttgggaaatccaaaaaattcttaagtcaagaattagtataaggtggtcccagaacagtgatgtctttaagagactcacagaaacaaattcaaatcctctttgTTCAGTTGCC-----ACTAATCCTCAAAA-TGCAT----GCAATTTTCTAATAAAAATGAATGTTTGGCTTTCAAAAAT-CTCT------------AAATGATAGTCAATTTTT-----AAAAATCTGGAAAAATATATAAAAAA---CACAAAGAATTCAGTTACTGGAAACATTA---------------------TTACATT----------------------ATGAATATATCTTTAGGAGACTGATaaa--tgccctagcaaatttgaaaattaagttatttaaaaatataa-ta-tttaagttaaaaaataaatgatggacctaacacatcagacaaagcaatg-caaaagttaacaaagtgcgacgtaagccaaagaaaatatttcagaatgcgattataggtaatttgagaagacacggtatttggatggaatcatcaga--atatagagg----ataatgtgagaaaaggttcccatctatatgtaatggatattctaatacaagaggaaaaaaaatggggaaaggacaatacttaaagatttttttaataaagttctctaggaaaaaaaaaagttatccaggcttttgagggacactaatctgcatattaaaaaactcaatcaattcaagccaagatgta-ggaaaacaaggctac
i canFam3.chr18                I 189 C 0
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=59398.000000
s hg38.chr14_KI270725v1_random    127285 23 +    172810 ctctacatatctcctagagaaat
s panTro4.chrUn_GL393527          291274 23 +    341619 acctatttatctcctagagaaat
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5697766 23 +  72422247 acctacgtatctcctagagaaat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44149972 23 -  99891981 acctatgtatctcctagagaaat
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125025889 23 - 192294377 acctaagtatctcctagagaaat
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122288345 23 - 180432695 ACCTAAGTATCTCCTAGAGAAat
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121544385 23 - 127223203 acctaagtatctcctagagaaat
i chlSab2.chr21                C 0 I 474
s calJac3.chr8                  20089655 23 + 128169293 acctaagtatctcctagataagt
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4111108 23 +  55844845 atctcagtatctcatagtgaaat
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I

a score=12748.000000
s hg38.chr14_KI270725v1_random    127308 10 +    172810 agtaaacaat
s panTro4.chrUn_GL393527          291297 10 +    341619 agtaaacatc
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5697789 10 +  72422247 agtaaataat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44149995 10 -  99891981 agtaaacaat
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125025912 10 - 192294377 cgtaAGCAAT
i macFas5.chr3                 C 0 I 451
s papAnu2.chr3                 122288368 10 - 180432695 cataaacaat
i papAnu2.chr3                 C 0 I 457
s calJac3.chr8                  20089678 10 + 128169293 ggcaaacaat
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4111131 10 +  55844845 tgaaaatgac
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I

a score=83955.000000
s hg38.chr14_KI270725v1_random    127318  90 +    172810 -----caggaagggaaaaatatttcaattagcactagaaa--aatcaaattacctttaatcatattgaaatctg------------aaagcatgaaaggtaaaataaac
s panTro4.chrUn_GL393527          291307  90 +    341619 -----caggaagggaaaaatatttcaattagcactagaaa--aatgaaattacttttaatcatattgaaatctg------------aaaaaatgaaaggtaaaataaac
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5697799  90 +  72422247 -----caggaagggaaaaatatttcaattagcactagaaa--aatcaaattacctttaatcatattgaaatctg------------aaagaatgaaaggtaaaataaac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44150005  90 -  99891981 -----cagaaagggaaaaatatttcaattagcactagaaa--aatcaaaataccttaaatcatactgaAATCTG------------AAAGAGTGAAAGGTAAaataaac
i nomLeu3.chr17                C 0 I 1806
s calJac3.chr8                  20089688  86 + 128169293 -----cagcaagggacaaatattttaatgagcactag-aa--aatcaa---acctttaatcatatagaaatctg------------aaagaatggacggtaaaataaac
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4111141 109 +  55844845 aaggaagaaaagaaaaaaatactttcatcaggattaggaaataatcaaattacctttaatcatacagcaacctgacttcctaattaaaccaatgaaaagtaaaatatac
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=273068.000000
s hg38.chr14_KI270725v1_random    127408 316 +    172810 aatattatttgttaagaataat--aatgccactctgaaattctcaaccaag-aaaaatattcatcaacctatgg-------ctaaataacatatttagagacaaaaaacaaaacaccaccagcagaattccactaaagaaactaaaaagaaactctga--aaacatgcttcagaaagattgaagttctgaaatcaaagaatgaacacagagaaaaatatattgtaaacatacagatagatctaaataaaA---AATTAGGTGTTGAAACAAAAAGATATTTAAAAT--------------TAGATAAGCACTGCAATATGTATGTTAGGAAGCAAATTATTAGGG
s panTro4.chrUn_GL393527          291397 314 +    341619 aatattatttgttaagaataat--aatgccattctgaaattctcaaccaag-aaaaatattcatcaacctatgg-------ctaaataacatatttagagacaaaaaa-aaaatgccaccagcagaattccactaaagaaactaaagagaaacactga--aaatatgcttcagcaaggttgaagttctgaaatcaaagaatgaacacagagtaaaatatattgtaaacatacagatagaac-aaataaga---aactgggtgttgaaacaaaaataTATTTAAAAT--------------TAGATAAGCACTGCAATATGTATGATAAAAAGAAAATTATTAGGG
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5697889 314 +  72422247 aatattatttgttaagaataat--aatgccattctgaaattctcaaccaag-aaaaatattcatcaacctatgg-------ataaataacatatttagagacaaaaaa-aacacgccaccagcagaattccactaaagaaactaaagagaatctctga--aaacatgcttcagagaggttgaagttctgaaatcaaagaatgaacacagagcaaaatatattgtaaacatacagatagatt-aaataaaA---AGTTAGGTGTTGAAACaaaaagatatttaaaat--------------tagataagcactgcaatatgtatgttaggaagcaaattattaggg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44151901 316 -  99891981 AATATTTAAAAAaaagaataat--aatgccattctgagattctcaaccatg-aaaaatattcatcaacctatgg-------ctaaataaaatatttacagacaaaaaccaaaatgccaccagcagaattccactaaagaaactaaaaaggaattctga--aaagatgcttcagaaaggttgaagttctgaaatcaaagaatgaacaaagagcaaaatatattgtaaacatacggatagatctaaataaaa---aattaagtgctgaaacaaAAAGATATTTAAAAT--------------TAGATAAGCACCGCAATATGTATGTTGGGAAGCAAATTATTAAGG
i nomLeu3.chr17                I 1806 C 0
s calJac3.chr8                  20089774 304 + 128169293 aatattatttgctaagaataat--aatgccattttgaaattctcaactaagaaaaaatattaatcaacctatgg-------ctaaataaaatacttagagacaagaaacaaaatgccaccagcagaactccacgacagaaa-------------ctga--aaagatgcttcagaaaggttgaagttctgaaatgaaagaacgaacaaagaacaaaaccgattgtaaatatacggatagatctaaataaaA---AATTAGATGTTGAAACTAAAAGATATTTAAAAT--------------TAGATAAGCACTGCAATATGTATGTTGAGAAGGAAATTATTACAG
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4111250 330 +  55844845 aatatcatgggctgaaagaaaccaaatgtcattataga--ccccaaccaag-caaaatatccactggaccaggatccccccctaa-----aaatttag-----actaacagaatgccatcagcagaatcacagttaag-aactccaaagaaactctgaacagatatacttcaaagaagtggaatttttgaattgaaagaatgaataaagagcaaaatattttgt-aatatatgaatagatcgaaatcaaaattATTTAGGTGTTAAAATTAAAAGATATTTAAAATGGGTACACAAAAAATGGGTACACATTATATTATATACATCAGAACTTTGATTAATTAGG
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=34516.000000
s hg38.chr14_KI270725v1_random    127724 48 +    172810 CTGAAGTATTCAAAGACCCCTTAATTGTCTGACAAGAGCAGAAA----GGTA
s panTro4.chrUn_GL393527          291711 52 +    341619 CTGAAGTATTCAAAGAACCCTTAATTGTCTGACAAGAGCAGAAAAGTGAGTA
i panTro4.chrUn_GL393527       C 0 C 0
s ponAbe2.chrUn                  5698203 52 +  72422247 ctgaagtattcaaagaccccttaattgtctgacaagagcagaaaggtgagta
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44152217 52 -  99891981 CTGAAGTATTCAAAGACCCCTTAATTGTCCGACAAGAGCAGAAAGGTAAGTA
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20090078 47 + 128169293 CTGAAGTATT-AAAGATCCCTTAATTGCCTGGCCAGAGCAAAAAGGTA----
i calJac3.chr8                 C 0 I 8
e canFam3.chr18                  4111580  0 +  55844845 C
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=12795.000000
s hg38.chr14_KI270725v1_random    127772 25 +    172810 TGACTTTGCAAtttttttttttttt
s panTro4.chrUn_GL393527          291763 25 +    341619 TGACTTTGCAACTCTTTTTCTTTTt
i panTro4.chrUn_GL393527       C 0 N 0
s ponAbe2.chrUn                  5698255 25 +  72422247 tgactttgcaacttttttttttttt
i ponAbe2.chrUn                C 0 I 6
s nomLeu3.chr17                 44152269 25 -  99891981 TGACTTTGCAACttttttttttttt
i nomLeu3.chr17                C 0 C 0
e canFam3.chr18                  4111580  0 +  55844845 C
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e calJac3.chr8                  20090125  8 + 128169293 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=75425.000000
s hg38.chr14_KI270725v1_random    127797 291 +    172810 tttgagaaggagtctcactcactctttctcccaggctggagtgcggtggcgccatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagcggggattacagccacgtgccaccatgcctggctaatttttgtatttttagtatagacggggtttcaccatgttggtcaggctagtctccaactcctgacctcgtgatccacacgcctcggcctcctgaagtgttgagattacaggtgtgagccactgcgcgcgaccGACT
s ponAbe2.chrUn                  5698286 291 +  72422247 tttgagaagaagtctcactcactgtttcgcccaggctggagtgcagtggcgccatctcggctcactgcaacccctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagcggggattacagccgcgtgccaccatgcctggctaatttttgtattttcagtagagacagggtttcaccatgttggtcaggctagtctccaactcctgacctcgtgatccacacgcctcggcctcccgaagtgttgagattacaggcgtgagccactgcgcgcgaccgact
i ponAbe2.chrUn                I 6 C 0
s nomLeu3.chr17                 44152294 291 -  99891981 tttgagacggagtctcactcactctgtcgcccagactggagtgcagtggcatgatctcggctcactgcaacctctgtctcccaggttcaagcaattctcctccctcagcctcttgagtagcagggattacagccgcgtgccaccatgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggtcaggctggtctccaactcctgacctcgtgatccacatgcctcagcctccagaagtgctgagattacaggcgtgagccactgcgcgtgaccGACT
i nomLeu3.chr17                C 0 C 0
e canFam3.chr18                  4111580   0 +  55844845 C
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e calJac3.chr8                  20090125   8 + 128169293 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=10150.000000
s hg38.chr14_KI270725v1_random    128088 25 +    172810 TTGGAACTTTAATAAATTGACTGGA
s ponAbe2.chrUn                  5698577 25 +  72422247 ttggaactttaataaattcactgga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44152585 25 -  99891981 TAGGAACTTTAACAAATTCACTGGA
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20090133 25 + 128169293 TTGGGACTTTAACAAATTCAGTCGG
i calJac3.chr8                 I 8 C 0
e canFam3.chr18                  4111580  0 +  55844845 C
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=52337.000000
s hg38.chr14_KI270725v1_random    128113 147 +    172810 CATTATGCATTTCTCTGTTGTATCTATGAAAACAATAAA---AATAAAAGTCATAATTTTAAAACAAGAA-TACAGAAACTGATAGGAGAAAATGAGACAGtatatatatatatatatataCACACAACAAATTAATAATACAAAATTAAG
s ponAbe2.chrUn                  5698602 138 +  72422247 cattatgcatttctctgttgtagctatgaaaacaataaa---aataaaagtcataatttaaaaacaagaa-gacagaaactgataggagaaaatgaggcattatatatatata--------cacacaacaaattaataaaacaaa-ttaag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44152610 133 -  99891981 CATTATGCATTTCTCTGTTGTATCTATGAAAACAATAAA---AATAAAAGTCATAATTTAAAAACAAGAA-GAC--AAACTAATAGGAGAAAATGAGACataatatatatata------tatataCAACAAATGAA-AAAACAAAG-----
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20090158 143 + 128169293 CACTATGCATTTCTCTGTTGTATCTATGAAAACAATAAA---AACAAAAGTCATAATTTAAAAACAAG----ACAGAAGCTGATAGGAGAAAATGAGACATCatatatacatttatatgtatacattttaatttgcatatattttgtttg-
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4111580 132 +  55844845 CATTGTGCATTTTTCTACTCTATCCATATAAATAGTAGAAACAATAAAAGTAATAATATAACAACAAAAATGGGGGGAAATAAAAATAAAAAGGGGGAAAATATAAAAAAGGA------AACATATTTTAAGTATGGA-------------
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=130193.000000
s hg38.chr14_KI270725v1_random    128260 262 +    172810 TATAAATGatcaaagatta------acttaaacctaa-gtagac---aat-gtt---tttgttaaaatacaaagattggca-aaa---------------------tttaaaacatctgtc------tctatcatagttacaagagaggcaactaatatataaatttacaggaactttgaagtttgaacaatacagatactgtgtatatatgatatacataca-aacatactacatgaatataattttttaaaaagttgctat-------------gtagacaaaacagaatgtaagttagaaata---tttattaaaata
s panTro4.chr7_GL390646_random     16244 259 +     53068 TATAAATGATGAAAGATGA------ACTTAAACCTAA-GTACAC---CAT-GGT---TTTGTTAAAATACGAACATTGGCA-AAA---------------------TTTAAAAATTCCGTC------ACTATCATACTTACAAGAGAGGCAACTAATACATAAATTTTCAGAAACTTTGAAGTTCAAACAATACAGATAGTGTGTATATATGATATACATACA-AACATAC---ATGAATATAAATTTTTAAAAAGTTGCTAT-------------GTATACAAAATGGAACATAAGTTAGAAAAA---TTTATTAAAATA
i panTro4.chr7_GL390646_random N 0 C 0
s ponAbe2.chrUn                  5698740 261 +  72422247 tataaatgatcaaagatta------acttaaacctaa-gtagat---aat-gtt---tttgttaaaatacaaagattagca-aaa----------------------ttaaaaaatccgtc------tctatcatacttacaagagaggcaactaatacataaattttcagaaactttgaagttcaaacaatatagatagtatgtatatatgatatacataca-aacataccacgtgaatacaattttttaaaaagtcgctat-------------gtagacaaaatagaatgtaagttagaaaca---tttattaaaata
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44152743 268 -  99891981 tataaatgatcaagtataaatgtctacttaaacataa-gtagac---aat-gtt---tttgttaaaatacaaagattggca-aca---------------------ttaaaaaaattcacc------tctatcatagttacaatagcggcaactaatatataaatttacagaaactttgaagttcaaacaatacagatactgtgtatatatgatatacatata-aacatactacatgaatataattttttaaaaagttgctat-------------gtagacaaaatagaatgtaaattagaaaca---tttattaaaata
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20090301 235 + 128169293 tatacat---------tta------atttatatataatatatacataaat-gtttaatttgtataaattttatgatttgtatata---------------------tttaatatgtatatTTTTTAATTTGTtatgtatatatgg---------aatatatatatt------------------------atatatatattatgtatatggaatatatatacataACAAATTAAAAAACCCAAAATTAACTATAAGTGATCA---------------AAGATGAACttaaatgtaag-tagacaaagtttttgttaaaata
i calJac3.chr8                 C 0 I 919
s canFam3.chr18                  4111712 261 +  55844845 CATAAAGTATCAAAGATCA------CCTTACATATAA-ATAGAC---AATAAGT---TTCCTTAAGATACCAAGATTGACA-GAAGAGGTGTTGCTTTGTTTTGTTTTTAa----tccatt------tctatgatggttacaaat--gactaccaagatataagattacagaaagattgaaattcaaataatagg-----------------------------aacatgctacgcaaatgcaatattttga-aagttgatattgttatagcaatgataagcaaaatagaatttaag-taaaagta---ttaatatgaggg
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=225695.000000
s hg38.chr14_KI270725v1_random    128522 475 +    172810 agttagtctaaccagtgtgataaaagttttaagttattaagaagatgtgatgacttaaatgtgcgttagcctgataCATACATATATATATacacacaaaccacacactctctcacaaccacagacatacacGTATTTAGagagagagtcaaattatataaagcaaaaatatcagaaa-gta----gaaatggataagcccccaaat-attatagacatttcaaacacacatctttcaataatagataaaagaaaaaattaaaagagtaagttttaaaagaagctagtggattttaaaaagggcaaatattatataaggaacatgaatattatagttcatgttattttcttgttcatacagaatacttacaaaaattaacattttctagaccataccacaaattcaaacaattttcacggaaataacgtgacacagaatatacttcctaaacaaacagcaatgaaggcagatatcaataca
s panTro4.chr7_GL390646_random     16503 462 +     53068 AGTTAGCCTAAC-AGTGTGATAAAAGTTTT--GTTATTAAGA---TGTGATGACTTAAATGTGCATTAGCCTGatacatatatacatatatacacaca--ccacacactctctc----tcacacacacacaTGTATTTAGAGAG----tcaaattatataaagcaaaaatatcagaaa-gtaagtagaaatggataagcccccaaatcattatagacatttcaaacacacatctttcagtaacagatcaaagaaaaaattga--gagtaagTTTTAAAAGATGCTAGTGGATTTTAAAAAGGGCAAATGTTATATAAGGAACATGAATATTATaattcatgtcattttcatgttcatacagaatacttacaaaaattaacattttctagagcataccacaaattcaaacaattttcacggaaataacgtggcacagaatatatttcctaaacaaacagcaatgaaggtagatatcaataca
i panTro4.chr7_GL390646_random C 0 C 0
s ponAbe2.chrUn                  5699001 477 +  72422247 agttagtctaaccagtgtgataaaagttttaagttattaagaagatgtgatgacttaaatgtgcatTAGCCTGATacatatatacatatatacacacacactacacactctctctc--acacacacacacacGTATTTAGagagagagtcaaattatataaagcaaaaatatcagaaa-gtaagtagaaatggataagcccccaaatcaatatagacatttcaaacacacatctttcagtaatagatacaagaaaaaattaaaagagtaagttttaaaagaagctagtggattttaaaaa-ggcaaatgttatataaggaacatgaatattataattcatgtcattttcatgttcatacagaatacttacaaaaattaacattttctagaccataccacaaattcaaacaattttcacggaaataacgtgacacagaatgtatttcctaaacaaacagcaatgaaggtagatagcaataca
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44153011 459 -  99891981 agttagtctaaccagtgtgataaaagttttaagttattaagaagatgtgatgacttaaatgtgcattagcctgacaCATATATACATACATacacacacac-----------------acacacacacacacaTATTTagagag--agtcaaattatat--agcaaaaatatcagaaa-gtaagtagaaatggataagcccccaaatcattatagacatctcaaacacacatctttcagtaatagataaatgaaaaaatttaaagagtaagttttaaaagaagctagtggattttaaaaagggcaaatgttatatatggagcacgaatattataattaatgttattttcatgttcatacagaatacttacaaaaattaacattttctagaccataccacaaattcaaacaattttcgcagaaataacatgacacagaatatatttcctgaacaaacagcaatcaaggtagatatcaataca
i nomLeu3.chr17                C 0 C 0
s canFam3.chr18                  4111973 266 +  55844845 aattattct-----ttattataaaagttttgatttattggga-aatgtgatgatttatatgtgtattagccttacatatatgtatat-------------------------------------------------------------ccaacctatataaataaaaaatatcagaactacaaagagaaatggctaaa-tcccaaatcactgtagacatttcaaacatata--tttcagtCATAG----GAGAAAAAATTAAAATATTGAGCACTGAAAGGAGCCCTTTGA---------------------------------------------------------------------------TTAACAAAATTAA-----TCAA----ATACCATGCATTGGAA----------AGGAATAGC--------------------------AACAACA---------------------
i canFam3.chr18                C 0 C 0
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e calJac3.chr8                  20090536 919 + 128169293 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=183335.000000
s hg38.chr14_KI270725v1_random    128997 275 +    172810 aaaacgaaagctagaaaCA-----TAAGTCTAATAA------------TATTGGTTGGAAGCTATTTTAATGA--ATATTGAAATATTTTAAAGGTGAATAGTCC----ATACAAATAAACCAAACACTTTTTTAAGGCCACTAAGATGCATGTGTAATGTGTAATGCCTC---CTTTTATAAGGAGTCA-ATCTGTAACATCACCTGGGCTATTTGACAACTGCAAAGTGAATGTGAGA----------------------------------------AGGAGAGAAACAGT-------------------------------------------------------Gagagagagagagagagaaa-accagtaaa------ataaagaatgaaggagata
s panTro4.chr7_GL390646_random     16965 275 +     53068 gaaaagaaagctagaaaCA-----TAAGTCTAATAT------------TATTGGTTGGAAGCTATTTCAATGA--ATATTGAAATGTTTTAAAGGTGAATAGTCA----ATACAAATGAACCAAACACTTTTGTAAGGCCACTAAGATGCATGTGTAATGTGCAATGCCTC---CTTTTATAAGGAGTCC-ATCTGTAACATCACCTGGGCTATTTGACAACTGCAAAGTGAATGTGAGG----------------------------------------AGGAGAGAAACAGC-------------------------------------------------------------GAGAGAGAGATAAA-ACCAGTAAAATAAACATAAAGAATGAAGGAAATA
i panTro4.chr7_GL390646_random C 0 C 0
s ponAbe2.chrUn                  5699478 267 +  72422247 aaaaagaaagctagaaaCA-----TAAGTCTAATAA------------TATTGGTTGGAAGCTATTTTAATGA--ATATTGAAATATTTTAAAGGTGAATAGTCA----ATACAAATG-----AACACTTTTGAAAGGCCACTAAGATGCATGTGTAATGTGTAATGCCTC---CTTTTATAAGGAGTAA-ATCTGTAACATCACCTGGGCTATTTGACAACTGCAAAGTGAATGTG-------------------------------------------AGGAGAGAAACGGT-------------------------------------------------------------GAGAGAGACATAAA-ACCagtaaaataaacataaagaatgaaggaaata
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44153470 280 -  99891981 aaaaagaaaactagaaaCAT----TAAGTCTAATAA------------TATTGGTTGGAAGCTATTTTAATGA--ATATTGAAATATTTTAAAGGTGAATAGTCA----ATACAAATGAACCAAACACTTTTGTAAGGCCACTAAGATGCATGTGTAATGTGTAATGCCTC---CTTTTATAAGGAGTAA-ATCTGTAACATCACCTGGGCTATTTGACAACTGCAAAGTGAATGTAAGA----------------------------------------AGGAGAGAAACAGT---------------------------------------------------------GAGAGAGAGagagataaa-accactaaaataaacataaagaatgaacgaaata
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20091455 391 + 128169293 AGAAAGAAAGCTAGAAACATCACATCAGTCTAATAAAATGGGTAATAGTATGGGTTAGAAGCCATTTTAATGA--ATAGTGCAATATTTTAAAGGTGAATATTTAATGCATACAAATGAACCAAACACTTGTGTAACGCCACTAAGATGCATTTGTGATACATAATGC----------TATAAGCAGTAA-ATCTGCAACATCACTTGGGCTGCTCCACAACTACAAAGTGAATATGAGAGAGAAACTGAGAGAGACAGAATCTGGGATGGGGGAAGAGCAagagagagaaagaggggagggagagagagagagagagagagagcgaaagagagagagagagagagagagagagagagagagagagaAATACCAGTAAAACAAGCATAATGAAGGAAATAGGAg
i calJac3.chr8                 I 919 C 0
s canFam3.chr18                  4112239 247 +  55844845 AAAAAgaaaactagaaaaa-----taagtctaaatg------------atctgggtcaaagacatgataatgaatatattacaatatatctcagttaaataatc-----atgaaaata-----aacggctgtaaaaaaaaaaagaaaagaaacggc--tgtataatgcagcaaaaatatgtaaagagaaacatttctaacattaattgggctactt-agaaataaaaaatgaat----------------------------------------------aaatgagaaa-----------------------------------------------------------------gagag----------aacagtata------atatagaataaggaaaata
i canFam3.chr18                C 0 I 207
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=72241.000000
s hg38.chr14_KI270725v1_random    129272 94 +    172810 gccaggcgccatggt---tcactcctgtaatgccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctggtc
s panTro4.chr7_GL390646_random     17240 94 +     53068 Tccagctgccatggt---tcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggtc
i panTro4.chr7_GL390646_random C 0 M 3000
s ponAbe2.chrUn                  5699745 94 +  72422247 gccaggcgccatggt---tcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcgagactagcctggtc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44153750 94 -  99891981 gccaggcgccatggt---tcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggtc
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20091846 97 + 128169293 gccggaaacagtggctcatcatgcctgtaataccagcactttgggaggctgaggctggcagatcacttgaagtctggagttcgagactagcctcgtt
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4112486 207 +  55844845 I
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I

a score=72412.000000
s hg38.chr14_KI270725v1_random    129366 193 +    172810 taacatggtgaaacccactatctactaaatataccaaaattagcctggcatggtggcatgcctctgtaatcccagctactcgggaggctgaggtgggagaattgcttgaacgtggggggtggaaattgcagtgagtagagatcacgcgactgcactccagcttgggcgacagagcaagactccgtgtcaaaaa
s ponAbe2.chrUn                  5699839 187 +  72422247 caacatggtgaaacccactctctactaaatatacaaaaattagcctggcatggtgacatgcacctgtaatcccagctactcgggaggctgaggtgggagaattgcttgaacgtgggggctggaggttgcagtgagttgagagtacgccactacactccagcttgtgcaacagagcaagactccgact------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44153844 193 -  99891981 caatatggtgaaacccgctttctactaaagatacaaaaattagccttgtgtggtggcatgcacctgtaatcccagctactggagacgctgaggtggtagaattgcttaaatctgggaggtggaggttgcagtgagtagagatcacgccactgcactcaagcttgggcgacagagcaagactccatctcaaaaa
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20091943 193 + 128169293 caacatggtgaaactctgcctctacgaaaaatacaaaatttagccaggcgtggtggtgcaggcctgtaatcccagctactcaggaggctgagggaagagaatcgtttcaacccaggaggcagaggttgctctgagccaagatcacaccactgcactccagcctgggagacagagtgagattctgtctcaaaaa
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4112486 207 +  55844845 I
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=14086.000000
s hg38.chr14_KI270725v1_random    129559 72 +    172810 acaaacaaacaaaaaaaaaaaaaac----gaggaaatagtacacgaaaaaacag-aattaaagcaactgggtatata
s ponAbe2.chrUn                  5700026 58 +  72422247 --------------aaaaacaaaag----gaggaaatagtacatgaaaaagcag-aagtaaagcaactgactatata
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44154037 64 -  99891981 aaaaa---------aataaataaag----gaggaaatagtacatgaaaaagcagaaattaaagcaactgagtatata
i nomLeu3.chr17                C 0 C 0
s calJac3.chr8                  20092136 68 + 128169293 aaaaa---------aaaaaaaaaagaaTTAATTAAATAATACATAAAGAGGCAGTAATTAGAACAACTGACCATATG
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4112693 39 +  55844845 -------------------tcaaat----aaataaataaaatctttaaaaataa-aataaaag--------------
i canFam3.chr18                I 207 C 0
e rheMac3.chr3                 124574268 483 - 198365852 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e chlSab2.chr21                121544408 474 - 127223203 I
e papAnu2.chr3                 122288378 457 - 180432695 I
e macFas5.chr3                 125025922 451 - 192294377 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=1658352.000000
s hg38.chr14_KI270725v1_random    129631 765 +    172810 tttaaaaatgcaaaagctcactttttcagaaaaatattaaaatattaaatctaacaaatatctaggtagactgatggagaaaaatacagaaaatgcacaaaaaaccaattacctggaat-gCGAATGTTACAAAACGTCAGC---AGTTGTAGATTTTAAATAAGCAATGATTTTTG----AGTTCAACCATGATGGTG-----TATATTGAAAAGAATCTCTCAGAAA-A-----AAAGAAAAAG----------------------AAAACTGTTATAAAGCTATGTACAAAATGTTAAGCAGTATTAAAGTCTTCCAAATCTACCAGTTATGGAGTTATTGGTCTTGGACTAACTCTCCTGAAAAGAAAaaaacaaaacaaaacaaaacaaaac--aaaacCTAAA---AACCTGGAAAAAATGGCCTACCATGGGCACTGGCAATGCATCCAAGCAGGTAGGACCT-G-GGTGCTACAttctctttgtcagaacacaaaacattcatacactcttctcatcctcactttcaccttttaatcttagatctactattaaatgtattcaacattact-------atcaatcctttggtcaaaatttctttactcacattgtgcttgatgcactt-ggatagactgttcaagaactt---gtgagtagtgaattcctcaaactcttgcatatttaaaatcacatttttgaaccttgatgctt-gaagtgtagtttggGTAACAGATGACCTTTAAGCCAATTTTGGCATGCAAGGGGTTG--TTTATTAGGCATCAGCACTGCTG-AAAATCGTGGGGATGCAGGCTT
s ponAbe2.chrUn                  5700084 771 +  72422247 tttaaaaatgcaaaagctcactttttcagaaaaatattaaaatattaaatctaagaaatatctaggtagactgacagagaaaaatacacaaaatgcacaaaaaaacaattacctggaat-gcgaaggatacaaaacgtcagc---agttgtagattttaaaTAAGCAATGACTTT-G----AGTTCAACCATGATGGGG-----TATATTGAAAAGAATCTCTCAGAAA-A-----AAAGGAAAAG----------------------AAAACTGTTATAAATCTATGTACAAAATGTTAAGCACTATTGAAGTCTTCCAAATCTAGCAGTTATGGAGTTATTGGTCTTGGACTAACTCTCCTGAAAAGAAAAAAACAAAACAAAACAAAAAAACCCTAAAAACCTGGATCAAACCTGGATAAAATAGCCTACTGTGGGCACTGGCAATGCAACCGAGCAGGTAGGACAT-G-GGTGCTACAttctctttgtcagaacacgaagcattcatacactcttctcaccctcactctcaccttttaatcttagatctactattaaatgtattcaacattact-------atcaatcctttggtcaaaatttctttactcacattttgcttgatgcactt-ggatagactgttcaagaaagt---gtgagtagtgaattcctcaaactcttgcatatttaaaattagatttttgagccttgatgctt-gaagtgtagcttggGTAATGGATGGGCTTTAAGCCAATTTTGGCATGCAATGGGTAGAGTTTACTAGGCATCAGCACCTCTG-AAAATCGTGGGGATGCAGGCTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44154101 763 -  99891981 tttaaaactgcaaaagctcactttttcagaaaaatattaaaatattaaatctaacaaatatctaggtagactgatggagaaaaatacagaaaatgcacaaaaaaccaattacctggaat-gagaaGCATACCAAACATCAGC---AGTTGTAGATTTTAAATAAGCAGTGACTTT-G----AGTTCAACCATGGTGGGG-----TATATTGAAAATAATCTCTCAGAAA-A-----AAAGAAAAAG----------------------AAAATTGTTATAAAGATATGTACAAAATGTTAAGCACTATTAAAATCTTCCAATTCTATCAGTTATGGAGTTATTAGTCTTGGACTAACTCTCCTGAAAAGAAaaacaaacaaacaaacaaacaaaaaa--caaacCTAAA---AACCTGGATAAAATAGCCTACCGTGGGCACTGACAATGCAACCAAGCAGGTAGGACAT-G-GGTGCTACAttctttttgtcagaacacgaagcattcatacactcttctcaccctcactctcatcttttaatcttagatctactattaaacgtattcaacattact-------atcaatccttt-gtcaaaatttctttactcacattttgcttgatggactt-ggatagactgtt-aagaaagt---gtgagtagtgaattcctcaaactcttgcatatttaaaattacttttttgaaccttgatgctt-gaagtgtagcttggGTAACAGATTGGCTTTAAGCCAATTTTGGTATGCAAGGGGTTCAGTTTATTAAGCATCAG-ACCTCTG-AAAATCATGGGGATGCAGGATT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124574751 748 - 198365852 TTTAAAAATTCAAAAACTCACTttctcagaaaaatattaaaatattaaatctaacaaatatctaggtaggctgatggagaaaaatagagaaaatgcacaaataaccaattacctggaat-gcgaaggatacaAAATGTCAGC---AGCTGTAGATTTTAAATACGCAGTGACTTT-G----AGTTCAACCATGATGGGG-----TATATTGAAAAGAATCTCTCAAAAACAAAAAGAAAAGAAAAG----------------------AAAACTGTTATAAAGTAATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAGTTCTACCAGTTATGGAGTTACTGATCTTGAACTAACTCTCCTGCAAAGAAAAAA--------------------------AACTTAAA---AACCCGGATAAAATAGCCTACTGTGGGCACTGGCAATGCAACCAAGCAGGTAGGACAT-G-TGTACTACAttctctttgtcagaacatgaagcattc-tacactcttcccaccctcactctcaccttttaatctcagatctactattaaatatgttcaacattact-------atcaatcctttggtcaaaatttctctactcacattttgcttgatgcactt-ggatagactgttcaagaaagt---gtgagtagcgaattcctcaaactcttgcatatttaaaattacacttttgaaccttgatgctt-gaagtgcagcttggGTAACAGGTTGGCTTTAAGCCGATTTTGAGCTTCAAGGGGTTGAGTTTATTAGGCTTCAGCATCTCTGAAAAAACGTGTGGATGCAGTATT
i rheMac3.chr3                 I 483 C 0
s macFas5.chr3                 125026373 743 - 192294377 TTTAAAAATTCAAAAACTCACTTTCTCAGAAAAATATTAAAATATTAAATCTAACAAATATCTAGGTAGGCTGATGGAGAAAAATAGAGAAAATGCACAAATAACCAATTACCTGGAAT-GCGAAGGATACAAAATGTCAGC---AGCTGTAGATTTTAAATACGCAGTGACTTT-G----AGTTCAACCATGATGGGG-----TATATTGAAAAGAATCTCTCAAAAACA-----AAAAGAAAAG----------------------AAAACTGTTATAAAGCTATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAGTTCTACCAGTTATGGAGTTACTGGTCTTGAACTAACTCTCCTGCAAAGAAAAAA--------------------------AACTTAAA---AACCCGGATAAAATAGCCTACTGTGGGCACTGGCAATGCAACCACGCAGGTAGGACAT-G-TGTACTACAttctctttgtcagaacatgaagcattc-tacactcttcccaccctcactctcaccttttaatctcagatctactattaaatatgttcaacattact-------atcaatcctttggtcaaaatttctctactcacattttgcttgatgcactt-ggatagactgttcaagaaagt---gtgagtagcgaattcctcaaactcttgcatatttaaaattacacttttgaaccttgatgctt-gaagtgcagcttggGTAACAGGTTGGCTTTAAGCCGATTTTGAGCTTCAAGGGGTTGAGTTTATTAGGCTTCAGCATCTCTGAAAAAACGTGTGGATGCAGTATT
i macFas5.chr3                 I 451 C 0
s papAnu2.chr3                 122288835 753 - 180432695 tttaaaaattcaaaaactcactttctcagaaaaatattaaaatattaaatctaacaaatatCTAGGTAGACTGatggagaaaaatagagaaaatgcaCAAATAACCAATTAACTGGAAT-GCGAAGGATACAAAATGTCAGC---AGCTGTAGATTTTAAATACGCAGTGACTTT-G----AGTTCAACCATGATGGGG-----TATATTgaaaagaatctctcaaaga-a-----aaagaaaaag----------------------aaaactgttataAAGCTATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAGTTCTACCAGTTATGGAGTTATTGGTCTTGAACTaattcttctgaaaaaaaaagaaaata-------aaa---------acaacttaaa---aatctggataaaaTAGCCTACTGTGTGCACTGGCAATGCAACCAAGCCGGTAGGACAT-G-TGTACTACATTCTCTTCGTCAGAACATGAAGCATTCATACACTCTTCCCACCCTCACTCTCACCTTTTAATCTTAGATCTACTATTAAATACGTTCAACATTACT-------ATCAATCCTTTGGTCAAAATTTCTCTACTCACATTTTGCTTGATGCACTT-GGATAGACTGTTCAAGAAAGT---GTGAGTAGTGAATTCCTCAAACTCttgcatatttaaaattacactttTGAACCTTGATGCTT-GAAGTGCAGCTTGGGTAACAGGTTGGCTTTAAGCCGATTTTGAGCTTCAAGGGGTTGAGTTTATTAGGCTTCAGCATCTCTGGAAAAACGTGTGGATGCAGTATT
i papAnu2.chr3                 I 457 C 0
s chlSab2.chr21                121544882 753 - 127223203 TTTAAAAATTCAAAAACTCACTTTCTCAGAAAAATGTTAAAATATtaaatctaacaaatatctaggtagactgatggagaaaaatagagaaaatgcacaaataaccaattacctggaat-gtgaaggatacaAAATGTCAGC---AGCTGTAGATTTTAAATATGCAATGATTTT-G----AGTTCAACCATGATGGGG-----TATATTGAAAAGAATCTCTCAAAAA-------AAAGAAAAAT----------------------AAAACTGTTATAAAGCTATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAGTTCTACCAGTTATGGAGTTATTGGTCTTGAACTAACTCCCCTGGaaaaaaaaaaaaaaag------aaa---------aaaacttaaa---aaCCTGGATAAAATAGCCTACTGTGGGCACTGGCAATGCAACCAAGCAGGTAGGACAT-G-TGTACTACAttctctttgtcagaacaggaagcattcatacactcttcccaccctcactctcaccttttaatgtcagatctactattaaatattttcaacattact-------atcaatcctttggtcaaaatttctctgctcacattttgcttgatgcactt-ggatagaccgttcaagaaagt---gcgagcagcgaattcctcgaactcttgcatatttaaaattacatttttgaaccttgatgctt-gaagtgcagcatggGTAACAGGTTGGCTTTAAGCCAATTTTGAGCTTCAAGGGGTTGAGTTTATTAGGCTTCAGCATCTCTGGAAAAACGTGTGGATGCAGTATT
i chlSab2.chr21                I 474 C 0
s calJac3.chr8                  20092204 761 + 128169293 TTTAAaaattcaaaagctcactttttcaga--------agaacattaaatctgacaaatatctgggtgcactgatggagaaaaatacagagaatatataaatagccaattatttggaat-gcaaaatgcaaaggagacaAGCTGTAGCTGTAGATTTTAAATAAGCAATGACTTT-G----AGTTCAATCAT-ATGGGG-----TATATTGAAAAGAATCTCTCATAAA-A-----TAAGAAAA------------------------CAATCTCTTATAATGCTATGCACAAAATGTTAAGCATGATTAAAGTCTTCCACTTCTACTAGTTACAGAGCTACTGGTCTTGGACTAACTCTCCTGAAAAAAACAAAGACAACAACAAAAAA---------ACAACTTAAA---AACCTGAATAAAATAGCCTACTGTGGACTTTGGCAACGCAACCAAGCAGGTAGGACATGG-GGTACTACAttctctttgtcagaacggggagcattcacacactagtcccaccctcactctcacctttcaatctcagatctattattgaatgtattcaatactattgaatgtaatcaatccttttgttgaaatttctctactcatattttgcttgatgcactt-gggtagactgttcaagaaagt---acgagtagcaaattccacaaactcttgcatatttaaaattacactttttaaccctgatgctcaaaagggtggcttggctAACAGGTTGGGTTTGAGCCTAACCTGGCATGCAAAGGGTTGAATTTATTAGCCATCAGCACCTCTGGAAAAACGTGGGGATGCAGGATT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4112732 734 +  55844845 ttgaaaaattcaaa--------ctttgataataataataaagcaaagaatcca--------ctagcaagactagtgaagatacatgaagaaaattctcaagcaacc-attaactggaacggtaaagaaggcacagtcatggc---atatttgcacattaa------aatgatGTT-GTGTCATTTGTATCGTTATGGGGTAGCATATGGTGGAGTAAGTCTCTCAGAAA-------AGAGAAACAGAACCAAAACCAAAACCAAACCAAACACCGT----AAGCTATGCAGTAGACATTAAGCGATAATACGATCTCCCCATTCTGGCACTCTTGTGGTTA----TGTTGGGCCAAC---CTTGACAAAAACCATCTATA-------------------AAAGGCGCAC---AAAATAAACGAAACAAGTGACTGCAGGCGTTGG-AGTTCCACCAAGCCCAAAGGACAT-GAGGTACTACATTctct--gtcagaacatttaa-atttacatactctttccactctta-ttgcaccatttaatcttagatctactattaagtatactcaatattacc-------attaatcatttcat-aaaattcaccacctcacatcatacttcatgaaattctaatagactctttagaaaagtctaatgaatatataatttctcaaatttttgcatgtttaaaactacactcattagccttgttgctt--aattgctgcttggtt----ggTCCAGTACAAATATGGTTTGGGATGCA--GGATC---CTTATTGGAGATCTG--CTTGTGAAAAGAGGTGGGAAAGCAGAATT
i canFam3.chr18                C 0 I 4416
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=31591.000000
s hg38.chr14_KI270725v1_random    130396 13 +    172810 AATTTCAACACTA
s ponAbe2.chrUn                  5700855 13 +  72422247 AATTTCAACACTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44154864 13 -  99891981 AATTTCAACACTA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124575499 13 - 198365852 AATTTCAACCCTA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125027116 13 - 192294377 AATTTCAACACTA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122289588 13 - 180432695 AATTTCAACACTA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121545635 13 - 127223203 AATTTCAACACTA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20092965 13 + 128169293 AATTTCAGCACTA
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4113466 4416 +  55844845 I
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=2002215.000000
s hg38.chr14_KI270725v1_random    130409 843 +    172810 TTCTAAATACTTGAAAGATATTATATAATTCTTTAATAAACTCCTGTGTATAAAAATGGTTCACA-T-TAACTCAATATCCATGATTAAACATTTACAAAATCAAGGCACTGTTATTTAGTGGAGACTTGCTGGCTATTCTATGAGAG----------GAGGTATTGTTATTGTAATCTCATCCTCTCATAAATATGTATCATATTACTCATAACCAGCCCTTCATATTCTATTCCTATTTTGGTATTTTAAAATAAGATATCTTTGAAACTCTTGAATTCAAAGAGGGAATCTGAATAATTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTTAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTTTTTATCTGAATTCTAAGAACAATCACATTAGGTTTTAACCACGAATGTGAGAATCTTCTAAATGTTAGGGTGGAAAAATTTTTTAAATA-----------------ATTGTATAGTAATTTTTTTCATCATAGTGACAGTGTGCTAAA--TTTTTTTAAGCCAAGTATTACTGTAGA--CATTTAAGTCAGGATTCTAAGAAGCTG---TTCTAAACTCGAAAATTTAGTTTCATATACACTGATATTATA------------------------------------------------------TATAT--ATTTGCATAAAAAATTAATACATGTGAGCCATGTTTCAAATAGTTGAGAGATTATTATATCAAAGATTCTTGATTATATAAAATGCCAGTTACTTATAGGCACACGTGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATATGG-ACATAATATTATGGTCTGAAGAATATTTAGGCATATTTATTCCTCATATGATTAGAAGAACAA
s ponAbe2.chrUn                  5700868 841 +  72422247 TTCTAAATACTTGAAAGATATTATATAATTCTTTAATAAACTCCTGTGTCTACAAATGGTTCACA-T-TAACTCAATATCCATGATTAAACATCTATAAAATCAAGGCACTGTTATTTAGTGGAGACTTGG-GGCTATTCTATGAGAG----------GAGGTATTCTTATTGTAATCTCATCCTCTCATAAAAGTGTATCATATTACTCATAACCAGCCCTTCATGTTCTATTCTTATTTTGGTATTTTAAAATAAGATATCTTTGAAACACTTGAATTCAAAGAGGGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTCAACAAATACAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTGTTT-TCTAAATTCTAAGAACAATCACAATAGGTTTTAACCACAAATGTGAGAATATTCTAAATGTTAGCGTGGAAAAATTTTTTAAATA-----------------CTCATATAGTAATTTTTTTCATCATAGTGACAGTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTGGA--CATTTAAGTCAAGATTCTAAGAAGCTG---TTCTAAAGTCCAAAATTTAGTTTCATATACAATGATATTATA------------------------------------------------------TATAT--ATTTGCATACAAAATTAATATATGTGAGCCATGTTTCAAATAGTTGAGAGATTATTATATCAAAGATTCTTGATTATATAAAATGCCAATTACTTATAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTACTACTGGCATTTATATGG-ACATAATATTATGGTCTGAAGAATATTTAGGCAAATTTATCCCTCATATGATCAGAAGAACAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44154877 841 -  99891981 TTCTAAATACTTCAAAGATATTATATAATTCTTTAATAAACTCCTGTGTCTACAAATGGTTCAGA-T-TAACTCAATATCCATGATTAAACATCTATAAAATCAAGGCACTGTTATTTAGTGGAGACTTACTGGCTATTCTATGAGAG----------GAGGTATTGTTATTGTAATCTCATCCTCTCATAAAAGTGTATCATATTACTCATAACCAGCCCTTCATATTCTATTCCTATTTTGGTATTTTAAAATAAGATATCTTTGAAACACTTGAATTCAAAGAGGGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTTTTA-TCAAAATTCTAAGAACAATCACAATAGG-TTTAACCACAAATGTGAGAATATTCTAACTGTCAGGGTGGAAAATTTTTTAAAATA-----------------ATTTTATAGTAATTTTTTTCATCATAGTGACAGTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTAGA--CATTTAAGTCAAAATTCTAGGAAGTTG---TTCTAAAGTCCAAAATTTGGTTTCATATACAATGATATTATA------------------------------------------------------TATAT--ATTTGCTCATAAAATTAATATATGTGAGCCATGTTTCAAATAGTTGAGAGATTATTATATCAAAGATTCTTGATTATATAAAATGCCAATTACTTATAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTGTACTCTTGCTACTGGTATATATATGG-ACATAATATTATGGTCTGAAGAATATTTAGGTAAATTTATACCTCATATGATCAGAAGAACAA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124575512 856 - 198365852 TTCTAAATACTTGGAAGATATTATATAATTCTTTAATAAGCTCCTGTGTCTACAAATGGTTCAGA-T-TAACTCAATATCCATGATTAAACGTCTATAAAACCAAGGCACTGTTATTTAGTGGAGACTTGCTGGCTATTCTATGAGAGCAGTTATTGTGAGGTATTGTTATTGTAATCTCATCCTCTCATAAAAGTGTATCATATTACTCATAACTGGCCCTTCATATTCTATTCCTATTTTGGTATTTTAGAATAAGATATCTTTGAAACACTTGAATTCAAAGAGAGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTTCGAACTTTCTGAAACATTTTTTA-TCTAAATTCTAAGAATAATCACAATAGGTTTTAACTGCAAATGTGAGAATATTCTAAATGTCAGGGTGGaaaa-ttttaaaaataattttatagtaatttttattttatagtaatttttttCATCATAGTGACATTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTAGA--CATTTAAGTCAAGATTCTAGGAAGTTG---TTCTAA-----------------------------------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------------GAGCCATGTTTCAAATAGTTGAGAACTTACTATATCAAAGATTCTTGATTAT-TAAAATGCCAGTTGCTTTTAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATGTGG-ACATAATATTATGGTCTGAAGAATATTTGCGTAAATTTATCCCTCATATGATCAGAAGAACAA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125027129 852 - 192294377 TTCTAAATATTTGGAAGATATTATATAATTCTTTAATAAGCTCCTGTGTCTACAAATGGTTCAGA-T-TAACTCAATATCCATGATTAAACGTCTATAAAACCAAGGCACTGTTATTTAGTGGAGACTTGCTGGCTATTCTATGAGAGCAGTTATTGTGAGGTATTGTTATTGTAATCTCATCCTCTCATAAAAGTGTATCATATTACTCATAACTGGCCCTTCATATTCTATTCCTATTTTGGTATTTTAGAATAAGATATCTTTGAAACACTTGAATTCAAAGAGAGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTTTTA-TCTAAATTCTAAGAATAATCACAATAGGTTTTAACTGCAAATGTGAGAATATTCTAAATGTCAGGGTGGAAAAGTTTTAAAAATA-----------------ATTTTATAGTAACTTTTTTCATCATAGTGACATTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTAGA--CATTTAAGTCAAGATTCTAGGAAGTTG---TTCTAAAGTCCAAAATTTAGTTTCATAAACAATTACATTATA------------------------------------------------------TATATA-ATATGCATATAAAATTAAAACACATGAGCCATGTTTCAAATAGTTGAGAACTTACTATATCAAAGATTCTTGATTAT-TAAAATGCCAGTTGCTTTTAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATGTGG-ACATAATATTATGGTCTGAAGAATATTTGCGTAAATTTATCCCTCATATGATCAGAAGAACAA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122289601 848 - 180432695 TTCTAAATAGTTGGAAGATATTATATAATTCTTTAATAAGCTCCTGTGTCTACAAATGGTTCAGA-T-GAACTCAACATCCATGATTAAACATCTATAAAATCAAGGCACTGTTATTTAGTAGAGACTTGCTGGCTATTC--TGAGAGCAGTTATTGTGAGACATTGTTATTGTAATCTAATCCTCTCATAAAAGTGTATCATATTACTCATAACTGGCCCTTCATATTCTATTCctattttggtattttagaaTAAGATATCTTTGAAACACTTGAATTCAAAGAGAGAAtctgaatagtttttaaaatgtcaatgaaaTGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTCCAAACTTTCTGGAACATTTTTTA-TCTAAATTCTAAGAACAATCACAATAGGTTTTAACTGCAAATGTGAGAATATTCTAAATGTCAGGgtggaaaagttttaaaaata-----------------attttatagtaatttttttcatcatagtGACATTGtgctaaa--tttttttaagtcaaatattACTGTAGA--CATTTAAGTCAAGATTCTAGGAAGTTG---TTCTAAAGTCCAAAATTTAGTttcatatacaattatatatta------------------------------------------------------tatat--atatgcatatataattaaaACACATGAGCCATGTTTCAAATAGTGGAGAACTTATTATATCAAAGATTCTTGATTAT-TAAAATGCCAATTGCTTTTAGGCACACATGC-TTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATGTGG-ACATAACATTATGGTCTGAAGAATATTTGCGTAAATTTATCCCTCATATGATCAGAAGAACAA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121545648 851 - 127223203 TTCTAAATACTTGGAAGATATTATATAATTCTTTAATAAGCTCCTGTGTCTACAAATGGTTCTGA-T-TAACTCAACATCCATGATTAAACATCTATAAAATCAAGGCACTGTTATTTAGTGGAGACTTGCTGGCTATTC--TGAGAGCAGTTATTGTGAGACATTGTTATTGTAATCTCTTCCTCTCATAAAAGTGTATCATATTACTCATAACTGGCCCTTCATATTCTATTCCTATTTTGGTATTTTAGAATAAGATATCTTTGAAACCCTTGAATTCAAAGAGAGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTTTTA-TCTAAATTCTAAGAACAATCACAATAGGTTTTAACTGCAAATGTGAGAATATTCTAAATGTCAGGGTGGAAAAGTTTTAAAAATA-----------------ATTTTATAGTAATTTTTTTCGTCATAGTGACATTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTAGA--CATTTAAGTCAAAATTCTAGGAAGTTG---TTCCAAAGTCCAAAATTTAGTTTCatatacaattatatatta------------------------------------------------------tatatatatatgcatataAAATTAAAACACATGAGCCATGTTTCAAATAGTGGAGAACTTATTGTATCAAGGATTCTTGATTAT-TAAAATGCCAATTGCTTTTAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATGTGG-ACATAACATTATGGTCTGAAGAATATTTGTGTAAATTTATCCCTCATATGATCAGAAGAACAG
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20092978 832 + 128169293 TTTTAAATACTTGAGAGTTATTATGTAATTCTTCAATAAACCCCTGTGTCTACAAATGGTTCAGGTT-TGACTCAACATCAATGATTAAACATCTATCAAATCAGGGCACTGCTGTTTAGTGGAGACTTGCTGGCTATTCTGTGAGAG----------TAGGTATTGTTATTGCAATCTCATCCTCTTATAAAAGTGTATCATATTACTCATAACCGGTCCTTCATATTCAATTCCTATTTTGGTATTTTAGAATAAAATATCTTTGAAACACTTGAATTCATAGATAGAATCTGAATGGTTTTTAAAATGTCAATGAAATGCTGTTTCTTCATGCTTGAACAACTAAAAATTGACTAAGGTGCTTCTCTTAAAACTTTCTGGAACATATTTTA-TCTAAATCCTAAGAAAAATCACAATCGTTTTTAACTACAAATGTAAGAATATGCTAAACGTCAGGGTGGAAAATTTTAAAGAATA-----------------ATTTTATAGTCA-TTTTTTCATTATTGTGATATTGTGCtaaatttttttttaaattaaatattaCTGTAGA--GGTTTAAGTCAAGATTTT---GAGTTG---TTCTAAAGTACAAAATTTAGTTTCATATGCAATGATATTATA------------------------------------------------------T------ATTTGCATATAAAA-----ATATATGAGTAATGTTTCTAATAGTTGAGAACTTACTATATCAAAGATACTTGATTATATGAAATACCAATTATTTTTAGGCACACATGTTTAAAATAATTACAAAGATAGGTGTGGTTGATTCTACTCTAACAGTTGACATTTATATGG-ACATAATATTATGATCTTCAGAGTATGCAGGTAAACTTATCCTGCATATGATCAGAAGATGAA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4117882 682 +  55844845 TTCtaaatattgaaaaattattatataatttCTCAATAAATACCTTTGCCTAAAAATGTTAAAAA-TGTAATAAGATATCAATGATTAAATGTCTCCCAAATCAAGGCAATGCAATTCACTGGAACACTGCTGGATATTCTTTGAGAG----------CAGCTATTATTATTATAAACCCATGCTTTTAGAAAAATGTACCATATAACCCAAAATCAGCCTTTCATATTCTATTCCTAATTTAGTGTGTTAGAATAAGGTATTTTTGAAACACTTGAATTCATAAGGAGAATCT---TTTTTTTTTAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGGCTCAAATTATTCTCCTCAAACTTTCTGAAACATTTTTTA-TCTAAATTCTAAGAACAATCACAATAGGTTTTAGCTACAAATGTGAGAATATTGTAAATGTCAGGGTGGATAAATTTCAAAATGA-----------------ATTTTATAGTCACCTTATTCATCATAGTGAAATTGTGCTAT---TTTTTTAGAAATATATTTTATTGTACACTCATTTTGGTCATGATTTTGTGAAGCTGCACTTTTAAAGGCTGAAATTTAGTTTCTTATGTGATGATTGTATA------------------------------------------------------TGTAT--ATATGCACACa---------------------------------------------------------------tat-tataattttaat---------------------------------------------------------------------atatatatGGCATATAAAATCA-------------------GTATGTTTATCTATTGTATCAA-----------
i canFam3.chr18                I 4416 C 0
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=219779.000000
s hg38.chr14_KI270725v1_random    131252 101 +    172810 TGCAAGATAGTTTATATCTGAAAGG--AAAAAAATCTTTATATGGTTCTGAAAGCGTAAATCATTAACAATTTGGATAATAATTAGCATAAAAATACACAAAC
s ponAbe2.chrUn                  5701709 100 +  72422247 TGCAAGATAGTTTATATCTGAAAGG--AAAAAAATCTTTATATGGTTCTGAAAGCCTAAATCATTAACAACTTGGATAATAATTAGCATAAAAATAGA-AAAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44155718 101 -  99891981 TGCAAGACAGTTTATATCTGAAAGG-AAAAAAAATCTTTAT-TGGTTCTGAAAGCCTAAATCATTAACAACTTGGATAATAATTAGAATAAAAATACACAAAT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124576368 102 - 198365852 TGCAAGATAGTTTATATCTGAAAGG-AAAAAAAATCTTTATATGGTTCTGAAAGCCTAAATCATTAACAACTTATATAATAATTAGAATAAAAATACACAAAT
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125027981 102 - 192294377 TGCAAGATAGTTTATATCTGAAAGG-AAAAAAAATCTTTATATGGTTCTGAAAGCCTAAATCATTAACAACTTATATAATAATTAGAATAAAAATACACAAAT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122290449 103 - 180432695 TGCAAGATAGTTTatatctgaaaggaaaaaaaaatctttatatggTTCTGAAAGCCTAAATCATTAACAACTTGTataataattagaataaaaatacacaaat
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121546499 103 - 127223203 TGCAAGATAGTTTATATCTGAAAGGAAAAAAAAATCTTTGTATGGTTCTGAAAGCCTAAATCATTAACAACTTGTATAATAATTAGAATAAAAATACACAAAT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20093810 102 + 128169293 AATAAGATAGTTTATATCTCAAAGG-AAAAAAAATCTATACATGGTTTTGAAAGCCCAAATGATTAACAAATGAAATAATAATTAGAATAAAAATACACAAAT
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4118564   0 +  55844845 C
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=775407.000000
s hg38.chr14_KI270725v1_random    131353 344 +    172810 ATGCCCTCTTCCTATCTGTAAGTAC------AAAGTGACAACAGAATC-AAAGCATGTGGCTATGTGCATGTTTATATTTCAAGACGCAGAGCACCCTATTCCTCTTCTCTGCCCTTTCTAGTTGGCACAATTCCTCATGAATCTAAGTGCAGCCATAGGGTGGATTACGGTGACCTGCCATTTGTATGGAACTGATCTC---T------ATTTTGGAAGTAATTAATGT---AAAAATATATTTTTAAAAGATAAGTTCAAATTTCAGGGCAAACTAGCATGGTTTCACCCCTTTTCTTTGTAACATTTTTTCTAATGTTGGAAAA-GTAAGATAGGCTTTAGTACGATTTTAAATAATAAGT
s ponAbe2.chrUn                  5701809 305 +  72422247 ATGCCCTCTTCCTTGCAGTAAGTAC------ACAGTGACAACAGAATC-AAAGCATGTGGC---------------------------------------TCCTCTTCTCTGCCCTTTCTAGATGGCACAATTCCTCATGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATTTGTATGCAACCGATCTC---T------ATTTTGGAAGtaattaatgt---aaaaatatatttttaaaagataatttCAAATTTCAGGGCAAACTAGCATGGTTTCACCCCTTTTCTTTGTAACATTTTTTCTAAGGTTGGAAAA-GTAAGGTAGGCTTTAGTAAGATTTTTAATAATAAGT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44155819 344 -  99891981 ATGCCCTCTTCCTAGCAGTAAGTAC------ACAGTGACAACAGAATC-AAGGCATGTGGCTATGTGCATGTTTATATTTCAAGATGCAGAGCACTCTATCCCTCTTCTCTGCCCTTTCTAGATGGCACAATTCCTCAGGAATCTATGTGCAGTCGTAGGGTGGATTAGGGTGACCTGCCATTTGTATGCAACTGATCTC---T------ATTTTGGAAGTAATTAAAGT---AAAAATATATTTTTAAAAGATAATTTCAAATTTCAGTGCAAACTAGCATGGTTTCACCACTTTACTTTGTAACACTTTTACTAAGGTTGGAAAA-GTAAGGTAGGCTTTAGTACGATTTTTAATAATAAGT
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124576470 345 - 198365852 CTGCCCTCTTCCTAGCAGTAAGTACACAGTGACAGTGACAACAGAATC-AAAGCACGTGGCAATGCACATGTTTATATTCCAAGATGCGGAGCATTCTATTCCTCTTCTCTGTCCTTTCTAGATGGCACAATTCCTCAGGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATCTGTATA-AATTGATCTC---C------ATTTTGGAAG----TAAAGT---GAAAATATATTTTTGAGAGATAATTTCAAATTTCAGTGCAAACTAGCATGTTTCCATCCCTTTTCTTTGTACCAGTTTTTCTAAGGTTGGGAAA-GTAAGGTAGGCTTTAGTATGATTTTTAATAATAAGT
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125028083 345 - 192294377 CTGCCCTCTTCCTAGCAGTAAGTACACAGTGACAGTGACAACAGAATC-AAAGCACGTGGCAATGCGCATGTTTATATTCCAAGATGCGGAGCATTCTATTCCTCTTCTCTGTCCTTTCTAGATGGCACAATTCCTCAGGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATCTGCATA-AATTGATCTC---C------ATTTTGGAAG----TAAAGT---GAAAATATATTTTTGAGAGATAATTTCAAATTTCAGTGCAAACTAGCATGTTTCCATCCCTTTTCTTTGTACCAGTTTTTCTAAGGTTGGGAAA-GTAAGGTAGGCTTTAGTATGATTTTTAATAATAAGT
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122290552 337 - 180432695 atgccCTCTTCCTAGCAGTAAGTAC------ACAGTGACAACAGAATC-AAAGCATGTGGCAATGTGCATGTTTATATTCCAAGATGCGGAGCACTCTATTCCTCTTCTCTGTCCTTTCTAGATGGCACAATTCCTCATGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATCTGTATA-AATTGATCTC---C------ATTTTGGAAg----taaagt---gaaaatatatttttgagagataatttcaaatttcagtgcAAACTAGCATGTTTCCATcccttttc-ttgttccagtttttCTAAGGTTGGGAAA-GTAAGGTAGGCTTTAGTACAA-TTTTAATAATAAGT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121546602 339 - 127223203 ATGCCCTCTTCCTAGCAGTAAGTAC------ACAGTGACAACAGAATC-AAAGCATGTGGCAATGTGCATGTTTATATTCCAAGATGCGGAGCACTCTATTCCTCCTCTCTGTCCTTTCTAGATGGCACAATTCCTCATGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATCTGTATA-AATTGATCTC---C------ATTTTGGAAG----TAAAGT---GAAAATATATTTTTGAGAGATAATTTCAAATTTCAGTGCAAACTAGCATGTTTCCATCCCTTTTCTTTGTTCCAGTTTTTCTAAGGTTGGGAAA-GTAAGGTAGGCTTTAGTACAATTTTTAATAATAAGT
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20093912 344 + 128169293 ATGCGCTCTTCCTAGCAGTAAATAC------ACAGTGACAACACATTCAAAAGCATGTGACTATGTGCACGTTTACATTCCAAGATGCAGGGTACTCTATTCCTCTCCTCTGCTCTTTCTAGAT-GCACAATTCCTTGTGAATCTAAGTGCAGTCATAGGGTGGATTAGGATCTCCTGTCATTTCTGTGCAATTGTTCTCTTTC------ACTCTGGAGGTAATTAAAAC---AAAAATATATTTTAGAAACACGATTTCCAATTGCAGTGCAAATTAGCATGTTTTTA---CTTGTCCCTGTAACAGATTTTCTAATGTTGGAAAA-ATAAGGTAGGCTTTAGTATGATTTTTGATTATAAGT
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4118564 349 +  55844845 ATACCCTCTTTTAAGCTGTAAAAAT------AGGATGATAATA----C-AAAGCATATGCCTGCATCCATTTTTATGTTCCAAGAAGCAGCACACTCTATTCCTTTTCTCTGCTCACTCTAGATGATACAGTTTTTCATAAATCAAAGTACAATCATAGGATAAAGCAGGG-GTTTTGATATTTGTATGGAACTGCTCTT---CTCTTTAGCTTTTGAGGTAATGAAGGCAAAAAAAAAAAAATTTAAGCATAAAATTTTAGATTACAATGCAAACTAGTATGTTTTCACCCATTCTGGTTGTCCCAGCTTCTCTAACACAAAAAAATATGAAATAGCCTTTAGTGTGATTTTTGATAATAACT
i canFam3.chr18                C 0 I 201
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=265775.000000
s hg38.chr14_KI270725v1_random    131697 103 +    172810 TTTCAAAGTGAGACGCAAAATGGTGGCGCCAACACATTTCAAATCTGCTACATTTTGAATACACTTATTGGAGAAAAGACCTTCTCATCATTTTTCTCTTACA
s ponAbe2.chrUn                  5702114 103 +  72422247 TTTCAAAGTGAGACGCAAAATGGTGGCGCCAACACATTTCAAGTCTGCTACATTTTGAATACACTTATTGGAGAAAAGACCGTCTCATCATTTTTCTCTTACA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44156163 103 -  99891981 TTGCAAAGTGAGACACAAAATGGTGGCGCCAACACATTTCAAGTCTGCTACATTTTGAACACACTTATTGGAGAAAAGACCTTCTCATCATTTTTCTCTTACA
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124576815 103 - 198365852 TTTTAAAGTGAGACACACAATGGTGGAGCCAACATATTTCAAGTCTGCTACATTTTGAGTACACTTACTGGAGAAAAGAACTTCTCATCATTTTTCTCTTACA
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125028428 103 - 192294377 TTTTAAAGTGAGACACACAATGGTGGAGCCAACATATTTCAAGTCTGCTACATTTTGAGTACACTTACTGGAGAAAAGAACTTCTCATCATTTTTCTCTTACA
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122290889 103 - 180432695 TTTCAAAGTGAGACACAAAATGGTGGAGCCAACATATTTCAAGTCTGCTACATTTTGAACACACTTACTGGAGAAAAGAACTTCTCATCATTTTTCTCTTACA
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121546941 103 - 127223203 TTTCAAAGTGAGACACAAAATGGTGGAGCGAACATATTTCAAGTCTGCTACATTTTGAATACACTTACTGGAGAAAAGAACTTCTCACCATTTTTCTCTTACA
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20094256 103 + 128169293 TTTCAAAGTGAGGCACAAAATAGTGGCACCAACATATTTGAAGTCTGCTACATTTTGAACACACGTCCTAAAGAAAATATATTCTCATCATTTTTCTCTTGTA
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4119114  98 +  55844845 TTTTAAAGTGAGATACAAAATGG-AGTACTAATGCATTTAAATTCTGCTACACTTTGAATACACTTATT----AACATGTCTTTGAATCACTTTATTTTTATA
i canFam3.chr18                I 201 C 0
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=433206.000000
s hg38.chr14_KI270725v1_random    131800 198 +    172810 GGAAAGGAAATAACATGTAcagttgacccttaagcaacacggaggtt-ggggtgctgg-cccccctgcacagtagaaaatccactataactttgactcccccaaaacttaactactaatagactactctaagccttacaaataaca----cagtcaattaacccatatttaatat--gttatatgtcttatatactgtattctt-------aa
s ponAbe2.chrUn                  5702217 206 +  72422247 GGAAAGGAAATAACATGTAcagttgacccttaagcaacacggaggtt-ggggtgctgg-cccccctgcacagtagaaaatccactataactttgactcccccaaaacttaactactaatagcctactttaagccttacaaataacacaagcagtcagttaacacatatttaatat--gttatatgtcttatatactgtattctt---aacaaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44156266 205 -  99891981 GGAAAGGAAATAACAGGTAcagttgacacttaagcaacacggaggttaggggtgctggccccccccgcacagtagaaaatccactataactttgactcccccaaaacttaactattaatagcctactggaagccttacaaataacacaagcagtcaattaacacatatttaatat--gctatatctcttatatactgtattctt------aaa
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124576918 212 - 198365852 GGAAAGGAAATAACATGTAcagttgaaccttaagcaacacggaggttaggggtgctgg-cccccttgcaccatagaaaatccactacaactttgactcctccaaaatgtaactaccaatagcccactgtaagccttgcaaataacacaagcagtcaattaacacacatttaatatgagttatatgtcttatatactgtattcttacaaacaaa
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125028531 212 - 192294377 GGAAAGGAAATAACATGTAcagttgaaccttaagcaacacggaggttaggggtgctgg-cccccttgcaccatagaaaatccactacaactttgactcctccaaaatgtaactaccaatagcccactgtaagccttgcaaataacacacgcagtcaattaacacacatttaatatgagttatatgtcttatatactgtattcttacaaacaaa
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122290992 212 - 180432695 GGAAAGGAAATAACATGTACAGTTGAACCTTAAGCAACACGGAGGTTAGGGGTGCTGG-CCCCCTTGCACCATAGAAAATCCACTATAACTTTGACTCCTCCAAAATGTAACTACCAATAGCCCACTGTAAGCCTTACAAATAACACAagcagtcaattaacacatatttaatATGAGTTATATGTCTtatgtactgtattcttacaaacaaa
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121547044 212 - 127223203 GGAAAGGAAATAACATGTAcagttgaaccttaagcaacacggaggttaggggtgctgg-cccccttgcaccatagaaaatccactataactttgactcttccaaaatgtaactaccgatagcccactgtaagccttacaaataacacaagcagtcaatgaacacatatttaatatgagttatatgtcttatgtactgtattcttacaaacaaa
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20094359 209 + 128169293 GGAAAGGAGATATCATGTAcagttgacccttaagcaactaagaggttaagggt-ccag-ccctcccactcagtagaaaatctactatatcttccactcgcacaaaacttaactactaacagcctactgtaagccttacaaataacataggcagtcaattagcacatatttaatac--gctatatgtatcctatactgtattcttacaaacaaa
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4119212   0 +  55844845 C
e tarSyr2.KE946558v1              121923 18562 +   1121937 I
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=-2935.000000
s hg38.chr14_KI270725v1_random    131998 1 +    172810 -c
s ponAbe2.chrUn                  5702423 1 +  72422247 -c
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44156471 1 -  99891981 -c
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124577130 1 - 198365852 -t
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125028743 1 - 192294377 -t
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122291204 1 - 180432695 -t
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121547256 1 - 127223203 -t
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20094568 1 + 128169293 -t
i calJac3.chr8                 C 0 C 0
s tarSyr2.KE946558v1              140485 1 +   1121937 g-
i tarSyr2.KE946558v1           I 18562 N 0
e canFam3.chr18                  4119212 0 +  55844845 C
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=364310.000000
s hg38.chr14_KI270725v1_random    131999 171 +    172810 atgccagagaaaagaaaaaag----aaaatcataaggaaaatatatttactaattattaaatggaagtagatgatcaaacaggtcttcatcctcatcctttccatggacagggtgtggataaggatgtagaattgttggtttttctaagtggacgtgcacagttcaaacccctgt
s ponAbe2.chrUn                  5702424 170 +  72422247 atgccagagaaaac-aaaaag----aaaatcataaggaaaatatatttactagttattaaatggaagtagatgatcaaacaggtcttcctcctcacccttttcatgggcagggtgtggagaaggatgtagaattgttggttttgctaagtggacctgcacagttgaaacccctgt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44156472 169 -  99891981 atgccagagaaaag-aaaaat----aaaatcataaggaaaatatatttcctagttattaaatgcaagtagatgatcaaa-aagtcttcatcctcatccttttcatgggcaggatgtggagaaggatgtagaattgttggttttgctaagtggatctgcacagttcaaacccctgt
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124577131 170 - 198365852 aagccagagaaaag-aaaaag----aaaatcataaggaaaatatattcactagttattagatggaagtaggtcatcaaaaaggtcttcatcctcatccttttcatgggcagggtgtggagaaggatgtagaattgttggttttgctaagtggacctgcacagttcaaacccctgt
i rheMac3.chr3                 C 0 C 0
s macFas5.chr3                 125028744 170 - 192294377 aagccagagaaaag-aaaaag----aaaatcataaggaaaatatattcactagttattagatggaagtagatcatcaaaaaggtcttcatactcatccttttcatgggcagggtgtggagaaggatgtagaattgttggttttgctaagtggacctgcacagttcaaacccctgt
i macFas5.chr3                 C 0 C 0
s papAnu2.chr3                 122291205 170 - 180432695 aagccagagaaaag-aaaaag----aaaatcataaggaaaatatattcactACTCTTTAGATGGAAGTAGATCATCAagaaggtcttcatcctcatccttTTCATGGGCAGGGTGTGGAGAAGGATGTAGAATTGTTGGTTTTGCtaagtggacctgcacagttcaaaccccTGT
i papAnu2.chr3                 C 0 C 0
s chlSab2.chr21                121547257 170 - 127223203 aagccagagaaaag-aaaaag----aaaatcataaggaaaatatgttcactagttattagatggaagtagatcatcaaaaaggtcttcatcctcatccttttcatgggcagggtgtggagaaggatgtagaattgttgcttttgctaagtggacctgcacagttcaaacccctgt
i chlSab2.chr21                C 0 C 0
s calJac3.chr8                  20094569 165 + 128169293 atctcagagaaaag-aaaaagtaaaaaaatcataagaaaaatatatttactagttattaaatggaagtagatcatcataaaggtcttcagcctcatctacttcatgagcagggtgaggagaaggaggtag---------tcttgctaactggaccggcaaagttccaacctctgc
i calJac3.chr8                 C 0 C 0
e canFam3.chr18                  4119212   0 +  55844845 C
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=239511.000000
s hg38.chr14_KI270725v1_random    132170 102 +    172810 ggagcaaaggccaactgTATAGCCATTGAATAGTAATTTATTTTTAGAAATTAACCACACTAAAATACTCTTAGAAGGATGCCAAGAAAAAAAATGAATAAG
s ponAbe2.chrUn                  5702594 102 +  72422247 ggtgcaaaggccaactCTATAGCCATTGAACAGCAATTTAGGTTTAGAAATTAACCTCACTAAAATGCTCTTAGAAGGATGCCAAGAAAAAAAATGAATAAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44156641 102 -  99891981 tgtgcaaaggccaactgTATAGCCATTGAATAGCAATTTATTTTTAGAAATTAACCTCACTAAAATACTCTTAGAAGGATGCCAAGACAAAAAATGAATAAG
i nomLeu3.chr17                C 0 C 0
s rheMac3.chr3                 124577301 102 - 198365852 tgtgcaaaggccaactgTATAGCCATTGAATAGCAATTTGTTTTTAGAAATTAGTCTAACTAAAATATTCTTAGAAGGATGCCAAGAAAAAAAATTAATAAG
i rheMac3.chr3                 C 0 N 0
s macFas5.chr3                 125028914 102 - 192294377 tgtgcaaaggccaactgTATAGCCATTGAATAGCAATTTGTTTTTAGAAATTAGTCTAACTAAAATATTCTTAGAAGGATGCCAAGAAAAAAAATTAATAAG
i macFas5.chr3                 C 0 I 2
s papAnu2.chr3                 122291375 102 - 180432695 TGTGCAAAGGCCAACTGTATAGCCATTGAAtagcaatttatttttagaaatgagtCTAACTAAAATATTCTTAGAAGgatgccaagaaaaaaaatgaataag
i papAnu2.chr3                 C 0 I 2
s chlSab2.chr21                121547427 102 - 127223203 tgtgcaacggccaactgTATAGCCATTGAATAGCAATTTATTTTTAGAAATGAGTCTAACTAAAATATTCTTAGAAGGATGCCAAGAAAAAAAATGAATAAG
i chlSab2.chr21                C 0 N 0
s calJac3.chr8                  20094734  93 + 128169293 tgtccaaggatcaactgCATAACCATTGAACAGCAATT--------GAAATTAATTTTACTAAAATAGTCTTAGAAGGATGCCAAGA-AAAAAATAAATAAG
i calJac3.chr8                 C 0 C 0
s canFam3.chr18                  4119212  98 +  55844845 GGAATAGAGATAGCATCTATATCCATTAAACGGCAATTTATTTCTAGCAATTAATCTTGCAGAAATACTCTTACAAATATGCCAAGGGGAAAAAAAAG----
i canFam3.chr18                C 0 C 0
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=1245.000000
s hg38.chr14_KI270725v1_random    132272  7 +    172810 TATTt----tt
s ponAbe2.chrUn                  5702696 11 +  72422247 TATTTTTGGTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44156743 11 -  99891981 TATTTTTGGTT
i nomLeu3.chr17                C 0 C 0
s macFas5.chr3                 125029018  9 - 192294377 --TCCTTGGTT
i macFas5.chr3                 I 2 C 0
s papAnu2.chr3                 122291479  9 - 180432695 --tCTTTGGTT
i papAnu2.chr3                 I 2 C 0
s calJac3.chr8                  20094827  7 + 128169293 CATCTTT----
i calJac3.chr8                 C 0 N 0
s canFam3.chr18                  4119310 10 +  55844845 GATCTTCAGT-
i canFam3.chr18                C 0 C 0
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=5949.000000
s hg38.chr14_KI270725v1_random    132279 7 +    172810 catctat
s ponAbe2.chrUn                  5702707 7 +  72422247 CATCTAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr17                 44156754 7 -  99891981 CATCCAT
i nomLeu3.chr17                C 0 N 0
s macFas5.chr3                 125029027 7 - 192294377 CATCCAT
i macFas5.chr3                 C 0 N 0
s papAnu2.chr3                 122291488 7 - 180432695 CATCCAT
i papAnu2.chr3                 C 0 N 0
s canFam3.chr18                  4119320 7 +  55844845 GAGTTAT
i canFam3.chr18                C 0 C 0
e panTro4.chr7_GL390646_random     17334 3000 +     53068 M

a score=1845.000000
s hg38.chr14_KI270725v1_random  132286 4 +   172810 ttca
s ponAbe2.chrUn                5702714 4 + 72422247 TTCA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2       41885 4 -    50530 ttca
i nomLeu3.chrUn_GL397889_2     N 0 C 0
s canFam3.chr18                4119327 4 + 55844845 TTTA
i canFam3.chr18                C 0 C 0
e panTro4.chr7_GL390646_random   17334 3000 +    53068 M

a score=3206.000000
s hg38.chr14_KI270725v1_random   132290 4 +    172810 tcat
s gorGor3.chr7                 54356989 4 + 158137892 tcat
i gorGor3.chr7                 N 0 C 0
s ponAbe2.chrUn                 5702718 4 +  72422247 tcat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        41889 4 -     50530 tcat
i nomLeu3.chrUn_GL397889_2     C 0 C 0
s canFam3.chr18                 4119331 4 +  55844845 TTAT
i canFam3.chr18                C 0 N 0
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=546.000000
s hg38.chr14_KI270725v1_random   132294 1 +    172810 t
s gorGor3.chr7                 54356993 1 + 158137892 t
i gorGor3.chr7                 C 0 I 130
s ponAbe2.chrUn                 5702722 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        41893 1 -     50530 t
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=11639.000000
s hg38.chr14_KI270725v1_random   132295 82 +    172810 tcatttcattatttcatttcatcatttcatttcctcatttcatctcatttcatttcatt---tcatttcatcctttcatttcatc
s ponAbe2.chrUn                 5702723 80 +  72422247 tcatttcatttcatcatt---tcatttcatttcctcatttca--tcatttcatttcatttaatcctttcatttcatcatttcatc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        41894 64 -     50530 tcatttcatt-----------tcctttcatttcctcatttca--tcatttcatttcatt--------acatcctttcatttcgtc
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr7                 54356994 130 + 158137892 I
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=1023.000000
s hg38.chr14_KI270725v1_random   132377 3 +    172810 att
s gorGor3.chr7                 54357124 3 + 158137892 att
i gorGor3.chr7                 I 130 I 24
s ponAbe2.chrUn                 5702803 3 +  72422247 att
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        41958 3 -     50530 ctt
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=3691.000000
s hg38.chr14_KI270725v1_random   132380 24 +    172810 tcatctcgtcatttcatctcattt
s ponAbe2.chrUn                 5702806 24 +  72422247 tcatctcatcatttcatttcattc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        41961 20 -     50530 tcatctcatcctttcacctc----
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr7                 54357127 24 + 158137892 I
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=1779.000000
s hg38.chr14_KI270725v1_random   132404 5 +    172810 tatca
s gorGor3.chr7                 54357151 5 + 158137892 tatca
i gorGor3.chr7                 I 24 I 67
s ponAbe2.chrUn                 5702830 5 +  72422247 tttca
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        41981 4 -     50530 -atca
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=14746.000000
s hg38.chr14_KI270725v1_random   132409 80 +    172810 tttcatctcattctttcatttcatcatttcatctcaacatttcatttcatttcatcttttcacttcatctcatcatttca
s ponAbe2.chrUn                 5702835 80 +  72422247 tttcatttcatcatttcatttcatcatttcatctcaacatttcagttcatttcatcatttcacttcatctcatcatttca
i ponAbe2.chrUn                C 0 I 5
s nomLeu3.chrUn_GL397889_2        41985 72 -     50530 tttcatctcatcatttcatttcatcatttcatttcattctttaatttcatttc-----ctcatttcatttcatcatt---
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr7                 54357156 67 + 158137892 I
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=2443.000000
s hg38.chr14_KI270725v1_random   132489 18 +    172810 tcatctcatgattttatt
s gorGor3.chr7                 54357223  5 + 158137892 tc-------------att
i gorGor3.chr7                 I 67 I 26
s ponAbe2.chrUn                 5702920 18 +  72422247 tcatctcgtcatttcatt
i ponAbe2.chrUn                I 5 C 0
s nomLeu3.chrUn_GL397889_2        42057 18 -     50530 tcatCTCAACATCTCATT
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=4593.000000
s hg38.chr14_KI270725v1_random   132507 24 +    172810 tcatctcatcatttcatttcatct
s ponAbe2.chrUn                 5702938 24 +  72422247 tcatcatttcatttcatttcatct
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        42075 24 -     50530 TTATTTCATCATTTTACTTCATCT
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr7                 54357228 26 + 158137892 I
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=-927.000000
s hg38.chr14_KI270725v1_random   132531 2 +    172810 tt-
s gorGor3.chr7                 54357254 2 + 158137892 tt-
i gorGor3.chr7                 I 26 I 31
s ponAbe2.chrUn                 5702962 2 +  72422247 tt-
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        42099 2 -     50530 -CA
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=2866.000000
s hg38.chr14_KI270725v1_random   132533 17 +    172810 tcatctca-------tcatttcat
s ponAbe2.chrUn                 5702964 24 +  72422247 tcatctcatttcatttcatttcaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        42101 17 -     50530 TCATTTCA-------TCATTTCAT
i nomLeu3.chrUn_GL397889_2     C 0 M 2506
e gorGor3.chr7                 54357256 31 + 158137892 I
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=373.000000
s hg38.chr14_KI270725v1_random   132550 4 +    172810 ttca
s ponAbe2.chrUn                 5702988 4 +  72422247 ttca
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr7                 54357256 31 + 158137892 I
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=-283.000000
s hg38.chr14_KI270725v1_random   132554 2 +    172810 tc
s panPan1.JH650633             34779038 2 + 101998900 aa
i panPan1.JH650633             N 0 N 0
s ponAbe2.chrUn                 5702992 2 +  72422247 tc
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr7                 54357256 31 + 158137892 I
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=401.000000
s hg38.chr14_KI270725v1_random   132556 8 +    172810 ttttcatc
s ponAbe2.chrUn                 5702994 8 +  72422247 atttcatt
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr7                 54357256 31 + 158137892 I
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=1392.000000
s hg38.chr14_KI270725v1_random   132564 5 +    172810 tcatt
s gorGor3.chr7                 54357287 5 + 158137892 tcatt
i gorGor3.chr7                 I 31 I 23
s ponAbe2.chrUn                 5703002 5 +  72422247 tcatt
i ponAbe2.chrUn                C 0 C 0
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=91.000000
s hg38.chr14_KI270725v1_random   132569 1 +    172810 t
s ponAbe2.chrUn                 5703007 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
e gorGor3.chr7                 54357292 23 + 158137892 I
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=0.000000
s hg38.chr14_KI270725v1_random   132570 12 +    172810 catttcatcaat
e gorGor3.chr7                 54357292 23 + 158137892 I
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e ponAbe2.chrUn                 5703008  0 +  72422247 C
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=746.000000
s hg38.chr14_KI270725v1_random   132582 8 +    172810 tcatcatt
s gorGor3.chr7                 54357315 8 + 158137892 tcatcatt
i gorGor3.chr7                 I 23 I 134
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e ponAbe2.chrUn                 5703008 0 +  72422247 C
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=0.000000
s hg38.chr14_KI270725v1_random   132590 139 +    172810 tcatctcatctcatttcacttcatttcattgtttcatttcatttcatcatttcatttcatcacttcatctcaacatttcattgcgtcatttcacttcatctcatttcatcatttcatctcatgatttcatttcatttca
e gorGor3.chr7                 54357323 134 + 158137892 I
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e ponAbe2.chrUn                 5703008   0 +  72422247 C
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=60.000000
s hg38.chr14_KI270725v1_random   132729 2 +    172810 tc
s gorGor3.chr7                 54357457 2 + 158137892 tt
i gorGor3.chr7                 I 134 I 16
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e ponAbe2.chrUn                 5703008 0 +  72422247 C
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=0.000000
s hg38.chr14_KI270725v1_random   132731 21 +    172810 atttcatcatttcatttattt
e gorGor3.chr7                 54357459 16 + 158137892 I
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e ponAbe2.chrUn                 5703008  0 +  72422247 C
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=100.000000
s hg38.chr14_KI270725v1_random   132752 1 +    172810 c
s gorGor3.chr7                 54357475 1 + 158137892 c
i gorGor3.chr7                 I 16 N 0
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e ponAbe2.chrUn                 5703008 0 +  72422247 C
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=0.000000
s hg38.chr14_KI270725v1_random  132753 26 +   172810 atcatttcatcatttgacgtcatgtc
e nomLeu3.chrUn_GL397889_2       42118 2506 -    50530 M
e ponAbe2.chrUn                5703008  0 + 72422247 C
e panTro4.chr7_GL390646_random   17334 3000 +    53068 M

a score=26477.000000
s hg38.chr14_KI270725v1_random  132779 485 +   172810 atctcatttcatatcatttcatcatttcatcttttcattccatcatttcacttcatcatttcatttcatcatttcatttcctcatttcatcatttcatttcatcctttcatcattccatctcatcatttcatcgtttcgtttcattatttcatttcagcatttcttctcattgttgcatttcgtcatttcattatttcatcatttcacttcatctcatcatttcatctcatgatttcatctcatctcatttcatcttttcatctcatcatttaatttcatcatttcatttcatct-----tttcatctcg---tcatttcatttgatcatttcatttcatcaattcatttcatcatttcatttcattatttcatcatttaatcatttaacttcat---ttcatcatttcatcatttcatatcatttcttcatttcaccatttgatcttctcatttcatttcacttcatcatttcatcatttcatttcctcatttca
s ponAbe2.chrUn                5703008 462 + 72422247 atttcat--catttcatttcatcatttcatttcctcatttcattatttcatttcatcatttcatttcattctttcat-----catttcatcatttcatttcatcatttcatcatttcacttcatcatttcatttcctcatttcattatttcatttcatcatttc--------atttcatttcatcgtttcatcatttcatc---tcatttcatcctttcatttcatttcatcacttcatctcatc--attgcattttgtcatttcatcattttatttcatcatttcacttcatctcatcatttcatcacgatttcatttcatctcatgatttcatttcatc---tcatttcatcttttcatctcgtcatttaat---ttcatcatttcatttcatcaattcatcatttcatcatttcatttcatttcattatttcatcattgaatc-----atttcacttcatttcatcatttcgt---ttcatttcatcatttca
i ponAbe2.chrUn                C 0 C 0
e nomLeu3.chrUn_GL397889_2       42118 2506 -    50530 M
e panTro4.chr7_GL390646_random   17334 3000 +    53068 M

a score=489.000000
s hg38.chr14_KI270725v1_random   133264 7 +    172810 tttcacc
s panPan1.JH650633             99573961 7 + 101998900 tcctacc
i panPan1.JH650633             N 0 I 246
s ponAbe2.chrUn                 5703470 4 +  72422247 ---tatc
i ponAbe2.chrUn                C 0 C 0
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=10818.000000
s hg38.chr14_KI270725v1_random   133271 217 +    172810 atttcatcatttcatcattccatttcatcatttcattacatttcatcatttcacttcatctcatcatttcatctcatgatttcatttcatctcatcatttcatcttttaatctcatttcatttaatcatttcgtttcattacaccttttcatttcatttcatcatttcatttcatcatttcatatcatttcctcaattcatcatttcatcttttcat
s ponAbe2.chrUn                 5703474 187 +  72422247 atttcttcatttcatgatt-----tgatcttttcatttcatttcatcatttcatttcatttcatcatttcacttcatcatttcatttc-----------------------ctgatttcatttcaccatttcagttcgt--catttcatcatttcatttcatcattccatttcatcatttcatttcatttcatcatttcatcatttcatctcatcat
i ponAbe2.chrUn                C 0 C 0
e panPan1.JH650633             99573968 246 + 101998900 I
e nomLeu3.chrUn_GL397889_2        42118 2506 -     50530 M
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=7436.000000
s hg38.chr14_KI270725v1_random   133488 47 +    172810 ttcatttcatcatttcatcatttcatttcatcatttcacttcattat
s ponAbe2.chrUn                 5703661 44 +  72422247 ttcatcctttcatttcattatttcatttcatcatttcatctcat---
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chrUn_GL397889_2        44647 47 -     50530 ttcatgtcttcatttcatcattttatcaattcatttcatttcatcat
i nomLeu3.chrUn_GL397889_2     M 2506 C 0
e panPan1.JH650633             99573968 246 + 101998900 I
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=546.000000
s hg38.chr14_KI270725v1_random   133535 2 +    172810 tt
s panPan1.JH650633             99574214 2 + 101998900 tt
i panPan1.JH650633             I 246 N 0
s nomLeu3.chrUn_GL397889_2        44694 2 -     50530 tt
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                 5703705 0 +  72422247 C
e panTro4.chr7_GL390646_random    17334 3000 +     53068 M

a score=90011.000000
s hg38.chr14_KI270725v1_random  133537 391 +   172810 catttcatttcaccatttcatgtcatcatttcatcatttcatcatttcatttcatttcaGTGATACATGTATTTAAGTGCTAATGCGATGCCCAGGAGACACCCTATTTCCCTTTGTAAAACACCTCCTTCAACAAAAGGCAACTACTCATGGCTGGCTAAGTCTACAGGGACACCAGCCTCTCTTCAACCACCCAATTTCATTTAGAACCTCAAACAGCACCTCAGTTTCATAAAAACCTAAAACATAAACACAACACTTGGTTGTAAGTGAGCCAACAG----TTATCTCTTTCTCTGCTCAAGGCTTAAGGCCATGTCTCCCCAACTACATTCAGTGGAAGAAAAGA-TCCCCTGGACAAATAAGTTTGAGAATTGTTGTTGCAGGAATTCTC
s ponAbe2.chrUn                5703705 388 + 72422247 cattttatttcatcatttcat--------ttcatcatttcatcatttcatttcatttcaGTGATAAATGTATTTAAGTGCTAATGTGATGCCCAGGAGACACCCTATTTCCCTTTGTAAAGCACCTCCTTCAACAAAAGGCAACCTCTCATGGCTAGCTAAGTCTACAGGGATACCAGCCTCTCTTCAACCACCCAATTTCATTTAGAACCTCAAACAGCACCTCAGTTTCATAAAAACCAAAAACATAAACACAATACTTGGTTGTAAGTGAGCCAACAGTTTCTTGTCTCTTTCTCTGCTCAAGGCTTAAGGCCGTGTCTCCCCAATTACGTTCAGTGGAAGAAAAGATTCCCCTGGACAAATAAGTTTGAGAACTGTTGTTGCAGGAGTTCTC
i ponAbe2.chrUn                C 0 I 95646
s nomLeu3.chrUn_GL397889_2       44696 386 -    50530 aatttcatttcataatttcat-----caatt--tcatttcatcatttcatttcaCTACAGTGACACACGTATTTAAGTGCTAATGTGATGCCCAGGAGACACCCTATTTCCCTTTGTATAACACCTCCTTCAACAAAAGGCAACCT-TCATGGCTGCCTAAGTCTACAGGGATACCAGCATCTCTTCAAACACCCAATTTGATTTAGAACCTCAAACAGCACTTCAGTTTCATAAAAACCTAAAACATAAACACAACACTTGGTTGTAAATGGGCCAAAAGTTTCTTGTCTCTTTCTCTATTCAAGGCTTAAGGCCGTGTCTCCCCAACTACATTCAGTGGAAGAAAAGA-TCCCCTGAAAAAA-ACGTTTGAGAACTGTTGTTGCAGGACTTCTC
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e panTro4.chr7_GL390646_random   17334 3000 +    53068 M

a score=47725.000000
s hg38.chr14_KI270725v1_random  133928 599 +   172810 AGAACCTTCAAAACACAAATCCTCATCCGCAGGGATCTTCAGGAGGGAGATGGCTGATGCAGCACAACTTTCTTTCACAGGAGTACCTTGCAGAATACAGTATGAGATACAGAAAGGCTGCATTGAGTCTTTTTAATGGCCCGGGCCTTGGTGGGGGTGGGGTAGGAGCTCT----------------GAGTAGGAACATTCAGGTGGCTTTTTTTTTCTCCTTATTGGCAAAACTGTGTGTACACCATGAATGAAGCTGGTCTCCCTTATCCATATCAAAACTAAATCCAAATTAATTGGCTAAATTGGGACTCAACACCTCCAGGAGCCACGCGGCAGAAAGCCCCAACACACTTTGAATTAGCTCACCTCATCATATTTGAGGAAAGCAAAACGCTTATGACCAGTGTGCTGCTAATACAAGTCTACAGATAATGCGGTATGAAAAACTAGTTTTCCCAATCATAGCTGGCATAGTCCACATTTTGCATTACACTTTTCCCCCTTTTTTTAAATTTTAAACACAGGTCTTTCTCTCTTCTTTTtttaaattttaattaaattatacaagac-gagtctcagtatgttgcccaggctggtcttcaactcctgag
s nomLeu3.chrUn_GL397889_2       45082 613 -    50530 AGAACCTTCAAAACACAAATCCTCATCCGCAGGGATCTTCAGGAGGGAGACGGCTGATGCAGCACAACTTTCTTTCACAGGAGCATCATGCAGAATACAGTATGAGATACAGAAAGGCTGCATTGAGTCTTTTGAAGAGCTCGGGGCTTGGTGGGGGTGAGGTAGGAGCTCTCCAGATAGCATCTAATGAGTAGGAACATTCAGGTTGCTTTCTTTTTC--CTTATTAGCAAAACTGTGTGTGCACCATGAATGAAGCTGGTCTCCCTTATCCATATCAAAACTAAATCCAAATTAATTGGCTAACTTGGGACTCAACACCTCCAGGAGCCACGCAGAAGAAAGCTCCACCACACTTTAAAGTAGCTTACCTCATCATATTTGAGGAAAGCAAAACGCTTATGACCAGTATGCTGCTAATACAAGTCTACATATAATGCTGTGTGAAAAATTACTTTTCCCAGTCATAGCTGGCACAGTCCACATTTTGCATTAAACTTCCCCCCCTTTTTA-AAATTTTAAACACAGGTCTTTTTCTCTTCTTTTTTTAAATTTTAATTGAATTCTACAagactgagtctcagtatgttgcccaggctggtcttgaacccccggg
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                5704093 95646 + 72422247 I
e panTro4.chr7_GL390646_random   17334 3000 +    53068 M

a score=388953.000000
s hg38.chr14_KI270725v1_random  134527 1557 +   172810 ctcaagcgatacatccgtctccacctcccaaagtgctgagattacacgcctgatacactgtgcctggccttaaacacaaatcttaattCATTCTTACAATTATTCTGAGGTTACAAAAATGGAAGGGGAAGAAAAATGGCAAGCAAATAGGCTGACTTTGGCTTCATTATTTGGAAGGACAGTTTGCTCCGTTAAAACACACTACTGCCTACAAAGGCCAAGACAACAGAAAAATACAGACTTACATAAATAGATTTTATATGTGACAGCAGTTTGAACGGAGACTTTTTCAATGCAA-TGAGAAACAGCTGTGCTTGGGAATAAATGACAACGATTTTTTTTTATCTCA---GCTGTCCTGAGAGCATGTCTCTACATCTCTACCTGCATTCTGGAATCAGGGAGAAAGTCAAAACGGAC---AAGACACTAGATcagccgtgtccaaccctttgactacaaggacttttccgcctatctgtggtggtgggtatcatgaaaattatgcaaaaacctttt-gtttttttttaagctcatcagctgttgttagcattagtgtattttatgtgtggcccaggagcattcttcttccaatgtggccctaagaagccaaaatactggacacctgtgCACTAGATCAAAAGGCTACTCCTTCTGGAAGCAACTGTAAAGAATTTCTGACATTATCTTGACATGAAAACCAATAGATAGTGGGACAGAATGCAAAATCTTCAAGAATTTTTCCTGTC-----ttttttttttttttgagtcacggtcttgctctgtggcccaggctggagtacactggtgagctcacagctcagtgcaggatcaagtgctcctcccacctcagccacagtagtagctgggactacagatgtgcacaaccacccctggctaacattttatttttt--------gtagagacagggtctctctatattgtccaggttggtctcaaactccttgactcaagggatccaggacaggataacaggtgggagccaccacacctggccATGTGCATGAACTTTTAAGACAAACAAAAGGCCCCACAAAAGTTAAGGTTTTTCCACCTAATTTCCAGGGGATCTTTTGGTGCAAGGATGAGAAACCCTTAAAAGTACACAGACAACTCCAAAGATTCAAGACAGTTCATTCGGGCTGAGCCAGCTCACTGGGCAGACTGACCTTCAAAAAAGGCCCACCCATGACATACACCAGATGGCTCTACAAGAATCTCTTCAGTCCTCAGGGTCCCTAAGATACTGGACAGAGATAGGAAAGCAAACCCATTTGCTTCTTCCTGCAGGAAACCCCTTGAGGTCAAGACCCCACAATCAGACAAGGATGGAGTGGCTCACCCTCAGTAAACAGGCCAAACTCAAGGTGGTATAATGTCTTAACCAAGAGTGTGGGCCTCCAGGTCTGACTCCCATCTGAGTTCTCCTTTAATAACCACACTTTGATAATTCTCCTTAACAGGGGTTCCTggcaagtcagttcttcctcaggccttcggtttcctcacctacaagatgagagggctggaccagatgGAAATTCAGGGTG
s panTro4.chr7_GL390646_random   20335 1565 +    53068 ctcaagcgatacatccgtctccgcctcccaaagtgctgagattacaggcctgagacactgtgcccagccTTAAACACAAATCTTAATTCATTCTTACAATTATCCTCAGGTTAGAAAAATGGAAGGGGAAGAAAAATGGCAAGCAGGTAGGCTGACTTCGGCTTCATTATTTGGAAGGACAGTTTGCTCGGCTAAAACAGACTACTGCCCACAAAGGTCAAGACAACAGAAAAATACAGACTTATATAAATAGATTTTATATGTGACAGCAGTTTGAATGGGGACTTTTTCAATGCAAATGACAAACAGCTGTGCTTGGGAATAAATGACAACAAATTTTTTT-ATCTCAACAGCTGTCCTGAGAGCACGTCTCTACATCTCTACCTGCATTCTGGAATCAGGGAGAAAGCCAAAACGGACGACAAGACACTAGATcagccgtgtccaaccctttgactacaaggacttttccgcctatctgtggtggtgggtatcatgaaaattatgcacaaacctttt----tttttttaagctcatcagctattgctagcagtagtgtattttatgtgtggcccaggagcattcttcttccaatgtggcactgagaagccaaacgactggacacctgtgCACTAGATCAAAAGGCTACTCCTTCTGGAAGCAACTGTAAAAAATTTATGACATTATCTTGACATGAAAACCAATGGATAGTGGGACAGAATGCAAAATCTTCAAGAAtttttcttattggtttttttttttttttttgagtcaaggtgttgctctgtggcccaggctggagtacactggtgagatcacagctcagtgcaggctcaagtgctcctcccgcctcagccacagtagtagctgggactacagatgtgcacaaccacccccggctaatattttatttttt--------gtagagacgaggtctcactacattgtccaggttggtctcaaactccttgactcaagggatccagaacaggataacaggtgtgagccaccacacctggccATGTGCATGAACTTTTAAGACCAACACAAGGCCCCACAAAAGTTAAGGTTTTCCCACCTAATTTCCAGGGTATCTTTTGGTGCAAGGATGAGAAGCCGTTAAAAGTATAGAGACAACTCCAAAGATTCAAGAGAGTTCATTCGGGCTGAGCCAGCTTACTGGGCAGACTGATCTTCAAAAAAGGCCCACCCATGACATACGCCAGATGGCTCTACAAGAATCTCTTCAGTCCTCAGGGTCCCTAAGATACTGGACAGAGCTAGGAAAGCAAACCCATTTGCTTCTTCCTGCAGGAAACCCCTTGAGATCAAGACCCCACAATCAGAAGAGGATGGAGTGACTCACCCTCAGTCAACAGGCCAGACTCAAGATCGTACAATGTCTTAACCAAGGGTGTGGGCCTCCAGGTCTGACTCCCATCTCAGTTCTCCTTTAATAAGCACACTTTGTTAATTCTCCTTAACAGGGGTTCCTggcaagtcatttcttcctcaggcctttggtttcctcacctacaagatgagagagccttaccaaatgGAAATTCAGGGTG
i panTro4.chr7_GL390646_random M 3000 C 0
s nomLeu3.chrUn_GL397889_2       45695 1569 -    50530 ctcaagcgatacatccgtctccgcctcccaaagtgctgggattacaggcctgagacactgtgcccggccTTAAACACAAACCTTAATTCATTCTTACAATTATCCTGAGGTTAGAAAAATGGAAGGGGAAGAAAAATGGCAAGCAGGTAGGCTGACTTCAGCTTCATTATTTGGAAGGACAGTTTGCTTGGTTAAAACACACTACTGCCCGCAAAGGCCAAGATAACAGAAAAATACAAACTTATATAAATAGATTTTATATGTGACAGCAGTTTCAATGGAGACTTTTTCAATGCAAATGACAAACAGCTGTGCTTAGGAATAAATGAAAACGAATTTTTTT-ATCTCAACAGCTGTCCTGAAAGCACCTCTCTACACCTCTACCTGCATTCTGGAATCAAGGAGAAAGCCAAAACGGACGACAAGACACTACATcagccgtgtccaaccctttgactacaaggacttttccgcctatctgtggtggtgggtatcatgaaaattatgcacaaacctttttttttttttttaagc---tcagctatcgttagcattagtgtattttatgtgtggtccaggagcattcttcttccaatgtggccctgagaagccaaaagactggatacctgtgCACTAGGTCAAAAGACTACTCCTTCTGGAACCAATTGTAAAGAATTTCCGACATTATCTTGACATGAAAACCAATGGATAGTGGGACAGAATGCAAAATCTTCAAGAATTTTTGTTGGt-----ttttttttttttttgagtcaaggtcttgctctgtggcccaggtttgagtaccctgatgagatcacagctcagtgcaggctcaagtgctcctcccgcctcagccacagtagtagctgggactacagatgtacacaaccacccctggctaatatgttattttttggagagacgtagagatggagtcttactatattgcccaggttggtctcaaactccttgactcaagggatccaggacaggataacaggtgtgagccaccacacctggccATGTGCATGAACTTTTAAGACAAACACAAGGCCCCATAAAAGTTAAGGTTTTCCCACCTAATTTCCAGGGGATCTTTTGGTGCAAGGATGAGAAGCCCTTAAAAGTACACAAACAACTCCAAAGATTCAAGACAGTTCATTCGGGCTGGGCCAGCCCACTGGGCAGACTGACCTTCAAGAAAGGCCCACCCATGACATACACCAGATGGCTCTCCAAGAATCTCTCCAGTCCTCAGGGTCCCTAAGGTACTGGACAGAGCTAGGAAAGGAAACCCATTTGCTTCTTCCTGCAGAAAACCCCTTGAGGTCAAGACCCCACAATCAGGTGAGGATGGAGTGGCTCACCCTCAGTCAACAGGCCAGACTCAAGGTGGTATAATGTCTTAACCAAGGGTGTGGGCCTCCAGGTCTGACTCCCAACTCAGTGCTCCTTTAATAACCAATCTTTGTTAATTCTCCTTAACAGGGGTTCCTggcaagtcagttctccctcaggccttccgtttcctcacctgcaagataagaaggctggaccagatgGAAATTCGGGGGG
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                5704093 95646 + 72422247 I

a score=-1080.000000
s hg38.chr14_KI270725v1_random   136084 1 +   172810 -G
s panTro4.chr7_GL390646_random    21900 1 +    53068 -G
i panTro4.chr7_GL390646_random C 0 C 0
s gorGor3.chr18                15241367 1 + 78787515 -G
i gorGor3.chr18                N 0 I 260
s nomLeu3.chrUn_GL397889_2        47264 1 -    50530 T-
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                 5704093 95646 + 72422247 I

a score=55790.000000
s hg38.chr14_KI270725v1_random   136085 262 +   172810 AAGGGGATGTCCGCGCACAACCCACCACCCCCCCCGACAGGACCCTGGACCCTCCATCCCAGTTCCCACCAGGCACCCGCCCCACAAATGGCGCTCAAGGTGAGGGCTGGTCCCGGGTCCTCCTGCTGCCGCATCAGCGAATGCATGAGGGACGGGAAGACTCCAAGGGCGCAATGCAGGCTCAAGGATGCAACTGGGCCAGGCGTGAACTGGGGCCCCGAGGGAGGTGTCTGAGCTCCTCCTGGAGCCCAGCCCGGGTCCC
s panTro4.chr7_GL390646_random    21901 260 +    53068 AAGGGGATGTCTACACGCAGCCCACTGCCCACCC--ACAGGACCCTGGAGCCTCCATCCCAGTTCCCACCATGCACCCGCCCCACAAATTGTGCTCAAGGTGAGGGCTGGTCCTGGGTCCTCCTGCTGTCGCATCAGCGAATGCAGGAGGGAGGGGAAGACTCCAAGGGCGCGACGTGGGCTCAAGGATGCAACTCGGCCAGGAGCGAACTGGGGCCCCGAGGGAGGTGTCCGGGCCCCTCCTGGAACCCAACCCGGGTCCC
i panTro4.chr7_GL390646_random C 0 C 0
s nomLeu3.chrUn_GL397889_2        47265 254 -    50530 AAGGGGATGTCCGCGCGCAGCCTAC--CCCGCCC--ACGGGCCCCTAGAGCCTCCATCCAAGTTCCCACCACGCACCCGCCCCACAAATCCTGCCCAAGGTGAGGGCTGGTCCCGGGTCCTCCAGCTGCCACATCAGCGAGTGCAGGAGGGA---GAAGCCTCCAAGGGGGCGACGCGGGCTCAAGGATGCAACTGGGCCAGGAGTGAACTGGAGCCAGGAGAGAGGTGTCTGGGCCGCTCCTGGAACCCAGCCCGGTCCC-
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr18                15241368 260 + 78787515 I
e ponAbe2.chrUn                 5704093 95646 + 72422247 I

a score=158141.000000
s hg38.chr14_KI270725v1_random   136347 385 +   172810 CGAACCCGTTACCTCCAGGGTCGGTATCTTCTGCTGGGTGAGGTCGTTCGACACAGCGCACTTGGTGCCCAGCCAGCAAAGGCTGCCAATGAAGATGCCAATGAGCTTCTGGAGCTGCCCGC-------------------------GGCCCCTGCGCCACCTTCCGCTAATGCCGCATCACCCCCGCCACCACCCTCCTTCTTCTCTCCCATCGCCTCTGCGCGCAGCGCCGCTCTATGCAGGCCACAGAGGCCGAGGCAGGGAGCCCGGGGCGCCGGCGCCTAGGCAAAGAACCCCCGACCCAGGAGAGCTGTACCAGGAGCGCCCCTCGGCGCTGCCCTTGCCAGGACGCCAGTGGAGCTAGCAGCCGAGTCTGCCGCTCCTGCCCTCAGAGCCGCAGCACCGGG-GG
s panTro4.chr7_GL390646_random    22161 385 +    53068 CGAACCCCTTACCTCCAGGGTCGGTATCTTCTGCTGGGTGAGGTCGTTGGACACAGTGCACTTGGCGCCCAGCCCGCGAAGACTGCCAATGAAGATGCCGATGAGCTTCTGGAGCTGCCCGC-------------------------GGCCCCTGCGCCACCTTCGGTGAACGCCGCATCACCCCCGCCACCGCCCTCCTTCTTCTCTCCCATCGCCTCCGCGCGCAGTGCCGCTCTATGCAGGCCACAGAGGCCGAGGCAGGGAGCCCGGGGTGCCGACGCCTAGGCAAAGAACCCCCGAGCCGGGGGA-CTAGACCAGGAGCGCCCCTTGGCGCTGCCCTTGCCAGGACGCCAGTGGAGCTAGCAGCCGAGTCTGCGGCTCCCGCCCTCAGAGCCGCGGCAGCGGGTGG
i panTro4.chr7_GL390646_random C 0 C 0
s gorGor3.chr18                15241628 381 + 78787515 CGAACCCCTTACCTCCGGGGTCGGTATCTTCTGCTGGGTAAGGTCGTTGGACACAGTGCACTTGGTGCCCATCCCGCGAAGGCTGCCAATGAAGATGACGATGAGCTTCCGGAGCTTCCCAC-------------------------AGCCCCTGCGCCACCTTCCGCGAACGCCGCATCACCCCCGCCACCGCCCTC---CTTCTCTCCCATCGCCTCCGCGCGCAGTGCCGCTCTATGCAGGCCACATAGTCCGAAGCCGAGAGCCGGTGGCGCCGGCGCCTGGGCAAAGAACCCCCGAGCCGGGAGA-CTGGACCAGGAGCGCCCCTCGGCGCTACTCTAGCCAGGACTCCAGTGGAGCTAGCAGCCGAGTCTGCGGCTCCCGCCCTCAGAGCTGCGGCAGCGGG-GG
i gorGor3.chr18                I 260 N 0
s nomLeu3.chrUn_GL397889_2        47519 395 -    50530 CGACCCCCTTACCTCCAAGGTCGGTATCTCCTGCTGGGTGAGGTCCTTGGACACAGCGCACTTGGTGCGCAGCCCGCGCCGGCTGCCCATGGAGATGCCGATGAGCTTCTGGAGCTGCCCACACTGCTGCAGCGCCCTACTGGCCATGGCCCCTGCGCCTCCCTCCGTGGCTGCTCCATCATCCGCGCCACCGCCCTC---CTTCTCTCCCATCGTCGCGGCGCACAGCGCCGCTCTATGCTGCCAGCAGCGGCCGAGGAAGGGAGCCCGGGGCGCGGGCGCCTAGGGGAGGAACCCGGGAGCCTGGAGAGCTGCAGCAGGAGTGCCCCTTGGCGCTGCGGGAGCCAGGACGCCG--GGAGTTGGCAGCCCTGTCTGCTGCTCCCGCCCTCAGAGCCGCG-----------
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                 5704093 95646 + 72422247 I

a score=36497.000000
s hg38.chr14_KI270725v1_random  136732 292 +   172810 AAAAATCCTCCGCGGCGGGGGTAAAAATCCGCGGCG-----GTGGCAAAAAGCCGCGGGAGTGGGGGCAAAAA-----------------AAAA----CACAAAAAGCCGTGGCGGCGGGGGTAAAAAGCTATGGCGGCAAAAAGTCTCAGCGGCGGGGACCAAAAAACCGCGGAGGCGGG-GGCAAAACGCCGCGGCATCGGGGG-----AAAAAGCCACG----------GCGGTGGGGGCTGATAGCTCCCGC-------GGCAAAAAGCCGCGGCGGCAAAAAGCTCGGGCGGTGGGGGAAAAAGCCGCGGCGGCGTGGG-CAAAAAGCCGCAAAAAG
s panTro4.chr7_GL390646_random   22546 296 +    53068 AAAAATCCTCCAAGGCGGGGGTAAAAATCCGCAGCG-----GTGGCAAAAAGCCGCGGCGCCGGGGGCAAAAAGCAGCGGGAGTGCGGGCAAAAGAACCACAAAAAGCCGCGATGGTGGGGGGAAAAAGCCACGGCAGCAAAAAGCCTCAGCGGCAGGGA-CAAAAAACCGCGGACGCGCG-GGCAAAACGCCACGGCGTCGGGGG-----AAAAAGCCACG----------GCGGCAGGGGCAAAAAGCTCCGGC-------GACAAAAACCCGC----------------GGCGGTGGGGGAAAAAGCCGCGGCGGCAGGGG-CAAAAGGCCGCAAAAAG
i panTro4.chr7_GL390646_random C 0 C 0
s nomLeu3.chrUn_GL397889_2       47914 278 -    50530 -----------GCGGCGGGGGCAAACAACCGCGGCGTCGGTGGGGCAAAAAGCCGCGGC---------------------------------------GGCCAAAAGCCCCGGCGGAGGGGGCAAAAAGCCTTGGCGG-AAAAAgcggcggcggcggggg-ctaaaagccgcggtggcggatggcaaaaagccgcggcggcggcgggggACAAAAAGCCGCGAAAAGCGGCTGCGGCGGGGGCCAAAAGCCGCGGCGGCAGGGGGCAAAAAGCCGGGAAA------------AGCGGAGAGGGCAAAAACCGCGGCTGCGGGGGACAAAAAGCCAGGAAAAG
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                5704093 95646 + 72422247 I

a score=477.000000
s hg38.chr14_KI270725v1_random   137024 2 +    172810 TA
s panTro4.chr7_GL390646_random    22842 2 +     53068 TA
i panTro4.chr7_GL390646_random C 0 C 0
s gorGor3.chr5                 57268609 2 + 165930986 TC
i gorGor3.chr5                 N 0 I 11
s nomLeu3.chrUn_GL397889_2        48192 2 -     50530 TA
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=2339.000000
s hg38.chr14_KI270725v1_random   137026 11 +    172810 GTGGCGGCGGG
s panTro4.chr7_GL390646_random    22844 11 +     53068 GTGGCGGCGGG
i panTro4.chr7_GL390646_random C 0 C 0
s nomLeu3.chrUn_GL397889_2        48194 11 -     50530 GCGACGGAGGG
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr5                 57268611 11 + 165930986 I
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=1407.000000
s hg38.chr14_KI270725v1_random   137037 3 +    172810 GGC
s panTro4.chr7_GL390646_random    22855 3 +     53068 GGC
i panTro4.chr7_GL390646_random C 0 I 22
s gorGor3.chr5                 57268622 3 + 165930986 GGC
i gorGor3.chr5                 I 11 I 49
s nomLeu3.chrUn_GL397889_2        48205 3 -     50530 GGT
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=9547.000000
s hg38.chr14_KI270725v1_random   137040 118 +    172810 AGAAAATCGCTGCGGTGGGGGCGAAAACCCACGACTGGGGG-----------------AAAAAGCCGCGGCGGCGGGGACAAAAACGAGCGGCA-----CGGAGCAAAAAGCCGCG----------------------TCCGCAAAACCCGCGGCGGTGGGG
s panTro4.chr7_GL390646_random    22880 157 +     53068 AGAAAACCGCGGCGGTGTGGGCGAAAACCCGCGACCAGGGGAAAAGGCAGCGGGGAGCAAAAAGCCGCGGCTGCAGGGACAAAAACGGGCGGCG-----GGGAGCAAAAAGCCGCGGCGGTGGGCGCAAAAAGCCGCATCGGCAAAACCCGCGGCGGCGGGG
i panTro4.chr7_GL390646_random I 22 I 57
s nomLeu3.chrUn_GL397889_2        48208  83 -     50530 -------------------GACAAAAAGC---------AGG-----------------GAAAAGCGGAAGCGGCGGGGACAAAAAGCTGCGGCAGCGGCGGGGACAAAAAGCTGCG----------------------------------GCAGCAGGGGGG
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr5                 57268625  49 + 165930986 I
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=474.000000
s hg38.chr14_KI270725v1_random   137158 11 +    172810 GAAAAAGCTGC
s nomLeu3.chrUn_GL397889_2        48291 11 -     50530 CAAAAAGCCGG
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr5                 57268625 49 + 165930986 I
e ponAbe2.chrUn                 5704093 95646 +  72422247 I
e panTro4.chr7_GL390646_random    23037 57 +     53068 I

a score=18128.000000
s hg38.chr14_KI270725v1_random   137169 103 +    172810 -AAAAACAGCGGCGACAGGTGCAAAAAGCCACGGCTGCGGAGGTAAAAATCCGCGGCGGCGAGGGCAAAAAGCCGCGGCGGCGGAGTCAAAAAGCCTCGGCGGC
s panTro4.chr7_GL390646_random    23094 103 +     53068 -AAAAGCAGTGGCGACAGGTGCAAAAAGCCACGGCGGCGGGGGTAAAAATCCGCGGCGGCGAGGGAAAAAAGCCGCGGCGAAGGAGTCAAAAAGCCTCGGCGGC
i panTro4.chr7_GL390646_random I 57 I 150
s nomLeu3.chrUn_GL397889_2        48302 100 -     50530 GAAAATCGGCGGCGGCGGGGGCAAACAGCCGTGGCGGCAGGGGGAAAAA--CGCTGCGGCGGGAAAAAGCGGCAGCGGCGGGGGA--TAAAAAGCCGCGGCGGG
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr5                 57268625  49 + 165930986 I
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=1864.000000
s hg38.chr14_KI270725v1_random   137272 30 +    172810 AAAAACCCGCGGTGGCGGGAGCAATAAGCC
s nomLeu3.chrUn_GL397889_2        48402 30 -     50530 AAAAAGCCTCGGCGACGGGGGCAAAAAGCC
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr5                 57268625 49 + 165930986 I
e ponAbe2.chrUn                 5704093 95646 +  72422247 I
e panTro4.chr7_GL390646_random    23197 150 +     53068 I

a score=1790.000000
s hg38.chr14_KI270725v1_random   137302 29 +    172810 GCGGGGGCAAAAAGACGCAGCGGCCAAAA
s panTro4.chr7_GL390646_random    23347 29 +     53068 GCGGGGGCAAAAAGACGCGGTGGCCAAAA
i panTro4.chr7_GL390646_random I 150 I 18
s nomLeu3.chrUn_GL397889_2        48432 13 -     50530 --------ACAAAGA-GCAGTG-------
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr5                 57268625 49 + 165930986 I
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=623.000000
s hg38.chr14_KI270725v1_random   137331 33 +    172810 GCCGCGCAGCGGGGAGTAAAAAGCCGCGTCGGC
s nomLeu3.chrUn_GL397889_2        48445 22 -     50530 -----GCGGCGGGGA-CAAAAAGCCGCA-----
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr5                 57268625 49 + 165930986 I
e ponAbe2.chrUn                 5704093 95646 +  72422247 I
e panTro4.chr7_GL390646_random    23376 18 +     53068 I

a score=10942.000000
s hg38.chr14_KI270725v1_random   137364 67 +    172810 AAAAGCCGCGGCAGCGGGGAGTAAAAAGCCGCGTCGGCAAAAGCCGCGGCGAT-GGGGGTAAAAAGCC
s panTro4.chr7_GL390646_random    23394 67 +     53068 AAAAGCCGCGGCGGCGGGGGGTAAAAAGCCGTGTCGACAAAAGCCACCGCGAT-GGGGGTAAAAAGCC
i panTro4.chr7_GL390646_random I 18 C 0
s nomLeu3.chrUn_GL397889_2        48467 68 -     50530 AAAAGACACAGCAGCCGGGGCAAAAAAACGAGGAGGCAAAAAGCCGCGGCGGCGGGGGGCAAAAAGCC
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e gorGor3.chr5                 57268625 49 + 165930986 I
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=-998.000000
s hg38.chr14_KI270725v1_random   137431  95 +    172810 -GCGTTAGCAAAAACCGCGGCGGCGGGGAGCAAAAAGCCGCCGCGG-TGGGCGCAAAAAGTCGCCGCGGCCAAA---------------------AAGCCGTGCCGGTGGCGGCGGCG-
s panTro4.chr7_GL390646_random    23461 116 +     53068 -GCGTTGGCAAAAACCGCGGCGGCGCGGAGCAAAAAGCCGCCGCGG-TGGGTGCAAAAAGTCATGGCGGCCAAAAGCCGCCGTGGCGGGNGCAAAAAGCCGTGACGGCGGCGGCGGCG-
i panTro4.chr7_GL390646_random C 0 C 0
s gorGor3.chr5                 57268674   6 + 165930986 ----------------------------------------------------------------------------------------------------------ATGGCG-------
i gorGor3.chr5                 I 49 N 0
s nomLeu3.chrUn_GL397889_2        48535 102 -     50530 GAGGAGGGAAAAAGCCCCAGCGAC-TGGAGCAAAAACCCGAGGCAGCCGGGTGTAAAAAGCCGCCGAGGCATAG----------------GCAAAAAGCCACGGCGGTGGGGGCAAAAA
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=2603.000000
s hg38.chr14_KI270725v1_random  137526 13 +   172810 GCAAAAAGCCGCG
s panTro4.chr7_GL390646_random   23577 13 +    53068 GCAAAAAGCCGCG
i panTro4.chr7_GL390646_random C 0 I 23
s nomLeu3.chrUn_GL397889_2       48637 13 -    50530 GGAAAAAGCGGCA
i nomLeu3.chrUn_GL397889_2     C 0 C 0
e ponAbe2.chrUn                5704093 95646 + 72422247 I

a score=1769.000000
s hg38.chr14_KI270725v1_random  137539 44 +   172810 GCGTCGGGGACAAAAAGCCGCGGCGTTGGGGGCGGGGGCAAAAA
s nomLeu3.chrUn_GL397889_2       48650 38 -    50530 GCGGCGGGGACAAAATGCCG------AGAAGGCCTGGGCAAAaa
i nomLeu3.chrUn_GL397889_2     C 0 N 0
e ponAbe2.chrUn                5704093 95646 + 72422247 I
e panTro4.chr7_GL390646_random   23590 23 +    53068 I

a score=0.000000
s hg38.chr14_KI270725v1_random  137583 104 +   172810 GCCGCGGCGGCGCGGGCCGAAAGCATCGGGGGCAAAAAAACACAAAAAGCCGCGGCGGCGAGGGAAAAAACCCGCGGCGGCGGGGGCAAAAAGCCGCGGTGGCA
e ponAbe2.chrUn                5704093 95646 + 72422247 I
e panTro4.chr7_GL390646_random   23590  23 +    53068 I

a score=3288.000000
s hg38.chr14_KI270725v1_random  137687 35 +   172810 AAAAGCCGCGGCGGCGGGAGCAAAAAGCCGCGGCG
s panTro4.chr7_GL390646_random   23613 35 +    53068 AAAAGCCGCGGCGGCGGGGGCAAAAAGCCGCGGCG
i panTro4.chr7_GL390646_random I 23 I 28
e ponAbe2.chrUn                5704093 95646 + 72422247 I

a score=0.000000
s hg38.chr14_KI270725v1_random  137722 7 +   172810 GTGGGGG
e ponAbe2.chrUn                5704093 95646 + 72422247 I
e panTro4.chr7_GL390646_random   23648 28 +    53068 I

a score=2274.000000
s hg38.chr14_KI270725v1_random  137729 24 +   172810 TAAAAAATCACGTCGGCAAAAGCC
s panTro4.chr7_GL390646_random   23676 24 +    53068 TAAAAAATCACGTCGGCAAAAGCC
i panTro4.chr7_GL390646_random I 28 I 877
e ponAbe2.chrUn                5704093 95646 + 72422247 I

a score=0.000000
s hg38.chr14_KI270725v1_random  137753 375 +   172810 TTGGCGGCCGGGGCAAAAAGGCGTGGCGGTGGGCGCAAAAAGTCGTGGCAGTGGGGTTAAAAAGCCGCGTCGGCAAAACCCGCGGCGGCGGGGGAAAAAGCTGCAAGAAGCCGCGGCGATGGGGGCAAAAAGCCGCGATGGCGGGGGCAAACAGCCCCGGCGGCAAAAACCGGCGGCGGCGGGAGCAAAAAGCCACAGCAGCAAAAAGCCGCAGCGGCGGGGCGCAAAAAGCCACGTCGGCAAAAGCCGTGGCGGCGGGGGCAAAAAGCCGCGGCGGCGGGGAGTAAAAAGCCGCGGTGATGGGGGTAAAAAGCCGCGTTGGCAAAAACCGCGGCGGCGGGGCGCAAAAAGTCGCCGCGGCGGGGCGCAAAAATC
e ponAbe2.chrUn                5704093 95646 + 72422247 I
e panTro4.chr7_GL390646_random   23700 877 +    53068 I

a score=-31.000000
s hg38.chr14_KI270725v1_random  138128 1 +    172810 C
s panPan1.JH650633             1385355 1 + 101998900 t
i panPan1.JH650633             N 0 N 0
e ponAbe2.chrUn                5704093 95646 +  72422247 I
e panTro4.chr7_GL390646_random   23700 877 +     53068 I

a score=0.000000
s hg38.chr14_KI270725v1_random  138129 123 +   172810 GCGGCAGCGGGGGGTAAAAAGCCGTGTCGGCAAAAGCCGTGGCGGCGGGGACCAAAAGCCGCGGCGGCGGGGTCAAAAAGCCGCAAAAGCCGCGGCGGCGGGGGCAAAATACCGGGGCGGCAA
e ponAbe2.chrUn                5704093 95646 + 72422247 I
e panTro4.chr7_GL390646_random   23700 877 +    53068 I

a score=5206.000000
s hg38.chr14_KI270725v1_random  138252 66 +   172810 AAAGCCCCGGCGGCGCGGGCAAAAAGCCGCGGTGGTGGGGGCAAA-AACCATCTGGAGCGGGGGCAA
s panTro4.chr7_GL390646_random   24577 67 +    53068 AAAGCCCCGGTGGCGCGGGCAAAAAGCCGCGGTGGTGGGGGCAAATAAACAGCTGGACCGGGGGCAA
i panTro4.chr7_GL390646_random I 877 C 0
e ponAbe2.chrUn                5704093 95646 + 72422247 I

a score=13432.000000
s hg38.chr14_KI270725v1_random   138318 109 +    172810 AAAAAGCCGCGAGGGCGGCGGCGGGGGGAAAAAGTCGCAAAAAACACCGGCGGCTGGGGTAAAAAGCCACGGC------GGCAAAAAGCCTCGGCGGCGGGGGCAAAAAGCCGCG
s panTro4.chr7_GL390646_random    24644 115 +     53068 AAAAAGCCGCGAGGGCGGCGGCGGGGGGAAAAAGCCGCAAAAAGCAGCGGCGGCTGGGGTAAAAAGCCTCGGCGGCGGGGGCAAAAAACCGCGGCGGCGAGGGCAAAAAGCCGCG
i panTro4.chr7_GL390646_random C 0 I 139
s panPan1.JH650633             99892842  77 + 101998900 agaaagcc------gcggcggcgcgggcagaaa----------------gcagcgggggcaaaaaac-------------acaaaaagtcgcggcggcgggag--aaaagccgc-
i panPan1.JH650633             N 0 C 0
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=1581.000000
s hg38.chr14_KI270725v1_random   138427 35 +    172810 TTGTCAAAAGAGTGGCGGCGG--GGGCCAAAAGCCGC
s panPan1.JH650633             99892919 31 + 101998900 ------aaaaagcagcggcggcggggcaaaaagccgc
i panPan1.JH650633             C 0 C 0
e ponAbe2.chrUn                 5704093 95646 +  72422247 I
e panTro4.chr7_GL390646_random    24759 139 +     53068 I

a score=8771.000000
s hg38.chr14_KI270725v1_random   138462 65 +    172810 GGCGGCGGGGACTGAAACCCATGGCGGCGGGGGCAAAATACTGCGGCGGTAAAAAGCCATGGCGG---
s panTro4.chr7_GL390646_random    24898 68 +     53068 GGCGGCGGGGATCGAAAGCCACGGCGGCGGGGGCAAAATACCGCGGCGGCAAAAAGCCGGGGCGGCGA
i panTro4.chr7_GL390646_random I 139 C 0
s panPan1.JH650633             99892950 51 + 101998900 ggcggc--------caacccggggcggcgggggcaaaaagccgc------aaaaagccgcggcag---
i panPan1.JH650633             C 0 C 0
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=5789.000000
s hg38.chr14_KI270725v1_random   138527 15 +    172810 GGACAAAAAGCCACA
s panTro4.chr7_GL390646_random    24966 15 +     53068 GGGCAAAAAGCCGCA
i panTro4.chr7_GL390646_random C 0 C 0
s panPan1.JH650633             99893001 15 + 101998900 gggtaaaaagccgca
i panPan1.JH650633             C 0 C 0
s canFam3.chr30                26787322 15 -  40214260 GAACAAAAAAACACA
i canFam3.chr30                N 0 C 0
e ponAbe2.chrUn                 5704093 95646 +  72422247 I

a score=1837.000000
s hg38.chr14_KI270725v1_random    138542 10 +    172810 AAAAGAGCCT
s panTro4.chr7_GL390646_random     24981 10 +     53068 AAAAGAGCCT
i panTro4.chr7_GL390646_random C 0 C 0
s panPan1.JH650633              99893016 10 + 101998900 aaaagagcct
i panPan1.JH650633             C 0 N 0
s calJac3.chr10                107974976 10 - 132174527 AAAAGAACAA
i calJac3.chr10                N 0 C 0
s canFam3.chr30                 26787337  2 -  40214260 ------AC--
i canFam3.chr30                C 0 C 0
e ponAbe2.chrUn                  5704093 95646 +  72422247 I

a score=-2304.000000
s hg38.chr14_KI270725v1_random    138552 3 +    172810 TTT
s panTro4.chr7_GL390646_random     24991 3 +     53068 TTT
i panTro4.chr7_GL390646_random C 0 C 0
s nomLeu3.chr6                  53523447 3 + 121039945 TTA
i nomLeu3.chr6                 N 0 C 0
s macFas5.chr7                 147854677 2 - 171882078 TT-
i macFas5.chr7                 N 0 I 1
s papAnu2.chr7                 140780242 2 - 162156779 tt-
i papAnu2.chr7                 N 0 I 1
s calJac3.chr10                107974986 1 - 132174527 --T
i calJac3.chr10                C 0 I 2
s canFam3.chr30                 26787339 3 -  40214260 TTA
i canFam3.chr30                C 0 C 0
e ponAbe2.chrUn                  5704093 95646 +  72422247 I

a score=11751.000000
s hg38.chr14_KI270725v1_random    138555 6 +    172810 TAGGGA
s panTro4.chr7_GL390646_random     24994 6 +     53068 TAGGGA
i panTro4.chr7_GL390646_random C 0 N 0
s nomLeu3.chr6                  53523450 6 + 121039945 TAGGGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864336 6 - 170124641 TAGGGA
i rheMac3.chr7                 N 0 C 0
s macFas5.chr7                 147854680 6 - 171882078 TAGGGA
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140780245 6 - 162156779 tagGGA
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36168733 6 +  58131712 TAGGGA
i chlSab2.chr26                N 0 C 0
s calJac3.chr10                107974989 6 - 132174527 TTGAGA
i calJac3.chr10                I 2 C 0
s canFam3.chr30                 26787342 3 -  40214260 TAG---
i canFam3.chr30                C 0 C 0
e ponAbe2.chrUn                  5704093 95646 +  72422247 I

a score=42504.000000
s hg38.chr14_KI270725v1_random    138561 24 +    172810 AAAGTGCAATTGCTAACAT-CTGAA-
s panTro4.chrUn_GL393505          278028 24 +   1195001 AAAGTGGAATTACTAACAT-CTAAC-
i panTro4.chrUn_GL393505       N 0 C 0
s nomLeu3.chr6                  53523456 23 + 121039945 AAAGTGGAATTACT-ATAT-CTAAC-
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864342 24 - 170124641 AATGTGGAATTACTAATGT-CTAAC-
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147854686 24 - 171882078 AATGTGGAATTACTAATGT-CTAAC-
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780251 24 - 162156779 AATGTGGAATTACTAATGT-CTAAC-
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36168739 24 +  58131712 AATGTGGAATTACTAATGT-CTAAC-
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107974995 24 - 132174527 AAAAGGAAAATATTAATAT-CTAAC-
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26787345 25 -  40214260 -AAGTAGAAATACCAGTATACTTACC
i canFam3.chr30                C 0 C 0
e ponAbe2.chrUn                  5704093 95646 +  72422247 I

a score=407481.000000
s hg38.chr14_KI270725v1_random    138585 159 +    172810 TAATATATTAAGGATGCCAATCTAAAATTTGCTAATAGCATCATATTTACAAAA-TAATAACTATTAACATGAGAAGGAATGTAATATTTAATAATTAACATTATATTACAATTCTGAGAATTCTGATCAATGCAATAAAATATCAAGAAGAA--ATAA----TTC-----
s panTro4.chrUn_GL393505          278052 163 +   1195001 TAATATATTAAGGATGCCAATCTAAAATTTGCTAATAGCATTATATTTACAAAA-TAATAACTATTAACATGAGAAGGAATGTAAGATTTAATAATTAGCATTATATTACAATTCTGGTAATTCTGATCAATGCAATAAAATATCAAGCAGAA--ATAACTAATTT-----
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53523479 159 + 121039945 TAATATATTAAGGATGCCAATCTAAAAATTGCTAATAGCATCATATTTACAAAA-TAATAACTATTAACATGAGAAGGAATGTAAGATTTAATAATTAGCATTATGTTACAATTCTGGGAATTCTGATCAATGCTATAAAATATCAAGCAGAA--ATAACTA---------
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864366 159 - 170124641 TAATATATTAAGGATGCCAATCTAAAATTTGCTAATAACATCATATTTACAAAATTAATAACTATTAACATGAGTAGGAAAGTAAGAATTAATAATTAGCATTATGTTACTATTCTGGGAATTCTGAACAATGTAATAAAATATCAAGCAGAA--ATAACT----------
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147854710 159 - 171882078 TAATATATTAAGGATGCCAATCTAAAATTTGCTAATAACATCATATTTACAAAATTAATAACTATTAACATGAGTAGGAAAGTAAGAATTAATAATTAGCATTATGTTACTATTCTGGGAATTCTGAACAATGTAATAAAATATCAAGCAGAA--ATAACT----------
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780275 159 - 162156779 TAATATATTAAGGATGCCAATCTAAAATTTGCTAATAACAtcatatttacaaaattaataaCTATTAACATGAGAAGGAAAGTAAGAATTAATAATTAGCATTATGTTACTATTCTGGGAATTCTGaacaatgtaataaaatatcaagCAGAA--ATAACT----------
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36168763 159 +  58131712 TAATAAATCAAGGATGCCAATCTAAAATTTGCTAATAGCATCATATTTACAAAATTAATAACTATTACCATGAGAAGGAAAGTAAGAATTAATAATTAGCATTATGTTACAATTCTGGGAATTCTGAACAATGTAATAAAATATCAAGCAGAA--ATAACT----------
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975019 144 - 132174527 TAATACCTTAAAGATGCCAATCTAAAATTTGCTAATAGCATTATATTTACAAAA----------TTAACATGAGAAGGAAA-TAA----TAATAATTAACATTATGCTACAATTCTGGGAATTCTGATCAATGCAATAAAATATCAAGCAGAA--ATAACT----------
i calJac3.chr10                C 0 I 5
s mm10.chr2                     58103357 150 - 182113224 TAATACATTAATGATACCAATTTATATTTTGTAAATTACTTCATACTAATAAAATTTATTACATTTA----GGGGAGAAAAA-------TAATAATTAGCATGTTGACACATTTCTGGAAATTCTGGTAAATACAGATATGTGTCTCATAGAATCATAACT----------
i mm10.chr2                    N 0 I 1
s canFam3.chr30                 26787370 154 -  40214260 TAATATATTAAGCATGCCAA--TAAAATTTATAAA---CATCATATTTATTGAATTCATTACTATTTA-ATGAGCAAGAATCTAAG----AATAACTCACATTTTGACACATTCCTGAGGATCCTGATCAATGCAATAAAATTAAAAACAGGA--ATAAGT-----AATTT
i canFam3.chr30                C 0 C 0
e ponAbe2.chrUn                  5704093 95646 +  72422247 I

a score=254919.000000
s hg38.chr14_KI270725v1_random    138744 77 +    172810 GAAAGAGGTGATAA--CAT--TATTTACAAATAGTACAAGAATAAGGAACCTTAAAATGATCATTTTCTATAATTTGTTAT
s panTro4.chrUn_GL393505          278215 79 +   1195001 GCAAGAAGTGATAA--CATATTATTTACAAATATTACAAGTATAAGGAACCTTAAAATGATCATTTTATATAATTTATTAT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5799739 81 +  72422247 GAAAGAGGTGATAACTCATATTATTTACAAATATTACAAGTATAAAGAACTTTAAAATAATCATTTTCTATGATTTGTTAT
i ponAbe2.chrUn                I 95646 I 4030
s nomLeu3.chr6                  53523638 81 + 121039945 GAAAGAGGTCATAACTCATATTATTTACAAATATTACAAGGATAAGGAACCTTAAAATGATCATTTTCTATAATTTATTAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864525 79 - 170124641 --AAGAGGTGATAACTCATATTATTTACAAATGTTACAAGTATAAGGAACCTTAAAATGATCATTTGATATAATTTATTAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147854869 79 - 171882078 --AAGAGGTGATAACTCATATTATTTACAAATGTTACAAGTATAAGGAACCTTAAAATGATCATTTGATATAATTTATTAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780434 79 - 162156779 --AAGAGGTGATAACTCATATTATTTACAAATGTTACAAGTATAAGGAACCTTAAAATGATcatttgatataatttattat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36168922 79 +  58131712 --AAGACGTGATAACTCATATTATTTACAAATATTACAAGTATAAGGAACCTTAAAATGATCGTTTGATATAATTTATTAT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975168 81 - 132174527 GAAAGAGGTGATAATTCATATTATTTATAAATGTTACAAGTATAAGGAACCTTAAAATGATCATTTTCTGGaatttattat
i calJac3.chr10                I 5 C 0
s mm10.chr2                     58103508 79 - 182113224 TACAGAAGTGAT-ATTTTTATTATACATGTACATTAAAAAAGT-AGGAAGTGCAAAGTCACAAATTATGATTGATTGATAT
i mm10.chr2                    I 1 C 0
s canFam3.chr30                 26787524 80 -  40214260 -AAAGAAATGATAGTTTCTGTTGTTTATTAATATTACAGATATAAGGAAACTTAAAATGATCATGACTTCTGATTAGTTAT
i canFam3.chr30                C 0 C 0

a score=10871.000000
s hg38.chr14_KI270725v1_random    138821 5 +    172810 AGTAA
s panTro4.chrUn_GL393505          278294 5 +   1195001 GGTAA
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53523719 5 + 121039945 AGTAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864604 5 - 170124641 GGTAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147854948 5 - 171882078 GGTAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780513 5 - 162156779 GGTAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36169001 5 +  58131712 GGTAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975249 5 - 132174527 aataa
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26787604 5 -  40214260 AAGAA
i canFam3.chr30                C 0 I 1467
e mm10.chr2                     58103587 0 - 182113224 C
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=11162.000000
s hg38.chr14_KI270725v1_random    138826 5 +    172810 ATTGT
s panTro4.chrUn_GL393505          278299 5 +   1195001 ATTGT
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53523724 5 + 121039945 ATTGT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864609 5 - 170124641 ATTGT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147854953 5 - 171882078 ATTGT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780518 5 - 162156779 ATTGT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36169006 5 +  58131712 ATTGT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975254 5 - 132174527 attat
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58103587 2 - 182113224 ---TT
i mm10.chr2                    C 0 C 0
e canFam3.chr30                 26787609 1467 -  40214260 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=458809.000000
s hg38.chr14_KI270725v1_random    138831 159 +    172810 TAAAGTCTACCTTAGGAAAGTAACACTAAG-----AGAAAA---TGTTAACAAAAATA--TCTTTGGAGTTATTTATGTTAAC-AAAATTTGGAAAAGCCTAAATATTTAGCTAGAAGGAAACGGT-------------ACATTGA--TATAGACTGGCATTAAACTTAGTTTCTT-----GATTTGATT
s panTro4.chrUn_GL393505          278304 159 +   1195001 TAAAGTCTAGCTTAGGAAAATAACACTAAG-----AGAAAA---TGTTAACAAAAATA--TCTTTGGAGTTTTTTATGTTAAC-AAAATTTGGAAAAGCCTAAATATTTAGCTAGAAGGAAATGGT-------------ACATTGA--TATAGACTGGCATTAAATTTAGTTTCTT-----GATTTGATT
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53523729 159 + 121039945 TAAAGTCTACCTTAGGAAAATAACACTAAG-----AAAAAA---TGTTAACAAAAATA--TTTTTGGAGTTATTTATGTTAAC-AAAATTTGGAAAAGCCTAAATATTTAGCTAGAAGGAAACAGT-------------ACATTGA--TATAGACTGGCATTAAACTTAGTTTCTT-----GATTTGATT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864614 159 - 170124641 TAAAGTCTACCTTAGGAAAATAGCACTAAG-----AAAAAA---TGTTAACAAAAATA--TTTTTGGAGTTGTTTATGTTAAC-AAAATTTGGAAAAGCCTAAATATTTAGCTAGAAGGAAACAGT-------------ACCTTGA--TATAGACTGGCATTAAACTTAGTTTTTA-----AATTTGATT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147854958 159 - 171882078 TAAAGTCTACCTTAGGAAAATAGCACTAAG-----AAAAAA---TGTTAACAAAAATA--TTTTTGGAGTTGTTTATGTTAAC-AAAATTTGGAAAAGCCTAAATATTTAGCTAGAAGGAAACGGT-------------ACCTTGA--TATAGACTGGCATTAAACTTAGTTTTTA-----AATTTGATT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780523 159 - 162156779 TAAAGTCTACCTTAGGAAAATAGCActaag-----aaaaaa---tgttaacaaaaata--tttttggagttGTTTATGTTAAC-AAAATTTGGAAAAGCCTAAATATTTAGCTAGAAGGAAACGGT-------------ACCTTGA--TATAGACTGGCATTaaacttagttttta-----aatttgatt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36169011 159 +  58131712 TAAAGTCTACCTTAGGAAAATAACACTAAG-----AAAAAA---TGTTAACAAAAATA--TTTTTGGAGTTATTTATGTTAAC-AAAATTTGGAAAAGCCTAAATATTTAGCTAGAAGGAAACAGT-------------ACCTTGA--TATAGACTGGCATTAAACTTAGTTTTTA-----AATTTGATT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975259 161 - 132174527 taaaGTCTACCTTAGGAAAA-AATACTAAG-----aaaaaatattattaacaaaaata--tttttGGAGTTATTTATGTTAAC-AAAATTTGGAAAAGCCTAAATATTTAGCTAGAAGGAAATGGT-------------ACATTGA--TATAAACTGGCATTAAACTTAGTTTCTT-----AATTTGATT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58103589 168 - 182113224 TAAAATGCATCTT---AAAATAATACCTAGGCCATGAAAAT---TATCAGCAGAAATG-CTTTTTGGAATTATTTATATTAACAAAAATTTGGAAATTCCTAAATGACTAGCTACCTGGTAACAGTGTGTGATTA--GAGCATTGATCTATAGACTGATGTT-GACTGAGGCTCCT-----GA-------
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26789076 179 -  40214260 tgAAATCTACCT---GAAGATAATGCTaag-----aaaaaa-gttatgaacaaaaatgtttttttgaagttatttatgttaacaaaaattttgaaagacttaagtatttaactctagggaaataatttgtgaatatggtacattta--tttggaatGGCATTAAATTTAAtttgtttaaaagattttatt
i canFam3.chr30                I 1467 I 161
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=102211.000000
s hg38.chr14_KI270725v1_random    138990 34 +    172810 AAACTTAGTTTCTATGAGACATTTGTATCATTCA
s panTro4.chrUn_GL393505          278463 34 +   1195001 AAACTTAGTTTCTATGAGACATTTGTATCATTCA
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53523888 34 + 121039945 AAACTTAGTTTCTGTGAGACATTTGTATCATTCA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864773 34 - 170124641 AAACTTAGTTTCTATGAGACATTTGTGTCATTCA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147855117 34 - 171882078 AAACTTAGTTTCTATGAGACATTTGTGTCATTCA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780682 34 - 162156779 aaatttaGTTTCTATGAGACATTTGTGTCATTCA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36169170 34 +  58131712 AAACTTAGTTTCTATGAGACATTTGTGTCATTCA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975420 34 - 132174527 AAACTTTCTTTCTATGAGACATTTGTATCACTCA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58103757 16 - 182113224 ------------------AGGTTTGCTCCACTCA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26789416 34 -  40214260 AAACTTAATTTTTATGAGATATTTGTATCACTCA
i canFam3.chr30                I 161 C 0
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=7702.000000
s hg38.chr14_KI270725v1_random    139024 2 +    172810 AA
s panTro4.chrUn_GL393505          278497 2 +   1195001 AA
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9108744 2 -  12672142 AA
i panPan1.JH650621             N 0 I 44
s nomLeu3.chr6                  53523922 2 + 121039945 AA
i nomLeu3.chr6                 C 0 I 1
s rheMac3.chr7                 145864807 2 - 170124641 AA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147855151 2 - 171882078 AA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780716 2 - 162156779 AA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36169204 2 +  58131712 AA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975454 2 - 132174527 AA
i calJac3.chr10                C 0 I 1
s mm10.chr2                     58103773 1 - 182113224 -A
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26789450 2 -  40214260 GA
i canFam3.chr30                C 0 C 0
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=99089.000000
s hg38.chr14_KI270725v1_random    139026 43 +    172810 -GTTGTATGTATAGACACTGACTGAAACACAAAGTGGGTCATAA
s panTro4.chrUn_GL393505          278499 43 +   1195001 -GTTGTATGGCTAGACACTGACTGAAACACAAAGTGGGTTATAA
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53523925 43 + 121039945 -TCTGTATGTATAGACACTAACTGAAACACAAAGTGGATTATAA
i nomLeu3.chr6                 I 1 C 0
s rheMac3.chr7                 145864809 43 - 170124641 -GTTGTATGTATAGACACTGACTGAAACACAAAGTGGGTTACAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147855153 43 - 171882078 -GTTGTATGTATAGACACTGACTGAAACACAAAGTGGGTTACAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780718 43 - 162156779 -GTTGTATGTATAGACACTGACTGAAACACAAAGTGGGTTACAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36169206 43 +  58131712 -GTTGTATGTATAGACACTGACTGAAACACAAAGTGGGTTACAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975457 43 - 132174527 -CCTGTATGTATAGACACTTACTGAAACACAATGTGGGTTGTAA
i calJac3.chr10                I 1 C 0
s mm10.chr2                     58103774 27 - 182113224 ---TGTCTGCCT-GCCAGTTACT----CACTAGGT---------
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26789452 42 -  40214260 GTCTGTGTGCATAGACATTG-CCAAAACACAAAGAGAATTGTA-
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9108746 44 -  12672142 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=62861.000000
s hg38.chr14_KI270725v1_random    139069 18 +    172810 TATTGAATATGTGATGTA
s panTro4.chrUn_GL393505          278542 18 +   1195001 TATTGAATATGTGATATA
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9108790 18 -  12672142 TACTGAATATGTGATATA
i panPan1.JH650621             I 44 I 796
s nomLeu3.chr6                  53523968 18 + 121039945 TATTGAATATGTGATATA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864852 18 - 170124641 TATTGAATATGTGATATA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147855196 18 - 171882078 TATTGAATATGTGATATA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140780761 18 - 162156779 TATTGAATATGTGATATA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36169249 18 +  58131712 TATTGAATATGTGATATA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975500 17 - 132174527 TA-TGAACATGTGATATA
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26789494 18 -  40214260 TATTGAATATATGACATT
i canFam3.chr30                C 0 C 0
e mm10.chr2                     58103801  0 - 182113224 C
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=1575358.000000
s hg38.chr14_KI270725v1_random    139087 517 +    172810 ATGGCAACCATGAAGAAAATATCAGAGAACCAAATGGAAGGAAAAGAACAGAACCTGA-ATAATGATTACCTTTGGACAGTGGGATCTTAGTTCCTTTTACTCTTCCTACTAATTTAAAATTTGCAAATTTATTACCTTCAGAATTTGAGAATACGTTATATTTATAATTAGAAAACATAAAATGAGTGCTAAATAAACAAATATACCAAATTCTGTTTAGAATTCACTTCC-------------C-CAAGAAACTTTCTTTGATTAATCCCACTGGCATTGATCATTATTTTATATGGCAC-CCCCATACTTATGTATTCAGTTTCTACCAAATTAATTTTCATGTTTTAAAAAATCAATTTATAAGCATAATTATGGCATTTCTACATTTATATAGTGTAGTCTCCAAACTGAATTATAAGCTTGAGGATATGAGGAACCAC-AGTGTATTTCCAATTATATTTATACAATAAATCATGTGGTACTTTTCACAGAGTGAATGTTGTTAACTTACTGAAGACCTGACGAAACA
s panTro4.chrUn_GL393505          278560 516 +   1195001 ATGGCAATGATGAAGAAAATATCAGAGAACAAAATAGAAGGAAAAGAGCAGAACCTGA-ATAAAGATTACCTTTGGACAGTGGCATCTTAGTTCCTTTTACTCTTCCTACTAATTTAAAATTTGCAAATTTATTACCTTGAGAATATGAGGATACattatatttatgattaaaaaatataaaatGAGTGCTAAATAAACAAATATACCAAATTCTGTTTAGAATTCACTTCC-------------C-CAAGAAACTTTCCTTGATTAATCC-ACTGGCATTGATCATTATTTCATATGGCAC-CCCCATACTTATGTATTCAGTTTCTACCATATTAATTTGCATGTTTTAAAAAGTCAATTTATAAGCAAAATTATGGCATTTCTACATTTATATAGTGTAGTCTCCAAACTGAATTATAAGCTTGAGGATATGAGGAACCAC-AGTGTATTTCCAACTATATTTATGCAATAAGTCATGTGGTACTTTTCACAGAGTGAATGTTGTTAACTTACTGAACACCTGATGAAACA
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53523986 515 + 121039945 ATGGTAACCATGAAGAAAATATCAGAGAACCAAATGGAAGGAAAAGAGCAGAACCTGA-ATAATGATTACCTTTGGACAGTGGGATCTTAGTTCCTTTTACTCTTCCTACTAATTTAAAATTTGCAAATTTATTACCTTGAGAATATGAGAATACATTATATTTATAATTAGAAAATATAAAATGAGTGCTAAATAAACAAATATATCAAATTCTGCTTAGAATTCACTTCC-------------C-CAAGAAACTTGCCTTGATTAATCCCACTGGCATTGATCATTACTTTATATGGCAC-CCCCATACTTATGTATTCAGTTTCTACCATATTAATTTGCATGTTTTAAAAAGTCAATTTATAAGCATAATTATGGCATTTCTACATTTATATAGTGTAGTCTCCAAACTGAATTATAAGCTTCAGGATATGAGGAACCAA-AGTGTATTTCCAGCTATATTTATACAATAAA--ATGTGGTAATTTTCACAGAGTGAATGTTGTTAACTTACTGAACACTTGATGAAACA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145864870 515 - 170124641 ACGCCAACCGTGAAGAAAATATCAGAGAACCAGATGGAAGGAAAAGAGCAGGACCTGA-ATAATGATTACCTTTGGACAGTGGGATCTTAATTCCTCTTACTCTTCCTACTAATTTAAAATTTGCAAATTTATTACCTTGAGAATATGAGAATACATTATATTTATAATTAGAAAACATAAAATGAGTGCTAAAGAAACAAATATATCAAATTCTGTTTAGAATTCACTTCC-------------C-CAAGAAACTTTCCTTGATTAAACCTGCTGGCATTGATCATTACTTTATATGGCAC-CCCCATACTTATGTATTCAGTTTCTACCATAGTAATTTCCATGTTTTAAAAAGTCAATTTATAAGCATAATTATGGCATTTCTACATTTATATAATGTAGTCTCCAAACTGAATTATAAGCTTGCGGATATGAGGAACCAC-AGTGTATTTCCAACTCTATTTATACAATAAATCATGTGGTACTTTT--CAGAGTGAATGTTGTTAACTTACTGAACACCTGATGAAACA
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147855214 515 - 171882078 ACGCCAACCGTGAAGAAAATATCAGAGAACCAGATGGAAGGAAAAGAGCAGGACCTGA-ATAATGATTACCTTTGGACAGTGGGATCTTAGTTCCTCTTACTCTTCCTACTAATTTAAAATTTGCAAATTTATTACCTTGAGAATATGAGAATACATTATATTTATAATTAGAAAACATAAAATGAGTGCTAAAGAAACAAATATATCAAATTCTGTTTAGAATTCACTTCC-------------C-CAAGAAACTTTCCTTGATTAAACCTACTGGCATTGATCATTACTTTATATGGCAC-CCCCATACTTATGTATTCAGTTTCTACCATATTAATTTGCATGTTTTAAAAAGTCAATTTATAAGCATAATTATGGCATTTCTACATTTATATAATGTAGTCTCCAAACTGAATTATAAGCTTGCGGATATGAGGAACCAC-AGTGTATTTCCAACTCTATTTATACAATAAATCATGTGGTACTTTT--CAGAGTGAATGTTGTTAACTTACTGAACACCTGATGAAACA
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140780779 515 - 162156779 ACGCCAACCGTGAAGAAAATATCAGAGAACCAGATGGAAGGAAAAGAGCAGGACCTGA-ATAATGATTACCTTTGGACAGTGGGATCTTAGTTCCTCTTACTCTTCCTACTAATTTAAAATTTGCAAATTTATTACCTTGAGAATATGagaatacattatatttataattagaaaacataaaatgagtgctaaagaaacaaatatatcaaATTCTGTTTAGAATTCACTTCC-------------C-CAAGAAACTTTCCTTGATTAAACCTACTGGCATTGATCATTACTTTATATGGCAC-CCCCATACTTATGTATTCAGTTTCTACCATAttaatttgcatgttttaaaaagtcaatttataAGCATAATTATGGCATTTCTACATTTATATAGTGTAGTCTCCAAACTGAATTATAAGCTTGAGGATATGAGGAACCAC-AGTGTATTTCCAACTCTATTTATACAATAAATCATGTGGTACTTTT--CAGAGTGAATGTTGTTAACTTACTGAACACCTGATGAAACA
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36169267 514 +  58131712 ACCCCAACCGTGAAGAAAATATCAGAGAACCAAATGGAAGGAAAAGAGCAGGACCTGA-ATAATGATTACCTTTGGACAGTGGAATGTTAGTTCCTCTTACTCTTCCTACTAATTTAAAATTTGCAAATGTATTACCTTGAGAATATGAGAATACATTATATTTATAATTAG-AAACATAAAATGAGTGCTAAATAAACAAATATATCAAATTCTGTTTAGAATTCACTTCC-------------C-CAAGAAACTTTCCTTGATTAATCCTACTGGCATTGATCATTACTTTATACGGCAC-CCCCATACTTATGTATTCAGTTTCTACCATATTAATTTGCATGTTTTAAAAAGTCAATTTATAAGCCTAATTATGTCATTGCTACATTTATATAGTGTAGTCTCCAAACTGAATTATAAGCTTGAGGATATGAGGAACCAC-AGTGTATTTCCAACTCTATTTATACAATAAATCATGTGGTACTTTT--CAGAGTGAATGTTGTTAACTTAGTGAACACCTGATGAAACA
i chlSab2.chr26                C 0 I 1
s calJac3.chr10                107975517 517 - 132174527 ATGGTAACCATGAAGAAAATATCAGAGAACCAAATGGAAGGAAAACAGCAAACCCTGA-ATAATGATTACCTTTGGACTGTGGGATCTTAGTTCCTTTTACTCTTCCTACTAATTTGAAATTTGCAAATTTATTACCTTGAGAATTTGAGACTACATTATATATATAATTAGAAAACATAAAATGAGTGCTAAATAAACAAATATATCAAATTCTGTTTAGAATTCACCTCC-------------C-CAGGAAACTTTCCTTGACTAAGCCCACTCGCATTGATCATTACTTTATATGGCAC-CCCCATACTTATGTATTCAGTTTTCACCATATTAATTTGCATATTTTAAAAAGTCAATTTATGAGTATAATCATGGCATTTCTACATTTATATAGCGTAGTCTTCAAACTGAATTATAAGCTTGAGAATATGAGCAACCAC-AGTGTATTTCCAACTATATTTGTGCAATAAATCATGTGGTACTTTTCACAGAGTGAATGTTGGTAACAAATTGAGCACCTGATGAAACA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58103801 458 - 182113224 ---------------------------------------------------------------------TCTTTGGTCAGTGAGGTTGTAGTTCATTTTTCTTTTATTACTAATTTGGAATTTGCACATTTATTGACATAAGATTATAAGAATACATTATATTTATAATTAGTAGGCATAAAGTTAGTGCTACATAAACAAATATATCAAATTCTGTTTAAAATTCAGTCCCCCCACCACCACCAC-CAGAAACTTTTCCCTGATTAATCCCAGGGGCATTGATCATCACTGTACA--GCACGCCCCACACTTATGCATGCAGTTTGCACCGTGCTCATTTGCATG-TTTAAAAAAACAATTTATGAACATAATTACAGTGTTTCTACAGTCATATAGGATGGTCTCCAAACTGAATTATAAGCAGAAGGTTACAAGAAAACACAAATACATTTCCAA-TGCATTTCTAGAATAATTCATGTGGCACTTCTCACGCAGTGGC--TTGTTACCTCACGATGAATCTGACAACACC
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26789512 500 -  40214260 AAAGTAGTTGTATAGAGAATACCAGAGGAGAAAATGAAATGAAAACAACAGAGGTTGGTATAGTGATTGTCTTTGG-CAGTGGATTCTTAGCTTCTTTTGTTCTTCTTACTAATTTGAAA-TTACAAATTTATT--------AATGTGAGATTACATTATTTTTATGATTAG--GATATGAAACAAGTACTAAGT-AACAAATATGCCAAATGcagtttagaattcaattcc-------------ctcaggaaaccttctctgattaatctcactggtgccgatcatttctttgtaccatgc-ccccatacttgtgtattctgttggtaccatattaatttgcatgtttcaaaaaatcaatttatgagcataattatg-tatttccacatgtatatGGTGTAGTCCCCACATTGAAGTATAAACTTGAGAATATGAGGAACCTCAAGTGTATGTCTTGCTGTATTTCTGGAATAATTCATGT---ACTTTTCACAGATTGAA---TGTTAACTTACTGAACACCTGATGAACCA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9108808 796 -  12672142 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=-130.000000
s hg38.chr14_KI270725v1_random    139604 1 +    172810 G
s panTro4.chrUn_GL393505          279076 1 +   1195001 T
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53524501 1 + 121039945 T
i nomLeu3.chr6                 C 0 C 0
s nasLar1.chr7                 130387669 1 - 153844193 G
i nasLar1.chr7                 N 0 I 305
s calJac3.chr10                107976034 1 - 132174527 T
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58104259 1 - 182113224 T
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26790012 1 -  40214260 T
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9108808 796 -  12672142 I
e rheMac3.chr7                 145865385 1 - 170124641 I
e chlSab2.chr26                 36169781 1 +  58131712 I
e papAnu2.chr7                 140781294 1 - 162156779 I
e macFas5.chr7                 147855729 1 - 171882078 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=724519.000000
s hg38.chr14_KI270725v1_random    139605 273 +    172810 GGGAAAGATGGCAATGTCTGACAAGAGGAACAGACGTGAAATAAAATCCAACATTCTGTGTAATTCTTATTGTCTCTTAACCCTACTTGTTGAATTACGAAAACTTCATATACAAAAAT-TTGAGCATTAT---ACTC-TTTAGCTGTACATTATCATTTCAAAACAAACTTATACATGGCTCTCACTATTACAATAGTCTTCCCACTGTAAAAACTTTTAAGCTGTAACTTTCTGCCATTACTACGTTACCTTCGTATTAGTTTATGCCATACTTCT
s panTro4.chrUn_GL393505          279077 273 +   1195001 GGGAAAGATGGCCATATCTGACAAGAGGAACAGATGTGAAATAAAATCCAACATTCTGTATAATTCTTATTGTCTCTTAACCCTACTTGTTGAATTACAAAAACTACGTATACAAAAAT-TTGAGCATTAT---ACTC-TTTAGCTGTACATTATCATTTCAAAACAAACTTATACGTGGCTCTCACTATTACAATAATCTTCCCCCTGTAAAAACTTTTAAGCTGTAACTTTCTGCCATTACTATATTACCTTCATATTAGTTTATGCAGTACTTCT
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53524502 274 + 121039945 GGGAAAGATGGCAATGTCTGACAAGAGGAACAGACATGAAATAAAATCCAACATTCTGTATAATTCTTATTGTCTCTTAACCCTACTTGTTGAATTACAAAAACTACATATACAAAAAT-TTGAGCATTAT---ACTCTTTTAGCTGTACATTATCATTTCAAAACAAACTTACACATGGCTCCCATTATTACAATAATCTTCCCATTGTAAAAACTTTTAAGCTCTAACTTTCTGCCATTACTGCATTACGTTTATATTAGTTTATGCCATATTTCT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145865386 274 - 170124641 GGGAAAGATGGCAATGTCTGACACGAGGAACAGACATGAAATAAAATCCAACATTGTGTATAATTCTTATTGCCTCTTAACCCTACTTGTTGAATTACAAAAACTATACATACAAAAAT-TTGAGCATTAT---ACTCGTTTAGCTGTACATTATCATTTCAAAACAAACTTATACATGGCTCCCATTATTACAATAATGCTCCCATTGTAAAAACTTTTAAGATCTAACTTTCTGCCACTACTACTTTACCTTTGTATTAGTTTATGCCCTACTTCT
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147855730 274 - 171882078 GGGAAAGATGGCAATGTCTGACAAGAGGAACAGACATGAAATAAAATCCAACATTGTGTATAATTCTTATTGCCTCTTAACCCTACTTGTTGAATTACAAAAACTATACATACAAAAAT-TTGAGCATTAT---ACTCGTTTAGCTGTACATTATCATTTCAAAACAAACTTATACATGGCTCCCATTATTACAATAATGCTCCCATTGTAAAAACTTTTAAGATCTAACTTTCTGCCACTACTACTTTACCTTTGTATTAGTTTATGCCATACTTCT
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140781295 274 - 162156779 GGGAAAGATGGCAATGTCTGACAAGAGGAACAGACAtgaaataaaatccaacattgtGTATAATTCTTATTGCCTCTTAACCCTACTTGTTGAATTACAAAAACTATACATACAAAAAT-TTGAGCATTAT---ACTCGTTTAGCTGTATATTATCATTTCAAAACAAACTTATACATGGCTCCCATTATTACAATAATGCTCCCATTGTAAAAACTTTTAAGATCTAACTTTCTGCCACTACTACTTTACCTTTATATTAGTTTATGCCATACTTCT
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36169782 274 +  58131712 GGGAAAGATAGCAATGTCTGACAAGAGGAACAGACATGAAATAAAATCCAGCATTCTGTATAATTCTTACTGCCTCTTAACCCTACTTGTTGAATTACAAAAACTATACATACAAAAAT-TTGAGTATTAT---ACTCATTTATCTGTACATTATCATTTTAAAACAAACTTATACATGGCTCTCATTATTATAATAATGCTCCCATTGTAAAAACTTTTAAGCTCTAACTTTCTACCACTACTACTTTACCTTTATATTAGTTTATGCCATACTTCT
i chlSab2.chr26                I 1 C 0
s calJac3.chr10                107976035 267 - 132174527 TAGAAATATGGGAATCTCTGATAAGAAGAACAGACATGAAATGAAATCCAACATTCTGTAGAATTCTTGTTGCCTCTTAACCCTACTTGTTGAATTACAAAGA-TACATATACAGAAAG-TTGAGCATTAT---ACTCTTTTAGCTGAACGTTATCATTTCAAAACAAACTTATACATGGCTT------GTCCAGTAGCGCTCCCATTGTAAAAACTTTTAAGCTCTCACTTTCTGCCATTACTACATTCCCTTTATATTAATTTATGACATACTTCT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58104260 222 - 182113224 TGGA---CTGGACTTGTCTGACAGGAGGAATAGGTAGAAAATATAATCCAGCATCCC-TACAGTTATCATTGTCACTCAAACTGAATTGCTGAATTAAAATACAGTCGTGTAAAAAGAT-----GCATTATCTCATTCTTCTAGATGTTTATTTTTATTTCA----------------GACTC------ATCCAACGATGCGGCCAC-ATAATTATTGTTATATAACAATATTCTG------------TACC------------TACACTATACTCCT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26790013 263 -  40214260 TGGAAATGTGGTGACATGTAACAAGAGGAATAAACATGAAATACAGTCCAACATTCTCTACAATTTTTATTGCCACTAAACTCTAGTTGTTGAATTTTAAAAA-TATATATGCAAAAATGTTGAGTATTAT---ACTTTTATAGCTGTACATTATCATTTCAAATCAAGCT----CATAGTTC------ATCCAGCAATGCTGTCCATATAAAAA-TGTTAAGCTCTAATTTTCTATCAATAGTATATTATCATTATGTTCATATATGCCACAATTCT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9108808 796 -  12672142 I
e nasLar1.chr7                 130387670 305 - 153844193 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=17155.000000
s hg38.chr14_KI270725v1_random    139878 4 +    172810 TTCT
s panTro4.chrUn_GL393505          279350 4 +   1195001 TTCT
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9109604 4 -  12672142 TTCT
i panPan1.JH650621             I 796 I 2007
s nomLeu3.chr6                  53524776 4 + 121039945 TTCT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145865660 4 - 170124641 TTCT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856004 4 - 171882078 TTCT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140781569 4 - 162156779 TTCT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170056 4 +  58131712 TTCT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107976302 4 - 132174527 TTCT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58104482 4 - 182113224 TTCC
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26790276 4 -  40214260 ATCT
i canFam3.chr30                C 0 C 0
e nasLar1.chr7                 130387670 305 - 153844193 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=81854.000000
s hg38.chr14_KI270725v1_random    139882 27 +    172810 GAGTTTCTGTCAATATTCATCTGAGGT
s panTro4.chrUn_GL393505          279354 27 +   1195001 GAGTTTCTGCCAATATTCATCTGAAGT
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53524780 27 + 121039945 GAGTTTCTGTCAATATTCATCTGAAGT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145865664 27 - 170124641 GAGTTTCTGTCAATATTCATCTGAAGT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856008 27 - 171882078 GAGTTTCTGTCAATATTCATCTGAAGT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140781573 27 - 162156779 GAGTTTCTGTCAATATTCATCTGGAGT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170060 27 +  58131712 GAGTTTCTGTCAATATTCATCTGAAGT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107976306 27 - 132174527 GAGGTTCTGTCAATATTCATCTGAAGT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58104486 21 - 182113224 -AGTTTCTATTAGAATTCACCT-----
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26790280 27 -  40214260 GAGTTTCCATCAGAAATCAGCTACAGT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387670 305 - 153844193 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=25025.000000
s hg38.chr14_KI270725v1_random    139909 5 +    172810 ATTTT
s panTro4.chrUn_GL393505          279381 5 +   1195001 ATTTT
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53524807 5 + 121039945 ATTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145865691 5 - 170124641 ATTTT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856035 5 - 171882078 ATTTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140781600 5 - 162156779 ATTTT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170087 5 +  58131712 ATTTT
i chlSab2.chr26                C 0 C 0
s nasLar1.chr7                 130387975 5 - 153844193 ATTTT
i nasLar1.chr7                 I 305 C 0
s calJac3.chr10                107976333 5 - 132174527 ATTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58104507 5 - 182113224 ATTTT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26790307 5 -  40214260 ATTTT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=46338.000000
s hg38.chr14_KI270725v1_random    139914 11 +    172810 TGTGTAAAAAT
s panTro4.chrUn_GL393505          279386 11 +   1195001 TGTGTAAAAAT
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53524812 11 + 121039945 TGTGTAAAAAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145865696 11 - 170124641 CTTGTAAAAAT
i rheMac3.chr7                 C 0 I 26
s macFas5.chr7                 147856040 11 - 171882078 CTTGTAAAAAT
i macFas5.chr7                 C 0 I 26
s papAnu2.chr7                 140781605 11 - 162156779 CGTGtaaaaat
i papAnu2.chr7                 C 0 I 26
s chlSab2.chr26                 36170092 11 +  58131712 CGTGTAAAAAT
i chlSab2.chr26                C 0 I 26
s nasLar1.chr7                 130387980 11 - 153844193 CGTGTAAAAAT
i nasLar1.chr7                 C 0 I 32825
s rhiRox1.KN300076v1             2049618 11 +   2481265 CGTGTAAAAAT
i rhiRox1.KN300076v1           N 0 I 13975
s calJac3.chr10                107976338 11 - 132174527 TGTGTAAAAAT
i calJac3.chr10                C 0 I 4
s mm10.chr2                     58104512 11 - 182113224 CTTATACATTT
i mm10.chr2                    C 0 I 4
s canFam3.chr30                 26790312 11 -  40214260 CTTGTAAAACT
i canFam3.chr30                C 0 I 3
e panPan1.JH650621               9109608 2007 -  12672142 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=845583.000000
s hg38.chr14_KI270725v1_random    139925 292 +    172810 TAG----TAACAGGAAAATAGATAACTGCttccaatatgtagaagtcattactacagctttgcctattaacacatacacactatttcttcatgtcccagatgttcaggtatatgggaatgaaa-----caatgagttggaacctcttgattcagttattctggtgacaaacaatgtgtatagctcattgacgattgtttaacccttgataaaatgTGGCTGCAATTGTTACTTGCAGATGTAGCCACACTTAA------TTTCTTTTCTCCACTCCCCACTGCATTGTATTTGTTATTCTTGATATC--------------
s panTro4.chrUn_GL393505          279397 298 +   1195001 TAGATAGTAACAGGAAAATAGATAACTGCTTCTAATAGGTAGAAGTCATTACTACAGCTTTGCCTATTAACACATACACACTATTTCTTCATGTCCCAGATGTTCAGGTATATGGGAATGAAAAAAA-TAATGAGTTGGAGCCTCTTGATTCAGTTATTCTGGTGACAAACAACCTGTATAGCTCATTGACGATTGTTTTACCCTCGACAAA--GCAGCTGCAATTGTTACTTGCAGATGTAGCCACGCTTAA------TTTCTTTTCTCCACTCCTCACTGCATTGTATTTGTTATTCTTGATATG--------------
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53524823 298 + 121039945 TAGATAGTAACAGGAAAATAGATAACTGCTTCTAATAGGTAGAAGTCATTACTACAGCTTTGCCTATTAACACATACACACTATTTCTTCATGTCCCAGATGTTCAGGCATATGGGAATGAAAAAAATTAATGAGTTGGAACCTCTTGATTCAGTTATTCTGGTGACAAACAATCTGTATAGCTCATTGATGATTCTTTTACCCTTGATAAA--GTGGCTGCAATTGTTACTTGCAGATGTAACCACACTTAA-------TTCTTTTCTCCACTCCCCAGTGCATTGTATTTGTTATTCTTGATACG--------------
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145865733 284 - 170124641 ----TAGTAATAGGAAAATAGATAACT-----------GTAGAAGTTATTACTACAGCTTTGCCTATTAATACATACACACTAGTTCTTCATGTTCCAGATGTTCAGGCATATGGGAATGAAAAAAATTAATGAGCTGGAACCTCTTGATTCAGTTATTCTGGTGACAAACAATCTGTATAGCTCATTGATGATTGTTTTATCCTTGACAAA--GTGGCTGCAATTGTTACTCGCCGGTGCAGCCACACTTAA------TTTCTTTTCTCCACTCCCCACTGAATTGTATTTGTTATTCTTGATACG--------------
i rheMac3.chr7                 I 26 C 0
s macFas5.chr7                 147856077 284 - 171882078 ----TAGTAATAGGAAAATAGATAACT-----------GTAGAAGTTATTACTACAGCTttgcctattaatacatacacactagttcttcatgttccagatgttcaggcatatgggaatgaaaaaaattaatgagctggaacctcttgattcagttattttggtaacaaacaatctgtatagctcattgatgattgttttatccttgacaaa--gtggCTGCAATTGTTACTCGCCGGTGCAGCCACACTTAA------TTTCTTTTCTCCACTCCCCACTGAATTGTATTTGTTATTCTTGATACG--------------
i macFas5.chr7                 I 26 C 0
s papAnu2.chr7                 140781642 284 - 162156779 ----TAGTAATAGGAAAATAGATAACT-----------GTAGAAGTTATTACTACAGCTTTGCCTATTAACACATACACACTAGTTCTTCATGTTTCAGATGTTCAGGCATAtgggaatgaaaaaaattaatgagctgGAACCTCTTGATTCAGTTATTCTGGTGACAAACAATCTGTATAGCTCATTGATGATTGTTTTATCCTTGACAAA--GTGGCTGCAATTGTTACCCGCCGGTGCAGCCACACTTAA------TTTCTTTTCTCCACTCCCCACTGAATTGTATTTGTTATTCTTGATACG--------------
i papAnu2.chr7                 I 26 C 0
s chlSab2.chr26                 36170129 283 +  58131712 ----TAGTAATAGGAAAATAGATAACT-----------GTAGAAGTTATTACTACAGCTTtgcctattaacacatacacact-tttcttcatgtcccagatgttcaggcatatgggaatgaaaaaaattaatgagctggaacctcttgattcagttattctggtgacaaacaatctgtatagctcattgatgattgttttatccttgacaaa--gtggCTGCAATTGTTACTCGCCGATGCAGCCACACTTAA------TTTCTTTTCTTCACTCCCCACTGAATTGTATTTGTAATTCTTGATATG--------------
i chlSab2.chr26                I 26 C 0
s calJac3.chr10                107976353 295 - 132174527 ----TAGTAATGAGATAATAGATAACTGCTTCTAATAGGTAGAAGTCATTAGCACTGCTTTTCTTATTAACACATACTCACTATTTCTTCAAGTCCCAGATGTTCAGGCATATGGGAATGAAAAAAATTAATGAGTTGGAACCTCTTGATTTAGTTATTCTGGTGACAAACAATCTGTATAGCTCATTGATGATTGTTTTACCCTTGACAAA--GTGGCTGCAATTGTTACTTGCAGATGAAGCCACACTTAA------TTTCTTTTCTCCACTCCCCACTTCATTGTATTTGTTATTCCCGATCAG--------------
i calJac3.chr10                I 4 C 0
s mm10.chr2                     58104527 287 - 182113224 ----TGGCAAAGGGGAAACACATTACTACCTCTAGTAGGTAGAAGCCATAATCACTTGCTTGCTTGATAA-----ACACACTGTTTCTT-GTGTACCAGGTGTCCAGGCACATGGGAAC-AAAAAAGTCAATGAGTTGAAAATTCTTGATCCTGTTATTCTAGTAGAGCGCAGTCTGTAGAGCTCATTGATGATGGCTTTGCCATTGTAACA--G-------GACTGTGACTTGCTGATGTTGCTAAGCTGACCATGACCTCCTTTTCTCCATTCTCCATCCACTGGGACTTTTTGTTTTTGATCAC--------------
i mm10.chr2                    I 4 C 0
s canFam3.chr30                 26790326 288 -  40214260 ----TAGTAAAGAGAAAATGGATAACTTCATGTAGTAGGTAGAAGTCACTACTGCTGAATAGCCTATTAACACATACACACTGTTTCTTTGTGTCCCAGATGTTCAGGCATATGGGAATGAAAAAAATCAATGAATTGGAACCTTTTGATTCTGTTATTCTGCT-----------------GCTCATTGATGATTGTTTTACCCTTGACAAA--GTGGCTACAATTGTTACTTGCAGATGTAGCTACAGTTAA------TTTCTTTTCTCAATTCCCCACACCAC----TTTGTCATTCTGGATCAGAAGGAAAAAAAACA
i canFam3.chr30                I 3 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e ponAbe2.chrUn                  5799820 4030 +  72422247 I

a score=155513.000000
s hg38.chr14_KI270725v1_random    140217 41 +    172810 AGAAATGTGTTAA----GAAATATGCCACTAACTGGGTGTGCTCC
s panTro4.chrUn_GL393505          279695 41 +   1195001 AGAAATGTGTTAA----GAAACTTGCCACTAACTGCATGTGCTCC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5803850 41 +  72422247 agaaatgtgttaa----gaaacatGCCACTAACTGCATGTGCTCC
i ponAbe2.chrUn                I 4030 C 0
s nomLeu3.chr6                  53525121 41 + 121039945 AGAAATGTGTTAA----GAAACATGCCACTAACTGCATGTGCTCC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866017 41 - 170124641 AGAAATGTGTTAA----GAAACATGCCACTAACTACAAGTGCTCC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856361 41 - 171882078 AGAAATGTGTTAA----GAAACATGCCACTAACTACAAGTGCTCC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140781926 41 - 162156779 AGAAATGTGTTAA----GAAACATGCCACTAACTACAAGTGCTCC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170412 41 +  58131712 AGAAATGTGGTAA----GAAACATGCCACTAACTACAAGTGCTCC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107976648 41 - 132174527 AGAAATGAGTTAA----GAAACATGCCACTAACTGCATGTGCTCC
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58104814 41 - 182113224 AGAGATGGGTTAA----AATATATGCTCTTACATACATGTGCCCC
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26790614 45 -  40214260 AAAAACAAAAAAAACCCAAAACATACCACTAACTGCATGTGCTCT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I

a score=14940.000000
s hg38.chr14_KI270725v1_random    140258 4 +    172810 CTAT
s panTro4.chrUn_GL393505          279736 4 +   1195001 CTAT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5803891 4 +  72422247 CTAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525162 4 + 121039945 CTAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866058 4 - 170124641 CTAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856402 4 - 171882078 CTAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140781967 4 - 162156779 CTAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170453 4 +  58131712 CTAT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107976689 4 - 132174527 CTAT
i calJac3.chr10                C 0 T 1526
s canFam3.chr30                 26790659 4 -  40214260 CTCT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58104855 0 - 182113224 C

a score=27378.000000
s hg38.chr14_KI270725v1_random    140262 12 +    172810 -----ACAATTAGCTAC
s panTro4.chrUn_GL393505          279740 12 +   1195001 -----ACAATTAGCTAC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5803895 12 +  72422247 -----ACAATTAGCTAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525166 12 + 121039945 -----ACAATTAGCTAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866062 12 - 170124641 -----ACGATTAGCTAC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856406 12 - 171882078 -----ACGATTAGCTAC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140781971 12 - 162156779 -----ATGATTAGCTAC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170457 12 +  58131712 -----ACGATTAGCTAC
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26790663 15 -  40214260 ACTTGTTGATTAGCT--
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58104855  0 - 182113224 C
e calJac3.chr10                107976693 1526 - 132174527 T

a score=48738.000000
s hg38.chr14_KI270725v1_random    140274 16 +    172810 AGAAAGAGGTGATAAC
s panTro4.chrUn_GL393505          279752 16 +   1195001 CGAAAGAGGTGATGAC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5803907 16 +  72422247 AGAAAGAGGTGATAAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525178 16 + 121039945 AGAAAGAGGTGATAAC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866074 16 - 170124641 AGAAAGAGGTGATAAC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856418 16 - 171882078 AGAAAGAGGTGATAAC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140781983 16 - 162156779 AGAAAGAGGTGATAAC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170469 16 +  58131712 AGAAAGAGGTGATAAC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975167 16 - 132174527 AGAAAGAGGTGATAAT
i calJac3.chr10                T 1526 C 0
s canFam3.chr30                 26790678 12 -  40214260 ---AAGGGATATTAT-
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58104855  0 - 182113224 C

a score=1643.000000
s hg38.chr14_KI270725v1_random        140290 1 +    172810 T
s panTro4.chrUn_GL393505              279768 1 +   1195001 T
i panTro4.chrUn_GL393505           C 0 C 0
s ponAbe2.chrUn                      5803923 1 +  72422247 T
i ponAbe2.chrUn                    C 0 C 0
s nomLeu3.chr6                      53525194 1 + 121039945 T
i nomLeu3.chr6                     C 0 C 0
s rheMac3.chr7                     145866090 1 - 170124641 C
i rheMac3.chr7                     C 0 C 0
s macFas5.chr7                     147856434 1 - 171882078 C
i macFas5.chr7                     C 0 C 0
s papAnu2.chr7                     140781999 1 - 162156779 C
i papAnu2.chr7                     C 0 C 0
s chlSab2.chr26                     36170485 1 +  58131712 C
i chlSab2.chr26                    C 0 C 0
s calJac3.chr10                    107975183 1 - 132174527 T
i calJac3.chr10                    C 0 C 0
s tupBel1.scaffold_136027.1-125984     57223 1 -    125984 T
i tupBel1.scaffold_136027.1-125984 N 0 N 0
s canFam3.chr30                     26790690 1 -  40214260 T
i canFam3.chr30                    C 0 C 0
e panPan1.JH650621                   9109608 2007 -  12672142 I
e nasLar1.chr7                     130387991 32825 - 153844193 I
e rhiRox1.KN300076v1                 2049629 13975 +   2481265 I
e mm10.chr2                         58104855 0 - 182113224 C

a score=145245.000000
s hg38.chr14_KI270725v1_random    140291 50 +    172810 ----CATATTATTTACAAAGATTACAAGTATAAAGAACATTAAA-ATAATCATTT
s panTro4.chrUn_GL393505          279769 50 +   1195001 ----CATATTATTTACAAATATTAGAAGTAAAAAGAACCTTAAA-ATAATCATTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5803924 50 +  72422247 ----CATATTATTTACAAATATTACAAGTATAAAGAACTTTAAA-ATAATCATTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525195 50 + 121039945 ----CATATTATTTACAAATATTACAAGTATAAGGAACCTAAAA-ATGATCATTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866091 50 - 170124641 ----CATATTATTTACAAATATTACAAGTATAAGGAATCTTAAA-ATGATCATTT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856435 50 - 171882078 ----CATATTATTTACAAATATTACAAGTATAAGGAATCTTAAA-ATGATCATTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140782000 50 - 162156779 ----catattatttacaaatattacaaGCATAAGGAATCTTAAA-ATGatcattt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170486 50 +  58131712 ----CATATTATTTACAAATATTACAAGTATAAGGAATCTTAAA-ATGACCATTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975184 50 - 132174527 ----CATATTATTTATAAATGTTACAAGTATAAGGAACCTTAAA-ATGATCATTT
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26790691 55 -  40214260 AGTGCTTCTTATTGAAACCAGATGAGAAAAAATGATACATTAAATCCAGTCATTT
i canFam3.chr30                C 0 I 236
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58104855  0 - 182113224 C

a score=66711.000000
s hg38.chr14_KI270725v1_random    140341 35 +    172810 TCTATAATTTGTT---ATCAATTGTTAAG-TTTATTTTA
s panTro4.chrUn_GL393505          279819 35 +   1195001 TCTATAATTTGTT---ATCAATTGTTAAG-TTTATTTTA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5803974 34 +  72422247 TCTACGATTTGTT---ATCAATTG-TAAG-TTTATTTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525245 38 + 121039945 TCTATAATTTATTATAATAAATTTTTAAA-TTTATCTTA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866141 33 - 170124641 TCtataattta-----ataaattgttata-tttatttta
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856485 33 - 171882078 TCTATAATTTA-----ATAAATTGTTATA-TTTATTTTA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140782050 33 - 162156779 tctataattta-----ataaattgttata-tttatttta
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170536 33 +  58131712 TCTATAATTTA-----ATGAATTGTTATA-TTTATTTTA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107975234 39 - 132174527 TCTGGaatttattataataaattattaaaGTCTACCTTA
i calJac3.chr10                C 0 I 1422
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58104855  0 - 182113224 C
e canFam3.chr30                 26790746 236 -  40214260 I

a score=11716.000000
s hg38.chr14_KI270725v1_random    140376 4 +    172810 ACAA
s panTro4.chrUn_GL393505          279854 4 +   1195001 ACAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5804008 4 +  72422247 ACAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525283 4 + 121039945 ACAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866174 4 - 170124641 aCAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856518 4 - 171882078 ACAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140782083 4 - 162156779 acaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170569 4 +  58131712 ACAA
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58104855 4 - 182113224 ACAT
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e canFam3.chr30                 26790746 236 -  40214260 I
e calJac3.chr10                107975273 1422 - 132174527 I

a score=346397.000000
s hg38.chr14_KI270725v1_random    140380 113 +    172810 TTATCAATTAGCTACAGAACACGAGTAGTGTTTCTTACTTTAGCCTGATGTAAACATGTGAT------GCGGTAAT--ATAGTGAAGAATATTACTCACTTCAGAGGATAGGGCTTTGGTC
s panTro4.chrUn_GL393505          279858 113 +   1195001 TTATCAATTAGCTATGGAACACGAGCAGTGTTTCTTACTTTAGCCAGCTGTAAACATGTGAT------GCGGTAAT--ATAGTGAAGACTATTACTCACTTCAGGGGATAGGGCTTTGGTC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5804012 113 +  72422247 TTATCAATTAGCTACAGAACACGAGTAATGTTTCTTACTTTAGCCAGATGTAAACATGTGAT------GCAGTAAT--ATAGTGAAGAATATTACTCACTTCAGGGGATAGGGCTTTGGTG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525287 113 + 121039945 TTATCGATTAGCTACAGAATATGATTAGTGTTTCCTACTTTAGCCAGATGTAAACATGTAAT------GCAGTAAT--TTAGTGAAGAATATTACTCACTTCAGGGGATAGGGCTTTGGTC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866178 113 - 170124641 TTATCAATTAGCTACAGAACATGATTAGTGTTTACTATTTTAGCCAGATGTAAAAATGTGAC------GCAGTAAT--TCAGTGAAGACTATTACTCACTTCAGGGGATAGGGCTTTGGTC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856522 113 - 171882078 TTATCAATTAGCTACAGAACATGATTAGTGTTTACTATTTTAGCCAGATGTAAAAATGTGAC------GCAGTAAT--TCAGTGAAGACTATTACTCACTTCAGGGGATAGGGCTTTGGTC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140782087 113 - 162156779 ttatcAATTAGCTACAGAACACGATTAGTGTTTACTATTTTAGCCAGATATAAAAATGTGAC------GCCGTAAT--TCAGTGAAGACTATTACTCACTTCAGGGGATAGGGCTTTGGTC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170573 113 +  58131712 TTATCAATTAGCTACAGAACACGATTAGCGTTTACTATTTTAGCCAGATGTAAAAATGTGAC------GCAGTAAT--TCAGTGAAGACTATTACTCATTTCAGGGGATAGGGCTTTGGTC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107976695 110 - 132174527 TTAACGACCAGCTAAAGAACACTATTAGTGTTTCCTACTTTAGCCAGATGAAAAAATGTGAT------CCAGTAAT--TTAGTGAA---TGTTACTCACTTCAGGGGATAGGGCTTTGGTC
i calJac3.chr10                I 1422 C 0
s mm10.chr2                     58104859 121 - 182113224 GTATTTATTAGCTAAGCAACACTGCAAGTCTTTCTTGTCAAAGTCAGAAGATGAAGTGTGACATCTTAACTGTAATGATTAATGGATGCTATTACTCACTGCAGGGAATAGGGGTTTGGTC
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e canFam3.chr30                 26790746 236 -  40214260 I

a score=274289.000000
s hg38.chr14_KI270725v1_random    140493  97 +    172810 AAAAATTTTGAGAAACTCTTGAAAAAGGAAAAGAA------AACCCCC--CGTGATAGTAATACAATTCCAAAAGCAAAAGGAGA---AAAAATGTAAAT----------------------------------------------------------------GTATTAAA
s panTro4.chrUn_GL393505          279971  96 +   1195001 AAGAATTTTGAGAAACTCTTGAAAAAGGAAAAGAA------AACCCCC---ATGATAGTAATACAATCCCAAAAGCAAAAGGAGA---AAAAATGTAAAT----------------------------------------------------------------GTATTAAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5804125  97 +  72422247 AAGAATTTTGAGAAACTCTTGAAAGAGGAAAAGTA------AACCTCC--CATGATAGTAATACAATTCCAAAAGCAAAAGGAGA---AAAAATGTAAAT----------------------------------------------------------------GTATTAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525400  96 + 121039945 AAGAATTTTGAGAAACTCTTGAAGAAGGAAAAGAA------ACCCCCC---ATGAGAGTAATACAATTCCAAAAGCAAATGGAGA---AAAAATGTAAAT----------------------------------------------------------------ATATTAAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866291 105 - 170124641 AAGAATTGTGAGAAACTCTTGAAAAAGGAAAAGAACTCCACACCCCCCACCATGACAGTAATACAATTCCAAAAGCAAAAGGAGA---AAAAATGTAAAT----------------------------------------------------------------Gtattaaa
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856635 105 - 171882078 AAGAATTGTGAGAAACTCTTGAAAAAGGAAAAGAACTCCACACCCCCCACCATGACAGTAATACAATTCCAAAAGCAAAAGGAGA---AAAAATGTAAAT----------------------------------------------------------------GTATTAAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140782200 105 - 162156779 AAGAATTGTGAGAAActcttgaaaaaggaaaagaactccACACCCCCCACCATGACAGTAATACAATTCcaaaagcaaaaggaga---aaaaatgtaaat----------------------------------------------------------------gtattaaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170686 105 +  58131712 AAGAATTGTGAGAAACTCTTGAAAAAGGAAAAGAACTCCACACCCCCCACCATGACAGTAATACAATTCCAAAAGCAAAAGGAGA---AAAAATGTAAAT----------------------------------------------------------------GTATTAAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107976805  96 - 132174527 AAGAATTGTGAGAAGCTCTTGAAAAAGGAAAAGAA------AATCCTT--CATAACAAAAATACAATTCCAAAAGCAAAAGGAG----AAAAATGTAAAT----------------------------------------------------------------GTGTTAAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58104980  54 - 182113224 AAGAACTGTGAGGAACTCTTTAAAAG--------------------------------------------AAAAACAGAATTGAA---GAAAATTTAA-----------------------------------------------------------------------AAA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26790982 169 -  40214260 aaATATTTTGAACAACTCTTGAGAAAGGATAAGATAATATAGATCCTA---ATGATAGTTAAATTTTTCCAAAAGCAAATGAAAATGTAGACATATAAATTCAAATAGTATttttttttaattttaaggatttatttatttgggtggtgggagagggcaagagagtcttaaa
i canFam3.chr30                I 236 I 117
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I

a score=445802.000000
s hg38.chr14_KI270725v1_random    140590 138 +    172810 TCAAAAAATATTTTAAGGTAAGGCAAAAGTAGGTACAGAATGGTGAGTCACATACAAATTG---TGAAAGTGAGTAATGGCCCAGAAATCAAAGGAGAGGGAAAAATATGGTAGGTGAATA-TGGTTGCAATGCTAATTAAA
s panTro4.chrUn_GL393505          280067 138 +   1195001 TCAAAAAATATTTTAAGGTAAGGCAAAAGTAGGTATAGAACTGTGAGTCACATACAAATTG---TGAAAGTGAGTAATGGCCCAGAAATCAAAGGAGAGGGAAAAATATGGTCGGTGAATA-TGGTTGCAATGCTAATTAAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5804222 137 +  72422247 TCAAAAAATATTTAAAGGTAAGGCAAAAGTAGGTATAGAATGGTGAGTCACATACAAATTG---TGAAAGTGAGTAAT-GCCCAGAAATCAAAGGAGAGGGAAAAATATGGTAGGTGAATA-TGGTTGCAATGCTAATTTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525496 138 + 121039945 TCAAAAAATATTTTAAGGTAAGGCAAAAGTAGGTATAGAACGGTGAGTCACATACAAATTG---TGAAAGTGAGTAATGGCCCAGAAATCAAAGGAGAGGGAAAAATACGGTAGGTGAATA-TGGTTGTAATGCTAATTTAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866396 137 - 170124641 t-aaaaaatattttaaGGTAAAGGAAAAGTAGGTATAGAATAGTGAGTCACATACAAATCG---TGAAAGTGAGTAATGGCCCAGAAAGCAAAGGAGAGGGAAAAATATGGTAGGTGAATA-TGGTTGCAATGCTAATTAAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856740 137 - 171882078 T-AAAAAATATTTTAAGGTAAAGGAAAAGTAGGTATAGAATAGTGAGTCACATACAAATTG---TGAAAGTGAGTAATGGCCCAGAAAGCAAAGGAGAGGGAAAAATATGGTAGGTGAATA-TGGTTGCAATGCTAATTAAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140782305 137 - 162156779 t-aaaaaatattttaaggtaaaggaaaagTAGGTATAGAATAGTGAGTCACATACAAATTG---TGAAAGTGAGTAATGGcccagaaagcaaaggagagggaaaaatatGGTAGGTGAATA-TGGTTGCAATGctaattaaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170791 137 +  58131712 T-AAAAAATCTTTTAAGGTAAAGGAAAAGTAGGTATAGAATAGTGAGTCACATACAAATTG---TGAAAGTGAGTAATGGCTCAGAAAGCAAAGGAGAGGGAAAAATATGGTAGGTGAATA-TGGTTGCAATGCTAATTAAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107976901 138 - 132174527 TCAAAAAATATTTTAAGATAAGGGAAAAGAAGGTTTAGAATTGTGAGTCACATACAAATTG---TGAAGGTGAGTAATGGCCCAGAAATCAAAGCAGAGGGGAAATTATGGTAGGTGAATA-TAGTTGCAATGCTACTTGAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58105034  70 - 182113224 T-AAAAAC----------CAAAGGA------------------------------------------------------GTTCAGAAAT---AAGAAAGGGAATGAT---GTAGGTGGATA-TGGTCACAATGCTTAGTGAA
i mm10.chr2                    C 0 I 1647
s canFam3.chr30                 26791268 140 -  40214260 TCAAATAGTATTTTAAGATCAGGCAAAGGTAGATGTGGATTTGTGAGTCATATATGAATTGATTTGAACATGAACATTGACCCAGAAATCCAGTTGGAAGGAA-AATAAGCTGGGTGAATAGTGGTTGGAGTGTTAATAAA-
i canFam3.chr30                I 117 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I

a score=1050807.000000
s hg38.chr14_KI270725v1_random    140728 346 +    172810 -AAAATGTTATTAGCAGCTAGCTCAATTCAAGCTTTGAATAAATAGA------GTGTTTATAACAGTATGCTTAATCTACTGGTGCTAATATTAAGATAATTGTTGAAATATACTT-----AAAAGAAGTTAGTGAAAGCAGAGAATG-AAAGACTATTGAACTTTTCTGGTTTAT-TGTGTAAAAATTTGCCTGTATCCAACA-TACAGGCACAAAAATAAAATACTGGAAATAGAGAGCAAATCTTGGCCATTC-AAATGAGAGTCAGCTATTAATTCTTTGGCCATAGGCTGTACTCCTACAAGCAAACTACGGCTAAAATATGCGATTCAATACAGATACTCA--TTTTT--CAAGTGTTTA
s panTro4.chrUn_GL393505          280205 348 +   1195001 -AAAATGTTATTAGCAGCTAGCTCAATTCAAGCTCTGAATAAATAGAAATAGAGTGTTTATAACAGTATGCTTAATCTACAGGTGACAATAGTAAGATAATTGTTGAAATATACTT-----AAAAGAAATTAGTGAAAGCAGAGAATG-AAAGACTATTGAACTTTTCTGGTTTGT-TTTGTAAAAATTTGCCTATGTCCAACA-TACAGGCACAAAAATAAAATATTGGAAATAG----CAAATCTTGGCCATTC-AAATGAGAGTCAGCTATTAATTCTTGGGCCGTAGGCTGTATTTCTACAAGAAAACTTTGGCTAAAATATGCTATTCAATACAGATACTCA--TTTTT--CAAGTGTTTA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5804359 346 +  72422247 -AAAA-GTTATTAGCAGCTAGCTCAATTCAAGCTTTGAATAAATAGAAATAGAGTGTTTATAACAGTATGCTTAATCTACTGGTGACAATATTAAGATAATTGTTGAAATATACTT-----GAAAGAAGTTAGTGAAAGCAGGGAATG-AAAGACTATTGAACTTTTCTGGTTTGT-TTTGTAAAAATTTGCCTATGTCCAACA-TACAGGCACAAAAATAAAATACTGGAAATAGAGAGCAAATCTTGGCCATTC-AAATGAGAGTCAGCTATTAATTCTTTGCCCATAGGCTGTACTCCTACAAGCAAACG-----TAAAATATGTGATTCAATACAGATACTCA--TTTTT--CAAGTGTTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525634 350 + 121039945 -AAAT-GTTATTAGCAGCTAGCTCAATTCAAGCTTTGAATTAATAGAAATAGAGTGTTTATAACAGTACGCTTAATCTACTGGTGACAATATTAAGATCATTGTTGAAATATACTT-----AAAAGAAGTTAGTGAA---AGAGAAGG-AGAGACTATTGAACTTTTCTGGTTTGT-TTTGTAAAAATTTGCCTATGCCCAACA-TACAGGCACAAAAATAAAACATTGGAAATAGAGAACAAATCTTGGCCATTC-AAATGAGAGTCAGCTATTAATTCTTTGGCCATAGGCTGTATTCCTACAAGCAAACTTTGGCTAAAATATGTGATTCAATACAGATACTCATTTTTTT--CAAGTGTTTA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866533 348 - 170124641 -AAAT-GTTATTAGCAGCTTGCTCAATTCAAGCTTTGAATAAATAGAAATAGAGTGTTTATAACAGTACTCTTAATCTACTGGTGACAATATTAAGATAATTGTTGAAATATACTT-----AAAAGAAGTTAGTGAAAGCAGAGAATG-AAAGACTATTGAACTTTTCTGGTTT-----TATAAAAATTTGTCTGTGTCCAACA-TACAGGCACAAAAAT-AAATATTGGAAATAGAGAGCAAATCTTGGCCATTC-AAATGAGAGTTAGCTATTAATTCTTTGGTCATAGGCTGTATTCCTACAAGCAAACTTTGGCTAAAACATGTGACTCAATACAGATACTCATTTTTTT--CAAGTGTTTA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147856877 348 - 171882078 -AAAT-GTTATTAGCAGCTTGCTCAATTCAAGCTTTGAATAAATAGAAATAGAGTGTTTATAACAGTACTCTTAATCTACTGGTGACAATATTAAGATAATTGTTGAAATATACTT-----AAAAGAAGTTAGTGAAAGCAGAGAATG-AAAGACTATTGAACTTTTCTGGTTT-----TATAAAAATTTGTCTGTGTCCAACA-TACAGGCACAAAAAT-AAATATTGGAAATAGAGAGCAAATCTTGGCCATTC-AAATGAGAGTTAGCTATTAATTCTTTGGTCATAGGCTGTATTCCTACAAGCAAACTTTGGCTAAAACATGTGACTCAATACAGATACTCATTTTTTT--CAAGTGTTTA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140782442 348 - 162156779 -aaat-gttattagcAGTTTGCTCAATTCAAGCTttgaataaatagaaatagaGTGTTTATAACAGTACTCTTAATCTACTGGTGACAATATTAAGATAATTGTTGAAATATACTT-----AAAAGAAGTTAGTGAAAGCAGAGAATG-AAAGACTATTGAACTTTTCTGGTTT-----TATAAAAATTTGTCTGTGTCCAACA-TACaggcacaaaaat-aaatattggaaataGAGAGCAAATCTTGGCCATTC-AAATGAGAGTTAGCTATTAATTCTTTGGTCATAGGCTGTATTCCTACAAGCAAACTTTGGCTAAAACATGTGACTCAATACAGATACTCAttttttt--CAAGTGTTTA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36170928 348 +  58131712 -AAAT-GTGATTAGCAGCTTGCTCAATTCAAGCTTTGAATAAATAGAAATAGAGTGTTTATAACAGTACTCTTAATCTACTGGTGACAATATTAAGATAATTGTTGAAATATACTT-----AAAAGAAGTTAGTGAAAGCAGAGAATG-AAAGACTATTGAACTTTTCTGGTTT-----TATAAAAATTTGCCTATGTCCAACA-TACAGGCACAAAAAT-AAATATTGGAAATAGAGAGCAAATCTTGGCCATTC-AAATGAGAGTTAGCTATTAATTCTTTGGTCATAGGCTGTATTCCTACAAGCAAACTTCGGCTAAAATATGTGACTCAATACAGATACTCATTTTTTT--CAAGTGTTTA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107977039 355 - 132174527 -TGAT-GTTATTAGCAGCTAGCTCAATTCAAGCTTTGAAGAAATAGAAATAGAGTGTTTATAACAGTACTCTCAATCTACTGGTGACAATATTAAGACAATTGTTGATATATACTTAAAAGAAAAGAAGTTAGTGAAAGCAGAGAAGG-AAAGCCTATTGAACTTTTATGGTTTGC-TTTGTAAAAATGTTCCCATGTCCAACATTACATGCACAAAAATAAAATACTGAAAATAG----CAAATCTTGGCCATTC-AAATGAGAGTCAACTATTAATTCTTTGGCCATAGGCTCTATTTCTACAAGCAAACTTTAGCTAAAATATGTGACTCAATACAGATACTATTTTTTCC--CAAGAGTTTA
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26791408 310 -  40214260 ATAAC-GTGATTGGCAGCTCACTCAGTT-------GGGAGAGGCAGAAAAGCAGTG------ACACTACATCTGATGTATGGATGACAATACAAAGGCTAATGTTAGAATATAATTTAAAAAGAAGAAATTAG----AGCAAAGAATGAAAAGACAAATGAAATTGTCTATTTCATCCTTGTGAAAATCTTCATATATCTAACA-CTTGCGCTCAA--------------------------------GGCTATTCTAAATGTCAGGTGGCT----ATTCTTTGGCTTTGGGCTATTTTTCTACAAGCAAATTTT-GCTAGAATATGTGATTCAATACAAATACTGTTTTCTTCCACAAATGTTTA
i canFam3.chr30                C 0 I 10
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I

a score=810352.000000
s hg38.chr14_KI270725v1_random    141074 282 +    172810 CAACCtgtttgagtccatttggactgctgtaacaaattaccttagactgggtaatttataaaccaaatttattattctcagttctgggggttgggaagtccaagatttaggtgccagcagagttgttacctggtgaggtttgtttctcaaa--------cttactgctgcatcttcacttggcataaggacaaaaggggcaaagtagctccctatgggttcttttataaggggactaacccattcatgatggctcccc----aaccc----ccttaacctactcacatcccaaagacc
s panTro4.chrUn_GL393505          280553 282 +   1195001 CAAGCtgtttgagtcgatttggactgctataacaaattaccttagactgggtaatttataaaccaaatttattattctcagttctgggggttgggaagtccaagatcaaggtgccagcagagttgttacctggtgaggtttgtttctcaaa--------cttactgctgcatcttcacatggcataagggcaaaaggggcaaagtagctccctatgggttcttttataaggggactaacccattcatgacggctcccc----aaccc----cctaaacttactcatatcccaaagacc
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5804705 281 +  72422247 CAACCtgtttgagtccatttggactgctgtaacaaattaccttagactgggtaatttataaatcaaatttgttattctcagttctgggggttgggaagtccaagatctaggtgccggcagagatgttacctggtgaggtttgtttctgaca--------cttactgctgcatcttcacatggcataagggcgaaaggggcaaagtagctccctatgggttcttttataaggggactaacacattcatgacggctcccc----aa-ac----ccttaacctactcacatcccaaagacc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53525984 281 + 121039945 CAACCtgtttgagtctatctggactgctgtaacaaattaccttagactgggtaatttataaacagaatttattgttctcagttctgggggttgggaagtccaagatcaaggtgccagcagagttgttatctggtgaggtttgtttctcaaa--------cttactgctgcatcttcacgtggcataagggcaaaaggggcaaagtagctccctaagggtt-ttttatgaggggactaatgcattcatgaaggctcccc----acccc----ccataacctactcacatcccaaagacc
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145866881 282 - 170124641 CAACCtgcttgagtccatttggactgctgtaacaaattaccttagactgggtaatttataaacagaaattattgttctccgttctgggagttgggaagtccaagatcaaggaaccagcagagttgttatctgatgaggtttgtttctcaaa--------cttactgctgcatcttcacatggcataagggcaaaaggggcaaagtagctccctaagagttcttttataagggtgctaacccattcatgagggctcccc----acccc----ccatgacctactcacatcccaaagacc
i rheMac3.chr7                 C 0 I 369
s macFas5.chr7                 147857225 282 - 171882078 CAACCtgcttgagtccatttggactgctgtaacaaattaccttagactgggtaatttataaacagaaattattgttctccgttctgggagttgggaagtccaagatcaaggaaccagcagagttgttatctgatgaggtttgtttctcaaa--------cttactgctgcatcttcacatggcataagggcaaaaggggcaaagtagctccctaagggttcttttataagggtgctaacccattcatgagggctcccc----acccc----ccatgacctactcacatcccaaagacc
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140782790 282 - 162156779 CAACCTGCTTGAGTCCATttggactgctgtaacaaattaccttagactgggtaatttataaacagaaattattGTTCTCCGTTCTGggggttgggaagtccaagatcaaggaaccAGCAGAGTTGTTATCTGATGAGGTTTGTTTCTCAAA--------CTTACtgctgcatcttcacatggcataAGGGCAAAAGGGGCAAAGTAGCTCCCTAAGGGTTCTTTTATAAGggtgctaacccattcatgagggctcccc----ACCCC----CCATGACCTACTCACATCCCAAAgacc
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36171276 282 +  58131712 CAACCtgtttgagtccatttggactgctgtaacaaattaccttagactgggtaatttataaacagaaattattgttctccgttctgggggttgggaagtccaagatcaaagaaccagcagagttgttatctgatgaggtttgtttctcaaa--------cttactgctgcatcttcacatggcataagggcaaaaggggcaaagtagctccctaagggttcttttataagggtgctaacccattcatgagggctcccc----acccc----ccatgacctactcacatcccaaagacc
i chlSab2.chr26                C 0 I 192
s calJac3.chr10                107977394 297 - 132174527 CAACCCAttttagtccatttagactgctataacaaattacgttagactgtgtaatttataaacagaatttattgttcacagttctgagggttgggaagtccaaaactaaggtgccagca-agttggtatctggtgaggtttgtttctcatagatggcaccttactgctgtatcttcacatggcataagggcaaaaggggaaaactagcttcctaaggattcttttataagggcactaaattattcatgaaggctccccctcaactcccgtgccatgacctacttatatccaaaaggcc
i calJac3.chr10                C 0 I 2
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I
e canFam3.chr30                 26791718  10 -  40214260 I

a score=3894.000000
s hg38.chr14_KI270725v1_random    141356 3 +    172810 gcc
s panTro4.chrUn_GL393505          280835 3 +   1195001 tcc
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5804986 3 +  72422247 tcc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53526265 3 + 121039945 tcc
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147857507 3 - 171882078 tcc
i macFas5.chr7                 C 0 I 363
s papAnu2.chr7                 140783072 3 - 162156779 tcc
i papAnu2.chr7                 C 0 I 689
s calJac3.chr10                107977693 3 - 132174527 acc
i calJac3.chr10                I 2 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I
e canFam3.chr30                 26791718 10 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e chlSab2.chr26                 36171558 192 +  58131712 I

a score=18861.000000
s hg38.chr14_KI270725v1_random    141359 55 +    172810 cttatttatttatttatttatttatttatttatttatttatt--------ttttgagatggag
s panTro4.chrUn_GL393505          280838 51 +   1195001 tttatttatttatttatttatttatttatttatttatttatt------------gagatagag
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5804989 63 +  72422247 cttctttatttatttatttatttatttatttatttatttatttatttaatttttgagacggag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53526268 28 + 121039945 cctatttatttatttattt-----------------------------------gagatggag
i nomLeu3.chr6                 C 0 C 0
s calJac3.chr10                107977696 29 - 132174527 tttatttatttatttattt----------------------t------------gagatggag
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I
e canFam3.chr30                 26791718 10 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e chlSab2.chr26                 36171558 192 +  58131712 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=74017.000000
s hg38.chr14_KI270725v1_random    141414 58 +    172810 tcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaacctc
s panTro4.chrUn_GL393505          280889 58 +   1195001 tcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcgctgcaacctc
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805052 58 +  72422247 tcttgctctgttgcccaggctgtggtgcagtggcacaatctcagctcactgcaatctc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53526296 58 + 121039945 tcttgctctgttgcccaggctggagtgcagcggcacaatctcagctcactacaacctc
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36171750 58 +  58131712 tcttgctctgttgcccaggctgaagtgcagtggcacaatctcagctcactgcaacctc
i chlSab2.chr26                I 192 C 0
s calJac3.chr10                107977725 58 - 132174527 tcttgctatgtcacccaggctggagtgtagtggcatgatctcggctcactgcaacctc
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I
e canFam3.chr30                 26791718 10 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=3861.000000
s hg38.chr14_KI270725v1_random    141472 3 +    172810 tgg
s panTro4.chrUn_GL393505          280947 3 +   1195001 tgc
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58768464 3 + 158137892 TGG
i gorGor3.chr7                 N 0 I 4971
s ponAbe2.chrUn                  5805110 3 +  72422247 tgc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53526354 3 + 121039945 tgc
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36171808 3 +  58131712 tgc
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107977783 3 - 132174527 tgc
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I
e canFam3.chr30                 26791718 10 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=272701.000000
s hg38.chr14_KI270725v1_random    141475 225 +    172810 ttcccaggttcaagcaattcttctgcctcagcctcccgagtagctgggattacaggcgtgtgccaccacacctggctaatttttgtatttttagtaaagatggggttttaccatgttggccaggctggtcttgaactcctgacctcatgatctgtccacttcggcctcccaaagtgctgggattacaggtgtgagccactgtgtccagcctggcctcacatctta
s panTro4.chrUn_GL393505          280950 225 +   1195001 ttcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccacacctggctaatttttgtatttttagtagagatggggttttaccatgttggccaggctggtcttgaactcctgacttcgtgatctgtccacttcggcctcccaaagtgctgggattacaggtgtgagccactgtgtccagcctggcctcacatctta
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805113 225 +  72422247 ttcccaggttcaagcaattctcccacctcagcctcccgagtagctgggattacaggcgtgtgccaccacacctcgctaatttttgtattttttgtagagatggggttttatcatgttggccaggctggtcttgaactcctgacctcatgatctgtccacttcagcatcccaaagtgctgggattacaggtgtgagccattgtgtccagcctggcctcacatcaca
i ponAbe2.chrUn                C 0 I 33
s nomLeu3.chr6                  53526357 225 + 121039945 ttccagggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggcgtgtgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccatgctggtcttgaactcctgaccttgtgatctgtccacttcagcctcccaaagtgctgggattacaggtgtgagccactgtgtccagcctggcctcacatctta
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36171811 225 +  58131712 ttcccaggttcaagcaattctcctgcttcatcttcccaagtagctgggattacaggcacatgccaccatgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcttgacctcgtgatctgtccacttcagcctcccaaagtgccgggattacaggcatgagccactgtgtccagccTggcctcacatctta
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107977786 224 - 132174527 ctcccaggttcaagcaattctcctgcctcagccttccaagtagcttggattacaggagtgtgccacaacacctggctaatgtttgtatttttaatagagatggcattct-ccatgttggccaggctggtctagaactcctgaccatgtgatccaaccatgtcagactcccaaagtgctgggattacaggtgggagccaccgtggtcagcctggcctcacctctta
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I
e canFam3.chr30                 26791718  10 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=5730.000000
s hg38.chr14_KI270725v1_random    141700 6 +    172810 acacca
s panTro4.chrUn_GL393505          281175 6 +   1195001 acacca
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53526582 6 + 121039945 acacca
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172036 6 +  58131712 acacca
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978010 6 - 132174527 acacca
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I
e canFam3.chr30                 26791718 10 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I
e ponAbe2.chrUn                  5805338 33 +  72422247 I

a score=54447.000000
s hg38.chr14_KI270725v1_random    141706 57 +    172810 acatattgggaattagatttcaatatatgagttttggagagatataaactttaggcc
s panTro4.chrUn_GL393505          281181 57 +   1195001 acatatcaggaattagacttcaatatatgaattttggagagatataaactttcagct
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805371 52 +  72422247 acatat-----attagatttcaatatatgaattttgaagagatatatactctcagcc
i ponAbe2.chrUn                I 33 C 0
s nomLeu3.chr6                  53526588 57 + 121039945 acatattgggaattagatttcaatatatgaattttggagagatataagctttcagcc
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172042 57 +  58131712 acatattgggaattagatctcaatatatgaattttggagagatgtaaagtttcagcc
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978016 56 - 132174527 atatattgggaattccatttcaatatatgaa-cttagagagctataaacagtgagcc
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58105104 1647 - 182113224 I
e canFam3.chr30                 26791718 10 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=20473.000000
s hg38.chr14_KI270725v1_random    141763 13 +    172810 cacagcaCAAACC
s panTro4.chrUn_GL393505          281238 13 +   1195001 cacagcaCAAACC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805423 13 +  72422247 catagcaCAAACC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53526645 13 + 121039945 catagcaCAAACC
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172099 13 +  58131712 catagcaCAAATC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978072 13 - 132174527 cctagcaCAAATC
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58106751 13 - 182113224 CACGGCATAAACC
i mm10.chr2                    I 1647 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e canFam3.chr30                 26791718 10 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=185955.000000
s hg38.chr14_KI270725v1_random    141776 126 +    172810 AAGGATGAATGTATGAGGCACCTGTCAAA-ATACACATTTGAAAAGATCAGAACGTCTGCAATGC-CAAATGAATTACATTTGTAGAGGTAAATTCTAACAATGAAATGAGAAGAACTGCAAACAGAA
s panTro4.chrUn_GL393505          281251 125 +   1195001 AAGGATGAATGTTTGAAGCCTCTGAGAAA-ATAAACATTTGAAAATATCAGAACGTCTGCAATGC-CAAATTAATTACATTAGTAGAGGCAAATTCTAACAATGAAATGAGA-GAACTGCAAACAGAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805436 126 +  72422247 AAGGATGAATGTTTGAGGCACCTGTCAAA-ATACACATTTGAAAAGATCAGAACGTCTGGAATGC-CAAATGAATTACATTAGTAGAGGCAAATTCTAACAATGAATTGAGAAAAACTGCAAACAGAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53526658 126 + 121039945 AAGGATGAATGTTTGAGGCACCTATCAAA-ATACACATTTGAAAAGAGCAGAATGTCTGGAATGC-CAAATGAATTACATTAGTAGAGGCAAATTCTAACAATGAAATGAAAAGAACTGCAAACAGGA
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172112 126 +  58131712 AAGGTTTAATGTTTGAGGCACCTGCCAAA-ATACACATTTGAAAAGAGTAGAATGCCTGGAATGC-CAAATGAATTACATTAGTAGAGGCAAATTCTAACAATGAAATGAAAAGAACTGCAAACAGAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978085 126 - 132174527 AAGTTTGAATTTTTGAAGCACTTGTCAAA-ATATACATTTGAAAAGAGCAGAATGTCTGGAATGC-CAAATGAATTACATTAGCAGAGGCAAATACTAACAATGAAATGAAAACAAATGCGAAAGAAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58106764 108 - 182113224 AAAGGTCAAAAACTGAGTTACCCATCAAA---ACATGTTTG-----------ATGCAAGAAACTC-CG---GTATTACACTAGCAGAGA-AAATTCTAACAAC-AAATGAAAAGGAATAAAAGCTGAT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26791728 127 -  40214260 AAGGTTGAAAGTC-GAGATACATATCAAAAATACACATTTGAAAAGAGCAGAGAATCTAGAATGCTTAAATGGATTACATTAGTAGAGGCAAATTCAAATAGCTAAATGGAAAAGAATGTAAACACAG
i canFam3.chr30                I 10 C 0
e panPan1.JH650621               9109608 2007 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=5422.000000
s hg38.chr14_KI270725v1_random    141902 4 +    172810 GGAA
s panTro4.chrUn_GL393505          281376 4 +   1195001 AGAA
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9111615 4 -  12672142 AGAA
i panPan1.JH650621             I 2007 I 492
s ponAbe2.chrUn                  5805562 4 +  72422247 AGAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53526784 4 + 121039945 AGAA
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172238 4 +  58131712 AGAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978211 4 - 132174527 AAAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58106872 1 - 182113224 -G--
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26791855 4 -  40214260 AGAA
i canFam3.chr30                C 0 C 0
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=180370.000000
s hg38.chr14_KI270725v1_random    141906 123 +    172810 TCACAGAGAGAACCATTTAATTTTAACATTGAGGAAAAACTTTGAATGTGGGTTCCATCCAATTGTACAATAACTCAATGT---------------------ACACAGC----------------------------ATCAACACTTTTAAAACATTGAGATAAA----ATATTTT
s panTro4.chrUn_GL393505          281380 123 +   1195001 TCACAGAGAGAACCGTTTAATTTTAACATTGAGGAAAAACTTTGAATGTGGGTTCCATTCAATTGAACAATAACTAAATGA---------------------ATGCAGC----------------------------ATCAACACTTTTAAAATATTGAGATAAA----ATATTTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805566 120 +  72422247 TCACAGAGAGAACCATTTAATTTTAACATTGAGGAAAAACTTTGAATGTGGGTTCCATTCAATTGTACA--TACTCAACGT---------------------ATACAGC----------------------------ATCAACAC-TTTAAAACATTGAGATAAA----ATACTTT
i ponAbe2.chrUn                C 0 I 253
s nomLeu3.chr6                  53526788 123 + 121039945 TCACAGAGAGAACCATTTAATTTTAACATTGAGGAAAAACTTTGAATGTGGGTTCCATTCAATTGTACAATAACTCAATGT---------------------ATACAGC----------------------------ATCAACACTTTTAAAACATTGAGATAAA----ATATTTT
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172242 123 +  58131712 TCACAGAGACAACCATTTAATTTTAACATTGAGGAAAAACTTTGAATGTGGGTTCCATTCAGTTGTGCAATAACTCAGTGT---------------------ATACAGC----------------------------ATCAACACTTTTAAAACATTGAGATAAA----ATATTTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978215 123 - 132174527 TCACAGAGAGAAACACTTAATTTTAACATTGAGGAAAATCTTTGAATGTGGGTTCCATTCAATTGTACAATAGCTCGATGT---------------------ATATAGC----------------------------ATCAACACTTTTAAAATATTGAGATAAA----ATATTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58106873 115 - 182113224 ----AGAGAGAAATATCTAATCTCAGCATTGAGGAAAAGCTTC-AGGATGCGTTCTGCTCAATTGCAAAATAGTTCAGTAA---------------------ATATATT--------------------------------GCATTTTTTTCCAAATGAGATTAACATCATAT---
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26791859 168 -  40214260 --TCAGAGAGGAACATTTAATTTTAGCACTGATGAAAAACTGA-AACATGGGTTCT-TTCAGTTGTGCAATAGTACAAACTTTTATTTTTTTTCCAGTCGTGATACAATCACTTTCATTTGATGTAATGCCAGAAGGATTAATATTTTGGAGAAATTGTAATAAA----ATATTTA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9111619 492 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I

a score=41687.000000
s hg38.chr14_KI270725v1_random    142029 46 +    172810 -TGGA------TTTTATCAAATTT-----------------------------------GATGTAATGCTAGAAGAAGAA------TTCATACT
s panTro4.chrUn_GL393505          281503 46 +   1195001 -TGGA------TTTTATCAAATTT-----------------------------------GATGTAATGCTAGAAGAAGAA------TTCATACT
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53526911 47 + 121039945 -TGGA------TTTTATCAAATTT----------------------------------GGATGTAATGCTAGAAGAAGAA------TTCATACT
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172365 47 +  58131712 -TGGA------TTTTATCAAATTT----------------------------------GTATGTAATGCTAGGAGAAGAA------TTCATACT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978338 47 - 132174527 -TGAA------TATTATCAAATTA----------------------------------GGATGTAATGCTAGGAGAAGAA------TTCATACT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58106988 47 - 182113224 -TGGA------TTTTATAAGATTT----------------------------------GGATGTGATACCAAGACAAAGA------TTAATACC
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26792027 94 -  40214260 TCGGGTTCtttttttttaagattttacttacttattcacgatagacatagagagaggcagagatacagacagagggagaaacagactccatgcc
i canFam3.chr30                C 0 I 93
e panPan1.JH650621               9111619 492 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I
e ponAbe2.chrUn                  5805686 253 +  72422247 I

a score=21437.000000
s hg38.chr14_KI270725v1_random    142075 26 +    172810 TCGAAGGGGCTGTGATAAATTAAAGG
s panTro4.chrUn_GL393505          281549 26 +   1195001 TTGAAGGGACTGTGACAAATTAAAGG
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53526958 26 + 121039945 TTGAAGGGACTGTGATAAATTAAAGG
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172412 26 +  58131712 TTGAAGGGACTGTCATAAATTAAAGT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978385 21 - 132174527 TTGAAGAGACTGTCATAAAT-----G
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58107035 26 - 182113224 CAGAAAGGCTTGTGTTAAATTAAAGG
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9111619 492 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e canFam3.chr30                 26792121 93 -  40214260 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I
e ponAbe2.chrUn                  5805686 253 +  72422247 I

a score=312656.000000
s hg38.chr14_KI270725v1_random    142101 269 +    172810 ATTTATTTAGTTCTGTTTGCACTTGCTACATGCTGTTTCCAATACGAATATTTTCACAAGATTTACATGTCTAATACATGAGTTGGCTCCTGACCTTGAAGCAATTGTTAGCAATAGATACACTGGTAAAAAAAA-TTATCTTCTGCTGTCCTGCATGACCATGGACATGGACATCTTAGTATTTATGCATAATAAAAACTTTCA-----------GTTCAGCTTAGTAAATATTTATTGACAATGTGCTAATCATGAG--GAGGACTGTGGATAAAGGTGGA
s panTro4.chrUn_GL393505          281575 270 +   1195001 ATTTATTTAGTTCTGTTTGCACTTGCTACATGCTGTTTCCAATATGAATATTTTCACAAGATTTACATGTCTAATACATGAGTTGGCTCCTGACCTTGAAGCAATCGTTAGCAATAGATACACTGGTAAAAAAAAATTATCTTCTGCTGTCCTACATGACCATGGACATGGACATCTTAGTATTTATGCATAATAAAAACTTTCA-----------GTTCAGCTTAGTAAATATTTATTGACAATATGCTAATCATGGG--GAGGAATATGGATAAAGGTGGA
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53526984 268 + 121039945 ATTTATTTAGTTCTGTTTGCACTTGCTACATGCTGTTTCCAGTATGAATATTTTCACAAGATTTACATGTCTAATACATGAGTTGGGTCCTGACCTTGAAGCAATTGTTAGCAATAGATACACTGGTAAAAAAA--TTATCTTCTGCTGTCCTGCAAGACCATGGACATGGACATCTTAGTATTTATGCATAATAAAAACTTGCG-----------GTTCAGCTTAATAAGTATTTATTGACAATGTGCTAATCATGAG--GAGAACTGTGGATAAAGGTGGA
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36172438 267 +  58131712 ATTTATTTAGTTCTGTTTGCACTTGCTATATGCTGTTTCCAATGTGAATATTTTCACAAGATTTACCTGTCTAATACATGAGCTTACTCCTGACCTTGAAGCAATTGTTAGCAATAGATACAATGGTAAAAAA---TTACCTTCTGCTGTCCTGCATAACCATGGACATGGACATCTTAGTATTTATGCATAATAAAAACTTTCA-----------GTTCAGCTTAATAAGTATTTATTGACAACGTGCTAATCATGAG--GAGGACTGGGGATAAAGGTGGA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978406 268 - 132174527 ATTTACTTGGTCCTGTTTGCACTTGCTACATGCTGTTTTCAATATGAATATTTTCACAAGATTTACATGCTTAATACATGAGTTGGCTCTTAACCTTGCAGCAATTGTTACCAATAGATACACTGGTAAAAAAA--TTATCTTCTGCTGTCCTGCATGAGCATGGACATGAACATCTTAGTATTTATGCATAATAAAAACTTTCA-----------GTTCCACTTAATAAATATTTATTGACAATGTGCTAATCATAAG--GAGGACTGTGGATAAAGGTGGA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58107061 261 - 182113224 ATTTGTTATGTTCTCTTTATGTGCGACATACCCTGTTTCCAATATTAATATTTTGGCAAGATGAACGTGTCTTATATAAGCCTTGGCTCCAAATTTTGATTCAATTGTTACTAATATAATCATTGGTAGAAAA---AAATCAGCTGCTGTCTGAAATGAGGGCAGGC-------TCATAGAGTTTGTATGAAGAACAGGCTTTAA-----------ACTGAGCTTAATGAG-AATTATTAACAATGCTTTGATCTTTGGTAAAGGATTGCTGTTCAGCACAAA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26792214 273 -  40214260 GTTTATCGGGTTCTATCTGCACTTGATGTGCACTGTTTTCAATACATATATTTTGACAAGATTCACATGTTTAATACAAGACTTGGCTGCTGACGTTACAGCAGTTTTTACCAGCATATACACTGGAAGAATACAATTATCTTCTGTTGTCTGGGGTGAGCATGGACATG-------TGGTGTTTATGCAAATTAAGGAATTGGAGGCATTTATATGTTTAGTTTAGTGAACACTTATTGACAATGTGCTAATCTTGGC--CAGGAGTGAAGAT-AGTTTGGA
i canFam3.chr30                I 93 C 0
e panPan1.JH650621               9111619 492 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e papAnu2.chr7                 140783075 689 - 162156779 I
e macFas5.chr7                 147857510 363 - 171882078 I
e ponAbe2.chrUn                  5805686 253 +  72422247 I

a score=16916.000000
s hg38.chr14_KI270725v1_random    142370 13 +    172810 --TGATAAAGATAAA
s panTro4.chrUn_GL393505          281845 13 +   1195001 --TGATAAAGATAAA
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53527252 13 + 121039945 --TGATAAAGATAGA
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147857873 13 - 171882078 --tagtacagatagg
i macFas5.chr7                 I 363 C 0
s papAnu2.chr7                 140783764 13 - 162156779 --tagtacagatagg
i papAnu2.chr7                 I 689 C 0
s chlSab2.chr26                 36172705 13 +  58131712 --TGATAAAGATAGA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978674 13 - 132174527 --TGATAAAGATAGA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58107322 13 - 182113224 --GAGCAGGGATAAC
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26792487 13 -  40214260 GGCGAGAGAGAGA--
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9111619 492 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e rheMac3.chr7                 145867163 369 - 170124641 I
e ponAbe2.chrUn                  5805686 253 +  72422247 I

a score=36482.000000
s hg38.chr14_KI270725v1_random    142383 12 +    172810 TTTAAGTTGGGA
s panTro4.chrUn_GL393505          281858 12 +   1195001 TTTAAGTTGGCA
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53527265 12 + 121039945 TTTAAGTTGGGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145867532 12 - 170124641 TTTAAGTTGGGA
i rheMac3.chr7                 I 369 C 0
s macFas5.chr7                 147857886 12 - 171882078 tttcaGTTGGGA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140783777 12 - 162156779 ttTAAGTTGGGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36172718 12 +  58131712 TTTAAGTTGGGA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978687 12 - 132174527 TTTAAGTTGGGA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58107335 12 - 182113224 TTACTCTTGAGA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26792500 12 -  40214260 TTTAAGTTTGGA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9111619 492 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e ponAbe2.chrUn                  5805686 253 +  72422247 I

a score=-2506.000000
s hg38.chr14_KI270725v1_random    142395 2 +    172810 -AA
s panTro4.chrUn_GL393505          281870 2 +   1195001 -AA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805939 2 +  72422247 -AA
i ponAbe2.chrUn                I 253 C 0
s nomLeu3.chr6                  53527277 2 + 121039945 -AA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145867544 2 - 170124641 -AA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147857898 2 - 171882078 -AA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140783789 2 - 162156779 -AA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36172730 2 +  58131712 -AA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978699 2 - 132174527 -AA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58107347 1 - 182113224 --G
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26792512 2 -  40214260 CG-
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9111619 492 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I

a score=1435.000000
s hg38.chr14_KI270725v1_random    142397 1 +    172810 A
s panTro4.chrUn_GL393505          281872 1 +   1195001 A
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9112111 1 -  12672142 A
i panPan1.JH650621             I 492 I 533
s ponAbe2.chrUn                  5805941 1 +  72422247 A
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527279 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145867546 1 - 170124641 G
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147857900 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140783791 1 - 162156779 G
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36172732 1 +  58131712 G
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978701 1 - 132174527 A
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26792514 1 -  40214260 G
i canFam3.chr30                C 0 C 0
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107348 0 - 182113224 C

a score=77160.000000
s hg38.chr14_KI270725v1_random    142398 26 +    172810 CTACCACCACTACA----TCTACAAGGGCT
s panTro4.chrUn_GL393505          281873 26 +   1195001 CTACCACCACTACA----TCTACAAGAGCT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805942 26 +  72422247 CTACCACCACTACG----TCTACAAGGGCT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527280 26 + 121039945 CTACAACCACTATA----TCTACAAGGGCT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145867547 26 - 170124641 CTACAACCACTACA----TTGACAAGGGCT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147857901 26 - 171882078 CTACAACCACTACA----TTGACAAGGGCT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140783792 26 - 162156779 CTACAACCACTACA----TTGACAAGGGCT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36172733 26 +  58131712 CTACAACCACTACA----TTGACAAGGGCT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978702 23 - 132174527 CTACAACCACTAAA----TCTACAAGG---
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58107348 22 - 182113224 --------ATTGCATGGCTCTACAAGGGCT
i mm10.chr2                    C 0 I 815
s canFam3.chr30                 26792515 24 -  40214260 --CCAAGTGCTAAT----TCTATAAGGGCT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9112112 533 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I

a score=407661.000000
s hg38.chr14_KI270725v1_random    142424 132 +    172810 GAAAGTATATACAAGTCAGAAGCACACAGAAATCACTGAACCACAAAGTAAATGGCCGTAAGTGCTGTTATATACCCAAAGCATGTCCTACTTATA----TAGTCCTTTAAATGGATAAATAATACATTAA------------TTCTG
s panTro4.chrUn_GL393505          281899 100 +   1195001 GAAAGTATATACAAGTCAGAAGCACACAGAGATCACTGAACCACAAA--------------------------------ACCATGTCCTACTTATA----TAGTCCTTTAAATGGATAAATAATACATTAA------------TTCTG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5805968 132 +  72422247 GAAAGTATATACAGGTCAGAAGCACACAGAAATCACTGAACCACAAAGTAAATGGCCATAAGTGCTGTTATATACCCAAACCATGTCCTACTTATA----TAGTCCTTTAAATGGATAAATAATACATTAA------------TTCTG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527306 132 + 121039945 GAAAGTATATACGAGTCAGAAGCACACAGAAATCACTGAACCACAAAGTAAATGGCCATAAGTGCTGTGATATACCCAAACCATGTCCTACTTACA----TAGTCCTTTAAATGGATAAATAATACATTAA------------TTCTG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145867573 132 - 170124641 GAAAGTATATACAAGTCAGAAGCGCACAGAAATCACTGAACCATGAAGTAAATGGCCATAAGTGCTGTGATATACCCAAACCATGTCCTACTTATA----TAGTCCTTTAAATGCATAAATAATACATTAA------------TTCTG
i rheMac3.chr7                 C 0 I 3
s macFas5.chr7                 147857927 132 - 171882078 GAAAGTATATACAAGTCAGAAGCGCACAGAAATCACTGAACCACGAAGTAAATGGCCATAAGTGCTGTGATATACCCAAACCATGTCCTACTTATA----TAGTCCTTTAAATGCATAAATAATACATTAA------------TTCTG
i macFas5.chr7                 C 0 I 3
s papAnu2.chr7                 140783818 132 - 162156779 GAAAGTATATGCAAGTCAGAAGCGCACAGAAATCACTGAACCATGAAGTAAATGGCCATAAGTGCTGTGATATACCCAAACCATGTCCTACTTATA----TAGTCctttaaatgcataaataatacattaa------------ttcTG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36172759 132 +  58131712 GAAAGTATATACAAGTCAGAAGTGCACAGAAATCACTGAACCACGAAGTCAATGGCCATAAGTGCTGTGATATACCCAAACCATGTCCTACTTATA----TAGTCCTTTAAATGCATAAATAATCCATTAA------------TTCTG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978725 118 - 132174527 --------------GTCAGAAGCATACAGAAATCACTGAACCATTAATTAAATGGCCATGAGTGCTATGACATACCCAAACCATGTCCTACTTAAA----TAGTCCTTTAAATGGATAAATAATACCTTAA------------TTCTG
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26792539 148 -  40214260 GACAATACATACAAGTCAGGAACACATAAAAATCACTGAAATGCAGGGAAGATAGCTATAGGTGTTACAGTATACCCAAATCAATTCCTATTTATATAGTTAGTCCTTTGAATGGATGAATTTTTTTTAAAAAGGTAGTTAGTTTCTG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9112112 533 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I

a score=444890.000000
s hg38.chr14_KI270725v1_random    142556 233 +    172810 ACGGGGAAGGGAGAAAGTTTCTAGGAATAGTTCTTTAAAAAGTTGCATCAGTTTTGATTAATACAT----AGGAAGAGACTGTTAC-AGAAGAAGAGCTAGCTAACAGAAGACCTAGCATCATTTTATTCTTGCACAATATCAGGGAACCCAACAGTTTTGTCAGCAGTAGCTACTTTTAGTTTCCTTGGATA-CTTGAGATCATCTGGGAA------GATTGTGGTAAGTAAGGCTGCTGATGA
s panTro4.chrUn_GL393505          281999 233 +   1195001 ACTGGGAAGGGA-AAAGTTTCTGGGAATAGTTCTTAAAAAAGTTGCATCAGTTTTGATTAATACAT----AGAAAGAGACTGTCAC-AGAAGAAGAGCTAGCTAATGGGAGACCTAGCATAATTTTATTCTTGCATAATATCAGGGAACCCAACAGTTTTGTCAGCAGTAGCTACTTTTAATTTCCTTGGATAACTTGAGATCATCTGGGAA------GAATGTAGTAAGTAAGGCTGCTGATGA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5806100 233 +  72422247 ACTGGGAAGGGAGGAAGTTTCTAGGAATAGTTCTTTAAAAAGTTGCATCAGTTTTGATTAATACAT----AGAAAGAGACTGTTAC-AGAAGAAGAGCTAGCTAACGGAAGACCTAGCATAATTTTATTCTTGCACAATATCAGGGAACCCAACAGTTTTGTCAGCAGTAGCTACTTTTAATTTCTTTGGATA-CTTGAGATCATCTGGGAA------GATTGTGGTAAGTAAGGCTGATGATGA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527438 230 + 121039945 ACTGGGAAGGGAGAAAGTTTCTAGGAATAGTTCTTTAAAAAGTTGCATCAGTTTTGATTCATACAT----AGAAAGAGACTGCTAC----AGAAGAGCTAGCTAAAGGAAGACCTCACATAATTTTATTCTTGCACAATATCAGGGAACCCAACAGTTTTGTCAGCAGAAGCTACTTTTAACTTCTTTGGATA-CTTGAGATCATCTGGGAA------GATTGTGGTAAGTAAGGCTGCTGATGA
i nomLeu3.chr6                 C 0 C 0
s papAnu2.chr7                 140783950 232 - 162156779 ACTGGGAAGGGAGAAAGTTTCTAGGAATAGTTCTTTAAAAAGTTGCATGAGTTTTGATTCATACAT----AGAAAGAGACTGTTAC-AGAAGAAGAGCTAGCTAAT-GAAGACCTAGCATAATTTTATTCTTGAACAATATCAGGGAACCCAACAGCTTTGTCAGCAGAAgctacttttaatttctttggatA-CTTGAGATCATCTGGGAA------GATGGTGGTAAGTAAGGCTGCTGGTGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36172891 229 +  58131712 ACTGGGAAGGGAGAAAGTTTCTAGGAATAGTTCTTTAAAAAGTTGCATGAGTTTTGATTCATACAT----AGAAAGAGACTGTTAC-AGAAGAA---CTAGCTAAT-GAAGACGCAGCATAATTTTATTCTTGAACAATATTAGGGAACCCAACAGCTTTGTCAGCAGAAGTTACTTTTAATTTCTTTGGATA-CTTGAGATCATCTGGGAA------GATGGTGGTAAGTAAGGCTGCTGGTGA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107978843 228 - 132174527 ACTGAGAAGGGAGAATGTTTCTAGGAATAGTTCTCAAAAAAGTTGCATCAGTTTTGATTCATACAC--------AGAGATTGTTCC-AGAAAAAGAACTAGCTAAAGAAGGACCTAGCATAATTTTCTTCTTGCACTATATCAGGGAACCCAACTGTTGTGTCAGCAG-AGCTACTTTTAATTTCTTTGGATA-CTTGAGATCCTCTGGGAA------GATGGTAGTAGGTAAGGCAGCTGataa
i calJac3.chr10                C 0 I 1958
s canFam3.chr30                 26792687 243 -  40214260 GTTGAGATGGGAAAAATCATCTAGGAAGCTTTCTC-AGAAAATTGTATTAATTTTGATTGCTACTTCGGGAGACAAAGGTTATTCTGAAAAGATGAGATAGCTGAAGCAAGGCATAGAGTAATTTTCTTCTTACACAATCTCAGAGAATCCAATAGTTTTAGTAGCAGAAGCTACTTTTTATTTCCTTGGATC-TTTGAGGTCATCTGGGAGGGTGGCGGTGGTGGTAAGTAAGGCTGCTAATGA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9112112 533 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e rheMac3.chr7                 145867705   3 - 170124641 I
e macFas5.chr7                 147858059   3 - 171882078 I

a score=8022.000000
s hg38.chr14_KI270725v1_random    142789 4 +    172810 AGAC
s panTro4.chrUn_GL393505          282232 4 +   1195001 AGAC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5806333 4 +  72422247 AGAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527668 4 + 121039945 AGAC
i nomLeu3.chr6                 C 0 C 0
s papAnu2.chr7                 140784182 4 - 162156779 AGAC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36173120 4 +  58131712 AGAC
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26792930 4 -  40214260 AGAC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9112112 533 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e rheMac3.chr7                 145867705 3 - 170124641 I
e calJac3.chr10                107979071 1958 - 132174527 I
e macFas5.chr7                 147858059 3 - 171882078 I

a score=13321.000000
s hg38.chr14_KI270725v1_random    142793 7 +    172810 TTTGATT
s panTro4.chrUn_GL393505          282236 7 +   1195001 TTTGATT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5806337 7 +  72422247 TTTGATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527672 7 + 121039945 TTTGATT
i nomLeu3.chr6                 C 0 C 0
s papAnu2.chr7                 140784186 7 - 162156779 TTTGATT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36173124 7 +  58131712 TTTGATT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107981029 7 - 132174527 TTTAAAA
i calJac3.chr10                I 1958 C 0
s canFam3.chr30                 26792934 7 -  40214260 TTTGGTT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9112112 533 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e rheMac3.chr7                 145867705 3 - 170124641 I
e macFas5.chr7                 147858059 3 - 171882078 I

a score=220756.000000
s hg38.chr14_KI270725v1_random    142800 134 +    172810 AAGAAAGGATTTATCAGGAgctgggcacagtcgctcatgcctgtaatcccagcca-tgtaggaggatgaggcaggaagactgcttaaatccaggaattagagattaacctgggcaatatagccagaccaccttct
s panTro4.chrUn_GL393505          282243 134 +   1195001 AAGAAAGGATTTATCAGGAGATgggtacagtcgctcatgcctgtaatcccagcca-tgtaggaggatgaggcaggaagactgcttaagtccaggaattagagattaacctgggcaatatggccagaccaccacct
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5806344 134 +  72422247 GAGAAAGGATTTATCAGGagctgggcacagtcgctcatgcctgtaattccagcca-tgtaggaggatgaggcaggaagactgcttaagtccaggaattagagattaacctgggcaatatagccagaccaacttct
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527679 134 + 121039945 AAGAAAGGATTTATCAGGAgctgggcacagtcgctcatgcctgtaatcccagcca-tttaggaggatgaggcaagaagattgcttaaggccaggaattagagatgaacctgggcaatacagccagaccaccctct
i nomLeu3.chr6                 C 0 C 0
s papAnu2.chr7                 140784193 134 - 162156779 AAGGAAGGATTTACCAGGAGCTGGGCatagtcgctcatgcctgtaatcccagcca-tttaggaggatgaggcaggaagattgcttaagggCAGGAATTAGAGATGAACCTGGGAAATATAGCCAGACCAcattct
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36173131 134 +  58131712 AAGGAAGGATTTACCAGGAgctgggcatagtcgctcatgcctgtaatcccagcca-cttaggaggatgaggcaggatgattgcttaagggcaggaattagagatgaacctgggaaatatagccagaccacattct
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107981036 135 - 132174527 AAGAAAGGATTTATCAGGAgctgggcacagcggctcatgcctgtaatcccagccattttagaaggcagagtcaggaagattgcttaaggccagatcttagagatcaacctgggcaatatagctagacccccatct
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9112112 533 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941   0 -  40214260 C
e rheMac3.chr7                 145867705   3 - 170124641 I
e macFas5.chr7                 147858059   3 - 171882078 I

a score=5348.000000
s hg38.chr14_KI270725v1_random    142934 2 +    172810 ct
s panTro4.chrUn_GL393505          282377 2 +   1195001 ct
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9112645 2 -  12672142 ct
i panPan1.JH650621             I 533 I 438
s ponAbe2.chrUn                  5806478 2 +  72422247 ct
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527813 2 + 121039945 ct
i nomLeu3.chr6                 C 0 C 0
s papAnu2.chr7                 140784327 2 - 162156779 ct
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36173265 2 +  58131712 ct
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107981171 2 - 132174527 ct
i calJac3.chr10                C 0 C 0
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941 0 -  40214260 C
e rheMac3.chr7                 145867705 3 - 170124641 I
e macFas5.chr7                 147858059 3 - 171882078 I

a score=667270.000000
s hg38.chr14_KI270725v1_random    142936 433 +    172810 ac--aaaaat-aaaaaaacaattagatgggcattatgg-cacatgcctgtggccccagccattggggagactgaggtaaaaagatcacttgggcccaggagtttgaggctacaataggttgtgattgtgATGGCagtggctgctgccatcatgccagatgcaggggagaggtgtggccggggttgtatgctccctggatttggcaggatgaggacaagtgggagccctgccc-ttccgagttggaatgggagctccctgggtgctgctgcagctgcccaaactgcagctgtagctgtagacctggacctcccactccatggagcagatgggagtttatccaactcccctactctgtccccaccccagcccaccacccagccacccaaaccaatgctgcagactcaggcatccctgcactcttggggagcctgggaacg
s panTro4.chrUn_GL393505          282379 431 +   1195001 ac--aaaaaa-taaaaaaaaaatagatgggcattgtgg-cacatgcctgtggccccggctactggggagactgaggtaaaaagatcacttgggcccaggagtttgaggctacaataagctatgattgtgATGGCagcggctgctgccatcatgccaaaggcagggcagaggtgtggccagggttgtatactccctagagttggcaggatggggacaagtgggagccctgccccttcc---ttggaatgggagctccctgggtgcggctgcagctgcccaaactgcagctgtagctgtagacctgcaccttccactccatggagcagacaggagttcatccaactcccctactatgtccccaccccagcccactacccagccacccaaaccaatgctgcagactcaggcatccctgcactcttggggaggctgggtgtg
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5806480 434 +  72422247 ac--aaaaaa-taaaaaacaattagatgggcattgtgg-cacatgtctgtggccccagctattggggagactaaggtaaaaagatcacttgggcccaggagtttgaggcaacaataagctatgattgtgATGGCagcggctgctgccatcatgccagctgcaggggagaggtgtggccagggttgtttgctccctggagttggcaggatggggacaagtgggagccctgccccttccgagttggaattggagctccccgggtgctgctgcagctgaccaaactgcaactgtaactttagacctggacctctcactccatggagcagacaagagtttatccaactcccctactctgtccccaccccagcccaccacccagccacccaaaccaatcctgcagactcaggcatccctgcactcttggggagcctgggaacg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53527815 434 + 121039945 ac--aaaaaacaaaaaaacaattagatgggcattgtgg-cacatgtgtgtggccccagctattggggagactgaggtaaaaagatcacttgggcccaggagtttgaggctacaataagctatgattgtgATGGCagtggctgctgccatcatgccagctgcagaggggaggtgtggccggggttgtctgctccctggagttggcaggacggggacaagtgggagctctgccccttccgagttagaatgggagctccctgggtgctgctgcagctgcccaaactgcagctgtagctgtagacctggacctcccactccatggagcagacagg-gtttatccaactcccctacactgcccctgccccagcccaccacccagccacccaaaccaatgctgcagactcaggcatccctgcactcttggggatcctgggaacg
i nomLeu3.chr6                 C 0 C 0
s papAnu2.chr7                 140784329 429 - 162156779 ac--aaaaagtaaaaaaaaaattagatgggcattgtgg-cacatgcttGTGTCCCCAGCTATTGGGGAGACCGAGGTAAAAAGATTACTTaggttcaggagtttgaggctacaatgagctatgatcgcgaTGGCAGCGGCTGCTg------tgtggggaggtgtggggaggtgtggCCGGGGTTATATGCTCCCTGGAGTTGGAAGGACAGGGACAAGTGGGAGCCCTGCCCCTTCCGAGTTGGAATGGGAGCTTCCTGGGtgctgctgcagctgcccaaACTGCAGCTGTAGCTGTAGACCTGGGCCTCCCACTCCACAGAGCAGACAGGAATTTATCCAACTTTCCTACTCTGCCCCTGCCCCAGTCCACCACCCAGCCACCCAAACCAATGCTGCAGACTCAGGCACCCTTGCACTCTTGGGGAGTCTGGGAAcc
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36173267 436 +  58131712 acaaaaaaaaaaaaaaaaaaattagatgggcattgtgg-cacatgcttgtgtccccagctattggggagactgaggtaaaaa-attacttaggtccaggagtttgagactacaatgagctataattgtgATGGCagcggctactgccatcatgccagctgcagtggggaggtgtggccggggttatatgctccctagagttggaaggatggggacaagtgggagccctgccccttctgagttggaacgggagcttactgggtgctgctgcagctgcccaaactgcagctgtagctgtagacctgggcctcccactccacagagcagacaggaatttatccaactctcctactctgcccctgccccagtccaccacccagccacccaaaccaatgctgcagactcaggcatccttgcactcttggggagtctgggaacc
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107981173 421 - 132174527 ac--aaaa---cacaaaacaattagatggacattgtggccacatgcttatggccccagctactggggaggctgaggtaaaag-atcactttggcccaggagtttgaggccacagtgagTT---ATTGTGATGACagcggctgctaacatcacaccagctgcagcggggaggtgaagatggggctgtatactccctggagttggcaggacggggacaagtggaagccctgccccttctgagttataatgggagctccctgggtgctgctgcagctgctcaaactgcagctatagttgcagacctgggactcccactccatggagcaggcagtagtcaagccacctccccaactctgcccttgcctt--cccccgactcagcc------accagggcttcagactcaggtattcttgcactcttggggggcctgggaagg
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9112647 438 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941   0 -  40214260 C
e rheMac3.chr7                 145867705   3 - 170124641 I
e macFas5.chr7                 147858059   3 - 171882078 I

a score=1225.000000
s hg38.chr14_KI270725v1_random    143369 1 +    172810 c
s panTro4.chrUn_GL393505          282810 1 +   1195001 c
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9113085 1 -  12672142 C
i panPan1.JH650621             I 438 I 1408
s ponAbe2.chrUn                  5806914 1 +  72422247 c
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53528249 1 + 121039945 c
i nomLeu3.chr6                 C 0 C 0
s papAnu2.chr7                 140784758 1 - 162156779 c
i papAnu2.chr7                 C 0 I 3
s chlSab2.chr26                 36173703 1 +  58131712 g
i chlSab2.chr26                C 0 I 3
s calJac3.chr10                107981594 1 - 132174527 c
i calJac3.chr10                C 0 C 0
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941 0 -  40214260 C
e rheMac3.chr7                 145867705 3 - 170124641 I
e macFas5.chr7                 147858059 3 - 171882078 I

a score=237451.000000
s hg38.chr14_KI270725v1_random    143370 152 +    172810 cccccttgccccttgcaggcttggaggcacctcttcctgctgcctggtctctcccacctcctggctctgtgctctgatctcagagtggggttgggacccagcagggtgctgtcactgcccagccaggtgtgcacaaattggaagcagtgccg
s panTro4.chrUn_GL393505          282811 152 +   1195001 cccctttgccccttgcaggcttggaggcacctcctcctgctccctggtctctcccacctcctggctcagtgctctgatctcagagtggagttgggacccagcagggtgctatcagagcccagccaggtgtgcaaacatttgaagcagtgctg
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5806915 152 +  72422247 ctcccttgccccctgcaggcttggaggcacttcttcctgctgcctagtctctcccacctcctggctctgtgctctgatctcagagtggggatgggacccagcagggtgctgtcacagcccagccaggtgggcacacattggaagcagtgctg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53528250 152 + 121039945 cccccttgctccttgcaggcttggaggtgcctcttcctgctgcctggtctctcccagctcctggctctgtgctctgatctcagagtggggttgagacccagcagggtgctgtcacagtccagccaggtgtgcatacattgggaccagtgatg
i nomLeu3.chr6                 C 0 C 0
s papAnu2.chr7                 140784762 152 - 162156779 ccACCCAGCCCCTTGCAGGCTTGGAGATGCCTCCTCCttctgcctggcctctcccagctcctggctcTGTGCTCTGATGTCAGAGTGGGGTTGGGATCCAGCAGGGCACTGTCACAGCCCAGCCAGGTGTGCACACATTGGGAgcagtgctg
i papAnu2.chr7                 I 3 C 0
s chlSab2.chr26                 36173707 152 +  58131712 ccacccagccccttgcaggcttggagatgcctcctcctgctgcctggcctctcccagctcctggctctgtgctctgatgtcagagtggggttgggatccagcagggtactgtcacagcccagccaggtgtgcacacattgggagcagtgctg
i chlSab2.chr26                I 3 C 0
s calJac3.chr10                107981595 150 - 132174527 ccctcttgctgcttccaggcttagaggagtctactcctgctgcctggtctctcccagatcctgacactattctctaatctcagagtggg--ttgggcccagccaggtgctgtcacagcccagccaggtgtgcatacattaggaacagtactg
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9113086 1408 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941   0 -  40214260 C
e rheMac3.chr7                 145867705   3 - 170124641 I
e macFas5.chr7                 147858059   3 - 171882078 I

a score=1278880.000000
s hg38.chr14_KI270725v1_random    143522 434 +    172810 acatgccagtcccctgccacctcagtcccttctggactttggacactgagaagcaggagcatgggaggggaagatgagggggtccgagggtggcttggcactggcctgcaagtgccccttgatgccagcagcctgggtgccatggatggttgtgggaggcagacaggctcctgggtggaaggtgatgggtccccagtgaagccccacctgcaggctaggctgccagtcctgcagactggaggcaaaactcatggtg-tttttcctgggcccgcccatggctgcccatggaccaatgggcatacatttcctcccctctgacatccataaaagcccaggactcagccagaacagggcagagggcagaggagggaagaatagaggcaggaaggagctatcctttctgctgatagctggagacaatgggagggccagct-------------
s panTro4.chrUn_GL393505          282963 435 +   1195001 acatgccaatcccctgtcacctcagtcccctctggactttggacaccgaggagcagaagcatgggaagggaagctgagggggtctgagggtggctgggcactggcctgcaagtgccccttgatgccagcagcctgggtgccatggatggctgtgggaggcagacaggctcctgggtggaaggggagaggtccccagtgaagccccacctgcaggctaggctgccagttctgcagactggaggcaaaacttatggtgctttttcctgggcccacccatggctgcccatggaccaatgagcatacacttcctctcctctgacgtccataaaagcccaggactcagccagaacagggcagaagacagaggagggaagactagaggcaggaaggagctatcctttctgctgatagctggatacaatgggaaggccagct-------------
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5807067 435 +  72422247 atgtgccaatcccctgccatctcagccccctctggactttggacaccgaggagcaggggcatgggaggggaagctgagggggtctgagggtggctgggcactggcctgcaagtgcctcttggtgccagcagcctgggtgccatgtatggctgtgggaggcagacaggctcctgggtggaaggggatgggtccccactgaagccccacctgcaggctaggctgccagtcctgcagactggaggcaaaactcatggtgctttttcctgggcccacccatggctgcccatggaccaatgggcatacacctcctcccctctgacagccataaaagcccaggactcagccagaacagggcataagacagaggagggaagactagaggcaggaaggagctatcctttctgctgatagctggagacaatgggagggccagct-------------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53528402 435 + 121039945 acatgccagccccctgccacctcagccccctctgaactttgaatactgaggagcaggagcatgggaggggaagctgagggggtctgagggtggctgggcactggcctgcaagtgccccttgatgccagcagcctggttgccatggatggctgtgggaggcagacaggctcctgggtggaagggggtgggtccccagtgaagcccctcctgcaggctaaactgccagtcctgcagactggaggggaaactcatggtgctttttcctgggcccacccatcgctgcccatggaccaatgggcatacacttcctcccctctgacatccataaaagcccaggactcagccagaacagggcagaagacagaggagggaagactagatgcagaaaggagctatcctttctgctaatagctggagacaatgagagggccagct-------------
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145867708 434 - 170124641 acatgccagccccctgccacctcagcctcctctggactttgggcactgaggagcaggagcatgggaggggaagctgt-ggggtctgagggtgacttggcactggcctacaagtgccccttgatgccagcagtctgggtgccatggatggctgtgggaggcagacaggctcctgggtggaaggaggtgggtccccagtgaagccccacctgcaggctaggctgccagtcctgcagactggaggggaaactcagggtgctttttcctgggcccacccatggctgcccatggaccaatgggcatacacttccttccctctgatgtccataaaagcctaggactcagccagaacagggcagaagacagaggagggaagactagctgcagaaaggagctaccctctctgctgatagctggagacaatgggagggccagct-------------
i rheMac3.chr7                 I 3 C 0
s macFas5.chr7                 147858062 434 - 171882078 acatgccagccccctgccacctcagcctcctctggactttgggcactgaggagcaggagcatgggaggggaagctgt-ggggtctgagggtgacttggcactggcctacaagtgccccttgatgccagcagtctgggtgccatggatggctgtgggaggcagacaggctcctgggtggaaggaggtgggtccccagtgaagccccacctgcaggctaggctgccagtcctgcagactggaggggaaactcagggtgctttttcctgggcccacccatggctgcccatggaccaatgggcatacacttccttccctctgatgtccataaaagcctaggactcagccagaacagggcagaagacagaggagggaagactagctgcagaaaggagctaccctctctgctgatagctggagacaatgggagggccagct-------------
i macFas5.chr7                 I 3 C 0
s papAnu2.chr7                 140784914 434 - 162156779 acatgccagccccctgccacctcagcctcctctggactttgggcactgaGGAGCAGGAGCATGGGAGGGGAAGCTGT-GGGGTCTGAGGGTGACTTGGCACTGGCCTACAAGTGCCCCTTGATGCCAGCAGTCTGGGTGCCATGGATGGCtgtgggaggcagacaggctcctgggtggaaggAAGTGGGTCCCCAGTGAAGCCCCACCTGCAGGCTAGGCTGCCAGTCCTGCAGACTGGAGGGGAAACTCAGGGTGCTTTTTCCTGGGcccacccatggctgcccatggaccaatggGCATACACTTCCTTCCCTCTGATGTCCATAAAAGCCTAGGACTCAGCCAGAACAGGGCAGAAGACAGAGGAGGGAAGACtagctgcagaaaggagctaccctctctgctgatagCTGGAGACAATGGGAGGGCCAGCT-------------
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36173859 434 +  58131712 acatgccagccccctgccacctcagcctcctctggactttgggcactgaggagcagcagcatgggaggggaagctga-ggggtctgaggttgacttgccactggcctacaagtgccccttgatgccagcagtctgggtgccatggatggccgtgggaggcagacaggctgctgggtggaaggaggtgggtccccagtgaagccccacctgcaggctaggctgccagtcctgcagactggaggggaaactcagggtgctttttcctgggcccacccatggctgcccatggaccaatgggcatacacttccttccctctgatgtccataaaagactaggactcagccagaacagggcagaagacagaggagggaagactagctgcagaaaggagctaccttctctgctgatagctggagacaatgggagggccagct-------------
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107981745 437 - 132174527 acatgccagcctcctggtacctcaaccacctctggattttgggcactgagaagcagaagtgtgggaggggaagctgaggggatctgagggtgcctgggcactggcctgcaggtgccccttgatgccagcagcctgggtggtatggatggacctgggaggcagacaggctcctgggtggaagtgggtgggt-cccagtaaaatttctgcttcaggct--------agtcctgcagactagaggggaaattcatggtgctttttccttggcccacccatggctgcccatggctcaatggacacacatgtcctcccctctgatatccat-aaagcccaggattcagctggagcatggcagaagacagaggagggaagactagctgcagagaggagctaccctctctgctgatagctggagagaatg-gagggccaggtgcagagaggaact
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9113086 1408 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941   0 -  40214260 C

a score=1560.000000
s hg38.chr14_KI270725v1_random    143956 1 +    172810 g
s panTro4.chrUn_GL393505          283398 1 +   1195001 a
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5807502 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53528837 1 + 121039945 a
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145868142 1 - 170124641 a
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147858496 1 - 171882078 g
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140785348 1 - 162156779 A
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36174293 1 +  58131712 a
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107982182 1 - 132174527 a
i calJac3.chr10                C 0 C 0
s saiBol1.JH378136              10772377 1 +  21366645 g
i saiBol1.JH378136             N 0 I 330
e panPan1.JH650621               9113086 1408 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941 0 -  40214260 C

a score=912545.000000
s hg38.chr14_KI270725v1_random    143957 315 +    172810 ttttctctgctgaatgcttcagagacctgcagagatgtctgggaactaccagctgcagacaggagcaaccctctccagggtttccctttctcctgagagctgaacacttgacagaacaacct--agggaggagctacccactatgggtctcctctgagctgttctaacacttaataaagctcctctcctttaacccttcacttgtctacctacaccatttttcctggaagcaggacaagaactcgggcaaagatgccaccaaccac---agtttccaaaccagaaaatcgacaccccaaagattccgtaacaattgcaca
s panTro4.chrUn_GL393505          283399 314 +   1195001 ctttctctgctgaatgcttcagagacctgcagagttgtctgggaactactagctgcagacaggagcaaccttctccagggtttccctttctgctgagagctgaacacttgacagaacaacct--atagaggagctacccactatgggtctcctctgagctgttctaacacttaataaaactcctctcctttaacccttcacttgtctacctacaccattcttc-tggatgcaggacaagaactcgggcaaagatgccaccaaccac---agttttccaaccagaaaatcgacaccccaaagattctgtaacaattgcacc
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5807503 315 +  72422247 ctttctctgctgaatgcttcagagacctgcagagatgtctgggaactaccagctgcagacaggagcaaccctctccagggcttccctttctgctgagagctgaacacttgacagaacaacct--agagaggagctacccactatgggtcttccctgagctgttctaacacttaataaagctcctctcctttaacccttcacttgtctacctacaccattcttccttgatgcaggacaagaactctggcaaagatgccaccaatcac---agttttccaaccagaaaatcgacaccccaaagattccataacaattacacc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53528838 319 + 121039945 ctttctctgctgaatgcttcagaggcctgcagagatgtctgggaactactagctgcagacagaagcaaccctctccagggcttccctttctgctgagagctgaacactcgacagaacaacctacagagaggagctgcccactatgggtctcctcggagctgttctaacacttaacaaagctcctctcctttcacccttcacttgtctacctacaccattcttcctggatgcaggacaagaactcaggcaaagatgccaccaaccac-agaggtttccaaccagaaaatcgacaccccaaagattctgtaacaattgcacc
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145868143 320 - 170124641 ctttttctgctgaatgcttcagagagctacagagatgtctgggaactatcagctacagagaggagcaaccctctccagggtttccctttctgctgagagctgaacacttggcaaaacaacctacagagaggagctacccactatgggtctcctctaagctgttctaacacttaataaagctcctctctattcacccttcacttgtctacctacaccattcttcttggatgcaggacaagaactcgggcaaagatgccacgaaccacaagaggtttccaaccagaaaatcaacaccccaaagattctgtaacaattgcacc
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147858497 320 - 171882078 ctttctctgctgaatgcttcagagagctacagagatgtctgggaactatcagctacagagaggagcaaccctctccagggtttccctttctgctgagagctgaacacttggcaaaacaacctacagagaggagctacccactatgggtctcctctaagctgttctaacacttaataaagctcctctctattcacccttcacttgtctacctacaccattcttcttggatgcaggacaagaactcgggcaaagatgccacgaaccacaagaggtttccaaccagaaaatcgacaccccaaagattctgtaacaattgcacc
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140785349 320 - 162156779 CTTTCTCTGCTGAATGCTTCAGAGAGCTACAGAGATGTCTGGGAACTATCAGCTACAGAGAGGAGCAACCCTCTCCAGGGTTTCCctttctgctgagagctgaacacttgGCAAAACAacctacagagaggagctacccactatGGGTCTCCTCTAAGCTGTTCTAACACTTAATAAAGCTCCTCTCTATTCACCCTTCACTTGTCTACCTACACCATTCTTCTtagatgcaggacaagaactcgggcAAAGATGCCACGAACCACAAGAGGTTTCCAACCAGAAAATCGACACCCCAAAGATTCTGTaacaattgcacc
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36174294 320 +  58131712 ctttctctgctgaatgcttcagagagctacagagatgtctgggaactgccagctacagagaggagcaaccctcgccagggtttcgctttctgctgagagctgaacacttggcaaaacaacctacagagaggagctacccactatgggtctcctctaagctgttctaacacttaataaagctcctctctattcacccttcacttgtctccctacaccattcttcttggatgcaggacaagaactcgggcaaagatgccacgaaccacaagaggtttccaaccagaaaatcaacaccccaaagattctgtaacaattgcacc
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107982183 317 - 132174527 ccctctctgctaagtgcttcagagacctgcag-gatgtctggggactaccagctgcagagaggagcaaccctctccagggcttccttttctgc-gagagctgaacacctgacaggatgacctacagaaaggagctacccactatgggtctcatttgagctgttctaacacttaatatagctcctctttattccttattaacttttctgcctactccattcttcttggatgcaggataagagctcaggcaaaggctccccctgccac-ataggtttccagctagaatattgacatcccaaagattccgtaacaATTGCCCA
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9113086 1408 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941   0 -  40214260 C
e saiBol1.JH378136              10772378 330 +  21366645 I

a score=6652.000000
s hg38.chr14_KI270725v1_random    144272 2 +    172810 ac
s panTro4.chrUn_GL393505          283713 2 +   1195001 ac
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5807818 2 +  72422247 ac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53529157 2 + 121039945 ac
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145868463 2 - 170124641 ac
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147858817 2 - 171882078 ac
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140785669 2 - 162156779 ac
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36174614 2 +  58131712 ac
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107982500 2 - 132174527 GC
i calJac3.chr10                C 0 I 5
s saiBol1.JH378136              10772708 2 +  21366645 GC
i saiBol1.JH378136             I 330 I 12422
e panPan1.JH650621               9113086 1408 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941 0 -  40214260 C

a score=283140.000000
s hg38.chr14_KI270725v1_random    144274 117 +    172810 tgcactccagcctaggtgacagagtgagaccctgactcttaaaaaaaaagaaaaaaaaaaaagaaaTTATCCACAATTTATTAGAT-AAGACTGTTAATAGCTTCTAATTGTGATACC
s panTro4.chrUn_GL393505          283715 116 +   1195001 tgcactccagcctaggtgacagagtgagaccctgactcttaaaaaaaga-aaaaaaaaaaaaGGAATTATCCACAACTTATTAGAT-AAGACTGCTAATAGCTTCTAATTGCAATACT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5807820 111 +  72422247 tgcactccagcctaggtggcagagtgagaccctgacttttaaaaaaaga------aaaaaaaGGAATTATCCACAAGTTATTAGAT-AAGACTGCTAATAGCTTCTAATTGTGATACC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53529159 112 + 121039945 tgcactccagcctaggtgacagagtgagaccctgactcttaaaaaaaga------aaaaaaaGGAATTATCCACAAGTTATTAGATAAAGACTGCTAATAGCTTATAATTGTGATACC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145868465 106 - 170124641 tgcactccagcctaggtgaca----gagaccctgactcttaaaaaaaaaga----aaaaaaaGAAATTATCCACAAGTTATTA----AAGACTGCTAATAGCTTATAATTGTGATACC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147858819 106 - 171882078 tgcactccagcctaggtgaca----gagaccctgactcttaaaaaaaaaga----aaaaaaaGAAATTATCCACAAGTTATTA----AAGACTGCTAATAGCTTAAAATTGTGATACC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140785671 106 - 162156779 tgcactccagcctaggtgaca----gagaccctgactcttaaaaaaaaaga----aaaaaaagaaattatccacaAGTTATTA----AAGACTGCTAATAGCTTATAATTGTGATACC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36174616 106 +  58131712 tgcactccagcctaggtgaca----gagaccctgactcttaaaaaaaaaga----aaaaaaaGAAATTATCCACAAGCTATTA----AAGACTGCTAATAGCTTATAATTGTGATCCC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107982507 114 - 132174527 tgtactctagcatgggtgacagactgagaccctgactcttaaaaaaTAATAATAATAATGAATGAATTATCCACAAGCTATTA----AAAACTGCTAATAACTTATAATTGTGCTACC
i calJac3.chr10                I 5 C 0
e panPan1.JH650621               9113086 1408 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26792941   0 -  40214260 C
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=1279127.000000
s hg38.chr14_KI270725v1_random    144391 387 +    172810 TTCCCGTTTGAAATGGAAGGCATGGAAGTTAACACCAGGTCAGTTTTCCCAAAGTTATAACCCTGCTT---TTGGCCTCTTTCAGCTCCAGTCAGACATTAGCAATGCT--CAGTTACCTTCAATATTAAGCTGGTCCTGACATGAAACTGGCAGCATTTGAGAACACTGACCCAGACTTGAAGGTAGATCTGGAATTAGGATTGCTGCTTTAAGCCCAGTATCAAGGTATACAATGAACCATGCATTTCTCATAAGCCAAATTTAGTGGA-TTTTTTCCTA-TAATTCTGAGGATAACTTTGCCTTGATTATATATTAAAACAATTCATTTGCTGTATCTTCATTACTGTCCCAAATGTTTTGGGTTGACATACTGATGTTAGCTAGTGGTTT
s panTro4.chrUn_GL393505          283831 386 +   1195001 TTCCCATTTGAAATGGAAGGTAAGGAAGTTAACACCAGGTCAGTTTTCCCAAAGTTATAACCCTGCTT---TTGGCCTCTTTCAGCTCCAGTCAGACATT-GCAATGCT--CAGTTACCTTCAATATTAAGCCAGTCCTTACATGAAACTGGCAGCATTTGAGAACACTGACCCAGACTTGAAGGTAGATCTGGAATTAGGTTTGCTGCTTTAAGCCCAGTATCAAGGTATACAATGAATCACGAATTTCTCATAAACCAAATTTAGTGGA-TTTTTTCCTA-TAATTCTGATGATAACTTTGCCTTGATTATATATTAAAACAATTCCTTTGCTGTATCTTCATTACTGTCCCAAATGTTTTGGGTTGACATACTGATGTTAGCTAGTGGTTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5807931 388 +  72422247 TTCACGTTTGAAATGGAAGGGATGGAAGTTGACACCAGGTCAGTTTTCCCAAAGTTATAACCCTGCTT---TTGGCCTCTTTCAGCTCCAGTCAGACATTAGCAATGCT--CAGTTACCTTCAATATTAAGCCAGTCCTGACATGAAACTGGCAGAATTGCAGAACGCTGACCCAGACTTGAAGGTAGATCTGGAATTAGGATTGCTGCTTTAAGCCCAGTATCAAGGTATATAATGAATCATGAATTTGTCATAAACCAAATTCAGTGGATTTTTTTCCTA-TAATTCTGATGATAACTTTGCCTTGATTATATATTAAAACAATTCATTTGCTGTATCTTCGTTACTGTCCCAAATGTTTTGGGTTGACATACCGATGTTAGCTAGTGGTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53529271 388 + 121039945 TTCCTATTTGAAATGAACGGGATGGAAGTTAACACCAGATCAGTTTTCTCAAAGTTATAACCCTGCTT---TTGACCTCTTTCAGCTTCAGTCAGACATTAGCAATGCT--CAGTTACCTTCAATATTAAGCCAGTCCTGACATGAAACTGGCAGCATTTGAGAACACTGACTCAGACTTGAAGGTAGATCTGGAATTGGGATTGCTGCTTTAAGCCCAGTATCAAGGTATACAATGAATCATGAATTTCTCATAAACCAAATTTAGTGGAGTTTTCTTCTA-TAATTCTGATGATAACTTTGCCTTGATTATATATTGAAACAATTCATTTGCTGTATCTTCATTACTGTCCCAAATGTTTTGGGTTGACATACTGATGTTAGCTAGTGGTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145868571 388 - 170124641 TTCCCATTTGAAATGAAAGGGATGGAGGTTGACACCAGGTCAGTTTTCCCAAAGTCATAACCCTGATT---TTTACCTCTTTCAGCTTCAGTCAGATATTAGCAATGCT--CAGTTACCTTCAATATTAAGCCAGTCCTGACATGAAACTGGCAGCATTTGAGAACTCTGACCCAGACTTGAAGGTAGATCTAGAATTAGGATTGCTGCTTTAAGCCCAGTATCAAGGTATACAATGAATCATGAATTTCTCATAAACTAAATTTAGTGGATTTTTTTCCTA-TAATTCTGATGATAACTTTGTCTTGATTATATATTAAAACAACTCATTTGCGGTATCTTCATTACTGTCCCAAATGTTTTGGGTTGACATGCTGATGTTAGCTAGTGGTTT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147858925 388 - 171882078 TTCCCATTTGAAATGAAAGGGATGGAGGTTGACACCAGGTCAGTTTTCCCAAAGTCATAACCCTGATT---TTTACCTCTTTCAGCTTCAGTCAGATATTAGCAATGCT--CAGTTACCTTCAATATTAAGCCAGTCCTGACATGAAACTGGCAGCATTTGAGAACTCTGACCCAGACTTGAAGGTAGATCTAGAATTAGGATTGCTGCTTTAAGCCCAGTATCAAGGTATACAATGAATCATGAATTTCTCATAAACTAAATTTAGTGGATTTTTTTCCTA-TAATTCTGATGATAACTTTGTCTTGATTATATATTAAAACAACTCATTTGCGGTATCTTCATTACTGTCCCAAATGTTTTGGGTTGACATGCTGATGTTAGCTAGTGGTTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140785777 388 - 162156779 TTCCCATTTGAAATGAAAGGGATGGAGGTTGACACCAGGTCAGTTTTCCCAAAGTTATAATCCTGATT---TTTACCTCTTTCAGCTTCAGTCAGATATTAGCAATGCT--CAGTTACCTTCAATATTAAGCCAGTCCTGACATGAAACTGGCAGCATTTGAGAACTCTGACCCAGACTTGAAGGTAGATCTAGAATTAGGATTGCTGCTTTAAGCCCAGTATCAAGGTATACAATGAATCATGAATTTCTCATAAACTAAATTTagtggatttttttccta-taattatGATGATAACTTTGTCTtgattatatattaaaacaattcaTTTGCGGTATCTTCATTACTGTCCCAAATGTTTTGGGTTGACATGCTGATGTTAGCTAGTGGTTT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36174722 388 +  58131712 TTCCCATTTGAAATGAAAGGGATGGAGGTTGACACCAGGTCAGTTTTCCCAAAGTTATAACCCTGATT---TTTACCTCTTTCAGCTTCAGTCAGATATTAGCAATGCT--CAGTTACCTTCAATATTAAGCCAGTCCTGACATGAAACTGGCAGCATTTCAGAACTCTGACCCAGACTTGAAGGTAGATCTGGAATTAGGATTGCTGTTTTAAGCCCAGTATCAAGGTATACAATGAATCATGAATTTCTCATAAACTAAATTTAGTGGATTTTTTTCCTA-TAATTCTGATGATGACTTTGTCTTGATTATATATTAAAACAACTCATTTGCAGTATCTTCATTACTGTCCCAAATGTTTTGGGTTGACATGCTGACGTTAGCTAGTGGTTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107982621 387 - 132174527 TTCCCATTTGAAATGAAAGGGATGGATGTTAACCCTGTGTAAATTTTCCCGAAGTTATAACCCTGCTT---TTGACCTCTTTCAGATTCAGACAGACATTAGCACTGCTCACAGTTACCTTCAATATTAAGCCAGTTCTGAAATGAAACTGGCAGCATTTGAAAACACTGATCCAGACTTGAAGGTAGATCTGGAATTAGGATTGCCGCTTTAAGCCCAGTATCAAGGTACACAATAAATCATGAATTTCTCATCAACCAAACTTAGTGAA--TTTTTCCTA-TAATTCTGATTATAACTTTGCCTTGATTGCACATTAATACAACT-ATTTGCTGTATCTTCTTTATTGTCCCAAATGTTTTGGGTTGACATCCTGATGTTACCTAGTAGTTT
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26792941 348 -  40214260 TTCCCATTTGAAAT----AGGAAGGATATTAACTCCAGGTCAGCTTTTCCAAGAATAGAATCCTGCTTCTCCTGGCTTATTTCTGCTCCAGGCAATTATCTGTA-TGCT--AGACTACCTTTATTACTAAGCCAGTCCCTATCAAAGGCTAGAAGCATTTGAGAAGATGGAAGCACACTTG-AGGCAGTTCTAGGATTAGGATT-CTGCTTTACATCCAGTATCAAGGTACACAATGGATCCTAGATTTCTCATGAACCAAGTCTAGTGAG---TTTTCCTATTAGTTATGGTTAT-ATTTTGTCTTGATTACATGTTAACACAATTCCCCTGCTGGATCTACATTACTGTACCAAATGTT---------------------------------
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9113086 1408 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=4095.000000
s hg38.chr14_KI270725v1_random    144778 1 +    172810 T
s panTro4.chrUn_GL393505          284217 1 +   1195001 T
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9114494 1 -  12672142 T
i panPan1.JH650621             I 1408 I 1258
s ponAbe2.chrUn                  5808319 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53529659 1 + 121039945 T
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145868959 1 - 170124641 T
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147859313 1 - 171882078 T
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140786165 1 - 162156779 T
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36175110 1 +  58131712 T
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107983008 1 - 132174527 T
i calJac3.chr10                C 0 C 0
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26793289 0 -  40214260 C
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=554655.000000
s hg38.chr14_KI270725v1_random    144779 200 +    172810 GGTCTCAAGTTTCAGTAGCTGCTCCAATGTAAAATGATCACACATAAATCTTAGGTTTTTACTCATA---TGATACCTTGTCTGATACTATCTTTATCTATCAAATAAAGGGTTTAGTATTTtcttagtcaatgtgggctgctataacggaaaacacagattgagcgagtaaaacaataaacatttgtttttcacagatccgt
s panTro4.chrUn_GL393505          284218 200 +   1195001 GGTCTCAAGTTTCAGTAGCTGCTCTAATGTAAAATGATCACACATAAATCTTAGGTTTTTACTCACA---TGATACCTTGCTTGATACTGTCTTCATCTATCAAATAAAGGGTTTAGTATTTtcttagtcaatgtgggctgctataacagaaaacacagattgagtgactaaaacaataaacatttgtttttcacagatctgt
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5808320 200 +  72422247 GGTCTCAACTTTCAGTAGCTGCTCCAATGTAAAATGATCACACATAAATCTTAGGTTTTTACTCATA---TGATACCTTGTCTGATACTATCTTCATCTATCAAATAAAGGGTTTAGTATTTtcttggtcaatgtgggcagctataacagaaaacacagattgagtggctaaaacaacaaacatttgtttttcacagctctgt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53529660 200 + 121039945 GGTCTCAAGTTTCAGTAGCTGCTCCAATGTAAAATGATCGCACATAAATCTTAGGCTTTTCCTCATA---TGATACCTTGTCTGATACTATCTTCATCTATCAAATAAAGGGTTTAGTACTTtcttagtcagtgtgggctgctataacagaaaacatagattgagtggctaaaacaacaaacatttggttttcacagatctgt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145868960 200 - 170124641 GGTCTCAAGTTTCAGTAGCTGCTCCAATGTAAAATGATCACACATAAATCTTAGGTTTTTGCTCATA---TGATACCTTGTCTGATACTATCTTCATCTATCAAATAAAGGGTTGAGTATTTtcttagtcaatgtgggctgctataacagaaaaaatagattccgtggctaaaacaagaaacatttgtttttcaacgatctgt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147859314 200 - 171882078 GGTCTCAAGTTTCAGTAGCTGCTCCAATGTAAAATGATCACACATAAATCTTAGGTTTTTGCTCATA---TGATACCTTGTCTGATACTATCTTCATCTATCAAATAAAGGGTTGAGTATTTtcttagtcaatgtgggctgctataacagaaaaaatagattccgtggctaaaacaagaaacatttgtttttcaccaatctgt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140786166 200 - 162156779 GGTCTCAAGTTTCAGTCGCTGCTCCAATGTAAAATGATCACACATAAATCTTAGGTTTTTGCTCATA---TGATACTTTGTCTGATACTATCTTCATCTATCAAATAAAGGGTTGAGTATTTTCTTAGTCAAtgtgggctgctataacagaaaaaatagattCCGTGGCTAAAAcaagaaacatttgtttttcacCGATCTGT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36175111 199 +  58131712 GGTCTCAAGTTTCAGTAGCTGCTCCAATGTAAAATGATCACACATAAATCTTAGG-TTTTGCTCATA---TGATACCTTGTCTGATACTGTCTTCATCTATCAAATAAAGGGTTGAGTATTTtcttagtccatgtgggctgctataacagaaaaaatagattccgtggctaaaacaagaaacatttgtttttcaccgatctgt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107983009 195 - 132174527 AGTCTCAAGTTTCAGTAGCTGCTCCAAGGCAAGATGATCACCCATAAG-CTTAGGTTTTTACTCATA---TGATACCTTGTCTGATACTATCATTATCTATCAAATAAAAAGTTGAGTATTTtcttagtcagtgagggctgttagaat----accatagattcagtggctacaacagcaaacatttatttttcacagataggt
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26793289  98 -  40214260 -------------------------------------------------------TTTTTATTTATATGCTGATAATGTGCCTAGTACTTTTT-----------------GGTTTCATATTCTAGTAGC---TGGAGTCTGCT-------------------------TTAGAACAAAA-----TGATCATTCACATGACCGT
i canFam3.chr30                C 0 I 37
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=206205.000000
s hg38.chr14_KI270725v1_random    144979 69 +    172810 aggctgtaaatctgaaatcagggagtcagcatggttgggttctcggtgaaggctgtcttcctggtttac
s panTro4.chrUn_GL393505          284418 68 +   1195001 aggc-gtaaatctgaaatcagggagtcagcatggttgggttcttggtgaaggctgtcttcctagtttac
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5808520 69 +  72422247 aggctgtaaatctgaaatcagggagtcagcctggttgggttcttggtgaaggctgtcttcttggtttac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53529860 69 + 121039945 aggctgtaaatctgaaatcagggagtcaacatggttgggttctgggtgaaggctgtctccctggtttac
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145869160 69 - 170124641 aagctgcaaatctgaaatcagggagtcaacatggttgggttcttggtgaaggctgtcttcctggtttac
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147859514 69 - 171882078 aagctgcaaatctgaaatcagggagtcaacatggttgggttcttggtgaaggctgtcttcctggtttac
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140786366 69 - 162156779 AGGCTGCAAATCTGAAATAAGGGAGTCAACATGGTTGGGTTCTTGGTGAAGGCTGtcttcctggtttac
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36175310 69 +  58131712 aggctgtaaatctgaaatcagggagtcaacatggttgggttcttggtgaaggctgtcttcctgctttac
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107983204 69 - 132174527 agagtagaaatctgagactagggagtcaacatggttgggttcttggtgaaagctgtcttcctggtttac
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58107370 815 - 182113224 I
e canFam3.chr30                 26793387 37 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=574508.000000
s hg38.chr14_KI270725v1_random    145048 201 +    172810 agatggctgtcttatttta--tcctcacatggaggagagaaaaatct--ctcttgtatctctt-tctagaagggcactactttcctttggtgagggtttcatcttcatgacctaattacctcccaaaggtttacctcctaataccaatacattgagagttaggatttcatcatatgaatttgagggATTT------------------GCAG---------TCCATAATAACT
s panTro4.chrUn_GL393505          284486 194 +   1195001 agatggctgtcttatttta--tcctcacttggaggagagaaaaatct--ctcttgtatctctt-cttagaagggcactactttccttcgatgagagtttcatcttcatgacctaattacctcccaaaggtttacctcctaacaccaacacattgagagttaggatttcaacataggaatttgagggatt----------------------------------caaaATAATT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5808589 201 +  72422247 agatggctgtcttatttta--tcctcacatggaggagagaaaaatct--ctcttgtatctctt-cttagaagggcactactttcctttgatgagggtttcatcttcatgacctaattacctcccaaaggtttacctcctaataccaatacattgagagttaggatttcaacatatgaatttgagggATTT------------------GCAG---------TTCATAATAACT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53529929 200 + 121039945 tgatggctgtcttatttta--tcctcacatggaggagagaaaaatct--ctcttgtatctctt-cttag-agggcactactttcctctgatgagggcttcatcttcatgacctaattacctcccaaaggattacctcctaataccaacacattgagagttaggatttcaacatatgaatttgagggATTT------------------GCGG---------TTCATAATAACT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145869229 201 - 170124641 agatggctgtcatatttta--tcctcacatggaggagagaaaaatct--ctcttgtgtctctt-cctagaagggcactactttcctttgataagggcttcatcttcatgacctaattacctcctaaaggattacttcctaataccaacacattgagagttaggattttaccatatgaatttgagggATTT------------------GCAG---------TTCATAATAACT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147859583 201 - 171882078 agatggctgtcatatttta--tcctcacatggaggagagaaaaatct--ctcttgtgtctctt-cctagaagggcactactttcctttgataagggcttcatcttcatgacctaattacctcctaaaggattacttcctaataccaacacattgagagttaggattttaccatatgaatttgagggATTT------------------GCAG---------TTCATAATAACT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140786435 201 - 162156779 agatggcTGTCATATTTTA--TCCTCACATGGAGGAGAGAAAAATCT--CTCTTGTGTCTCTC-CTTAGAAGGGCACTACTTTCCTTTGATGAGGGCTTCatcttcatgacctaattacctcctaaaggaTTACTTCCTAATACCAACACATTGagagttaggattttaacatatgaatttgagggatTT------------------GCAG---------TTCATAATAACT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36175379 201 +  58131712 agatggctgtcatatttta--tcctcacatggaggagagaaaaatct--ctcttgtgtctctt-cttagaagggcactactttcctttgatgagggcttcatcttcatgacctaattacctcctaaaggattacttcctaataccaacacattgagagttaggattttaacatatgaatttgagggATTT------------------GCGG---------TTCATAATAACT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107983273 202 - 132174527 agctggctgtcttactgta--ttcttacatgatggagaaaaaaa--t--cccttgtgtctctt-cttagaagggcactactttcctttgatgagggcttcatcttcacaacctgattacctccc---------------aaTACCAACACATTAAGAGTTAGGATTTCAATGTATAAATCTGAGGGATTTTCAGTGGGCACACTATAATCAG---------TTCAAAATAAGT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58108185 187 - 182113224 AGATGGTTACATTGCTTTATTTCTTCACATGGCTAAGAAACAATCCTGACTCTTTTGTTTCCTACTTACAAACATATT------------TGAGGGTCCTGTCCTCATCAACAAATTATCCACTGG-------------GAAACTACCACCTTGAGACCTGGGGTTTCTACATAAGA---TAAGGACTAG------------------GCAGAAGCATTCAATCCACACGTTT
i mm10.chr2                    I 815 C 0
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e canFam3.chr30                 26793387  37 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=1444064.000000
s hg38.chr14_KI270725v1_random    145249 380 +    172810 ACCAATGTCAACTCAGTTCAAGCTTGAATTTGTTTTGCTTTGGGTGACAAATCTCTAACTAATTTGAATTCATCTTTCCCCAGTCTGGTTCAGTGTTGTCTTCTTTCTCCTTCACCACCAACAGTTAGCAAGATGTCAGTTTTACTTGAGGCT-AAGTATGTTTTAGTTATCACAATAGAGAACCCTGTAAGCTATATCTT-AGTTTCCCCTTTCATAATATTTTTCATTATGGAAAAAATACATTCTAAACATTGTTCCTATTCTAAGAAACTTGGCTGCATCTTTGCAACAAAAATAATGTGGACATTTACCAAATACAGCTGTAGAGAA---AGGTAAAATCATTGCTCTGAATTATTCATAAAATCACAGAAATTAGGGAC
s panTro4.chrUn_GL393505          284680 379 +   1195001 ATCAATGTCAACTCAGTTCAAGCTTGAATTTGTTTTGCTTTGGGTGACAAATCTCTAAATAATTGGAATTCATCTTTCCCCAGTCTGGTTCAGTGTTGTCTTCTT-CTCCTTCACCACCAACAGTTAGCAAGATGTCAGTTTTACTTGAGGCT-AAGTCTGTTTTAGTTATCACAATAGAGATCCCTGTAAGCTATATCTT-AGTTTCCCCTTTCATAATATTTTTCATTATGGAAAAAATACATTCTAAACATTGTTCCTATTGTAAGAAACTTGGCTGCATCTTTGCAACAAAAATAATGTGGACATTTGCCAAATACAGTTGTAGAGAA---AGGTAAAATCATTGATCTGAATTATTCATAAAATCACAGAAATTAGGGAC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5808790 380 +  72422247 ATCAATGTCAACTCAGTTCAAGCTTGAATTTGTTTTGCTTTGGGTGACAAATCTCTAACTAATTTGAATTCATCTTTCCCCAGTCTGGTTCAATGTTGTCTTCTTTCTCCTTCACCACCAACAGTTAGCAAGATGTCAGTTTTACTTGAGGCT-AAGTCTGTTTTAGTTATCACAATACAGAACCCTGTAAGCTATATCTT-AGTTGCCCCTTTCATAATATTTTTCATTATGGAAAAAATACATTCTAAACATTGTTCCTATTCTAAGAAACTTGGCTGCATCTTTGCAACAAAAATAATGCGGACATTTGCCAAATAAAGCTGTAGAGAA---AGGTAAAATCATTGCTCTGAATTATTCATAAAATCACAGGAATTAGGGAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53530129 380 + 121039945 ATCGATGTCAACTCAGTTCAAGCTTGAATTTGTTTTGCTTTGGGTGACAAATCTGTAACTAATTTGAATTCATCTTTCCCCAGTCTGGCTCAATGTTGCCTTCTTTCTCCTTCACCACCAACAGTTATCAAGATGTCAGTTTTACTTGAGGCT-AAGTCTGTTTTAGTTATCACAATAGAGAACCCTGTAAGCTATGTCTT-AGTTGCCCCTTTCATAATATTTTTCGTTATGGAAAAAATGCATTCTAAACATTGTTCCTATTCTAAGAAACTTGGCTACATCTTTGCAACAAAAATGATGTGGAAATTTGCCAAATACAGCTGTAGAGAA---AGGTAAAATCAGTGCTCTGAATTATTCTTAAAATCACAGAAATTAGGGAC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145869430 380 - 170124641 ATAAATGTCAACTCGGTTCAAGCTTGAATTT-TTTTGCTTTGGGTGACAAATCTCTAACTAATTTGAATTCATCTTTCCCCAGTCTGGTTCAATGTTGTCTTCTTTCTCCTTCACCACCAACAGTTATCAAGATGTCAGTTTTACTTGAGGCT-AAGTCTGTTTTAGTTATCACAATAGAGAACCCTGTAAGCTATATCTTAAGTTGCCCCTTTCATAATATTTTCCATTATGGAAAAAATACACTGTAAACATTGTTCCTACTCTAAGAAACTTGGCTACATCTTTGCAACAAAAATGATGTGGAAATTTGCCAAATACAGCTGTAGAGAA---AGGTAAAATCATTGCTCTGAATTATTCATAAAATCACAGAAATTAGGGAC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147859784 380 - 171882078 ATAAATGTCAACTCGGTTCAAGCTTGAATTT-TTTTGCTTTGGGTGACAAATCTCTAACTAATTTGAATTCATCTTTCCCCAGTCTGGTTCAATGTTGTCTTCTTTCTCCTTCACCACCAACAGTTATCAAGATGTCAGTTTTACTTGAGGCT-AAGTCTGTTTTAGTTATCACAATAGAGAACCCTGTAAGCTATATCTTAAGTTGCCCCTTTCATAATATTTTCCATTATGGAAAAAATACACTGTAAACATTGTTCCTACTCTAAGAAACTTGGCTACATCTTTGCAACAAAAATGATGTGGAAATTTGCCAAATACAGCTGTAGAGAA---AGGTAAAATCATTGCTCTGAATTATTCATAAAATCACAGAAATTAGGGAC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140786636 379 - 162156779 ATAAATGTCAACTCGGTTCAAGCTTGAAttt-ttttGCTTTGGGTGACAAATCTCTAACTAATTTGAATTCATCTTTCCCCAGTCTGGTTCAATGttgtcttctttctccttcaccaCCAACAGTTATCAAGATGTCAGTTTTACTTGAGGCT-AAGTCTGTTTTAGTTATCACAATAGAGAACCCTGTAAGCTATATCTT-AGCTGCCCCTTTCATAATATTTTCCATTATGGAAAAAATACATTCTAAACATTGTTCCTACTCTAAGAAACTTGGCTGCATCTTTGCAACAAAAATGATGTGGAAATTTGCCAAATACAGCTGTAGAGAA---AGGTAAAATCATTGCTCTGAATTATTCATAAAATCACAGAAATTAGGGAC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36175580 379 +  58131712 ATAAATGTCAACTCAGTTCAAGCTTGAATTT-TTTTGCTTTGGGTGACAAATCTCTAACTAATTTGAATTCATCTTTCCCCAGTCTGGTTCAATGTTGTCTTCTTTCTCCTTCACCACCAACAGTTATCAAGATGTCAGTTTTACTTGAAGCT-AAGTCTGTTTTAGTTATCACAATAGAGAACCCTGTAAGCTATATCTT-AGTTGCCCCTTTCATAATGTTTTCCATTATGGAAAAAATACATTCTAAACATTGTTCCTATTCTAAGAAACTTGGCTGCATCTTTGCAACAAAAATGATGTGGAAATTTGCCAAATACAGCTGTAGAGAA---AGGTAAAATCATTGCCCTGAATTATTCATAAAATCACAGAAATTAGGGAC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107983475 378 - 132174527 ATCAATGTCAACTCAGTTCAAGCTTGAATTTGTTTTGCTTTGGGTGACAAATCTCTAACTAATTTGAATTCATCTTTCCCCAGTATGGTTCAATGTTGTCTTCTTTCTCTTTCACCACCAACAGTTAACAAGATGTCA-TTTTCCTTTAGGCT-AAGTCTGTTTTAGTTATCACAATAGAGAACTCTGTAAGCTATATCTT-AGTTGCCCCTTTCATAATATTTTCCATTACAGAAAAAAGGCATTCTAAACATTGTTCCTATTCTAAGAAA-TTGGCTGTGTCTTTGCAACAAAAATGAAGTGGAAATTTGCCAAATACAGCTGTAGAGAA---AGGTAAAATCATTGCTCTGAATTATTCATAAAATCACAGAAATTAGGGGC
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58108372 357 - 182113224 AGTAATGCCATTTCAG-TCTAGCTAAGTTTT-ATTTTCTCTGAG--------------CTGAATT---TTTGTCCTCCATCAGTTTGGGCTAATGCTGCCTT-TTTCCGTTTTGTTTCCAGTAGATACAGAGATGTTAGTTCC-CTCAAGGTT-AACTCT-CTTCAGCTATCACCACTAAGAACTCAGTAAAGCACATCTT-AGCTTCCCTTTTGAGTGTAGTTTTCATTATGGATAATATATAT--GAAGCATTGCTCCCATTCTGGACATGTTGACCATGTTTTTGTGACAAGAGTGAAATGGAAACTTGTGGCATGCTTCTGCAGAGAAATTAGGTAGCTCCA-TGCTCTGATTCCTTCAC-AAATCACTGACTCTGAGGAC
i mm10.chr2                    C 0 I 76
s canFam3.chr30                 26793424 382 -  40214260 ATTAACATCAGTTCCATTCAAGCTTGAATTTGTTTTGAT-TAAGTGATAGATCTATAACTTAATATAATTCACCTTTTCCCAGACTGGCTCAATGCTATCTTCTTTTTCTTATACCATTAACAGTTACTAAGACACGAGCTTTCCTTGAGGCTCAAATTCTTTTTAAGTTTCATAATTGATGATTCCATAAGCTATATCTT-TGTTGCCCTTTTCATAATATTTTTCACTGTGGA-AAAATACATTCTAAACATTATTCGTATTCTAAGAATCTCAGCTGTGTCTTTGTAACAAAAATGAAGTGGAAACTTGCCAAATGCTATGGTAGAGAAAGAAGGTAAAATCATTGCTCTCAATTATTCATAAAATCACAAATTTTAGGGAC
i canFam3.chr30                I 37 C 0
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=966024.000000
s hg38.chr14_KI270725v1_random    145629 280 +    172810 AAACACTAAATAAGAATGAATTATTCAGTGACCCGAAAC--AGATATTTTCTTTAGTTTCTCATGTAATTTGAAATGTACCGCAATTTACATCCTGAGTGTTATAAACATAT-GATGTTTCTCTTTTAGTGAAAAGCACCCATCAGAACTTGTTAAACAAATGAG------TTTTTTTCTCTTCCCATCTCTAAAAGCATTTTTGATACCTACACATCTACAAAT--------ATGTTTTAATAGACCTAAACTCTATATGATGTCATTT--------TCCCCTTGAGTACCAGAATATATATTT
s panTro4.chrUn_GL393505          285059 280 +   1195001 AAACACTAAATAAGAATGAATTATTCAGTGACCTGAAAC--AGATATTTTCTTTAGTTTCTCATGTAATTTGAAATATACTGCAATTTACATCCTCAGTGTTATAAACATAT-GATGTTTCTCTTTTAGTGAAAAGCACCCAACAGAACTTGTTAAACAAATGAG------TTTTTTTCTCTTCCCATCTCTAAAAGCATTTTTTATACCTACACATCTACAGGT--------ATGTTTTAATAGACCTAACCTCTCTATGATGTCATTT--------TCCCCTTGGGTACCAGAACATATATTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5809170 280 +  72422247 AAACACTAAATAAGGATGAATTATTCAGTGACCTGAAAC--AGATATTTTCTTTAGTTTCTCATGTAATTTGAAATGTACTGCAATTTACATCCTCAGTGTTATAAACGTAT-GATGTTTCCCTTTTAGTGAAAAGCACCCGACAGAACTTGTTAAACAAATGAG------TTTTTTTCTCTTCTCATATCTAAAAGCATTTTTTATAGCTACACATCTACAAAT--------ATGTTTTAATAGACCTAACCTCTCTATGATGTCATTT--------TCCCCTTGGGTACCAGAATATATATTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53530509 280 + 121039945 AAACACTAAATAAGGATGCATTATTCAGTGACCTGAAAC--AGATATTTTCTTTAGTTTCTCATGTAATTTGAAATGTACTGCAATTTACATCCTCACTGTTATAAACATAG-GATGTTTCTCTTTTAGTGAAAAGCACCCAACAGAACTTGTTAAACAAATGAG------TTTTTTTCTCTTCCCAGCTCTAAAAGCAATTTTTATACCGACGCATCTACAAAT--------ATGTTTTAATAGACCTAACCTCTCTATGATGTCATTT--------TCCCTCTGAACACCAGAATATATATTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145869810 282 - 170124641 AAACACTAACTAAGGATGCATTATTCAGTGACCTGAAAC--AGATATTTTCTTTAGTTTCTCACGTAATTTGAAATGTACTGCAATTTACATCATCACTGTTATAAACATAT-GATGTTTCTCTTTTAGTGAAAAGCACCCAACAAAACTCGTTAAACAAATGAG------TTTTGTTCTCTTCCCATCTCTAAAAGCAATTTTTATACTGACACATCTACAAATG------GATGTTTTAATACACCTAACCTCTCTATGATGTCATTT--------TCCCCCTGAATACCAGAATATATATTT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860164 282 - 171882078 AAACACTAACTAAGGATGCATTATTCAGTGACCTGAAAC--AGATATTTTCTTTAGTTTCTCACGTAATTTGAAATGTACTGCAATTTACATCATCACTGTTATAAACATAT-GATGTTTCTCTTTTAGTGAAAAGCACCCAACAAAACTCGTTAAACAAATGAG------TTTTGTTCTCTTCCCATCTCTAAAAGCAATTTTTATACTGACACATCTACAAATG------GATGTTTTAATACACCTAACCTCTCTATGATGTCATTT--------TCCCCCTGAATACCAGAATATATATTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787015 282 - 162156779 AAACACTAACTAAGGATGCATTATTCAGTGACCTGaaac--agatattttctttggtttctcaCGTAATTTGAAATATACTGCAATTTACATCATCACTGTTATAAACATAT-GATGTTTCTCTTTTAGTGAAAAGCACCCAACAAAACTCGTTAAACAAATGAG------TTTTGTTCTCTTCCCATCTCTAAAAGCAATTTTTATACTGACACATCTACAAATG------TATgttttaatacacctaacctctCTATGATGTCATTT--------TCCCCCTGAATACCAGAATATATATTT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36175959 279 +  58131712 AAACACGAAATAAGGATGCATTATTCAGTGACCTGAAAC--AGATATTTTCTTTAGTTTCTCATGTAATTTGAAATGTACTGCAATTTACATCATCACTGTTATAAACGT----ATGTTTCTCTTTTAGTGAAAAGCACCCAACAAAACTCGTTAAACAAATGAC------TTTTGTTCTCTTCCCATCTCTAAAAGCAATTTTTATACTGATACATCTACAAATG------TATGTTTTAATGCACCTAACCTCTCTATGATGTCATTT--------TCCCCCTGAATACCAGAATATATATTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107983853 296 - 132174527 AAACACTAAATAAGGATGCATTATTCAGTGACCTGAAAT--TGATATTTTCTTTAGTTTCTACTATAACTTTAAACGTACTGCAATTTACATCTTCACTGTTATAAACATAT-GATGTTTCTCTTTTAGTGAAAACCACCCAACAGAACTTGTTAAACAAATGAG------TTTTTCTTTCTTCCCATTTCCAAAAGCAATTTTTATACTGACACATCTACAAATGTATGTTTATGTTTTAATAGACCTAACCTCTCTATTATGTCATTTTCCCCCTATCCCCCTGAACACCAGGATATATATTG
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26793806 290 -  40214260 AAACAGTAAACAAGGAAGCATTACTCAATGGCCTAAAACTGAGAAATTTTCTTTAGTTTCTCATGTAATTTGAAATGTATTGCAATTCACACTCTCACTGTTATAAACATATGGATGGTTCTCTTTTAGTGAAAAGCACCCAATAGAA-TTGTTAGACAAATAAGATGAGCTTTTCTCCTCTTTCCATCTCTAAAAGCAATTTTCACACCAACATGTCTACAAATG------TATGTTTTAATAGACCTAATCTCTCCATGATGTCATTT--------TCCCCCAGACTACCAGAATATATATTT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108729  76 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=161542.000000
s hg38.chr14_KI270725v1_random    145909 40 +    172810 AGTCCTGTAGAATTATTTAGCTCTCAGGTGCTGAGTTACT
s panTro4.chrUn_GL393505          285339 40 +   1195001 AGTCCTGTAGAATTATTTAGCTCTCAGGTGCTGAGTTACT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5809450 40 +  72422247 AGCCCTGTAGAATTATTTAGCTCTCAAGTGCTGAGTTACT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53530789 40 + 121039945 AGTCCTGTAGAATTATTTAGCTCTCAGGTACTGAGTTACT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870092 40 - 170124641 AGTCCTGTAGAATTACTTAGCTCTCAGGTGCTGAGTTACT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860446 40 - 171882078 AGTCCTGTAGATTTACTTAGCTCTCAGGTGCTGAGTTACT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787297 40 - 162156779 AGTCCTGTAGAATTACTTAGCTCTCAGGTGCTGAGTTACT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176238 40 +  58131712 AGCCCTGTAGAATTACTTAGCTCTCAGGTGCTGAGTTACT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984149 40 - 132174527 AGTCCTGTGAAATTATTTAGCTCTCATGTGCTGAGTTACT
i calJac3.chr10                C 0 I 242
s mm10.chr2                     58108805 38 - 182113224 AGTCCAGCGAAATGATTCAGCT-TCAGGGACCAAA-CACT
i mm10.chr2                    I 76 C 0
s canFam3.chr30                 26794096 40 -  40214260 ATTCCTCTAGAATTATTTAGCTCTCAGGTGCTGAGTTACT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=192291.000000
s hg38.chr14_KI270725v1_random    145949 45 +    172810 ATTTCCCAGGAGTTGCATTGCCCAAAGTACTGTGGACATTTTTCT
s panTro4.chrUn_GL393505          285379 45 +   1195001 ATTTCCCAGGAGTTGCATTGCCCAAAGTAATGTGGACATTTTTCT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5809490 45 +  72422247 AGTTCCCAGGAGTTGCATTGCCCAAAGCAATGTGGACCtttttct
i ponAbe2.chrUn                C 0 I 1149
s nomLeu3.chr6                  53530829 45 + 121039945 ATTTCCCAGGAGTTGTATTGCACAAAGTAATGTGGACATTTTTCT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870132 45 - 170124641 ATTTCCCAGGAGTTGCATTGCCTAAAGTAATGTGGACATTTTTCT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860486 45 - 171882078 ATTTCCCAGGAGTTGCATTGCCTAAAGTAATGTGGACATTTTTCT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787337 45 - 162156779 ATTTCCCAGGAGTTGCATTGCCTAAAGTAATGtggacatttttct
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176278 45 +  58131712 ATTTCCCAGGAGTTGCATTGCGTAAAGTAATGTGGACATTTTTCT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984431 45 - 132174527 ATTTCCCAGGAGTTGCATTGCCCAAAGTAATGTGGACATTTTTCT
i calJac3.chr10                I 242 C 0
s mm10.chr2                     58108843 44 - 182113224 GCTTCTCTGGAGCAGCAGTGC-TAGAGAACTGTGGACACTTTTCT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26794136 45 -  40214260 ATTTCCCTGGAGTTGCATTGCCCAAAGTAATGTGGGCATTTTTCT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=4500.000000
s hg38.chr14_KI270725v1_random    145994 1 +    172810 C
s panTro4.chrUn_GL393505          285424 1 +   1195001 C
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53530874 1 + 121039945 C
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870177 1 - 170124641 C
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860531 1 - 171882078 C
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787382 1 - 162156779 c
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176323 1 +  58131712 C
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984476 1 - 132174527 C
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58108887 1 - 182113224 C
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26794181 1 -  40214260 C
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e ponAbe2.chrUn                  5809535 1149 +  72422247 I

a score=175624.000000
s hg38.chr14_KI270725v1_random    145995 43 +    172810 ATTTTAAATTTCACCTCACATGGTCCTTTGGTTTTGTTACATT
s panTro4.chrUn_GL393505          285425 43 +   1195001 ATTTTAAATTTCACCTGACATGGTCCTTTGGTTTTGTTACATT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5810684 43 +  72422247 ATTTTAAATTTCACCTCACATGGTCCTTTGGTTTTGTTACATT
i ponAbe2.chrUn                I 1149 C 0
s nomLeu3.chr6                  53530875 43 + 121039945 ATTTTAAATTTCATCTCACATGGTCCTTTGGTTTTGTAACATT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870178 43 - 170124641 ATTTTAAATTTCACCTCACATGGTCCTTTGGTTTTGTAACATT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860532 43 - 171882078 ATTTTAAATTTCACCTCACATGGTCCTTTGGTTTTGTAACATT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787383 43 - 162156779 attttaaatttcacCTCACATGGTCCTTTGGTTTTGTAACATT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176324 43 +  58131712 ATTTTAAATTTCACCTCACATGGTCCTTTGGTTTTGTAACATT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984477 43 - 132174527 ATTTTAACTTTCACCTCGCATGGTCCTTTGGTTTTGTAACATT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58108888 42 - 182113224 ATTTTAACTTTCAGCTCCTGGAGTCTCTTGG-TTTGTGGCATT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26794182 41 -  40214260 ATTTTAACTTTCACCTCATATGGTCCCTTGG-TTTGTAACAT-
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9114495 1258 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=12012.000000
s hg38.chr14_KI270725v1_random    146038 2 +    172810 TT
s panTro4.chrUn_GL393505          285468 2 +   1195001 TT
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9115753 2 -  12672142 TT
i panPan1.JH650621             I 1258 I 3135
s ponAbe2.chrUn                  5810727 2 +  72422247 TT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53530918 2 + 121039945 TT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870221 2 - 170124641 TT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860575 2 - 171882078 TT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787426 2 - 162156779 TT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176367 2 +  58131712 TT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984520 2 - 132174527 TT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58108930 2 - 182113224 TT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26794223 2 -  40214260 TT
i canFam3.chr30                C 0 C 0
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=106505.000000
s hg38.chr14_KI270725v1_random    146040 33 +    172810 GTACCTGTTTTGATTGTTTTTTTCCTCTCTATG
s panTro4.chrUn_GL393505          285470 33 +   1195001 GTACCTGTTTTGATTGCTTTTTTCCTCTCTATG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5810729 33 +  72422247 GTACTTGTTTTGATTTTTTTTTTCCTCTCTATG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53530920 33 + 121039945 GTACCTGTTTTGATTGTTTTTTTCCTCTCTACG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870223 29 - 170124641 GTACCTGTTTTG----TTTTTTTCCTCTCTATG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860577 29 - 171882078 GTACCTGTTTTG----TTTTTTTCCTCTCTATG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787428 29 - 162156779 Gtacctattttg----tttttttcctctctatg
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176369 29 +  58131712 GTACCTGTTTTG----TTTTTTTCCTCTCTATG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984522 33 - 132174527 GTACCTGTTTTGATTGTTTTTTTCCTCTCCATG
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58108932 29 - 182113224 GCAGCTGTTTGG----TCTCTCCCCTGCCCATG
i mm10.chr2                    C 0 I 1174
s canFam3.chr30                 26794225 31 -  40214260 GCAGCTGTTTTTAT--TTCTTTTCTTCTCTGTG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=138231.000000
s hg38.chr14_KI270725v1_random    146073 37 +    172810 AAAATTAGTTGCCAAGTAAGGAGAAAAAGTATTGCTG
s panTro4.chrUn_GL393505          285503 37 +   1195001 GAAATTATTTGCCAAGTAAGGAGAAAAAGTGTTGATG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5810762 37 +  72422247 GAAGTTATTTGCCAAGTAAGGAGAAAAAGTGTTGATG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53530953 37 + 121039945 GAAATTATTTGCCAAGTAAAGAGAAAAAGTGTTGATG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870252 37 - 170124641 GAAATTATTTGCCAAGTAAGGAGAAAAAGTGTTGATG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860606 37 - 171882078 GAAATTATTTGCCAAGTAAGGAGAAAAAGTGTTGATG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787457 37 - 162156779 GAAATTATTTGCCAAGTAAGGAGAAAAAGTGTTGATG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176398 37 +  58131712 GAAATTATTTGCCAAGTAAGGAGAAAAAGTGTTGATG
i chlSab2.chr26                C 0 I 111
s calJac3.chr10                107984555 37 - 132174527 GAAATTATTTGCCAAGCAAGGAGAAAAAATGTTGATG
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26794256 37 -  40214260 GAAATTCTTTGCAAAGTCAGGAGAAAAAGAGTTGATG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=90525.000000
s hg38.chr14_KI270725v1_random    146110 24 +    172810 -TTTTTCCTTATTCAAAAATTATGG
s panTro4.chrUn_GL393505          285540 24 +   1195001 -TTTTTCCTTATTGAAAAATTATGG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5810799 24 +  72422247 -TTTTTCCTTATTCAAAAATTATGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53530990 24 + 121039945 -TTTTTCCTTATTCAAAAATTATGG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870289 24 - 170124641 -TTTTTCCTTATTCAAAAATTACGG
i rheMac3.chr7                 C 0 I 111
s macFas5.chr7                 147860643 24 - 171882078 -TTTTTCCTTATTCAAAAATTACGG
i macFas5.chr7                 C 0 I 111
s papAnu2.chr7                 140787494 24 - 162156779 -TTTTTCCTTATTCAAAAATTACGG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176546 24 +  58131712 -TTTTTCCTTATTCAAAAATTATGG
i chlSab2.chr26                I 111 C 0
s calJac3.chr10                107984592 24 - 132174527 -CTTTTCCTTATTCAAAAATTATTG
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26794293 25 -  40214260 TTATTTCCTTATTCAAAAATTATGG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=21258.000000
s hg38.chr14_KI270725v1_random    146134 6 +    172810 TAGATG
s panTro4.chrUn_GL393505          285564 6 +   1195001 TAGATG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5810823 6 +  72422247 TAGATG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53531014 6 + 121039945 TAGATG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870424 6 - 170124641 TAGATG
i rheMac3.chr7                 I 111 C 0
s macFas5.chr7                 147860778 6 - 171882078 TAGATG
i macFas5.chr7                 I 111 C 0
s papAnu2.chr7                 140787518 6 - 162156779 tagatg
i papAnu2.chr7                 C 0 I 112
s chlSab2.chr26                 36176570 6 +  58131712 TAGATG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984616 6 - 132174527 CAGAAG
i calJac3.chr10                C 0 I 2
s canFam3.chr30                 26794318 6 -  40214260 tggatg
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=1044241.000000
s hg38.chr14_KI270725v1_random    146140 316 +    172810 --AAAAAAatctgattaaataactctattacagtctttctcaactttttactgagataaacttgaaggcactgaaaaggtgaaattttcagctattgaaaatttagaatgtagg---acatcatgccgagatttgaggaaacctatcaataatttagcaagggatggtagtagatacacaaaaag---caattagaagca-aaaaggccttggattcttttcatgttaaagaaaatacattctgaaagtaagtacaaagaccctttgtatttccttcataacctgttccctaacagaataccaggacctatgccaagggaaaaac
s panTro4.chrUn_GL393505          285570 315 +   1195001 --AAAAAAatctgattaaataactctattacagtc-ttctcaactttttactgaggtaaacatgaaggcactgaaaaggtgaaattttcagctattgaaaatttggaatgtagg---acatcatgccgagatttaaggaaacgtatcaataatttagcaagggatggtagtagatacacaaaaag---cgattagaaaca-aaaaggccttggattcttttcatgttaaagaaaatacattctgaaagtaagtacaaagaccctttgtatttcctttataacctgttccctaacagaataccagggcctatgccaagggaaaaac
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5810829 317 +  72422247 --AAAAAAATCTGATTAAATAActctattgaagtctttctcaactttttactaaaataaacatgaaggcactgaaaaggtgaaattttcagctattgaaaatttggaatgtagg---acatcatgccgagatttgaggaaatgtatcagtaatttagaaagggatggtagtagatacacaaaaag---caattagaagcattaaaggccttggattcttttcatgttaaagaaaatacattctgaaagtaagtacaaagaccctttgtatttcctgaataacctgttccctaacagaataccagggcctatgccaaggaataaac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53531020 306 + 121039945 --AAAAAAATCTGATTAAATAACTCTATTACAGTCTTTCTCAACTTTTTACTAAGATAAACATGAAGTCACTGAAAAGGTGAAATTTTCAGCTATTGAAAATTTGGAATGTAGG---ACACCCTGCCGAGATTTGAGGAAACGTATCAATAATTTAGCAAGG----------GATACACAAGAAG---CAATTAGAAGCA-AAAAGGCCTTGGATTCTTttcatgataaagaaaatacattctgaaagtaagtacaaagaccctttgtatttcctttataacctgttccctaacagaataccagggcctatgccaatggaaaaac
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870430 308 - 170124641 --AAAAAAatctgattaaatatctctattactgtatttctcaactttttactaagataaacatgaaggcactgaaacggtgaaaatttcagctattgaaaatttggaatgtagg---acatcacgccgagatttgag--------tcaataatttagcaagggatgatagtagatacacaagaag---caattagaagca-aaatgtcctgggattcttttcatgataaagaaaatacattctgaaagtaagtacaaagaccctttgtatttcctttatcacctgttccctaacagaataccagggcctatgccaatggaaaaac
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147860784 308 - 171882078 --AAAAAAatctgattaaatatctctattactgtatttctcaactttttactaagataaacatgaaggcactgaaacggtgaaaatttcagctattgaaaatttggaatgtagg---acatcacgccgagatttgag--------tcaataatttagcaagggatgatagtagatacacaagaag---caattagaagca-aaatgtcctgggattcttttcatgataaagaaaatacattctgaaagtaagtacaaagaccctttgtatttcctttatcacctgttccctaacagaataccagggcctatgccaatggaaaaac
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787636 316 - 162156779 --aaaaaaatctgattaaataTCTCTATTACTGTATTTCTCAACTTTTTACTAAGATAAACATGAAGGCACTGAAACGGTGAAAATTTCAGCTATTGAAAATTTGGAATGTAGG---ACATCACGCCGAGATTTGAGGAAACGTATCAATAATTTAGCAAGGGATGGTAGTAGATACACAAGAAG---CAATTAGAAGCA-AAATTTCCTGGGATTCTTTtcatgataaagaaaatacattctgaAAGTAAGTACAAAGACCCtttgtatttcctttatcacctgTTCCCTAACAGAATACCAGGGCCTATGCCAATGGAAAAAC
i papAnu2.chr7                 I 112 C 0
s chlSab2.chr26                 36176576 316 +  58131712 --AAAAAAatctgattaaatatctctattactgtatttctcaactttttactaagataaacatgaaggcattgaaacggtgaaaatttcagctattgaaaatttggaatgtagg---acatcatgccgagatttgaggaaacgtatcaataatttagcaagggatggtagtagatacacaagaag---caattagaacca-aaatgtcctgggattcttttcatgataaagaaaatacattctgaaagtaagtacaaagaccctttgtatttcctttatcacctgttccctaacagaataccagggcctatgccaatggaaaaac
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984624 315 - 132174527 --AATAAAATCTGATTAAATAAGTCTATCAcagtatttctcaac-ttttactaagataaatataaggacactgaaaaggtgaacatttcagctattgaaaatttggaatgtagg---gcatcatgctgcgatttgaggaaacatatcaataatttagcaagggatggtagtggaaacataagaag---caattagaaaca-aaaaggctttggattcttttcatgataaagaaaatacattctgaaaataagtacaaagaccctttgcatttcctttataacctgctccctaacagaatacgagggcccatgccaatggaaaaac
i calJac3.chr10                I 2 C 0
s canFam3.chr30                 26794324 319 -  40214260 aaaacaaaatctgattaggcaactccattgcagactgttccaatcttttactaaaatgaacatgagggcactgaaaaggtgagaactcaggccactgaaaatttagaatgtaagtcaacatcatgctgcaatttgaggagaC-CATCAATAATTTAGTGAGT--TTGTGGTGGCTTCATGAAAAGTAACAATTAGAAGCA-AAAATGCTGTGGCTTCTTTTTATGACAAAGAAAAGACATCCTGAAAATAAGTAGAGAAGCCCTTTATATAGCCCTATTA--TTGTTTCCTGACAAAATATAAGGACCTATGCCAATAGGGAAAC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58768467 4971 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=7055.000000
s hg38.chr14_KI270725v1_random    146456 2 +    172810 tg
s panTro4.chrUn_GL393505          285885 2 +   1195001 tg
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58773438 2 + 158137892 tg
i gorGor3.chr7                 I 4971 I 10
s ponAbe2.chrUn                  5811146 2 +  72422247 tg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53531326 2 + 121039945 tg
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870738 2 - 170124641 tg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147861092 2 - 171882078 tg
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787952 2 - 162156779 TG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176892 2 +  58131712 tg
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984939 2 - 132174527 ag
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26794643 2 -  40214260 TA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=37090.000000
s hg38.chr14_KI270725v1_random    146458 10 +    172810 tgtagatgtg
s panTro4.chrUn_GL393505          285887 10 +   1195001 tgtagatgtG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5811148 10 +  72422247 TGTGGGTGTG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53531328 10 + 121039945 tgtagatgta
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870740 10 - 170124641 tgtagatgtg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147861094 10 - 171882078 tgtagatgtg
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787954 10 - 162156779 TGTAgatgtg
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176894 10 +  58131712 tgtagatgtG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984941 10 - 132174527 tgtagatgtg
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26794645 10 -  40214260 TATAGATGTA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58773440 10 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=8790.000000
s hg38.chr14_KI270725v1_random    146468 2 +    172810 tt
s panTro4.chrUn_GL393505          285897 2 +   1195001 TT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58773450 2 + 158137892 tt
i gorGor3.chr7                 I 10 I 1259
s ponAbe2.chrUn                  5811158 2 +  72422247 TT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53531338 2 + 121039945 tt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870750 2 - 170124641 tt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147861104 2 - 171882078 tt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787964 2 - 162156779 tt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176904 2 +  58131712 TT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984951 2 - 132174527 tt
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26794655 2 -  40214260 CT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=4076836.000000
s hg38.chr14_KI270725v1_random    146470 1272 +    172810 -tttctcttctggtgctgATATGGTCATAGGATGGGGATGCTCTCTCTTTGCTATTTCTCTAACCAATCT-TATTACTATATCAATTAATATCAAAACATTTCAAGtctagttactgacaagagagtaaactagagaggactcctgact-cataacaaggattcagatctagagt-tctcatagagtgaagagattatgtttgcaactgagaaacgaatgtaaaaactgtaaggaatccctggagagtctgaaagTCCCTGAGCCCTGATACAGAGAGCAAATGGCAGTTTAAGGCT---Gaccacctctcattccctccactatttctcacataagaatattacagtacactcttcactgctctctctgcttcaagcttt-cccttccacctctctattccacag---agaaggtagaatgctcctcttaaaatacaaggtggattattttactcatctgcttaaaaacttt---------tcaatggcttctcatctcattctgaataaaattcaaagtgctttccaggcttacaagtccctgtacgatcctgagccttgacaatatctctgacaaaatctccagcct-cccattggtcactcctgctctatcacagtagtgtacttgctgctgttttgaaatatagaaagcatgattttacttcagtgtctttatccttgttattttctctgcctgcctttttctgtgtcttgggcattccatatgactcatctcctcattcccctt-agtcctttttccatgtggcatttgaatacagaaatcttcactatctaaaattatactcccatatccataacttcttttattgctctagatatccttacagcatttatcattaccatttattagcttatttgtctttccttactaaaatgtaaactaaatacagacagaaatttttgtAATTA---aaaaacacataacaaaaaaatctaccatcttaacaaaattttaagtttgcagaacatt-ttgttaatgatatacacattgttgtacagcagaaatctagaatgtttttatcttgcttgactgaaactctacacctggtgaacagcaactccagatttcctgtttcct-ccaggccctgacaactaccattttatcttgtgtttccatgtgtttggctactttcaatacatcatataaatggaatcacgatatatttgtgtttgtgtctggcttatttcacttagcacaatatccttaagattgatacatgttgaaataagacagaattttccttttgaaggcttactaatattccattctgtg--
s panTro4.chrUn_GL393505          285899 1271 +   1195001 -TTTCTCTTCTGGTGCCGATATGGTCATAAGATGTGGATGCTCACTCTTTGCTATTTCTCTAACTAATCT-TATTACTACATCAATTAATATCAAAACATTTCAAGCGTAgttactgacaagagagtaaactagagtggactcctgact-cataacaaggattcagatctagagt-tctcatggagtgaagaggttatgtttgcaactgagaaacaaacgtaaaaactgtaaggaatccctggagagtctgaaagTCCCTGAGCCCTGATACAGACAGCAAATGGCAGTTTAAGGTT---Gaccacctctcattccctccactatttctcacataagaatattacagtacattcttcactgctctctctgcttcaagccttgcccttccacctctctattccacag---agaaggtagaatgctcctcttaaaataccaggtggattattttactcatctgcttaaaaacttt---------tcaatggcttctcatctcattctgaataaaattcaaagtgctttccaggcttacaagtccctgtacgatcctgagccttgacaatatctctgacaaaatctccagcct-cccattggtcactcctgctctgtcacactagtgtccttgctgttgttttgaaatatagaaagcatgattttacttcattgtctttatccttgttattttctctgcctgccttcttctgtgtctttggcattacatatgactcatctcttcattcccctt-agtcctttttccatgtggcatttgaatacagaaatcttcactatctaaaattatactcccatatccataacttcttttattgctctagatatccttacagcatttatcattaccatttattagcttatttgtctttccttactaaaatgtaaactaaatacagatagaaatttttgtAATTA---aaaaacacataacaaaaaaatctaccatgttaacaaaattttaagtttgcagaacatt-ttgttaatgatatacacattgttgtacaggtgaaatctagaatgtttttatcttgcttgactgaaactccacacctggtgaacagcaactccagatttcctgtttcct-ccagaccctgaaaactaccattttatcttctgtttccatgtgtttggctactttcaatacctcatataaatggaatcaagatatatttgtctttgtgtctggcttatttcacttagcaaaatatccttaagattgatacatgttgaaatatgacagaatttcccttttaaaggctgaataatattccat--tgtg--
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5811160 1270 +  72422247 -TTTCTCTTCTGGTGCTGATATGGTCATAGGATGGGGATGCTCTCTCTTTGCTATTTCTCTAACCAATCT-TATTACTATAGCACCTAATATTAAAACATTTCAAGTCTAGTTACTGACAAGAGAGTAAACTAGAGTGGACTCCTGACT-CATAACAAGGATTCAGATCTACAGT-TCTCATAGAGTGAAGAGATTATGTTTGCAACTGAGAAACAGATGTAAAAACTGTAAGGAATCCCTGGAGAGTCTGAAAGTCCCTGAGCCCTGATACAGAGAGCAAATGGCAGTTTAAGGCT---Gaccacctctcattcccggcactattcctcacataagaatattacagtacactcttcactgctctctctgcttcaagctttgcccttccacctctctgttccacagagaagaaggtaggatgctcctcttaaaatacaaggcagattattttactcatctgcttagaaacttt---------tcaatggcttctcatctcattctgaataaaattcaaagtgctttccaggcttacaagtccctgtacgatcctgagccttgacagtatctcagacaaaatctccagcct-cccattggtcactcctgctctgtcacactagtgtcctcgctgttgttttgaaatatagcaagcatgatttttcttcagtgtctttatccttgttattttttctgcctgccttgttctgtgtcttgggcattccatatgactcatctcctcattcccctt-agtcctttttccatgtggcatttgaatacagaaatcttcactatctaaaattatactcccatatccataacttcttttattgctgtagatatccttacagcatttatcattgcc----attagcttatttgtctttccttactaaaatgtaaactaaatacagacagaaatttttgtAATTA---aaaaacacataacaaaaaaatccaccatcttaacaaaattttaagtttgcagaacatt-ttgttaatgatatacacattgttgtacagcagaaatctagaatgtttttatcttgcttgactgaaactccacacctggggaacagcaactccagatttcctgtttcct-ccaggccctgacaactaccattttatcttctgtttccatgtgtttggctactttcaatacctcatatagatggaaacacaatatatttgtctttgtgtctggcttatttcacttagcacaatatccttaagattgatacatgttgaaatatgacagaatttcccttttgaaggctgaataatattccat--tgta--
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53531340 1275 + 121039945 -tttctcttctggtgctgATGTGGTCATAGGACAGTGACGCTCTCTCTTCGCTATTTCTCTAACCAATCT-TATTACTATGTCAATTAATATCAAAACATTTCAAGtctagttactgacaagagagtaaactagactggactcctgact-cataacaagttttcagatctagagt-tctcatagagtgaagagattatgtttgcaactgagaaacaaatataaaaactgtaaggaatcactggagagtctgaaagTCCCTGAGCCCTGATATAGAGAGCAAATGGCAGCCCTGATATAGAGAGCACCTCTCATTCcctccactatttctcgcatgagaatattacagtacactcttcactgctctctctgtttcatgctttgcccttccacctctctattccacag---agcaggtagaatgttcctcttaaaatacaaggtggattattttactcatctgcttaaaaacttt---------tcaatggcttctcatctcattctgaataaaattcaaagtgctttccaggcttacaagtccctgtacgatcctgagccttgactatatctctgacaaaatctccaacct-cccattggtcactcctgctctgtcacactagtgtccttgctgttgttttgaaatatagcaagcatgatttcacttcagtgtctttttccttgttaatttctctgcctgccttgttctgtgtcttgggcattccatatgactcatctcctcattcccctt-agtcctttttccatgtggcattttaatatagaaatcttcactatctaaaattattctcccatatccataacttcttttattgctctacatatccttacagcatttatcattaccatttatcagcttatttgtatttccttactaaaatgtaaactaaatacagacagaaatttttgtAATTA---aaaaacacataac-aaaaaatctaccatcttaacaaaattttaagtttgcagaacatt-ttgttaatgatatacacattgttgtacagcagaaatctagaatgtttttatcttgcttgactgagactccatacctagtgaacagcaactccagattttctgtttcct-ccaggccctgataactaccgttttatcttctgtttccatgtgtttggctactttcaatacctcatataaatggaatcactagatatttgtctttgtgtgtggcttatttcacttagcacaatatccttaagattgatatatgttgagatatgacagaatttcccttttgaaggctgaataatattccattgtgta--
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145870752 1261 - 170124641 -tttctcttctggtgctgATATGGTCATAGGATGGGGATGCTGTCTCTTCACTATTTCTCTAACCAATCT-TATTACTATATCAATTAATATCAAAACATTTCAAGtctagttactgacaagagagtaaactagagtgaactcctgact-cataacaaggattcagatctagagt-tctcacagagtgaagagattatgtttgcaactgagaaacaagtgtaaaaactgtaaggaatccctggagagtctgaaagTCCCTGAGCCCTGATATAGAGGGCAAATGGCAGTTTAAGGCT---Gaccatctctcattccctccactagtccttgcataagaatattacaatacacccttcactgctctctctgcttcaagctttgcccttccacctctctattgcacag---agcaggtagagtgttcctcttaaaatacaaggtgaattattttactcatctgcttaaaaatttt---------tcaatggcttctcatctcattctgaataaaattcaaagtgcgtttcaggcttacaagtccctgtatgatcctgagccttgactgtatctctgacaaaatctccaacct-cccattgctcactcctgctctgtcacacgagtgtccttgctgttgttttgaaataaagc-agcatgatttcacttcaatatctttatccttgttattttctctgcctgccttgttctgtgtcttggaaattccatacgactgatctcctcattcccctt-agtcctttttccatgtggcattttaatacagaaatcttcactatctaaaattatactcccatatccataacttcttttattgctctagatgtccttaaagcatttatcactacc----attagcttatttgtctttccttactaaaatgtaaactAA--ACAGACAGAAATTTttgtaatt----aaaaatatataac-aaaaaatct-ccatcttaacaaaatgttaagtttgcagaacatt-ttgttaatgatatacacattgttgtacagcagcaatctagaatgtttttatcttgcttgactgaaactccatacctggtgaacagcaactccagatttcctgtttcct-ccaggccctgacgactaccattttatcttctgtttccacgtgtttggctactttcaatacctcatataaatggaatcacgagatatttgtttttgtgtctggcttatttcacttagcacaatatccttaagattgatacatgttgaaatatgacagaatttcccttttgaaggctgaataatattccat--tgtg--
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147861106 1261 - 171882078 -tttctcttctggtgctgATATGGTCACAGGATGGGGATGCTGTCTCTTCACTATTTCTCTAACCAATCT-TATTACTATATCAATTAATATCAAAACATTTCAAGTCTAGTTACTGACAAGAGAGTAAACTAGAGTGAACTCCTGACT-CATAACAAGGATTCAGATCTAGAGT-TCTCACAGAGTGAAGAGATTATGTTTGCAACTGAGAAACAAGTGTAAAAACTGTAAGGAATCCCTGGAGAGTCTGAAAGTCCCTGAGCCCTGATATAGAGGGCAAATGGCAGTTTAAGGCT---GACCATCTCTCATTCcctccactagtccttgcataagaatattacaatacacccttcactgctctctctgcttcaagctttgcccttccacctctctattgcacag---agcaggtagagtgttcctcttaaaatacaaggtgaattattttactcatctgcttaaaaatttt---------tcaatggcttctcatctcattctgaataaaattcaaagtgcgtttcaggcttacaagtccctgtatgatcctgagccttgactgtatctctgacaaaatctccaacct-cccattgctcactcctgctctgtcacacgagtgtccttgctgttgttttgaaataaagc-agcatgatttcacttcaatatctttatccttgttattttctctgcctgccttgttctgtgtcttggaaattccatacgactgatctcctcattcccctt-agtcctttttccatgtggcattttaatacagaaatcttcactatctaaaattatactcccatatccataacttcttttattgctctagatgtccttaaagcatttatcactacc----attagcttatttgtctttccttactaaaatgtaaactaa--acagacagaaatttttgtAATt----aaaaatatataac-aaaaaatct-ccatcttaacaaaatgttaagtttgcagaacatt-ttgttaatgatatacacattgttgtacagcagcaatctagaatgtttttatcttgcttgactgaaactccatacctggtgaacagcaactccagatttcctgtttcct-ccaggccctgacgactaccattttatcttctgtttccacgtgtttggctactttcaatacctcatataaatggaatcacgagatatttgtttttgtgtctggcttatttcacttagcacaatatccttaagattgatacatgttgaaatatgacagaatttcccttttgaaggctgaataatattccat--tgtg--
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140787966 1261 - 162156779 -tttctcttctggTGCTGATATGGTCATAGGATGGGGATGCTGTCTCTTCACTATTTCTCTAACCAATCT-TATTACTATATCAATTAATATCAAAACATTTCAAGTCTAGTTACTGACAAGAGAGTAAACTAGAGTGGACTCCTGACT-CATAACAAGGATTCAGATCTAGAGT-TCTCACAGAGTGAAGAGATTATGTTTGCAACTGAGAGACAAGTGTAAAAACTGTAAGGAATCCCTGGAGAGTCTGAAAGTCCCTGAGCCCTGATATAGAGGGCAAATGGCAGTTTAAGGCT---GACCATCTCTCATTCCCTCCACTAGTCCTTGCATAAGAATATTACAATACACCCTTCACTGCTCTCTCTGCTTCAAGCTTTGCCCTTCCACCTCTCTATTGCACAG---AGCAGGTAGAGTGTTCCTCTTAAAATACAAGGTGGATTATTTTACTCATCTGCTTAAAAACGTT---------TCAATGGCTTCTCATCTCATTCTGAATAAAATTCAAAGTGCGTTTCAGGCTTACAAGTCCCTGTATGATCCTGAGCCTTGACTGTATCTCTGACAAAATCTCCAACCT-CCCATTGCTCACTCCTGCTCTGTCACATGAGTGTCCTTGctgttgttttgaaataaagc-AGCATGATTTCACTTCAATATCTTTATCCTTGTTATTATCTCTGCCTGCCTTGTTCTGTGTCTTGGAAATTCCATACGACTGATCTCCTCATTCCCCTT-AGTCCTTTTTCCATGTGGCATTTTAATACAGAAATCTTCACTATCTAAAATTATACTCCCATATCCATAACTTCTTTTATTGCTCTAGATGTCCTTAAAGCATTTATCACTACC----ATTAGCTTATTTGTCTTTCCCTACtaaaatgtaaactaa--acagacagaaatttttgtaatt----aaaaatatataac-aaaaaatcT-CCATCTTAACAAAATGTTAAGTTTGCAGAACATT-TTGTTAATGATATACACATTGTTGTACAGCAGCAATCTAGAATGTTTTTATCTTGCTTGACTGAAACTCCATACCTGGTGAACAGCAACTCCAGATTTCCTGGTTCCT-CCAGGCCCTGACGACTACCATTTTATCTTCTGTTTCCACGTGTTTGGCTACTTTcaatacctcatataaatggaatcacgagatatttgtttttgtgtctggcttatttcacttagcacaatatcCTTAAGATTGATACATGTTGAAATATGACAGAATTTcccttttgaaggctgaataatattccat--tgtg--
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36176906 1259 +  58131712 -TTTCTTTTCTGGTGCTGATATGGTCATAGGATGGGGATGCTGTCTCTTCACTATTTCTCTAACCAATCT-TATTACTATATCAATTAATATCAAAACATTTCAAGTCTAGTTACTGACAAAAGAGTAAACTAGAGTGGACTCCTGACT-CATAACACGGATTCAGATCTAGAGT-TCTCACAGAGTGAAGAGATTATGTTTGCAACTGAGAAACAAGTGTAAAAACTGTAAGGAATCCCTGGAGAGTCTGAAAGTCCCTGAGCCCTGATACAGAGAGCAAATGGCAGTTTAAGGCT---GACCATCTCTCATTCcctccactagtccttgcataagaatattacaatacacccttcactg--ctctctgcttcaagctttgcccttccacctctctattgcacag---agcaggtagagtgttcctcttaaaatacaaggtggattattttactcatctgcttaaaaacttt---------tcaatggcctctcatctcattctgaataaaattcaaagtgcgttccaggcttacaagtccctgtatgatcctgagccttgactatatctctgacaaaatctccaacct-cccattgctcactcctgctctgtcacacgagtgtccttgctgttgttttgaaataaagc-agcatgatttcacttcaatgtttttattcttgttattttctctgcctgccttgttctgtgtcttggaaattccatacgactgatctcctcattcccctt-agtcctttttccatgtggcattttaatacagaaatcttcactatctaaaattatactcccatatccataacctcttttattgctctagatgtccttaaagcatttatcactagc----attagcttatttgtctttccttactaaaatgtaaactaa--acagacagaaatttttgtAATt----aaaaatatataac-aaaaaatct-ccatcttaacaaaatgttaagtttgcagaacatt-ttgttaatgatatacacattgttgtacagcagcaatctagaatgcttttatcttgcttgactgaaactccatacctggtgaacagcaactccagatttcctgtttcct-ccaggccctgacaactgccattttatcttctgtttccatgtgtttggctactttcaatacctcatataaatggaatcaggagatatttgtttttgtgtctggcttatttcacttagcacaataaccttaagattgatacatgttgaaatatgacagaatttccctttagaaggctgaataatattccat--tgtg--
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107984953 1214 - 132174527 -tttctcttctggtgctgGTGTGGTCATAGGATGGGGA----CTCTCTTTGCTATTTCTCTAACTAATCT-TATTAC----------AATATCAAAACATTTCAAGTCTAGTTACTGACAAGAGAGTAAGCTAGAATGGCTTCCTGACTCCCTAACAAGGATTCAGATCTAGAGA-TCTCATAGAGTGAAGAGATTATGTTCGCAACTGAGAAACAAATGTCAAAACTGTAAAGAATCCCTGGAGAGTCTGAAAGTCCCTGAGCCCTGATATAGAGAGCAAATGGCAGTTTAAGACT---GATCACCTCTCATTATCTccactatttctcacaaaagaatattacagtaagcgcttcactgctttctctgcttcaggctttgccttccca-ctctctattccacag---agcagacagtgtggtcctcttaaaatgtaaggtggattattttactcatctgcttgaaaacttt---------tcaatggattctcatctcattccgaataaaactgaaagcgtttgctagggttacaagtccctgtatgatcctgagccttgac--tatctctgacaaaatctccaacct-cctatttctcactcctgctctgtcacactagtgtccttactgttgttttgaattatagcaagcatgatttcacttcagggtctttacccttgttattttctctgcctgccttgttttgtgtcttgggcattccatatgactcatctcctcatccccctt-agtcctttttccgtgtgatattt-aatacagaaaccttcactaactaaaattatactc------ccataactctttttattgctccagatatccttacagcatttatccttaccatttATTAATTTACTTGTCTTTCCTTACTAAAATGT---TTTTATACAGACAGAAATTTTTGTCATTA---aaaaacacgtaac-acaaaatctaccatcttaacaaaatgtcacgtgtgcagaacagt-ttgttaatg--atacacattgttgtacagcagcaatctagaatgtttttatcttgcttgtctgaaactctatacc------------------------ctctttccc-ccaggccctggcaactaccattttatcttctgtttccatgtgtttggctactttcaataccccatataaatggaatcatgaaatatttgtttttgttactggcttatttcacttagcacaatatccttaagattgatacatgttggaatatgacagaatttccctattgaaggctgaataatattccat--------
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26794657 1175 -  40214260 CCTATTCTTCTGGTCTTGGTACAG--AGAGGATTTGG-----CCCTCTTCACCATTCCTCTAACC--TCTGTATTATCATATTAGT-AATATCGAAACATTTGCAGTATAAATTCTGGCAGGATAACAAACTGGAGTGGACTGCTATCTCCCTAACCAGAATCCAGATCTAAGGTGTCACACA-AGTGAAGGGTTCATGTTTGCACCTAAGAAGTGAATGTGGAAACTGTGAGGAAGCCTT------------------TGAGCTCTAATGTCCAGAAGAAATGGCAGTTGGAGGCT---GATGACCTCGTATCATTTGTACTatttctcacctaagagt-----aataagcacctaactggtctctctgctgctagctttgcactatag--tctctactccgtag---agtaggtacagtgaccttgttgaaatataaagcagataatttgactcttctgctgaaacacattgttctgctatcagtggcttcctatcctatccagattaaaattcaaagttcttgccaagcttacaagcctgtacaggatcctgtccctcaactgcctctctgaaaaaatcttcaacctccccattgctcactcctg-tcagtcactctggtgtcattgctgttgttttgaaataagtgaagcatgattccaattcagggtctttatccttgctgttttctctgcatgccttgctggatgccttgggcgttccacatggcttacttccttactgccctcaagttctttgctcatatgccagtttaacacagaaatatttactcactaaacttgcacac--atatccttagtttcttctcttgctcctaacatccttgcagcatttgtcactatt----atttactacttcatcttttcccactaaaatataagctcaatatggacagattttttttttattatggtaagaaacacagc-atgaaatctaccctcttaaaattat-ttaagtgtaaatgacattattgtcaactatatgcatgttgttgtacagtagatctctagaacttatttatctt-cttaattgaaactctgtaaccattgaacaaca---------tttctctctcctgccagcccctggcaaacaacattttactctttgtgtctatgagtttgactaatttagatatttcttgtaagttgaatcatg---------------------------------tagcac------------------------------ataaaaatatttcctttcctaagtctgaataatttttcat--tgtatg
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58773452 1259 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10772710 12422 +  21366645 I

a score=19071.000000
s hg38.chr14_KI270725v1_random    147742 9 +    172810 tgtgtatgt
s panTro4.chrUn_GL393505          287170 9 +   1195001 tgtgtgtgt
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812430 9 +  72422247 tgtgtatat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53532615 9 + 121039945 tgtgtatat
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145872013 9 - 170124641 tgtatatgt
i rheMac3.chr7                 C 0 I 2
s macFas5.chr7                 147862367 9 - 171882078 tgtatatgt
i macFas5.chr7                 C 0 I 2
s papAnu2.chr7                 140789227 9 - 162156779 tgtgtatgt
i papAnu2.chr7                 C 0 I 2
s chlSab2.chr26                 36178165 9 +  58131712 tgtgtgtgt
i chlSab2.chr26                C 0 I 2
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58773452 1259 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832 0 -  40214260 C
e saiBol1.JH378136              10772710 12422 +  21366645 I
e calJac3.chr10                107986167 0 - 132174527 C

a score=-1180.000000
s hg38.chr14_KI270725v1_random    147751 4 +    172810 -atat
s panTro4.chrUn_GL393505          287179 2 +   1195001 -at--
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812439 4 +  72422247 -atat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53532624 4 + 121039945 -atat
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145872024 4 - 170124641 -gtgt
i rheMac3.chr7                 I 2 C 0
s papAnu2.chr7                 140789238 4 - 162156779 -gtgt
i papAnu2.chr7                 I 2 C 0
s chlSab2.chr26                 36178176 4 +  58131712 -atat
i chlSab2.chr26                I 2 C 0
s calJac3.chr10                107986167 3 - 132174527 cac--
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58773452 1259 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832 0 -  40214260 C
e saiBol1.JH378136              10772710 12422 +  21366645 I
e macFas5.chr7                 147862376 2 - 171882078 I

a score=3128.000000
s hg38.chr14_KI270725v1_random    147755 3 +    172810 ata
s ponAbe2.chrUn                  5812443 3 +  72422247 aca
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr7                 145872028 3 - 170124641 ata
i rheMac3.chr7                 C 0 C 0
s papAnu2.chr7                 140789242 3 - 162156779 ata
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36178180 3 +  58131712 ata
i chlSab2.chr26                C 0 I 989
s calJac3.chr10                107986170 3 - 132174527 aca
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58773452 1259 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832 0 -  40214260 C
e saiBol1.JH378136              10772710 12422 +  21366645 I
e macFas5.chr7                 147862376 2 - 171882078 I
e nomLeu3.chr6                  53532628 0 + 121039945 C
e panTro4.chrUn_GL393505          287181 0 +   1195001 C

a score=-3280.000000
s hg38.chr14_KI270725v1_random    147758 13 +    172810 c--------------------------acatAAatatac
s ponAbe2.chrUn                  5812446 39 +  72422247 catatatataccatatatacacaccatacatatatatac
i ponAbe2.chrUn                C 0 C 0
s rheMac3.chr7                 145872031 13 - 170124641 --------------------------tatataaatatac
i rheMac3.chr7                 C 0 I 1054
s papAnu2.chr7                 140789245 12 - 162156779 --------------------------tatataaatata-
i papAnu2.chr7                 C 0 C 0
s calJac3.chr10                107986173  4 - 132174527 ----------------------------caca-------
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58773452 1259 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832  0 -  40214260 C
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e macFas5.chr7                 147862376  2 - 171882078 I
e nomLeu3.chr6                  53532628  0 + 121039945 C
e panTro4.chrUn_GL393505          287181  0 +   1195001 C

a score=1390.000000
s hg38.chr14_KI270725v1_random    147771 2 +    172810 ca
s panTro4.chrUn_GL393505          287181 1 +   1195001 -a
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812485 2 +  72422247 ca
i ponAbe2.chrUn                C 0 C 0
s papAnu2.chr7                 140789257 2 - 162156779 ca
i papAnu2.chr7                 C 0 C 0
s calJac3.chr10                107986177 2 - 132174527 ca
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58773452 1259 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832 0 -  40214260 C
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e macFas5.chr7                 147862376 2 - 171882078 I
e nomLeu3.chr6                  53532628 0 + 121039945 C

a score=8159.000000
s hg38.chr14_KI270725v1_random    147773 13 +    172810 tatatatacacca
s panTro4.chrUn_GL393505          287182 13 +   1195001 tatatatacacca
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58774711 13 + 158137892 tatatatacacca
i gorGor3.chr7                 I 1259 I 781
s ponAbe2.chrUn                  5812487 13 +  72422247 tatatatacacca
i ponAbe2.chrUn                C 0 C 0
s papAnu2.chr7                 140789259 10 - 162156779 tatacatata---
i papAnu2.chr7                 C 0 C 0
s calJac3.chr10                107986179 10 - 132174527 cacacacaca---
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832  0 -  40214260 C
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e macFas5.chr7                 147862376  2 - 171882078 I
e nomLeu3.chr6                  53532628  0 + 121039945 C

a score=-899.000000
s hg38.chr14_KI270725v1_random    147786 28 +    172810 tacatatatatgccatactatatttatc
s panTro4.chrUn_GL393505          287195  3 +   1195001 tac-------------------------
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812500 28 +  72422247 tacatatatataccatactatatatacc
i ponAbe2.chrUn                C 0 C 0
s papAnu2.chr7                 140789269 28 - 162156779 tatgtatatataccatattttctttatc
i papAnu2.chr7                 C 0 I 3502
s calJac3.chr10                107986189  1 - 132174527 --c-------------------------
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58774724 781 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832  0 -  40214260 C
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e macFas5.chr7                 147862376  2 - 171882078 I
e nomLeu3.chr6                  53532628  0 + 121039945 C

a score=1345.000000
s hg38.chr14_KI270725v1_random    147814 49 +    172810 atac-------------------------------------------------atatatatatacac-catacatatatataccatacatatatatacc
s panTro4.chrUn_GL393505          287198 33 +   1195001 --------------------------------------------------------tatatatatac-catacgtatat---------atgtatacact
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812528 98 +  72422247 atacatatatatataccatacatatatatatacaccatatatatatacaccatatatatatatacac-catatatatatacaccatatatatatacacc
i ponAbe2.chrUn                C 0 C 0
s calJac3.chr10                107986190 32 - 132174527 ---------------------------------------------------------acacacacacacaaacacacac---------atatatatgc-
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58774724 781 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832  0 -  40214260 C
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I
e macFas5.chr7                 147862376  2 - 171882078 I
e nomLeu3.chr6                  53532628  0 + 121039945 C

a score=1818.000000
s hg38.chr14_KI270725v1_random    147863 4 +    172810 atac
s panTro4.chrUn_GL393505          287231 4 +   1195001 atat
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812626 4 +  72422247 atat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53532628 4 + 121039945 atat
i nomLeu3.chr6                 C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58774724 781 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832 0 -  40214260 C
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e calJac3.chr10                107986222 0 - 132174527 C
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I
e macFas5.chr7                 147862376 2 - 171882078 I

a score=2269.000000
s hg38.chr14_KI270725v1_random    147867 37 +    172810 at-----------atatatatata---tatatatatataCAC----------------------ACACACACA
s panTro4.chrUn_GL393505          287235 28 +   1195001 at-----------atatatatata---tatatatataaacac-------------------------------
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812630 73 +  72422247 atatatatacaccatatatatatacactatatatatatacaccatatatatattttttatatatatatataCA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53532632 37 + 121039945 at-----------atatatatata---tatatatatacacac----------------------acacacaca
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147862378 37 - 171882078 gt-----------gtatatatata---aatatacatatacat----------------------atatatgta
i macFas5.chr7                 I 2 C 0
s calJac3.chr10                107986222  1 - 132174527 ------------------------------------------------------------------------a
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58774724 781 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26795832  0 -  40214260 C
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=170903.000000
s hg38.chr14_KI270725v1_random    147904 147 +    172810 tatataccatattttcttcatctgttcatttgatgatggacttttagattgtttctactttttggctattgtgaataattctgtaatgaatatgggaatgcaaata----tcacttcaagatcttgttttca-------attattttggaa-----------ttattca
s panTro4.chrUn_GL393505          287263 142 +   1195001 -----accatattttctttatctgttcatttgatgatggacttttagattgtttctactttttggctattgtgaataattctgtaatgaatatgggaatgcaaata----tcacttcaagatcttgctttca-------attattttggaa-----------ttattca
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812703 147 +  72422247 Catacaccatattttctttatctgttcatttgatgatggagtgttagattgtttctactttttggctatggtgaataattctgtaatgaatataggaatgcaaata----tcacttcaagatcttgttttca-------attattttggaa-----------ttattca
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53532669 128 + 121039945 cacacaccatattgtctttatctgttcatttgatgatggacatttagattgtttctactttttggctattgtgaataattctgcaatgaacatgggaatgcaaata----tcacttcaagatcttgtt-------------------------------------ttca
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147862415 126 - 171882078 tatataccatattttctttatctgtttatttgatgatggacatttagattgtttctactttttggctattgtgaataattctgcaa-aaacat-ggaatgcaaata----taacttcaagatcttgtt-------------------------------------ttca
i macFas5.chr7                 C 0 C 0
s calJac3.chr10                107986223 128 - 132174527 cacacaccctattttctttatctattcatttgatgatggacatctaagttatttatactttttggctattgtgaataattttgcaatgagtgttggaatgcaaata----tcactttaagattttgct-------------------------------------ttca
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26795832 169 -  40214260 aatataacacattttctttatccattcatctgttaatggacatttagattgtttctatcccttggctattgtgaataatgcagcaatgaacatgggagtgcaaatgctgtttggttggagtttttatttttatttttttatttttttaaagattttatttgtttattca
i canFam3.chr30                C 0 I 168
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58774724 781 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=695145.000000
s hg38.chr14_KI270725v1_random    148051 505 +    172810 attattttggaaaaatgcccacaagtgggattgctgcatcatat-ggtaggtctattttttaatgttttgaggaccctccatactgttttccatagtggctctaccattttacattcctactgacagtacataaggttctaattcaatttctccacatcttcatcaacacttgctattt-tcttttttttaaaatggtcat----acagttatgaggtgataaatcccgttgtgattttaattagcatttccctgatgattaatgatgttgagtatctttttatatccctgttggtcatttgcatgtcttcctgaaaaatatctatttaagaatttggccattttaaaattgggt-----------------------tatgtgtttatttgcttttgagttctaggt----------gtttcttatatattttggatattaagcccttagcacatatacggttttcaaatattttctccaattctataggctgcctgttcactctgtt----gtttccttttttgcacagaagcattttatcttgat
s panTro4.chrUn_GL393505          287405 505 +   1195001 attattttggaaaaatgcccacaagtgggattgctgcatcatat-ggtaggtctactttttaatgttttgaggaccctccatactgttttccatagtggctctaccattttacattcctactgacagtacgtaaggttctaattcaatttctccacatcttcatcaacacttgctattt-tctttttttcaaaatggtcat----acagttatgaggtgataaatcctgtagtgattttaattaacatttccctaatgattaatgatgttgagtatatttttatatccctgttggtcatttgcatgtcttcctgaaaaatatctatttaagaatttggccattttaaaattgagt-----------------------tatgtgtttatttgcttttgagttataggt----------gtttcttatatattttggatattaagcccttaacacatatacggttttcaaataatttctccagttctataggctgcctgttcactctgtt----gtttccttttttgcacagaagcattttaccttgat
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5812850 506 +  72422247 attattttggaaaaatgcccacaagtgggattgctgcatcatatgggtaggtctattttttaatgttttgaggaccctctatactgtttgccatagtggctctaccattttacattcctactgacagtacatagggttctaattcaatttctccacatcttcatcaacacttgctattt-tctttttttaaaaatggtcat----agagttatgaggtgataaatcctgttgtgattttaattagcatttccctgatgattaatgatggtgagtatctttttatatcactgttggtcatttgtatgtcttcctgaaaaatatctatttaagaatttggccatttttaaattgggt-----------------------tatgtgtttatttgcttttgagttatagat----------gtttcttatatattttggatattaatcccttagcacgtacatggttttcaaattttttttccaattatgtaggctgcctgttcactctgtt----gtttccttttttgcaaagaagcattttatcttgat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53532797 505 + 121039945 attattttggaaaaatgcccacaagtgggattgctgcatcatat-ggtaggtctattttttaatgttttgaggaccctccatactgttttccataatgactctatcattttacattcctactgacggtacatagggttccaattcaatttctccacatcttcatcaatacttgctattt-tctttttttaaaaatggtcat----acagttatgaggtgataaatcctattgtgattttaattagcatttccctgatgattaatgatgttgagtatcttttcatatccctattggtcatttgcatgtcttcctgaaaaatatctatttaagaacttggacatttttaaattgggt-----------------------tatttgtttatttgcttttgagttataggt----------gtttcttatatattttggatattaagccctcagcacatatatggttttcaaatattttctccaattctgtaggctgcctgttcactctgtt----gtttccttttttgcacagaagcattttatcttgat
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147862541 504 - 171882078 attattttggaaaaatgcccacaagtgggattgctgcatcatat-ggtaggtctatttttcaatcttttgaggaccctccgtactgttttccatagtggctctaccattttacattcctactgacagtacatagtgttccaattcaatttcttcacatcttcatcaacacttgctattt-ttattttttt-aagtggtcat----acagttatgaggtgataaatcctattgtgattttaattggaatttccctgatgattaatgatgttgagtatcttttcatatccctgttggtcatttgcatgtcttcctgcaaaatatctatttaagaacttggccatttttaaattgggt-----------------------tatttatttatttgcttttgagttataggt----------gtttcttatatattttggatattaagcccttagcacatatatggttttcaaatattttctccaattctgtaggctgcctgttcactcagtt----gtttcctttattgcacagaagcattttatctcgac
i macFas5.chr7                 C 0 C 0
s calJac3.chr10                107986351 482 - 132174527 attgttttggaaaaa--cccacaagtgggattgctgca-------------tctattttttaatgttttgagaaccctccatgatgttttccatagtgactgtaccattttacattcctactgacagtacacaggattccaattcaacttttccacttcttcatcaacac------att-atttttttaaataacgcttat----gcagttatgaggtgataaatgctattgtgattttaatcagcatttccctgatgattaataatgttgagtatcttttcatatacctgttggtcatttgtatgtcttcctgaaaaatgcctatttaagaa-ttggacattttaaaattggat-----------------------t-tttttttctttgcttctgagttacaggt----------atttcttatatattttagatattatacccttatcacatatatggttttcaaataacttctccaattctgtaggctgcctgttcactctatt-----tactttttattgcccagaagcattttatcttgat
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26796169 537 -  40214260 aatactttggataaatactcacaggtgggattgtgggatcagat-attatttctgctttt-aatttttgtaggaacctccatactgttttccatagctgctgtgccattttacattcccaccaacagtgcacaagggttccact---tttgtctacattcttactaatatttattttctgttttttttttataatgtccatcctaacaggtgtgatata--aaatctcattgtggttttgatttgcatttccctgatgattagtgatggtgagcatttttaaatgtatctg-tggctgtttgtatgtctt--ggagaaatgactattcaagtattt-ctcatgtttaaattgattatgtgtgtatgcatgcatgtatgtatgtatgtatatatatgtattttataaactgagtttgcagttctttatatactttgaatattcaccccttgtcatatatgtgggttgcaaatattttcttatattccagaggttgcctttttactttgttgattgttttctttattgtacagtaaccttttattttgat
i canFam3.chr30                I 168 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58774724 781 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=2800.000000
s hg38.chr14_KI270725v1_random    148556 1 +    172810 g
s panTro4.chrUn_GL393505          287910 1 +   1195001 g
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58775505 1 + 158137892 g
i gorGor3.chr7                 I 781 I 838
s ponAbe2.chrUn                  5813356 1 +  72422247 g
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53533302 1 + 121039945 g
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147863045 1 - 171882078 g
i macFas5.chr7                 C 0 C 0
s calJac3.chr10                107986833 1 - 132174527 g
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26796706 1 -  40214260 g
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=488969.000000
s hg38.chr14_KI270725v1_random    148557 320 +    172810 taatcaccctaacctatttttgcttttgttgcctgtgcttttggtatcaaatccaaggaattattgccacgaccaatgtgataaagcctttctttatgttttcttgt---agttttacagctttagttcttacatttaagtcttcaatccatttggagttaacatttgtgaacagttttaagataacggttcactttcattcttttgcatatggatatccagttttcccaacaatatttgttgaagaaattatcctttctccattgtatagttttggcaccctcgtcaaagatcatttgactatatgcatgtgggtttatttc
s panTro4.chrUn_GL393505          287911 322 +   1195001 taatcaccctaacctatttttgctttcgttgcctgtgcttttggtgtcaaatccaaggaattattgccacgaccaatgtgataaaggctttctttatgttttcttgtaggagttttacagcttttgttattacatttaagtcttcaatccatttggagttaacatttgtgaatag-tgtaagataagggttcactttcattcttttgcatatgaatatccagttttcccaacaatatttgttgaagaaattatcctttctccattgtatagttttggcaccctcgtcaaagatcatttgactatatgcatgtgggtttatttc
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5813357 322 +  72422247 taatcatcctaacctatttttgctttggttgcctgtgcttttggtgtcaaatccaaggaattattgccacgaccaatgtgataaaggctttctttatgttttcttgtagcagttttacagctttagttcttacattgaagtcttcaatccatttggagttaacatttgtgaacag-tgtaagataagggttcactttcattcttttgcataaggatatccagttttcccaacaatatttgtagaagaaattatcctttctccattgtatagttttggcaccctcgtcaaagatcatttgactatatgcatgtgggtttatttc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53533303 322 + 121039945 taatcactctaacctatttttgctttggttgcctgtgcttttggtgtcaaatccaaggaattattgccacgaccaatgggataaagcctttctttatgttttcttgtaggagttttacagctttaggtcttacatttaagtcttcaatccatttggagttaacatttgtgaacag-tgtaagataagggttccctttcattcttttgtatatggatatccagttttcccaacaatatttgttaaaaaaaatatcctttctccatcgtatagttttggcaccctcatcaaagatcatttgactatatgcatgtgggtttatttc
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147863046 322 - 171882078 taatcactctaacctatttttgctttggttgcctgtgcttttggtgtcaaatccaaggaattattgccacgactaatgggataaagcctttctttatgttttcttgtaggagttttacagctttaggccttacatttaagtctttaatccatttggagttagcatttttgaacag-tgtaagataagggttcgctttcattctttggcatatgtatatccagttttctcaacaatatttgttgaagaaattatcctttctccattgtgcagttttggcaccctcatcaaagatcatttgactatatgcttgtgggtttacttc
i macFas5.chr7                 C 0 C 0
s calJac3.chr10                107986834 322 - 132174527 taatccctctaacctatttttgctttggttgcctgtgcttttggtatcaaatccaaggaattattgccaaggccaatgtgataaagcctttctttatgttttctttcaggagttttacagttttaggtcttacatttaagtctttaatccatttggagttaacatttgtgaccag-tgtaagataagggttcactttcattcttttgcatatggatatccagttttcccaaaacaatttgctgaagaaactatcctttctccattgtgtagtctttgcactctcatcaaagatcatttgaccaaaagcatgtgggtttatttc
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26796707 313 -  40214260 tggtc-cttttgtctgtttttgtttt-gttgtttgtgcttttgatgttatatccaagaaatctttgccacaaccaatgctatgaagttttttgct-tgttttcttctagaagttttatagttttaggtcccatgtttaagtctttattccattttaaattgatttttatgtatgg-t-----ataagggtccaatttcattcttctgcatttggatgt-agtttttctcaacatgttttgttgaaaaaactatcctttctccattatgtagtcttggaaccctcatcaaagatcagttggccatatatgaatgggtttatttc
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=1939.000000
s hg38.chr14_KI270725v1_random    148877 10 +    172810 tgggcttgct
s panTro4.chrUn_GL393505          288233 10 +   1195001 tgggcctgct
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5813679 10 +  72422247 tgggcttgct
i ponAbe2.chrUn                C 0 I 49
s nomLeu3.chr6                  53533625  5 + 121039945 tgggc-----
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147863368  6 - 171882078 tgggct----
i macFas5.chr7                 C 0 C 0
s canFam3.chr30                 26797020 10 -  40214260 tcgactctat
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e calJac3.chr10                107987156  0 - 132174527 C
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=-405.000000
s hg38.chr14_KI270725v1_random    148887 8 +    172810 ----ttctttcc
s panTro4.chrUn_GL393505          288243 4 +   1195001 ----ttct----
i panTro4.chrUn_GL393505       C 0 C 0
s canFam3.chr30                 26797030 8 -  40214260 tcagttcc----
i canFam3.chr30                C 0 I 3028
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e calJac3.chr10                107987156 0 - 132174527 C
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I
e macFas5.chr7                 147863374 0 - 171882078 C
e nomLeu3.chr6                  53533630 0 + 121039945 C
e ponAbe2.chrUn                  5813689 49 +  72422247 I

a score=-3644.000000
s hg38.chr14_KI270725v1_random    148895 98 +    172810 ttccttccttccttccttccttccttccttccttccttccttccttctttctttctttctttctttctttctttctttctttctttctttcttatttc
s panTro4.chrUn_GL393505          288247 39 +   1195001 --------------------------------------------ttctttctttctttctttctttctttctttctttc---------------tttc
i panTro4.chrUn_GL393505       C 0 C 0
s nomLeu3.chr6                  53533630 22 + 121039945 -------------------------------------------------------tttctttctctttttttttttt---------------------
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147863374 11 - 171882078 ---------------------------------------------------------------ttttttttttt------------------------
i macFas5.chr7                 C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e calJac3.chr10                107987156  0 - 132174527 C
e chlSab2.chr26                 36178183 989 +  58131712 I
e papAnu2.chr7                 140789297 3502 - 162156779 I
e ponAbe2.chrUn                  5813689 49 +  72422247 I

a score=3523.000000
s hg38.chr14_KI270725v1_random    148993 8 +    172810 tttctttc
s panTro4.chrUn_GL393505          288286 8 +   1195001 tttctttt
i panTro4.chrUn_GL393505       C 0 C 0
s macFas5.chr7                 147863385 8 - 171882078 tttttttt
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36179172 8 +  58131712 tttttttt
i chlSab2.chr26                I 989 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e calJac3.chr10                107987156 0 - 132174527 C
e papAnu2.chr7                 140789297 3502 - 162156779 I
e nomLeu3.chr6                  53533652 0 + 121039945 C
e ponAbe2.chrUn                  5813689 49 +  72422247 I

a score=82597.000000
s hg38.chr14_KI270725v1_random    149001 77 +    172810 tttttgagatggagtcttgctctgtaaccaaggcgggagtgcagtggtgtgatcttggctcactgcaacctcttcct
s panTro4.chrUn_GL393505          288294 77 +   1195001 tttttgagatggagtcttgctctgtaaccaaggcgggagtgcagtggtgtgatcttggctcactgcaacctcttcct
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5813738 77 +  72422247 tatttgagatggagtcttgctctgtaacccaggtgggagtgcagtggtgtgatcttggctcactgcaacctcttcct
i ponAbe2.chrUn                I 49 C 0
s nomLeu3.chr6                  53533652 77 + 121039945 tttttgagatgaagtcttgctctgtcacccaggtgggagtgcagtggtgtgatctcggctcactgcaacctcttcct
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147863393 63 - 171882078 ttttggagatggagttttgctcagtcacccaggtgggagtgcagtggtgccatttcggctcac--------------
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36179180 77 +  58131712 tttttgagatggagttttgctcagtcacccaggcgggagtgcggtggtgccatctcggctcactgcaacctcttcga
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e rheMac3.chr7                 145872044 1054 - 170124641 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e calJac3.chr10                107987156  0 - 132174527 C
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=301956.000000
s hg38.chr14_KI270725v1_random    149078 173 +    172810 cctgggttcaagcgattctcctacctcagcctcccaagtagctggaattacaggtgcccataaccatgcccagctaatttttgtattttttcatagagacggggtttcaccatgttagccaggctggtcttgaactcccgaccttaggtgatctgcccgccttggcctcccag
s panTro4.chrUn_GL393505          288371 173 +   1195001 cctgggttcaagcgattctcctacctcagcctcctgagtagctggaattacaggtgcccataaccatgcccagctaatttttgtattttttcatagagacggggtttcaccatgttagccaggctggttttgaactcctgaccttaggtgatctgcccgccttggcctcccag
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5813815 173 +  72422247 cctgggttcaagcgattctgctacctcagcctcccgagtagctggaattacaggtgcccacaaccatgcccagctaatttttgtattttttcatagagactggatttcaccatgttagccaggctggtctcaaactcccgaccttaggtgatccacccgccttggcctcccaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53533729 173 + 121039945 cctgggttcaagcgattctcccacctcagccttccaagtagctgggattacaggcacccacaaccacacccagctaatttttgtattttttcacagagatggggtttcaccatgttagccaggcaggtcttgaactcctgaccttaggtgatccacccgccttggcctcccaa
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145873098 173 - 170124641 cctgggttcaagcgattatcctacctcagcctcctgagtagctgagattacaggcacccaccaccacaccaagctaatttctgtattttttcatagagatggggtttcaccatgttagccatgctggtcttgaactgctgaccttaggtgatccacccgcctcggcctcccaa
i rheMac3.chr7                 I 1054 C 0
s macFas5.chr7                 147863456 172 - 171882078 -ctgggttcaagcgattatcctacctcagcctcctgagtagctgagattacaggcacccaccaccacaccaagctaatttctgtattttttcatagagatggggtttcaccatgttagccatgctggtcttgaactgctgaccttaggtgatccacccgcctcggcctcccaa
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36179257 173 +  58131712 cctgggttcaagcgattctcctacctcagcctcctgagtagctgagattacaggcacccaccaccacaccaagctaatttctgtattttttcatagagatggggtttcaccatgttagccaggctggtcttgaactgctgaccttaggtgatccacccgcctaggcctcccaa
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e calJac3.chr10                107987156   0 - 132174527 C
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=193106.000000
s hg38.chr14_KI270725v1_random    149251 109 +    172810 tgggctttctattctgttccaataatccattctgttccattcatctatatgattagttttacattaatatcacactattgcgattgctgtagctttgtagtatatttca
s panTro4.chrUn_GL393505          288544 109 +   1195001 tgggctttctattctgttccactaatccattctgttccattcatctatatgattagttttacgttaatatcacactattgggattgctgtagatttgtagtatatttca
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5813988 109 +  72422247 tgggctttctattctgttccactaatccattcttttccattcatctgtatgattagttttatgttaatatcacactattgggattgctgtagctttgtagtatatttca
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53533902 109 + 121039945 tggactttctattctgttccactaatctattctgttccattcatctatatgattaattttatgttaatatgacactattgggattgctgtagctttgtagtacatttca
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145873271  83 - 170124641 tgggctttctattctg------------------ttccattcatctatatgacgaattttatgttaa--------tattgggattgctgcagctttgtagtatatttca
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147863628  83 - 171882078 tgggctttctattctg------------------ttccattcatctatatgacgaattttatgttaa--------tattgggattgctgcagctttgtagtatatttca
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36179430  83 +  58131712 tgggctttctattctg------------------ttccattcatctatatgacgaattttatgttaa--------tattgggattgctgcagctttgtagtatatttca
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107987156 109 - 132174527 tgggctttctattctgatccactggtctattctgttccattcatctatatgaataattttatgttaatatcacacaattgggattgctgtagctttgtaatatatttca
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9115755 3135 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=4853.000000
s hg38.chr14_KI270725v1_random    149360 2 +    172810 aa
s panTro4.chrUn_GL393505          288653 2 +   1195001 aa
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9118890 2 -  12672142 AA
i panPan1.JH650621             I 3135 I 4414
s ponAbe2.chrUn                  5814097 2 +  72422247 aa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53534011 2 + 121039945 aa
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145873354 2 - 170124641 ga
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147863711 2 - 171882078 ga
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36179513 2 +  58131712 aa
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107987265 2 - 132174527 aa
i calJac3.chr10                C 0 C 0
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=101920.000000
s hg38.chr14_KI270725v1_random    149362 44 +    172810 gtcagaaaatgtgaggcctctaac--tgtttctctttcttaggatt
s panTro4.chrUn_GL393505          288655 44 +   1195001 gtcagaaaatgtgaggcctctaag--tgtttctctttctaaggatt
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5814099 46 +  72422247 gtcagaaaatgtgaagcctctaactttgtttttctttcttaggatt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53534013 46 + 121039945 gtcagaaaatgtgaggcctctaactttgtttttctttcttaggatt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145873356 46 - 170124641 gccagaaaatgtgaggcctctagctttgtttttctttcttaggatt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147863713 46 - 171882078 gccagaaaatgtgaggcctctaactttgtttttctttcttaggatt
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36179515 46 +  58131712 gccagaaaatgtgaggcctctaactttgtttttctttcttaggatt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107987267 46 - 132174527 atcagaatatgtgagacctctaactttgtttttctttcttaggatt
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58775506 838 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=2800.000000
s hg38.chr14_KI270725v1_random    149406 1 +    172810 g
s gorGor3.chr7                  58776344 1 + 158137892 g
i gorGor3.chr7                 I 838 I 428
s ponAbe2.chrUn                  5814145 1 +  72422247 g
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53534059 1 + 121039945 g
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145873402 1 - 170124641 g
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147863759 1 - 171882078 g
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36179561 1 +  58131712 g
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107987313 1 - 132174527 g
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I
e panTro4.chrUn_GL393505          288699 0 +   1195001 C

a score=912430.000000
s hg38.chr14_KI270725v1_random    149407 428 +    172810 ttttggatattcagggtccgttgtggttccatatggattttagaattgtcctttctatttctctaaaattatcattggaatttatacaattccaagggattacatcaaatctgtaaatttctttggctagtattagaatttaaaaatattctttgaattcacaaaaatgagatggctttccatttatttgtgtcttccttaatttctttcagcaatattttgcagtattcagtgtacaagtct----------ttcccc-caccggctaagtttattccaaagtattttattcagtttgatgccatt----gcaaatggattgttttcttaatttcc-ttttcagaatgtttgctgtttgtg----------------tttttttgaatctttactttgaatcctgcaactttgctgaattaattttattagttccaag-agctttttgttgaatctttag
s panTro4.chrUn_GL393505          288699 427 +   1195001 tttttgatattcagggtccgttgtgg-cccatatggattttagaactgtcctttctatttctctaaaattatcattggaatttatacaattccaagggattacattaaatctgtaaattgctttggctagtattagaatttaaaaatattctttcaattcatggaaatgagatggcttttcatttacttgtgtcttccttaacttctttcaacaatactttgcagtattcagtgtacaattct----------ttcccc-cactggctaagtttattccaaagtattttattcattttgatgccatt----gtaaatggattattttcttaatttcc-ttttcagaatgtttgctgtttgtg----------------tttttttgaatctttactttgaatcctgcaactttgctgaattcattttattagttctaag-agctttttgttgaatcttttg
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5814146 421 +  72422247 ttttggatattcagggtccgttgtggttccatatggattttagaattgtcctttctatttctctaaaattatcattggaatttttat-------agagattacatcaaatctgtaaattgctttggctagtatcagaatttaaaaatattctttcaattcatgaaaatcagatggctttccatttacttgtgtcttccttaacttctttcagcaatattttgcagtattcagtgtacaagtct----------ttcccc-caccgtctaagtttattcctacgtattttattcattttgatgccatt----gcaattggattgttttcttaatttcc-ttttcagaatgtttgctgtttgtg----------------tttttttgaatctttactttgaatcctgcaactttgttgaattcattttattagttctaag-agctgtttgttgaatctttag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53534060 433 + 121039945 ttttggatattcagggtccgttgtggttttatatggattttagaattgtcctttctatttctctaaaattatcattggaatttttat--------gggattacatcaaatctgtaaattgctttggctagtattagaatttaaaaatattctttcaattcat-aaaatgagatgtctttccatttacttgtgtcttccttaatttctttcagcaatgttttgcagtattcagtgtacaagtctcctgcgcccccctccc-caccggctaagtatattcctaattattttattcattttgatgccattgcaagcaaacggattgctttcttaatttcc-ttttcagaatgttcgctatttgtg----------------tttttttgaatctttactttgaatcctgcaactttgttgaattcattttattagttctaag-aactttttgttgaatctttag
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145873403 419 - 170124641 ttttggatattcagggtccactgtggttccatatggattttagaattgtcttttctatttctgtaaaattatcattggaatttttat-------agggattacatcaaatctgtacattgctttggctagtattagaatttaaaaatattctttcaattcatgaaaatgagatatctttccatttacttgtgtcttccttaatttctttcagcaatgttttgcagtattcagtgtacaagtct----------ttcccctccctggctgagtttattcctaagtattttattcattttgatgctatt----gcaaatggattgctttcttattttcctttttcagaatgtttgctgt---------------------gttttttgaatctttactttgaatcctgcagctttgttgaattcattttattagttctaagaaattttttgttgaatctttag
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147863760 419 - 171882078 ttttggatattcagggtccactgtggttccatatggattttagaattgtcttttctatttctgtaaaattatcattggaatttttat-------agggattacatcaaatctgtacattgctttggctagtattagaatttaaaaatattctttcaattcatgaaaatgagatatctttccatttacttgtgtcttccttaatttctttcagcaatgttttgcagtattcagtgtacaagtct----------ttcccctccctggctaagtttattcctaagtattttattcattttgatgctatt----gcaaatggattgctttcttattttcctttttcagaatgtttgctgt---------------------gttttttgaatctttactttgaatcctgcaactttgttgaattcattttattagttctaagaaattttttgttgaatctttag
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36179562 419 +  58131712 ttttggatattcagggtccactgtggttccatatggattttagaattgtcttttctatttctgtaaaattatcattggaatttttat-------agggattacatcaaatctgtacattgctttggctagtattagaatttaaaaatattctttcaattcatgaaaatgagatacctttccatttacttgtgtcttccttaattcctttcagcaatgttttgcagtattcagtgtacaagtct----------ttcccctccctggctaagtttattcctaagtattttattcattttgatgctatt----gcaaatggatggctttcttattttcctttttcagaatgtttgcggt---------------------gttttttgaatctttactttgaatcctgcaactttgttgaattgattttattagttctaagaaattttttgttgaatctttag
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107987314 435 - 132174527 ttttggacattcagggtcccttgttgttccatatgaattttagaactgtcttttttatttctgtaaaattatcattgaaatttttat-------agggattatatcaaacctgtaaattgcattggctagtattagaatttaaaaatattctttcaatccatgaaaaggggatgtctttccatttacttgtgtcttccttaatttctttcagcaatgttttgcagtattcagtgtacaagtct----------ttcccc-tcc---ctaagtttattcctaagtattttattcattttgatgccatt----gcaaatggattgctttcttgatttcc-ttttcagaatgtttgctgtttgtggtttttgtttttgttttttttttgaatctttactttgaatcctgaaactttgtggaattatttttattagttccaagaatttttctgttgaatctttat
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58776345 428 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=2218211.000000
s hg38.chr14_KI270725v1_random    149835 813 +    172810 ggtttttt--------t-aatatataagatgatgttttctgggaatagaaaaaattttacttacttcttcctttccaatttggatgcc-tttatatctttttcttgctgaattattttagctaggactttatgtacttcataaaggcgtccttgccttgttcctgatcctgatcttagaagaagagatttcagtttttcttcattaatatggtgtgaaatgtggg-tttttacatatggcctttattctgttggaataatttc-tttctattcctattttttcaagtgtttttctaacgagagaatgttgaatttcatcaaatgatctttctccatctacggagatgaacacgttatttgag----ttattttgttaatgtggcatattatatt----gatttgcacatgttgaacccttcttgcattccaggaaca-aatccatcataattatggtggatgatactttatagtgctgttgaattcaatttactggtatttgttgagga-ttttgcatctacattcattaggaatatttaa---tt----ttttttcttgtagcaccattgtctggctttgatattagggttatactagcttcacaaaaagagtttagaatagttctttcttctttaactttttaggaatgtttgagaaatattggcattaattcttccttaaatgttggcagaattctctagtaaagtcatctgcacctgaga-ttttctttgttggaagatttttgattactaatttaaacaccttactagctatagatttgttcatattttgtatttctttttgattcagtgttgtttgttgtatatttccagtaa--tttg-
s panTro4.chrUn_GL393505          289126 808 +   1195001 ggtttttt--------t--atgtataagatgatgttttctgtgaatagaaaaaat-----ttacttcttcctttccaatttggatgccttttata-ctttttctagcttaattattttagctaggactttatgtacttcataaaggcatccttgctttgttcctgatcctgatcttagaagaagggttttcaatttttcttcattaacatgatgtgagctgtggg-tttttacatatggcctttattctgttggaataatttc-cctctattcctattttttcaagtgtttttctaacgagagaatgttgaatttcgtcaaatgctctttctccatctacagagatgaacacgttattttaa----ttgttttgttaatgtggcatattatatt----gattttcacatgttgaaccgttcttgcattccaggaaaagaatccatcataattatggtggatgatactttatactgctgttgaattcaatttgctggtatttgttgagga-ttttgcatctacattcattaggaatattttt---tt----ttttttcttatagcgccattgtctggctttgatattagggttatgctagcttctcaaaaagagtttagaattgttctttcttctttaattttttaggaatgtttgagaaatattggcattaattcttccttaaatgttggcagaaatctctagtaaagtcacctgcacctgaga-tattctttgctggaagatttttgattactaatttaaacaccttattggctacagatttgttcatattttgtatttcttcttggttcagtgttgtgggttgtatatttccagtaa--tttg-
i panTro4.chrUn_GL393505       C 0 I 1
s gorGor3.chr7                  58776773 812 + 158137892 ggtttttt--------a--atatataagatgatgttttctgtgaatagaaaaaattttacttacttcttcctttccaatttggatgcc-tttatatctttttcttgctgaattattttagctaggactttatgtacttcataaaggcgtccttgccttgttcctgatcctgatcttagaagaagagatttcagtttttcttcattaatatggtgtgaactgtggg-tttttacatatggcctttattctgttggaataatttc-tttctattcctattttttcaagtgtttttctaacgagagaatgttgaatttcatcaaatgctctttctccatctacggagatgaacacgttatttgaa----ttgttttgttaatgtggcatattatatt----gatttgcacatgttgaacccttcttgcattccaggaaca-aatccatcataattatggtggatgatactttatagtgctgttgaattcaatttactggtatttgttgagga-ttttgcatctacattcattaggaatatttaa---tt----ttttttattgtagcaccattgtctggctttgatattagggttatactagcttcacaaaaagagtttagaattgttctttcttctttaactttttaggaatgtttgagaaatattggcattaattcttccttaaatgttggcagaattctctagtaaagtcatctgcgcctgaga-ttttctttgttggaagatttttgattactaatttaaacaccttactagctatagacttgttcatattttgtatttcttcttgattcagtgttgtttgttgtatatttccagtaa--tttg-
i gorGor3.chr7                 I 428 C 0
s ponAbe2.chrUn                  5814567 811 +  72422247 ggtttttt--------ttaatatataagatgatgttttctgtgaatagagaaaatt----ttacttcttcctttccaatttggatgccttttatatctttttcttgcttaattattttagctaggactttatgtacttcataaaggcatccttgccttgttcctgatcctgatcttagaagaagagatttcagtttttcttcattaatatgatgtgaactgtggg-tttttacatatggcctttattctgttggaataatttc-cttctattcctattttttcaagtgtttttctaatgagagaatgttgaatttcatcaaatgctctttctccatctatgaagatgatgatgttattttaa----ttgttttgttaaagtggcctattatatt----gattctcacatgttgaacacttcttgcatttcaggaaca-aatccatcataattatggtgaatgatactttacagtgctattgaattcattttgctggtatttgttgagga-ttttgcatctacattcattaagaatctttaa---tt----ctttttcttgtagcgccattgtctcgctttgatattagggttgtgctagcttcacaaaaagagtttagaatttttctttcttctttaattttttaggaatgtttgagaaatattgccattaattcttccttaaatattggcagaattctctagtaaagtcacctgtgcctgaga-ttttctttgctggaagatttttgattactaatttgaataccttactagctatagatttgttcatattttgtatttcttcttgattcagtgttgtaagttgtgtatttccagtaa--tttg-
i ponAbe2.chrUn                C 0 I 1
s nomLeu3.chr6                  53534493 808 + 121039945 ggtctttt--------t--atatataagatgatgttttctgtgaatagagaaaatt----ttacttcttcctttccaatttggatgtcttttatatctttttcttgcttaattattttagctaggactttatgtacttcataaaggcatccttgccttgttcctgatgctgatcttagaagaagagatttcagtttttcttcattcatatgatgtgagctttggg-tttttacatatggcctttattctgtaggaataatttc-cttctattcctattttttcaagtgtttttctaaggaaagaatgttgaatttcaccaaatgctctttctccatctacggagatgaacatgtgattttaa----ttgttttgttaatgtggcatattatatt----gattttcacatgttgaacccttcttgcattccaggaata-aatccatcgtaattatggtggatgatactttaaagtgctgttgaattcaatttgctgatatttgttgagga-ttttgcatctacattcattaggaatatttaa---tt----ttttttcttgtagtgccattgtctggttttgatattagggttatgctagcttcacaaaaagagtttagaattgttccttcttctttaattttttatgaatgtttgagaaatattggcattaattcttccttaaatgttggcagaattctctagtaaagtcatctgcacctgaga-ttttctttgctgaaagatttttgattac-aatttaaacaccttactagctatagatttgttcatattttgtatttcttcttgattcagtgttgtaggatgtatatttccagtaa--tttg-
i nomLeu3.chr6                 C 0 I 1
s rheMac3.chr7                 145873822 804 - 170124641 ggtttttt--------a----atatatgatgatgttttcggtgaatagagaaaatt----ttacttcttcctttccaatttggatgccttttatatctttttcttgcttaattattttagctgggactttatgtacgtcataaaggcatccttgccttgttcctgatcc--atcttagaagaagatatttcagtttttcttcattaatattacgtgagctgcgggctttttacatatggcctttattctgttggaataatttc-cttctattcctgttttttcaagtgtttttctcatgaaagaatgttgaatttcgtcaaatgctctttttccatctacggagatgaacatgtgattttaatcatttgttttgttaatgtggtttattatatt----gattttcaca---cgaactcttctt--------agaata-aatccatcataattatggtggatgatactttaaagtgctgttgaattcaatttgctggtatttgttgtgga-ttttgcatctacgttcattaggaatatttaa-tttt----ttttttcttgtagtgccattgtctggctttgatattagggttatgctagattcacaaaaagagtttagaattgttctttcttctttagttttttaggaatgtttgagaaatattggcattaattcttccttaaatgttggcagaattctctagcaaagtcatctacacctgagatttttctttgctggaagatttttgattactgatttaaacaccttactagctagagatttgttcatattttgtatttcttcttgattcagtgttataggttgtatatttccagtaatctctg-
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147864179 804 - 171882078 ggtttttt--------a----atatatgatgatgttttcggtgaatagagaaaatt----ttacttcttcctttccaatttggatgccttttatatctttttcttgcttaattattttagctgggactttatgtacgtcataaaggcatccttgccttgttcctgatcc--atcttagaagaagatatttcagtttttcttcattaatattacgtgagctgcgggctttttacatatggcctttattctgttggaataatttc-cttctattcctgttttttcaagtgtttttctcatgaaagaatgttgaatttcgtcaaatgctctttttccatctacggagatgaacatgtgattttaatcatttgttttgttaatgtggtttattatatt----gattttcaca---cgaactcttctt--------agaata-aatccatcataattatggtggatgatactttaaagtgctgttgaattcaatttgctggtatttgttgtgga-ttttgcatctacgttcattaggaatatttaa-tttt----ttttttcttgtagtgccattgtctggctttgatattagggttatgctagattcacaaaaagagtttagaattgttctttcttctttagttttttaggaatgtttgagaaatattggcattaattcttccttaaatgttggcagaattctctagcaaagtcatctacacctgagatttttctttgctggaagatttttgattactgatttaaacaccttactagctagagatttgttcatattttgtatttcttcttgattcagtgttataggttgtatatttccagtaatctctg-
i macFas5.chr7                 C 0 I 1
s chlSab2.chr26                 36179981 813 +  58131712 cgtttttttttttatat----atataagatgatgttttctgtgaatagagaaaatt----ttacttcttcctttccaatttggatgccttttatatctttttcttgcttaattattttagctgggactttatgtacttcataaaggcatccttgccttgttcctgatcc--atcttagaagaagatatttcagtttttcttcattaatattacgtgagctgtgggctttttacatatgccctttattctgttggaataatttc-cttctattcctgttttttcaagtgtttttctcatgaaagaatgttgaatttcctcaaatactctttctccatctatggaggtgaacatgtgattttaattatttgttttgttaatgtggtttattatatt----gattttcaca---tgaacccttctt--------ggacta-aatccatcataattatagcggatgatactttaaagtgctgttgaattcaatttgctggtatttgttgtgga-tcttgcatctacattcattaggaatatttaattttt----ttttttcttgtagtgccattgtctggctttgatattggggttacgctagattcacaaaaagagtttagaattgttctttcttctttagttttttaggaatgtctgagaaatattggcattaattcttccttaaatgttagcagaattctctagcaaagtcatctgcgcctgagatttttctttgcaggaagatttttgattactgatttaaacaccttactagctagagatttgttcatattttgtatttcttcttgattcggtgttataggttgtgtatttccagtaatctctg-
i chlSab2.chr26                C 0 I 1
s calJac3.chr10                107987749 815 - 132174527 -gattttc--------t--atacataagataatgttttctgtgaatagagaaagtt----ttacttcttcctttctaatttggatgccttttatatctttttcttgcttaattattttatctaggactatatgtacttcat-aaggcaccctaactttattcctc------atcttagaagaagagatttcagtttt--ttcttcactgtgatgtgagctgtgggctttttatatatgtcctttattctgttggaataattttatttctattcctattttttcagttgtttttatcatgaaagaatgttgaatttggtcaaatgctttttctccagctatggagatgaacaagtgattttaattatttgtttttttaatgtggtatatcatattgatggattttcacatgttgtacccttcttgcattccaggaata-aattcttcatgattatggtggatgatattttaaagtgctgttgaaatcaatttgctggtatttgctgaggatttttgcatctac-ttaattaggaatattcat---tgtaaattttttcttgtagtgccactgtatggctttgacattggcattatgctagcttcacaaaaggagtttaaaattgttctttcttctttaa-tttttaggagcatttgagaaatattggcattaattcttccttaaatgctggcagaattctctagtaaagtcatctgcacctgaga-ttttctttgctggaagatatttgattactgatttaaacaccttactagttatagatttgtttgtattttgtattttttcttgagtcagtgttgtaggttgtatatttccagtaatttctga
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10772710 12422 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=4095.000000
s hg38.chr14_KI270725v1_random    150648 1 +    172810 t
s panTro4.chrUn_GL393505          289935 1 +   1195001 t
i panTro4.chrUn_GL393505       I 1 C 0
s gorGor3.chr7                  58777585 1 + 158137892 t
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5815379 1 +  72422247 t
i ponAbe2.chrUn                I 1 C 0
s nomLeu3.chr6                  53535302 1 + 121039945 t
i nomLeu3.chr6                 I 1 C 0
s rheMac3.chr7                 145874627 1 - 170124641 t
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147864984 1 - 171882078 t
i macFas5.chr7                 I 1 C 0
s chlSab2.chr26                 36180795 1 +  58131712 t
i chlSab2.chr26                I 1 C 0
s calJac3.chr10                107988564 1 - 132174527 t
i calJac3.chr10                C 0 C 0
s saiBol1.JH378136              10785132 1 +  21366645 t
i saiBol1.JH378136             I 12422 I 4244
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=668299.000000
s hg38.chr14_KI270725v1_random    150649 250 +    172810 ttttttctaggttatccaattattaccataataattcacagcagtctctaataatctt-ttttatttctgtggcatcaattgcaatgtctactttttcatttttaattttatttggttgagtcttttctctttttaattgccatattccattgtatagtaataccacag--tttttttttaatctattcacttgcattggttctactttctggttataatgaaaatatgtgtgtgaaaatatcctttatttg-c
s panTro4.chrUn_GL393505          289936 250 +   1195001 ttttttctaggttacccaattactaccataatcattcacagcagtctcttataatcttcttttatttctgtggcatcaattgcaatatctactttttcatttttaattttatttggttgagtcttttctctttttaattgccatattccattgtatagtaatacgaca----ctttttaaaatctattcacttgcattggttctactttctggttataatgaaaatatgtgtgtgaaaatatcctttatttgaa
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58777586 250 + 158137892 ttttttctaggttatccaattactaccataatcattcacagcagtctcttataatcttttcttatttctgtggcatcaattgcaatgtctactttttcatttttaattttatttggttgagtcttttctctttttaattgccatattccattgtatagtaataccacag---ttttttttaatctattcacttgcattggttctacttgctggttataatgaaaatatgtgtgtgaaaatatcctttatttg-c
i gorGor3.chr7                 C 0 I 12556
s ponAbe2.chrUn                  5815380 250 +  72422247 ttttttctaggttatccaattaccaccataatcattcacagcagtctcttatcatctttttttattcctgtggcatcaattgcaatgtctactttttcatttttaattttatttggttgagtcttttctttttttaattgccatattccattgtatagtattaccacag---ttttttttaatctattcacttgcattggttctgctttctggttataatgaaaatatgtgtatgaaaatatcctttatttg-c
i ponAbe2.chrUn                C 0 I 1
s nomLeu3.chr6                  53535303 251 + 121039945 gtttttctaggttatccaattactaccataatcattcacagcagtctcttataatctt-ttttatttttgtggaatcaattgcaatgtctactttttcatttttaattttatttggctgagtcttttctctttttaattgccatattccattgtatagtaataccacag-ttttttttttaacctattcacttgccttggttctactttctggttataatgaaaatatgtgtgtgaaaacatcctttatttg-c
i nomLeu3.chr6                 C 0 I 1
s rheMac3.chr7                 145874628 246 - 170124641 ttgtttctaggttacccaattactactataatcattcacagcagtctcttacagtctt-ttttgtttctgtggcatcaatcgcaatgtctactttttcagtttta-----atttgactgagtcttttctctttttaattgccatattccactgtatagtaatacca-gttttttttttttaatctattcacttggattggttccactttctggttataatgaaaatatctgtgtgaaaagatcctttatttg-c
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147864985 247 - 171882078 ttgtttctaggttacccaattactactataatcattcacagcagtctcttacagtctt-ttttgtttctgtggcatcaatcgcaatgtctactttttcagtttta-----atttgactgagtcttttctctttttaattgccatattccactgtatagtaataccacagtttttttttttaatctattcacttggattggttccactttctggttataatgaaaatatctgtgtgaaaagatcctttatttg-c
i macFas5.chr7                 C 0 I 1
s chlSab2.chr26                 36180796 247 +  58131712 ttgtttctaggttacccagttactactataatcattcacagcagtctcttacagtctt-gtttatttctgtggcatcaatcgcaatgtctactttttcagtttta-----atttgactcagtcttttctctttttaattgccatattccattgtatagtaataccacagtttttttttttaatctattcacttggattggttccacttactggttataatgaaaatatctgtgtgaaaagatcctttatttg-c
i chlSab2.chr26                C 0 I 1
s calJac3.chr10                107988565 242 - 132174527 ttttttctaagttatccaattactatcatcattgttcatagcagtctcttgtaatctt----tatttctgtggcatcaattgtaatgtctcctttttcatttttaattttacttggtttaatcttttctctttt--attgccatattccattgtatagtaataccacag-----tttgtttatctgttcacttggattgcttctactttctagttattatgaaaatatgtgtgtaaaaatatgccttatttg-c
i calJac3.chr10                C 0 I 1
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=438126.000000
s hg38.chr14_KI270725v1_random    150899 159 +    172810 ttaatttttattatttccttccttttgctgggtttgggcttggttctt------ttttttagttccttgagttgtaaagttaggttgtttatttgagatctttcttcttttttaaggtaggcatttattgctataaatttccctctttagtactgcctttgctgc
s panTro4.chrUn_GL393505          290186 160 +   1195001 ttaatctttattatttccttccttttgctggatttgggcttagttctt-----ctttcttagttccttgagttgtaaagttaggttgtttatttgagatctttcttcttttttaaggtaagcatttattgctataaatttccctctttagtactgtctttgctgc
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58790392 160 + 158137892 ttaatctttattatttccttccttttgctgggtttgggcttagttctt-----cttttttagttccttgagttgtaaagttaggttgtttatttgagacctttcttcttttttaaggtaagcatttattgctataaatttccctctttagtactgcctttgctgc
i gorGor3.chr7                 I 12556 C 0
s ponAbe2.chrUn                  5815631 157 +  72422247 ttaatctttattatttccttccttttgctgggtttgggcttagttc--------ttttttagttccttgagttgtaaagttaggttttttatttgagatctttcttcttttttaaggtaggcatttattgctataaatttccctctttagtactgcctttgctgc
i ponAbe2.chrUn                I 1 C 0
s nomLeu3.chr6                  53535555 157 + 121039945 ttaatctttattattttcttccttttgctgggtttcggcttagttct-------ttttttagttccttg-gttgtaaagttagattgtttatttgagatgtttcttcttttttaaggtaggcatttattgctataaatttccctctttagtactgcctttgctgc
i nomLeu3.chr6                 I 1 C 0
s rheMac3.chr7                 145874875 155 - 170124641 tgaatctttattatttccttccttttgctgggtttgggcttagttctt-----tttttttagttccttgagttgtaaagtcaggtgg----tttgagatctttcttctgttttaaggtaggcatctattgctataaatttccctc-ttagtactgcctttgctgc
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147865233 155 - 171882078 tgaatctttattatttccttccttttgctgggtttgggcttagttctt-----tttttttagttccttgagttgtaaagtcaggtgg----tttgagatctttcttctgttttaaggtaggcatctattgctataaatttccctc-ttagtactgcctttgctgc
i macFas5.chr7                 I 1 C 0
s chlSab2.chr26                 36181044 154 +  58131712 tgaatctttattatttccttccttttgctgggtttgggcttagttc-t-----tttttttagttccttgagttgtaaagtcaggtgg----tttgagatctttcttctgttttaaggtaggcatttattgctataaatttccctc-ttagtactgcctttgctgc
i chlSab2.chr26                I 1 C 0
s calJac3.chr10                107988808 164 - 132174527 ttcatctttattatttccttccttttgctgggtttgggcttagtttgttcttatttttctagttccttgagttgaaaagttaggttgtatattggagatctttattcttttttaacgtaggcatttattgttataaacttccctc-ttagtactgcctttgctgc
i calJac3.chr10                I 1 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26797038 3028 -  40214260 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=142202.000000
s hg38.chr14_KI270725v1_random    151058 67 +    172810 atttctaag-ttttgctatg------------------ttgtg------ttttttta---------tttttttgtcagcttcttttctaatattctttttg---
s panTro4.chrUn_GL393505          290346 66 +   1195001 atttctaag-ttttgctatg------------------ttgt-------ttttttta---------tttttttgtcagcttgttttcttatattctttttg---
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58790552 67 + 158137892 atttctaag-ttttgctatg------------------ttgtg------ttttttta---------tttttttgtcagcttgttttctaatattctttttg---
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5815788 69 +  72422247 atttcaaagtttttgctatg------------------ttgtg------tttttaaa--------ttttttttgtcagcttgttttctaatattctttttg---
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53535712 73 + 121039945 atttctaag-ttttgctatg------------------ttgtgtgtggttttttttt---------tttttttgtcagcttgttttgtaacattcttgttg---
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875030 76 - 170124641 atttctaag-ttttgctatg------------------ttgtg------tgtgtgtgtgtgtgtgttgtttttgtcagcttgttttctaacattctttttg---
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147865388 76 - 171882078 atttctaag-ttttgctatg------------------ttgtg------tgtgtgtgtgtgtgtgttgtttttgtcagcttgttttctaacattctttttg---
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36181198 94 +  58131712 atttctaag-ttttgctatggtgtgtgtgtgtgtgtgtgtgtg------tgtgtgtgtgtgtgtgttgtttttgtcagcttgttttctaacattctttttg---
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107988972 62 - 132174527 attcctaag-ttttgctgtg-----------------------------tttttttt---------tttttttctcagcatgttttctaacattctttttg---
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26800066 65 -  40214260 atccctact-ctttactctt------------------ttgca------ctc--------------tgtttctttttgctcctctgactatatcatttcaaatg
i canFam3.chr30                I 3028 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e papAnu2.chr7                 140789297 3502 - 162156779 I

a score=251304.000000
s hg38.chr14_KI270725v1_random    151125 66 +    172810 atttcttctttgactcattggttgttcaatagtatgttgtttaatttccatatatttg----taaatgtt
s panTro4.chrUn_GL393505          290412 64 +   1195001 atttcttctttgactcattggttgttcaatagtaag-tgtttaatttccatata-ttg----taaatgtt
i panTro4.chrUn_GL393505       C 0 M 296
s gorGor3.chr7                  58790619 66 + 158137892 atttcttctttgactcattggttgttcaatagtatgttgtttaatttccatatatttg----taaatgtt
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5815857 66 +  72422247 atttcttctttgactcattggctgttcaatagtatgttgtttaatttccatatatttg----taaatgtt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53535785 66 + 121039945 atttcttctttgactcattggttgttcaatagtatgttgtttaatttccatatgtttg----taaatgtt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875106 66 - 170124641 atttcttctttgactcattgattgttcaatagtatgttgtttaatctccatatatttg----taaatgtt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147865464 66 - 171882078 atttcttctttgactcattgattgttcaatagtatgttgtttaatctccatatatttg----taaatgtt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140792799 66 - 162156779 atttcttctttgactcattgaTTGTTCAatagtatgttgtttaatttccatatatttg----taaatgtt
i papAnu2.chr7                 I 3502 C 0
s chlSab2.chr26                 36181292 66 +  58131712 atttcttctttgactcattgatcgttcaatagtatgttgtttaatttccatatatttg----taaatgtt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107989034 66 - 132174527 atttcttctttgacccattggttgttcaatagtatgttgttttattttcacatgtttg----taaatgtt
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26800131 59 -  40214260 gtctgtatttgagttcattgattctt-----------tcttctatttgatcaaatctgatattgaatctt
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I

a score=441695.000000
s hg38.chr14_KI270725v1_random    151191 160 +    172810 ----tctgttttccttctactattgaatttttgcttcatcctacttttggtcaaaacaggttcttgatttcctttgtcttaattttgttaagactcgctt-tgtgacctaacatttgatctatcctggagaatgtGTCAGGATATGTCA---ctttgccagataattt
s gorGor3.chr7                  58790685 160 + 158137892 ----tccgttttctttctactattgaatttttgcttcatcctacttttggtcaaaacaggttcttgatttcctttgtcttaaatttgttaagacttgctt-tgtgacctaacatttgatctatcctggagaatgtGTCAGGATATGTCA---ctttgccagataattt
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5815923 160 +  72422247 ----tcagtttgccttctactattgaatttttgcttcatcctacttttggtcaaaacaggttcttgatttcctttgtcttaaatttgttaagacttgttt-tgtgacctaacatgtgatctatcctggagaatgtGTCAGGATATGTCA---Ctttgccagataattt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53535851 158 + 121039945 ----tcagttttccatctgctattgaatttttgcttcatcctatatttggtcaaaacagcttcttgatttcctttgtcttaaatttgttaagacttgttt-tgtgacctaacg--tgatctgtcctggagaatgtGTCAGGATATGTCA---Ctttgccagaaaattt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875172 160 - 170124641 ----tcagttttccttctactattgaatttttgcttcatcctatttttggtcaaaacagattcttgatttactttgtcttaaatgtgttaagacttattt-tgtgacctaacatgcgatctgtcctggagaatgtGTCAGGATATATCA---Ctttgccagataattt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147865530 160 - 171882078 ----tcagttttccttctactattgaatttttgcttcatcctatttttggtcaaaacagattcttgatttactttgtcttaaatgtgttaagacttattt-tgtgacctaacatgcgatctgtcctggagaatgtGTCAGGATATATCA---Ctttgccagataattt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140792865 160 - 162156779 ----tCAGTTTTCCTTCTACTATTGAATTTTTGCTTCATCCTATTTTTGGTCGAAACAGATTCTTGATTTACTTTGTCTTAAatgtgttaagacttgttt-tgtgacctaacatgcgatctgtcctggagaatgtgtcaggatatatca---ctttgccagatAATTT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36181358 160 +  58131712 ----tcagttttccttctactattgaatttttgcttcatcctatttttggtggaaacagattcttgatttactttgtcttaagtttgttaagacttgttt-tgtgacctaacatgcgatctatcctggagaatgtGTCAGGATATATCA---ctttgccaggtaattt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107989100 154 - 132174527 ----ttcattttccttttactatttaatttgtgctttatcctatttttgatcaaaaca--ttcttcattt-ctatgtc-taaattttttaagacttgttt-tgttatctaacg--tgatctttcctggagaacgATTCAGGATATGTCA---Ctttgacagataattt
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26800190 145 -  40214260 tctagtggattttcttcaact-ttaaatgtttttttttttatatttt--------atacctttttgttga----tattttcattttcttcatgcatgtttccctgagttcactcagcaccttt----------atgccagtcattttgaattctttgttagataattc
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e panTro4.chrUn_GL393505          290476 296 +   1195001 M

a score=978741.000000
s hg38.chr14_KI270725v1_random    151351 257 +    172810 atatacctccatttttg-aagggttgatatttggaaacttatttt----cttctttttattaggccatgtttccctgtttccttgtgtgccttttaattttgtgttgttattctaggatttg-------aaaaaaataaccacttctccttgtctttacagactggttttgcactgggaaatcctttcaccagtcagcccagttagagattctgaag-tgtgtcaaatc--t-ttctgTGAATGTATTGTCTCTGAAAT-TGTGTGTAAATTCT
s panTro4.chrUn_GL393505          290772 257 +   1195001 atatacctccatctttg-aggggttgatatttggaaacttatttt----cttccttttattgggccatgtttccctgtttccttgtgtgccttttaattttgtgttgcgattctaggatttg-------aaaaaaataaccacttctccctatctttacagactggttttgcactgggaaatcctttcaccagtcagtccagttagagattctgaag-tgtgtcaaatc--t-tgctgtgAATGTATTGTCTCTGGAAT-TGTGTGTAAATTCT
i panTro4.chrUn_GL393505       M 296 C 0
s gorGor3.chr7                  58790845 257 + 158137892 atatacctccatttttg-aagggttgatatttggaaacttatttt----cttccttttattaggccatgtttccctgtttccttgtgcgccttttaattttgtgttgtgattctaggatttg-------aaaaaaataaccacttctccctgtctttacagactggttttgcactgggaaatcctttcactagtcagcccagttagagattctgaag-tgtgtcaaatc--t-ttctgTGAATGTATTGTCTCTGAAAT-TGTGTGTAAATTCT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5816083 257 +  72422247 atatacctccatttttg-aagggttgatatttggaaacttatttt----gttccttttattgggccatgtttccttgtttccttgcgtgccttttaattttgtgttgcaattctaggatttg-------aaaaaaataaccacttctccctgtctttacagactggttttgcactgggaaatcctttcaccagtcagcccagttagagattctgaag-tgtgtcaaatc--t-ttctgtgaatgtaTTGTCTCTGGAAT-TGTGTGTAAATTCT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536009 258 + 121039945 atatacctccatttttg-aagggttgatatttggaaacttatttt----gttccttttattgggccatgtttccctgtttccttgtgtgccttttaattttgtgttgcgattctaggatttg-------aaaaaaataaccacttctccctgtctttacagagtggttttgcactgggaaattctttcaccagtcagcctagttggagattctgagg-tgtgtcaaatc--tattctgtgaatgtaTTGTCTCTGGAAT-TGTGTGCAAATTCT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875332 252 - 170124641 atatacctccatttttgaaagggttgattttcggaaacttattttaatagttccttttattgggccatgtttccctgtttccttgtgtgccttttaattttgtgttgcaattctaggatttg-------aaaaaaacaaccacttctccctgtctttgcag-----------actgggaaaccccttcaccagtcagcccagttagagattctgagg-tgtgtcaaatc--tattctgtgaatgtaTTGCCTCTGGAAT-TGTGTGTAAATTCT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147865690 252 - 171882078 atatacctccatttttgaaagggttgattttcggaaacttattttaatagttccttttattgggccatgtttccctgtttccttgtgtgccttttaattttgtgttgcaattctaggatttg-------aaaaaaataaccacttctccctgtctttgcag-----------actgggaaaccccttcaccagtcagcccagttagagattctgagg-tgtgtcaaatc--tattctgtgaatgtaTTGCCTCTGGAAT-TGTGTGTAAATTCT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793025 252 - 162156779 ATATACCTCCATTTTTGAAAGGGTTGATTTTTGGAACCTTATTTTAATAGTTCCTTTTATTGGGCcatgtttccctgtttctttgtgtgccttttaattttgtgttgcAATTCTaggatttg-------aaaaaaataaccaCTTCTCCCTGGCTTTGCAG-----------ACTGGGAAACCCCTTCACCAGTCAGCCCAGTTAGAGATTCTGAGG-TGTGTCAAATC--TATTCTGTGAATGTATTGCCTCTGGAAT-TGTGtgtaaattct
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36181518 254 +  58131712 atatacctccatttttgaaagggttgatttttggaaacttattttaatagttccttttattgggccatgtttccctgtttccttgtgtgccttttcattttgtgttgcaattctaggatttg-------aaaaaaataaccacttctccctgtctttgcag-----------actgggaaaccccttcaccagtcagcccagttagagattctgagg-tgtgtcaaatctATATTCTGTGAATGTATTGTCTCTGGAAT-TGTGTGTAAATTCT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107989254 266 - 132174527 ctatacctccatttttgaaacggttgatttttggaaacttataat----gtttcttttattgggccatgtttccctgtttctctgtgtgccctttaattttgcgttgggattctaggatttgaaaaacaaaaaaaacaaccacctctccctgtctttacagactggttttgcacctggacatcctttcaccagtcagccctgttagagattctgagg-tgtgtcaaatc--tattttgtgaatgtgtcATCTCTGGAAT-TGTGTGTAAAGTCT
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26800335 253 -  40214260 ttacacctaaatttctt-tagggttggtttctggagatttatttc-----atccttttgttggggtgtgtttctctgtttcttcaaattctttatatctttgttttgggaacaaaacatttg-------aaaaaact-gctacttttcccagtctttacagattggctttgtccagggaaaggtctttaccattttg----gctagacattcttaggatctctcaaaca--t-ttctgTGGATACAATTTCTTTGGTTTATGCATTTTAATTCC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I

a score=1272.000000
s hg38.chr14_KI270725v1_random    151608 2 +    172810 GA-
s panTro4.chrUn_GL393505          291029 2 +   1195001 TA-
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58791102 2 + 158137892 GA-
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5816340 2 +  72422247 TA-
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536267 2 + 121039945 TA-
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875584 2 - 170124641 TA-
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147865942 2 - 171882078 TA-
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793277 2 - 162156779 ta-
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36181772 2 +  58131712 TA-
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107989520 2 - 132174527 TA-
i calJac3.chr10                C 0 C 0
s tarSyr2.KE933570v1               88101 2 +    145891 CA-
i tarSyr2.KE933570v1           N 0 I 1024
s canFam3.chr30                 26800588 2 -  40214260 -AG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I

a score=226798.000000
s hg38.chr14_KI270725v1_random    151610 54 +    172810 ---GAAAAATTTGCAGGT--CTTTCTTCAGGAGCATGTAATCTCTTGCTCTCTTTGTTA
s panTro4.chrUn_GL393505          291031 54 +   1195001 ---GAAAAATTTGCAGGT--CTTTCTTCAGGAGCATGTAATCTCTTGCTCTCTTTGTTA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58791104 54 + 158137892 ---GAAAAATTTGCAGGT--CTTTCTTCAGGAGCATGTAATCTCTTGTTCTCTTTGTTA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5816342 54 +  72422247 ---GAAAAATTTGCAAGT--CTTTCTTCAGGAGCATGTAATCTCTTGCTCTCTTTGTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536269 54 + 121039945 ---GAAAAATTTGCAGGT--CTTTCTTCAGGAGCTTGTAATCTCTCGCTCTCTTTGTTA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875586 54 - 170124641 ---GAAAAATTTGCAGGA--CTTTCTTCAGGAGCTTGTAATCTCTTGCTCTCTTTGGTA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147865944 54 - 171882078 ---GAAAAATTTGCAGGA--CTTTCTTCAGGAGCTTGTAATCTCTTGCTCTCTTTGGTA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793279 54 - 162156779 ---gaaaaatttgCAGGA--CTTTCTTCAGGAGCTTGTAATCTCTTGCTCTCTTTGGTA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36181774 54 +  58131712 ---GAAAAATTTGCAGGA--CTTTCTTCAGGAGCCTGTAATCTCTTGCTCTCTTTGATA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107989522 54 - 132174527 ---GAAAAATTTGCAGGT--CTTTCTTTAGGAGCTTGTAATCTCTTGCTGTCTTTGGTA
i calJac3.chr10                C 0 I 126
s canFam3.chr30                 26800590 59 -  40214260 ATTAAGGGATTTACCAGTTCCTTTTGTCAGGAGCTCATAATCTCTTGCACCCTCTGGTG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=617323.000000
s hg38.chr14_KI270725v1_random    151664 154 +    172810 TCTATCTGTAGTACTGTAGGTTATCTGGAGTTGCTATAACCCCCT-AGCTCTCTTTTGTTCTCAGCAGTCCTCAG-ACATGAAGAGTA--------TCCggtcagacagaaaacagtccatcaggctgactgggaaaagttgaaattctggatgcacactccag
s panTro4.chrUn_GL393505          291085 153 +   1195001 TCTATCTGTAGTACTATAGGTTATCTGGAATTGCTATAACCCCC--AGCTCTCTTTTGTTCTCAGCAGTCCTCAG-ACATCAAGAGTA--------TCCggtcagacagaaaacagtccgtcaggctgactgggaaaagttggaattctggatgcacactccag
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58791158 154 + 158137892 TCTATCTGTAGTACTGTAGGTTATCTGGAGTTGCTATAACCCCCT-AGCTCTCTTTTGTTCTCAGCAGTCCTCAG-GCATCAAGAGTA--------TCCGGTCAGACGGAAAACAGTCTGTCAGGCTGACTGGGAAAAGTTGGAATACTGGATGCACACTCCAG
i gorGor3.chr7                 C 0 I 950
s ponAbe2.chrUn                  5816396 154 +  72422247 TCTATCTGTAGTACTGTAGGTTATCTGGAGTTGCTATAACCCCCT-AGCTCTCTTTTGTTCTCAGCAGTCCTGAG-ACATCAAGCGTA--------TCCggtcagacagaaaacagtccatcaggctgactgggaaaagttggaattctggatgcactctccag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536323 154 + 121039945 TCTATCTGTAGTACTGTAGGTTCTCTGGAGTTGCTGTAACCCCCT-AGCTCTCTTTTGTTCTCAGCAGTCCTCAG-ACATCAAGAGTA--------Tcaggtcagacagaaaacagtccctcaggctgactgggaaaagttggaattctggatgcacactccag
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875640 154 - 170124641 TCTATCTGTAGTACTGTAGGTTCTCTGGAGTTGCTGTAACCCCTT-AGCTCTCTTTTGTTCTCAGCAGTCCTCAG-ACATCAAGAGTA--------Tcaggtcagacagaaaacagtccctcaggctgactggggaaagttggaattctggatgcacactccag
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147865998 154 - 171882078 TCTATCTGTAGTACTGTAGGTTCTCTGGAGTTGCTGTAACCCCTT-AGCTCTCTTTTGTTCTCAGCAGTCCTCAG-ACATCAAGAGTA--------Tcaggtcagacagaaaacagtccctcaggctgactggggaaagttggaattctggatgcacactccag
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793333 154 - 162156779 TCTATCTGTAGTACTGTAGGTTCTCTGGAGTTGCTGTAACCCCTT-AGCTCTCTTTTGTTCTCAGCAGTCCTCAG-ACATCAAGAGTA--------TCAGGTCAGACAGAAAACAGTCCCTCAGGCTGACTGGGGAAAGTTGGAATTCTGGATGCACACTCCAG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36181828 154 +  58131712 TCTATCTGTAGTACTGTAGGTTCTCTGGAGTTGCTGTAACCCCCT-AGCTCTTTTTTGTCCTCAGCAGTCCTCAG-ACATCAAGAGTA--------Tcaggtcagacagaaaacagtccctcgggctgactggggaaagttggaattctggatgcacactccag
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107989702 153 - 132174527 CTTCTCTGTAGTACTACAGGTTCTCTGGAGTTGCTATGACCCCT--AGCTCTCTTCTGTTCTCAGCAGTCCCCAG-ACATCAAGAGTA--------TCAGGTCAGACAGAAAGCAGTCTCTCAGCCTGACTGGGAAAAGTTGGAATTCTAGATGTGTGCTCCAG
i calJac3.chr10                I 126 C 0
s canFam3.chr30                 26800649 164 -  40214260 TCTGTTTGCAATAGTGCAAGTTATCCGGTGCTGTTGTAAACTTTTCACTTCTCTTTTGTTCTCAGGGGACACCTGTGCCCCAAGTGAAACAAGAAGTCAAGTGCAACAGAAACCAGTCACTAGGCAGCTCCCACAAAAGCCTCAAAGTTGGATGTGTGCTCCAC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=110236.000000
s hg38.chr14_KI270725v1_random    151818 35 +    172810 ctttttccttc-tccaaggggaagccagg-agttgag
s panTro4.chrUn_GL393505          291238 35 +   1195001 ctttttccttc-tacaaggggaagccagg-agttcag
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816550 35 +  72422247 ctttttccttc-tccaaggggaagccagg-agttgag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536477 35 + 121039945 ctttttccttc-tccaaggagaagccagg-agttgag
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875794 35 - 170124641 ctttttccttc-tccaaggagaagccagg-agttgag
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866152 35 - 171882078 ctttttccttc-tccaaggagaagccagg-agttgag
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793487 35 - 162156779 CTTTTTCCTTC-TCCAAGGAGAAGCCAGG-AATTGAG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36181982 35 +  58131712 ctttttcctac-tccaaggagaagccagg-agttgag
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107989855 35 - 132174527 CTTTTTCCTTC-TCCAATGAGAAACCAGG-AGTTGAG
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26800813 36 -  40214260 -TCTTAGCTTCAGTCCTTGAGGGGCCAGGCCGCTGAG
i canFam3.chr30                C 0 I 101
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=250702.000000
s hg38.chr14_KI270725v1_random    151853  88 +    172810 ggttttgtcccactcattgcatattgat----------------------ccagggaaggatgatatgataagtgaatgtatgctaacccaaacttcctcaactcattta
s panTro4.chrUn_GL393505          291273  88 +   1195001 ggttttctcccactcactgcatcttgat----------------------ccagggaaggatggtacgataagtgaatgtatgctaacccaaacttcctcaactcatttg
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816585  88 +  72422247 ggttttctcccactcattgcatattgat----------------------ccagggaaggatagtatgataagtgaatgtatgctaaaccaaactgcctcaactcatttg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536512  88 + 121039945 gggtatctcccactcattgcatattgat----------------------ccagggaaggagagtatgataagtgaatgtatgctaacccaaactgcctcaactcgtttg
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875829  88 - 170124641 ggttttctcccactcattgcatattgat----------------------ccaggcaaggagagtatgataagtgaatgtatgctaacccaaactgcctcaacacatttg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866187  88 - 171882078 ggttttctcccactcattgcatattgat----------------------ccaggcaaggagagtatgataagtgaatgtatgctaacccaaactgcctcaacacatttg
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793522  88 - 162156779 GGTTTTCTCCCACTCGTTGCATATTGAT----------------------CCAGGCAAGGAGAGTATGATAAGTGAATGTATGCTAACCCAAACTGCCTCAACGCATTTG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182017  88 +  58131712 ggttttctcccactcattgcatattgat----------------------ccagcgaaggagagtatgataagtgaatgtatgctaacccaaactgcctcaacgcatttg
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107989890 110 - 132174527 GGTTTTCTCCTACTCATTCCATAATGATGGAATGGTAAGTCATACTCTCCCCAGGGAGGGAGAGTATGATAAGCGAATGCATGCTAACCCAAACTGCCTCAACTCATTTG
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26800849 101 -  40214260 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=4095.000000
s hg38.chr14_KI270725v1_random    151941 1 +    172810 t
s panTro4.chrUn_GL393505          291361 1 +   1195001 t
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816673 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536600 1 + 121039945 t
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875917 1 - 170124641 t
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866275 1 - 171882078 t
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793610 1 - 162156779 T
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182105 1 +  58131712 t
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990000 1 - 132174527 T
i calJac3.chr10                C 0 C 0
s otoGar3.GL873659                338704 1 -   5247441 t
i otoGar3.GL873659             N 0 I 149
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26800849 101 -  40214260 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=85824.000000
s hg38.chr14_KI270725v1_random    151942 27 +    172810 tcttaatatccccaacctggaaagctt
s panTro4.chrUn_GL393505          291362 27 +   1195001 tcttaatatccccaacctggaaagctt
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816674 27 +  72422247 tcttaatatccccaacctggaaagctt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536601 27 + 121039945 tcttaatatccccaacctggaaagctt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875918 27 - 170124641 tcttaatatccccaacctggaaagctt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866276 27 - 171882078 tcttaatatccccaacctggaaagctt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793611 27 - 162156779 TCTTAATATCCCCAACCTGGAAAGCTT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182106 26 +  58131712 tcttaatatccccaacctgg-aagctt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990001 27 - 132174527 TCTCAATATCCCTAACCTGGAAAGCTT
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e canFam3.chr30                 26800849 101 -  40214260 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I
e otoGar3.GL873659                338705 149 -   5247441 I

a score=280790.000000
s hg38.chr14_KI270725v1_random    151969 90 +    172810 tcctgtta--atgcttaaattcaggcaagacagaaaacaatcacttggcaactcccctg--aagtctgaacactgaatgtgtgt-tgcagtattc
s panTro4.chrUn_GL393505          291389 90 +   1195001 tcctgtta--gcgcttaaattcaggcaagacagaaaacaatcacttggcaactcttctg--aagtctgaacactgaatatgtgt-ttcagtattc
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816701 90 +  72422247 tcctgtta--gcgcttaaattcaggcaagacagaaaacaatcacttggcaactcccctg--aagtctaaacactgaatgtgtgt-ttcagtattc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536628 90 + 121039945 tcctgtta--gcacttaaattcaggcaagacagaaaacaatcacttggcaactcccctg--aagtctgaacattgaatgtgtgt-ttcagtattc
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145875945 90 - 170124641 tcctgtta--gcacttaaattcaggcaagacagaaaacaatcacgtggcagctcccctg--aagtctgaacatttaatgtgtgt-ttcggtattc
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866303 90 - 171882078 tcctgtta--gcacttaaattcaggcaagacagaaaacaatcacgtggcaactcccctg--aagtctgaacatttaatgtgtgt-ttcggtattc
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793638 90 - 162156779 TCCTGTTA--GCACTTAAATTCAGGCAAGACAGAAAACAATCACGTGGCAACTCCCCTG--AAGTCTGAACATTTAATGTGTGT-TTCGGTATTC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182132 90 +  58131712 tcctgtta--gcacctaaattcaggcaagacagaaaacaatcacgtggcaactcccttg--aagtctgaacattcaatgtgtgt-ttcggtattc
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990028 89 - 132174527 TCCTGTTA--GCATTTAAATTcaggcaagacagaaaacaatcacttgacaactc-cctg--aagtctgaacattaaatgtgtgt-ttcattattc
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26800950 93 -  40214260 tctcatcagtgcacttaaat--agacaaaacagaaaccagtcttttcagtagtccctggaaaaggtggaacattggacacatacatacaacacac
i canFam3.chr30                I 101 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I
e otoGar3.GL873659                338705 149 -   5247441 I

a score=4054.000000
s hg38.chr14_KI270725v1_random    152059  4 +    172810 --tctt---------------
s panTro4.chrUn_GL393505          291479  4 +   1195001 --tctt---------------
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816791  4 +  72422247 --tctt---------------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536718  4 + 121039945 --tctt---------------
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876035  4 - 170124641 --tctt---------------
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866393  4 - 171882078 --tctt---------------
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793728  4 - 162156779 --TCTT---------------
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182222  4 +  58131712 --tttt---------------
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990117  4 - 132174527 --tttt---------------
i calJac3.chr10                C 0 C 0
s otoGar3.GL873659                338854  4 -   5247441 --tttt---------------
i otoGar3.GL873659             I 149 I 39
s canFam3.chr30                 26801043 21 -  40214260 acacgtgcgcacacacacacg
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=141157.000000
s hg38.chr14_KI270725v1_random    152063 45 +    172810 tcacttctgt----gggggaatcaggaactgtagagtattctccCAAAC
s panTro4.chrUn_GL393505          291483 45 +   1195001 tcacttctgt----gggggaatcaggaactgtagagtattctccCAACC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816795 45 +  72422247 tcacttctgt----gtgggaatcaggaactgtagagtattctccCAATC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536722 45 + 121039945 tcactccttt----ggggaaatcaggaactgTAGAGTATTCTGCCAATC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876039 45 - 170124641 tcactccttt----gggggaatcaggaactgtagagtattctccctATC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866397 45 - 171882078 tcactccttt----gggggaatcaggaactgtagagtattctccctATC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793732 45 - 162156779 TCACTCCTTT----GGGGGAATCAGGAACTGTAGAGTATTCTCCCTATC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182226 45 +  58131712 tcactccttt----gggggaatcaggaactgtagagtattctccctATC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990121 44 - 132174527 tcactttttt----ggggaaatcaggaactgt-gagtattctcccaatc
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26801064 49 -  40214260 ttatttccatcccagggggaatccaggacttgggagttttcttctactc
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I
e otoGar3.GL873659                338858 39 -   5247441 I

a score=14056.000000
s hg38.chr14_KI270725v1_random    152108 6 +    172810 TTGTTA--
s panTro4.chrUn_GL393505          291528 6 +   1195001 TTGTTA--
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816840 6 +  72422247 TTGTTA--
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536767 6 + 121039945 TTGTTT--
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876084 6 - 170124641 TTGTTA--
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866442 6 - 171882078 TTGTTA--
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793777 6 - 162156779 TTGTTA--
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182271 6 +  58131712 CTGTTA--
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990165 6 - 132174527 tcgtta--
i calJac3.chr10                C 0 C 0
s otoGar3.GL873659                338897 6 -   5247441 ttgtga--
i otoGar3.GL873659             I 39 I 21
s canFam3.chr30                 26801113 6 -  40214260 --attcca
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=46511.000000
s hg38.chr14_KI270725v1_random    152114 17 +    172810 TACTGAGTCACCGGAGG
s panTro4.chrUn_GL393505          291534 17 +   1195001 TACTGAGTCACAGGAGG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816846 17 +  72422247 TACTGAGTCACAGGAGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536773 17 + 121039945 TACTGAGTCACAGGAGG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876090 17 - 170124641 TACTAAATCACAGGAGG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866448 17 - 171882078 TACTAAATCACAGGAGG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793783 17 - 162156779 TACTAAATGACAGGAGG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182277 17 +  58131712 TACTGAATCACAGGAGG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990171 17 - 132174527 tgccgagtcaagggagg
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26801119 14 -  40214260 cattgggtcag---agg
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I
e otoGar3.GL873659                338903 21 -   5247441 I

a score=3742.000000
s hg38.chr14_KI270725v1_random    152131 3 +    172810 AAC
s panTro4.chrUn_GL393505          291551 3 +   1195001 AAT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816863 3 +  72422247 AAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536790 3 + 121039945 AAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876107 3 - 170124641 AAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866465 3 - 171882078 AAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793800 3 - 162156779 AAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182294 3 +  58131712 AGT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990188 1 - 132174527 a--
i calJac3.chr10                C 0 C 0
s otoGar3.GL873659                338924 3 -   5247441 AAC
i otoGar3.GL873659             I 21 N 0
s canFam3.chr30                 26801133 3 -  40214260 gac
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=1504165.000000
s hg38.chr14_KI270725v1_random    152134 470 +    172810 GATGGTGATTGAGTGACAGTCCAAACTGTGGCTT----TATCAGCAGGCATGCAATCTGGCATCCTTTCCTGTTAGCACTTAGATTCAGGGTAGATAGGTGCTAG---------------Tgccctcccaaaaagtcaaaatgttggacgtatggtctagacttttctttctctccctagagatgagctgggagtttggagctttctctccattgcgttgtactgctgagggaggatg----------agtgagtgcaacaaatttacctgctggttttgatgtgcctggcttgaagcctaccagggaatccagagtctttaaattctcctctgaacttttcacgaaggggatttatctgtgtattattatcgagctggtgtctccttggagaggagggtggaggggctttgaggctttctatttcatcatcttgctggtatcCTGACAGGAATTTTAAACTGGGCTCCTTTCCCCACATT----------GTTGGAGAATGGATCCTG
s panTro4.chrUn_GL393505          291554 470 +   1195001 GATGGTGATTGAGTGACAGTCCAAACTGTGCCTT----TATCAGCAGGCATGCAATCTGGCATCCTTTCCTTTTAGTACTTAGATTCAGGGTAGATAGGTGCTAG---------------Tgccctcccaaaaagtcaaaatgttggacatatggtctagacttttcgttctctccctagagatgagctgggagtttggagctttctctccattgcgttgtaccactgagggatgatg----------agagagtgcaacaaatttacctgctggtttagatgtgcctggcttgaagcctacccgggaatccagagtcgttaaattctcctctgtacttttcacaaaggagatttatctgtgtattattgtcgagctgctgtctccttggagaggagggtggaggggctttgaggttttctattgcatcatcttgctggtgtcCTGACAGGAATTTTAAACTGGGCTCCTTTCCCCCCATT----------GTTGGAGAATGGATCCTG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5816866 464 +  72422247 GATGGTGATTGAGTGACAGTCCAAACTGTGGCTT----TATCAGCAGGCATGCAATCTGGCATCCTTTCCTGTTAGTACTTAGATTCAGAGTAGACAG------G---------------Tgccctcccaaaaagtcaaaatgctgaacatatggtctaaacttttctttctctccctagagatgagctgggagtttggtgctttctctccattgtgttgtactgctgagggaggatg----------aatgagtgcaacaaatttacctgctgatttagatgtgtctggcttgaagcctaccagggaatccagagtctttaaattggcctctgtacttttcacaaaggggatttatttgcgtattattgtcgagcgggtgtctccttggacaggagggtggaggggctttgaggctttctatttcatcatcttgctggtgtcCTGACAGGAATTTTAAACTGGGCTCCTTTCTCCGCATT----------GTTGGAGAATGGATCCTG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53536793 484 + 121039945 GATGGTGATTGAGTGACAGTCCAAACGGTGGCTT----TATCAGCAGGCATGCAATCTGGCAT-CTTTcctgttagcacttagattcagggtagataggtgctagttccttgggcagccctgccctcctaaaaagtcaaaatgttcgacatatggtctagacttttctttctctccctagagataagctgggagtttggagctttctctctattgcgttgtactgttgagggaggatg----------agtgagtgccacaaatctacctgctggtttagatgtgcctggcttgaagcctaccagggaatccagggtctttaaattcgtttctgtactttccacaaaggggatttatctgtgtagtattgtcgagctggtgtctccttggagaggagggtggaggggctttgaggctttatatttcatcatcttgctggtgtcCTGACAGGAATTTTAAGCTGGGCTCCTTTCCCTGCATT----------GTTGGAGAATGGATCTTG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876110 495 - 170124641 GATGGTGATTGAGTGGCAGTTCAAACTGTGGCTT----TTTCAGCAGGCATGCAGTCTGGTATCCTTTCCTGTTAGCACTTAGATTCAGAGTagataggtgctagttccttgggcagccctgccctcccaaaaagtcaaaatgttggacatatggtctagacttttctttctctccctagcgataagctgggaggttggaactttctctccattgcattgtactgttgagggaggatg----------agtgagtgccacaaatttacctgctggtttagatgtgcctgacttgaagcctaccagggaatccagaatctttaaattagtttctgtacttttcacaaaggggatttatctctgtattattgttgagctggtgtctcctgggagagaagggtggaggggctttgaggcttcctattccatcatcttgctggtgtcCTGACAGGAATTTTAAACTGGGCTCCTTTCCCCGCATTTTGGATCCTGGCTGGAGAATGGATCCTG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866468 495 - 171882078 GATGGTGATTGAGTGGCAGTTCAAACTGTGGCTT----TTTCAGCAGGCATGCAGTCTGGTATCCTTTCCTGTTAGCACTTAGATTCAGAGTagataggtgctagttccttgggcagccctgccctcccaaaaagtcaaaatgttggacatatggtctagacttttctttctctccctagcgataagctgggaggttggaactttctctccattgcattgtactgttgagggaggatg----------agtgagtgccacaaatttacctgctggtttagatgtgcctgacttgaagcctaccagggaatccagaatctttaaattagtttctgtacttttcacaaaggggatttatctctgtattattgttgagctggtgtctcctgggagagaagggtggaggggctttgaggcttcctattccatcatcttgctggtgtcCTGACAGGAATTTTAAACTGGGCTCCTTTCCCCGCATTTTGGATCCTGGCTGGAGAATGGATCCTG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140793803 495 - 162156779 GATGGTGATTGAGTGACAGTTCAAACTGTGGCTT----TTTCAGCAGGCATGCAGTCTGGTATCCTTTCCTGTTAGCACTTAGATTCAGAGTAGATAGGTGCTAGTTCCTTGGGCAGCCCTGCCCTCCCAAAAAGTCAAAATGTTGGACATATGGTCtagacttttctttctctccctagCGATAAGCTGGGAGTTTGGAACTTTCTCTCCATTGCATTGTACTGTTGAGGGAGGATG----------AGTGAGTGCCACAAATTTACCTGCTGGTTTAGATGTGCCTGACTTGAAGCCTACCAGGGAATCCAGAGTCTTTAAATTAGTTTCTGTACTTTTCACAAAGGGGATTTATCTCTGTATTATTGTTGAGCTGGTGTCTCCTGGGAGAGAAGGGTGGAGGGGCTTTGAGGCTTCCTATTCCATCATCTTGCTGGTGTCCTGACAGGAATTTTAAACTGGGCTCCTTTCCCCGCATTTTGGATCCTGGCTGGAGAATGGATCCTG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182297 495 +  58131712 GATGGTGATTGAGTGACAGTTCAAACTGTGGCTT----TTTCAGCAGGCGTGCAGTCTGGCATCCTTTcctgttagcacttagattcagggtagataggtgctagttccttgggcagccctgccctcccaaaaagtcaaaatgttggacatatggtctagacttttctttctctccctagcgataagctgggagtttggaactttctgtccattgcgttgtactgttgagggaggatg----------agtgagtgccacaaatttacctgctggtttagatgtgcctggcttgaagcctaccggggaatccagagtctttaaattcgtttctgtacttttcacaaaggggatttatctctgtattattgtcgagctggtgtctcctgggagagaagggtggaggggctttgaggcttcctattccgtcatcctgctggtgtcCTGACAGGAATTTTAAACTGGGCTCCTTTCCCCGCATTTTGGATCCTGGCTGGAGAATGGATCCTG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990189 473 - 132174527 -aaggtgagtgagtgACAGTCCAAACTGTGGCTT-TACTATCAGCAGGCATGCAATCTGGAATCCTTTCCTGTTAGCGCTTAGATTCAGAGAAGATAGGTGCTAGTCCCTTGGGCAGCCCTGCCCTCCCAAAAAGTCATAATGTTGGACATGTTGTCTAGACTTCTCTTTATCTCCCTAGAGATAAGCTGGGAGTTTGGAGCTTTCTCTCCATTGCATTGTATTGCTgagggaggatg----------agtgagtgcctcaaatttacccactggtttaggtgtgcctggcttcaagcttaccagcaaatccagag--------------tctggacttttcacagagaggatttatctctgtattactgtcgagttggtgtctccttggagaggagggtgaaggggctttaagtctttctattccataatcttgctgatgccCTGACAGGAATTTTAAACTGGGCTTCTTTCCCCACATT----------GCTGGAGTATGAATCCTG
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26801136 478 -  40214260 tacagtgagtgaatgc---tccaaaccattgcctttgttttcagtggtccccca-ccttatgctttttcctgtcagtaattagatgcaggcaagacagaagccaatctcttgggaa-----gtccctccaaaaactcagattgttggatatatgatccatatttctctttttatcctggaagggaagccaggagttgggagcttcctttcacttgtattgtgctatgctgggaagaaggactatagctaatgggtgtcataatttttctcaccagctttgatgctcctaattcagaatttgctagggttgcagaagcatcttaactgatttctggatttttcacaaaaggaatcagtctatgt--tgctgtggagtcaatgtctctgtggggaaaata----------tccgggtttttttgttcctctatcttgctggtgtcTGGACAGAAATTTTTAACCTGGCCCTCCTCTACTCCTG----------GTTGGAGAATGGACGTTG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               88103 1024 +    145891 I

a score=32978.000000
s hg38.chr14_KI270725v1_random    152604 11 +    172810 GCTGGTTATAG
s panTro4.chrUn_GL393505          292024 11 +   1195001 GCTGATTATAG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5817330 11 +  72422247 GCTGATTATAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537277 11 + 121039945 GCTGATTATAG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876605 11 - 170124641 GCTGATTACAG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866963 11 - 171882078 GCTGATTACAG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140794298 11 - 162156779 GCTGATTACAG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182792 11 +  58131712 GCTGATTACAG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990662 11 - 132174527 GCTGATTATAG
i calJac3.chr10                C 0 C 0
s tarSyr2.KE933570v1               89127 11 +    145891 TCGGGTAGCAG
i tarSyr2.KE933570v1           I 1024 I 1554
s canFam3.chr30                 26801614 11 -  40214260 GTATATAAGAG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58108961 1174 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I

a score=523020.000000
s hg38.chr14_KI270725v1_random    152615 153 +    172810 GTACTCATGAAATACT---GGATAAATTATTATTTATCATTTACTTACAAAAACTTAAAATTTTTATTATGGGAAATAAGTTTttaatcactattaaagtttgctgaagcactaattca--ttactg--tgaaaagtggggaggggtataaaaatcaagc
s panTro4.chrUn_GL393505          292035 153 +   1195001 GTACTCATGAAATACT---GGATAAATTATTATTTATCGTTTGCTTAcaaatacttaaaaattttattatgggaaataagtttttaatctctattaaagtttgttgaagcactaattca--ttactg--tgaaaagtgtggaggggactaaaaatcaagc
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5817341 153 +  72422247 GTACTCATGAAATACT---GGATAAATTATTATTTGTCATTTACTTACaaatatttaaaatttttattatGGGAAATAAGTTTTTAATCACTATAAAAGTTTCTTGAAGCactaattca--ttactg--tgaaaagtgggtaggggaataaaaatcaagc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537288 153 + 121039945 ATACTCATGAAATATT---GGGTAAATTATTATTTATCATTTACTTAcaaatatttaaaatttttattatggaaaataagtttttaatcactgttaaagtttgttgaagcactaattca--ttactg--tgaaaagtagggaggggaataaaaatcaagc
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876616 153 - 170124641 GTACTAATGAAATACT---GGGTAAATTATTATTTATCATTTACTTACAAATATTTACAGTTTTTATTATGGGAAATAAGTTTttaatcaccattaaagtttgttgaagcactaattca--ttactg--tgaaaagtggggaggggaataaaaatcgaac
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147866974 153 - 171882078 GTACTAATGAAATACT---GGGTAAATTATTATTTATCATTTACTTACAAATATTTACAGTTTTTATTATGGGAAATAAGTTTttaatcaccattaaagtttgttgaagcactaattca--ttactg--tgaaaagtggggaggggaataaaaatcgaac
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140794309 153 - 162156779 GTACTAATGAAATACT---GggtaaattattatttatcatttacttacaaatatttacagtttttattatgGGAAATAAGTTTTTAATCACCATTAAAGTTTGTTGAAGCACTAATTCA--TCACTG--TGAAAAGTGGGGAGGGGAATAAAGATCGAAC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182803 153 +  58131712 GTACTAATGAAATACT---GGGTAAATTATTATTTATCATTTACTTACAAATATTTACAGTTTTTATTATGGGAAATAAGTTTttaatcaccattaaagtttgttgaagcactaattca--ttactg--tgaaaagtggggaggggaataaaaagcaaac
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990673 154 - 132174527 GTACTCATGAAATGCTG--GGGTAAATTATTCTTTATCATTTCCTTACaaatatttaaaatttttattatGGGAAATAACTTTTTAATCAGTATTAAAGTTtgttgaagcactaattca--ttagta--tgaaaagtggggaagagaataaaaatcaagc
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110135 154 - 182113224 GTGCTCAGGAAGTATTTGCTGGCAGCTTTTTGTTTGTCATTTGATTACAAAAAAATTAAATTTCC-CTATGGAAATAATGATTTTAATCATTGATAAAGGCTATTGAA-----AATTCATTTTGCTGCATAGAAAACAGATTAAAGTATCAAAATCAATC
i mm10.chr2                    I 1174 C 0
s canFam3.chr30                 26801625 146 -  40214260 ACACCCATGAATAGTTGATGGAGGAATTATTATTTGTCATTGATTTCCAAACTTTAAAAATTttcattatgggaaataattttttgatcactagtgaaagttgttgaatcaccaattaa--ttactt--tcagaag---ggagtaatttaagg-------
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e gorGor3.chr7                  58791312 950 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I

a score=325158.000000
s hg38.chr14_KI270725v1_random    152768  82 +    172810 atttgtctacttatcttg-------tttttcctgt--------------------ccaaactgtgttttggtgtaatc-aatacacatttgggaggaaatgttcttttag
s panTro4.chrUn_GL393505          292188  82 +   1195001 atttgtctacttatcttg-------cttttcctgt--------------------ccaaactgtgttttggtgtaatc-aatacacatttgggaggaaatgttcttttag
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792262  78 + 158137892 atttgtctacttatcttg--------ttttcctgt--------------------ccaaactgtgttttggtgtaatc-aat--acatttgggaggaaatgttc-tttag
i gorGor3.chr7                 I 950 C 0
s ponAbe2.chrUn                  5817494  82 +  72422247 atttgtctacttatcttg-------cttttcctgt--------------------caaaactgtgttttggtgtaatc-aatacatatttgggaggaaatgttcttttag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537441  82 + 121039945 atgtgtttatttatcttg-------cttttccggt--------------------ccaaattgtgttttggtgtaatc-aatacacatttgggaggaaatgttcttttaa
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876769  78 - 170124641 ----gtttgtctatctca-------cttttcctgt--------------------ccaaactgtgttttggtgtaatc-aatacacatttgggaggaaatgttcttttag
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147867127  78 - 171882078 ----gtttgtctatctca-------cttttcctgt--------------------ccaaactgtgttttggtgtaatc-aatacacatttgggaggaaatgttcttttag
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140794462  78 - 162156779 ----ATTTGTCTATCTCG-------CTTTTCCTGT--------------------CCAAACTGTGTTTTGGTGTAATC-AATACACATTTGGAAGGAAATGTTCTTTTAG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36182956  78 +  58131712 ----atttgtctatctcg-------cttttcctgt--------------------ccaaactgtgttttggtgtaatc-aatacacatttgggaggtaatgttcttttag
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990827  80 - 132174527 atttgtctatttatcttg-------cttttcctgt--------------------ccaaac--tgttttggtgtaatc-aatacacattagggaggaaatgttcttttag
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110289 103 - 182113224 ATTTATCTATTTATCATG-------GTTATCCTGTTTTATTATATTCTCACCTCATTTAACTCTATGTTGGGAAAAACTAACACACATTTGAGATAAAATGTTCTTCGAA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26801771  78 -  40214260 --------atttatcttgtttttttttttttctgt--------------------tcaagctgtattttagagtaacc-aatatatattagggagaaa---tttttttaa
i canFam3.chr30                C 0 I 167
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I

a score=484495.000000
s hg38.chr14_KI270725v1_random    152850 114 +    172810 aaattattccagctaataaatgaagaaaaaaatgaaagaatgtagtaccctgttataacacctag------taaaataatggttgaaac-aagttttctaatgaatgctaaagctattagt
s panTro4.chrUn_GL393505          292270 114 +   1195001 aaattattccagctaataaatgaagaaaaaaatgaaagaatgtagtaccctgttataacacctag------taaaataatggttgaaac-aagttttctaatgaatgctaaaactatcatt
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792340 114 + 158137892 aaattattccagctaataaatgaagaaaaaaatgaaagaatgtagcaccctcttataacacctag------taaaataatggctgaagc-aagttttctaatgaatgctaaaactattagt
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5817576 112 +  72422247 aaattattccagctaataaatgaagaaaaaaatgaaataatgtagtacc--gttataacacctag------taaaataatggTTGAAAC-AAGTTTTATAATGAATGCTAAAACTATCAGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537523 114 + 121039945 aaattatcccagctaataaattaagaaaaaaatgaaagattgtagtactctgttataacacctag------aaatataatggttgaagc-aagttttataatgaatgctaaaactattagg
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876847 114 - 170124641 aaattattccagctaataaatgaagaaaaaaatgaaagaatgtactaccctcttataacacctgg------taaaataatggttgaagc-aagttttataatgaatgctaaaactattagg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147867205 114 - 171882078 aaattattccagctaataaatgaagaaaaaaatgaaagaatgtactaccctcttataacacctag------taaaataatggttgaagc-aagttttataatgaatgctaaaactattagg
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140794540 114 - 162156779 AAATTATTCcagctaataaatgaagaaaaaaatgaaagaatgtacTACCCTCTTATAACACCTAG------TAAAATAATGGTTGAAGC-AAGTTTTATAATGAATGCTAAAACTATTAGG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183034 113 +  58131712 aaattattccagctaataaatg-agaaaaaaatgaaagaatgtactaccctcttataacacctgg------taaaataatggttgaagc-aagttttataatgaatgctaaaactattagg
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107990907 114 - 132174527 aaattattccagctaatacatgaagaaaaaaatgaaagaatgtactaccctattataatgcctag------taaaataatggttgaagc-aagttttttaatgaatgctaaAACTATTAGG
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110392 116 - 182113224 AAATTTCATTAGTTAATCAAT--AAGCAAAAATGAAAGAATTT-CTATCTTTGTATGATACCTATACCTACTAAGATAGAATTTAGAAC-AAGTTTTGCACTGAAATATAAAAATAGT-GG
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26802016 112 -  40214260 AAATGATACCAGCTAATAAATCAAGG-ATAAGTGAAACAATTTACTACCCTTATATAATGTTTAG------TAA-ATAATTGTTTAAGCAAAGTTTCACAATGAAAGTTAAAAC-ATgggc
i canFam3.chr30                I 167 I 199
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I

a score=327033.000000
s hg38.chr14_KI270725v1_random    152964 72 +    172810 tgaaaagttgatgcaaacctttactgtggaagaatgtagctgacaTTAATTTCTTATCTGAATTACATTTTT
s panTro4.chrUn_GL393505          292384 72 +   1195001 cgaaaagttgatggaaacctttactgtggaggaatgtagctgacaTTAATTTCTTATCTGAATTACATTTCT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792454 72 + 158137892 tgaaaagctgatgcaaacctttactgtggaagaatgtagctgacaTTAATTTCTTATCTGAATTACATTTTT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5817688 72 +  72422247 TGAAAAGTTGATGCAAACCTTTACTGTGGAGGAATGTAGCTGACATTAATTTCTTATCTGAATAACATTTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537637 72 + 121039945 tgaagagttgatgcagacctttactgtggaggaatgtagctgacaTTAATTTCTTATCTAAATTACATTTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145876961 72 - 170124641 tgaaaagttgatgcagaccttgactgtggaggaatgtagctgacaTTAATTTCTTATCTGAATTACATTTTT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147867319 72 - 171882078 tgaaaagttgatgcagaccttgactgtggaggaatgtagctgacaTTAATTTCTTATCTGAATTACATTTTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140794654 72 - 162156779 TGAAAAGTTGATGCAGACCTTGACTGTGGAGGAATGTAGCTGACATTAATTTCTTATCTGAATtacattttt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183147 72 +  58131712 tgaaaagttgatgcagaccttcactgtggaggaatgtagctgacaTTAATTTCTTATCCGAATTACATTTTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991021 72 - 132174527 TGAAAAGTTGATGCAGACCTTTTCTGTGGAGAAATGAGGCTGACATTAATTTCTTATCTGAATTACATTTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110508 71 - 182113224 TATAAGTTTGGTGGAGTGTTCTACTGTAGAGATTCATGAATGATACTGCTTTCTTA-CACAATTTGATTTTT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26802327 72 -  40214260 TGAAAATTTCATAGAGAACTTTATTGTGGTTGAATTTAGCTGACATTAATTTCTTATCTAACATAGACCTTG
i canFam3.chr30                I 199 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I

a score=23307.000000
s hg38.chr14_KI270725v1_random    153036 5 +    172810 TGAAA
s panTro4.chrUn_GL393505          292456 4 +   1195001 -GAAA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792526 5 + 158137892 TGAAA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5817760 4 +  72422247 -GAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537709 4 + 121039945 -GAAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877033 4 - 170124641 -GAAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147867391 4 - 171882078 -GAAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140794726 4 - 162156779 -gaaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183219 4 +  58131712 -GAAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991093 4 - 132174527 -GAAA
i calJac3.chr10                C 0 C 0
s otoGar3.GL873530              36211833 5 -  36342412 TGAAA
i otoGar3.GL873530             N 0 I 342
s mm10.chr2                     58110579 3 - 182113224 --AAA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26802399 4 -  40214260 -GAAA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I

a score=420940.000000
s hg38.chr14_KI270725v1_random    153041 126 +    172810 CTTTATGACTC-TTTGAATTTAAAAGGGATT--TTGGTGTC--ATTA-TTTTTTCTTTTACAGTCTC-T-T---TTTTCACAT-A---------------AAAATCAACTATTAACTGATTGGTTTTATGGTCTTTTGGAAAGAGACTATATA
s panTro4.chrUn_GL393505          292460 126 +   1195001 CTTTATGACTC-TTTGAATTTAAAAGGGATT--TTGTTGTC--ATTA-TTTTTTCTTTTAGAGTCTC-T-T---TTTTCACAT-A---------------AAAATCAACTATTAACTGATTGGTTTTTTGGTCTTTTGGAAAGAGACTACATA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792531 125 + 158137892 CTTTATGACTC---TGAATTTAAAAGAGATT--TTGGTGTC--ATTA-TTTTTTCTTTTACAGTCTC-T-T---TTTTCACATAA---------------AAAATCAACTATTAACTGATTGGTTTTATGGTCTTTTGGAAAGAGACTATATA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5817764 126 +  72422247 CTTTATGACTG-TTTGAATTTAAAATGGATT--TTGGTGTC--TTTA-TTTTTTCTTTTATACTCTC-T-T---TTTTCACAT-A---------------AAAATCAACTATTAACTGATTGGTTTTATGGTCTTTTGGAAAGAGACTATACA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537713 118 + 121039945 CTTTATGACTC-TTTGAATTTAAAAGAGATT--TTGGTGTC-----A-TTTTTTCTTCTATACTCTCTT-T---TTTTCACAT-A---------------AAAATCAAC-AATAACTGATTGGTTTTATGGTCTTTTGGAAAGAGACT-----
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877037 123 - 170124641 CTTTTTGACTC-TTTGAATTTAAAGGGGATT--TTGGTGTC-----A-TTTTTTCTTTTACACTCTT-T-T---TTTTCACAT-A---------------AAAATCAACTATTAACTGATTGGTTTAATGGTCTTTTGGAAAGAGACTATGTA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147867395 123 - 171882078 CTTTTTGACTC-TTTGAATTTAAAGGGGATT--TTGGTGTC-----A-TTTTTTCTTTTACACTCTT-T-T---TTTTCACAT-A---------------AAAATCAACTATTAACTGATTGGTTTAATGGTCTTTTGGAAAGAGACTATGTA
i macFas5.chr7                 C 0 I 308
s papAnu2.chr7                 140794730 123 - 162156779 ctttttgactc-tttgaatttaaaggggatt--ttggtgtc-----a-ttttttcttttacactctt-t-t---ttttcacat-a---------------aaaatcaactATTAACTGATTGGTTTAATGGTCTTTTGGAAAGAGACTATGTA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183223 124 +  58131712 CTTTTTGACTC-TTTGAATTTAAAGGGGATT--TTGGTGTC-----ATTTTTTTCTTTTACACTCTC-T-T---TTTTCACAT-A---------------AAAATCAACTATTAACTGATTGGATTAATGGTCTCTTGGAAAGAGACTATGTA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991097 123 - 132174527 AAGTATGACT---TTGAATTTAAAAGGGATT--TTGGTGCC--ATTA-TTTTTTCTTTTACACTTGC-T-T---TTTTCACAT-A---------------AAAATCAACTATTAACTGATTGGTTT-ATGTTTTTTTGGAAAGAGACTATAAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110582  94 - 182113224 ------------------CTTATGTGAGATTTATTGTAGTCCGTTTG-TCTCTTCTTTTCCTCTCCT-TAC---ATATTGTAT-A---------------AAAAGAGCTCATGGGC--ATCGGTGT-----------------GGACTGTAG-
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26802403 140 -  40214260 CTTTAGAACCCCTTTGAATTCAAAAAGGATT--TTAGTCTA-----A-TTTTTTAGTCTATTTTTTC-T-TTTATTTTCATGT-AAATAAAGATATATGTAAGATCAACTATTAACTAATAGATTTTATGGCCATTTGGTGAGAGACTATA--
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36211838 342 -  36342412 I

a score=28940.000000
s hg38.chr14_KI270725v1_random    153167 6 +    172810 AATTCT
s panTro4.chrUn_GL393505          292586 6 +   1195001 AATTCT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792656 6 + 158137892 AATTCT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5817890 6 +  72422247 AATTCT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537831 6 + 121039945 TATTCT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877160 6 - 170124641 AATTCT
i rheMac3.chr7                 C 0 I 319
s macFas5.chr7                 147867826 6 - 171882078 AATTCT
i macFas5.chr7                 I 308 I 2
s papAnu2.chr7                 140794853 6 - 162156779 AATTCT
i papAnu2.chr7                 C 0 I 2
s chlSab2.chr26                 36183347 6 +  58131712 AATTCT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991220 6 - 132174527 AATTCT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110676 6 - 182113224 AACTCT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26802543 6 -  40214260 GGTTTT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36211838 342 -  36342412 I

a score=2483.000000
s hg38.chr14_KI270725v1_random    153173 2 +    172810 GA
s panTro4.chrUn_GL393505          292592 2 +   1195001 GC
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792662 2 + 158137892 GC
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5817896 2 +  72422247 GC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537837 2 + 121039945 GC
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36183353 2 +  58131712 TC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991226 2 - 132174527 GC
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110682 2 - 182113224 GA
i mm10.chr2                    C 0 I 1
s canFam3.chr30                 26802549 2 -  40214260 GC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e rheMac3.chr7                 145877166 319 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36211838 342 -  36342412 I
e papAnu2.chr7                 140794859 2 - 162156779 I
e macFas5.chr7                 147867832 2 - 171882078 I

a score=350657.000000
s hg38.chr14_KI270725v1_random    153175 77 +    172810 TTTTTGTATGAAGATCTCTTTTACACTGTCAGAGGAAA-TTTTATCTCTGGTAAGCTCTGATTTCATCTTTCAATTTT
s panTro4.chrUn_GL393505          292594 77 +   1195001 TTTTTGTATGAAGATGTCTTTTACACTGTCAGAGGAAA-TTTTATCTCTGGTAAGTTCTGATTTCATTTTTCAATTTT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792664 77 + 158137892 TTTTTGTATGAAGATCTCTTTTACACTGTCAGAGGAAA-TTTTATCTCTGGTAAGCTCTGATTTCATCTTTCAATTTT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5817898 77 +  72422247 ATTTTGTATGAAGATCTCTTTTACACTGTCAGAGGAAA-TTTTATCTCTGGTAAGCTCTGATTTCATCTTTCAATTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537839 78 + 121039945 TTTTTGTATGAAGATCTCTTTTACACTGTCAGAGGAAATTTTTATCTCAGATAAGCTCTGATTTCATCTTTCAATTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877485 77 - 170124641 TTTTTGTATGAAGATCTCTTTTACACTGTCAGAGGAAA-TTTTATCTCAGACAAGCTCTGATTTCATCTTTCAATTTT
i rheMac3.chr7                 I 319 C 0
s macFas5.chr7                 147867834 77 - 171882078 TTTTTATATGAAGATCTCTTTTACACTGTCAGAGGAAA-TTTTATCTCAGACAAGCTCTGATTTCATCTTTCAATTTT
i macFas5.chr7                 I 2 C 0
s papAnu2.chr7                 140794861 77 - 162156779 TTTTTGTATGAAGATCTCTTTTACACTGTCAGAGGAAA-TTTTATCTCAGACAAGCTCTGatttcatctttcaatttt
i papAnu2.chr7                 I 2 C 0
s chlSab2.chr26                 36183355 77 +  58131712 TTTTTGTATGATGATCTCTTTTACACTGTCAGAGGAAA-TTTTATCTCAGACAAGCTCTGATTTCATCTTTCAATTTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991228 77 - 132174527 TTTTTGTATGAAGATCTCTTTTACACTGTCAGAGGAAA-TTTTATCTCAGATAAGCTCTGATTTCATCTTTCAATTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110685 67 - 182113224 CTTTTGACTGATGATCTCTAC----CCGTCAGAAGGAG-TCTTCTCTT-GGTAATCTGCAGCT-----CTCCAATTTC
i mm10.chr2                    I 1 C 0
s canFam3.chr30                 26802551 77 -  40214260 CCTTTGTATGAAGATCTTCTCTATTCTGTCAGAAGAAA-TCTTATTCCAGATGACCTCTAGGTCCAACTTCAAATGTT
i canFam3.chr30                C 0 I 21
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36211838 342 -  36342412 I

a score=424408.000000
s hg38.chr14_KI270725v1_random    153252 103 +    172810 ATTTTGAATTTCTTTCTTTGTCTTTTGTCTTATCAGCACCTTGTTTA----ATTTAAAATAGATTCAGTGTCAA----CAAGGAGTTAAATCAGGAAACTAATTTATCCAG
s panTro4.chrUn_GL393505          292671 107 +   1195001 ACTTTGAATTTCCTTCTTTGTCTTTTGTTTTATCAGCACCTTGTTTA----ATTTAAAATAGATTCAATGTCAACAGTCAAGGAGTTAACTCAGGAAACTAATTTATCCAC
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792741 103 + 158137892 ATTTTGAATTTCTTTCTTTGTCTTTTGTTTTATCAGTACCTTGTTTA----ATTTAAAATACATTCAGTGTCAA----CAAGGAGTTAAATCAGGAAACTAATTTATCCAG
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5817975 103 +  72422247 ATTTTGAAT----TTCTTTGTCTTTTGTTTTATCAGCACCTTGTTTA----ATTTAAAATAGATTCAATGTCAACAGTCAAGGAGTTAACTCAGGAAACTAATTTATCCAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53537917 107 + 121039945 ATTTTGAATTTCTTTCTTTCTCTTTTGTTTTATCAGCACCTTGTTTA----ATTTAAAATTGATTCAATGTCAACAGTCAAGGAGTTAACTCAGGAAACTAATTTATCCAG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877562 103 - 170124641 ATTTTGAATTTC----TTTGTCTTTTGTTTTATCAGCACCTTGTTTA----ATTTAAAATAGATTCAATGTCAACAGTCAAGGAGTTAACTCAGGAAACTAATTTATCCAG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147867911 107 - 171882078 ATTTTGAATTTCTTTATTTGTCTTTTGTTTTATCAGCACCTTGTTTA----ATTTAAAATAGATTCAATGTCAACAGTCAAGGAGTTAACTCAGGAAACTAATTTATCCAG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140794938 107 - 162156779 attttgaatttctttatttgtcttttgttttatcagcgccttgttta----atttaAAACAGATTCAATGTCAACAGTCAAGGAGTTAACTCAGGAAACTAATTTatccag
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183432 107 +  58131712 ATTTTGAATTTCTTTATTTGTCTTTTGTTTTATCAGCACCTTGTTTA----ATTTAAAATAGATTCAATGTCAACAGTCAAGGAGTTAACTCAGGAAACTAATTTATCCAG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991305 107 - 132174527 ATTTTGAATTTCTTTCTTTGTCTTTTGTTTTATCAGCACTTTGTTTA----ATTTAAAATAGATTCAATGTCAACAGTCAAGGAGTTTACTCAGGAAACTAATTTATCCAG
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110752  94 - 182113224 ATTTTGAAGTTCACTCTTTACCTTTTATTTCACCAGAGCCGTGTTCATATTATTTAAAAAAGACTCACGATCAATAGTCACTGAG-----------------CTTATCCAG
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e canFam3.chr30                 26802628  21 -  40214260 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36211838 342 -  36342412 I

a score=66870.000000
s hg38.chr14_KI270725v1_random    153355 18 +    172810 AAATGCAAA--TATTTTTGC
s panTro4.chrUn_GL393505          292778 18 +   1195001 AAATACAAG--TATTTTTGC
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792844 18 + 158137892 AAATACAAA--TATTTTTGC
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818078 18 +  72422247 AAATACAAA--TATTTTTGC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538024 18 + 121039945 AAATACAAA--TATTTTTGC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877665 18 - 170124641 AAATACAAA--TATTTTTGC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868018 18 - 171882078 AAATACAAA--TATTTTTGC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795045 18 - 162156779 aaatacaaa--tatttttgc
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183539 18 +  58131712 AAATACAAA--TATTTTTGC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991412 18 - 132174527 AAATACAAA--TGTTTTTGC
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58110846 19 - 182113224 CAATATAAAACCGTTCTAG-
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26802649  9 -  40214260 AAATGTAAG-----------
i canFam3.chr30                I 21 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36211838 342 -  36342412 I

a score=46.000000
s hg38.chr14_KI270725v1_random    153373 2 +    172810 AG
s panTro4.chrUn_GL393505          292796 2 +   1195001 AT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792862 2 + 158137892 AG
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818096 2 +  72422247 AT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538042 2 + 121039945 AT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877683 2 - 170124641 AT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868036 2 - 171882078 AT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795063 2 - 162156779 at
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183557 2 +  58131712 AT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991430 2 - 132174527 AT
i calJac3.chr10                C 0 C 0
s otoGar3.GL873530              36212180 1 -  36342412 G-
i otoGar3.GL873530             I 342 I 322
s mm10.chr2                     58110865 2 - 182113224 AG
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e canFam3.chr30                 26802658 0 -  40214260 C
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I

a score=30987.000000
s hg38.chr14_KI270725v1_random    153375 15 +    172810 ATAT--------TTTATCCTTTG
s panTro4.chrUn_GL393505          292798 15 +   1195001 ATAT--------TTTATCCTTTT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792864 15 + 158137892 ACAT--------TTTATCCTTTG
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818098 15 +  72422247 ATAT--------TTTATCCTTTG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538044 15 + 121039945 ATAT--------TTTATCTTTTG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877685 14 - 170124641 ATAT--------TTTATCCTTT-
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868038 14 - 171882078 ATAT--------TTTATCCTTT-
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795065 14 - 162156779 atat--------tttatccttt-
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183559 14 +  58131712 ATAT--------TTTATCCTTT-
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107991432 19 - 132174527 AAATATA----ATTTATCCTTTG
i calJac3.chr10                C 0 I 1300
s mm10.chr2                     58110867 19 - 182113224 ----GGATGGGAGTTACCCTTTG
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26802658 10 -  40214260 -------------TTACACTTTG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I

a score=346845.000000
s hg38.chr14_KI270725v1_random    153390 106 +    172810 TTTTAGATCCTTAATATGTA-ATTTCAAAAAATGAAATATGGACAGTTTGCTTGATTTCTGAGCATAGTCAATGAATAATTTTACCAAAATAAGCAAACATTTTTCG
s panTro4.chrUn_GL393505          292813 101 +   1195001 TT----ATCTTTAATATGTA-ATTTCTAAAAATGAAATATGGACAGTTTGCTTGATTTCTGAGCATAGTCAATGAGTAATTTTACCAAAAT-AGCAAACATTTTTCG
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792879  91 + 158137892 TT---------------TTA-ATTTCTAAAAATGAAATATGGACAGTTTGTTTGATTTCTGAGCATAGTCAATGAATAATTTTACCAAAATAAGCAAACATTTTTCG
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818113 105 +  72422247 TTTTAGATCTTTAATGTGTA-GTTTCTAAAAATGAAATATGGACAGTTTCCTTGATTTCTGAGCATAGTCAATGAATAATTTTACCAAAATAAGCAAACACTTTT-G
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538059 106 + 121039945 TTTTAGATCTTTAATATGTA-ATTTCCAAAAATGAAATATGGACAGTTTGCTTGATTTCTGAGCATAGTCAATGAATAATTTTACCAAAATAAGCAAACATTTTTCG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877699 103 - 170124641 ---TAGATCTTTAATATGTA-ATTTCTAAAAATAAAATGTGGACAGTTTGCTTGATTTCTGAGCATAGTCAATGAATAATTTTACAAAAATAAGCAAACATTTTTCG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868052 103 - 171882078 ---TAGATCTTTAATATGTA-ATTTCTAAAAATAAAATGTGGACAGTTTGCTTGATTTCTGAGCATAGTCAATGAATAATTTTACAAAAATAAGCAAACATTTTTCG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795079 103 - 162156779 ---tagATCTTTAATatgta-atttctaaaaataaaatatggacagTTTGCTTGATTTCTGAGCATAGTCAatgaataattttacaaaaataagcaaacatttttcg
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183573 103 +  58131712 ---TAGATCTTTAATATGTA-ATTTCTAAAAATAAAATATGGACAGTTTGCTTGATTTCTGAGCATAGTCAATGGATAATTTTACAAAAATAAGCAAACATTTTTCG
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58110886 106 - 182113224 CTTCAAGCCTCCAGGATTTATGTTTTGAAAAACAAAATATGCTCAATTTATTCAATCTGTAAACATGTATCACTAATAAGTTC-CCAGAATAAGCAATAATTCTTAG
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26802668  91 -  40214260 TTTTAGAACTCTAATCTATA-AATTCTAAAA--TAAGTTCGGGCAATTTTCTTGACTCCTGA-------------ATAATTTTACCAAAGAAAGCAAACATTTTTGG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=6243.000000
s hg38.chr14_KI270725v1_random    153496  7 +    172810 AGC---------tttt
s panTro4.chrUn_GL393505          292914  7 +   1195001 AGC---------tttt
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792970  5 + 158137892 AGC-----------tt
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818218  6 +  72422247 AGC----------ttt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538165 16 + 121039945 AGCttttttttttttt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877802  7 - 170124641 AGC---------TTCC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868155  7 - 171882078 AGC---------TTCC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795182  7 - 162156779 agc---------ttcc
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183676  7 +  58131712 AGC---------ttct
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58110992  7 - 182113224 AAC---------ATTT
i mm10.chr2                    C 0 I 2593
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e canFam3.chr30                 26802759  0 -  40214260 C
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=711032.000000
s hg38.chr14_KI270725v1_random    153503 243 +    172810 tttttttccttgagactgcgtcttgctctgtcacccaagttggag-tagggtggtgtgatcttggcacactgtaaactctgccttccacgttcaagcaattcttctgcctcagcctcctgattagctgagattacagttgcccaccaccacacccagctaa-ttttttttttttt-attattagacacggggtttcatcatgttggccaggctagtctccatctcctgacctcaagtgatccgccc
s panTro4.chrUn_GL393505          292921 242 +   1195001 tttttttccttgagactgagtcttgctctatcacccaggctggag-tggggtggtgtgatcttggcaaactgcaacctctgccttccaagttcaaggaattctcctgcctcagcctcctgattagctgagattatagttgcccaccaccacatccagcaaa-ttttttgtttttt--ttattagagacggggtttcaccatgttggccaggctggtctccaactcctgacctcaagtgatccaccc
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58792975 243 + 158137892 tttttttccttgagactgagtcttgctctatcacccaggttggag-tggggtggtgtgatcttggcacactgcaaactctgccttccaagttcaagcaattctcctgcctcagcctcctgattagctgagattacagttgcccaccaccacacccagctaa-ttttttgtttttt-ttaattagagactgggtttcatcatgttggccaggctagtctccaactcctgacctcaagtgatccgccc
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818224 244 +  72422247 tttttttccttgagactgagtcttgctctatcacccaggttggag-tagggtggtgtgatcttggcacactgcagcctctgccttccaagttcaagcaattctcctgcctcagcctcctgattagctgagattacagttgcccaccaccacacccaggtaa-ttttttgttttctttttattagagactgggtttcaccatgttggcctggctggtctccaactcctgacctcaagtgattcgccc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538181 242 + 121039945 tttttttccttgagactgagtcttgctctatcacccaggccggagatggggtggcatgatcttggcacactgcaacctctgccttccaagttcaagcaattctcctgcctcagcctcctgattagctgagattacagttgcccaccatcacacccagctaa-ttttttgtatttt---tattagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcct
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145877809 240 - 170124641 ttttttcccttgaga-tgagtcttgctctatcacccaggccagag-tggggtggcatgattttggcacactgcaacatctgccttccaagttcaagaaattctcctgcctcggcctcctgattagctgagattacaggtgcccaccaccacacccagctaa-ttttttgtatttt---tattagagacgaggtttcaccatgttggccaggctggtctcaaattcccgacctcaagtgatccgcct
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868162 240 - 171882078 ttttttcccttgaga-tgagtcttgctctatcacccaggccagag-tggggtggcatgattttggcacactgcaacatctgccttccaagttcaagaaattctcctgcctcggcctcctgattagctgagattacaggtgcccaccaccacacccagctaa-ttttttgtatttt---tattagagacgaggtttcaccatgttggccaggctggtctcaaattcccgacctcaagtgatccgcct
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795189 241 - 162156779 ttttttcccttgagactgagtcttgctctatcacccaggccggag-tggggtggcatgattttggcacactgcaacctctgccttccaagttcaagaaattctcctgcctcggcctcctgattagctgagattacaggtgcccaccaccacacccagctaa-ttttttgtatttt---tattagagacgaggtttcaccatgttggccaggctggtctcaaattcccgacctcaagtgatccgcct
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183683 242 +  58131712 tttttttccttgagactgagtcttgctctatcacccaggcccgag-tagggtggcatgattttggcacactgcaacctctgccttccaagttcaagaaattctcctgcctcagcctcctgattagctgagattacaggtgcccaccaccacacccagctaatttttttgtatttt---tattagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatccgcct
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9118892 4414 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26802759   0 -  40214260 C
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=1302.000000
s hg38.chr14_KI270725v1_random    153746 1 +    172810 a
s panTro4.chrUn_GL393505          293163 1 +   1195001 a
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9123306 1 -  12672142 g
i panPan1.JH650621             I 4414 I 458
s gorGor3.chr7                  58793218 1 + 158137892 a
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818468 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538423 1 + 121039945 g
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878049 1 - 170124641 g
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868402 1 - 171882078 g
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795430 1 - 162156779 g
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183925 1 +  58131712 g
i chlSab2.chr26                C 0 C 0
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26802759 0 -  40214260 C
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=160794.000000
s hg38.chr14_KI270725v1_random    153747 55 +    172810 cttcgacctcccaaagtgctgggattacaggcataagccaccacgcctggccTGG
s panTro4.chrUn_GL393505          293164 55 +   1195001 cctcgacctcccaaaatgttgagattacaggcataagccaccacgcccggccTGG
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793219 55 + 158137892 cttcgacctcccaaagtgctgggattacaggtataagccaccacgcccggccTGG
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818469 55 +  72422247 cctcgacctcccaaagtgctgagattacaggtgtaagccaccatgcccagccTGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538424 55 + 121039945 ccttggcctcccaaagtgttgggattacaggtataagccaccacacctggccTGG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878050 55 - 170124641 cctcagcctcccgaagtgctgggattacaggcgtgagccaccacgcctggccTGG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868403 55 - 171882078 cctcagcctcccgaagtgctgggattacaggcgtgagccaccacgcctggccTGG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795431 55 - 162156779 cctcagcctcccgaagtgctgggattacaggcgtgagccaccacgcctggcctgg
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183926 55 +  58131712 cctcagcctcctgaagtgctgggattacaggcgtcagccaccatgcctggccTGG
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26802759  0 -  40214260 C
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=177359.000000
s hg38.chr14_KI270725v1_random    153802 65 +    172810 AGCATTTTGATATAATGAATTACTGATGAAACCTTTTAATATAATGTTAGACAGCCCATTTAAAA----
s panTro4.chrUn_GL393505          293219 65 +   1195001 AGCTTTTTGATATAATGAATTACTGGGGAAACCTTTTAATATAATCTTAGACAGCCCATTTAAAA----
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793274 65 + 158137892 AGCATTTTGATATAATGAATTACTGATGAAACCTTTTAATATAATGTTAGACAGCCCATTTAAAA----
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818524 61 +  72422247 AGCATTTTGATATAATGAATTACTGGGGAAACCTTTTAATATAATGTG----AGCCCATTTAAAA----
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538479 65 + 121039945 ACCATTTTGATATGATGAATTACTGGGGAAACCTTTTAATATAATGTTAGACAGTCCATTTAAAA----
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878105 61 - 170124641 AGCTTTTAGATTTAATGAATTACTGGGGAAACCTTTTAATATAATGTT----AGACCATTTAAAA----
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868458 61 - 171882078 AGCTTTTAGATTTAATGAATTACTGGGGAAACCTTTTAATATAATGTT----AGACCATTTAAAA----
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795486 61 - 162156779 agcTTTTAGATTTAATGAATTACTGGGGAAACCTTTTAATATAATGTT----AGACCATTTAAAA----
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36183981 61 +  58131712 AGCATTTTGATTTAATGAATTACTGGGGAAACCTTTTAATATAATGTT----AGATGATTTAAAA----
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26802759 67 -  40214260 AACATTTTTAGATAATGAATAACGGAGAAAGTTTTTTA--AAAATGTTAGTGATTCTATTTAAATAAAG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               89138 1554 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=20400.000000
s hg38.chr14_KI270725v1_random    153867 7 +    172810 ATAATCC
s panTro4.chrUn_GL393505          293284 7 +   1195001 AGAATCC
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793339 7 + 158137892 ATAATCC
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818585 7 +  72422247 AGAATCC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538544 7 + 121039945 AGAATCC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878166 7 - 170124641 AGAATCC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868519 7 - 171882078 AGAATCC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795547 7 - 162156779 AGAATCC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184042 7 +  58131712 AGAATCC
i chlSab2.chr26                C 0 C 0
s tarSyr2.KE933570v1               90692 4 +    145891 -GCAC--
i tarSyr2.KE933570v1           I 1554 I 7249
s canFam3.chr30                 26802826 7 -  40214260 AGAATCT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=14096.000000
s hg38.chr14_KI270725v1_random    153874 8 +    172810 AGTATAAT
s panTro4.chrUn_GL393505          293291 8 +   1195001 AGTATAAT
i panTro4.chrUn_GL393505       C 0 I 1616
s gorGor3.chr7                  58793346 8 + 158137892 AGTATAAT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818592 8 +  72422247 AGTATAAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538551 8 + 121039945 AGTAGAAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878173 7 - 170124641 AGTA-AAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868526 7 - 171882078 AGTA-AAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795554 7 - 162156779 AGTA-AAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184049 7 +  58131712 AGTA-AAT
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26802833 8 -  40214260 GCCAAAAT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=378253.000000
s hg38.chr14_KI270725v1_random    153882 120 +    172810 TATTATGTTCTTTATATGACTACATTTCACAGTGAAGTA----ACTTAGCACTCTGTATTTATAATGCTTTGAAA-ATACATATTAGTTGCTGATTTTATATTCCAAACAGAAATTATAGGACAT
s panTro4.chrUn_GL393505          294915 120 +   1195001 taTTATATTCTTTATATGACTACATTTCACAGTGAAGTA----ACTTAGCACTCTGTATTTATAATGCTTTGAAA-ATACATATTGGTTGCTGATTTTGTATTCCAAACAGAAATTATAGGACAC
i panTro4.chrUn_GL393505       I 1616 C 0
s gorGor3.chr7                  58793354 120 + 158137892 TATTATATTCTTTATATGACTACATTTCACAGTGAAGTA----ACTTAGCACTCTGTATTTATAATGCTTTGAAA-ATTCATATTAGTTGCTGATTTTATATTCCAAACAGAAATTATAGGACAC
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818600 120 +  72422247 TATTATATTCTTTATATGACTACATTTCACAGTGAAGTA----ACTTAGCACTCTGTATTTATAATGCTTTGAAA-ATACATATTTGTTGCTGATTTTATACTCCAAACAGAAATTATAGGACAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538559 124 + 121039945 TATTATAGTCTTTATATGACTACATTTCACACTGAAGTCACTTACTTAGCACTCTTTATTTATAATGTTTTGAAA-ATACATATTAGTTGCTGATTTTATATTCCAAACAGAAATTATAGGACAC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878180 113 - 170124641 TAGTATATTCTTTATATG---ATATTTCACACTGAAGTC----TCTTAGCACTC----TTTATAATGTTTTGAAA-CTACATATTAGTTGCTGATTTTATATTCCAAACAGAAATTATAGGACAC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868533 117 - 171882078 TAGTATATTCTTTATATG---ATATTTCACACTGAAGTC----TCTTAGCACTCTTTATTTATAATGTTTTGAAA-CTACATATTAGTTGCTGATTTTATATTCCAAACAGAAATTATAGGACAC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795561 117 - 162156779 TAGTATATTCTTTATATG---ATATTTCACACTGAAGTC----ACTTAGCACtctttatttataatgttttgaaA-CTACATATTAGTTGCTGATTTTATATTCCAAACAGAAATTATAGGACAC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184056 117 +  58131712 TAGTATATTCTTTATATG---ACATTTCACACTGAAGTC----ACTTAGCACTCTTTATTTATAATGTTTTGAAA-CTACATATTAGTTGCTGATTTTATATTCCAAACAGAAATTATAGGACAC
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26802841 120 -  40214260 TATTGCATTCTTTATATGACAGCATTTTACATTAAATTT----ACTTAGTACCACTCATTTGCAGTATTTTAAAATATCTATATTGGTTAATGATTTTATATGCT-AACAGAATAGATAAGGCAC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212181 322 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=2362.000000
s hg38.chr14_KI270725v1_random    154002 2 +    172810 CT
s panTro4.chrUn_GL393505          295035 2 +   1195001 CA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793474 2 + 158137892 CA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818720 2 +  72422247 CA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538683 2 + 121039945 CA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878293 2 - 170124641 TA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147868650 2 - 171882078 TA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795678 2 - 162156779 CA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184173 2 +  58131712 CA
i chlSab2.chr26                C 0 C 0
s otoGar3.GL873530              36212503 1 -  36342412 -G
i otoGar3.GL873530             I 322 I 2360
s canFam3.chr30                 26802961 2 -  40214260 TG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=168291.000000
s hg38.chr14_KI270725v1_random    154004 49 +    172810 ---TATTATATAAACACAAGAATTCAATATCAATTTTCACACTTTAAAACAA
s panTro4.chrUn_GL393505          295037 49 +   1195001 ---TATTATATAAACACAGGAATTCAATATTAATTTTCACACTTTAAAACAA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793476 49 + 158137892 ---TATTATATAAACACAAGAATTCAATATCAATTTTCACACTTTAAAACAA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818722 49 +  72422247 ---TATTATATAAACACAAGTATTCAATATTAGTTTTCACACTTTAAAACAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538685 49 + 121039945 ---TATTATATAAACACAATAATTCAATATTAATTTTCACACTTTAAAACAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878295 49 - 170124641 ---TATTATATAAACACAAGAATTCGGTATTAATTTTCACACTTTAAAACAA
i rheMac3.chr7                 C 0 I 302
s macFas5.chr7                 147868652 49 - 171882078 ---TATTATATAAACACAAGAATTCGGTATTAATTTTCACACTTTAAAACAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795680 49 - 162156779 ---TGTTATACAAACACAAGAATTCAGTATTAATTTtcacactttaaaacaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184175 49 +  58131712 ---TATTATATAAAGAAAAGAATTCAGTATTAATTTTCACACTTTAAAACAA
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26802963 52 -  40214260 TAGTATCAATTAAACATGATAATTCAATATTTATTTTCATATTTTACAGCAA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=14421.000000
s hg38.chr14_KI270725v1_random    154053 7 +    172810 TAGTCTT
s panTro4.chrUn_GL393505          295086 7 +   1195001 TAATCTT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793525 7 + 158137892 TAATCTT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818771 7 +  72422247 TAATCTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538734 7 + 121039945 TAATCTT
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147868701 7 - 171882078 CAATGTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795729 7 - 162156779 caatgtt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184224 7 +  58131712 CAATGTT
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26803015 7 -  40214260 TAAGCTT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e rheMac3.chr7                 145878344 302 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=262959.000000
s hg38.chr14_KI270725v1_random    154060 123 +    172810 ggccctgcgcggtggcttgcgcctgtattcccagcactttggaaggtggaggcaggcggatcacgaggtcagaagattgagaccatcctgactaacaaggtgaaaccccgtctctaataaaaa
s panTro4.chrUn_GL393505          295093 123 +   1195001 ggccttgagcattggcttgtgcctgtattcccagcactttgggaggtcgaggcaggcggatcacaaggtcagaagattgagaccatcctggctaacacggtgaaaccccgtctctaataaaaa
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793532 123 + 158137892 ggccctgtgcggtggcttgcgcctgtattcccagcactttgggaggtcgaggcaggcggatcacgaggtcagaagattgagaccatcctggctaacaaggtgaaaccccgtctctaataaaaa
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818778 123 +  72422247 ggccttgtgcagcggctcgtgcctgtatccccagcactttgggaggtcgaggcaggcagatcacgaggtcagaagattgagaccatcctgaataacacgatgaaaccctgtctctaataaaaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538741 123 + 121039945 ggccgggcgtggtggctcgcgcctgtaatcccagcactttgggaggccgaggcaggtggatcaccaggtcagaagattgagaccatcctggctaacacagtgaaaccacgtctctaataaaaa
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147868708 123 - 171882078 Agccaggcacggtggctggcgcctgtaatcccagcactttgggaggccggggcgggtggatcacgaggtcagaagattgagaccatcctggttaacacggtgaaagcatgtctctactaaaaa
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795736 123 - 162156779 agccaggcacggtggctggcgcctgtaatcccagcactttgggaggccggggcgggtggatcacgaggtcagaagattgagaccatcctggttaacacggtgaaagcctgtctctactaaaaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184231 123 +  58131712 ggccaggtacggtggctggccgctgtaatcccaccactttgggaggccggggtgggcggatcacgaggtcagaagattgagaccatcctggttaacacggtgaaagcctgtctctactaaaaa
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26803022   0 -  40214260 C
e rheMac3.chr7                 145878344 302 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=15355.000000
s hg38.chr14_KI270725v1_random    154183  7 +    172810 t---aaaaaa
s panTro4.chrUn_GL393505          295216  7 +   1195001 t---acaaaa
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793655  7 + 158137892 t---acaaaa
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818901  7 +  72422247 t---acaaaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538864 10 + 121039945 caaaacaaaa
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147868831  7 - 171882078 t---acaaaa
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795859  7 - 162156779 t---acaaaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184354  7 +  58131712 t---acaaaa
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26803022  7 -  40214260 T---AAAAAA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e rheMac3.chr7                 145878344 302 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=-10128.000000
s hg38.chr14_KI270725v1_random    154190  3 +    172810 aaa-------------------
s panTro4.chrUn_GL393505          295223  3 +   1195001 aaa-------------------
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793662  3 + 158137892 aaa-------------------
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818908  3 +  72422247 aaa-------------------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538874  3 + 121039945 caa-------------------
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147868838 22 - 171882078 aaaaaaaaaaaaaagaaaaaaa
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795866 19 - 162156779 aaaaaaaaaaaa---aaaaaaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184361  9 +  58131712 aa-------------aaaaaaa
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2049629 13975 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26803029  0 -  40214260 C
e rheMac3.chr7                 145878344 302 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=-23442.000000
s hg38.chr14_KI270725v1_random    154193 2 +    172810 --a-------t
s panTro4.chrUn_GL393505          295226 9 +   1195001 --aaaaaaatt
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793665 8 + 158137892 --aaaaaatt-
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818911 5 +  72422247 --aaatt----
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538877 8 + 121039945 --aaaaaatt-
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147868860 1 - 171882078 -t---------
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140795885 1 - 162156779 -t---------
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36184370 1 +  58131712 -t---------
i chlSab2.chr26                C 0 I 1
s rhiRox1.KN300076v1             2063604 2 +   2481265 at---------
i rhiRox1.KN300076v1           I 13975 I 9481
e panPan1.JH650621               9123307 458 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26803029 0 -  40214260 C
e rheMac3.chr7                 145878344 302 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=3276.000000
s hg38.chr14_KI270725v1_random    154195 1 +    172810 a
s panTro4.chrUn_GL393505          295235 1 +   1195001 a
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9123765 1 -  12672142 a
i panPan1.JH650621             I 458 I 297
s gorGor3.chr7                  58793673 1 + 158137892 a
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5818916 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538885 1 + 121039945 a
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147868862 1 - 171882078 a
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140795887 1 - 162156779 a
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36184372 1 +  58131712 a
i chlSab2.chr26                I 1 C 0
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26803029 0 -  40214260 C
e rheMac3.chr7                 145878344 302 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=19643.000000
s hg38.chr14_KI270725v1_random    154196 9 +    172810 gcctggcgt
s panTro4.chrUn_GL393505          295236 9 +   1195001 gccgggcat
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58793674 9 + 158137892 gcctggcgt
i gorGor3.chr7                 C 0 I 16611
s ponAbe2.chrUn                  5818917 9 +  72422247 gccgggcat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538886 9 + 121039945 gccaggcgt
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147868863 9 - 171882078 gccgggcat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795888 9 - 162156779 gccgggcat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184373 9 +  58131712 gccgggcat
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9123766 297 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26803029 0 -  40214260 C
e rheMac3.chr7                 145878344 302 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=226203.000000
s hg38.chr14_KI270725v1_random    154205 138 +    172810 ggtggcgggtgcctgtagtccc-gctactagagaggctgaggcaggagaatggcacgaagccaggaggctgagctcgcagtgagccgagatggcgccactgcactccagcctggatgacacagcgagactccgtct-caa
s panTro4.chrUn_GL393505          295245 138 +   1195001 gttggcaggtgcctgtagtccc-gctactcgagaggctgaggctggagaatggcatgaacccaggaggctgagctcacagtaagctgagatggcgccactgcactccagcctggatgacacagcaagactccatct-caa
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5818926 138 +  72422247 ggtggcaggcgcctgtagtccc-actactcgagaggctgaggcaagagaatggcatgaaccctggaggctgagctcgcagtgagccaagatggtgccactgcactccagcctggatgacacagcaagactccatct-caa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53538895 138 + 121039945 ggtggcgggcacctgtagtccc-actagtcgggaggctgaggcaggagaatggcatgaacccgggaggcggagctcgcagtgagccgagatggcgccactgcactccagcctgggcgacagaacaagactccgtct-caa
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147868872 139 - 171882078 ggtggtgggcgcctgtagtcccagctactcgggagactaaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagtcgagatggcaccactgcactccagcctgggcgacagagtaagactctgtct-caa
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140795897 139 - 162156779 ggtggtgggcgcctgtagtcccagctactcaggagactgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagtcgagatggcaccactgcactccagcctgggcgacagagcgagactctgtct-caa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184382 140 +  58131712 ggtggcgggcgcctgtagtcccagctactcgggagactgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagtcgagatggcaccactgcactccagcctgggcgacagagcgagactccgtctacta
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9123766 297 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26803029   0 -  40214260 C
e rheMac3.chr7                 145878344 302 - 170124641 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=35672.000000
s hg38.chr14_KI270725v1_random    154343 24 +    172810 aaaaaaaaaaaaaaaa--------CTTTTCAA
s panTro4.chrUn_GL393505          295383 32 +   1195001 aaaaaaaaaaaaaaaaaaaaaaaaCTGTTCAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5819064 21 +  72422247 aaaaaaaaaaaaT-----------CTTTTCAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53539033 20 + 121039945 aaaaaaaaaaaa------------GTTTTCAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878646 24 - 170124641 AAAAAAAAAAAAAACA--------CTTTTCAA
i rheMac3.chr7                 I 302 C 0
s macFas5.chr7                 147869011 21 - 171882078 ---aaaaaaaaaaaCA--------CTTTTCAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140796036 23 - 162156779 -aaaaaaaaaaaaaca--------cttttcaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184522 24 +  58131712 aaaaaaaaaaaaaCAA--------CTTTTCAG
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9123766 297 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26803029  0 -  40214260 C
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=338395.000000
s hg38.chr14_KI270725v1_random    154367 133 +    172810 TTTTTAAAATTTTTCTCAAACTACCCATCAGAGAAGTT-TAACATCTCCATTTACATTTCTATGATGTTATACAGAAATATTTTATTTCTCTCCCCAGAATAATATAGGCAAAATCTCTCCCTCTGACTATACA
s panTro4.chrUn_GL393505          295415 133 +   1195001 TTTTTAAAATTTTTCTCAAACTACTCATCAGAGAAGTT-TAACATCTCCATTTACATTTCTATGATGTTATATGGAAATATTTTATTCCTTTCCCCAGAATAACAGAGGCAAAATCTCTCCCTCTGACTATACA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5819085 133 +  72422247 TTTTTAAAATTTTTCTCAAACTACCCATCAGAGAAGTT-TAACATCTCCATTTACATTTCTATGATGTTATACAGAAATATTTTATTTCTTTCCCCAGAATAATATAAGCAAAATCTCTCCCTCTGACTATACA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53539053 134 + 121039945 TTTTTAAAATTTTTCTCAAACTACCCATTGGAGAAGTTAAAACATCTCCATTTACATTTCTACAATGTTATACAAAAATATTTTCTTTCTTTCCCCAGAATAATATGGGCAAAATCTCTTCCTCTGACTATACA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878670 134 - 170124641 TTTTAAACATTTTTCTCAAACTACCCATTGGAGAAGTTAAAATATCGCCATTTACATTTCTATGATGTTATACAAAAATATTTTATTTCTTTCCCCAGAATAACATGGGCAAAATCTCTCCCTCTGACTATACA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147869032 134 - 171882078 TTTTAAACATTTTTCTCAAACTACCCATTGGAGAAGTTAAAATATCGCCATTTACATTTCTATGATGTTATACAAAAATATTTTATTTCTTTCCCCAGAATAACATGGGCAAAATCTCTCCCTCTGACTATACA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140796059 134 - 162156779 ttttaaacatttttctcaaaCTACCCATTGGAGAAGTTAAAATATTGCCATTTACATTTCTATGatgttatacaaaaatattttatttctttccccagAATAACATGGGCAAAATCTCTCCCTCTGACTATACA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184546 134 +  58131712 TTTTAAACATTTTTCTCAAACTACCCACTGGAGAAGTTAAAATATCGCCATTTACATTTCTATGATGTTATACAAAAATATTTTATTTCTTTCCCCAGAATAACACGGGCAAAATCTCTCCCTCTGACTATACA
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26803029 119 -  40214260 TTCTTCTAAGCTTTATCTTGCTGCTCATTAGAACAGTTAAAATATCTCTATTTACATTTCCAAGATGATAAACAAA------TCTTTTCTTTCACTAGAATAAAATGGGCAAAATCTTTCTC-------ATA--
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9123766 297 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=14076.000000
s hg38.chr14_KI270725v1_random    154500 4 +    172810 CACC
s panTro4.chrUn_GL393505          295548 4 +   1195001 CACC
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9124063 4 -  12672142 CACC
i panPan1.JH650621             I 297 I 4650
s ponAbe2.chrUn                  5819218 4 +  72422247 CACC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53539187 4 + 121039945 CACC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878804 4 - 170124641 CACC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147869166 4 - 171882078 CACC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140796193 4 - 162156779 CACC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184680 4 +  58131712 CACC
i chlSab2.chr26                C 0 C 0
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26803148 0 -  40214260 C
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=1709132.000000
s hg38.chr14_KI270725v1_random    154504 670 +    172810 TGGTATTGTTACTTTAATTGTTTAAGGATTTCTATCTCT-TCCTATTCTGAATGATTACTCTCTTTTT-GAGCTTTCTTGCAGTAACCGTTT--TAAATAGTCTCTAGACAACTTTCTGGATTCTAGGATCCACATTAATCTTCCTGCCATTGCACTTTCTGTCTTCTCCAAGAGTCTAGCTTTTATGAGAACAAAATAGTCATATCTTCTTTAGA-----GAAGA-----------GTTTCCAGTGTAAAGAC-TAAAAGTTTAAGTTAATTGTAAATGAAAGACTCCAGTTAGAGGAGAAAATATTTCATTTTCAGATGACTGTTTCAGAACACAATTACTATATTGAAGACGACTCTCACTATAG-CCACAATAATTACATCTATTTCAATTTAAGGAGACACAGCAACAAATCTTACCTCTCTGAAAAGAAA-TCAAATCTGAAA-CATGGTGGAGAAGTATGAGTCCTGACCAAGAGATTTTCTTGGAAGACATAGATTGACTTGTAGCAAATGTTATCTGAAGTAATAAAATCTTACACTTTA-TTTTTATAGAAAACAGAC-AATAAAAATCTTTCTAAATTAATGCATAGGTACTTT-TGTAAAAATAACG-TAAAAATGTCTGATTAACTTAGATACATAAGTTATTTAAGTTCCAAAATAAAG-----------AATTAGAGAAGTTTATAGTTTGTCT----
s panTro4.chrUn_GL393505          295552 667 +   1195001 TGGTATTGTTATTTTAATTGTTTAAGGGTTTCTATCTCT-TCCTATTCTGAATGATTAGTCTCTTTTG-GAGCTTTCTTGCAGTAACCACTT--TAAATAGTCTCTAGACAAATTTCTAGATTGTAGGATCCACATTAATCTTCCTGCCGTTGCAGTTTCTGTCTTCTCCAAGACTCTAGCTTTTATGAGAACAAAATAGTCATATCTTCTTTAAA-----GAAGA-----------GTTTCCAGTGTAAAGAC-TAAAA-TTTAAGTTAATTGTAAATGAAAGACTCCAGTTAGAGGAGAAAATATTTCATTTTAAGATGAATGTTTCAGAACACAATTACTATATTGAAGATGACTCTCACTATAG-CCACATTAATTACATCTATTTAAATTTAAGGAGACACAGCAACAAATCTTACCTCTCTGAAAAGAAA-TCAAATCTGAAA-CATGGTGGAGAAGTATGAGTCCTGACCAAGAGATTTTCTTGGAAGACATAGATTGACTTATAGCAAATGTTATCTGAAGTAATACAATCTTAC--TTTA-TTTTTATAGAAAAGAGAC-AATAAAAATCTTTCTAAATTAATGCATAGGTACTTT-TGTAAAAATAACA-TAAAAATATCTGATTAACTTAGCTACATAAGTTCTTTAAGTTCCAAAATAAAG-----------AATGAGAGAAGTTTGTAGTTTGTCT----
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5819222 670 +  72422247 TGGTATTTTTATTTTAATTGTTTAAGGGTTTCTATCTCT-TCCTATTCTGAATGATTATTCTCTTTTT-GAGCTTTCTTCCAGTAACCATTT--TAAATAGTCTCTAGACAACTTTCTAGATTCTAGTATCCGCATTAATCTTCCTGCCGCTGCAGTTTCTGTCTTCTCCAAGAATCTAGCTTTTATGAGAACAAAATAGTCATATCTTCTTTAAA-----GAAGA-----------GTTTCCAGTGTAAGAAC-TAAAAGTTTAAGTTAATTGTAAATGAAAGACTCCAGCTAGAGGAGAAAATATTTCATTTTAAGATGAATGTTTCAGAATACAATTACTATATTGAAGATGAATCTCACTATGG-CCACATTAATTACATCTATTTCAATTTAAGGGGACACAGTAACAAATCTTACCTCTCCGAAAAGAAA-TCAAATCTGAAA-TATGGTGGAGAAGTATGAGCCCTGACCAAGAGAATTTCTTGGAAGGCATAGATTGACTTATAGCAAATGTTATCTGAAGTAGTAAAATCTTACGCTTTA-TTTTTATAGAAAACAGAC-AATAAAAATCTTTCTAAATTAATGCACAGGTACTTT-TGTAAAAATAACA-TAAAAATATCTGATTAACTTAGATACATAAGTTCTTTAAGTTCCAAAATAAAG-----------AATGAGAGAAGTTTATAGTTTGTCT----
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53539191 664 + 121039945 TGGTATTGTTATTTTAATTGTTTAAGGGTTTCTATCTCT-TCCTATTCTGAATGATTATCCTCTTTTT-GAGCTTTCTTGCAGTAACCGTTT--TAAATAGTCTCTAGACAACTTTCTAGACTCTAGGACCCACACTAATCTTCCTGCCATTGCAGTTTCTGTCTT-TCCAAGAGTCTAGCTTCTATGAGAACATAATAGTCACATCTTCTTTAAA-----GAAGA-----------GTCTCCAGTGTAAAGAC-TAAAAGTTTAAGTTAATTGTAAATGAAAGATTCCAGTTAGAGGAGAAAATATTTCATTTTAAGATGAATGTTTCAGAACACAATTACTATA-TGAAGATGATTCTCACTATAG-CCACGTTAATTACGTCTATTTCAATTTAAGG-GACACAGTAACAAATCTTACCTCTCTGAAAAGAAA-TCAAACCTGAAA-CATGGT---GAAGCATGATCCCTGACCAAGAGATTTTCTTGGAAGACATGGATTGACTTATAACAAATGTTATCTGAAGTAGTAAAATCTTACACTTTA-TTTTTATAGAAAACACGC-AATAAAAATCTTTCTAAATTAATGCATAGGTACTTT-TGTAAAAATAACA-TAAAAATATCTGATTAACTTAGATACACAAGTTCTTTAAGTTCCAAAATAAAG-----------AATGAGAGACGTTTATAGTTTGTCT----
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145878808 661 - 170124641 TGGTATTGTGACTTTAATTGTTTACGGGTTTCTATCTCT-TCCTGTTCTGAATGATTATTCTCTTTTT-GAGCTTTCTTGCCATAACTGTTT------TGGTCTCTAGACAACTTTCTAGACTCCAGGACCCACATTAATCTTCCTGCCACTGCAGTTTCTGTCTTCTCCAAGAATCTAGCTTCTACGAGAACAGAATACTCACATCTTCTTTAAA-----GAAGA-----------GTTTCCAGTGTAAAGACTTAAAAGTTTAAGTTAATTGTAAATGAAAGATTCCAGTTAGAGGAGAAAACATTTAATTTT-------ATGTTTCAGAACACAATTACTATATTAAAGATGAATCTCACTATAG-CCACATTAATTACGTCTATTTCAATTTAAGGGGACACAGTAACAAATCTTACCTCTCTGAAAAGAAA-TCAAACCTGAAA-CATGGTGGAGAAGCATGAGCCCTGACCAAGAGATTTTCTTGGAAGACATAGATTAACTTATAACAAATGTTATCTGAAGTAGTAAAATCTTACACTTTATTTTTTTTAGAAAACAGGC-AGTAAAAATCTTTCTAAATTAATGCATAGGTACTTT-TGTGAAAATAACA-TAAACACATCTGATTAACTTAGATACACAAGTTCTTTAAATTCCAAAATAAAG-----------AATGAGAGAAGTTTATAGTTTGTCT----
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147869170 668 - 171882078 TGGTATTGTGACTTTAATTGTTTACGGGTTTCTATCTCT-TCCTGTTCTGAATGATTATTCTCTTTTT-GAGCTTTCTTGCCATAACTGTTT------TGGTCTCTAGACAACTTTCTAGACTCCAGGACCCACATTAATCTTCCTGCCACTGCAGTTTCTGTCTTCTCCAAGAATCTAGCTTCTACGAGAACAGAATACTCACATCTTCTTTAAA-----GAAGA-----------GTTTCCAGTGTAAAGACTTAAAAGTTTAAGTTAATTGTAAATGAAAGATTCCAGTTACAGGAGAAAACATTTAATTTTAAGATGAATGTTTCAGAACACAATTACTATATTAAAGATGAATCTCACTATAG-CCACATTAATTACGTCTATTTCAATTTAAGGGGACACAGTAACAAATCTTACCTCTCTGAAAAGAAA-TCAAACCTGAAA-CATGGTGGAGAAGCATGAGCCCTGACCAAGAGATTTTCTTGGAAGACATAGATTAACTTATAACAAATGTTATCTGAAGTAGTAAAATCTTACACTTTATTTTTTTTAGAAAACAGGC-AGTAAAAATCTTTCTAAATTAATGCATAGGTACTTT-TGTGAAAATAACA-TAAACACATCTGATTAACTTAGATACACAAGTTCTTTAAATTCCAAAATAAAG-----------AATGAGAGAAGTTTATAGTTTGTCT----
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140796197 668 - 162156779 TGGTATTGTGACTTTAATTGTTTAAGGGTTTCTATCTCT-TCCTATTCTGAATGATTATTCTCTTTTT-GAGCTTTCTTGCCATAACTGTTT------TGGTCTCTAGACAACTTTCTAGACTCCAGGACCCACATTAATCTTCCTGCCACTGCAGTTTCTGTCTTCTCCAAGAGTCTAGCTTCTACGAGAACAGAATACTCACATCTTCTTTAAA-----GAAGA-----------GTTTCCAGTGTAAAGACTTAAAAGTTTAAGTTAATTGTAAATGAAAGATTCCAGTTAGAggagaaaacatttaattttaagatgAATGTTTCAGAACACAATTACTATATTAAAGATGAATCTCACTATAG-CCACATTAATTACGTCTATTTCAATTTAAGGGGACACAGTAACAAATCTTACCTCTCTGAAAAGAAA-TCAAACCTGAAA-CATGGCAGAGAAGCATGAGCCCTGACCAAGAGATTTTCTTGGAAGACATAGATTGACTTATAACAAATGTTATCTGAAGTAGTAAAAtcttacactttattttttttagaaaacaggc-agtaaaaatctttctaaattaATGCATAGGTACTTT-TGTGAAAATAACA-TAAACACATCTGATTAACTTAGATACACAAGTTctttaaattccaaaataaag-----------AATGAGAGAAGTTTATAGTTTGTCT----
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36184684 663 +  58131712 TGGTATTATGACTTTAGTTGTTTAAGGGTTTCTATCTCT-TCCTATTCTGAATGATTATTCTCTTTTT-GAGCTTTCTTGCCATAACTGTTT------TTGTCTCTAGACAACTTTCTAGACTCTAGGACTCACATTAATCTTCCTGCCACTGCAGTTTCTGTCCTTTCTAAGAGTCTAGCTTCTACGAGAACAGAATAGTCACATCTTCTTTAAA-----GAAGA-----------GTTTCCAGTGTAAAGAC-TAAAAGTTTAAGTTAATTGTAAATGAAAGATTCCAGTTAGAGGAGAAAACATTTAATTTTAAGATGAATGTTTCAGAACACACTTACTATATTGAAGATGAATCTCACTATAG-CCACATTAATTACGTCTCTTGCAATTTAAGGGGACACAGTAACAAATCTTACCTCTCTGAAAAGAAA-TCAAACCTGAAA-CATGGTGAAGAAGCATGAGCTCTGACCAAAAGATTTTCTTGGAAGACATAGATTGACTTATAACAAATGTTATCTGAAGTAGTAAAATCTTACACTTTA-TTTTTTTAGAAAACAGGC-AGTAAAAATCTTTCTAAATTAATGCATAGGTACTTT-TGTGAAAATAACA-TAAACATATCTGATTAACTTAGATACACAAGTTCTTTAAGTTCCAAAATAAAG-----------AATGAG---AGTTTATAGTTTGTCT----
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26803148 689 -  40214260 ---TGTTGTGATTTTAATAGCTTAAGTTTCTCTCCCTCTAGCCTGTGGTGAATTTTAATTCTTTTTTTCGAGCCTCATCTTAGTGACTAATGACCATTCAGGTTCCATCTAACTTTCTGCAGTGCAGGTCCCAAATTAGCCTTCCTGCCCTAACAGTTTC----------AAGGGTCTAGCTCTTATGAGAACAAAACAGTCACATGTTTTTCAAACTAATGAAGAATTTTTGGCCCATTTCCAGTATAGAAAC--AAAAATATAATTTAAGTATAAGGTAAAGATTCCAATTAGAGGAGAGA------CATTTGAAGATGAATGTTTCAAAATACAACTGCTGTGTTGATG-TGAATCTGGTTATGGACCACATTAATTATGCTTATTT-GTTTTGAAGATACAGAGTAACAGGTCATATCTTCTTGAAACGAAATTCAGACCTAAAACCATGGTGGTGAAATGTGAGGCCTAAGCAAGACATATTTGTGGAAGACATGGACTAATCCATAACAAATATCACTTGAAGTAGTAAAATCACAAACTTCA-TTTATTTAGAAAACATACAAGTAAGAAGTTTCCTAAATTTATACATATATACTTTCTGTGTAAATCATATTACAAGAGTCTGATTAATATAGATATATACATTATTTAAGTTCTAAAGTAACGTTATATTCACTTAAGAGAGAAGCTTTTGGCTAGTTACTCT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10785133 4244 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=13005.000000
s hg38.chr14_KI270725v1_random    155174 4 +    172810 GACT
s panTro4.chrUn_GL393505          296219 4 +   1195001 GACT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5819892 4 +  72422247 GACT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53539855 4 + 121039945 GACT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145879469 4 - 170124641 GACT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147869838 4 - 171882078 GACT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140796865 4 - 162156779 gact
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36185347 4 +  58131712 GACT
i chlSab2.chr26                C 0 C 0
s saiBol1.JH378136              10789377 2 +  21366645 --CT
i saiBol1.JH378136             I 4244 I 13573
s canFam3.chr30                 26803837 4 -  40214260 GACA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=930148.000000
s hg38.chr14_KI270725v1_random    155178 386 +    172810 -------------------------TGTATTCTTTTT-GACCCATAATTAATTCCATAGATAGAATAATTTATAATGTAACTTTAATCATTACAACCTTTGATCAAAAATATACAGATATTCTTAATTTTTCTTCTC---ATATTTACTTAAATTATTTTTCATCGCTTTAATATTTCTTTATTCACTGGTCCCACAATAGTTCACTAAGTTTGGTATTTCTTGGTTTTGT---AAAAAATTTCCCAATTCAGCTCCTGAGCACA---ATT---AGT-ACTCTTCTCTCCTCTTCCTTTGTATTCTTTTTAGGTCCAACCCCATGGCTTTCCTTTTGTACTCTCTAGGCCAAGAATGTTCTTTCTTCT----TCCTACCAT----TTAACCGTTATTCATTTCTCATGGCtgtattagtccgctttcacactg
s panTro4.chrUn_GL393505          296223 386 +   1195001 -------------------------TTTATTCTTTTC-AATCCATAATTAATTCCATAGATAGAATACTTTATAATGTAACTTTAACCATTACATCCTTTGATCAAAAATATACAGATATTCTTAATTTTTCTTCTC---ATATTTACTTAAATTATTTTTCATCGCTTTAATATTTCTTTATTCACTGGTCCCACAATAGTTCACTAAGTTTGGTATTTCTTGGTTTTGT---AAAAAATTTCCCAATTCAGTTCCTGAGCACA---ATT---AGT-ACTCTTCTCTCCTCTTCCTTTGTATTCTTTTTAGGTCCAACCCCATGGCTTTCCTTTTGTACTCTCTAGGCCAAGAATATTCTTTCTTCT----TCCTACCAT----TTAACCATTATTCATTTTTCATGGCtatattagtacattttcacactg
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5819896 386 +  72422247 -------------------------TTTATTCTTTTC-AATCCATAATTAATTCCATAGATAGAATAATTTATAATGTAACTTTAATCATTACATCCTTTGATCAAAAATATACAGATATTCTTAATTTTTCTTCTC---ACATATACTTACATTATTTTTCATCTTTTTAATATTTCTTTATTCACTGGTCCCACAATAGTTCACTAAGTTTGGTATTTCTTGGCTTTGT---AAAAAATTTCCCAGTTCAGCTGCTGAGCACA---ATG---AGT-ACTCTTCTCTCCTCTTCCTTTGTATTCTTTTTAGGTCCAACCCCATGGCTTTCCTTTTGTACTCTCTAGGCCAAGAATGTTCTTTCTTCT----TCTTACCAT----TTAAACATTATTCATTTTTCATGGCtgtattagtccgttttcacactg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53539859 386 + 121039945 -------------------------TTTATTCTTTTC-AATCCA----TAATTCCATAGATAGAATGATTTCTAATGTAACTTTAATCATTACATCCTTTGATGAAAAATATACAGATATTCTTAATTTTTCTTCTCATTATATTTACTTAAATTATTTTTCATCGCTTTAATATTTCTTTATTCACTGGTCCCACAATAGTTCACTAAGTTTGGTATTTCTTGGTTTTGT---AAAAAATTTCCCAATTCAGCTCCTAAGCACA---ATG---AGTAACTCTTCTCTCCTCTTCCTTTGTATTCTTCTTAGGTCCAACCCCATGGCTTTCCTTTTGTACTCTCTAGGCCAAGAATGTTCTTTCTTCT----TCCTGCCAT----TTAACCGTTATTCATTTTTTATGGCtgtattagtccgttttcacactg
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145879473 374 - 170124641 -------------------------TTTATTGTTTTC-AATCCA----TAATTCCATAGATAGAATAATTTATAATGCAACTTTAATCATTATATACTTTGATCAAAAATATACAGATACTCATAATTTTTCTTCTC---ATAT----TTAAATTATTTTTCATCGCTTTAATATTTCTTTATTCACTGGTCCTACAATAG----CTAAGTTTGGTAT---TTGTTTTTTTTTTTTAAAAATTCCCAGTTCAGCTCCTGAGCACA---ATA---AGC-ACTCTTCTCTCCTCTTCCTTTGTATTCTTCTTAGGTCCAACCCCATGGCTTTCCTTTTGTACTCTCTAGGCCAAGAATGTTCTTTCTTCT----TCCTGCCAT----TTAACCATTATTCATTTTTCATGGCtgtattagtccattttcacactg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147869842 377 - 171882078 -------------------------TTTATTGTTTTC-AATCCA----TAATTCCATAGATAGAATAATTTATAATGCAACTTTAATCATTATATACTTTGATCAAAAATATACAGATACTCATAATTTTTCTTCTC---ATAT----TTAAATTATTTTTCATCGCTTTAATATTTCTTTATTCACTGGTCCTACAATAG----CTAAGTTTGGTATTTCTTGTTTTTTTTTTTTAAAAATTCCCAGTTCAGCTCCTGAGCACA---ATA---AGC-ACTCTTCTCTCCTCTTCCTTTGTATTCTTCTTAGGTCCAACCCCATGGCTTTCCTTTTGTACTCTCTAGGCCAAGAATGTTCTTTCTTCT----TCCTGCCAT----TTAACCATTATTCATTTTTCATGGCtgtattagtccattttcacactg
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140796869 377 - 162156779 -------------------------tttattgttttc-aatCCA----TAATTCCAtagatagaataatttataatgcaACTTTAATCATTACATACTTTGATCAGAAATATACAGATACTcataatttttcttctc---atat----ttaaattatttttcatcgctttaatatttctttattcactgGTCCTACAATAG----CTAAGTTtggtatttcttgtttttttttaaaaaaaattcccagttCAGCTCCTGAGCACA---ATA---AGt-actcttctctcctcttcctttgtaTTCTTCTTAGGTCCAACCCCATGGCTTTCCTTTTGTACTCTCTAGGCCAagaatgttctttcttct----tcctgccaT----TTAACCATTATTCATTTTTCatggctgtattagtccattttcacactg
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36185351 379 +  58131712 -------------------------TTTATTGTTTTC-AATCTA----TAATTCCATAGATAGAATAATTTATAATGCAACTTTAATCATTATATCCTTTGATAAAAAATATACAGATACACATAATTTTTCTTCTC---ATAC----TTAAATTATTTTTCATCCCTTTAATATTTCTTTATTCACTGGTCCCAAAATAG----CTAAGTTTGGTATTTCTTG-TTTTTTTTAAAAAAAATTCCCAATTCAGCTCCTGAGCACA---ATAAGTAGT-ACTCTTCTCTCCTCTTCCTTTGTATTCTTCTTAGGTCCAACCCCATGACTTTCCTTTTGTACTCTCTAGGCCAAGAATGTTCTTTCTTAT----TCCTGCTAT----TTAACCATTATTCATTCTTCATGGCtgtattagtccattttcacactg
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26803841 406 -  40214260 TGTACTCCCCCCCCCTTTTTTTTGATGTACCCCTTTCAAATCCATCATTGATTC--TGGGCAGAATATTTTATAATGTGACTTTAATCATTGCATCTTTTTATCAGGAATCTATA---ATTCTCAATTTTCTTTGTT---TTATA---TTAAGTTCTTCATTATTGGTTTAATCTTTCTCTATCCCCTGGTCCCACAATACTTAGCTAAATTTTTTTTTGATCATTGTTGTTT-----AAATTTCCAATTTTGCTCCAAAGCCCACTGATC---GGT-ATTTTTTCCTGTCCTTCCCATGCATTCTT-----ATCAAACCCCATGGCTTCTCTTTTGTGTTTTTCTTGCCAA-AATGTTCTTTCTTCTCATATCCTGCCATATTATTAGCCATCCTTC-TATTGACTGACTAAATTTACCTCTTTCCTCACCT
i canFam3.chr30                C 0 I 399
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=1308568.000000
s hg38.chr14_KI270725v1_random    155564 576 +    172810 tcataaaagactttcctgagactgggtaatttataaaggaaaaaaggtttaattgactcacagttctgcatgctggagaggcctcaggaaacttaccatgatagtgggaggagaagcagacacatcttctatggtggcaggcaagggagaaagtaagcatgtgaaggaggaactgtcaaacacttataaacccatcagatctcttgagaacttaactcattatcatgagaacagcatgggggaagctgctgtcatgatccaatcacctcccaccaggttccttcctttatatgtggggattacaattcaagacgagatttgggtggggacacagagccaaaccatatcaATGGCCAAAATAATATATATTTTTCTTTTCTCATCTATTCCTGACTATGTCCTTTCTGAATTTCTTCCATACTTTCAACCTGACCCACAAAAGGCAGAGCTTACTAATATTTCTTATCCTGTTATTTAAAAATTAATTTTGCttgagtttgagaataatagtcaataggcaggggacaagcaggccatcaacagcatcctttattttggcagaaattattctgaatc
s panTro4.chrUn_GL393505          296609 576 +   1195001 tcataaaagacttttctgagactaggtaatttataaaggaaaaaaggtttaattgactcaccgttctgcatgctggagaggcctcaggaaacttaccatgatggtgggaggagaagcagacacatcttttatggtggaaggcaagggagaaagtaagcatgtgaaggaagagctgtcaaacacttaaaaacccatcagatgtcttgagaacttaactcattatcatgagaacagcatgggggaagctgctcccatgatccaatcacctcccacgaggttccttcctttatatgtggggattacaattcaagatgagagttgggtggggacacagagccaaaccatatcaATGGCCAAAATAATATATATTTTTCTTTTCTCATCTATTCCTGACTGTGTCCTTTCTGAATTTCTTCCATATTTTCAACCTTCCCCACAAAAGGCAGAGCTTACTCATGTTTCTTATCCTGTTATTCAAAAATTAATTTTGCTTGAGTTTGAGAATAATAGTCAATAGGCAGGGGACAAGCAGGCCATCAACAGCATCCTTTATTTTGGCAGAAATTATTCTGAATC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5820282 576 +  72422247 tgataaaagactttcctgagactgggtaattgataaaggaaaaaagttgtaattgactcacagttctgcatgctggagaggcctcaggaaacttaccatgatggtgggaggagaagctgacatgtcttctatggtggcaggcaagggagaaagtaagcatgtgaaggaggaaccgtcaaacacttatgaacccatcagatctcttgagaacttaactcattatcatgagaacagcataggggaagctgctcccatgatccaatcacctcccaccaggttccttcctttacttgtggggattacaattccagatgagatttgggtggggacacagagccaaaccatatcaATGGCCAAAATAATATATATTTTTCTTTTCTCATCTATTCCTGACTATGTCCTTTCTGAATTTCTTCCATACTTTCAACCTGTCACAGAAAAGGCAGAGCTTACTCATATTTCTTATCCTGTTATTTAAAAATTAATTTTGCCTGAGTTTGAGAATAATAGTCAATAGGCAGGGGATGAGCAGGCCATCAACAGCATCCTTTATTTTGGCAGCAATTATTCTAAACC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53540245 538 + 121039945 ccataaaagactttcctgagactgggtaatttataaagg-aaaaagctttaattgactcacagttctgcatgctggagaggcctcaggaaacttacaatgatggtgggaggggaagcagacatgtcctatatggcgac-ggcaagggagaaagtaagcacgtgaaggagga-----------------------------------agaactt-actcattatcatgagaacagcatggtggaagctgctcccatgattcaatcacctgccaccaggttccttcctttacatgtggggattacaattcgagatgagatttgggtggagacacagagccaaaccatatcaATGGCCAAAGGAATATATATTTTTCTTTTCTCATCTTTTCCTGACTATGTCCTTTCTGAATTTCTTCAGTACTTTCAACCTGTCCCACAAAAGGCATAGCTTATCCATATTTCTTACCCTGTTATTTAAAAATTAATTTTCTTTTAGTTTGAGAATAACAGCCAATAGGCAGGGGATGAGCAGGCCATCAACAGCATCCTTTATTGTGGCAGAAATTATTCTGAATC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145879847 573 - 170124641 tcataaaagaatttcctgagactgggtaatttataaagg-aaaaaggtttaattgactcacagttctgcatgctggagaggcctcaggaaacttacaatgatggtgggaggggaagcagacatgtcttctatggtggcaggcaagggagaaagtaagcatgtgaaggaggaactgtcaaacacttataaaaccatcagatctcttgagaactt-actcattatcatgagaacagcgtgggggaagctgctcccatgatccaatcacctcccaccagtctccttcctttacatgtggggattacaatttgaggtgagatttgggtggggacacagagccaaaccatatcaATGGCCAAAATAATGTATGGTTTTCTTTTCTCATCTATTTCTGATTATGTCC-TTCTGAATTTCTTCAGTACTTCCAAACTGTCCCACAAAAGGCAGAGCTTATTCATATTTCTTAACCTGTTATTTAAAAATTAATTTTGCTTTAGTTTGAGAATAATAGTCAATAGGCAGGGGATGAGCAGGCCATCAACAGCATCCTTTATCTTGGCAGAAATTATTCTGTGTC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147870219 573 - 171882078 tcataaaagaatttcctgagactgggtaatttataaagg-aaaaaggtttaattgactcacagttctgcatgctggagaggcctcaggaaacttacaatgatggtgggaggggaagcagacatgtcttctatggcggcaggcaagggagaaagtaagcatgtgaaggaggaactgtcaaacacttataaaaccatcagatctcttgagaactt-actcattatcatgagaacagcgtgggggaagctgctcccatgatccaatcacctcccaccagtctccttcctttacatgtggggattacaatttgaggtgagatttgggtggggacacagagccaaaccatatcaATGGCCAAAATAATGTATGTTTTTCTTTTCTCATCTATTTCTGATTATGTCC-TTCTGAATTTCTTCAGTACTTCCAAACTGTCCCACAAAAGGCAGAGCTTATTCATATTTCTTAACCTGTTATTTAAAAATTAATTTTGCTTTAGTTTGAgaataatagtcaataggcaggggatgagcaggccatcaacagcatcctttatcttggcagaaattattctgtgtc
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140797246 569 - 162156779 tcaTAAAAGAatttcctgagactgggtaatttataaagg-aaaaacgtttaattgactcacagttctgcatgctggagacgcctcaggaaacttacaatgatggtgGGAGGGGAAGCAGACATGTCTTCTATGGCGGCAGGCAAGGGAGAAAGTAagcatgtgaaggaggaactgtcaaacacttataaaaccatcagatctcttgagaactt-actcattatcatgagaacagcatgggggaagctgctcccatgatccaatcacctcccaccagtctcCTTCCTttacatgtggggattacaatttgaggtgagatttgggtggggacacagagccaaaccatatcaatggccaaaataatgtatgtttttct----tcatctatttctGATTATGTCC-TTCTGAATTTCTTCAGTACTTCCAAACTGTCCCACAAAAGGCAGAGCTTATTCATATTTCTTAacctgttatttaaaaattaattttgctttagTTTGAGAATAATAGTCAATAGGCAGGGGATGAGCAGGCCATCAACAGCATCCTTTATCTTGGCAGAAATTATTCTGTGTC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36185730 573 +  58131712 tcataaaagaatttcctgagactgggtaatttataaagg-aaaaaggtttaattgactcacagttctgcatgctggagaggcctcaggaaacttacaatgatggtgggaggggaagcagacatgtcttctatggcggcaggcaagggagaaagtaagcatgtgaaggaggaactgtcaaacactcataaaaccatcagatctcttgagaactt-actcattatcatgagaacagcatgggggaagctgctcccatgatccaatcaccttccaccaggctccttcctttacatgtggggattacaatttgaggtgagatttgggtagggacacagacccaaaccatatcaACGGCCAAAATAATCTATGTTTTTCTTTTCTCATCTATTTCTGACTATGTCC-TTCTGAACTTCTTCAGTACTTCCAAACTGTCCCACAAAAGGCAGAGCTTATTCATATTTCTTATCCTGTTATTTAAAAATTAATTTTGCTTTAGTTTGAGAATAATAGCCaataggcaggggatgagcaggccatcaacagcatcctttattttggcagaaattattctgtgtc
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26804247 399 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=690855.000000
s hg38.chr14_KI270725v1_random    156140 257 +    172810 aaacttacct--tgtcatgggtataattacatgatctcaaaaagaattaaaaatctctatcacttgaaccacagtttcccttagcatatttaataTACTTCATTTTTGTCAGCTAACAAATGTTAGCTAATAT-------TTTTACCATCAAGAAGAATATCCTTTGGCAAAAGTATCTCTGTTTGCTTAGTACATATTGAGAGAGTTGGACCCCATGGCCTCCCAACTTGCTCAGGAAT--GGAGAAGCTAGGGTATCCAGATAGGT
s panTro4.chrUn_GL393505          297185 257 +   1195001 AAACATACCT--TGTCATGGGTATAATTACATGATCTCAAAAAGAATTAAAAATCTCTATCACTTGAACCACAGTTTCCCTTAGCATATTTAATATACTTCATTTTTGTCAGCTAACAAATGTTAGCTAATAT-------TTTTACCATCAAGAAGAATATCCTTTGGCAAAAGTATCTCTGTTTCATTTGTACATATTGAGAGAGTTGGACCCTATGGCTTCCCAACTTGCTCAGAAAT--GGGGAAGCTAGGGTACCCAGATAGGT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5820858 257 +  72422247 AAACTTACCT--TGTCATGGGTATAATTACGTGATCTCAAAAAGAATTAAAAATCTCTATCACTTGAACCACAGTTTCCCTTAGCATATTTAATATACTTCATTTTTGTCAGCTAACACATGTTAGCTAATAT-------TTTTACCATCAAGAAGAATATCCTTTGGGAAAAGTATCTCTGTTTCATTAGTACATATTGAGAGAGTTGGACCCTATGGCTTCCCAACTTGCTCAGGAAT--GGGGAAGCTAGGGTACCCAGATAGGT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53540783 259 + 121039945 AAACTTACCTTATATCATGGGTATAATTATATGATCTCAAAAAGAATTAAAAATCTCTATCACTTGAACCACAATTTCCCTTAGCATATTTAATATACTTCATTTTTGTCAGCTAACAAATGTTAGCTAATAT-------TTTTACCATCAAGAAGAATATCCTTTGACAAAAGTATCTCTGTTTCATTAGTACATATAGAGAGAGTTGGACCCTATGGCTTCCCAGCTTGCTCAGAAAT--GGGGAAGCTAGGGTACCCAGATAGGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145880420 255 - 170124641 AAACTTACCTTGTATCATGGGTATAATTACATGGTCTCAAAAAGAATTACAAATCTCTATCACTTGAACCACAATTTCCCTTAGCATATTTAATATACTTCATTTTTGTCAGCTAACAAATGTTAGCTAATAT-------TTTTACCATCAAGAAGAATATCCTTTGGCAAAAGTATCTCTGTTTCATTAGTGCATAC----AGAGTTGGACCCTATGGCTTCCCAGCTTGCTCAGGAAT--GGGGAAGCTAGGGTACCCAGATAGGT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147870792 255 - 171882078 aaacttaccttgtatcatgggtataattacatggtctcaaaaagaattacaaatctctatcacttgaaccacaatttcccttagcatatttaataTACTTCATTTTTGTCAGCTAACAAATGTTAGCTAATAT-------ATTTACCATCAAGAAGAATATCCTTTGGCAAAAGTATCTCTGTTTCATTAGTGCATAC----AGAGTTGGACCCTATGGCTTCCCAGCTTGCTCAGGAAT--GGGGAAGCTAGGGTACCCAGATAGGT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140797815 255 - 162156779 AAACTTACCTTGTATCATGGGTATAATTACATGGTCTCAAAAAGAATTACAAATCTCTATCACTTGAACCACAATTTCCCTTAGCATATTTAACATACTTCATTTTTGTCAGCTAACAAATGTTAGCTAATAT-------TTTTACCATCAAGAAGAATATCCTTTGGCAAAAGTATCTCTGTTTCATTAGTGCATAT----AGAGTTGGACCCTATGGCTTCCCAGCTTGCTCAGGAAT--GGGGAAGCTAGGGTACCCAGATAGGT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36186303 258 +  58131712 aaacttaccttgtatcatgggtataattacatggtctcaaaaagaattacaaatctctattacttgaacaacaatttctcttagcatatttaataTACTTCATTTTTGTCAGCTAACAAATGTTAGCTAATAT-------TTTTACCATCAAGAAGAATATCCTTTGGCAAGAGTATCTCTGTTTCATGAGTGCATATAGAGAGAGTTGGACCCTATGGCTTCCCAGCTTGCTCAGGAAT---GGGAAGCTAGGGTACCCAGATAGGT
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26804646 258 -  40214260 aAACTTACCTTGTATTACTACTCTAAGTACATTATCTCAAAAAGGACTG-AAATTTCCATCA-TTGATTCACAGTTTTTCTTTGCATATTTACTGTACTTTTTTCTTTT---TTAAC--ATAATATTTAATATCATAATATTTCAATATCATGAA-AATGTCCTTTGGCAAAAATATTTCCATTTCACTCATATATAT--AGAAGTTTGGACCTGGTGACTTCATAGCTTGCTCAGGAAGTAGGGGAAGTTAGGGCACCCAGGTGGGT
i canFam3.chr30                I 399 I 4140
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=780516.000000
s hg38.chr14_KI270725v1_random    156397 340 +    172810 AATCTTCTGTTATGATACTTATATGCTGACTGTACACGGTGTCAAAT----CTGGGTC----------TTGACCTAGCAGGCACACATTAACACAACATGAAGGAAGTAAAAAGTCATTTATGAAACTACAATGGCTGCAGTAGTTATTTGGTAGTCCTC-TTTTAAAAATTTCCTTTTAATTGAAATGAAAGTTTATAAGTGATCATACTGTAAATGATATGACATTTTATAATGTTTTATTACAAAAACTCAAACACTCCAGGAGTGAATTAAATGTAAATTGAAATCTTCCTCTCTCTACAATTCCACTTGCCTCATCATTTCCTCTATTCCTTAGAAATCCAC---CGACAATT
s panTro4.chrUn_GL393505          297442 344 +   1195001 AATCTTCTGTTTTGATACTTATATCCTGACTGTACACAGTGTCAAAT----CTGGGTC----------TTGACCTAGCAGGCACACATTAACACAACATGAAGGAAGGAAAAAGTCATTTATGAAACTACAATGGCTGCAGTAGTCATTTGGTAGTCCTCTTTTTAAAAATTTCCTTTTAATTGAAATGAAAGTTTATAAGTGATCATACTGTAAATGATATAACATTTTATAATGTTTTATTACAAAAACTCAAACACTCCAGGAGTGAATTAAATGTAAGTTGAAATCTCCCTCTCTCTACAATCCCACTTGCCTCATCATTTCCTCTATTCCTTAGAAATCCACTGACAACAATT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5821115 344 +  72422247 AATCTTCTGTTTTGATACTTATATCCTGACTGTACATAGTGTCAAAT----CTGGGTC----------TTGACCTAGCAGGCACACATTAACACAACATGAATTAAGGAAAAAGTCATTTATGAAACTACAATTGCTGCAGTAGTTATTTGGTAGTCCTCTTTTTAAAAATTTCCTTTTAATTGAAATGAAAGTTTATAAGTGATCATACTGTAAATGATATAACATTTTATAATGTTTTATTACAAAAACTCAAACACTCCAGGAGTGAATTAAATGTAAATTGAAATCTCCCTCTCTCTACAATCCCACTTGCCTCATCATTTCCTCAATTCTTTAGAAATCCACCAAAAACAATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53541042 357 + 121039945 AATCTTCTGTTTTGATACTTATATCCTGACTGTACACAGTGTCAAATTATATTTGATCTACATTATATTTGACCTAGTAGGCACCCATTAACACAACATGAAGGAA-CAAAAAGTCATTTATGAAACTATGATGGCTGCAGTAGTTATTTGGTAGTCCTCTCTTTAAAATTTTCCTTTTAATTGAAATGAAAGTTTATAAGTGATCATACTGTAAATGATATAACATTTTATAATGTTTTATTACAAAAACTCAAACACTCCAGGAGTGAATTAAATGTAAATTGAAATCTCCCTCTCTCTACAATCCCACTTGCCTCACCATTTCCTCTGTTCCTTAGAAATCCACCATCAAAAATT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145880675 339 - 170124641 AATCTCCTGTTTTGATACTTATATCCTGACTGTACCCAGTGTTAAAT----CTGGGTC----------TTGACCTAGTGGGCACCCATTGACACAACATGAAGGAAGGAAAAAGTCATTTATGAAACTATGATAGCTGCAGTAGTCATTTGGTAGTTCTCTTTTTAAAAATTTCCTTTTAAT-----TGAAAGTTTATAAGTGATCGTACTGTAAATGATATAACATTTTATAATGTTTTATTACAAAAACTCAAACACTCTGGGAGTGGATTAAATGTAAATTGGAATCTCCCTCTCTCTACAATCCCACTTGCCTCACCAATTCCTCTATTCCTTAGAAATCCACCAACAAAAATT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147871047 339 - 171882078 AATCTCCTGTTTTGATACTTATATCCTGACTGTACCCAGTGTTAAAT----CTGGGTC----------TTGACCTAGTGGGCACCCATTGACACAACATGAAGGAAGGAAAAAGTCATTTATGAAACTATGATAGCTGCAGTAGTCGTTTGGTAGTTCTCTTTTTAAAAATTTCCTTTTAAT-----TGAAAGTTTATAAGTGATCATACTGTAAATGATATAACATTTTATAATGTTTTATTACAAAAACTCAAACACTCTGGGAGTGGATTAAATGTAAATTGGAATCTCCCTCTCTCTACAATCCCACTTGCCTCACCAATTCCTCTATTCCTTAGAAATCCACCAACAAAAATT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140798070 339 - 162156779 AATCTCCTGTTTTGATACTTATATCCTGACTGTACCCAGTGTTAAAT----CTGGGTC----------TTGACCTAGTGGGCACCCATTAACACaacatgaaggaaggaaaaagtcaTTTATGAAACTATGATAGCTGCAGTAGTCATTtggtagttctctttttaaaaatttccttttaat-----tgaAAGTTTATAAGTGATCATACTGTAAAtgatataacattttataatgttttattacaAAAACTCAAACACTCTGGGAGTGGATTAAATGTAAATTGGAATCTCCCTCTCTCTACAATCCCACTTGCCTCACCAATTCCTCTATTCCTTAGAAATCCACCaacaaaaatt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36186561 339 +  58131712 AATCTCCTGTTTTGATACTTATATCCTGACTGTACCCAGTGTCAAAT----CTGGGTC----------TTGACCTAGTGGGCACCCATTAACACAACATGAAGGAAGGAAAAAGTCATTTATGAAACTATGATAGCTGTAGTAGTCATTTGATAGTTCTCTTTTTAAAAATTTCCTTTTAAT-----TGAAAGTTTTTAAGTGATCATAGTCTAAATTATATAACATTTTATAATGTTTTATTAGAAAAACTCAAACAGTCTGGGAGTGAATTAAATGTAAATTGGAATCTCCCTCTCTCTACAATCCCACTTGCCTCACCAATTCCTCTATTCCTTAGAAATCCACCAACAAAAATT
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36212504 2360 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=-1132.000000
s hg38.chr14_KI270725v1_random    156737 1 +    172810 -T
s panTro4.chrUn_GL393505          297786 1 +   1195001 -T
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5821459 1 +  72422247 -T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53541399 1 + 121039945 -T
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881014 1 - 170124641 -T
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147871386 1 - 171882078 -T
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140798409 1 - 162156779 -t
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36186900 1 +  58131712 -T
i chlSab2.chr26                C 0 C 0
s otoGar3.GL873530              36214864 1 -  36342412 G-
i otoGar3.GL873530             I 2360 I 3272
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=2548.000000
s hg38.chr14_KI270725v1_random    156738 1 +    172810 A
s panTro4.chrUn_GL393505          297787 1 +   1195001 A
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5821460 1 +  72422247 A
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53541400 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881015 1 - 170124641 A
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147871387 1 - 171882078 A
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140798410 1 - 162156779 a
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36186901 1 +  58131712 A
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               90696 7249 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=2300.000000
s hg38.chr14_KI270725v1_random    156739 1 +    172810 A
s panTro4.chrUn_GL393505          297788 1 +   1195001 A
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5821461 1 +  72422247 A
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53541401 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881016 1 - 170124641 A
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147871388 1 - 171882078 A
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140798411 1 - 162156779 a
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36186902 1 +  58131712 A
i chlSab2.chr26                C 0 C 0
s tarSyr2.KE933570v1               97945 1 +    145891 G
i tarSyr2.KE933570v1           I 7249 I 7045
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=1103889.000000
s hg38.chr14_KI270725v1_random    156740 479 +    172810 TTAGAACTCAAATACTCTCACTCATAAAACACATATGTGTA--CTTTTTTAAAAATGAGATTATGCTAATTATGATTTGTAGTGAACTGATATTTCATTTGAAAATACATTGGATATCTTGCCGTCATTTAAAATGACTGTAAAATGTTAATTTTTACCAGTA-TTTTTATAAAACATATCTATTGAAAATTCAAGTCATTACCATCTTTGCA-TTTTTT--TAAACTTGTATAATGAACAGCTTTGCAAATATTAGTTAGCACACTGCTTCAATTATTTAATAGAGATCTAATCTGAGGAGTTCAGAATTTTCAACTCTTTCTCAGGACCATTCCTTTGGAGTGATTCTGGAAATGTAGGTTATTTTTGGTTGTATCAATGATGGAGACATGGCAAGCACTTA-CAAGTAAAGGGTAGAGATCACATGCAGCATGCATTGGGCCAAACAGTGCATTGAGACAAACAGTCCTATATAAGGAAGAAT
s panTro4.chrUn_GL393505          297789 473 +   1195001 TTAGAACTCAAATACTCTCACTCATAAAATGCATATGTGTA--TTTTTTTAAAAATGGGATTATGCTAATTATGATTTGTAGTGACCTGATATTTCATTCGAAAATACATTGGATATCTTGCCGTCATTTAAATTGACTGTAAAATGTTAATTTTTACCAGTATTTTTTATAAAACATATCCATTGAAAATTTAAGTCATTACCATCTTTGCA-TTTTTC-ATAAACTTGTATAATGAACAGCTTTGCAAATATTAGTTAGCACACTTGTTCAATTATTTAA--------TAATCTGAGGAGTTGAGAATTTTCAACTCTTTCTCAGGACCATTCCTTTGGAGTGATTTTGGAAATGTAGGTTATTTTTGGTTGTATCAATGATGGAGACATGACAAGCACTTA-CAAGTAAAGTGTAGAGATCACATGCAGCATGCATTGGGCCAAACAGTGCATTGAGACAAACAGTCCTATACAAGGAAGAAT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5821462 479 +  72422247 TTAGAACTCAAATACTCTCACTCATAAAACGCATATGTGTA--CTTTTTAAAAAATGGGATTATGCTAATTATGATTTGTAGTGACCTGATATTTCATTCAAAAATACATTGGATATCTTGCCATCATTTAAAATGACTGTAAAATGTTAA-TTTTACCAGTA-TTTTTATAAAACATATCTATTGAAAATTTAAGTCATTACCATCTTTGCA-TTTTTT-ATAAACTTGTATAATGAACAGCTTTGCAAATATTAGTTAGCACATTTGTTCAATTATTTAATAGAGATCTAATCCGAGGAGTTGAGAATTTTCAACTCTTTCTCAGGACCATTCCTTTGGAGTGATTTTGGAAATGTAGGTTATTTTTGGTTGTATCAATGATGGAGACATGACAAGCACTTA-CAAATAGAGAGTACAGATCACATGCAGCATGCATTGGGCCAAACAGTGCATTGAGACAAACAGTCCTATATAAGGAAGAAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53541402 483 + 121039945 TTAGAACTCAAATACTTTCACTCATAAAAGGTATATGTGTA-CCTTTTTAAAAAACTGGATTATGCTAATTATGATTTGTAGTTACCTGATATTTCATTCAAAAATACATTGGACATGTTGCCATCATTTAAAATGACTGTAAAATGTTAATTCTTACCATTA-TTTTTATAAAATGTATCTATTGAAAATTTAAGACATTACCATCTTTGCAGTTTTTT-ATAAACTTGTATAATGAACAGCTTTACAAATATTAGTTAGCGCACTTGTTCAATTACTTAATAGAGATCTAATCTGAGGAGTTGAGAATTTTTGACGCTTTCTcaggaccattcctttggagtgattttggaaatgtaggttatttttggctgtaacaatgatggggacatgacaagcacttaccaagtagagggtagagatcacatgcagcatgcattgggtcaaacagtgcattgagacaaacagtcctacataaggaagaat
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881017 482 - 170124641 TTAGAACT--AATACTTTCACTCATAAAAGGCGTATGTGTACCTTTTTTTAAAAACGAGATTAGGCTAATTATGATTTGTAATGACCTGACATTTCATTCAAAAATACATTGGACATCTTGCCATCATTTAAAATGACTGTAAAATGTTAATTTTTACCAGCA-TTTTTATAAAACATATCTATTGAAAATTTAAGACATTACCATCTTTGCA-TTTTTTAATAAATTTGTATAGTGAACAGCTTTGCAAATATTAGTTAGCATACTTGTTCAATTATTTAATAGAGATCCACTCTGAGGAGTTGAGAATTTTCAAGTCTTTCTcaggaccattcctttgaagtgattttggaaatgtaggttatttttggttgtatcaatgatggagacatgacaagcacttaccaagtagagggtagagatcacatgcagcatgcattgggccaaacagtgcattgagccaaacagtcctatataaggaagaat
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147871389 482 - 171882078 TTAGAACT--AATACTTTCACTCATAAAAGGCGTATGTGTACCTTTTTTTAAAAACGAGATTAGGCTAATTATGATTTGTAATGACCTGACATTTCATTCAAAAATACATTGGACATCTTGCCATCATTTAAAATGACTGTAAAATGTTAATTTTTACCAGCA-TTTTTATAAAACATATCTATTGAAAATTTAAGACATTACCATCTTTGCA-TTTTTTAATAAATTTGTATAGTGAACAGCTTTGCAAATATTAGTTAGCATACTTGTTCAATTATTTAATAGAGATCCACTCTGAGGAGTTGAGAATTTTCAAGTCTTTCTCAGGACCATTCCTTTGAAGTGATTTTGGAAATGTAGGTTATTTTTGGTTGTATCAATGATGGAGACATGACAAGCACTTACCAAGTAGAGGGTAGAGATCACATGCAGCATGCATTGGGCCAAACAGTGCATTGAGCCAAACAGTCCTATATAAGGAAGAAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140798412 482 - 162156779 ttagaaCT--AATACTTTCACTCATAAAAGGCGTATGtgtacctttttttaaaaatgagattaggCTAATTATGATTTGTAATGACCTGACATTTCATTCAAAAATACATTGGACATCTTGCCATCATTTAAAATGActgtaaaatgttaatttttaccagta-tttttataaaacatatctATTGAAAATTTAAGACATTAccatctttgca-ttttttaataaatttgtataGTGAACAGCTTTGCAAATATTAGTTAGCATACTTGTTCAATTATTTAATAGAGATCCACTCTGAGGAGTTGAGAATTTTCAACTCTTTCTCAGGACCATTCCTTTGAAGTGATTTTGGAAATATAGGTTATTTTTGGTTGTATCAATGATGGAGACATGACAAGCCCTTACCAAGTAGAGGGTAGAGATCACATGCAGCATGCATTGGGCCAAACAGGGCATTGAGCCAAACAGTCCTATATAAGGAAGAAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36186903 484 +  58131712 TTAGAACTCAAATACTTTCACTCATAAAAGGCATATGTGTACCTTTTTTAAAAAATGAGATTAGGCTAATTATGATTTGTAGTGACCTGACATTTCATTCAAAAATACATTGCACATCTTGCCATCATTTAAAATGACTGTAAAATGTTCATTTTTACCAGTA-TTTTTATAAAACATATCTATTGAAAATTTAAGACATTACCATCTTTGCA-TTTTTTTATAAACTTGTATAGTGAACAGCTTTGCAAATATTAGTTAGCATACTTGTTCAATTATTTAATAGAGATCCACTCTGAGGAGTTGAGAATTTTCAACTCTTTCTCAGGACTATTCCTTTGAAGTGATTTTGGAAATGTAGGTTATTTTTGGTTGTATCAATGATGGAGACATGACAAGCACTTACCAAGTAGAGGGTACAGATCACATGCAGCATGCATTGGGCCAGACAGTGCATTGAGCCAAACAGTCCTATATAAGGAAGAAT
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58110999 2593 - 182113224 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=358189.000000
s hg38.chr14_KI270725v1_random    157219 137 +    172810 TGCTTCTTATG-----AAGGCCCAATAGTACCTCTTGGAGAAACATGGCAACATGAAGTATTTCACGGTCTACTTTAAG---AAATGTTGCACTATTTGTGCATTTTACAATAAATATCTATTGATCTTATAATCTGCAAAATTA---
s panTro4.chrUn_GL393505          298262 134 +   1195001 TGCTTCATATG-----AAGGCCCAATAGTACCTCTTGGAGAAACATGGCAACATGAAGTATTTCACTGTCTACTTTAAG---AAATGTTGCACTATTTGTGCATTTTACAATAAATATCTGTTGGTCTTATAATCTGCAAA---A---
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5821941 134 +  72422247 TGCTTTGTATG-----AAGGCCCAATAGTACCTCTTGGAGAAACATGGCATCATGAAGTATTTCACTGTCTACTTTAAG---AAATGTTGCACTATTTGTGCATTTTACAATAAATATCTATTGATCTTATAATCTACAAT---A---
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53541885 134 + 121039945 tgCTTAGTATG-----AAGGCCCAATAGTACCTCTTGGAGAAACATGGCAGCATGAAGTATTTCACTGTCTACTTTAAG---AAAGGTTGCACTATTTGTGCATTTTACAATAAATATCTATTGATCTTATAATCTGCAAA---A---
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881499 134 - 170124641 tgCTTAGTATC-----AAGGCCCAATAGTACCTCTTGGAGAAACATGGCAACATGAAGTACTTCACTGTCTACTTTAAG---AAATGTTGCACTATTTGTGCATTTTACAATAAATATCTATTGATCTTATAATCTGCAAA---A---
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147871871 134 - 171882078 TGCTTAGTATC-----AAGGCCCAATAGTACCTCTTGGAGAAACATGGCAACATGAAGTACTTCACTGTCTACTTTAAG---AAATGTTGCACTATTTGTGCATTTTACAATAAATATCTATTGATCTTATAATCTGCAAA---A---
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140798894 134 - 162156779 TGCTTAGTATG-----AAGGCCCAATAGTACCTCTTGGAGAAACATGGCAACATGAAGTACTTCACTGTCTACTTTAAG---AAATGTTGCACTGTTTGTGCATTTTACAATAAATATCTATGGATCTTATAATCTGCAAA---A---
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36187387 134 +  58131712 TGCTTAGTATG-----AAGGCCCAATAGTACCTCTTGGAGAAAGATGGCGACATGAAGTACTTCACTGTCTACTTTAAG---AAATGTTGCACTATTTGTGCATTTTACAATAAATATCTATTGATCTTATAATCTGCAAA---A---
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58113592 145 - 182113224 tgcctcttatAGATTTAAAGCCTAGCTGTAGCTCTTAGAAAAGTGTGGTGGCCTTAAGGATTTCACTATCTACCTTAAGAAAAAAAAAAGCACTACCTGTATATTTTGCAATAAACATCTGACACATTCACCATTTGCAAA---ATAA
i mm10.chr2                    I 2593 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=408605.000000
s hg38.chr14_KI270725v1_random    157356 223 +    172810 TAATATACTATTATTT--AAAGTTCTTTTTTGTTTTGTtttgtttttgtttctttgtttgt-------tttttttgagacagagtgttgctctgtcacccaggctggagtgcagtgacacaatcttggctcaatacaacctccatctcccgggtttgagtgatttcttgtgcctcagtttcacaagtagctgagactacaggcacatgccaccatgccctgctaatttttgt
s panTro4.chrUn_GL393505          298396 213 +   1195001 CGATATACTATTATTT--AAAGTTCTT-----Ttttgttttttttttgtttgtttgtttg------------tttgagacagagtcttgctctgtcacccaggctggagtgcagtggcacaatcttggctcaatacaacctccacctcccgggtttgagtgatttcttgtgcttcagttttgcaagtagctgagactacaggcacatgccaccatgcccgactaatttttgt
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5822075 230 +  72422247 CAATATACTATTATTT--AAAGttctcttttgttttgttttgtttttgtttgtttgtttgtttgtttgtttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcagaatcttggctcaatccaacctccacctcctgggtttgagtgatttcttgtgcctcagtttcacaagtagctgagactacaggcacgtgccaccattcccggctaatttttgt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542019 194 + 121039945 CAATATACTATTATTT--AAAGAtttt-----ttttttttt-------------------------------tttgagacagagtcttgctctatcacccaggctggagtgcagtggtacaatcttggctcactacaacctccgcctcccgggtttgagtgatttcttgtgcctcagtttcccaagtagctgagactacaggcacgtaccaccatgcctggctaatttttgt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881633 189 - 170124641 CAATATACTGTTATTT--AAAtttttt-----tttt------------------------------------tttgagacagagtcttgctctgtcacccagactggagggcagtggcataatcttggctcactacaacctccgcctctcgggtttgagtgatttcttgtgcctcagtttcccaagtagctgagattacaggtgcgtaccaccacgcctggctaatttttgt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872005 190 - 171882078 CAATATACTGTTATTT-AAAAtttttt-----tttt------------------------------------ttttagacagagtcttgctctgtcacccagactggagggcagtggcataatcttggctcactacaacctccgcctctcgggtttgagtgatttcttgtgcctcagtttcccaagtagctgagattacaggtgcgtaccaccacgcctggctaatttttgt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799028 189 - 162156779 CAATATActattattt--aaagatttt-----tttt------------------------------------tttgagacagagtcttgctctgttacctaggttggagggcagtggcacaatcttggctcactacaacctccgcctcttgggtttgAGTgatttcttgtgcctcagtttcccaagtagctgagactacaggcgcataccaccatgcccggctaatttttgt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36187521 191 +  58131712 CAATATGCTATTATTTAAAGAtttttt-----tttt------------------------------------tttgagacagagtcttgctctgtcacccaggctggagggcagtggcacaatcttagctcactacaacctccgcctcttgggtttgagtgatttcttgtgcctcagtttcccaagtagctgagattacaggcacgtaccaccacgcctggctaatttttgt
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58793683 16611 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58113737   0 - 182113224 C
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=15954.000000
s hg38.chr14_KI270725v1_random    157579 8 +    172810 atttttgt
s panTro4.chrUn_GL393505          298609 8 +   1195001 atttttgt
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58810294 8 + 158137892 atttttga
i gorGor3.chr7                 I 16611 I 227
s ponAbe2.chrUn                  5822305 8 +  72422247 atttttgt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542213 2 + 121039945 at------
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881822 8 - 170124641 atttttgt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872195 8 - 171882078 atttttgt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799217 8 - 162156779 atttttgt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36187712 8 +  58131712 atttttgt
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58113737 0 - 182113224 C
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=319947.000000
s hg38.chr14_KI270725v1_random    157587 135 +    172810 gtttttagtagagaaggggtttcaccatatcggccaggctggccttgaacccctgtcctcaagtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccatgcctggccTATTATTCT
s panTro4.chrUn_GL393505          298617 135 +   1195001 gtttttagtagagaaggggtttcaccatattggccagggtggtcttgaacccctgtcctcaagtgatccacccacctcggccttccaaagttctgggattacaggtgtgagccaccatgcctggccTATTATTTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5822313 135 +  72422247 gtttttagtagagaaggggtttcaacatatcagccaggctggccttgaaccactgtcctcaagtgatccacccaccttggcctcccaaagtgcagggattacagatgtgagccaccatgcctggccTATTATTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542215 135 + 121039945 atttttagtagagaaggggtttcaccagatcggccaggctggccttgaacccctggcctcaagtgatctgcccacctcggcctcccaaagtgctggggttacaggtgtgagacaccatgcctggccTATTATTTA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881830 135 - 170124641 atttttagtagagaaggggtttcaccatattggccaggctggccttgaacccctggcctcaagtgatctgcccacctcggcctcccaaagtgctgggattacaggcataagccaccatgcctggccTATTATTTA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872203 135 - 171882078 atttttagtagagaaggggtttcaccatattggccaggctggccttgaacccctggcctcaagtgatctgcccacctcggcctcccaaagtgctgggattacaggcataagccaccatgcctggccTATTATTTA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799225 135 - 162156779 atttttagtagagaaggggtttcaccgtatcggccaggctggccctgaacccctggcctcaagtaatccgcccatctcggcctcccaaagtgctgggattacaggcatgagccaccatgcctggcctattattta
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36187720 135 +  58131712 atttttagtagagaaggggtttcaccatatcagccaggctggccttgaacccctggcctcaagtgatccgcccacctcggcctcccaaagtgctggcattacaggcatgagccaccatgcctggccTATTATTTA
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58810302 227 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58113737   0 - 182113224 C
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=233612.000000
s hg38.chr14_KI270725v1_random    157722 92 +    172810 AAGGATTTAATCTTCTCCCATCCCAACAGCAATGGAATTTTtcaataaatccaaaaaattatttctttgaaaggacaaacaaattagatgac
s panTro4.chrUn_GL393505          298752 92 +   1195001 AAGGATTTAATCTTCTCCCATCCCAACAGCAATGGAATTTTtcaataaatccaaaacattgtttctttgaaaagacaaataaattagatgac
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5822448 92 +  72422247 AAGGATTTAATCTTCTCCCATCCCAACAGCAATGGAATTTTTCAATAAATCCAAAAAATTGTTTCTTTGAAAAGACAAATAAATTAGATGAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542350 92 + 121039945 AAGGATTTAATCTTCTCCCATCCCAACAGCAATGGAATTTATCAATAAATCCAAAAAATTGTTTCTTTGAAAAGACAAATAAATTAGATGAC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145881965 88 - 170124641 AAGGATTTAATTTTCTCCCATCCCAACAGCaatgggatttttcaataaatccaaaaaattgtttctttgaaaagac----aaattagatgac
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872338 88 - 171882078 AAGGATTTAATTTTCTCCCATCCCAACAGCAATGggatttttcaataaatccaaaaaattgtttctttgaaaagac----aaattagatgac
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799360 92 - 162156779 aAGGATTTAATTTTCTCCCATCCCAACAGCAATGGAATTTTTCAATAAATccaaaaaattgtttctttgaaaagacaaataaattagatgac
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36187855 92 +  58131712 AAGGATTTACTTTTCTCCCATCCCAACCACAATGGAATTTTtcaataaatccaaaaaattgtttctttgaaaagacaaataaattagatgac
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58113737 78 - 182113224 AAGCATTTAACCACTTGCCATTCCAATACCAATAGAAAATTTCAATTAAT-TAAAGGAGGGTTTTTATAAA-------------TAGATTAC
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58810302 227 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=4095.000000
s hg38.chr14_KI270725v1_random    157814 1 +    172810 a
s panTro4.chrUn_GL393505          298844 1 +   1195001 a
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58810529 1 + 158137892 a
i gorGor3.chr7                 I 227 I 127
s ponAbe2.chrUn                  5822540 1 +  72422247 A
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542442 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145882053 1 - 170124641 a
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872426 1 - 171882078 a
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799452 1 - 162156779 a
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36187947 1 +  58131712 a
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58113815 1 - 182113224 A
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=309330.000000
s hg38.chr14_KI270725v1_random    157815 127 +    172810 aaaaagagagagcctattaaaatataacaagaaaaatggaaaactggataactgaaaa-tttcaaaagaatgtaatatgtaccttttggtcattatatttggaaatatatatgaagaggttaattttt---
s panTro4.chrUn_GL393505          298845 127 +   1195001 aaaaagagagagcctattaaaatataacaagaaaaatggaaaactggataattgaaaa-tttcaaaagaatgcaatatgtaccttttggtcattatatttgaaaatatatatgaagaggttaattttt---
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5822541 126 +  72422247 AAAAAGAGAGAGCCTGTTAAAATATAAGAAGAAAAATGGAAAACTGGATAATTGAAAA-TTTCAAAAGAATGCAATATGTATCTTTTGGTCA-TGTATTTGAAAATATATGTGAAGAGGTTAATTTTT---
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542443 128 + 121039945 AAAAAGCAGGAGCATATTAAAATATGACAAGAAAAATGGAAAACTGGATAATTGAAAACCTTCaaaagaatgcagtatgtaccttttggtcattatatttgaaaatatatatgaagaggttaattttt---
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145882054 128 - 170124641 aaaaagagagagcatattaaaatacaacaagaaaaatgaaaaactggataattgaaaattttcaaaagaatgcaatatgtacctttcggtcattatatttgaaaatatatatgaagaggttaattttt---
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872427 128 - 171882078 aaaaagagagagcatattaaaatacaacaagaaaaatgaaaaactggataattgaaaattttcaaaagaatgcaatatgtacctttcggtcattatatttgaaaatatatatgaagaggttaattttt---
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799453 128 - 162156779 aaaaagagagagcatattaaaatacaacaagaaaaatgaaaaactggataattgaaaattttcaaaagaatgcAATATATGCCTTTTGgtcattatatttgaaaatatatatgaagagGTTAATTTTT---
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36187948 128 +  58131712 aaaaagagagagcatattaaaatacaacaagaaaaatgaaaaactggataattgaaaattttcaaaagaatgcaatatgtaacttttggtcattatatttgaaaatatatatgaagaggttaatgttt---
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58113816 116 - 182113224 -AAAAGCTGGCATTTAT-----TGCAATAAGGTAAATACATACTTGGTTAATTTATAAATTTGTAAGGAATACCATCTGTA--TTTTGAACAATATATTTGAGAATCAATAT-------TTAGTTTTATTT
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58810530 127 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=7092.000000
s hg38.chr14_KI270725v1_random    157942 2 +    172810 ta
s panTro4.chrUn_GL393505          298972 2 +   1195001 ta
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58810657 2 + 158137892 ta
i gorGor3.chr7                 I 127 I 273
s ponAbe2.chrUn                  5822667 2 +  72422247 TA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542571 2 + 121039945 ta
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145882182 2 - 170124641 ta
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872555 2 - 171882078 ta
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799581 2 - 162156779 TA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36188076 2 +  58131712 ta
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58113932 2 - 182113224 TG
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=690743.000000
s hg38.chr14_KI270725v1_random    157944 272 +    172810 gggaaaatttaactataaaaataaatctagagaaatgagatcatttgaagataccaacaatagaaaaaaatgaaaccggtgtaaagttatagcacctttaaaagctcaaggcccagctgtgtctcaagcaggccctcttaaacttaatggaaaagttaattcctgcattcttcaaactattcttttggttaatgggagcaa---aggaagcatatctctccctcc-atttatttcttaaaacaactgaaaaccaaaagaaaaatcaatatacaaag
s panTro4.chrUn_GL393505          298974 272 +   1195001 gggaaaatttaactataaaaataaatctagagaaatgagaacaattgaagataacaacaatagaaaaaaatgaaaccgaagtaaagttatagcacctttaaaagctcaaggcccagctgtgtctcaagcaggtcctcttaaacttaatggaaaagttaattcctgtgttgttcaaactattcttttggttaataggagcaa---aggaagcatatctctccctcc-atttatttcttaaaacaactgaaaaccaaaagaaaaatcaatgtacaaag
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5822669 272 +  72422247 GGGAAAATTTAACTATAAAAATAAATCTAGATAAATGAGAACATTTGAAGATACCAACAATAGAAAAAAATGAAACTGGCATAAAGTTATAGCACCTTTAAAAGCTCAAGGCCCAGCTGTGTCTCAAGCAGGTCCTCTTCAACTTAATGGAAATGTTAATTCCTGTGTTGTTCAAACTATTCTTTTGGTTAATGGGAGCAA---AGGAAGCATATCTCTCCCTCC-ATTTATTTCTTAAAACAACTGAAAACCAAAAGAAAAATCAATGTGCAAAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542573 272 + 121039945 gggaaaatttaactataaaaataaatctagggaaatgagaacatttgaagataccaacagtagaaaaaaatgaaacaggtataaagttatagcacctttaaaagctcaaggcccagctgtgtctcaagcaggtcctcttaaacttaatggaaaagttaattcctgtgttgttcaaactattcttttggttaatgggagcaa---aggaagcatatctctccctct-gtttatttcttaaaacaactgaaaaccaaaagaaaaatcaatgtacaaag
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145882184 271 - 170124641 gggaaaatttaactataaaaataaatctaggaaaatgagaacatttgaagataccaacaatag-aaaaaatgtaacaggtataaagttgtagcacctttaaaagctcaaggcccagctgtgtctcaagcaggtcctcttaaacttaatggaaaagttaattcctgtgttgttcaaactattcttttggttaatgggagcaa---aggaagcatatctctccctct-atttatttcttaaaacaactgaaaaccaaaagaaaaatcaatgtacaaag
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872557 271 - 171882078 gggaaaatttaactataaaaataaatctaggaaaatgagaacatttgaagataccaacaatag-aaaaaatgtaacaggtataaagttgtagcacctttaaaagctcaaggcccagctgtgtctcaagcaggtcctcttaaacttaatggaaaagttaattcctgtgttgttcaaactattcttttggttaatgggagcaa---aggaagcatatctctccctct-atttatttcttaaaacaactgaaaaccaaaagaaaaatcaatgtacaaag
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799583 272 - 162156779 GGGAAaatttaactataaaaataaatctaggaAAATGAGAACAGTTGAAGATaccaacaatagaaaaaaatgtaacaggTATAAAGTTGTAGCACCTTTAAAAGCTCAAGGCCCAGTAGTGTCTCAAGCAGATCCTCTTAAACTTAATGGAAAAGTTAATTCCTGTGTTGTTCAAACTATTCTTTTGGTTAATGGGAGCAA---AGGAAGCATATCTCTCCctcc-atttatttcttaaaacaactgaaaaccaaaagaaaaatcaatgtacaaag
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36188078 272 +  58131712 gggaaaatttaactataaaaataaatctaggtaaatgagaacatttgaagataccaacaatagaaaaaaatgtaacaggtataaagttgtagcacctttaaaagctcaaggcccagttgtgtctcaagcagatcctcttaaacttaatggaaaagttaattcctgtgttgttcaaactattcttttggttaatgggagcaa---aggaagcatatctctccctcc-atttatttcttaaaacaactgaaaaccaaaagaaaaatcaatgtacaaag
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58113934 255 - 182113224 AAGGaaatttaaattataaaataaataaCGAGAAA-GCTATTATCTGCCTATTCCATCAAAAGAAAAAAA--------AAATCAAACCATGTTACTCCTGAATGCTAGAGACCAGATGATGTTTCAGGTGGATCCTAGTAAACTCGA-AAAAAAGTTA--TCCCGTGTT-TCTAAGTAGTTTTTCTAGTTAGCAAGAGAAAGGGAGGGGGCCCAACTCTGCCTTTAACTTTATTATTAACATAGTTTTGGAAAAACAGGTAAGTGAGA--------
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58810659 273 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=2125.000000
s hg38.chr14_KI270725v1_random    158216 2 +    172810 aa
s panTro4.chrUn_GL393505          299246 1 +   1195001 -a
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58810932 2 + 158137892 aa
i gorGor3.chr7                 I 273 I 5080
s ponAbe2.chrUn                  5822941 2 +  72422247 AA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542845 2 + 121039945 aa
i nomLeu3.chr6                 C 0 C 0
s mm10.chr2                     58114189 2 - 182113224 AA
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e rheMac3.chr7                 145882455 0 - 170124641 C
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I
e chlSab2.chr26                 36188350 0 +  58131712 C
e papAnu2.chr7                 140799855 0 - 162156779 C
e macFas5.chr7                 147872828 0 - 171882078 C

a score=421349.000000
s hg38.chr14_KI270725v1_random    158218 176 +    172810 aaaaaaactccaccaattttgttaaaaataaacaccattaaaaattataaaccaaaCTTTGAAGACTAGTTGTTAGTGTCATTACAATTTAGCCTTTCTTCAAAAAATGATGAGAGTAGTTGCAGGCACCTGAGCAAATATGGCATATTAAACACATAGAGAGACTTATTTTCCCA
s panTro4.chrUn_GL393505          299247 176 +   1195001 aaaaaaactccaccaattttgttaaaaataaacaccgttaaaaagtataaacCATACTTTGAAGACTAGTTGTTAGTGCCATAACAATTTTGCCTTTATTCAAAAAATGGTGAGAGTAGATGCAGACACCTGAGCAAATATGGCATATTAAACACATAGAGATACTTATTTTCCCA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5822943 173 +  72422247 --AAAAACTCCACTAATTTTGTTAAAAAC-AACACCATTAATAATTATAAACCAAACTTTGAAGACTAGTTGTTAGTGCCATAACAATTTAACCTTTCTTCAAAACATGGTGAGAGTAGATGCAGATAACTGAGCAAATATGGCATATTATACACATAGAGAGACTTATTTTCCCA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53542847 174 + 121039945 --aaaaactccaccaattttgttaaaaataaacaccattaaaaattctaaaccaaaCTTTGAAGACTAGTTTTTAGTGCCATAACAATTTAGCCTCTCTTCAAAACATGGTGAGAGTAGATGCAGATCCCTGAGCAAATATGGCATGTGAAACATATACAGAGACTTATTTTCCCA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145882455 176 - 170124641 aaaaaaactctaccaattttgttaaaaataaacaccattaaaaattctaaaccaaaCTTTGAGGACTAGTTGTTCGTGCCATAACAAGTTAACCTTTCTTCAAAAAATGGTGGGAGTAGATGCAGACACTTGAGCAAATATGGCATGTTAAACACATATAGAGACTTATTTTCCCA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147872828 176 - 171882078 aaaaaaactctaccaattttgttaaaaataaacaccattaaaaattctaaaccaaaCTTTGAGGACTAGTTGTTCGTGCCATAACAAGTTAACCTTTCTTCAAAAAATGGTGGGAGTAGATGCAGACACTTGAGCAAATATGGCATGTTAAACACATATAGAGACTTATTTTCCCA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140799855 176 - 162156779 aaaaaaactctaccaattttgttaaaaataaacaccattaaaaattccaaaccaaattttGAGGACTAGTTGTTAGTGCCATAACAAGTTAACCTCTCTTCAAAAAATGGTAAGAGTAGATGCAGACACCTGAGCAAATATGGCATGTTAAACACATATAGAGACTTATTTTCCCA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36188350 176 +  58131712 aaaagaactctaccaattttgttgaaaataaacaccattaaaaattctaaaccaaattttgagcaCTAGTTGTTAGTGCCATAACAAGTTAACCTCTCTTCAAAAAATGGTGAGAGTAGATGCAGACACCTGAGCAAATATGGCATGTTAAACACATATAGAGACTTATTTTCCCA
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58114191 168 - 182113224 GGGAAAATTCCAACAATTTAGCTAAAGGTAACCAAC-CTGAAAATTGTAAACCAGACTCTGAAGAACTGTTCTGAGAATCAC-ACAGTTGAGCTTCTCTTCAGAAAG-AGCAAGAGTAGGCATGAACACATGAGTATGTGTGATGTACTGCACCT---CAGAACTTTGTGCCCT--
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e gorGor3.chr7                  58810934 5080 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=406002.000000
s hg38.chr14_KI270725v1_random    158394 135 +    172810 CCTGAAACTATAACATGATGACAAATGGCTTATTCAAGTGATATAAAAagaaaacagcaacatttttgaaaacaggaagtccataaatggctggtaactgacttagcttaccaaaaagtgtaaaattgtaagtag
s panTro4.chrUn_GL393505          299423 135 +   1195001 TCTGAAACTATAACATGAAGGCAAATGGCTTATTCAAGTGATATAAAAagaaaacagcaacatttttgaaaataggaagtccataaatggctggtaactgacttagcttaccaaaaagtgcaaaattgtaagtag
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58816014 135 + 158137892 CCTGAAACTATAACATGATGGCAAATGGCTTATTCAAGTGATATgaaaagaaaacagcaacatttttgaaaataggaagtccataaatggctggtaactgacttagcctaccaaaaagtgcaaaagtgtaagtag
i gorGor3.chr7                 I 5080 C 0
s ponAbe2.chrUn                  5823116 132 +  72422247 CCTGAAACTATAACCTGATGGCAAATGGCTTATTCAAGTGATAGAAAAagaaaacag---catttttgaaaataggaattctgtaaatggctggtaactgacctagcttaccaaaaagtgcaaaattgtaagcag
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53543021 135 + 121039945 CCTGAAACTATAACATGATGGCAAATGGTTTATTGAAGTGATATAAAAagaaaacggcaacatttttgaaaataggaagtccataaatggctggtaactgacttagcttaccaaaaagtgcaaaattgtaagtag
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145882631 134 - 170124641 -CTCAACCTATAACATGATGGCAAATGGCTTATTGAAGTGATATAAAAATAAaacagcaacatttttgaaaataggaagtccataaatggctggtaactgacttagcttaccaaaaagtgcaaaattgcaagtgg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147873004 134 - 171882078 -CTCAACCTATAACATGATGGCAAATGGCTTATTGAAGTGATATAAAAATAAaacagcaacatttttgaaaataggaagtccataaatggctggtaactgacttagcttaccaaaaagtgcaaaattgcaagtgg
i macFas5.chr7                 C 0 I 309
s papAnu2.chr7                 140800031 134 - 162156779 -CTCAACCTATAACATGATGGCAAATGGCTTATTGAagtgatacaaaaataaaacagcaacatttttgaaaataggaAGTCCATAAATGGCTGGTAACTGACTTAGCTTACCAAAAAGTGCAAAATTGCAAGTGG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36188526 133 +  58131712 -CTCAAACTATAACGTGATGGCAAATGGC-TATTGAAGTGATAAAAAAATAAaacagcaacatttttgaaaataggaagtccataaatggctggtaactgacttagcttaccaaaaagtgcaaaattgcaagtgg
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58114359 110 - 182113224 CTTGAAACTATAAAAGGGTGATAAGAAGTATAAT-AACTCATATAGGGG------AGTCACTTTTTTAAATA-AAGAGTTACATGGATGACTGATAACTTATTTACCTGCTGAATGAG-----------------
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=3103.000000
s hg38.chr14_KI270725v1_random    158529 2 +    172810 cg
s panTro4.chrUn_GL393505          299558 2 +   1195001 ag
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58816149 2 + 158137892 cg
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5823248 2 +  72422247 cg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53543156 2 + 121039945 cg
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145882765 2 - 170124641 ca
i rheMac3.chr7                 C 0 I 309
s macFas5.chr7                 147873447 2 - 171882078 ca
i macFas5.chr7                 I 309 C 0
s papAnu2.chr7                 140800165 2 - 162156779 Ca
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36188659 2 +  58131712 cg
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58114469 0 - 182113224 C
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=23904.000000
s hg38.chr14_KI270725v1_random    158531 7 +    172810 gggaaat
s panTro4.chrUn_GL393505          299560 7 +   1195001 gggaaat
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58816151 7 + 158137892 gggaaat
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5823250 7 +  72422247 gggaaat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53543158 7 + 121039945 gggaaat
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145883076 7 - 170124641 gggaaat
i rheMac3.chr7                 I 309 C 0
s macFas5.chr7                 147873449 7 - 171882078 gggaaat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140800167 7 - 162156779 gggaaat
i papAnu2.chr7                 C 0 I 295
s chlSab2.chr26                 36188661 7 +  58131712 gggaaat
i chlSab2.chr26                C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58114469 0 - 182113224 C
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=1927264.000000
s hg38.chr14_KI270725v1_random    158538 652 +    172810 ctgattctacaaaatgttcataaattggttgcacgggatacctctgaaagtagaagtaaaggtagggctaaaacccaggaagattggttgaaagactgtttC-CAATGTCCACTCCATCAAGCCGCATGAATGCCTCTAGGTTCTGCTGGTGGAAAAGTAGACATTTGCTGTCT---AGAGAGGTAAC--AAGGAATCTTAGTACTGGCAATATCATCTTCAATGGTCATACATAAATTAGGG--GTGCAAAACGAACAG-TAACtactgaaagct-agatctccccaattttcacctctatctagattcaaaacataacagtctattagtcttatatcctcagagaagactggaagactctagttggaagatcatgatcagcccaaaggaatagaccagtggatatgtcatgaggagcttttctgggaaaacttctcgacctgattgccctgtctggaagccacagttgacaattattacctaagaacctgaagcttaccgtaaacatttattgtattgctcttgaacgcaaacagataacaaacaatcatgagattctaggtacagccaataacaaacac-----agaaac-aaaaaata-aacaaaac-----aactgaaagtaaacagagtctatgcag---------tgtgggaaaaaag----------taattattaatttcctca
s panTro4.chrUn_GL393505          299567 648 +   1195001 ctgattctacaaaatgttcataaataggttgcatgggatacctctgaaagtagaagtaaaggtagggctaaaacccaggaagattgattgaaagactgtttc-caatgcccactccatcaagcctcatgaatgcctctaggttctgctggtggaaaagtagatatttgctgtct---ggagaggtaac--agggaatcttagtactggcaatatcatcttcaatggtcatacataaattaggg--gggcaaaatgaacag-taactactgaaagct-agatctccccaattttcacctctatctagattcaaaacataa----ctattagtcttatatcctcagagaagactggaagactctacttggaagatcatgatcagctgaaaggaatagaccagtggatatgtcatgaggagcttttctgggaaaacttcttgacctgattgccctgtctggaagccacagttgacaattattacctaagaacctgaagcttaccataaatgtttattgtattgctcttgaacacaaacagataaccaactatcacgagattctaggtacagccaataacaaacac-----agaaac-aaaaaata-aacaaaac-----atctgaaagtaaacagagtctatacaa---------tgtgggaaaaaag----------taattattaatttcctca
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58816158 654 + 158137892 ctgactctacaaaatgttcataaattggttgcatgggatacctctgaaagtagaactaaaggtagggctaaaacccaggaagattggttgaaagactgtttc-caatgcccgcgccatcaagcctcattaatgcctctaggttctgctggtggaaaagtagacatttacagtct---agagaggtaac--agggaatcttagtacaggcaatatcatcttcaatggtcatacataaattatgaccgtgtaaaatgaacag-taactactgaaagct-agatctcccaaattttcacctctatctagattcaaaacataacagtctattagtcttatatcctcagagaagactggaagattctagttggaagatcatgatcagcccaaaggaatagaccagtggatatgtcatgaggagcttttctgggaaaacttctctacctgattgccctgtctggaagccgcagttgacaattattacctaagaacctgaagcttaccataaacatttattgtattgctcttgaacacaaacagataaccaacaatcacgagattctaggtacagccaataacaaacac-----agaaac-aaaaaata-aacaaaac-----aactgaaagtaaacagagtctatacag---------tgtggggaaaaag----------taattattaatttcctca
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5823257 651 +  72422247 ctgattctacaaaatgttcataaattggttgcacgggatacctctgaaagtagaagtaaaggtaggactaaaacccaggaagattggttgaaagactgtttc-caacgcccacttcatcaatcttcgtgaatgcctctaggttctgctggtggaaaagtagacatctgctgtct---agagaggtaac--agggaatcttagtactggcaatatcatcttcattggtcatacataaattaggg--gggcaaaatgaacag-taactactgaaagct-agatctccccaattttcacctctatctagattcaaaaaataacagtctactagtcttatatcctcagagaagactggaagactctagttggaagatcatgatcagcccaaaggaataga-cagtggatatgtcatgaggtgcttttctgggaaaacttctcaacctgatggccctgtctggaagccacagttgaaaattatttcctaagaacctgaagcttaccataaacatttattgtattgctcttgaacacaaacagataaccaacaatcacgagattctaggtacagccaataacaaacac-----agaaac-aaaaaata-aacaaaac-----aactgaaagtaaacagagtctatacag---------tgtgggaaaaagg----------taattattaatttcctca
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53543165 647 + 121039945 ctgattctgcaaaatgttcatacattggttgcacgggatacctctgaaagtagaagtaaaggtagggctaaaacccagaaagattggttggaagactgtttC-CAATGCCCACTC---CAAGTCTCGTGAATGCCTCTAGATTCTGCTGGTGGAAAAGTAGACATTTGCCATCT---AGAGAGGTAAC--AGGGAATCTTAGTACTGGCAACATCATCTTCATTGGTcatacataaattaggg--gggcaaaatgaacag-taactactgaaagct-agatctccccaattttcacttctatctagattcaaaacataacagtctgttagtcttatatcctcagagaagactggaagactctagttggaagatcatgatcagcccaaaggaatagaccaatggatatgtcatgaagggcttttcggggaaaacttcttgacctgattgccctgtctggaagccacagttgagaattagtacctaagaacctgaagcttaccgtaaacgtttattgtattgctcttgaacacaaacagacaaccaataatcacgagattctaggtacagccaataacaaacac-----agaaacaaaaaaata-aacaaaac-----aactggaagtaaacagagtctatacag---------tgtgggaaaaa-------------aattattaatttcctca
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145883083 653 - 170124641 cttattctgcaaaatgttcataaattggttgcacgggatacctctgaaagtacaagtaaaggtagggctaaaacccaggaagatttattggaagactgtttc-cagtgcccactccatcaagccttgtgaaaggctctaggttctgctggtggaaaagtacacatttaccatct---agagaggtaacacagggaatcttagtactggcaatctcatcttcattgg-catatgtaaattaggg--ggccaaaatgaacag-taattactgaaaggt-agatctccccaattttcacctctatctagatttaaaacctaactgtctattagtcttatattctcagagaagactggaagactctagttggaagatcatgatcagcccaaaggaatagaccaatggatatgtcatgagaggcttttctgggaaaacttctcaacctgattgccctgtcttgaagccacagttgagaattattacctaagaacctgaagcttaccgtaaacgtttattatattgctgtggaacacaaatagataacaaacgatcacgagattctaggtacagtcaacaacaaacac-----agaaac-aaaaaata-aacaaaac-----aactggaagtaaacagagtctatacag---------tgtgggaaaaaag----------taattattaatttcctca
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147873456 653 - 171882078 cttattctgcaaaatgttcataaattggttgcacgggatacctctgaaagtacaagtaaaggtagggctaaaacccaggaagatttattggaagactgtttc-cagtgcccactccatcaagccttgtgaaaggctctaggttctgctggtggaaaagtacacatttaccatct---agagaggtaacacagggaatcttagtactggcaatctcatcttcattgg-catatgtaaattaggg--ggccaaaatgaacag-taattactgaaaggt-agatctccccaattttcacctctatctagatttaaaacctaactgtctattagtcttatattctcagagaagactggaagactctagttggaagatcatgatcagcccaaaggaatagaccaatggatatgtcatgagaggcttttctgggaaaacttctcaacctgattgccctgtcttgaagccacagttgagaattattacctaagaacctgaagcttaccgtaaacgtttattatattgctgtggaacacaaatagataacaaacgatcacgagattctaggtacagtcaacaacaaacac-----agaaac-aaaaaata-aacaaaac-----aactggaagtaaacagagtctatacag---------tgtgggaaaaaag----------taattattaatttcctca
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140800469 654 - 162156779 CTTATTCTGCAAAATGTTCATAAATTGGTTGCACGGGATACCTCTGAAAGTACAAGTAAAGGTAGGGCTAAAACCCAGGAAGATTGATTGGAAGACTGTTTC-CAGTGCCCACTCCATCAAGCCTTGTGAAAGGCTCTAGGTTCTGCTGGTGGAAAAGTACACATTTACCATCT---AGAGAGGTAACACAGGGAATCTTAGTACTGGCAATCTCATCTTCATTGG-CATATGTAAATTAGGG--GGCCAAAATGAACAG-TAATTACTGAAAGGT-AGATCTCCCCAATTTTCACCTCTGTCTAGATTTAAAACCTAACAGTCTATTAGTCTTATATTCTCAGAGAAGACTGGAAGACTCTAGTTGGAAGATCATGATCAGCCCAAAGGAATAGACCAATGGATATGTCATGAGAGGCTTTTCTGGGAAAACTTCTCAACCTGATTGCCCTGTCTTGAAGCCACAGTTGAGAATTATTACCTAAGAACCTGAAGTTTACTGTAAACATTTATTGTATTGCTCTTGAACACAAATAGATAACAAACGATCACGAGATTCTAGGTACAGTcaacaacaaacac-----agaaacaaaaaaata-aacaaaac-----aactggAAGTAAACAGAGTCTATACAG---------TGTGGgaaaaaag----------taattattaattTCCTCA
i papAnu2.chr7                 I 295 C 0
s chlSab2.chr26                 36188668 653 +  58131712 cttattctgcaaaatgttcataaattggttgcacgggatacctctgaaagtacaagtaaaggtagggctaaaacccaggaaaattgattggaagactgtttC-CAGTGCCCACTCCATCAAGCCTTGTGAAAGGCTCTAGGTTCTGCTGGTGGAAAAGTACACATTTACCATCT---AGAGAGGTCACATAGGGAATCTTAGTACTGGCAATATCATCTTCATTGG-CATATGTAAATTACGG--GGCCAAAATGAACAG-TAACtactgaaggct-agatctccccaattttaacctctatctagattcaaaacataacagtctattagtcttatattctcagagaagactggaagactctagttggaagatcatgaacagcccaaaggaatagaccaatggatatgtcatgagaggcttttctgggaaaaattctcaacctgattgccctgtcttgaagccacagttgagaattattacctaagaacctgaagcttaccgtaaacgtttattgtattgctcttgaacacaaacagataaccaatgatcacaagattctaggtacagccaacaacaaacac-----agaaac-aaaaaata-aacaaaac-----aactggaagtaaacagagtctatacag---------tgtgggaaaaaag----------taattattaatttcctca
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58114469 521 - 182113224 ----------AGAACAGTTCTTATCTGGCAGTAAGG-----------AAAGGGAAGGGAGGGGAGGGCTATGGCAGAGGAA----------AGGACTGTGGCACAAGCCTCATTTTCAGCAGTGCTAGCACTGCCTCTGGGTCCTA-TGGCCAAGAAGTAG--ATTTGCTTTCTTACAGAGAAGTAAAACACAATTCCTCAGAACAAGCAATATCAACTTAACTGGTAATGAATCCAAAAGAG--GTTAAAAGCAAACAGCCAATGCCTGAAGGCTAAGACCTCCC-----------------------------------------TGGTCTTCTCTCTCCAA---------------TCAGGTTGGAGGA------------------AAGTGTCCTGTGG-TATGTTATA---------TATGTGGTGACT----------------------------CACACTGGACAATGGTT-CTTGATGATATAAAGTTCA--------------TGTA-TGCTCCTGTGTACAAAGAGATAAAAGA-----ACAAGAATGTAGACAGGGTTTTTAAGATACATTGGGGAAAATT-AAGAAACAGAACAAAACTGTCTATGTGGAAATGG--AAATGCTATGTAGCTATTTTTTTTTgagagaaaggaggaggaggatagtgatggagggaggca
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26804904 4140 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=134896.000000
s hg38.chr14_KI270725v1_random    159190 46 +    172810 gagagggaagataaga------taata--------caacaagaacaaggtgtgatataaa
s panTro4.chrUn_GL393505          300215 46 +   1195001 gagagggaagataaga------taata--------caacaagaacaaagtgtgatataaa
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58816812 46 + 158137892 gagagggaagataaga------taata--------caacaaggacaaggtgtgatataaa
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5823908 46 +  72422247 gagagggaagataaga------taata--------caacaagaacaaggtgtgatataaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53543812 41 + 121039945 gagagag-----aaga------taata--------caataagaacacggtgtgacataaa
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145883736 41 - 170124641 gagaggg-----aaga------taata--------caccaagaacaaggtgtgatataaa
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147874109 41 - 171882078 gagaggg-----aaga------taata--------caccaagaacaaggtgtgatataaa
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140801123 41 - 162156779 GAGAGGG-----AAGA------TAATA--------CACCAAGAACAAGATGTGATATAAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36189321 41 +  58131712 gagaggg-----aaga------taata--------caccaagaacaaggtgtgatataaa
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58114990 51 - 182113224 gagaagg-agagaagaaaggagaaaga--------gaATAGGAATAAGGTGTGTTAGAGA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26809044 48 -  40214260 gaaataa-----aagg------taatacactcatgcaataagaataagatatgagataa-
i canFam3.chr30                I 4140 C 0
e panPan1.JH650621               9124067 4650 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=3785.000000
s hg38.chr14_KI270725v1_random    159236 1 +    172810 a
s panTro4.chrUn_GL393505          300261 1 +   1195001 a
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9128717 1 -  12672142 a
i panPan1.JH650621             I 4650 I 242
s gorGor3.chr7                  58816858 1 + 158137892 a
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5823954 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53543853 1 + 121039945 a
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145883777 1 - 170124641 a
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147874150 1 - 171882078 a
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140801164 1 - 162156779 A
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36189362 1 +  58131712 a
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58115041 1 - 182113224 G
i mm10.chr2                    C 0 C 0
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26809092 0 -  40214260 C
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=733727.000000
s hg38.chr14_KI270725v1_random    159237 244 +    172810 tggatattcaaaaa----aatagaattcttaaaaattaagaaatttattgcagaaatatataacttaatgggagatttggaaggtaaagctgactgcaactgc-agaaaagttagtgta-aacagagttgggaatgagaaagggaaagtttaatgaattaaataattggtcctatagggccagcaac-aaaatac--------aggcatttgggaaaag-aaaaaagtaaaatgaagtatgatatatgta-----------------------------------------------aatac-ttttt
s panTro4.chrUn_GL393505          300262 243 +   1195001 tggatattcaaaaa----aatagaattcttaaaaattaagaaatttattgcagaaatatataacttaatgagagatttggaaggtaaagctgactgcatctcc-agaaaagttagtgta-aacagagttgggaatgagaaagggaaagtttaatgaattaaataattggtcctatagggccagcaac-aaaatac--------aggcatatgggaaaag-aaaaaa-tacaatgaagtataatatatgta-----------------------------------------------aataa-ctttt
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58816859 187 + 158137892 tggatattcaaaaa----catagaattcttaaaatttaagaaatttattgcagaaatatataacttaatgggagatttggaaggtgaagctgactgcatctcc-agaaaagttagtgta-aacagagttgggaatgagaaagggaaagtttaatgaattaaataattggtcT-------------------------------------------------------------------TGATATATGTA-----------------------------------------------AATAA-TTTTT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5823955 241 +  72422247 tggatattcaaaaa----aatagaattcttaaaatttaagaaatttattgcagaaatatataacttaatgggatatttggaagttaaagctgactgcaactcc-agaaaagttagtgta-aacagagttgggaatgagaaagggaaagtttaatgaattaaataattggtcctatagggcca--aac-aaaatac--------aggcatttgggaaaag-aaaaaaatacaatgaagtatgatatatata-----------------------------------------------aattt-tttt-
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53543854 245 + 121039945 cggatattcaaaaa----aatagaattcttaaaaattaagaaatttattacagaaatgtataacttaatgggagatttggaaggtaaagctgactgcatctcctggaaaagttagcgta-aacagagttgggaatgagaaagggacagtttaatgaattaaataattggtcctatagggccagcaac-aaaatac--------aggcatttgggaaaag-aaaaaaatacaatgaagtatgatatatata-----------------------------------------------aataa-ttttt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145883778 245 - 170124641 tggatatccaaaaa-----atagaattcttaaaaattaagaaatttattgcagaaatgtataagttaatgggagatctggaaggtaaagctgattgcatctcctggagaagttagtgta-aacagagttgggagtgagaaagggaaagtttaacgaactacataattggtcctatagggccagcaac-aaaatac--------aggcatttgggaaaag-aaaaaaatacaatgaagtatgatatatata-----------------------------------------------aataatttttt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147874151 245 - 171882078 tggatatccaaaaa-----atagaattcttaaaaattaagaaatttattgcagaaatgtataagttaatgggagatctggaaggtaaagctgattgcatctcctggagaagttagtgta-aacagagttgggagtgagaaagggaaagtttaacgaactacataattggtcctatagggccagcaac-aaaatac--------aggcatttgggaaaag-aaaaaaatacaatgaagtatgatatatata-----------------------------------------------aataatttttt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140801165 244 - 162156779 TGGATATCCAAAAA-----atagaattcttaaaaattaagaaatttattgCAGAAATGTATAAGTTAATGGGAGATCTAAAAGGTAAAGCTGACTGCATCTCCTGGAGAAGTTAGTGTG-AACAGAGTTGGGAATGAGAAAGGGAAAGTTTAATGAACTAAATAATTGGTCCTATGGGGCCAGCAAC-AAAATAC--------AGgcatttgggaaaag-aaaaaaatacaatgaagtataatatatata-----------------------------------------------aataa-ttttt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36189363 245 +  58131712 tggatatccaaaaa-----atagaattcttaaaaattaagaaatttattgcagaaatgtataagttaatgggagatctggaaggtaaagctgactgcatctcctggagaagttagtgca-aacagagttgggaatgagaaagggaaagtttaatgaactaaataattggtcctatagggccagcaac-gaaatac--------aggcatttgggaaaagaaaaaaaatacaatgaagtatgatatatata-----------------------------------------------aataa-ttttt
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58115042 274 - 182113224 TAAATATGAAAACATTATAGTAGA------AGAAACTAA-AATTTTGTTG-AAAAGTGTTTAAT------AGTCATTATGAAGACAAAGCTGGCTGCATCTCTTGAAAAAGTAATTGGA-CATAAG---AGAAAGTAGAGCAGAGAAACGGAATGAGTTAAA-GACCAGTCCT-TAGCACCCACTGT-GACACAT--------AGACATTT---AAGAG-AGACCAGTAAAGTGAGGGACAGCatatatatatatatatatatatatatatatatatatatatatatatatatataGAATGA-TTTTT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26809092 259 -  40214260 tgaattaacaaaagatttaatagaattcttaataattaaaaattttattgtaaaaatatataacttaccagttgattttgaagataaagttgactgtatatcctggaaaattgagtaaataagatactttgaaattgggaaagaaaagtttagtgaaataaaatatcagtccaatgggaccaacagctaaaatatagagtgaaagagatctctaatgac-agaacagtacactggagtgtgatatacata-----------------------------------------------aataa-ttttt
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9128718 242 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=6006.000000
s hg38.chr14_KI270725v1_random    159481 1 +    172810 t
s panTro4.chrUn_GL393505          300505 1 +   1195001 t
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9128960 1 -  12672142 t
i panPan1.JH650621             I 242 I 147
s gorGor3.chr7                  58817046 1 + 158137892 T
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5824196 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53544099 1 + 121039945 t
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145884023 1 - 170124641 t
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147874396 1 - 171882078 t
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140801409 1 - 162156779 t
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36189608 1 +  58131712 t
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58115316 1 - 182113224 T
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26809351 1 -  40214260 t
i canFam3.chr30                C 0 C 0
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=281646.000000
s hg38.chr14_KI270725v1_random    159482 74 +    172810 gaaatgggtaagagttaaagtgcatgaa-tttcagattgaatgtatccacgagaattcaagccagtgg-tgaaaat
s panTro4.chrUn_GL393505          300506 74 +   1195001 gaaatgggtaagagttaaagtgtatgaa-tttcagattgaatgtgtccaccagaattcaagccagtgg-tgaaaat
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58817047 74 + 158137892 GAAATGGGTAAGAGTTAAAGTGTATGAA-TTTCAGATTGAATGTGTCCACCAGAATTCAAGCCAGTGG-TGAAAAT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5824197 74 +  72422247 gaaatgggtaagagttaaagtgtatgaa-tttcagattgaatgtgtccaccagaattcaagccagtgg-tgaaaat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53544100 74 + 121039945 gaaatgggtaagagttaaagtgtatgaa-tttcaggttgaatgtgtccaccagaattcaaaccagtgg-tgaaaat
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145884024 74 - 170124641 gaaatgggtaagagttcaagtgtatgaa-tttcagattgaatgtgtccaccagaattcaagccagtgg-tgaaaat
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147874397 74 - 171882078 gaaatgggtaagagttcaagtgtatgaa-tttcagattgaatgtgtccaccagaattcaagccagtgg-tgaaaat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140801410 74 - 162156779 gaaatgggTAAGAGTTCAAGTGTATGAA-TTTCAGATTGAATGTGTCCACCAGAATTGAAGCCAGTGG-TGAAAAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36189609 74 +  58131712 gaaatgggtaagagttcaagtgtatgaa-tttcagattgaatgtgtccaccagaattcaagccagtag-tgaaaat
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58115317 73 - 182113224 TAAAT-GGTAAGGAAACAAAAACAGAAA-TTTCAAATAATGTACTTCTATCAGAGGCCATGTCTGTAG-ATAAAAT
i mm10.chr2                    C 0 I 24
s canFam3.chr30                 26809352 76 -  40214260 aaaaggggtgagaactaaagttcatgagttttcaaattgaatgtattcaccacggttcaacctagtagatgaaaat
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9128961 147 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=72972.000000
s hg38.chr14_KI270725v1_random    159556 38 +    172810 agacctagaccaacgca----------------------------------------cacacacacacacacacacac
s panTro4.chrUn_GL393505          300580 38 +   1195001 agacctagaccaacaca----------------------------------------cacacacacacacacacacac
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58817121 38 + 158137892 AGACCTAGACCAacaca----------------------------------------cacacacacacacacacacac
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5824271 38 +  72422247 agacctagatcaacaca----------------------------------------cacacacacacacatacacac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53544174 38 + 121039945 agacctagaccaacaca----------------------------------------cacacacacacacacacacac
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145884098 76 - 170124641 agatctatactaacataaagcaaacaaattgtatcccca-gctctcaccta-gcacgcacacacacacacacacacac
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147874471 66 - 171882078 agatctatactaacata------------cgcatgcgcgcgcacacacacacacacacacacacacacacacacacac
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140801484 54 - 162156779 AGACCTAAACTAACATA------------CGCATGCGTG------------cacgcccacacacacacacacacacac
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36189683 70 +  58131712 agacctatactaaCATA--------CCCGCGCACGCGGGcacgcacacacacgcgcgcgcgcgcacacacacacacac
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26809428 36 -  40214260 agacctataccaacatc----------------------------------------aagaaaaata-atgaagaaa-
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9128961 147 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58115390 24 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=21041.000000
s hg38.chr14_KI270725v1_random    159594 11 +    172810 ac---------------------------------------------------------cagcacact
s panTro4.chrUn_GL393505          300618 19 +   1195001 ac-------------------------------------------------acacacatcagcacact
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58817159 19 + 158137892 ac-------------------------------------------------acacaTATCAGCACACT
i gorGor3.chr7                 C 0 I 1
s ponAbe2.chrUn                  5824309 68 +  72422247 acacaccacacacacacacacacacacacacacatacacacacacacacacacacaaatcagcacact
i ponAbe2.chrUn                C 0 I 1
s nomLeu3.chr6                  53544212 17 + 121039945 ac---------------------------------------------------acatcacagcacacT
i nomLeu3.chr6                 C 0 I 1
s rheMac3.chr7                 145884174 33 - 170124641 ac-----------------------------------acacagaaaatcatgaaaaaatcagcacact
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147874537 33 - 171882078 ac-----------------------------------acacagaaaatcatgaaaaaatcagcacact
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140801538 33 - 162156779 ac-----------------------------------acacagaaaatcatGAAAAACTCAGCACACT
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36189753 33 +  58131712 ac-----------------------------------acacacaAAATCATGAAAAAATCAGCACACT
i chlSab2.chr26                C 0 I 1
s mm10.chr2                     58115414 11 - 182113224 ---------------------------------------------------------ATCAGCATACT
i mm10.chr2                    I 24 I 2
s canFam3.chr30                 26809464 11 -  40214260 ---------------------------------------------------------atcagcacact
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9128961 147 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=-13593.000000
s hg38.chr14_KI270725v1_random    159605 2 +    172810 ca-
s panTro4.chrUn_GL393505          300637 2 +   1195001 cc-
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9129108 1 -  12672142 -a-
i panPan1.JH650621             I 147 I 1478
s gorGor3.chr7                  58817179 2 + 158137892 CA-
i gorGor3.chr7                 I 1 C 0
s ponAbe2.chrUn                  5824378 1 +  72422247 c--
i ponAbe2.chrUn                I 1 I 1
s nomLeu3.chr6                  53544230 2 + 121039945 CG-
i nomLeu3.chr6                 I 1 I 6
s rheMac3.chr7                 145884208 1 - 170124641 c--
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147874571 1 - 171882078 t--
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140801572 1 - 162156779 c--
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36189787 1 +  58131712 C--
i chlSab2.chr26                I 1 C 0
s canFam3.chr30                 26809475 2 -  40214260 -ga
i canFam3.chr30                C 0 C 0
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58115425 2 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=193046.000000
s hg38.chr14_KI270725v1_random    159607 66 +    172810 gg----aaaaaaaaaaagaagagacttaaaatttccagagaagagaa--atataaatggtcactagaaaaca
s panTro4.chrUn_GL393505          300639 70 +   1195001 ggaaaaaaaaaaaaaaagaagacacttcaaattttcagagaagagaa--ataaaaatggtcactagaagaca
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58817181 66 + 158137892 ----GAAAAAAAAAAAAGAAGACACTTCAAATTTCCAGATAAGAGAA--ATAAAAATGGTCActagaagaca
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5824380 70 +  72422247 gaaaaaaaaaaaaagaagaagacacttcaaatttccagagaagagaa--ataaaaatggtcactggaagaca
i ponAbe2.chrUn                I 1 C 0
s nomLeu3.chr6                  53544238 66 + 121039945 ----aaaaaaaaaaaaagaaGTTACTTCAAATTTCCAGAGAAGAGAA--ATAAAAATGGTCActagaagaca
i nomLeu3.chr6                 I 6 C 0
s rheMac3.chr7                 145884209 68 - 170124641 --ggaaaaactaaaaaagaagatacttcaaacttccagagaggagaa--ataaaaatcctcactggaagata
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147874572 68 - 171882078 --ggaaaaactaaaaaagaagatacttcaaacttccagagaggagaa--ataaaaatcctcactggaagata
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140801573 68 - 162156779 --ggaaaaactaaaaaagaagatACTTCAAACTTccagagaggagaa--ataaaaatcctcaCTGGAAGATA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36189788 68 +  58131712 --GGAAAAAATTAAAAAGAAGATACTTCAAACTTCCAGAGAGGAGAA--ATAAAACTTCTCActggaagata
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58115427 51 - 182113224 -----GGAAATAAAA----------TTCAAATTTCCAGAGTGGAAAA--ATGG----GGTCACTAAGAGACA
i mm10.chr2                    I 2 I 4299
s canFam3.chr30                 26809477 62 -  40214260 ----------gataaaacaggataattctagctttctgagaggaaaagcaCAAAATAGGTCATtagaagata
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9129109 1478 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=449529.000000
s hg38.chr14_KI270725v1_random    159673 152 +    172810 ----agcaaagccttataaattgcaaaac-aaattatttctaatgcagaatag-tatctccaaccaaac--taaatcagataggaggaaacaataataagcatttacagcatggcaagattctaaaactctacatccaatacatcctatctcaggaattt
s panTro4.chrUn_GL393505          300709 154 +   1195001 ----agcaaagccttataaattgcaaaac-aaattatttctaatgcagaatag-tatctccaaccaaactgtaaatcagataggaggaaacaataataagcatttacagcatggcaagattctaaaactctacgtccaatacatcctatctcaggaattc
i panTro4.chrUn_GL393505       C 0 I 1
s gorGor3.chr7                  58817247 154 + 158137892 ----agcaaagcattataaattgcaaaac-aaattatttctaatgcagaatag-tatctccaaccaaactgtaaatcagataggaggaaacaataataagcatttacagcgtggcaagattctaaaactctacatccaatacatcctatctcaggaattt
i gorGor3.chr7                 C 0 I 4007
s ponAbe2.chrUn                  5824450 154 +  72422247 ----agcaaagccttataaattgcaaaac-aaattatttctaatgcagaatag-tatctccaaccaaactgtaaatcagataggaggaaacaataataagcatttacagcatggcaagattctaaaactctacatccaatacatcctatctcaggaattt
i ponAbe2.chrUn                C 0 I 1
s nomLeu3.chr6                  53544304 154 + 121039945 ----agcaaagccttataaattgcaaaac-aaattatttctaatgcagaatgg-tatgcccaaccaaactataaatcagataggaggaatcaataataagcatttacagcatggcaagattctaaaactctacattcaatacaccctatctcaggaattt
i nomLeu3.chr6                 C 0 I 1
s rheMac3.chr7                 145884277 148 - 170124641 ----aataaagccttatacattgcaaaacaaaattatttct-------aatag-tatgcgcaaccaaactagaaatcagataggtggaaacaatcataagcatttacaacattgcaagattctaaaactctacagccaatacatcctatctcaggaaatt
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147874640 148 - 171882078 ----aataaagccttatacattgcaaaacaaaattatttct-------aatag-tatgcgcaaccaaactagaaatcagataggtggaaacaatcataagcatttacaacattgcaagattctaaaactctacagccaatacatcctatctcaggaaatt
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140801641 148 - 162156779 ----AATAAAGCCTTATACAttgcaaaacaaaattatttct-------aatag-taTGCGCAACCAACCTAGAAATCAGAGAGGAGGAAACAATCATAAGCATTTACAACATTGCAAGATTCTAAAACTCTACAGCCAATACATCCTATCTCAGGAAATT
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36189856 141 +  58131712 ----aacaaagccttataaattgcaaaacaaaattatttct-------gatag-tatgcccaaccaaactagaaatcagataggaggaaacactcataagcattgacaacattgcaagattctaaaactctacagccaa-------tatctcaggaaatt
i chlSab2.chr26                C 0 I 1
s canFam3.chr30                 26809539 156 -  40214260 ggatatctacatcttataaattgtaagaa-aaattattttcaatgtagaatagttatgtctagtgaaactataagtca-ataagaggtattaataaaaagcattt-taatat-gcaagtttccaaaacaatacttccaatgcatactatctcagaaagtt
i canFam3.chr30                C 0 I 1
e panPan1.JH650621               9129109 1478 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58115478 4299 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=56670.000000
s hg38.chr14_KI270725v1_random    159825 16 +    172810 ctggagaagagtttca
s panTro4.chrUn_GL393505          300864 16 +   1195001 ctggagaagagtttca
i panTro4.chrUn_GL393505       I 1 C 0
s gorGor3.chr7                  58821408 16 + 158137892 ctggagaagagtttca
i gorGor3.chr7                 I 4007 C 0
s ponAbe2.chrUn                  5824605 16 +  72422247 ctggagaagaatttca
i ponAbe2.chrUn                I 1 C 0
s nomLeu3.chr6                  53544459 16 + 121039945 ctggagaagagtttca
i nomLeu3.chr6                 I 1 C 0
s rheMac3.chr7                 145884426 16 - 170124641 ttggagaagagtttca
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147874789 16 - 171882078 ttggagaagagtttca
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140801790 16 - 162156779 TTGGAGAAGAGTTTCA
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36189998 16 +  58131712 ttggagaagagtttca
i chlSab2.chr26                I 1 C 0
s canFam3.chr30                 26809696 16 -  40214260 ctggaagaatgttaca
i canFam3.chr30                I 1 C 0
e panPan1.JH650621               9129109 1478 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58115478 4299 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I
e calJac3.chr10                107991451 1300 - 132174527 I

a score=1569745.000000
s hg38.chr14_KI270725v1_random    159841 437 +    172810 ttgaaatgaggaagtaaatga-agaaagagtagggtataaagtacagggaatctcctgat-tattagatgtacagtatgtgtacacagcaacctgtgtaaattagagttatttag-aaaaaaattttcaaaaagataaatctgataaaatgtctaatgcttctgaatgcat-----------tatgag-------------actcattagaaaactggagtagagtttggagttggtactttgatacatacatagaaaaatgaaaaaaacaaaaa-ttt---taaaaaattgtcagtttaa-cggaaaaaatgttgtgtagacttgaaattcaatcatttatgctccatgtttcaggtgtgagtaacatttacctaattataacaGTACTAGtgttactggaaaaagaggtcccgatccacacttcaagagatggtttttgggcctcacacaggaaagaattcaaggtg
s panTro4.chrUn_GL393505          300880 433 +   1195001 ctaaaatgagtaagtaactga-agaaagagtagggtataaagtacagggaatctactggt-tgttagatgtacagtatgtgtacacagcaacctgtgtaaattagagctatctag-aaaaaaaatttctaaaagataagtctgataaaatgtctaatgcttctgaatgcat-----------tatgag-------------actcattagaaaactggggtagagtttggagttggtactttgatacatacatagaaaaacgaacaaaacaaaaa-ttt---taaaaaattgtcagtttaa-gggaaaaactgttgtgtagaaatgaaatttaatcatttatgctccatgtttcaggt----gtaacatttacctaattataacagtACTAGtgttactggaaaaagtggtcccaatccatgcttcaagagagggttcttgggcctcacacaggaaagaattcaaggtg
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58821424 436 + 158137892 ctaaaatgaggaaggaaatga-agaaagggtagggtataaagtacagggaatctcctggt-ttttagatgtacagtatgtgta-acagcaacctgtgtaaattagagctatctag-aaaaaaaatttcaaaaagataaatctggtaaaatgtctaatgcttctgaatgcat-----------tatgag-------------actcattagaaaactggggtagagtttgatgttgttactttgatacatacatagaaaaatgaacaaaacaaaaa-ttt---ttaaaaattgtcagtttaa-gggaaaaaatgttgtgtagaaatgaaattcaatcatttatgctccatgtttcagctgtgagtaacatttacctaattataacagtACTAGGgttactggaaaaagaggtcctgatccacacttcaagagagggttcttgggcctcacacaggaaagaattcaaggtg
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5824621 436 +  72422247 ctaaaatgaggaagtaaacta-agaaagagtagggtataaaatacagggaatctcctggt-tgttagatgtacagtatgtgtacacagcaacctgtgtaaattagagctatctag-aaaaaaaa-ttctaaaagataaatctgataaaatgtctaatgcatctgaacgcaa-----------tatgag-------------actcattagaaaactggggtagagtttggagttggtactttgatacatgcatagaaaaatgaacaaaacaaaaatttt---taaaaaattgtcagtttaa-gagaaaaa-tgttgtgtagaaatgaaattcaatcatttatgctccatgtttcaggtgtgagtaacatttacctaattataaCAGTACTAGtgttactggaaaaaggggtcccaatccacacttcaagagagagttcttgggcctcacacaggaaagaattcaaggtg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53544475 438 + 121039945 ctaaaatgaggaagtaaatga-ggaaagagtagggtataaagtacagggaatctcctggt-tgttagatgtatggtatgtgtacacagcaacctgtgtaaattagagctatctag-aaaacaaatttcaaaaagataaatctgataaaatagctaatgcttctgaatgcat-----------tatgag-------------actcattagaaaactggggtagaatttggagttggtactttgatacgtacatagaaaaccaaacaaaacaaaaa-ttt---ttaaaaattgtcagtttaaggggaaaaaatgttgtgtagaaatgaaattcaatcatttatgctgcatgtttcaggtgtgagtaacatttacctaattataacaGCACTAGtgttactggaaaaaggagtcctgatccagactttaagagagggttcttgggcctcacacagcaaagaattcagcgtg
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145884442 435 - 170124641 ctaaaatgaggaagtaaatgagggaaagagtaggttataaagtacagggaatttcctggt-tgttagatgtacagtatgtgtacgcagcaacctgtgtaaattggagctatctag-aaaaaaattttcaaaaagataaatctgataaaatgtctaatgcttctgaatgcat-----------tatgag-------------actcactagaaaactggggtagagtttggagttggtactttgatacgtacacagaaaactaaacaaaacaaaaa-ttt---aaaaaaattgtcagtttaa-ggggaaaaa---tgtgtagaaatgaaattcaatcatttatgccccatatttcaggtgtgagtaacatttacctaactataacagtACTAGtgttactggaaaaaggggtcctgatccagacttcaagaaagggttcttgggcctcaagcaggaaagaattcaaggtg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147874805 435 - 171882078 ctaaaatgaggaagtaaatgagggaaagagtaggttataaagtacagggaatttcctggt-tgttagatgtacagtatgtgtacgcagcaacctgtgtaaattggagctatctag-aaaaaaattttcaaaaagataaatctgataaaatgtctaatgcttctgaatgcat-----------tatgag-------------actcactagaaaactggggtagagtttggagttggtactttgatacgtacacagaaaactaaacaaaacaaaaa-ttt---aaaaaaattgtcagtttaa-ggggaaaaa---tgtgtagaaatgaaattcaatcatttatgccccatgtttcaggtgtgagtaacatttacctaactataacagtACTAGtgttactggaaaaaggggtcctgatccagacttcaagaaagggttcttgggcctcaagcaggaaagaattcaaggtg
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140801806 434 - 162156779 CTAAAATGAGGAAGTAAATGA-GGAAAGAGTAGGTTATAAAGTACAGGGAATTTCCTGGT-TGTTAGATGTACAGTATGTGTACGCAGCAACCTGTGTAAATTGGAGCTATCtag-aaaaaatttttcaaaaagataaatctGATAAAATGTCTAATGCTTCTGAATGCAT-----------TATGAG-------------ACTCACTAGAAAACTGGGGTAGAGTTTGGAGTTGGTACTTTGATACGTACAcggaaaactaaacaaaacaaaaa-ttt---taaaaaattgtcagtttaa-gggaaaaaa---tgtgtagaaatgaaatTCAGTCATTTATGCCCCATGTTTCAGGTGCGAGTAACATTTACCTAACTATAACAGTACTAGTGTTACTGGaaaaaggggtcctgatccagacttCAAGAAAGGGTTCTTGGGCCTCaagcaggaaagaattcaaggtg
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36190014 435 +  58131712 ttaaaatgaggaagtaaatga-gaacagagtaggttataaagtacagggaatttcctggt-cgttagatgtacagtatgtgtacacagcaacctgtgtaaattggagctatctagaaaaaaaattttcaaaaagataaatctgataaaatgtctaatgcttctgaatccat-----------tatgag-------------actcactagaaaactggggtagagtctggagttggtactttgatacctacacagaaaactaaacaaaacaaaaa-ttt---taaaaaattgtcagtttaa-gggaaaaaa---tgtgtagaaatgaaattcaatcatttatgctccatatttcaggtgtgagtaacatttacctaactataacagtACTAGtgttactggaaaaaggggtcccgatccagacttcaagagagggttcttgggcctcaagcaggaaagaattcaaggtg
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107992751 428 - 132174527 tcaaaaaaaaaaaaaaaaaaa-aaaaagagtaggggataaagtacagggaatctcctggt-tgttagatgtatagtatgtgtacacagcaacccatgtaaattagaactgtctag-aaaaaaaattttcaaaagataaatctgataaaatgtctaaggcttttgaatgcat-----------tatgag-------------actcattaggaaactggggtggagtttggagtttgtattttgatatatatgtagaaaac----caaaacaaaaa-ttt---t-aaaaattgccagtttaa-----aaaaacgttgtgtagaaatgaaatttaatcatttatcctccatgtatcaggtgtaagtaacatttacctaattaaaacagtatTAGtgttactggataaaggggtcctgatccagacttcaagagagggttcttaggcctcacacaggaaagaattcaaggtg
i calJac3.chr10                I 1300 C 0
s canFam3.chr30                 26809712 341 -  40214260 ctaaattgaataa-tatatga-ggaaagagaagggcataaggcataggaaTCCACCAGATATATAAGGAAGAGAGCATGTGTAAATATCAATCATTGTAAATCAGAACTA-ATGA-AAAAAATTCTTGAAAATGATAAAACTGTTAAAATACCTAATG--TCTGAatatattgatatatatatatgaatatatatatatatatTCATTAGACAGTTGGAGTACAGTTGGGAACTAA----TTTACATATATATG-------------AACaatag-tttcagtattagactattattttag-ag-----------atatagaagtaaaattca----------------------------------------------aaagcattgctaaattaattgaaagaa---------attt---cttcagaggaggg----------------------------------
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9129109 1478 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58115478 4299 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36214865 3272 -  36342412 I

a score=280445.000000
s hg38.chr14_KI270725v1_random    160278  90 +    172810 agtcacagagtacaatgag-aagaagacatagtttattgaaa-----------gctactgccttttagagtagggtgtcctcagaaagcaagca--aa-ggaatg
s panTro4.chrUn_GL393505          301313  58 +   1195001 agtcacagagtaccatgag-aagaagacatagtttat-------------------------------------------tcagaaagcaagtg--aa-ggaatg
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58821860  90 + 158137892 agtcacagagtacaatgag-aagaagacgtagtttattgaaa-----------gctactgccttttagagtagggcgtcctcagaaagcaagca--aa-ggaatg
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5825057  90 +  72422247 agtcacagattacaatgag-aagaagacatagtttattgaaa-----------gctactgccttttagagtagggcgtcctcagaaagcaagcg--aa-ggaatg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53544913  90 + 121039945 agtcacagagtacaatgag-aagaagacatagtttattgaaa-----------gctactgcctttcagagtagggcgtcctcagaaagcaagcg--aa-ggaaca
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145884877  90 - 170124641 agtcacagagtacaatgag-aagaagacatagtttatagaaa-----------gctgctgccttttagagtagggtgtcctcagaaagcaagca--aa-ggaacg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147875240  90 - 171882078 agtcacagagtacaatgag-aagaagacatagtttatagaaa-----------gctgctgccttttagagtaggatgtcctcagaaagcaagca--aa-ggaacg
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140802240  90 - 162156779 aGTCACAGAGTACAATGAG-AAGAAGACATAGTTTATAGAAA-----------GCTGCTGCCTTTTAGAGTAGGGTGTCCTCAGAAAGCAAGCG--AA-GGAACG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36190449  90 +  58131712 agtcacatagtacaatgag-aagaagatatagtttatagaaa-----------gctgctgccttttagagtagggtgtcctcagaaagcaagcg--aa-ggaatg
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107993179  86 - 132174527 agtctcagagtacaatgag-aagag---atagtttattgaaa-----------gctattgccgtctagagtagggcatcctcagaaagc-agtg--aa-ggagcc
i calJac3.chr10                C 0 C 0
s otoGar3.GL873530              36218137 101 -  36342412 ggtttcagaattaaactagtacttagatatggagaattgaaatccaaggaattgctacattaattgaaagaaatgtttcccaagaag--aagca--aatgggatg
i otoGar3.GL873530             I 3272 I 1785
s canFam3.chr30                 26810053  58 -  40214260 ----aca-aatgcaatgga-aggaa-----------ttg--------------gatattgccatt---------------ttatataacaagcattga-ggaagg
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9129109 1478 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58115478 4299 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I

a score=194507.000000
s hg38.chr14_KI270725v1_random    160368 63 +    172810 caccctctttgttttcagtttttttgttataggagttttgtc-------------------------tatgtaaagactaaattgaat
s panTro4.chrUn_GL393505          301371 63 +   1195001 caccctctttgtttttagtttttctgttataggagttttgtc-------------------------tatgtaaagactaaattgaat
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58821950 63 + 158137892 caccctctttgttttcagtttttctgttataggagttttgtc-------------------------tatgtaaagactaaattgaat
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5825147 63 +  72422247 caccatctatgttttcagtttttctgttataggggttttgtc-------------------------tatgtaaagactaaattgaat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545003 58 + 121039945 caccctcttta-----agtttttctgttataggagttttgtc-------------------------tatgtaaagactaaattgaat
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145884967 63 - 170124641 caccctctttgttttaagtttttcttttataggagttttgtc-------------------------tatgtaaagactaaattgaat
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147875330 63 - 171882078 caccctctttgttttaagtttttcttttataggagttttgtc-------------------------tatgtaaagactaaattgaat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140802330 88 - 162156779 CACCCtctttgttttaagtttttctgtTATAGGAGTTTTGTCTATGTAAAGATTAAATTGAATTGTGTATGTAAAGACTAAATTGAAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36190539 63 +  58131712 caccctctttgttttaagtttttctgttataggagttttgtc-------------------------tatgtaaagactaaattgaat
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107993265 52 - 132174527 catcctccttaggt----tttttctgatatagcagttttgtc-------------------------tatgtaaagactaa-------
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26810111 29 -  40214260 -------------------ttttcaatttttgaacttatgtg-------------------------catata---------------
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9129109 1478 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58115478 4299 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=1459367.000000
s hg38.chr14_KI270725v1_random    160431 376 +    172810 tgtctatgtA-AAGACT---AAATTGGAAACAAAATAACAGGAAGAAGGAATTTATGCATAATCTTCAAATCAT--GAGGAGTAAAATTCATACAGGACCTACCGCTTAAAGAGTTTCATAGTG-GTTACCAGTAGTCATTTTGTGATG-TTTATCGATGTGATTCTTGAATGTAAAAAGGACTACATATAA-GATTTC-ATATTCTGAATTAATGTGCAGCATATTATGTT-AAA-TTGTTAACCAATTTAAAaaatttttgagtttaaattagaaatcttgttgttctatttataaatctagtacattaaaaa-ttatttttaagggggactttgattaatgtttg-gtccatttacaacttagttaattaaactcccttaaagattt
s panTro4.chrUn_GL393505          301434 375 +   1195001 tgtgTATGTA-AAGACT---AAATTGGAAACAAAATAAGAAGAAGAAGGAATTTATGCATAATCTTCAAATCAT--GAGGAGCAAAATTCATACAAGACCTATGGCTTAAAGAGTTTCATAGTG-GTTACCAGTGGGCATTTTGTGATG-TTTATCAATGTGATT-TTGAATGTAAAAAGGACTACTTTTTA-GGTTTC-ATACACTGAATTAATGTGCAGCATATTATGTT-AAA-TTGTTAACCAATTTAAAaaatttttgagtttaaattagaaatcttattgttctatttataaatctagtacattaaaaa-ttatttttaagggggactttgattaatgtttg-gtccatttacaacttagttaattaaactcccttaaagattt
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58822013 376 + 158137892 tgtctatgtA-AAGACT---ACATTGGAAACAAAATAACAAGAAGAAGGAATTTATGCATAATCTTCAAGTCAT--GAGGAGTAAAATTTATACAGGACCTATCGCTTAAAGAGTTTCATAGTG-GTTACcagtgggcattttgtgatg-tttatcaatgtgattcttgaatgtaaaaaggactacttataa-gatttc-atattctgaattaatgtgcagcatattatgtt-aaa-ttgttaaccaattcaaaaaagttttgagtttaaattagaaatcttatttttctatttataaatctagtacattaaaaa-ttatttttaagggggactttgattaatgtttg-gtccatttacaacttagttaattaaactccgttaaagattt
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5825210 375 +  72422247 tgtctatgtA-AAGACT---AAATTGGAAACCAAATAACAAGAAGAAGGAATTTATGCATAATCTTCAAATCAT--GAGGAGTAAAATTCATACAGGACCTATCGCTTAAAGAGTTTCATAGTG-GTTACCAGTGGGCATTTTGTGATG-TTTATCAATGTGATTCTTGAATGTAAAAAGGACTACTTATAA-GATTTC-ATATTCTGAATTAATGTGCAGCATATTATGTT-AAA-TTGTTAACCAATTTAAAAATTTTTTGAGTTTAAATTAGAAATCTTATTGTTCTATTTATAAATCTAGTACATTAAAAA-TTATTTTTAA-GGAGACTTTGATTAATGTTTG-GTCCATTTACAACTTAGTTAATTAAACTCCCTTAAAGATTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545061 376 + 121039945 tgtctatgtA-AAGACT---AAATTGGAAACAAAATAACAAGAAGAAGGAATTTATGCATAATCTTCAAATCAT--GAGGAGTAAAATTCATACAAGACCTATCGCTTAAAGAGTTTCATAGTG-GTTACcagtgggcattttgtgatg-tttatcaatgtgattcttgaatgtaaaaaggactatttataa-gatttc-gtattttgaattaatgtgcagcatattatgtcaaaa-tttttaaccaatttaaaaa-tttttgagtttaaattaaaaatcttattgttctatttataaatctagtacatttaaaa-ttatttttaagggggac-ttgattaatgtttgcttccatttacgacttagttaattaaactcccttaaagattt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885030 364 - 170124641 tgtgTATGTA-AAGACT---AAATTGGAAAGAAAATAACAGGAACAAGAAATTAATGCATAATCTTCAAATCAT--GAGGAGTAAAATTCATACAGAACCTGTTGCTTAAAGAGTTTCATAGCG-GTTATCAGCGGGCATTTTGTGATG-TTCATTAGTGTGATTCTTGAATGTAAAAAGCACTATTTACAA-GATTTC-ATATTTTGAATTA--------------ATGTT-AAATTTTTTAACCAATATTttaaaattttgagtttaaattagaaatcttattgttctatttataaatctagcacatttaaaa-ttatttttaagggggactttgaataatgcttgcttccatttacaacttagttaattaaactcccttaaagattt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147875393 364 - 171882078 tgtgTATGTA-AAGACT---AAATTGGAAAGAAAATAACAGGAACAAGAAATTAATGCATAATCTTCAAATCAT--GAGGAGTAAAATTCATACAGAACCTGTTGCTTAAAGAGTTTCATAGCG-GTtatcagcgggcattttgtgatg-ttcattagtgtgattcttgaatgtaaaaagcactatttacaa-gatttc-atattttgaatta--------------atgtt-aaattttttaaccaatattttaaaattttgagtttaaattagaaatcttattgttctatttataaatctagcacatttaaaa-ttatttttaagggggactttgaataatgtttgcttccatttacaacttagttaattaaactcccttaaagattt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140802418 378 - 162156779 TGTGTATGTA-AAGact---aaattggaaagaaaataacaggAACAAGAAATTAATGCATAATCTTCAAATCAT--GAGGagtaaaattcatacagaacctaTTGCTTAGAGAGTTTCATAGCG-GTTATCAGCGGGCATTTTGTGATG-TTCATCAGTGTGATTCTTGAATGTAAAAAGGACTATTTACAA-GATTTC-ATATTTTGAATTAATGTGCAGCATatcatgtt-aaattttttaaccaatgttttaaaattttgagtttaAATTAGAAATCTTATTGTTCTATTTATAAATCTAGcacattcaaaa-ttatttttaaggggGACTTTGAATAATGTTTGCTTCCATTTACAACTTAGTTAATTAAACTCCCTTAAAGATTT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36190602 366 +  58131712 tgtgTATGTA-AAGAAT---AAATTGGAAACAAAATAACAGGAAGAAGAAATTAATGCATAATCTTCAAATCAT--GAGGAGTAAAATTCATACAGAACCTATTGCTTAAAGAGTTTCATAGCG-GTTATCAGCGGGCATTTTGTGAT---------GTgtgattcttgaatgtaaaaaggactatttacaa-gatttc-atattttgaattaatgtgcagcatatcatgtt-aaattttttaaccaatgttttaaaattttgagtttaaattagaaatcttattgttctatttataaatctagcacatttaaaa-ttatttttaaggggggctttgattaatgtttgcttccatttacaac----ttaattaaactcccttgaagattt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107993317 358 - 132174527 ------------------------TGAAAACAAAATAAGAAGAAGAAAGAATTGATACATGATCTTCAAATCATTAGAGGAGTAAAATTCATACAAGATCAATTGCTTACAGAGTTTCATGGCA-GTTACCAGTGGGCATTTTGTGAT--TTTTTCAGTGTGATTCTTGAATGTAAAAAGGACTATGTATAA-GGTTTC-ATATTTTAAATTAATGTGAAGCACATTATGTT-AAC-TTTTTAACCAACCATTCAAAGTTTTGTGTTTAAATTAGAAATCTTATTGTTCTATTTATAAATCTAGTACATTTAAAA-TTATTTTTAAGGGGAACTTTGATTAATGTTTGCTTCCATTTACAACTTAGTTAATTAAACTCCCTTAAAGATTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58119777 315 - 182113224 tgtccatgtatgaaactttaaaattacaaatgaa--aATAAAAAGAAAAGATTTGTG-AT-ATTTTTTCATTAT--GGAACATAAATGCCATGCATGAACTGTGGCTTATGGC-TCTCACAGCATGATATCAGTGAGCATTGTAAGGTG-CCTTTC-ATCTGACTCTTGGATGTCAAAAG-ACTATTTACAA-----------------------------------------Aaa-gtttta-------------------gattttaaattaaaaatgtctttgtcttgtttgtatatct--cacatttaaaa--taatcctaaggaggactttgattaatgtttgtctccatttacaacttagttaattaaactcccttaaagattt
i mm10.chr2                    I 4299 C 0
s canFam3.chr30                 26810140 359 -  40214260 ----------------t---aacatcttaaaaaaataGCAAGAAGAAAGAAATGATGCATGATCTTCAGATTAT--AGAGAGTAAAATTTCTACAGGACCTATGGCTCAAAGTGTTTTATAGCA-ACTGTAAATGGGCATTTTGGGGTGTTTTCTTACTATTTCTTTTTAGTATAAAAAGGATTATTGACAATGATTTCAATATTTTACATTAATGTGCAGCATATTAAAAT-AAGAACTTAAAACACTT-----AAATTTGGAGTTTAAAAATGAAAACttatt---ctagttataaaattcatatatttaaaaataatttttaagggggatttttgtaaatgtttggttccgtttccaatttagttaataaaaatcacttaaaGCTTT
i canFam3.chr30                C 0 I 1369
e panPan1.JH650621               9129109 1478 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=891525.000000
s hg38.chr14_KI270725v1_random    160807 277 +    172810 taaactacatttacaaatttaatatgttgaattatctttatgaacattttaattatcggactaaca------------------------------aataaagcctt-cagagtacttaaacaacccttatagagctaataaattaaactcacaaaa------------------------------------------------------------tcatgaatgttaaattatcttcaatg-ttaaaccactactggcaactcggtaaaaccg----cttattatttcaactaaaaaacaaccccaatatctaaaatattctgttacacattgaaaattggaatgtaaaatgctaatct----atATTTAAATAC
s panTro4.chrUn_GL393505          301809 275 +   1195001 taaactacatttataaatttaatatgttgaattatctttgtgaagattttagttatcagactaaca------------------------------aataaagcctt-cagagtacttaaacaacccttatagagctaataaattaaactcacaaaa------------------------------------------------------------tcatgaatcttaaattatcttcaatg-ttaaaccactactggcaactcggtaaaacca----cttataatttcaactaaaaa--aaccccaatatctaaaatattctgttacacatttaaaattggaatgtaaaatgctaatct----atatttaaatac
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58822389 276 + 158137892 taagctacatttataaatttaatatgttcaattatctttgtgaacattttaattatcggactaaca------------------------------aataaagcctt-cagagtacttaaacaacccttatagagctaataaattaaactcacaaaa------------------------------------------------------------tcatgaatcttaaattatcttcaatg-ttaaaccacttctgacaactcagtaaaaccg----cttataatttcaactaaaaaa-aaaaccaatatctaaaatactctgttacacattgaaaattggaatgtaaaatgctaatct----atatttaaatac
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5825585 271 +  72422247 CAAACTACATTTATA-----AATATGTTCAATGATCTTTGTGAACATTTTCATTATCAGACTAACA------------------------------ATTAAAGCCTT-CGGAGTACTTAAACAACCCTTATAGAGCTAATAAATTAAACTCACAAAA------------------------------------------------------------TCATGAATCTTAAATTATCTTCAATG-TTAAACCACTATTGGCAACTCGGTAAAACTG----CTTATAATTTCAACTAAAAAA-AAATCCAATATCTAAAATATTCTGTTACACATTTAAAATTGGAATGTAAAATGCTAATCt----atatttaaatac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545437 277 + 121039945 taaactacgtttataaatttaatatgttcaattatctttgtgaacattttaattatcggactaaca------------------------------aataaaaccttccagagtacttaaacaaccctcatagagctaataaattaaactcacaaaa------------------------------------------------------------tcatgaatcttaaattttcttaaatg-ttaaaccactactggcaactcggtaaaaccg----cttataattgcaactcaaaaa-aaaaaaaatatctaaattattctgttacacatttaaaattggaatgtaaaatgctaatct----atATTTAAATAC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885394 270 - 170124641 t-aactacatttataaatttaatatgttcaattatctttgtgaacattttaattatcggactaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------------------------nnnnnnnnnnctcggtaaaaccg----cttataatttcaactaaaag--aaaaccagtatctaaaatattctgttatacatttaaaattggaatgtaaaatgcaaatct----atagttaaatac
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147875757 275 - 171882078 t-aactacatttataaatttaatatgttcaattatctttgtgaacattttaattaccggactaaca------------------------------aataaaaccttccagagtacttaaacaacccttatagagctaataaattaaacttacaaaa------------------------------------------------------------tcatgaatcttaaattatcttgaagg-ttaaaccactgctggcaactcggtaaaaccg----cttataatttcaactaaaag--aaaaccagtatctaaaatattctgttatacatttaaaattggaatgtaaaatgcaaatct----atagttaaatac
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140802796 279 - 162156779 T-AactacatttataaatttaatatgttCAATTATCTTTGTGAACATTTTAATTATCGGACTAACA------------------------------AATAAAACCTTCCAGAGTACTTAAACAACCCTTATAGAGCTAATAAATTAAACTTACAGAA------------------------------------------------------------TCATGAATCTTAAATTATCTTGGAGG-TTAAACCACTGCTGGCAACTCGGTAAAACCG----CTTATAATTTCAACTAAAAG--AAAACCAGTATCTAAAATATTctgttatacatttaaaattggaatgtaaaatgcaaatctataaatagttaaatac
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36190968 277 +  58131712 taaactacatttataaatttaatatgttcaattatctttgtgaacattttaattatcagactaaca----------------------------------aaaccttccaaagtacttaaacaacccttatagagctaataaattaaacttacaaaa------------------------------------------------------------tcatgaatcttaaattatctcacaggtttaaactactgctggcaactcggtaaaaccg----cttataatttcaactaaaag--aaaaccagtatttaaaatattctgttatgcatttaaagttggaatgtaaaatgctaatctataaatatttaaatac
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107993675 271 - 132174527 TAAACTACATTTATAAATTTAATATGTTCAATTATCTTTGTGAACATTTTAATTATCAGACTAACA------------------------------AACAAAACCTTCCAGAGTACTT----AACCCTTATAGAGCTAATAAATTGAACTCACAAAA------------------------------------------------------------CCATGAATCTTACATTATCTTAAATG-TTAAACCACTACTGGCAACTCAGTAAAACCA----CTTAAAATTTCAACTAAAAA--AAAA-----ATCTAAAATATTCTGTTACACATTTCAAATTAGAATGTAAAATGCTAATCTATAAATATTTAAATAC
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58120092 265 - 182113224 caaacttcatttataaatttaatatgttcaattatctttgtgaacactctaattatcctacaaaca----------------------------------aaacattacagaatatgaaagcaatccatataaagctactaagttaaacttataaaa------------------------------------------------------------ccatgaatctctagtttccttaaact-gtaaatcactattggcaacttagcaaaactggagacttttcatctc-----------aaaaacagatgcttgaatattcacctgtgcatttaaaacagga--gtcagatgttaatct----atAAATGCATCC
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9129109 1478 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26810499 1369 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=14451.000000
s hg38.chr14_KI270725v1_random    161084 5 +    172810 TAATA
s panTro4.chrUn_GL393505          302084 5 +   1195001 taata
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9130587 5 -  12672142 taata
i panPan1.JH650621             I 1478 I 677
s gorGor3.chr7                  58822665 5 + 158137892 taata
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5825856 5 +  72422247 taata
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545714 5 + 121039945 TAATA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885664 5 - 170124641 aaata
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147876032 5 - 171882078 aaata
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140803075 5 - 162156779 aaata
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36191245 5 +  58131712 aaata
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107993946 5 - 132174527 TTATG
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58120357 3 - 182113224 --TTG
i mm10.chr2                    C 0 C 0
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26810499 1369 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=70059.000000
s hg38.chr14_KI270725v1_random    161089 19 +    172810 CAATTATAAATAAATATCA
s panTro4.chrUn_GL393505          302089 19 +   1195001 caattataaataaatatca
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58822670 19 + 158137892 caattataaataaatatct
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5825861 19 +  72422247 caattataaataaatatCA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545719 19 + 121039945 CAATTATGAATAAATATCA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885669 19 - 170124641 caattatgaataaatatca
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147876037 19 - 171882078 caattatgaataaatatca
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140803080 19 - 162156779 caattatgaataaatatcA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36191250 19 +  58131712 caattatgaataaatatca
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107993951 19 - 132174527 CAATTATGCATAAATATAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58120360 19 - 182113224 TTATCTCTGGTACATGTTA
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9130592 677 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26810499 1369 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=323622.000000
s hg38.chr14_KI270725v1_random    161108 75 +    172810 CAT-------CTCTAAAGTATAAATATTATAGTTTTCATATACTT------CATCATCTCTAA---ACTTTTTTTCAA-----TGTTTTCCTGGGA
s panTro4.chrUn_GL393505          302108 75 +   1195001 cgt-------ctctaaagtataaatattatagttttcctatactt------catcatctctaa---actttttttcaa-----tgttttcctggga
i panTro4.chrUn_GL393505       C 0 I 284
s gorGor3.chr7                  58822689 75 + 158137892 cat-------ctctaaagtataaatattatagtttttatatactt------catcatctctaa---actttttttcaa-----tgttttcctggga
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5825880 75 +  72422247 CAT-------CTCTAAAGTATAAATATTATAGCTTTTATATACTT------CATCATCTCTAA---ACTTTTTTTCAA-----TGTTTTCCTGGGA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545738 75 + 121039945 CAT-------CTCTAAAGTATAAATATTATAGTTTTCATATACTT------CATCATCTCTAA---ACTTTTTTTCAA-----TGTTTCCCTGGGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885688 75 - 170124641 cat-------ctctaaagtataaatgttatagttttcatatactt------catcatctctaa---actttttttcaa-----ggttttcctggga
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147876056 75 - 171882078 cat-------ctctaaagtataaatgttatagttttcatatactt------catcatctctaa---actttttttcaa-----ggttttcctggga
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140803099 75 - 162156779 CAT-------CTCTAAAGTATAAATGTTATAGTTTTCATATACTT------CATCATCTCTaa---actttttttcaa-----ggttttcctggga
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36191269 75 +  58131712 cat-------ctctaaagtataaatgttatagttttcatagactt------catcatctctaa---actttttttcaa-----ggttttcctggga
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107993970 75 - 132174527 TAT-------CTCTAAAGTGTAAATATTATAGTTTTCATATACTT------CATGATTTCTAA---CCTTTTTTTTAA-----TATTTTCTTGGGA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58120379 83 - 182113224 GATCTAAGGGCTCTAAAATACAGACATCAT-GCTTTGACAGACTT------TATAACCTTTAGTATATTTCATTTCAA------GTTTCTTTAGTA
i mm10.chr2                    C 0 I 18
s canFam3.chr30                 26811868 86 -  40214260 CAT-------CTCTAAAATATGAATATTATAGTTTTTATAGTTTTTATTTACATCATCTCTGT---ACTTAAAAAAAAAAAAATGGTTTCCCAGGT
i canFam3.chr30                I 1369 C 0
e panPan1.JH650621               9130592 677 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=5005.000000
s hg38.chr14_KI270725v1_random    161183 1 +    172810 T
s panTro4.chrUn_GL393505          302467 1 +   1195001 t
i panTro4.chrUn_GL393505       I 284 C 0
s gorGor3.chr7                  58822764 1 + 158137892 t
i gorGor3.chr7                 C 0 I 2307
s ponAbe2.chrUn                  5825955 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545813 1 + 121039945 T
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885763 1 - 170124641 t
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147876131 1 - 171882078 t
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140803174 1 - 162156779 t
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36191344 1 +  58131712 t
i chlSab2.chr26                C 0 I 1
s calJac3.chr10                107994045 1 - 132174527 T
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26811954 1 -  40214260 T
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9130592 677 -  12672142 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58120462 18 - 182113224 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=486353.000000
s hg38.chr14_KI270725v1_random    161184 148 +    172810 --------------AAAAAAAATCATA-AAAACAATTACA-------------------TTC--------TCTTAAGCAAATGAGGTTATCACCTC-AG-----------TGAGTTGTGGCTACTTTTTCAGGTTGTTTACCTATCAGAGATTTTGACTGG-AAAATGAGATCTGGAGCTTCAGAT-ACTCAGGGTAATTGTTT
s panTro4.chrUn_GL393505          302468 148 +   1195001 --------------aAAAAAAATCATA-AAAACAATTACA-------------------TTC--------TCTTAAGCAAATGGGGTTATCACCTC-AG-----------TGAGTTGTGGCTACTTTTTCAGGTTGTTTACCTATCAGAGATTTTGACTGG-AAAATGAGATCTGGAGCCTCAGAT-ACTCAGGGTAATTGTTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5825956 148 +  72422247 --------------TAAAAAAATCATA-AAAACAATTACA-------------------TCC--------TCTTAAGCAAATGGGGTTATCACCTC-AG-----------TGAGTTGTGGCTACTTTTTCAGGTTGTTTAGCTGTCAGAGATTTTGATTGG-AAAATGAGATCTGGAGCTTCAGAT-ACTCAGGGTAATTGTTG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545814 147 + 121039945 ---------------AAAATAATCATA-AAAGCAATTACA-------------------TTC--------TCTTAAGCAAATGGGGTTATCAGCTC-AG-----------TGAGTTGTGGCTACTTTTTCAGGTTGTTTACCTATCAGAGACTTTGACTGG-AAAATGAGATCTGGAGCTTCAGAT-ACTCAGGGTAATTGTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885765 158 - 170124641 --------------aaaaaaAATCATA-AAAACAATTACA-------------------TTC--------TGTTAAGCAAATGGGGTTATCACCTC-AGAGAGTTGTGGTAGAGTTGTGGCTACTCTTTCAGATTGTTTACCTATCAGAGATTTTGACTGG-AAAATG-GATCTGGAGCTTCAGAT-ACTCAGGGTAATTGTTT
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147876133 147 - 171882078 --------------aaaaaaAATCATA-AAAACAATTACA-------------------TTC--------TGTTAAGCAAATGGGGTTATCACCTC-AG-----------AGAGTTGTGGCTACTCTTTCAGATTGTTTACCTATCAGAGATTTTGACTGG-AAAATG-GATCTGGAGCTTCAGAT-ACTCAGGGTAATTGTTT
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140803176 147 - 162156779 --------------aaaaaaaatcata-aaaacaattACA-------------------TTC--------TGTGAAGCAAATGGGGTTATCACCTC-AG-----------AGAGTTGTGGCTACTCTTTCAGATTGTTTACCTATCAGAGATTTTGACTGG-AAAATG-GATCTGGAGCTTCAGAT-ACTCAGGgtaattgttt
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36191346 148 +  58131712 --------------aaaaaaAATCATA-AAAACAATTACG-------------------TTC--------TCTTAAGCAAATGGGGTTATCACCTC-AG-----------AGAGTTGTGGCTACTTTTTCAGATTGTTTACCTATCAGAGATTTTGACTAG-AAAATG-GATCTGGACCTTCAGATAACTCAGGGTAATTGTTT
i chlSab2.chr26                I 1 C 0
s calJac3.chr10                107994046 145 - 132174527 ----------------AAAACCTCATA-AAAACAATTACG-------------------TTC--------TCTTACGCAAATG-GGTTATCACCCC-AG-----------TAAGTTGTGGTTACATTTTCAGGTTGTTTACCTATCGGAGATTTTGATTGG-AAAATGAGATCAGGAGCTTCAGAT-ACTCAGGGTAATTGTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58120480 171 - 182113224 --------------GGAAAATACCATGTAATGTAGTTACAGATATAAACTAAGAGTTTTTTCTTTAAAAATTTTAAACAAACACAGTTTTGACTCA-AG-----------TGCAATGTGCTTATTTCCTGAGGTTGCTT-CTGACTAGAAATTTTGAGTGGAAAAATGAGATCTAGAGTTGAAAAT-AT----AGTAATTCTT-
i mm10.chr2                    I 18 C 0
s canFam3.chr30                 26811955 162 -  40214260 AAAAAGAAGGAAAAAAAAGATGCCTTG-AAAATGATTGTG-------------------CTC--------TCTTAAGCAAATGAGGTTATCAGTCCAAG-----------TGAACTGTAGCTACTTTCTCAG-TTTTTTACTTGACATACATTTTGGTTGG-AAGAGGAGCTCTAGATCCACAGGT-ATTCAGGGTGATTTTTT
i canFam3.chr30                C 0 I 400
e panPan1.JH650621               9130592 677 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=40061.000000
s hg38.chr14_KI270725v1_random    161332 13 +    172810 GTTTTTCCCTCAT
s panTro4.chrUn_GL393505          302616 13 +   1195001 GTTTTTCCCTCAT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5826104 13 +  72422247 GTTTTTCCCTCAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545961 13 + 121039945 GCTTTTCCCTCAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885923 13 - 170124641 GTTTTTCCCTCAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147876280 13 - 171882078 GTTTTTCCCTCAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140803323 13 - 162156779 gtttttccctcat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36191494 13 +  58131712 GTTTTTCCCTCAT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107994191 13 - 132174527 GCTTTTCCCTCAT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58120651  4 - 182113224 ---------CTGT
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9130592 677 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26812117 400 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=371093.000000
s hg38.chr14_KI270725v1_random    161345 120 +    172810 TAATATGG-GAACAAATTCTAACATTGTAAAAGTTATGTTAATAGAGAT----TCCAAGCCCATGAACTCTAAGTGAAATGGCCATGCAATCCATGTTTTCTAGATCCATGTTGCCTA-TATCTTT
s panTro4.chrUn_GL393505          302629 120 +   1195001 TAATATGG-GAACAAGTTCTAACCTTGTAAAATTTATGTTAATAGAGAT----TCCAAGCCCATGAACTCTAAGTGAAATGGCCATGCAATCCATGTTTTCTAGATCCATGTTGCCTA-CATCTTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5826117 120 +  72422247 TAATATGG-GAACAAATTCTAACGTTGTAAAAGTTATGTTAATAGAGAT----TCCAAGCCCATGAACTCTAAGTGAAATGGCAATGCAATCCATGTTTTCTAGATCCATGTTGCCTA-CATCTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53545974 120 + 121039945 TAATATGG-GAACAAATTCTAACGTTGTAAAAGTTATGTTAATAGAGAT----TCCAAGCCCATGAACTCTAAGTGAGATGGCCATGCAATCCACGTTTTCTAGATCCATGTTGCCTA-TTTCTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145885936 121 - 170124641 TAATATGG-GAACAAGTTCTAACGTCATAAAAGTTATGTTAATAGAGAT----CCCAAGCCTGTGAACTCTAAGTGAGATGGCCATGCAATTCATATTTTCCAGATCCATGTTGTCTCTTATCTTT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147876293 121 - 171882078 TAATATGG-GAACAAGTTCTAACGTCATAAAAGTTATGTTAATAGAGAT----CCCAAGCCTGTGAACTCTAAGTGAGATGGCCATGCAATTCATATTTTCCAGATCCATGTTGTCTCTTATCTTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140803336 119 - 162156779 TAATATGG-GAACAAGTTCTAACGTCGTAAAAGTTCTGTTAATAGAGAT----CCCAAGCCTGTGAACTCTAAGTGAGATGGCCATGCAATTCATATTTTCCAGAT-CATGTTGTCTC-CATCTTT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36191507 120 +  58131712 TAATATGG-GAACAAGTTCTAACGTCGTAAAAGTTACGCTAATAGAGAT----CCCAAGCCCGTGAACTCTAAGTGAGATGGCCATGCAATTCATATTTTCCAGATCCATGTTGTCTC-TATCTTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107994204 120 - 132174527 TAATATGG-GAACAAATTCTAACGTTGTAAAAGTTACATTAATAGAGAT----TCCAAGTCCATGAACTCTAAATGAAGCAGCCATGCAATCCATGTTTGCTAGATCCGTGTTGCCTA-TATCTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58120655  97 - 182113224 TAACATAATGGACAGACTGAATTCTTGT---AGTTAGTCTAAGA---AT----TC--ACTTCATGAACTCAGAATGAGTTAG-AATG---------------ATGTCCATGTTCCTCA-TGTCTTC
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26812517 115 -  40214260 TAATAGAT-GGACTAGTTGGCACTTTTATAGAGTTATGATAATAAATATAAACTCCCAGTCCATGAACTCTAAATGAAATAGGTGTGAAATTCATATT---------CACCTTACTTA-TACCTTT
i canFam3.chr30                I 400 I 3275
e panPan1.JH650621               9130592 677 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=728292.000000
s hg38.chr14_KI270725v1_random    161465 236 +    172810 AGCCTGATTTTAATATCTAACCTCCCTACTCTGATTATTTAGGTACTAGATTAAATTCAAAAATCTATTTACTGTATGATTCTTGACAGAGTTCTTTTTATATTTTTCATACCTGGTGA--AGTCATAACTTTTCTAGATATTT-----------AAATGGCATACACA-------TGTATTATTTAA-------------TCTCATGTATATATCTGATTCTGTGGTCACATTTCCCAAAGCCAGATAAATGACTGTAG----CCAGACAGA
s panTro4.chrUn_GL393505          302749 236 +   1195001 AGCCTGATTTTAATATCTAACCTCCCTACTCTGATTGTTTAGGTACTAGATTAAATTCAAAAATCTATTTACTGTATGATTCTTGACAAAGTTCTTTTTATATTCTTCATACCTGGTGA--AGTCATAACTTTTCTAGATATTT-----------AAATGACATACACA-------TGTATTATTTAA-------------TCTCATTTGTATACCTGATTCTGTGGTCACATTTCCCAAGGCCAGATAAATGACTGTAG----CCAGACAGA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5826237 236 +  72422247 AGCCTGATTTTAATATCTAACCTCCCTACTCTGATTGTTTAGGTAATAGATTAAATTCAAAAATCTATTTACTCTATGATTCTTGATAGAGTTCTTTTTATATTCTTCATATCTGGTAA--AGTCATAACTTTTCTAGATATTT-----------AAATGACATACACA-------TTTATTATTTGA-------------TCTCATGTGTATATCTGATTCTGTGGTCACATTTCCCAAGGCCAGATAAATGACTGTAG----CCAGCCAGA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53546094 236 + 121039945 AGCCTGATTTTAATATCTAACCTCCCTACTCTGATTGTTTAGGTACTACATTAAATTCAAAAATCTATTTACTGTATGATTCTTGACAGAGTTCTTTTTATATTCTTCATACCTGGTGA--AGTCATAACTTTTCTAGATATTT-----------AGATGACATACAAA-------TTTATTATTTAA-------------TCTCATGTGTATATCTGATTCTGTGGTCACATTTCCCAAGGCCAGATAAATGACTGTAG----CCAGACAGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145886057 236 - 170124641 AGCCTGATTTTAATATCTAACCTCCCTACTTTGATTGTTTAGGTACTAGATTAAATTCAAAAATCTATTTACTGTATGATTCTTGACAGAGTTCTTTTTATATTCTTCTTACCTGGTGA--AATTATAACTTTTCTAGATATTT-----------AAATGACATGCAAA-------TTTACTATGTAA-------------TTTCATGTGTATATCTGATTCTGTGGTCACATTTCCCAAGGCCAGATAAATGACTGTAG----CCAGACAGA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147876414 236 - 171882078 AGCCTGATTTTAATATCTAACCTCCCTACTTTGATTGTTTAGGTACTAGATTAAATTCAAAAATCTATTTACTGTATGATTCTTGACAGAGTTCTTTTTATATTCTTCTTACCTGGTGA--AATTATAACTTTTCTAGATATTT-----------AAATGACATGCAAA-------TTTACTATGTAA-------------TTTCATGTGTATATCTGATTCTGTGGTCACATTTCCCAAGGCCAGATAAATGACTGTAG----CCAGACAGA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140803455 236 - 162156779 AGCCTGATTTTAATATCTAACCTCCCTACTTTGATTGTTTAGGTACTAGATTAAATTCAAAAATCTATTTACTGTATGATTCTTGacagagttctttttatattcttcttACCTGGTGA--AATTATAACTTTTCTAGATATTT-----------AAATGACATGCAAA-------TTTACTATGTAA-------------TGTCATGTGTATATCTGATTCTGTGGTCACATTTCCCAAGGCCAGATAAATGACTGTAG----CCAGACAGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36191627 236 +  58131712 AGCCTGGTTTTAATATCTAATCTCCCTACTCTGATTATTTAGGTACTCGATTAAATTCAAAAATCCATTTACTGTATGATTCTTGACAGAGTTCTTTTTATATTCTTCATACCTGGTAA--GATCATAACTTTTCTAGATATTT-----------AAATGACATACAAA-------TTTACTATGTAA-------------TCTCATGTGTGTATCTGATTCTGTGGTCACATTTCCCAAGGCCAGACAAATGACTGTAG----CAGGACAGA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107994324 235 - 132174527 AGCCTGATTTTAGTATCTAACCTCCCTACCCTGATGGTTTAGGTACTAGATTAGATTTGAAAATGTATTTATTATATGATTCTTGCCAGAGTTCTTTTTATATTCTTCATACCTGGTGA--AGTCATAACTTTGTTAGATATTT-----------AAATAACATACAAA-------TTGATTATCT-A-------------TCTCATGTCTCTATCTGGTTCTGTGGTTACATTTCCCAAGGCCAGATAAATGACTGTAG----CCAGACAGA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58120752 251 - 182113224 AGGCTGATGTTCATATCTCACCATTCTCCT----------------TGGGTTGGGTTAAAATATGTATTTGTTCTCTCAGCCTCAACATGGCCCTTTTAATGATCTC----TCTGATGAGGAGTCAGAACATCTATGAATATGTGCATATGTATAAAGTGATATACACAGGGATCCTTCACCTTATAGATCCTTCACCTCTTCTATTGTCTCTACCC-ACACTGTGGCCATGGTGCACAAGG-CAGAATATTGGCTTTAGTCTTCCAAACAGA
i mm10.chr2                    C 0 I 55
e panPan1.JH650621               9130592 677 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26812632 3275 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=200135.000000
s hg38.chr14_KI270725v1_random    161701 67 +    172810 TGTAGGGCTAGGTGTAAAAGGAGATATTCCCACAGATTATATAGTTGCtgtgtagagaaaactctct
s panTro4.chrUn_GL393505          302985 67 +   1195001 TGTAGGGCTAGGTGTAAAAAGAGATATTCCCACAGATTATATAGTTGCtgtgtagagaaaactctct
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5826473 67 +  72422247 TGTAAGGCTAGGTGTAAAAAGAGATATTCCCACAGATTATATACTTGCtgtgtagagaaaactctct
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53546330 65 + 121039945 TGTAGGGCTAGGTGTAAAAAGAGATGTTCCCACAGATTATATAGTTGCtgtgtagagaaaactct--
i nomLeu3.chr6                 C 0 I 1
s rheMac3.chr7                 145886293 65 - 170124641 TGTAGGGCTAGGTGTAAAAAGAGATGTTCCCACAGATTATGTAGTTGCtgtgtagagaaaactct--
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147876650 65 - 171882078 TGTAGGGCTAGGTGTAAAAAGAGATGTTCCCACAGATTATGTAGTTGCtgtgtagagaaaactct--
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140803691 65 - 162156779 TGTAGGGCTAGGTGTAAAAAGAGATGTTCCCACAGATTATGTAGTTGCTGTGTAGAGAAAACTCT--
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36191863 65 +  58131712 TGTAGGGCTAGGTGTAAAAAGAGATGTTCCCACAGATTATGTAGTTGCtgtgtagagaaaactct--
i chlSab2.chr26                C 0 I 1
s calJac3.chr10                107994559 67 - 132174527 TGTAGGGCTAGGTGTAGAAAGAGATGTTCCCCCAGATTATATAGTTGCtgtgtagagaaaacgctct
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9130592 677 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121003 55 - 182113224 I
e canFam3.chr30                 26812632 3275 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=1000.000000
s hg38.chr14_KI270725v1_random    161768 1 +    172810 c
s panTro4.chrUn_GL393505          303052 1 +   1195001 c
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9131269 1 -  12672142 C
i panPan1.JH650621             I 677 I 677
s ponAbe2.chrUn                  5826540 1 +  72422247 c
i ponAbe2.chrUn                C 0 C 0
s calJac3.chr10                107994626 1 - 132174527 c
i calJac3.chr10                C 0 C 0
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121003 55 - 182113224 I
e canFam3.chr30                 26812632 3275 -  40214260 I
e rheMac3.chr7                 145886358 1 - 170124641 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I
e chlSab2.chr26                 36191928 1 +  58131712 I
e papAnu2.chr7                 140803756 1 - 162156779 I
e macFas5.chr7                 147876715 1 - 171882078 I
e nomLeu3.chr6                  53546395 1 + 121039945 I

a score=2009707.000000
s hg38.chr14_KI270725v1_random    161769 683 +    172810 --tgtttttcctctagtctcacgccacaaagatcaatcagcaacagaaaagacttctgtgaccaaatgtgtggg-ttttttcctccatacatacaccaaggagtggacaccagctgagtgtcctctaattcagttctgacactacactatctacctggagatagtgtcaggtctcacatg--------tcagtccccaagactgcccaccctcaaactaccagccagaagtccaggcctctgaacttctgacctgctggcttcgagttggc-ttctcaggaccccctctttgtgtttgattaatttgttggagtggctcacggaactcagggaaacacttacatttcctggtgttttataaaggacattgcaaaggatatagatgaag-gacacttagagcaattca-taggggaagggagcagagcttccatgccatccctgggtgggccaccctacaggaacatccatgtgttcaactacccagaagctcactgaacactgtcctcctggatttttatggaagtttcatGATATcagcattcctccctccagggtatagggtgggactctctcttgagatggtcttaagacccacaaccagaaaggcaggaacataaaaatgaaaaaaggccatgagaaggtgagaggcctgctcctgaggcctaatacacccaatattataacaaaagactgta
s panTro4.chrUn_GL393505          303053 684 +   1195001 --tgtttttcctttagtctcacaccacaaatatcaatcagcaacacagaagacttctgtgactaaatgtgtcgg-tttattcctccatacatacaccaaggagcagacaccagctgagtgtcctctaattcagttctgacactacactgtgtacctggagatagtgtcagatctcacagg--------tcagtccccaagactgcccaccctcaatctaccagccacaagtccaggactctgaacttctgacctattggcttcaagttggg-ttctcatgaccccttctttgggtttgattaatttgttggagtggctcacagaactcagggaaacacttacatttcctggtgtattataaaggatattgcaaaggatatagatgaagagacacttagagcaatgca-tgggggaagggagctgagcttccatgccatccctgggttggccaccctccaggaacatccatgtgttcaactacccagaaactcattgaaccctgtcctcctggattttcatggaagtttcatgatatcagcattcctccctccagggtatagggtgggactctctgctgagatggtcttaagacccacaaccagaaaggcaggaacataaaaatgaaaaaaagccatgaggaggtgagaggcctgctcctgaggcctaacacacccaatattataacaaaagactgta
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5826541 684 +  72422247 --tgtttttcctctagtctcacaccacaaagatcaatcagcaacacagaagacttctgtgaccaaatgtgtggg-tttcttcctccatacgtacaccaagaagcagacaccagctgagtgtccactaattcagttctgacactaccctgtctacctggagatagtgtcagatcttacagg--------tcagtccccaagactgcccaccctcaacctaccagccacaagtccaggcctctgaacttctgacatactggcttcaagttggg-ttctcatgaccccctctttgggtttgattaatttgttggagtggctcacagaactcagggaaacacttacatttcctggtgtattataaaggatattgcaaaggatatagatgacgagacacttagagcaatgca-tggggaaagggagcagagcttccatgccatccctgggtgggccaccctccaggaacatccatgtgttcaactacccagaagctcactgaaccctgtcctcctagattttcatggaagtttcatgatatcagcattcctccctccagggtatagagtgggactctctcctgagatggtcttaagatccacaaccagaaaggcaggaacataaaaatgaaaacaggccatgagaaggtgagaggcctgctcctgaggcctaacacacccaatattataacaaaagactgta
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53546396 684 + 121039945 --tgtttttcctctagtctcacaccacaaagatcaatcagcaacacagaagacttctgtgaccaaatgtgtggg-ttttttcctccatacatacaccaaggagcagacaccagctgagtgtcctctaattcagttctgacactacactgtctacctggagatagtgtcacatctcacagg--------tcagtccccaagactgcccaccctcaacctaccagccacaagtccaggcctctgaacttctgacctactggcttcaagttgggattctcatgacaccctctttg-gtttgattaatttgttggagtagcccacagaactcagggaaacacttacatttactgatgtattataaaggatattgcaaaggatatagacgaagagacacttagagctatgca-tggaggaagggagcagagcttccatgccatccctgggcgggccaccctctaggaacatccatgtgttcagctatccagaagcgcactgaaccctgtcctcctggattttcatggaagtttcatgatatgcgcattcctccctccagggtatagggtgggactctctcctgagatggtcttaagaccggcaatcagaaaggcaggaacataaaaatgaaaaaaggccatgagaaggtgagaggcctgctcctgaggcctgacacacctaatattaaaacaaaagactgta
i nomLeu3.chr6                 I 1 C 0
s rheMac3.chr7                 145886359 686 - 170124641 --tgtttttcctctagtctcacaccacaaagattaatcagcaacacagaagacttctgtgaccaaatgtgtagg-ttttttcttccatacatacaccaagcagtagacaccagctgagtgtcctctaattcagttctgacacta-accgtctacctggagatag------atctcacaggttgaaggctcagttcccaagactgcccaccctcaacctaccagccacaagtccaggcctctgaacttctgacctactggcttcaagttggggttctcatgaccccctctttggatttgattaatttgttggagtggctcacagaactcagagaaagaattacatttactggtgtattataaaggatattgcaaaggatatagatgaagagacacttagagcaatgcg-tggggaaagggagcagagtttccatgccatccctgggcgggccaccctcccagaacatccatgtgttcggctatccagaatctcatggaaccctgtcctcctggatattcatggaagtttcatGATATcagcattcctccctccagagtatagggtgggactctctcctgagatagtcttaagacccacaaccagaaaggcaggaacataaaaatgaaaaaaggccatgagaagatgaggggtctgctcctgaggcctaacacacccaatattataacaaaagactgta
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147876716 687 - 171882078 --tgtttttcctctagtctcacaccacaaagattaatcagcaacacagaagacttctgtgaccaaatgtgtagg-ttttttcttccatacatacaccaagcagtagacaccagctgagtgtcctctaattcagttctgacactacaccgtctacctggagatag------atctcacaggttgaaggctcagttcccaagactgcccaccctcaacctaccagccacaagtccaggcctctgaacttctgacctactggcttcaagttggggttctcatgaccccctctttggatttgattaatttgttggagtggctcacagaactcagagaaacacttacatttactggtgtattataaaggatattgcaaaggatatagatgaagagacacttagagcaatgcg-tggggaaagggagcagagtttccatgccatccctgggcgggccaccctcccagaacatccatgtgttcggctatccagaatctcatggtaccctgtcctcctggatattcatggaagtttcatGATATcagcattcctccctccagggtatagggtgggactctctcctgagatggtcttaagacccacaaccagaaaggcaggaacataaaaatgaaaaaaggccatgagaagatgaggggcctgctcctgaggcctaacacacccaatattataacaaaagactgta
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140803757 686 - 162156779 --TGTTTTTCCTCTAGTCTCACACTACAAAGATTAAtcagcaacacagaagacttctgtgaccaaatgtgtagG-TTTTTTCTTCCATACATACACCAAGCAGTAGACACCAGCTGAgtgtcctctaattcagttctgacactacACCGTCTACCTGGAGATAG------ATCTCACAGGTTGAAGGCTCAGTTCCCAAGACTGCCCACCCTCAACCTACCAGCCACAAGTCCAGGCCTCTGAACTTCTGACCTactggcttcaagttggggttctcATGGCCCCCTCTTTGGATTTGATTAATTTGttggagtggctcacagaactcagagaaaccCTTACATTTACTGGtgtattataaaggatattgcaaaggataTAGATGAAGAGACACTTAGAGCAATGCG-TGGGGAAAGGGAGCAGAGCTTCCATGCCATCCCTGGGCGGGCCACCCTCCCAGAACatccatgtgttcagctatccagaatCTCACTGAACCCTGTCCTCCTGGATATTCATGGAAGTTTCATGATATCAGCATTCCTCCCTCCAGGGTATAGGGTGGGACTCTCTCCTGAGATGGTCTTAAGACCCACAACCAGAAAGGCaggaacataaaaatg-aaaaaggccaTGGGAAGATGAGGGGCCTGCTCCTGAGGCCTAACACACCCaatattataacaaaagactgta
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36191929 687 +  58131712 --tgttttgcctctagtctcacaccacaaagatcaatcagcaacacagaagacttctgtgaccaaatgtgtagg-ttttttcttccatacatacaccaagcagcagacaccagctgagcgtcctctaattcagttctgaccctacaccatctacctggagatag------atctcacaggttgaaggctcagttcccaagactgcccaccctcaacctaccagccacaagtccaggcctctgaacttctgatctactggcttcaagttggggttctcatgaccccgtctttggatttgattaatttgttggagtggctcacagaactcagagaaacacttacatttactggtgtattataaaggatattgcaaaggatatagatgaagagacacttagagcaatgcg-tggggaaagggagcagagcttccatgccatccctgggcgggccaccctcccggaacatccatgtgttcggctatccagaatctcattgaaccctgccctcctgggttttcatggaagtttcatGATATcagcattcctccctccagggtatagggtgggactctctcctgagatggtcttaagacccacaaccagaaaggcaggaacataaaaatgaaaaaaggccatgagaagatgaggggcctgctcctgaggcctaacacacccgatattataacaaaagactgta
i chlSab2.chr26                I 1 C 0
s calJac3.chr10                107994627 693 - 132174527 tgtgatattcctctagtctcacaccacagcaattgatcggtaacac---agacttctgtgaccaaatatgtgggttttttttctccatacatataccaagcagcagacatcagctgagtgtcctctaatttagttctgacactacactttctacctggagatagtgtcagattccacaagttgaggactcagtccccaagactgcccaccctcaaccacccagtcacaactctaggcctcgtgaattctgacctactggctttaagttggggttctcatgaccccctctttgggtttgattaatttgttggagtggctcacagaatgcagggaaacatttaaatttac-ggtttattataaaggatattgacaaggatatagacaaagagacatctagagcaatgtgatggggaaggagagcagagctttcatgccattcctgggtgggccaccctccaggaacttccatgtgttcagctatccagaagctcactgaaccctgtcctcctggatttttatggaagtttgatGACATcagcattcctccctccagggtatagggtgggactctcttctgagatggtcttaagacccacaaccagaaaggcacaaacataataatgaaaggaggccatgagaaagtgagaggactgctcgggaggcctaacacacccaacattatagcaaaaatctgta
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9131270 677 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121003  55 - 182113224 I
e canFam3.chr30                 26812632 3275 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=2997.000000
s hg38.chr14_KI270725v1_random    162452 1 +    172810 a
s panTro4.chrUn_GL393505          303737 1 +   1195001 a
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9131947 1 -  12672142 a
i panPan1.JH650621             I 677 I 884
s ponAbe2.chrUn                  5827225 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547080 1 + 121039945 a
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887045 1 - 170124641 a
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147877403 1 - 171882078 a
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140804443 1 - 162156779 a
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36192616 1 +  58131712 a
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107995320 1 - 132174527 g
i calJac3.chr10                C 0 C 0
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121003 55 - 182113224 I
e canFam3.chr30                 26812632 3275 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=249676.000000
s hg38.chr14_KI270725v1_random    162453  87 +    172810 caagtgctaggggagttataagccaggaactgtggatgaaaaccaa--------------------------------------------tatatatcataacaccacaGTTGCTGAGAAAATATTCATGG
s panTro4.chrUn_GL393505          303738  87 +   1195001 taagtgctaggcgagttataagccaggaactgtggatgaaaaccaa--------------------------------------------tatatatcataacaccacaGTTGCTGAGAAAATATTCATGG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5827226  87 +  72422247 caagtgctagaggagttataagccaggaactgtggatgaaaaccaa--------------------------------------------tatatatcataacactacaGTTGCTGAGAAAATATTCATGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547081  87 + 121039945 caagggctaggggagttataagccaggaactgtggatggaaaccaa--------------------------------------------tatatatcataacaccacaGTTGCTGAGAAAATATTCATGG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887046  87 - 170124641 caagggctaggggagttataagccaggaaatgtggatgaaaaccaa--------------------------------------------tatatatcataacgccacaGTTGCTGAGAAAATATTCGTGG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147877404  87 - 171882078 caagggctaggggagttataagccaggaaatgtggatgaaaaccaa--------------------------------------------tatatatcataacgccacaGTTGCTGAGAAAATATTCGTGG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140804444  87 - 162156779 caagggCTAGGGGAGTTATAAGCCAGGAAACGTGGATGAAAACCAA--------------------------------------------TATATATCATAACACCACAGTTGCTGAGAAAATATTCGTGG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36192617  87 +  58131712 caagggctaggggagttataagccaggaaatgtggatgaaaaccaa--------------------------------------------tatatatcataacaccacaGTTGCTGAGAAAATATTCGTGG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107995321 131 - 132174527 caagggctatgagagttataagccaggaactgtggaggaaaacatatctctatctatctatctatctatctacctatctatctatctatctatatctcaaaacaccacaGTTGCTGAGAAAATATTCAGAG
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121003  55 - 182113224 I
e canFam3.chr30                 26812632 3275 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=552541.000000
s hg38.chr14_KI270725v1_random    162540 185 +    172810 AAAATAGACCTAAATTGA-TACTGCCTATTGACATAATTTACTTTACTGATCTTTTCCTTCACCA-TTTTAATAAAT-AGCTCAGAAAATAATGAGTCCCATTCAAAGATAATAATAGAAAAGATACCAGCACTGTGCCTGTGTAACATATATTTCATGTTAGA----G-AAAAGCAACAAAGACAATATAAT
s panTro4.chrUn_GL393505          303825 185 +   1195001 AAAATACACCTAAATTGA-TACTGCCTAATGACATAATTTACTTTACTGATCTTTTCCTTCACCA-CTTTAATAAAT-AGCTCAGACAATAATGAGTCTCATTCAAAGATAATAATAGAAAAGATACCAGCACTGTGCCTGTGTAACATATGTTTCATGTTAGA----G-AAAAGCAACAAAGACAATATAAT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5827313 185 +  72422247 AAAATAGACCTAAATTGA-TACTGCCTATTGACATAATTTACTTTACTGATCTTTTCCTTCACCA-TTTTAATAAAT-AGCTCAGACAAAAATGAGTCCCATTCAAAGATAATAATAGACAAGATAGCAGCACTGTGCCTGTATAACATATATTTCATGTTAGA----G-AAAAGCAACAAAGACAATATAAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547168 185 + 121039945 AAAATAGACCTAAATTGA-TACTGCCTATTGACATAATTTACTTTACTGATCTTTTCCTTCACCA-TTTTAATAAAC-AGCTCAGACAATAACGAGTCCCATTCAAAGATAATAATAGAAAAGATACCAGCACTGTGCCTGTGTAACATATATTTGATGTTAGA----G-AAAACCAACAAAGACAATATAAC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887133 172 - 170124641 AAAACAGACCTAAATTGA-TA----CTGTTGACATAATTTACTTTACTGATCTTTTCCTTCACCA-TTTTAATAAAT-AGCTCAGACAATAATGAGTCCCATTCAAAGATAATAATAGAAAAGATACCAGCACTG---------AACATATATTTCATGCTAGA----G-AAAAGCAACAAAGACAATATAAC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147877491 172 - 171882078 AAAACAGACCTAAATTGA-TA----CTGTTGACATAATTTACTTTACTGATCTTTTCCTTCACCA-TTTTAATAAAT-AGCTCAGACAATAATGAGTCCCATTCAAAGATAATAATAGAAAAGATACCAGCACTG---------AACATATATTTCATGCTAGA----G-AAAAGCAACAAAGACAATATAAC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140804531 175 - 162156779 AAAACAGACCTAATTTGA-TA----CTGTTGACACAATTTATTTTACTGATCTTTTCCTTcaccatttttaataaataagctcAGACAATAATGAGTCCCATTCAAAGATAATAATAGAAAAGATACCAGCACTG---------AACATATATTTCATGCTAGA----GAAAAAGCAACAAAGACAATATAAC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36192704 176 +  58131712 AAAACAGACCTAAATTGA-TACTGTCTGTTGACATAATTTACTTTACTGATCTTTTCCTTCACCA-TTTTAATAAAT-AGCTCAGACAATAATGAGTCCCATTCAAAGATAATAATAGAAAAGATACCAGCACTG---------AACATATATTTCATGCTAGA----G-AAAAGCAACAAAGACAATATAAC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107995452 185 - 132174527 AAAATAGACCTAAATTGT-TACTACCTATTGACATAATTTACGTTACTAATCTCTTCCTTCACCA-TTTTAATATAT-AACTCAGACAATAATGAGTCTTATTCAAGGATAATAATAAAAAAGATACCATCACTGTGACTGTGTAACATATATTTCATGTTAGA----G-AAAAACAAAAAAGACAATATGAC
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121058 182 - 182113224 AAAACAG-CCTGAATTAACTGTCAATTGTTAGCACAATTCACTCTGCTGATGTTCT-ATTTGCTG-TTTTAACAAAC-AACTCAGATAAAAACATACCTCATACAGAAATAGTA----AAATAATACCCTCTCTG--CCCATGTGGAATATACTTCATGTTAAATAGTG-GGAAACAACAAGGGCGATATGAC
i mm10.chr2                    I 55 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26812632 3275 -  40214260 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=494288.000000
s hg38.chr14_KI270725v1_random    162725 160 +    172810 ATTAAAAGACAGAAAAAAATTACATGCCACATTGACTATCATTGAATCACAAAGTGAATACAAATTTTTAATGCATTGTTTCATTAAATCAAACTCCC-------CTTCCTGCACCAATACAACTCCTCTGATGT-----------AAGTGACCTAAAAAGACATAAATAGGTTTTAA
s panTro4.chrUn_GL393505          304010 160 +   1195001 ATTAAAAGACAGAAAAAAATTACATGCCACATTGACTATCATTGAATCACAAAGTGAATACAAATTTATAATGCATTGTTTCATTAAATCAAACTCCC-------CTTCCCGCACCAACACAACTGCTCTGATGT-----------AAGTGATCTAAAAAGACATAATTAGGTTTTAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5827498 160 +  72422247 ATTAAAAGACAGAAAAAAATTACATGCCACATTGACTATCATTGAATCACAAATTGAATACAAATTTTTAATGCATTGTTTCATTAAATCAAACTCCC-------ATTCCTGCACCAATACAACTCCTCTGATGT-----------AAGTGACCTAAAAAGACATAAATAGCTTTTAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547353 159 + 121039945 ATTAAAAGACAG-AAAATATTACATGCCACATTGACTATCATTGAGTCACAAAGTGAATACAAATTTTTAATGCATTGTTTCATTAAATCAAACTCCC-------CTACCCGCACCAATATAACTCCTCTGATGT-----------AAGTGACCTAAAAAGACATAAATAGATTTTAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887305 160 - 170124641 ATTAAAAGACAGAAGAAAATTACGTGCCACACTGACTATCATTGAGTCACAAAGTGAACACAAATTTTTAATGCATTATTTCATTAAATCAAACTCCC-------CTATCTGCACCAATACAACTCCTCTGATGT-----------AAGTGACCTAAAAAGACATAAATAGGTTTTAA
i rheMac3.chr7                 C 0 I 217
s macFas5.chr7                 147877663 160 - 171882078 ATTAAAAGACAGAAGAAAATTACGTGCCACACTGACTATCATTGAGTCACAAAGTGAACACAAATTTTTAATGCATTATTTCATTAAATCAAACTCCC-------CTATCTGCACCAATACAACTCCTCTGATGT-----------AAGTGACCTAAAAAGACATAAATAGGTTTTAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140804706 160 - 162156779 attaaaagacagaagaaaattaCATGCCACACTGACTATCATTGAGTCACAAAGTGAACACaaatttttaatgcattatttcattaaatcaaACTCCC-------CTATCTGCACCAATACAACTCCTCTGATGT-----------AAGTGACctaaaaagacataaataggTTTTAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36192880 160 +  58131712 ATTAAAAGACAGAAGAAAATTACATGCCACACTGACTATCATTGAGTCACAAAGTGAACCCAAATTTTTAATGAATTATTTCATTAAATCAAACTCCC-------CTACCTGCACCAATACTACTCCTCTGATGT-----------AAGTGACCTAAAAAGACATAAATAGGTTTTAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107995637 160 - 132174527 ATTAAAAAACAGAAAAAAATTACATGCTACATTGACTATCATTGAGTCATAAAGTGAATAAAGAATTTTAATGCATCGTTCCATTAAATCAAACTCTC-------CTGCCCACATCAATACAACTCCTCTGATGT-----------AAGTGACCTAAAAAGCGATAAATAGGTTTTAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121240 149 - 182113224 AAGAAAAGATAGGACAGAG-AATATACCGCATCAATTAGCTTTGAGTTACAAAGGTAACA-GCATCTGTAAAAC-CTGTTCCATTAAATCA-------------------------AAGAGGACTCTGCTGACATGCAGATGCAGAGAGAGATACAAGGAGAGATAATGCAGCTTAG-
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26815907 158 -  40214260 ataaaaaaaaaagaaaaaaaaaTATGC------AAATAGCCAAAAACCACAAAA-AAACA-AAAAACAAAAAACATTATCCCTTAAAATCAAAACAATCAAGAAACTTCCCAAACAAATAGGAATCCTTTGACAT-----------AAATGATCAAAAATGAGTTAGTAAGACTTAA-
i canFam3.chr30                I 3275 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=414575.000000
s hg38.chr14_KI270725v1_random    162885 152 +    172810 AGCAGATATAAGATAAATGCAATATATGTAGTGTGAGCTTAGGGAAAGATAAAAGGGA----AAATATCTTTTATCTGAGAAATATATACCACACGAGAAACAGCAGAAATGAAGAATAGATATTTTCAAAATTTACTCAAATAAATGGTGTATAA
s panTro4.chrUn_GL393505          304170 152 +   1195001 AGCAGATATAAGATAAATGCAATATATGTACTGTGAGCTTAGGGAAAGAAAAAAGGGA----AAATATCTTTTATCTGAGAAATATATACCACACTAGAAACAGCAAAAATGAAGAATAGATATTTTCAAAATTTACTCAAATAAACGGTGTATAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5827658 150 +  72422247 AGCAGATATAAGATAAATGCAATATATGTAGTGTGAGCTTA--GAAAGATAAAAGGGA----AAATATCTTTTATCTGAGAAATATATACCACACTAGAAACAGCAAAAATGAAGAATAGATAGTTTCAAAACTTACTCAAATAAATGGTGTGTAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547512 156 + 121039945 AGCAGATATAAGACAAATGCAATACATGTAATGTGAGCTTAGGAAAAGATAAAAGAGAAAATAAATATCTTTTATCTGAAAAACATACACCACACTAGAAACAGCAAAAATGAAGAACAGATATTTTCAAAACTTATTCAAATAAATGATGTATAA
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147877823 156 - 171882078 CGTAGATATAAGATACATGCAATATATGTAGTGTGAGCTTAGGGAAAGATAAAAGAGAAAATAAATATCTTTTATCGGAGAAATATATACCACACTAGAAACAGCAAAAATGAAAAATAAATATTTTCAAAATTTACTCAAATAAATGGTGTATAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140804866 156 - 162156779 CGTAGATATAAGATACATGCAATATATGTAGTGTGAGCTTAgggaaagataaaagagaaaataaatatcttttatctGAGAAATATATACCACACTAGAAACagcaaaaatgaagaataaatattttcaaaatttactcaaataaatggtgtataa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193040 156 +  58131712 AGTAGATATAAGATACATGCAATATATGTAGAGTGAGCTTAGGGAAAGATAAAAGAGAAAATAAATATCTTTTATCTGAGAAATATATACCACACTAGAAACAGCAAAAATGAAGAATAAATATTTTCAAAATTTACTCAAATAAATGGTGTATaa
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107995797 154 - 132174527 AGCAGATATGAGACAAATGTAATATATGTACTGTGAGCTTAGGGAAAGATAAAAGAGAAAATAAATATCTTTTATCTGAGAAGTATATACTATGCTAG--ATAGCAAAAATGAAGAATAGACTTTTTCAAAATTTACTCAAATAAATGGTGTATAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121389 135 - 182113224 TGCAAGTGTCAGGTGAGTACAGTGTATGAAAAGGGAGCTTA-CCATAGATAAGAAAGAATATAAATACCTC-----------AAACATATCACACTAGAAACAGCA-AGATGATGAATGTATCCTTTAGCA--------AAAGAAATGAAATATGA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816065 140 -  40214260 GGTAGATATAAGATAAATGAAATACATGAAAAGTGAGCTTAGGAAAAAAGAAAATAAA--------ATCTTTAATTTCAGAAATATAG-------TAGGAATAGCA-AAATGGAGAATAGATGTTTTCAGAATTTACTGAAGGAAGTATAGTAGAA
i canFam3.chr30                C 0 I 259
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I

a score=-1437.000000
s hg38.chr14_KI270725v1_random    163037 2 +    172810 --CA
s panTro4.chrUn_GL393505          304322 2 +   1195001 --GA
i panTro4.chrUn_GL393505       C 0 I 45
s ponAbe2.chrUn                  5827808 2 +  72422247 --GA
i ponAbe2.chrUn                C 0 I 40
s chlSab2.chr26                 36193196 2 +  58131712 ga--
i chlSab2.chr26                C 0 I 45
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121524 0 - 182113224 C
e canFam3.chr30                 26816205 259 -  40214260 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I
e calJac3.chr10                107995951 0 - 132174527 C
e papAnu2.chr7                 140805022 0 - 162156779 C
e macFas5.chr7                 147877979 0 - 171882078 C
e nomLeu3.chr6                  53547668 0 + 121039945 C

a score=0.000000
s hg38.chr14_KI270725v1_random    163039 7 +    172810 GTTTACA
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121524 0 - 182113224 C
e canFam3.chr30                 26816205 259 -  40214260 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36218238 1785 -  36342412 I
e calJac3.chr10                107995951 0 - 132174527 C
e chlSab2.chr26                 36193198 45 +  58131712 I
e papAnu2.chr7                 140805022 0 - 162156779 C
e macFas5.chr7                 147877979 0 - 171882078 C
e nomLeu3.chr6                  53547668 0 + 121039945 C
e ponAbe2.chrUn                  5827810 40 +  72422247 I
e panTro4.chrUn_GL393505          304324 45 +   1195001 I

a score=63.000000
s hg38.chr14_KI270725v1_random    163046 5 +    172810 CCATT
s otoGar3.GL873530              36220023 5 -  36342412 CCAGG
i otoGar3.GL873530             I 1785 I 264
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121524 0 - 182113224 C
e canFam3.chr30                 26816205 259 -  40214260 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e calJac3.chr10                107995951 0 - 132174527 C
e chlSab2.chr26                 36193198 45 +  58131712 I
e papAnu2.chr7                 140805022 0 - 162156779 C
e macFas5.chr7                 147877979 0 - 171882078 C
e nomLeu3.chr6                  53547668 0 + 121039945 C
e ponAbe2.chrUn                  5827810 40 +  72422247 I
e panTro4.chrUn_GL393505          304324 45 +   1195001 I

a score=20692.000000
s hg38.chr14_KI270725v1_random    163051 74 +    172810 --GTAAATTGTAGAACAATTTACAATGTAGAACAATATTTATATTGTTCTAGGTATTACAAAATTTATAGTTGTTT
s nomLeu3.chr6                  53547668 47 + 121039945 --GAAAAAAATTGAGCAAAACAAAACGAAAAAGAATAAATA------------AATAACAA---------------
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147877979 47 - 171882078 --GAAAAAAATCGAGCAAAACAAAATGAAAAAGAATAAATA------------AATAACAA---------------
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805022 47 - 162156779 --gaaaaaaatcgagcaaaacaaaatgaaaaagaataaata------------aataacaa---------------
i papAnu2.chr7                 C 0 C 0
s calJac3.chr10                107995951 47 - 132174527 --GAAAAAAATCAAGCAAAACAAAATGAAAAAGAATAACTA------------AATAACAA---------------
i calJac3.chr10                C 0 I 2
s mm10.chr2                     58121524 44 - 182113224 GCAGGAAAATGCAAGCAAAACAATTCAGAAACTCATA----------------CATGACA----------------
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26816205 259 -  40214260 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220028 264 -  36342412 I
e chlSab2.chr26                 36193198 45 +  58131712 I
e ponAbe2.chrUn                  5827810 40 +  72422247 I
e panTro4.chrUn_GL393505          304324 45 +   1195001 I

a score=2800.000000
s hg38.chr14_KI270725v1_random    163125 1 +    172810 G
s panTro4.chrUn_GL393505          304369 1 +   1195001 G
i panTro4.chrUn_GL393505       I 45 C 0
s ponAbe2.chrUn                  5827850 1 +  72422247 G
i ponAbe2.chrUn                I 40 C 0
s nomLeu3.chr6                  53547715 1 + 121039945 G
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147878026 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805069 1 - 162156779 g
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193243 1 +  58131712 g
i chlSab2.chr26                I 45 C 0
s mm10.chr2                     58121568 1 - 182113224 G
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26816205 259 -  40214260 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e saiBol1.JH378136              10789379 13573 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220028 264 -  36342412 I
e calJac3.chr10                107995998 2 - 132174527 I

a score=7357.000000
s hg38.chr14_KI270725v1_random    163126 3 +    172810 -GGT
s panTro4.chrUn_GL393505          304370 3 +   1195001 -GGT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5827851 3 +  72422247 -GGT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547716 3 + 121039945 -GGT
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147878027 3 - 171882078 -GGT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805070 3 - 162156779 -ggt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193244 3 +  58131712 -GGT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996000 2 - 132174527 --GT
i calJac3.chr10                I 2 C 0
s saiBol1.JH378136              10802952 3 +  21366645 -GGT
i saiBol1.JH378136             I 13573 C 0
s mm10.chr2                     58121569 4 - 182113224 GGGC
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e canFam3.chr30                 26816205 259 -  40214260 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220028 264 -  36342412 I

a score=9202.000000
s hg38.chr14_KI270725v1_random    163129 3 +    172810 AGA
s panTro4.chrUn_GL393505          304373 3 +   1195001 AGA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5827854 3 +  72422247 AGA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547719 3 + 121039945 AGA
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147878030 3 - 171882078 AGA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805073 3 - 162156779 AGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193247 3 +  58131712 AGA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996002 3 - 132174527 AGA
i calJac3.chr10                C 0 C 0
s saiBol1.JH378136              10802955 3 +  21366645 AGG
i saiBol1.JH378136             C 0 I 500
s mm10.chr2                     58121573 2 - 182113224 AG-
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816464 3 -  40214260 AGA
i canFam3.chr30                I 259 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220028 264 -  36342412 I

a score=17904.000000
s hg38.chr14_KI270725v1_random    163132 8 +    172810 ACAATATT
s panTro4.chrUn_GL393505          304376 8 +   1195001 ACAATATT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5827857 8 +  72422247 ACAGTATT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547722 8 + 121039945 ACAATATT
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147878033 4 - 171882078 ACAA----
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805076 8 - 162156779 ACAATATT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193250 8 +  58131712 ACAATATT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996005 8 - 132174527 ACAATATG
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121575 7 - 182113224 ACA-TATT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816467 8 -  40214260 ACAATATT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e rheMac3.chr7                 145887465 217 - 170124641 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220028 264 -  36342412 I

a score=522083.000000
s hg38.chr14_KI270725v1_random    163140 175 +    172810 TATAGTTGTTTGAAGGCAGACAAAGATGACCTAAC--ATGTTGCCATGTAT--ATTTTTTCCAGTTTTCCAAATTTGTTTTTATTGCTGGAAGGTTAGTTTGGTCAG-AGTTATTTCACCATATCAGCAAGTATAATTTTCCAAACTCACACCCCTTACTTTTTGTATCT-----------------TATTTTTTAT--
s panTro4.chrUn_GL393505          304384 175 +   1195001 TATAGTTGTTTGAAGACAGACAAAGCTGACCTAAC--ATGTTACCATGTAT--ATTTTATCCAGTTTTCCAATTTTGTTTTTATTGCTGGAAAGTTAGTTTGGTCAG-AATTGTTTCACCATATCAGCAAGTATAATTTTCCAAACTCACACCCCTTACTTTCTGTGTCT-----------------TATTTTTTAT--
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5827865 175 +  72422247 TATAGTTGTTTGAAGACAGACAAAGCTGACCTAAC--ATGTTACCATGCAT--ATTTTATCCAGTTTTCCAATTTTGTTTTTATTGCTGGAAGGTTAGTTTGGTCAG-AGTTATTTCACCATATCAGCAAGTATAATTTTCCAAACTCACACCCCTTACTTTTTGTATCT-----------------TATTTTTTAT--
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547730 177 + 121039945 TATAGTTGTTTGCAAACAGACAAAGCTGACCTAACATATGTTACCATGTAT--ATGTTATCCAGTTTTCCAATTTTGTTTTTATTGCTGGAAGGTTAGTTTGGTCAG-AGTTACATCACCGTATCAGCAAGTATAATTTTCTAAATTGACACCCCTTGCTTTTTATATCT-----------------TATTTTTTAT--
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887682 180 - 170124641 TATAGTTGTTTGAAGACAGACAAAGCTGACCTAATATATGTTACCATGTAT--ATTTTATCCAGTTTTCCAATTTTGTTTTTATTGCTGGAAGGTTAG-TTGGTCAG-ATTTAT-TTACCATATCAGCAAGTGTAATCTTCTAAATTGACACCCCTTACTTTTTGTATCTTTTT------------GTATTTTTTAC--
i rheMac3.chr7                 I 217 C 0
s macFas5.chr7                 147878037 180 - 171882078 TATAGTTGTTTGAAGACAGACAAAGCTGACCTAATATATGTTACCATGTAT--ATTTTATCCAGTTTTCCAATTTTGTTTTTATTGCTGGAAGGTTAG-TTGGTCAG-ATTTAT-TTACCATATCAGCAAGTGTAATCTTCTAAATTGACACCCCTTACTTTTTGTATCTTTTT------------GTATTTTTTAC--
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805084 180 - 162156779 TATAGTTGTTTGAAGACAGACAAAGCTGACCTAATATATGTTACCATGTAt--attttatccagttttccaattttgtttttattgctggaAGGTTAG-TTGGTCAG-ATTTAT-TCACCATATCAGCAAGTGTAATCTTCTAAATTGACACCCCttactttttgtatcttttt------------gtattttttac--
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193258 180 +  58131712 TATAGTTGTTTGAAGACAGACAAAGCTGACCTAACATATGTTACCATGTAT--ACTTTATCCAGTTTTCCAATTTTGTTTTTATTGCTGGAAGGTTAG-TTGGTCAG-ATTTAT-TCACCATATCAGCAAGTGTAATCTTCTAAATTGACACCCCTTACTTTTTGTATCTTTTT------------GTATTTTTTAC--
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996013 175 - 132174527 TATAGTTGTTTGAAGACAGATGAAGCCAACCTAACATATGTTACCATATAT--ATTTTATTCAGTTTTACAA-TTTGTTTTTATTTTTGGAGGATTAATTTGGTCAG-AGTTGCTTCACCATATCTGTAATTATAATTTTCTAAACTGACACTCTTTA-TTTTTATATCT-----------------TGATTTTTAT--
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121582 158 - 182113224 TAAAGCTCTTTGAAGAAGGAGGACCCTGACC-AATCTTTGTGGTCATGTGTTGGCATTACCCAGGTTTGTAGTCTTATAT---CTGCTTGAGGGTTAG-TTAGTCAGCAGTTACTTTATCACGTACCCAAATACATTTTTCAAACGTAAAGGCTCAT---------------------------------T-TCCAA--
i mm10.chr2                    C 0 I 2
s canFam3.chr30                 26816475 186 -  40214260 TATAGTTATTTCAAGACAGACAAAACTGACCCAACATAAGTTGTTTTATAT--ATTTTATCTAGTTCTATAAATT--TTCCTATGCCTGGA--------TTGGTAAT-AGTTACTTCATTGTGTCTGCATGTGTAAGACTCAAAACTTATATCCTTTACTTCTTATATCTTTGTATGGACTATTACATAtttttcttct
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220028 264 -  36342412 I

a score=4190.000000
s hg38.chr14_KI270725v1_random    163315 1 +    172810 C
s panTro4.chrUn_GL393505          304559 1 +   1195001 C
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828040 1 +  72422247 C
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547907 1 + 121039945 C
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887862 1 - 170124641 C
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878217 1 - 171882078 C
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805264 1 - 162156779 c
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193438 1 +  58131712 C
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996188 1 - 132174527 C
i calJac3.chr10                C 0 C 0
s otoGar3.GL873530              36220292 1 -  36342412 T
i otoGar3.GL873530             I 264 I 48
s canFam3.chr30                 26816661 1 -  40214260 c
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121740 2 - 182113224 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I

a score=-11240.000000
s hg38.chr14_KI270725v1_random    163316 10 +    172810 C------------TTTTATTAC-------------------
s panTro4.chrUn_GL393505          304560 10 +   1195001 C------------TACTATTAC-------------------
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828041 10 +  72422247 C------------tattattac-------------------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547908 13 + 121039945 CTA---------TTATTATTAT-------------------
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887863 13 - 170124641 CTA---------TTATTATTAC-------------------
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878218 13 - 171882078 Cta---------ttattattac-------------------
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805265 13 - 162156779 cta---------ttattattac-------------------
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193439 13 +  58131712 Cta---------ttattattac-------------------
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996189 21 - 132174527 CTATTAAGCA-TTTATTACTAC-------------------
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121742  7 - 182113224 ------------GCATTAG----------------------
i mm10.chr2                    I 2 C 0
s canFam3.chr30                 26816662 38 -  40214260 ---cttctccttctcttcttcctcctgctccttcttcttct
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220293 48 -  36342412 I

a score=9838.000000
s hg38.chr14_KI270725v1_random    163326 4 +    172810 ATAT
s panTro4.chrUn_GL393505          304570 4 +   1195001 atat
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828051 4 +  72422247 atat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547921 4 + 121039945 ATAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887876 4 - 170124641 Gtat
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878231 4 - 171882078 gtat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805278 4 - 162156779 gtat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193452 4 +  58131712 gtat
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996210 4 - 132174527 TTAT
i calJac3.chr10                C 0 C 0
s otoGar3.GL873530              36220341 4 -  36342412 AAAG
i otoGar3.GL873530             I 48 I 3247
s mm10.chr2                     58121749 3 - 182113224 -AAT
i mm10.chr2                    C 0 I 1
s canFam3.chr30                 26816700 4 -  40214260 ATGT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I

a score=33219.000000
s hg38.chr14_KI270725v1_random    163330 12 +    172810 -TTTATAATAT-AT
s panTro4.chrUn_GL393505          304574 13 +   1195001 -tttataatattat
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828055 13 +  72422247 -tttataatattat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547925 13 + 121039945 -TTTATAATATTAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887880 13 - 170124641 -tttataatattat
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878235 13 - 171882078 -tttataatattat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805282 13 - 162156779 -tttataatattat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193456 13 +  58131712 -tttataatattat
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996214 10 - 132174527 -TTT---ATATTAT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121753 12 - 182113224 -TTTATAATTTGC-
i mm10.chr2                    I 1 I 1
s canFam3.chr30                 26816704 13 -  40214260 TTTCATGATGT-AT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=5005.000000
s hg38.chr14_KI270725v1_random    163342 1 +    172810 A
s panTro4.chrUn_GL393505          304587 1 +   1195001 a
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828068 1 +  72422247 a
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547938 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887893 1 - 170124641 a
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878248 1 - 171882078 a
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805295 1 - 162156779 a
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193469 1 +  58131712 a
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996224 1 - 132174527 A
i calJac3.chr10                C 0 C 0
s micMur1.scaffold_151869             82 1 -       973 a
i micMur1.scaffold_151869      N 0 N 0
s canFam3.chr30                 26816717 1 -  40214260 A
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e mm10.chr2                     58121765 1 - 182113224 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=86451.000000
s hg38.chr14_KI270725v1_random    163343 28 +    172810 T--TCAATACTGAATTATACAGTAAATAAA
s panTro4.chrUn_GL393505          304588 29 +   1195001 ta-tCCATACTGAATTATACAGTAAATAAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828069 30 +  72422247 tattccatactgaattatacaataaataaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547939 30 + 121039945 TATTCCATACTGAATTATACAGTAAATAAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887894 30 - 170124641 tattCCACACTGAATTATACAGTAAATAAA
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147878249 30 - 171882078 tattCCACACTGAATTATACAGTAAATAAA
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140805296 30 - 162156779 tattccaCACTGAATTAtacagtaaatgaa
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36193470 30 +  58131712 tattCCACACTGAATTATACAGTAAATAAA
i chlSab2.chr26                C 0 I 1
s calJac3.chr10                107996225 30 - 132174527 TATTACATACTGAATTATACAGTAAATTAA
i calJac3.chr10                C 0 I 1
s mm10.chr2                     58121766 22 - 182113224 --TTTATTATTGAATGAGTT--TAAA----
i mm10.chr2                    I 1 C 0
s canFam3.chr30                 26816718 28 -  40214260 --TTATATAATGAATTATGCAGTCAATGAC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9131948 884 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=16676.000000
s hg38.chr14_KI270725v1_random    163371 3 +    172810 AAA
s panTro4.chrUn_GL393505          304617 3 +   1195001 AAA
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9132832 3 -  12672142 aaa
i panPan1.JH650621             I 884 I 219
s ponAbe2.chrUn                  5828099 3 +  72422247 aaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547969 3 + 121039945 AAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887925 3 - 170124641 AAA
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147878280 3 - 171882078 AAA
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140805327 3 - 162156779 aaa
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36193501 3 +  58131712 AAA
i chlSab2.chr26                I 1 C 0
s calJac3.chr10                107996256 3 - 132174527 AAA
i calJac3.chr10                I 1 C 0
s mm10.chr2                     58121788 3 - 182113224 AGA
i mm10.chr2                    C 0 I 5
s canFam3.chr30                 26816746 3 -  40214260 AAA
i canFam3.chr30                C 0 I 3
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=99415.000000
s hg38.chr14_KI270725v1_random    163374 42 +    172810 TAAAATATGA-ACACAACAATTTCATACAAACGGTGAGTTTTT
s panTro4.chrUn_GL393505          304620 42 +   1195001 TCAAATATGA-ACACAAAAATTTCATAGAAATGGTGAGGTTTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828102 42 +  72422247 taaaatatGA-ACACAACAATTTTATAGAAATGGTGAGGTTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53547972 36 + 121039945 ------ATGA-ACAAAACAATTTCATAGAAATGGTGAGGTTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887928 42 - 170124641 TAAAATGTGA-ACAAAACAATTTCACAGAAATGGTGAGGTTTT
i rheMac3.chr7                 C 0 I 3
s macFas5.chr7                 147878283 42 - 171882078 TAAAATGTGA-ACAAAACAATTTCACAGAAATGGTGAGGTTTT
i macFas5.chr7                 C 0 I 3
s papAnu2.chr7                 140805330 42 - 162156779 taaaatgtga-acaaaacaatttcacagaaatggtgaggtttt
i papAnu2.chr7                 C 0 I 3
s chlSab2.chr26                 36193504 42 +  58131712 TAAAATGTGA-ACAAAACAATTTCATAGAAATGGTGAGGTTTT
i chlSab2.chr26                C 0 I 3
s calJac3.chr10                107996259 37 - 132174527 CAAAATATTA-ACAAAACAATTTCATAGAAATG----AGTTT-
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121796 39 - 182113224 TACATCGTGATGCATTAAATTTAAAAATCATCAATGAAG----
i mm10.chr2                    I 5 C 0
s canFam3.chr30                 26816752 37 -  40214260 TAAAATATCA-ACCAAATAACCTCAAAGGAATGAACAT-----
i canFam3.chr30                I 3 C 0
e panPan1.JH650621               9132835 219 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130387991 32825 - 153844193 I
e rhiRox1.KN300076v1             2063606 9481 +   2481265 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=2163.000000
s hg38.chr14_KI270725v1_random    163416 1 +    172810 T
s panTro4.chrUn_GL393505          304662 1 +   1195001 T
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828144 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548008 1 + 121039945 T
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887973 1 - 170124641 C
i rheMac3.chr7                 I 3 C 0
s macFas5.chr7                 147878328 1 - 171882078 C
i macFas5.chr7                 I 3 C 0
s papAnu2.chr7                 140805375 1 - 162156779 c
i papAnu2.chr7                 I 3 C 0
s chlSab2.chr26                 36193549 1 +  58131712 C
i chlSab2.chr26                I 3 C 0
s nasLar1.chr7                 130420816 1 - 153844193 C
i nasLar1.chr7                 I 32825 I 5449
s rhiRox1.KN300076v1             2073087 1 +   2481265 C
i rhiRox1.KN300076v1           I 9481 N 0
s calJac3.chr10                107996296 1 - 132174527 T
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121835 1 - 182113224 T
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816789 1 -  40214260 C
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9132835 219 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=399367.000000
s hg38.chr14_KI270725v1_random    163417 114 +    172810 TTTTTTAGTTGAAGCAGAAGTTCATGACTTGAAAATAGAATGATGCAGTAA------------AGAAATAAACTCTAGAACTCATTTTATGGAAAAAGTGAAAACAATTTGCAACATTAAAATAAT
s panTro4.chrUn_GL393505          304663 111 +   1195001 TTT---AATTGAAGCAGAAATTCATGACTTGAAAATAGAATGATGCAGTAA------------AGAAATAAACTCAAGAACTCATTTTATGGAAAAACTGAAAACAATTTGCAACATTAAAATAAT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5828145 112 +  72422247 TTT--TAATTGAAGCAGAAGTTCATGACGCGAAAATAGAATGATGCAGTAA------------AGATATAAACTCAAGAACTCATTTTATGGAAAAAGTGAAAACAATTTGCAACATTAAAATAAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548009 114 + 121039945 TTTTTTAATTGAAGCAGAAGTTTATGACTTGAAAATAGAATGATGCAGTAA------------AGAAATAAACTCAAGAACTCACTTTATGGAAAAAGTGAAAACAATTTGCGACATTAAAATAAC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145887974 114 - 170124641 TTTTTTAATTGAAGCAGAAGTTCATGACTTGAAAATAGAATGATGCAGTAA------------AGAAATAAACTCAAGAACTCATTTTGTGGAAAAAGTGAAAGCAATTTGCAACATAAAAATAAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878329 114 - 171882078 TTTTTTAATTGAAGCAGAAGTTCATGACTTGAAAATAGAATGATGCAGTAA------------AGAAATAAACTCAAGAACTCATTTTGTGGAAAAAGTGAAAGCAATTTGCAACATAAAAATAAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805376 114 - 162156779 ttttttaattgaagcAGAAGTTCATGACTTGAAAATAGAATGATGCAGTAA------------AGAAATAAACTCAAGAACTCATTTTGtggaaaaagtgaaaacaatttgcaacataaaaataat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193550 114 +  58131712 TTTTTTAATTGAAGCAGAAGTTCATGACTTGAAAATAGAATGATGCAGTAA------------AGAAATAAACTCAAGAACTCATTTTATAGAAAAAGTGAAAACAATTTGCAACATTAAAATAAT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996297 114 - 132174527 CTTTTAAATTGAAGCAGAAGTTCCTGACTTGAGGATAGAAAGATGGAGTAA------------AGAAATAAACTCAAGAACTCATTCTACAGGGAAAGTGAAAACAATTTACAACATTACAATAAT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121836 121 - 182113224 ATTTTTAGAAGAATGACAAGTGTA-----AAAAAATAACAGGAGTCACTAATGTTAAGAAAACAAAAATTAACCCAAGAGCTGGTTCTTTGAAAAGAGTTGAAACaaattataataataatataaa
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816790 113 -  40214260 TTTTTAAACTGGAGCAGGAATTCATGACTTGAAAATATAATGATAAGATA-------------ACAAATAAACCCAAGAATTAGTTCTTTGGATAAAATAAAAATAATATACCACAGTAAAATATT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9132835 219 -  12672142 I
e gorGor3.chr7                  58822765 2307 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=239353.000000
s hg38.chr14_KI270725v1_random    163531 63 +    172810 TAATCAGAACTTCAATCCAGATTAAGAAGGAATAGAGAACAAATATTAAAATTGGAAGGCAAT
s panTro4.chrUn_GL393505          304774 59 +   1195001 TA----GAACCTCAATCCAGATTAAGAAGGAATAGAGAACAAATGTTAAAATTGGAAGGCAAT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825072 63 + 158137892 TAATCAGAACCTCAATCCAGATTAAGAAGGAATAGAGAACAAATATTAAAATTGGAAGGCAAT
i gorGor3.chr7                 I 2307 C 0
s ponAbe2.chrUn                  5828257 63 +  72422247 TAATCAGAACCTCAATCCAGATTAAGAAGGAATAGAGAACAAATATTAAAACTGGAAGGCAAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548123 63 + 121039945 TAATCAGAACCTCAATCCAGATAAAGAAGGAATAGAGAACAAATATTAAAATTGGAAGGCAAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888088 63 - 170124641 TAATCAGAACCTCAATCCAGATAAAGAAGGAATAGAGAACAAATATTGAAATTGGAAGGCAAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878443 63 - 171882078 TAATCAGAACCTCAATCCAGATAAAGAAGGAATAGAGAACAAATATTGAAATTGGAAGGCAAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805490 63 - 162156779 taatcagAACCTCAATCCAGATAAAGAAGGAATAGAGAACAAATATTGAAATTGGAAGGCAAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193664 63 +  58131712 TAATCAGAACTTCAATTCAGATAAAGAAGGAATAGAGAACAAATATTGAAATTGGAAGGCAAT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996411 63 - 132174527 TAATTAGAACATCAAGCCAGATAAAGAAGGAATAGAGAGGTAATATTAAATTTGGAAGGCAAT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58121957 58 - 182113224 ---ttaCAACATT--CCCACTCAAGGTATGAAACAATATCAAGTCTTAAAAATTGGCTGCTAT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816903 58 -  40214260 TCACAGAAGTTTCAATCTAGACAAATTAGAAACAAATCCGTAATATTAACATAGAAAT-----
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9132835 219 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=6600.000000
s hg38.chr14_KI270725v1_random    163594 1 +    172810 G
s panTro4.chrUn_GL393505          304833 1 +   1195001 G
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9133054 1 -  12672142 G
i panPan1.JH650621             I 219 I 1213
s gorGor3.chr7                  58825135 1 + 158137892 G
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828320 1 +  72422247 G
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548186 1 + 121039945 G
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888151 1 - 170124641 G
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878506 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805553 1 - 162156779 G
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193727 1 +  58131712 G
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996474 1 - 132174527 G
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58122015 1 - 182113224 G
i mm10.chr2                    C 0 C 0
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26816961 0 -  40214260 C
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=72766.000000
s hg38.chr14_KI270725v1_random    163595 22 +    172810 AAAATATAATCACAGATATTGA
s panTro4.chrUn_GL393505          304834 22 +   1195001 AAAATATAATCACAGATATTGA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825136 22 + 158137892 AAAATATAATCACTGATATTGA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828321 22 +  72422247 AAAATATAATCACAGATATTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548187 19 + 121039945 AAAAT---ATCACAGATATTGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888152 22 - 170124641 AAAATATAATCACAGATATTGA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878507 22 - 171882078 AAAATATAATCACAGATATTGA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805554 22 - 162156779 AAAATATAATCACAGATATTGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193728 22 +  58131712 AAAATATAATCACAGATATTGA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996475 22 - 132174527 AAAATATAATCATAGATATTGG
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58122016 18 - 182113224 -GAAT---AGTATATATAAGGA
i mm10.chr2                    C 0 I 5
s canFam3.chr30                 26816961  8 -  40214260 ------TAATCAAA--------
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=26902.000000
s hg38.chr14_KI270725v1_random    163617 5 +    172810 TCAAG
s panTro4.chrUn_GL393505          304856 5 +   1195001 TCAAG
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825158 5 + 158137892 TCAAG
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828343 5 +  72422247 TCAAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548206 5 + 121039945 TCAAG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888174 5 - 170124641 TCAAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878529 5 - 171882078 TCAAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805576 5 - 162156779 TCAAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193750 5 +  58131712 TCAAG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996497 5 - 132174527 TCAAG
i calJac3.chr10                C 0 I 1
s micMur1.scaffold_110577             95 5 -      1465 CCAAA
i micMur1.scaffold_110577      N 0 I 790
s mm10.chr2                     58122039 5 - 182113224 TTAAA
i mm10.chr2                    I 5 C 0
s canFam3.chr30                 26816969 5 -  40214260 TTAAA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e saiBol1.JH378136              10802958 500 +  21366645 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=7098.000000
s hg38.chr14_KI270725v1_random    163622 1 +    172810 T
s panTro4.chrUn_GL393505          304861 1 +   1195001 T
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825163 1 + 158137892 T
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828348 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548211 1 + 121039945 T
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888179 1 - 170124641 T
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878534 1 - 171882078 T
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805581 1 - 162156779 T
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193755 1 +  58131712 T
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996503 1 - 132174527 T
i calJac3.chr10                I 1 I 5
s saiBol1.JH378136              10803458 1 +  21366645 T
i saiBol1.JH378136             I 500 N 0
s mm10.chr2                     58122044 1 - 182113224 T
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816974 1 -  40214260 T
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e micMur1.scaffold_110577            100 790 -      1465 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=1153.000000
s hg38.chr14_KI270725v1_random    163623 1 +    172810 T
s panTro4.chrUn_GL393505          304862 1 +   1195001 A
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825164 1 + 158137892 T
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828349 1 +  72422247 A
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548212 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888180 1 - 170124641 A
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878535 1 - 171882078 A
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805582 1 - 162156779 A
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193756 1 +  58131712 A
i chlSab2.chr26                C 0 C 0
s mm10.chr2                     58122045 1 - 182113224 A
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816975 1 -  40214260 A
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e micMur1.scaffold_110577            100 790 -      1465 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I
e calJac3.chr10                107996504 5 - 132174527 I

a score=145708.000000
s hg38.chr14_KI270725v1_random    163624 33 +    172810 ATTAGATAAGATAATTTTCTTAATTTTACACAA
s panTro4.chrUn_GL393505          304863 33 +   1195001 ATTAGATAAGATCATTTTCTTAATTTTACACAA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825165 33 + 158137892 ATTAGATAAGATCATTTTCTTAATTTTACACAA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828350 33 +  72422247 ATTAGATAAGATCATTTTCTTAATTTTACACAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548213 33 + 121039945 ATTAGATAAGATCATTTTCTTAATTTTACACAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888181 33 - 170124641 ATCAGATAAGATCATTTTCCTAATTTTACACAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878536 33 - 171882078 ATCAGATAAGATCATTTTCCTAATTTTACACAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805583 33 - 162156779 ATCAGATAAGATCATTTTCCTAATTTTACACAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193757 33 +  58131712 ATCAGATAAGATCATTTTCCTAATTTTACACAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996509 33 - 132174527 ATTAGGTAAGATCATTTTCTTAATCTTATGGAA
i calJac3.chr10                I 5 C 0
s mm10.chr2                     58122046 32 - 182113224 ATTTTGTAAGATC-TTTTTTTAACTTCATGGAA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26816976 32 -  40214260 ATTATACAAGACTACTTTATTAACTTT-TGCAA
i canFam3.chr30                C 0 I 543
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e micMur1.scaffold_110577            100 790 -      1465 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=590213.000000
s hg38.chr14_KI270725v1_random    163657 145 +    172810 ATATATTGGAAACCCTGGATTATACGA-TATTT-CCATATGAAAATATAAGTGACCAAAATG---ACAAGAGTTATAAAATCTCAGTATCTTATTAA------TGAAGAAAAAGATGTTGAAGATATAAAATTCTGAACATTCTCCTCTCAACAAA
s panTro4.chrUn_GL393505          304896 146 +   1195001 ATATATTGGAAACCTTGGATTATATGA-TTTTTTCCATATGAAAATGTAAGTGACCAAAATG---ACAAGAGTTATAAAATCTCAGTATCTTATTAA------TGCAGAAAAAGATGTTGAGGATATAAAATTCTGAACATTCTTCTCTCAACAAA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825198 145 + 158137892 ATATATTGGAAACCCTGGATTATACGA-TATTT-CCATATGAAAATATAAGTGACCAAAATG---ACAAGAGTTATAAAATCTCAGTATCTTCTTAA------TGCAGAAAAAGATGTCGAAGATATAAAATTCTGAACATTCTCCTCTCAACAAA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828383 142 +  72422247 ATATATTGGAAACCCTGGATTATATGA-TTTTTTCCATATGAAAATATAAGTGACCCAAATG---ACAAGAGTTATAAAATCTTAGTATCTTATTAA------TGCAGAAAAAGATGTTGAAGATATAAAATTCTGAACATTCTCCTCTC----AA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548246 149 + 121039945 ATATATTGGAAACCCTGGATTATATTA-TTTTTTCCATATGAAAATATAAGTGACCAAAATGACTACAAGAGTTATAAAATCTCAGTATCTTATTAA------TGCAGAAAAAGAAGTTGAAGATATAAAATTCTGAACATTCTCCTCTCAACAGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888214 150 - 170124641 ATATATTCGAAACCCTGGATTATATGATTTTTTTCCGTATGAAAATATAAGTGACCAAAATGACTACAAGAGTTATAAAATCTCAGTATCTTATTAA------TGCAGAAAAAGATGTTGAAGATATAAAATTCTGAACATTCTCCTCTCAACAAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878569 150 - 171882078 ATATATTCGAAACCCTGGATTATATGATTTTTTTCCGTATGAAAATATAAGTGACCAAAATGACTACAAGAGTTATAAAATCTCAGTGTCTTATTAA------TGCAGAAAAAGATGTTGAAGATATAAAATTCTGAACATTCTCCTCTCAACAAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805616 149 - 162156779 ATATATTGGAAACCCTGGATTATATGA-TTTTTTCCATATGAAAATATAAGTGACCAAAATGACTATAAGAGTTATAAAATCTCAGTATCTTATTAA------TGCAGAAGAAGATGTTGAAGATATAAAATTCTGAACATTCTCCTCTCAACAAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193790 149 +  58131712 ATATATTGCAAACCCTGGATTATATGA-TTTTTTCCATATGAAAATATAAGTGACCAAAATGACTACAAGAGTTCTAAAATCTCAGTATCTTATTAA------TGCAGAAAAAGATGTTGAAGATATGAAATTCTGAACATTCTCCTCTCAACAAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996542 149 - 132174527 ATATATTGGAAACCCTGCATTATACAA-TTTTTTTCATATGAAAATATAAGTGACCAAAATGACTACAAGATTTATAAAATCTCAATATCTTATTAA------TGCAGAAATAGATGTTGTAGGTATAAAATTCTGAGCATTCTCCTCTCAACAAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58122078 108 - 182113224 ATATGTTGTAAAT---------TATGA-C--------TACAAAATTATA------------------AAAACTAATAATAGCTTAGCTTCATATGACATCTTTTGCTAAAAT--------CTGACACAAGCATTGACATATCCCCCTTGCAC----
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26817551 147 -  40214260 ATATATTGAAAGCCCTGGATAATATGA-TTTTTTTCTTAGGAAAACCTAAATGACCGACATTTCCAAAAGGGTTAGAAAATC--AATATCTTATTAA------TAAAGAAAAAGATGTGAGAGATATAAAAGTATGTATATTTTTCTCTCAACAAA
i canFam3.chr30                I 543 I 216
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e micMur1.scaffold_110577            100 790 -      1465 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=1623363.000000
s hg38.chr14_KI270725v1_random    163802 348 +    172810 CAGACAAATCAGCAAGCATGAACATTTTCAAGAAGAAATGTATCAAGACATGAAAGTACTGATAACTCAATGCTATTTAAAGTTTTCCTcttctaattctagctatgacaagttaatttgtatcaggccatcccacctggcaagaacaattatgaaagctgggtaaaattaattaaaaataagtagctattta-----aaggcttctgatagcaatcaaagcatccagaacttgagtgtgtaagctcccagaaagaagagaaacacattgaagtgatttcaacattctccacagcctttcatttggatacatttgctgagcagatagctaagaagaaaacggtagctcagaga
s panTro4.chrUn_GL393505          305042 346 +   1195001 CAGACAAATCAGCAAGCATGAACATTTTCAAGAAGAAATGTATCAAGACATGAAAGTACTGATAACTCAATGCTATTTA--GTTTTCCTcttctaattctagctatgacaagttaatttgtatcaggccatcccacctggcaagaacaattatgaaagctggataaaattaattaaaaataagtagctattta-----agggcttctgataacaatcaaagcatccagaacttgagtgtataacctcccagaaagaagagaaacacattgaagtgatttcaacattctccacaacctttcatttggatacgtttgctgagcagacagctaagaagaaaatggtagctcagaga
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825343 347 + 158137892 CAGACAAATCAGCAAGCACGAACATTTTCAAGAAGAAATGTATCAAGACATGAAAGTACTGATAACTCAATGCTATTTAAAGTTTTCCTcttctaattctagctatgacaagttaatttgtatcaggccatcccacctggcaagaacaattatgaaagctggataaaattaattaaaaataagtagctattta-----agggcttctgatagcaatcaaagcatccagaacttgagtgtgtaagct-ccagaaagaagagaaacacattgaagtgatttcaacattctccgcagcctttcatttggatacatttgctgagcagatagctaagaagaaaatggtagctcagaga
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828525 348 +  72422247 CAGACAAATCAGCAGGCATGAACATTTTCAAGAAGAAATGTATCAAGACATGAAAGTACTGATAACTCAAAGCTATTTCAAGTTTTCCTCttctaattctagctatgaggagttaatttgtatcaggccatcccacctggcaagaacaattatgaaagctggataaaattaattaaaaataagtagctattta-----agggcttctgagagcaatcaaagcatccagaacttgagtgtgtaagctcccagaaagaagagaaacacattgaagtgatttcaacattctccacaacctttcatttggatacatttgctgagcagatagctaagaagaaaatggtagctcagaga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548395 346 + 121039945 CAA--AAATCAGTAGGCATGAACATTTTCAAGAAGAAATGTATCAAGACATGAAAGTACTGATAACTCAATGCTATTTAAAGTTTTCCACttctaattctagctatgacaagttaatttgtatcaagccatcccacctggcaagaacaattatgaaagctggataaaattaattaaaaataagtagctattta-----agggcttccgatagcaatcaaagcatccagaacttgagcgtctaagctcccagaaagaagagaaacacattgaagtgatttcaacattctccacaacctttcatttggatgcacttgctgagcagatagctaagaagaaaatggtagctcagaga
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888364 344 - 170124641 CAGACAAATCAGCAGGCATGAACATTTTCAAGAAGAAATGTATCAAGACATGAAAGTACTGATAACTCAATGCTATTTAAAGTTTTCCacttctaattctagctatgacaagttaatttgtatcaagccatcccacctggcaagaacaattatgaaagctggataaaattaattaaaaataagtagctattta-----agggcttccgatagcaatcaaagcatccagaacttgactgtctg----tctcgaaagaagagaaacacattgaagtgatttcaacattctccacaacctttcatttggatacatttgctgaacagatagctaagaagaaaatggtagctcagaga
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147878719 344 - 171882078 CAGACAAATCAGCAGGCATGAACATTTTCAAGAAGAAATGTATCAAGACATGAAAGTACTGATAACTCAATGCTATTTAAAGTTTTCCACttctaattctagctatgacaagttaatttgtatcaagctatcccacctggcaagaacaattatgaaagctggataaaattaattaaaaataagtagctattta-----agggcttccgatggcaatcaaagcatccagaacttgactgtctg----tctcgaaagaagagaaacacattgaagtgatttcaacattctccacaacctttcatttggatacatttgctgaacagatagctaagaagaaaatggtagctcagaga
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140805765 344 - 162156779 CAGACAAATCAGCAGGCATGAACATTTTCAAGAAGAAATGTATCAAGACATGAAAGTACTGATAACTCAATGCTATTTAAAGttttccacttctaattctagctaTGACAAGTTAATTTGTATCAAGCCATCCCACCTGGCAAGAACAATTATGAAAGCtggataaaattaattaaaaataagtagcTATTTA-----AGGGCTTCCGATAGCAATCAAAGCATCCAGAACTTGACTGTCTG----TCTCGAAAGAAGAGAAACACATTGAAGTGATTTCAACATTCTCCACAACCTTTCATTTGGATACATTTGCTGAACAGATAGCTAAGAAGAAAATGGTAGCTCAGAGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36193939 339 +  58131712 CAGACAAATCAGCAGGCATGAACATTTTCACGAAGAAATGTATCAAGACATGAAAGTACTGAT-----AATGCTATTTAAAGTTTTCCACttctaattctagctatgacaagttaatttgtatcaagccatcccacctggcaagaacaattatgaaagctggataaaattaattaaaaataagtagctattta-----agggcttccgatagcaatcaaagcatccagaacttgactgtctg----tctcgaaagaagagaaacacattgaagtgatttcaacattctccaccacctttcatttggatacattggctgaacagatagctaagaagaaaatggtagctcagaga
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107996691 345 - 132174527 CA--CAAATCAGCAGGCATGAACATTTTCAAGAATAAATGTATCAAGACATGAAAGTACTGATAACTCAGTGCTATTTAAAG-TTTCCACttctaattctagctatgacaagttaatttgtatcaagccatcccacctggcaagaacaattatgaaagctggataaaattaattaaaaataagtagctattta-----agggcttccgatagcaatcaaagcatccagaacctgagagtctaagctcccagaaggaagagaaacacattgaagtgatttcaacattctccaccacctttcattttgatagatttgctgagcaaatagctaagaagaaaatggtagctcagaga
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58122186 319 - 182113224 ----TAAGTCAGTAGGCATGGACATTTTTGGGGA-ACATTTATTAGGACATTAAAAAATTGGTAACCCAGCACTGTTTGAAGTCTTTTGCTTGTCTTTCTAGCTATGACAATCTATTATAGACCAAGCCTTCTCATCTG--AAAAATAGCTTTAAA-------TAAAAAAAATTAAGAGACAGTAGCGTTTTAACTTTATGGACTAGGATAG------------------ATTGGGAATAAAATTTCTCAGAGAGAGGAGAAAGCTACTCTGTTGATTCTAACATTCTCCACAACATTTTACTT-GATACATTTG-TAAGCAGCCTCTCAAGAAGAAAGCAGAGGCTCAAAAA
i mm10.chr2                    C 0 I 1830
s canFam3.chr30                 26817914 343 -  40214260 CAAACAAAGCAGCACACATGGCTATTTTTAGGTAGAAATATATTACGACATGAAAGTACTAATAACTCAATGCTACCTAAAGTGTTCCACttctaattccagctatatcaaaataatttgtatcaagccattccacttggcaagaacaattatgaaatatggataaaattaattaaaaataaatagctattta-----aagacatcagataccaattaaagtattcggaac-tgaatatccaagctcccagatatgagagaaacacattaatgtgacttcagcattctccactccttttcattt-gatacatttgctgaGTAGGTAGTCAAGAAGAAA---GTGGCTCAATGG
i canFam3.chr30                I 216 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e micMur1.scaffold_110577            100 790 -      1465 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=348186.000000
s hg38.chr14_KI270725v1_random    164150 94 +    172810 tgttagaaatctggtaggcctgcatagac-aacaattgg-aattcatgactatcatggtggccagggcttgataaagggccggtagaaacaatgca
s panTro4.chrUn_GL393505          305388 94 +   1195001 ttttagaaatctgataggcctgcatagac-aaaaattgg-aattcatgactatcatggtggccagggcttgataaagggccagtagaaacaaaaca
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825690 94 + 158137892 ttttagaaatctggtaggcctgcatagac-aacaatggg-aattcatgactatcattgtggccagggtttggtaaagggccagtagaaacaatgta
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828873 94 +  72422247 ttttggaaatctgataggcctgcatagac-aaaaattgg-aattcaggactatcatggtggccagggcttgataaaGGGCCAGTAGAAACAAAACA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548741 94 + 121039945 ttttagaaatctgataggcctgcatagac-aaaaattag-aattcatgactatcatggtggccagggcttgataaaGGGCCAGTAGAAACAAAACG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888708 91 - 170124641 ttttagaaatctgataggcct---tagac-aaaaatggg-aattcatgactatcatggtggccagggcttgataaaggacctgtagaaataaaaca
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879063 91 - 171882078 ttttagaaatctgataggcct---tagac-aaaaatggg-aattcatgactatcatggtggccagggcttgataaaGGACCTGTAGAAATAAAACA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806109 91 - 162156779 TTTTAGAAATCTGATAGGCCT---TAGAC-AAAAATTGG-AATTCATGACTATCATGGTGGCCAGGGCTTGATAAAGGACCtgtagaaataaaaca
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194278 94 +  58131712 ttttagaaatctgatacgcctgcatagac-aaaaattgg-aattcaagactatcatggtggccagggcttgataaaGGGCCTGTAGAAATAAAACA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997036 94 - 132174527 ttttagaattcttgtatgtctgcatagacaaaaaattgg-aattcatgactatcatggtggccagggcttgataaaGGGCCAATAGAAACAAAAC-
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26818257 89 -  40214260 GTATGCAAATCTCATAAGTCTACATAGAC-AAAAATTTGCAGTTCTTGCCTACCTAGGTGAccagga---ggtaaggggccaatagaagggaa---
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e micMur1.scaffold_110577            100 790 -      1465 I
e tarSyr2.KE933570v1               97946 7045 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=1846.000000
s hg38.chr14_KI270725v1_random    164244 1 +    172810 a
s panTro4.chrUn_GL393505          305482 1 +   1195001 a
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825784 1 + 158137892 a
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828967 1 +  72422247 A
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548835 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888799 1 - 170124641 c
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879154 1 - 171882078 A
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806200 1 - 162156779 a
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194372 1 +  58131712 A
i chlSab2.chr26                C 0 C 0
s tarSyr2.KE933570v1              104991 1 +    145891 G
i tarSyr2.KE933570v1           I 7045 I 464
s canFam3.chr30                 26818346 1 -  40214260 a
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e micMur1.scaffold_110577            100 790 -      1465 I
e otoGar3.GL873530              36220345 3247 -  36342412 I
e calJac3.chr10                107997130 0 - 132174527 C

a score=554344.000000
s hg38.chr14_KI270725v1_random    164245 139 +    172810 ----tttcattttg------tttttccttcacagcattttctgattatttagctgcagaaggtgagcaactaagaagcttagcataaaatggagct-acctgactaaaaggaa--gttaagcagacctctcagcaaaagaatagacaaaatt
s panTro4.chrUn_GL393505          305483 139 +   1195001 ----tttcgttttg------tttttccttcacagcattttctgattctttagttgcagaaggtgaacaactaagaagcttagcataaaatggagct-atctgcctaaaaggag--gttaagcagacctctcagcaaaaggatagacaaaatt
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825785 139 + 158137892 ----tttcattttg------tttttccttcacagcattttctgattctttagttgcagaaggtaagcaactaagaagcttagcataaaatggagct-acccgactaaaaggaa--gttaagcagacctctcagcaaaaggatagacaaaatt
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5828968 139 +  72422247 ----TTTCGTTTTG------TTTTTCCTTCACAGTATTTTCTGATTCTTTAGTTGCAGAAAGTGAGCAACTAAGAAGCTTAGCATAAAATGGAGCT-ACCCGACTAAAAGgaa--gttaagcagacctctcagcaaaaggatagacaaaatt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548836 131 + 121039945 ----TTTCGTTTTG------TTTTTCCTTCCCAGCATTTTCTGAT--------TGCAGAAGGTGAGCAACTAAGAAGCTTAGCATAAAATGGAGCT-ACCcgactaaaaggaa--gttaagcagacctctcagcaaaaggatagacaaaatt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888800 139 - 170124641 ----tttcattttg------tttttcctttacagcattttctgatcctttagttgcagaaggtgagcgattaagaagcttagcataaaatggagct-acccgactaaaaggaa--gttaaacagacttctcagcaaaaggatagacaaaatt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879155 139 - 171882078 ----TTTCATTTTG------TTTTTCCTTTACAGCATTTTCTGATCCTTTAGTTGCAGAAGGTGAGCGATTAAGAAGCTTAGCATAAAATGGAGCT-ACCcgactaaaaggaa--gttaaacagacttctcagcaaaaggatagacaaaatt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806201 139 - 162156779 ----tttcattttg------tttttcctttacagCATTTTCTGATCCTTTAGTTGCAGAAGGTGAGTGATTAAGAAGCTTAGCATAAAATGGAGCT-ACCCAACTAAAAGGAA--GTTAAACAGACTTCTCAGCAAAAGGATAGACAAAATT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194373 139 +  58131712 ----TTTCTTTTTG------tttttccttcacagcattttctgatcctttagttgcagaaggtgagtgactaagaagcttagcataaaatggagct-acccgactaaaaggaa--gttaaacagacctctcagcaaaaggatagacaaaatt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997130 136 - 132174527 -------TATTTTG------tttttccgtccaagcattttccgattctttagttgcagaaggtgagtgactaagaagcttagcataaaatggagct-acccgactaagacaaa--attaagcagacctatcagcaaaaggatagacaaaatt
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26818347 133 -  40214260 ttgctgacattctgtatgacttctcccctcaaaactttttctgattccctagttgcagagggtgagagagtaagaaac-------aaaacagctctcaactgactaaaaaaaaaggtta------------agcaaaaggataggcaaaatt
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e micMur1.scaffold_110577            100 790 -      1465 I
e tarSyr2.KE933570v1              104992 464 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=3584.000000
s hg38.chr14_KI270725v1_random    164384  3 +    172810 -gga------
s panTro4.chrUn_GL393505          305622  3 +   1195001 -gga------
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825924  3 + 158137892 -gga------
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829107  3 +  72422247 -gga------
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548967  3 + 121039945 -aga------
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888939  3 - 170124641 -gga------
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879294  3 - 171882078 -gga------
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806340  3 - 162156779 -GGA------
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194512  3 +  58131712 -gga------
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997266  3 - 132174527 -gga------
i calJac3.chr10                C 0 C 0
s micMur1.scaffold_110577            890  2 -      1465 -gg-------
i micMur1.scaffold_110577      I 790 C 0
s canFam3.chr30                 26818480 10 -  40214260 tggtgttcca
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e tarSyr2.KE933570v1              104992 464 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=4360.000000
s hg38.chr14_KI270725v1_random    164387 3 +    172810 -ggt
s panTro4.chrUn_GL393505          305625 3 +   1195001 -gtt
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825927 3 + 158137892 -ggt
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829110 3 +  72422247 -att
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548970 3 + 121039945 -gtt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888942 3 - 170124641 -gtt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879297 3 - 171882078 -gtt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806343 3 - 162156779 -GTT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194515 3 +  58131712 -gtt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997269 3 - 132174527 -gtt
i calJac3.chr10                C 0 C 0
s tarSyr2.KE933570v1              105456 3 +    145891 -ggc
i tarSyr2.KE933570v1           I 464 I 152
s micMur1.scaffold_110577            892 3 -      1465 -ggt
i micMur1.scaffold_110577      C 0 C 0
s canFam3.chr30                 26818490 3 -  40214260 ggg-
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=5159.000000
s hg38.chr14_KI270725v1_random    164390 1 +    172810 c
s panTro4.chrUn_GL393505          305628 1 +   1195001 c
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825930 1 + 158137892 c
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829113 1 +  72422247 c
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548973 1 + 121039945 c
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888945 1 - 170124641 c
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879300 1 - 171882078 c
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806346 1 - 162156779 C
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194518 1 +  58131712 c
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997272 1 - 132174527 c
i calJac3.chr10                C 0 C 0
s micMur1.scaffold_110577            895 1 -      1465 t
i micMur1.scaffold_110577      C 0 N 0
s canFam3.chr30                 26818493 1 -  40214260 c
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e tarSyr2.KE933570v1              105459 152 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=179778.000000
s hg38.chr14_KI270725v1_random    164391 43 +    172810 -agcaaggaacagaggacctagaaatctccctagg--cattgggac
s panTro4.chrUn_GL393505          305629 43 +   1195001 -aacaaggaacagaggacctagaaatctccctagg--cattgagtc
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825931 43 + 158137892 -agcaaggaacagaggacctagaaatctccttagg--cattgggac
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829114 43 +  72422247 -aacaaggaacagaggacctagaaatctccctagg--cattgagac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53548974 43 + 121039945 -aacaaggaacagaggacctagaaatctccctagg--cattgagac
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888946 43 - 170124641 -aacaaggaacagaggacctagaaatctccctagg--cattgagac
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879301 43 - 171882078 -aacaaggaacagaggacctagaaatctccctagg--cattgagac
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806347 43 - 162156779 -AACAAGGAACAGAGGACCTAGAAATCTCCCTAGG--CATTGAGAC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194519 43 +  58131712 -aacaaggaacagaggacctagaaatctccctagg--caatgagac
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997273 43 - 132174527 -aacaaggaaccaaggacctagaaatctccctagg--cattgagac
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26818494 44 -  40214260 tgccaagaaa--gagggcctagggtgattcccaAGCCCATTAAGAT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e tarSyr2.KE933570v1              105459 152 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=390337.000000
s hg38.chr14_KI270725v1_random    164434 104 +    172810 ccctaaaaagctaatccctacctgaaaaggcaaactagaaattcaccagctgccacaaagactgaaatctagcctcaaggcatttcagtctgattggaccaaga
s panTro4.chrUn_GL393505          305672 104 +   1195001 ccctaaaaagctaatccctagctgaaaaggcaaactagaaatgcaccagctgccacaaaaactgaaatctagcctcaaggcatttcagtctgattggaccaaga
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58825974 104 + 158137892 ccctaaaaagctaatccctagctgaaaaggcaaactagaaattcaccagctgccacaaagactgaaatctagcctcatggcatttcagtctgattggaccaaga
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829157 104 +  72422247 ccctaaaaagctaatccgtagctgaaaacacaaactagaaatgcaccagctgccacaaaaactgaaatctagcctcaaggcatttcagtctgattggaccaaga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549017 104 + 121039945 ccctaaaaagataatccctagctgaaaaggcaaactagaaatgcaccagctgccacaaaaaccgaaatctagcctcaaagcatttcagtctgattggaccaaga
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145888989 103 - 170124641 ccct-acaagctaatccctagctgaaaaggcaaactaaaaatgcaccagctgccacaaaaactgaaatctagcctcaaggcatttcagtctgattgcaccaaga
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879344 103 - 171882078 ccct-acaagctaatccctagctgaaaaggcaaactaaaaatgcaccagctgccacaaaaactgaaatctagcctcaaggcatttcagtctgattgcaccaaga
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806390 103 - 162156779 CCCT-ACAAGCTAATCCCTAGCTGAAAAGGCAAACTAAAAATGCACCAGCTGCCACAAAAACTGAAATCTAGCCTCAAGGCATTTCAGTCTGATTGGACCAAGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194562 103 +  58131712 ccct-acaagcgaatccctagctgaaaaggcaaactaaaaatgcaccagctgccacaaaaactgaaacctagcctcaaagcatttcagtctgattgcgccaaga
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997316 104 - 132174527 ccctaaaaagctaatccctagctgaaaaggcaaactagaaatgcaccggctgccactaaaactgaaatctagcttcaaggcatttcagtctgattggaccaaga
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818538   0 -  40214260 C
e tarSyr2.KE933570v1              105459 152 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=-2026.000000
s hg38.chr14_KI270725v1_random    164538 1 +    172810 -t
s panTro4.chrUn_GL393505          305776 1 +   1195001 -g
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826078 1 + 158137892 -g
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829261 1 +  72422247 -g
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549121 1 + 121039945 -g
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889092 1 - 170124641 -g
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879447 1 - 171882078 -g
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806493 1 - 162156779 -G
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194665 1 +  58131712 -g
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997420 1 - 132174527 -g
i calJac3.chr10                C 0 C 0
s tarSyr2.KE933570v1              105611 1 +    145891 t-
i tarSyr2.KE933570v1           I 152 I 6901
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818538 0 -  40214260 C
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=746966.000000
s hg38.chr14_KI270725v1_random    164539 221 +    172810 gatctacctctaagccagaagaaaactacaatttctttggaggaagatcccatctaaagactttttctcttaggtcaatatctggcttttgatcataaataaccaggcgtatcagtc---------------------------------agcagggctaaatgaTGC-----ATGCACGCA--------CATGCGCGTGCACACACAAAC------------------------agagcgagagtgacagt--gagagggagaggagaAATCTATAACTTTAAATGTTCCCA
s panTro4.chrUn_GL393505          305777 221 +   1195001 gatctacctctaagccagaagaaaactacaatttctttggagggagatcccatctaaagactttttctcttaggtcaatgtctggcttttgatcataaataaccaggcatatcggtc---------------------------------agcagggctaaatgaTGC-----ATGCACACT--------CATGTGTATGCACACACAAAC------------------------AGAGTGAGAGTGACAGT--GAGAGGGAGAGGAGAAATCTGTAGCTTTGAATGTTTTCA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826079 221 + 158137892 gatctacctctaagccagaagaaaactacaatttctatggaggaagatcccatctaaagactttttctcttaggtcaatgtctggcttttgatcataaataaccaggcgtatcagTC---------------------------------AGCTGGGCTAAATGATGC-----ATGCACACA--------CATGCGTATGCACGCACAAAC------------------------AGAGCGAGAGTGACAGT--GAGAGGGAGAGGAGAAATCTATAGCTTTAAATGTTTCCA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829262 221 +  72422247 gatctacctctaagccagaagaaaactacaatttctttggagggagatcccatctaaagactttttctcttaggtcaacgtctggcttttgatcataaataaccaggcatatcagTC---------------------------------AGCGGGGCTAAATGAGGC-----ATGCACACA--------CATGTGCGTGCACACACAAAC------------------------AAAGTGAGAGTGACAAT--GAGAGGGAGAGGAGAAATCTATAGCTTTAAATGTTTCCA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549122 226 + 121039945 gatctacctctaagccagaagaaaactacaacttctttggagggagatcccatctaaagactttttctcttaggtcaatatctggcttttgatcataaataaccaggcatatcagtc---------------------------------agcagggctaaatgaTGCATGCAATGCACACA--------CATGCGCGTGCACACACACAC------------------------AAAAAGAGAGTGACAGT--GAGAGGGAGAGGAGAAATCTATAGCTTTAAATGTTTCCA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889093 278 - 170124641 gatctacctctaaaccataagaaaactacaacttctttggagggacatctcagctaaagactttgtctcttaggtaactgtctggtttttgatcataaataaccaggtatgtcagtcagcagggctaaatgaTGCATGCACATACATGAGAGCAGGGCTAAATGATGC-----ATGCACATA--------CGTGAGCGTGCACACGCACATACGTGAACGTGCACACGCACATACAGAGCGAGAGTGACGGG--GAGAGGGGGAGGAGAAATCTATAGCTTTAAATGTTTCCA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879448 245 - 171882078 gatctacctctaaaccataagaaaactacaacttctttggagggacatctcagctaaagactttgtctcttaggtaaatgtctggtttttgatcataaataaccaggtatgtcagtc---------------------------------agcagggctaaatgaTGc-----atgcacata--------cgtgagcgtgcacacgcacatacgtgaacgtgcacacgcacatacagagcgagagtgacggt--gagagggagaggagaAATCTATAGCTTTAAATGTTTCCA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806494 229 - 162156779 GATCTACCTCTAAACCGTAAGAAAACTACAACTTCTTTGGAGGGACATCTCAGCTAAAGACTTTGTCTCTTAGGTAAATGTCTGGTTTTTGATCATAAATAACCAGGTATATCAGTC---------------------------------AGCAGGGCTAAATGATGC-----ATGCACATA--------CGTGAGCGTGCACACGCACATACA-GAGCG---------------AGAGTGACagtgagagg--gagagggagaggagaaagctATAGCTTTAAATGTTTCCA
i papAnu2.chr7                 C 0 M 253
s chlSab2.chr26                 36194666 223 +  58131712 gatctacctctaaaccacaagaaaactacaacttctttggagggacatcccagctaaagactttttctcttaggtaaatgtctggtttttgatcataaataaccaggtatatcagtc---------------------------------agcagggctaaatgaTGC-----ATGCACATA--------CGTGAGCGTGCACACGCACATAC----------------------agagcgagagtgacagt--gagagggagaggagaAATCTATAGCTTTAAATGTTTCCA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997421 250 - 132174527 gatctggctctaagccagaagaaaattataacttctttggagggagatccaatctaaagacttttt-tcttaggtcagtgtgtggcttttgatcataaataacaaggcatatcagtc---------------------------------agcagggctaaatgaTGC-----ACGCACACATGTTCATGCATGTGCGTGcacgcacacacacacacatacatagacacac----aTAGTGAGAGTGACAGTGAGAGAGAGAGAGGAGAAATCTATAGCTTTAAATGTTTCCA
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818538   0 -  40214260 C
e tarSyr2.KE933570v1              105612 6901 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=13428.000000
s hg38.chr14_KI270725v1_random    164760 4 +    172810 TGTA
s panTro4.chrUn_GL393505          305998 4 +   1195001 TGTA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826300 4 + 158137892 TGTA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829483 4 +  72422247 TGTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549348 4 + 121039945 TGTA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889371 4 - 170124641 TGTA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879693 4 - 171882078 TGTA
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36194889 4 +  58131712 TGTA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997671 4 - 132174527 TGTA
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818538 0 -  40214260 C
e tarSyr2.KE933570v1              105612 6901 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I
e papAnu2.chr7                 140806723 253 - 162156779 M

a score=141322.000000
s hg38.chr14_KI270725v1_random    164764 37 +    172810 CAGAAAATAAAAATACTTCCAAATATATTTATGAATA
s panTro4.chrUn_GL393505          306002 37 +   1195001 CAGAAAATAAAAATACTTCCAAATATATTTATGAATA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826304 37 + 158137892 CAGAAAATAAAAATACTTCCAAATATATTTATGAATA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829487 37 +  72422247 CAGAAAATAAAAATACTTCCAAATATACTTATGAATA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549352 37 + 121039945 CAGAAAATAAAAATACTTCCAAATATATTTATGAATA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889375 37 - 170124641 CAGAAAATAAAAATACTTCCAAATATATTCATGAATA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879697 37 - 171882078 CAGAAAATAAAAATACTTCCAAATATATTCATGAATA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140806976 37 - 162156779 cagaaaataaaaatacttccaaatatattcatgaata
i papAnu2.chr7                 M 253 C 0
s chlSab2.chr26                 36194893 37 +  58131712 CAGAAAATAAAAATACTTCCAAATATATTTATGAATA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997675 36 - 132174527 TAGAAAATAAGAATACTTCCAAATATACTTATAAAT-
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9133055 1213 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818538  0 -  40214260 C
e tarSyr2.KE933570v1              105612 6901 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=17970.000000
s hg38.chr14_KI270725v1_random    164801 4 +    172810 AATA
s panTro4.chrUn_GL393505          306039 4 +   1195001 AATA
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9134268 4 -  12672142 aata
i panPan1.JH650621             I 1213 I 1754
s gorGor3.chr7                  58826341 4 + 158137892 AATA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829524 4 +  72422247 AATA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549389 4 + 121039945 AATA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889412 4 - 170124641 AATA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879734 4 - 171882078 AATA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140807013 4 - 162156779 aata
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194930 4 +  58131712 AATC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997711 4 - 132174527 AATA
i calJac3.chr10                C 0 C 0
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818538 0 -  40214260 C
e tarSyr2.KE933570v1              105612 6901 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=661007.000000
s hg38.chr14_KI270725v1_random    164805 178 +    172810 TTGTATTTATACTAAACTTGACCAAAGCTGAACATATGTGTTCTCTTCCCATCCCTTTCCCTTTGTCCCTCTCATATacactacacacaataaaatacaggcctattccactaataaatattactgcaaatattctatagctgtactttacaattaaaagttgcaatcccattaaaat
s panTro4.chrUn_GL393505          306043 178 +   1195001 TTGTATTTATAGTAAACTTGACCAAAGCTGAACACATGTGTTCTCTTCCCATCCCTTTCCCTTCGTCTCTCTCATATacactacacacaataaaatacaggcctattccactaataaatattactacaaatattctaaatctgtactttacaattaaaagttgcaatcccattaaaat
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826345 178 + 158137892 TTGTATTTATACTAAACTTGACCAAAGCTGAACACATGTGTTCTCTTCCCATCCCTTTCCCTTCGTCTCTCTCATATACACTACGCACAATaaaatacaggcctattccactaataaatattcctgcaaatattctaaagctgtactttacagttaaaagttgcaatcccattaaaat
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829528 176 +  72422247 TTGTATTTATACTAAACTGGACCAAAGCTGAACAC--GTGTTCTCTTCCCATCCCTTTCCCTTTGTCTCTCTCGTATacactacacacaataaaatacaggcctattccactaataaatattactgcaaatattctaaagctgtactttacaattaaaagttgtaatcccattaaaat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549393 178 + 121039945 TTGTATTTATACTAAACTTGACCAAAGCTGAACACATGTGTTCTCTTCCCATCCCTTTCCCTTCATCTCTCTCATATacattacacgcaataaaatacaggcctattccagtaataaatattaatgcaaatattctaaaaccatactttacaattaaaagttgcaatcacattaaaat
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889416 178 - 170124641 TTGTATTTATACTAAACTTGACTAAAGTTGAACCCATGTGTTCTCTTCCCATCCCCTTCCCTTCATCTCTCTCATATacactacacacaataaaatacaggcctatcccactaataaatattaatgcaaatattttaaaaccataccttacaattaaaagttgcaatcacattaaaat
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879738 178 - 171882078 TTGTATTTATACTAAACTTGACTAAAGTTGAACCCATGTGTTCTCTTCCCATCCCCTTCCCTTCATCTCTCTCATATACACTACACACAATAAAATACAGGCCTATCCCACTAATAAATATTAATGCAAATATTTTAAAACCATACCTTACAATTAAAAGTTGCAATCACATTAAAAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140807017 178 - 162156779 ttgtatttatacTAAACTTGACTAAAGTTGAACCCATGTGTTCTCTTCCCATCCCCTTCCCTTCATCTCTCTCATATACACTACACACAATAAAATACAGGCCTATCCCACtaataaatattaatgcaaatattttaaaaccataccTTACAATTAAAAGTTGCAATCACATTAAAAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36194934 178 +  58131712 TTGTATTTATACTAAACTTGACTAAAGTTGAACCCATGTGTTCTCTTCCCATCCCCTTCCCTTCATCTCTCTCATATACACTACACACAATaaaatacaggcctatcccactaataaatattaatgcaaatattttaaaaccataccttacaattaaaagttgcaatcacattaaaat
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997715 178 - 132174527 TTGTATTTATACTAAACTTGACCAAAGTTGAACACATGTGTTCTCTTCCCATTCCCTTACCTTCATCTCTCTTATATACATGACACACagtaaaatacaggcctataccactaataaatattaatgcaaatattctaaaaatgtattttataattcaaagttgcaatcacattaaaat
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818538   0 -  40214260 C
e tarSyr2.KE933570v1              105612 6901 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=777419.000000
s hg38.chr14_KI270725v1_random    164983 192 +    172810 catacttcataatcaagtagtgttcatgttagtaagcaagaatggatgactattaggaaatagtttactataatttatcatgttaat-------agaaaaaCAATA------ATCTCCAGAAACTTCAACATATATTACCAATTAAATAATATGAATAGAATAGTA-------------TTATAATGAGAT-------------------CGATGTAATTTAACCCAAAATTCAGAA
s panTro4.chrUn_GL393505          306221 192 +   1195001 cgtacttcataatcaagtagcgttcatgttagtaagcaagaatggatgactattaggaaatagtttactataatttatcatattaat-------agaaaaaCAATA------ATCTCCAGAAACTTCAACATATATTACCAATTAAATAATATTAATAGAATAGTA-------------TTATAATGAGAG-------------------AGATGTAATTTAATCCAAAATTCAGAA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826523 192 + 158137892 catacttcataatcaagtagtgctcatgttagtaaacaagaatggatgactattaggaaatagtttactataatttatcatgttaat-------agaaaaaCAATA------ATCTCCAGAAACTTCAACATATATTACCAATTAAATAATATTAATAGAATAGTA-------------TTATAATGAGAT-------------------AGATGTAATTTAACCCAAAATTCAGAA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829704 191 +  72422247 catacttcataatcaaggggtgttcatgttagtaagcaagaatggatgactattaggaaatagtttactataatttatcatgttaat-------agaaaaaCAATA------ATCTCCAGAAACTTCACAATATATTACCAATTAAAT-ATATTAATAGAAGAGTA-------------TTATAATGAGAT-------------------AGATGTAATTTAACCCAAAATTCAGAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549571 192 + 121039945 catacttcgtaatcaagtagtgttcatgttaataagcaagaatggatgaccattaggaaatagtttactataatttatcatgttaat-------agaaAAACAATA------ATCTCCAGAAACTTCAACATATATTACCAATTAAATAATATTAATAGAATAGTA-------------TTATAATGAGAT-------------------AGACGTAACTTAACCCAAAATTCAGAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889594 185 - 170124641 catacttcataatcaagtagtgttcatgttagtaagcaagaatggatgactgttaggaaatactttactat-atttatcatgttaat-------agaaaaaCAATA------ATCTCCAGAAACTTCAACATATATTACCAATTAAAT------AATAGAGTAGTA-------------TTATAATGAGAT-------------------AGATGTAATTTAACCCAAAATTCAGAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147879916 185 - 171882078 CATACTTCATAATCAAGTAGTGTTCATGTTAGTAAGCAAGAATGGATGACTGTTAGGAAATACTTTACTAT-ATTTATCATGTTAAT-------AGAAAAACAATA------ATCTCCAGAAACTTCAACATATATTACCAATTAAAT------AATAGAGTAGTA-------------TTATAATGAGAT-------------------AGATGTAATTTAACCCAAAATTCAGAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140807195 185 - 162156779 CATACTTCATAATCAAGTAGTGTTCATGTTAGTAAGCAAGAATGGATGACTGTTAGGAAATACTTTACTAT-ATTTATCATgttaat-------agaaaaacaata------atcTCCAGAAACTTCAACATATATTACCAATTAAAT------AATAGAGTAGTA-------------TTATAATGAGAT-------------------AGATGTAATTTAACGCAAAATTCAGAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36195112 186 +  58131712 catacttcataatcaagtagtgttcatgttagtaagcaagaatggatgactattaggaaatactttactataatttatcatgctaat-------agaaAAACAATA------ATCTCCAGAAACTTCAACATATATTACCAGTTAAAT------AATAGAGTAGTA-------------TTATAATGAGAT-------------------AGATGTAATTTAACCCAAAATTCAGAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107997893 190 - 132174527 catacttcataatcaagtagtgttcatattagtaagcaagaatggatgac--ttaggaaatactttattataatttatcatattaat-------aggaAAACAATA------ATCTTCAGAAACTTCAACATACATTACCAATTAAATAATTTTAATAGAATAGTA-------------TTATAATGAGAT-------------------AGATGTAATTTAACCTAAAATTCAGAA
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26818538 235 -  40214260 CATACTTCATTATCAGGTGGAAGTCATA--AGTAAGTGAGAATGGGTGACTATTAGGAAATACTTTATTGTCATTGACCATATTAATTCGTCAAAGGAAAATGATAGTGATCATTTTCAGAAACTTCAACCCTAATAACCCATTAAATGATCTTAGCAGAATGGCAAGaaataatatatagataataaaatagaaaataaaaacaataaaaGAAGTAATTTAACCCAAATTTCAGAA
i canFam3.chr30                C 0 I 4905
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e tarSyr2.KE933570v1              105612 6901 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=156765.000000
s hg38.chr14_KI270725v1_random    165175 41 +    172810 TTTatgtgatggtgtttgggtacagggcctttgggaagtaa
s panTro4.chrUn_GL393505          306413 41 +   1195001 TTTatgtgatggtgtttgggtacagggcctttgggaagtaa
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826715 41 + 158137892 TTTatgtgatggtgtttgggtacagggcctttgggaagtaa
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829895 41 +  72422247 TTTatgtgatggtgtttgggtacagggcctttgggaagtaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549763 41 + 121039945 TTTatgtgatggtgtttgggtacagggcctttgggaagtaa
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889779 41 - 170124641 TTTAGgtgatggtgtttgggtacagggcctttgggaagtaa
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147880101 41 - 171882078 TTTAGgtgatggtgttttggtacagggcctttgggaagtaa
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140807380 41 - 162156779 TTTAGGTGATGGTGTTTGGGTacagggcctttgggaagtaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36195298 41 +  58131712 TTTAGCtgatggtgtttgggtacagggcctttgggaagcaa
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107998083 41 - 132174527 TTTGtgtgttggtgtttggataggaggcctttgggaagtaa
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818773 4905 -  40214260 I
e tarSyr2.KE933570v1              105612 6901 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=58089.000000
s hg38.chr14_KI270725v1_random    165216 14 +    172810 caaagtttagatga
s panTro4.chrUn_GL393505          306454 14 +   1195001 caaggtttagatga
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826756 14 + 158137892 caaggtttagatga
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829936 14 +  72422247 caaggtttagatga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549804 14 + 121039945 caaggtttagatga
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889820 14 - 170124641 caaggtttagatga
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147880142 14 - 171882078 caaggtttagatga
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140807421 14 - 162156779 caAGGTTTAGATGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36195339 14 +  58131712 caaggtttagatga
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107998124 14 - 132174527 catggtttagaggg
i calJac3.chr10                C 0 C 0
s tarSyr2.KE933570v1              112513 14 +    145891 caaaattcatatgt
i tarSyr2.KE933570v1           I 6901 I 4503
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818773 4905 -  40214260 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=268532.000000
s hg38.chr14_KI270725v1_random    165230  96 +    172810 cgt----------------------------------------------------------------------------------------------catgagggcagggttctcatgatggaattagttcccttataacatagacaccagagagcttgc----------------------------------------------------------------------------------------------tc-------------------------------------------------tctttccctgcaatgtgaggacagagtg
s panTro4.chrUn_GL393505          306468  96 +   1195001 tgt----------------------------------------------------------------------------------------------catgagggcagggttctcatgatggaattagttcccctataacatagacagtagagagcttgc----------------------------------------------------------------------------------------------tc-------------------------------------------------tctttccctgcaatgtgaggacagagtg
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826770  96 + 158137892 cgt----------------------------------------------------------------------------------------------cataagggcaggattctcatgatggaattagttcccttataacatagacaccagagagcttgc----------------------------------------------------------------------------------------------tc-------------------------------------------------tctttccctgcaatgtgaggacagagtg
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5829950  96 +  72422247 tgt----------------------------------------------------------------------------------------------catcagggcagggttctcatgatggaattagttcccttgtaacatagacaccagagagcttgc----------------------------------------------------------------------------------------------tc-------------------------------------------------tctttccctgcaatgtgaggacagagtg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549818  96 + 121039945 tgt----------------------------------------------------------------------------------------------catgagggcagagttctcatgatggaattagttcccttataacatagacaccagagagcttga----------------------------------------------------------------------------------------------tg-------------------------------------------------tctttccctgcaatgtgaggacagagtg
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145889834 190 - 170124641 tgt----------------------------------------------------------------------------------------------catgagggtagggttctcatgacggaattaattctcttacaacatagacaccagagagcttgctctctttccctgcaatgtgaggacagagtgacatgagggtagggttctcatgatggaattaattctcttataacatagacaccagagagcttactc-------------------------------------------------tctttccctgcattgtgaggacagagtg
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147880156 190 - 171882078 tgt----------------------------------------------------------------------------------------------catgagggtagggttctcatgacggaattaattctcttacaacatagacaccagagagcttgctctctttccctgcaatgtgaggacagagtgacatgagggtagggttctcatgatggaattaattctcttataacatagacaccagagagcttactc-------------------------------------------------tctttccctgcattgtgaggacagagtg
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140807435 190 - 162156779 TGT----------------------------------------------------------------------------------------------CATGAGGGTAGGGTTCTCATGATGGAATTAATTCTCTTACAACatagacaccagagagcttgctctCTTTCCCTGCAATGTGAGGACAGAGTGACATGAGGGTAGGGT-------------------------------------------------TCTCATGATGGAATTAATTCTCTTAAAACATAGACACCAGAGAGCTTACTCTCTTTCCCTGCATTGTGAGGACAGAGTG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36195353 190 +  58131712 tgtcatgagggtagggttctcatgatggaattaattctcttacaacacagacaccagagagcttgctctctttccctgcaatgtgaggacacagtgacatgagggtagggttctcatgatggaattaattctcttataacacagacaccagagagcttgc----------------------------------------------------------------------------------------------tc-------------------------------------------------tctttccctgcaatgtgaggacagagtg
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107998138  93 - 132174527 tat----------------------------------------------------------------------------------------------catgaggcttgggctctcatgatgggattagttcccttataaca---acaccagagagcttgc----------------------------------------------------------------------------------------------tg-------------------------------------------------tctttccctgcaatgtgaggacaaagtg
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58122505 1830 - 182113224 I
e canFam3.chr30                 26818773 4905 -  40214260 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=565565.000000
s hg38.chr14_KI270725v1_random    165326 160 +    172810 agagaacttgactgtctgcaagagaacgctcaccagatagcaaacattcacaggtcctgatcttggactttccagcctccagatgtg-taagaaaatacatttctgttta---aaccactcagtctgtggtattttgtgatggcagttcgagcagactaagaca
s panTro4.chrUn_GL393505          306564 157 +   1195001 agagaatttgactgtctgcaagagaatgctcaccagatagcaa---ttcacagatcctgatcttggactttccagcctccagatgtg-taagaaaatacatttctgttta---aaccactcagtctgtggtattttgtgatggcagttcgagcagactaagaca
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58826866 160 + 158137892 agagaacttgactgtctgcaagagaacgctcaccagatagcaaacattggcagatcctgatcttggactttccagcctccagatgtg-taagaaaatacatttctgttta---aaccactccgtctgtggtattttgtgatggcagtttgagcagactaagaca
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5830046 160 +  72422247 agagaacttgactgtctgcaagagaacactcaccagatagcaaacattcacagatcctgatcttggactttccagcctccagatgtg-taagaaaatacatttctgttta---aaccactcagtctgtggtattttgtgatggcagttcaatcagactaggaca
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53549914 160 + 121039945 agagaacttgactgtttgcaagagaatgctcaccagatagcaaaccttcacagatcctgatcttggactttcaagcctccagatgtg-taagaaaatacatttctgttta---aaccactcagtctgtggtattttgtgatggcagttcaagctgactaagaca
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145890024 152 - 170124641 agagaacctgactgtctgtaagagaacgctcaccagatagcaaaccttcacagatcctgatcctgtactttccagcctccagatgtg-taagaaaatacatttctgtggt-----------attctgtggtattttgtgatggcagttggagcagactaagaca
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147880346 152 - 171882078 agagaacctgactgtctgtaagagaacgctcaccagatagcaaaccttcacagatcctgatcctgtactttccagcctccagatgtg-taagaaaatacatttctgtggt-----------attctgtggtattttgtgatggcagttcgagcagactaagaca
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140807625 152 - 162156779 AGAGAACCTGACTGTCTGTAAGAGAACGCTCACCAGATAGCAAACCTTCACAGATCCTGATCCTgtactttccagcctccagatgtg-taagaaaatacatttctgtggt-----------attctgtggtattttgtgatgACAGTTCGAGCAGACTAAGACA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36195543 159 +  58131712 agagaacttga----ctgtaagagaatgctcaccagatagcaaaccttcacagatcctgatcctgtactttccagcctccagatgtg-taagaaaatacatttctgttgtttaaaccactcagtctgtggtattttgtgatggcagttcgagcagactaagaca
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107998231 163 - 132174527 agataacttgactgtctgtaagagaacagtcaccgaataccaaaccttcacagctcttgatcttggactttccagcctccaggtgtg-taagaaaatacatttctgttgtttaaaccacgcagtgtgtgatatgttgtgatggcagtttgagcagactaagaca
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58124335 156 - 182113224 AGAGACCCTGGCTACCTTCa--ggaaggtctccctgaaaacacctcctttcacagccagaactcaggct-----ggctttagacctactgggaaaacaaatctttgatgtttaaactacccagtgcctggtcttctgtgacagtagcatgagctagctaaGAA-
i mm10.chr2                    I 1830 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26818773 4905 -  40214260 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=993621.000000
s hg38.chr14_KI270725v1_random    165486 241 +    172810 AATAATGACACCATTCATGATTGTTCCCATCTACCAGTCACCAAAACAAGTTCTAACAAGATTAAAAAATAAATTCCCCC-AAAACGTAAACTTAAAGCCTAAA-AATTAGAACAAATTGTAAATAAATATGAAAAATATAACTGGAGGCAATC-AAAAATATATAtatcctaaggagattgttaaagctatat-gaaaaatgtatgctacaaatctcattggagcactattcataaatctaaat
s panTro4.chrUn_GL393505          306721 241 +   1195001 AGTAATGACACCATTCATGATTGTTCCCATCTACCAGTCACCAAAACAAGTTTTAACAAGATTAAAGAATAAATTCCCCC-AAAAGGTAAACTTAAAGCCtaaa-aattataataaattgtaaataaagattaaaaatataGCTGGAGGCAATC-AAAAAAATATAtatcctaaggagattgttaaagctatat-gaaaaatgtaagctaaaaatctccttggagcactattcataaatctaaat
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58827026 241 + 158137892 AATAATGACAGCATTCATGATTGTTCCCATCTACCAGTCACCAAAACAAGTTCTAACAAGATTAAAAAATAAATTCCCCC-AAAACGTAAACTTAAAGCCTAAA-AATTAGAATAAATTGTAAATAAAGATTAAAAATATAACTGGAGGCAATC-AAAAATATATAtatcctaaggagattgttaaagctatat-gaaaaatatatgctacaaatctcattggagcactattcataaatctaaat
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5830206 241 +  72422247 AATAATGACACCATTCATGATTGTTCCCATCTACCAGTCACCAAAACAAGTTCTAAAAAGATTAAAGAATAAATTCCCCC-AAGAGATAAACTTAAAGCCTAAA-AATTAGAATAAATTGTAAATAAAGATTAAAAATATAACTGGAGGCCATC-AAAAAAATatatatcctaaggagattgttaaagctatat-gaaaaatgtatgctaaaaatctcattggagcactattcataaatctaaac
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53550074 237 + 121039945 AATAATGACACCATTCATGATTGTTCCCATCTACCAGTCACCAAAACAAGTTCTAACAAGATTAAAGAATAAATTCCCCC-AAAAGGTAAACTTGAAGCCTAAA-AATTAGAATACATTTTAAATAAAGATTAAAAATATAACTGGAGGCAATC-AAAAa---atatatcctaaggagattgttaaagctatat-gaaaaatgtatgctaaaaa-ctcattggagcactattcataaatctaaat
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145890176 238 - 170124641 AATAATGACATCATTCATGATTGTTCCCATCTACCAGACACCAAAACAAGTTCTAACAAGATCAAAGAATAAACTCCCCC-AAAAGGTAAGCTTAAAGCAGAAA-AAGTAGAATAAATTGTAAATAAAGATTAAAAATATAACCAGAGGCAATC-AAAAA---ATATATCCTAAGGAGATTGTTAAAGCTATAT-GAAAAATGTATGCCGAAAATCTCATTGGAGCACTATTCATAAATCTAAAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147880498 238 - 171882078 AATAATGACATCATTCATGATTGTTCCCATCTACCAGACACCAAAACAAGTTCTAACAAGATCAAAGAATAAACTCCCCC-AAAAGGTAAGCTTAAAGCAGAAA-AAGTAGAATAAATTGTAAATAAAGATTAAAAATATAACCAGAGGCAATA-AAAAa---atatatcctaaggagattgttaaagctatat-gaaaaatgtatgccgaaaatctcattggagcactattcataaatctaaat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140807777 238 - 162156779 AATAATGACATCATTCATGATTGTTCCCATCTACCAGACACCAAAACAAGTTCTAACAAGATCAAAGAATAAATTCCCCC-aaaaggtaagcttaaagcagaaa-aagtagaataaattgtaaataaagattaaaaatataaccagaggcaatc-aaaaa---atataTCCTAAGGAGATTGTTAAAGCTATAT-GAAAAATGTATGCCAAAAATCTCATTGGAGCACTATTCATAAatctaaat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36195702 239 +  58131712 AATAATGACACCATTCATGATTGTTCCCATCTACCAGACACCAAAACAAGTTCTAACAAGATGAAAGAAAAAACTCCCCC-AAAAGGTAAGCTTAAAGCAGAAA-AAGTAGAATACATTGTAAATAAAGATTAAAAATATAACTGGAGGCAATCAAaaaa---atatatcctaaggagattgttaaagctatat-gaaaaatgtatgccgaaaatctcattggaacactattcataaatctaaat
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107998394 229 - 132174527 AATAATGACACCATCCATGATTGTTCCCATCCACCAGATACCCAAGC----------AATATTAAAGAATAAGTTCCCCCAAAAAGGTAAACTTAAAGCATAAA-AATTAGAACAAATTGTAAATAAAGATTAAAAATATAATTGGAGGCAAtc-aaaaa---atatatcctaaggagattattaaagatatat-gaaaaatgaatgctaaaaacttcattgcagcactattcatagatctaaat
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58124491 206 - 182113224 ---AATGACACAAATC-TGCATATT---------------CTAAAAC----TCAGACAGCACTGAAGACCAAAA-CTCCC-ATAAAGCAAG-TTAAAACGTAAG-AATTAGAAAACGTCATCAATGAAAAATTA----ACAACTACAGGCAATT-AAAGA---A-GTATTGCCAGGAGAATGTAAAAGATCTGTCTTAAAATGTTTGCTAACA---CCATTGCAGCAACTTTCAGGCACCAGAAG
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26823678 236 -  40214260 AACCATGACAGAAAATCTGTTTTTTACTTTCAGCCTAACACCCAAACAAATATCAATAGGATTAAAGAATAAATCTCCCC-AAAACCTAAACTTAAAGCATAAAGAATTAGAA----TTGTAAATGAAGATTCACAGTGTAATTTGAGGCAATC-AAagaa--atatatcctaaggaaattattggatttatat-taaaaatgtatgctaaagttctcattgtagcactattcataaatctaaaa
i canFam3.chr30                I 4905 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=469877.000000
s hg38.chr14_KI270725v1_random    165727 139 +    172810 aattgtaaataataactgggctatggttatgttgattatggtaaatctatatatgttaacataatgtggtaatttgtaaatgtttataaagcattctt--gtatattagcaaaacaatttgaagtgtcaaattaaaaatcc
s panTro4.chrUn_GL393505          306962 139 +   1195001 aattgtaaataataactgggctatggttatgttgattatggtaaatccatatatgttaacataatgtggtaatttgtaaatgtttataaagcattctt--gtatattagcaaaacaatatgaagtgtcaaattaaaaatcc
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58827267 139 + 158137892 aattgtaaataataactgggctatggttatgttgattatggtaaatccatatatgttaacataatgtggtaatttgtaaatgtttataaagcattctt--gtgtattagcaaaacaatttgaagtgtcaaattcaaaatcc
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5830447 139 +  72422247 aattgtaaataataactgggctatggttatgttgattatggtaaatccatatatgttaacataacgtggtaatttgtaaatgtttataaagcattctt--gtatattagcaaaacaatttgaagtgtcaaattaaaaatcc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53550311 140 + 121039945 aattataaataataactgggctatggttatgttgattaaggtaaatccatatatgttcacataatgtggtaatttgtaaatgtttataaagcattgtta-gtatattagcaaaacaatttgaagtgtcaaattaaaaatcc
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147880736 137 - 171882078 aattata---aataactgggctatggttatgttgattatggtaaatccatatatgttaacataatgtgttaatttgtaaatgtttataaagcattctta-atatattagcaaaacagtttgaagtgtcaaattaaatatcc
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140808015 137 - 162156779 aattata---aataactgGGCTATGGTTATGTTGATTATGGTAAATCCATATATGTTAACATAATGTGttaatttgtaaatgtttataaagCATTCTTA-ATATATTAGCAAAACAGTTTGAAGTGTCAAATTAAATATCC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36195941 137 +  58131712 aattaca---aataactgggctatggttatgttgattatggtaaatccatatctgttaacataatgtgttaatttgtaaatgtttataaagcattctta-atatattagcaaaacagtttgaagtgtcaaattaaataccc
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107998623 118 - 132174527 aattataaataataactgagctatggttatattgattatggtaaatccatataT-TTAACATAATGTGGTAATT------TGTTTTTAAAGCATTCTTA-GTATATTAGCAAAACATTT------------TTAAAAA---
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58124697 135 - 182113224 CATTTTAAGTGACAATT--GTTCTGGTTATATTGATATTGGTACAGCCATAGATTTTAAGATAATGCAATAATTTA-AAACATTTATGAAGCACATTTAGGTGTATAAGGAAA--AGTTTAATGTGTCAAATAAAAATTC-
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26823914 140 -  40214260 agttaaacacagtgattgtgttatggttatgttgattatggtatattcatatcttggaacataatgtgatcattttttaaagtttctaaggcattttta-gtaaattagaaaaattttttgatgtgtcaaattaaaaattc
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e rheMac3.chr7                 145890414   0 - 170124641 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=2516048.000000
s hg38.chr14_KI270725v1_random    165866 607 +    172810 tgaatacaaaattacatgtaagttataattccaagtatgtttgaaaaattgcataCCAAAATAATGGAAGTAAATGCAACAAACTATTCATAGTAGAATTTTATTTTACAGCAACTCAAAATAATGAAACAAATCCTCTG----------------------------------------------------------GCTTAC--------------------------------------------------------------AAC-----TTTCAACTAGGTATTGTGA-TTTTCTTACTATTCCATTCAGCAGGATATAGGTAGCATGGTTGTAT-TCTCAGTTTGTCAGtgttctcctgg--catcattattaatagtgtccctatcactttcacaagtttcctagtttgcagaataaat------------------tatatggttatc-TGAGATATGGGAA------ACCTAATTTTCTTCCTTCTTCCCCAGTAATA-------------ATctatacaattctggacaactcacctatccataaaacaatttgatccgtaccttaaaatagata---tatctctgctagttaatttcatagaaatattgtaaggattaatgaggagatgcttggaaaacactttCAG-----CTCATCAGAGAAAAGTGCT-----ATGATATTGCCACTAATAAATTTATTTACTAGCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTTTGTAGGTATCAGCAACAAAACCAAATCAATCAT
s panTro4.chrUn_GL393505          307101 607 +   1195001 tgaatacaaaattacatgtaagttataattccaagtatgtttaaaaaattacatatTAAAATAATGGAAGTAAACGCAACAAACTATTCATAATAGAATTTTATTTTACAGCAACTCAAAATATTGAAACAAATCCTCTG----------------------------------------------------------GCTTAC--------------------------------------------------------------AAC-----ATTCAACTAGGTATTGTGA-TTTTCTTAATATTCCATTCAGTAGGATATAGGTGGCATGGTTGTAT-tctcagtttgtcattgttctcctgg--catcattattaatagtgtccctatcactttcacaagtttcctagtttgcagaataaat------------------tatatggttatc-TGAGATATGGGAA------ACCTAATTTTCTTCCTTCTTCCCCAGTAATA-------------ATATACACAATTCtggacaactcacctatccattaaacaatttgatctctaccttaaaatagata---tatctctgctagttaacttcatagaaatattgtaaggattaatgaggagatgcttggaaaatactttgag-----ctcatcagagaaaagtgct-----atGATATTGCCACTAATAAATTTATTTACTAGCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTTTGTGGGTATCAGCGACAAAACCAAATCAATCAT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58827406 608 + 158137892 tgaatacaaaattacatgtaagttataattccaagtatgtttgaaaaattacataCCAAAATAATGGAAGTAAACGCAACAAACTATTCATAGTAGAATTTTATTTTACAGCAACTCAAAATAATGAAACAAATCCTCTG----------------------------------------------------------GCTTAC--------------------------------------------------------------AAC-----TTTCAACTGGGTGTTGTGATTTTTCTTACTATTCTATTCAGCAGGATACAGGTAGCATGGTTGTAT-TCTCAGCTTGTCAGtgttctcctgg--catcattattaatagtgtccctatcactttcacaagtttcctagtttgcagaataaat------------------tatatggttatc-TGAGATATGGGAA------ACCTAATTTTCTTCCTTCTTCCCCAGTAATA-------------ATctatacaattctggacaactcacctatccataaaacaatttgatctgtaccttaaaatagata---tatctctgctagttaacttcgtagaaatattgtaaggattaatgaggagatgcttggaaaatactttgag-----cacatcagagaaaagtgct-----atGATATTGCCACTAATAAATTTATTTACTAGCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTTTGTGGGTATCAGCGACAAAACCAAATCAATCAC
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5830586 605 +  72422247 tgaatacaaaattacatgtaagttataattccaagtatgtttgaaaaattacatattaaaATAATGGAAGTAAATGCAACAAACTATTTATAGTAGAATTTTATTTTACAGCAACTCAAAATAATGAAACAAATCCTCTG----------------------------------------------------------GCTTAC--------------------------------------------------------------AAC-----TTTCAACTAGGTATTGTGA-TTTTCTTACTATTCCATTCAGTAAGATATAGGTAGCATGGTTGTAC-TCT--GTTTGTCAGtgttctcctgg--catcattattcatagtgtccctatcactttcacaagtttcctagtttgcagaataaat------------------tatatggttatc-TGAGATATGGGAA------ACCTAATTTTCTTCCTTCTTCCCCAGTGATA-------------ATctatataattctggacaactcacctatccataaaacaatttgatctctaccttaaaatagata---tatctctgctagttaacttcatagaaatattgtaaggattaatgaggagatgcttggaaaatactttgag-----ctcatcagagaaaagtgct-----atGATATTGCCACTAATACATTTATTTACTAGCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTTTGTGGGTATCAGCTACAAAACTAAATCAATCAC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53550451 604 + 121039945 tgaatacaaaattacatgtaagttataattccaagtatgtttgaaaaattacatatTAAAA-AATGGAAGTAAATGCAACAAACTATTTGT--TAGAATTTTATTTTACAGCAACTCAAAATAATGAAACAAATCCTTTG----------------------------------------------------------GTTTAC--------------------------------------------------------------AAC-----ATTCAACTAGGCATTGTGA-TTTTCTTACTATTCCATTCAGTAGGATATAGGTAGCATGGTTGTAT-TCTCAGTTTGTCAGtgttctcctgg--catcattattaatagtgtccctatcactttcacaagtttcctagtttgcagaataaat------------------tatatggttatc-cGAGATATGGGAA------ACCTAATTTTCTTCCTTCTTCCCCAGTAATA-------------ATctatacaattctggacaactcacctatccataaaacaatttgatctctaccttaaaatagata---tatatctgctagttaacgtcatagaaatattgtaaggattaataaggagatgcttggaaaatacttagag-----ctcatcacagaaaagtgct-----atGATATTGCCACTAATAAATTTATTTACTAGCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTTTGTGGGTATCAGCAACAAAACCAAATCAATCAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145890414 601 - 170124641 TGAATACAAAATTACATGTAAGTTATAATTGCAAGTATTTTTGAAAAATTACATATTAAAAGAATGGAAGTAAATGCAACAAACTATTCGTAGTAGAATTTTATTTTACAACAACTCAAAATAATG----AAATCCTTTG----------------------------------------------------------GCTTAC--------------------------------------------------------------AAC-----TTTCAATTAGGCATTGTGA-TTTTCTTACTCTTCCATTCAGTAGCATATAGGTAGCATGGTTGTAT-CTTCAGTTTCTCAGtgttctcctgg--catcattattaatagtgtccccatcactttcataagtttcctagtttgcagaataaat------------------tatatggttatc-TGAGATATGGGAA------GCCTAATTTTCTTCTTTCTTCCCCAGTAATA-------------ATctatacaattctggacaactcacatatccacaaaagaatttgatctctaccttaaaatagata---tatctc--ccagttaacgtcatagaaatattgtaaggattaatgaggagatgcttggaaaatactttgag-----ctcatcagagaaaagtgct-----atGATATTGTCACTAATTCATTTATTTACTAGCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTTTGTGGGTATCAGCAACAAAACCAAATCAATCAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147880873 601 - 171882078 tgaatacaaaattacatgtaagttataattgcaagtatttttgaaaaattacatatTAAAAGAATGGAAGTAAATGCAACAAACTATTCGTAGTAGAATTTTATTTTACAACAACTCAAAATAACG----AAATCCTTTG----------------------------------------------------------GCTTAC--------------------------------------------------------------AAC-----TTTCAATTAGGCATTGTGA-TTTTCTTACTCTTCCATTCAGTAGCATATAGGTAGCATGGTTGTAT-CTTCAGTTTCTCAGtgttctcctgg--catcattattaatagtgtccccatcactttcataagtttcctagtttgcagaataaat------------------tatatggttatc-TGAGATATGGGAA------GCCTAATTTTCTTCTTTCTTCCCCAGTAATA-------------ATCTATACAATTCTGGACAACTCACATATCCATAAAAGAATTTGATCTCTACCTTAAAATAGATA---TATCTC--CCAGTTAACGTCATAGAAATATTGTAAGGATTAATGAGGAGATGCTTGGAAAATACTTTGAG-----CTCATCAGAGAAAAGTGCT-----ATGATATTGTCACTAATACATTTATTTACTAGCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTTTGTGGGTATCAGCAACAAAACCAAATCAAGCAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140808152 606 - 162156779 TGAATACAAAATTACATGTAAGTTATAATTGcaagtatttttgaaaaattacatattaaaagAATGGAAGTAAATGCAACAAACTATTCgtagtagaattttattttacaacaactcaaaataatg----aaatcctttG----------------------------------------------------------GCTTAC--------------------------------------------------------------AAC-----TTTCAACTAGGCATTGTGA-TTTTCTTACTCTTCCATTCAGTAGCATATAGGTAGCATGGTTGTAT-CTTCAGTTTCTCAGTGTTCTCCTGG--CATCATTATTAATAGTGTCCCCATCACTTTCATAAGTTTCCTAGTTTGCAGAATAAAT------------------TATATGGTTATC-TGAGATATGGGAA------gcctaattttcttcttctttccccagTAATA-------------ATCTATACAATTCTGGACAACTCACATATCCATAAAAGAATTTGATCTCTACCTTAAAATAGATA---TATCTC--CCAGTTAACGTCATAGAAAGATTGTAAGGATTAATGAGGAGATGCTtggaaaatactttgagaaaGTATTTTCAGAGAAAAGTGCT-----ATGATATTGTCactaatacatttatttactagCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTTTGTGGGTATCAGCAACAAAACCAAATCAATCAT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36196078 605 +  58131712 tgaatacaaaattacttgtaagttgtaattccaagtatttttgaaaaattacatattaaaAGAATGGAAGTAAATGCAACCAACTATTTGTAGTAGAATTTTATTTTACAACAACTCAAAATAATGAAACAAATCCTTTG----------------------------------------------------------GCTTAC--------------------------------------------------------------AAC-----TTTCAAGTAGGCATTGTGA-TTTTCTTACTATTCCATTCAGTAGCATATAGGTAGCATGGTTGTAT-CCTCAGTTTCTCAGtgttctcctgg--catcattattaatagtgtccctatcactttcataagtttcctagtttgcagaataaat------------------tatatggttatc-TGAGATATGGGAA------GCCTAATTTTCTTCTTTCTTCCCCAGTAATA-------------ATCTATACAATTCTGGACAACTCATATATCCATAAAAAAATTTGATCTCTACCTTAAAATAGATA---TATCTC--CCAGTTAACATCATAGAAAGATTGTAAGGATTAATGAGGAGATGCTTGGAAAATACTTTGAG-----CTCATCAGAGAAAAGTGCT-----ATGATATTGTCACTAATACATTTATTTAGTAGCTTGCTGAGTAGAAAGTCAAGGGAAATCAAGATTCTGTGGGTATCAGCAACAAAACCAAATCAATCAT
i chlSab2.chr26                C 0 I 42
s calJac3.chr10                107998741 558 - 132174527 -------------------------------------------------TACATATTAAAAGAATGAAAGTAAATGCAACAAACTATTTGCAGTAGAATTTTGTTTAACAGCAACTAGAACTAATGAAACAAATCCTTGA----------------------------------------------------------GCTTAC--------------------------------------------------------------AGC-----TTTCAACTGGGCATTGTGA-TTTTCTTACTATTTCATTCAGTAGTATATAGGTAGCATGGCTGTAT-tctcagtttgtgaatattttcctgg--cataattattaatagtgcctctatagctttcacaagttttctagtttgcagaataaat------------------tatatTGGTATC-TCAGACATgggaa------acctaattttcttccttcttctccagtaaca-------------agttatacaattctggacaactcacctattcacaaaagaatttggtctctaccttaaaatagata---tatctctgctggctaacttcatagaaatgttgtaaggattaatgaggagatacttggaaaatagtttgAG-----CTCATCAGAGAAAAGCGCT-----ATGATATTGCCACTAATACCTTTATTTAATAGCTTGCTGAGTAGAAAGTTGAGGGAAATCAAAATTTTGTGAGTATCAGCAACAAAACCAAATCAATCGT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58124832 628 - 182113224 TGGATACTAAATAATTTGCAAGGCATGCTACTAAGGGCATTTGGAATATTATGTAGCAAAATACTAAAAT--AATTCAGCAAACTCTTAGTTCTAGATTTTTCTTTCCAAGAAGTT----GTAATGATACAAATCTATTGTGTCCTATTTATTTTCATTCAGGGATTGTTAACATGAGTAAATTTGATAATTTTGTGTTCTTAA--------------------------------------------------------------ATCATTGATTTCAACAAGAAACTATGA-TTTGGATATTGTTATCTTAAGAGAGACATAGGTAGGGTG-----AA-CCTAAGTATCTGTTTGTGATCATTGACCATAATTTCTGATATAGAATCTTTCATTTTCATAGTTTTCCAAGTTTAAAGAAACAATTATTTATATTACCTATTATATGTAGTTATAGTTAAATATATGAATGAAACCCCTGATTCTTTTGCTTTT----CAATTTtgtgtgtgtgtgtgtgtgtgCATATATATAGGCAGATCTTCTGTCTGTGGAAAATTTTGATC--TATTGCAATGTAGACA---AAACCT---------------------GACTGTA-------------AGATGCTT-------------AA-----CTCCTCAGAGGACAGTGATCCCACATTAGATCGTCCC------ATTCTTGTCCTAGC-----------------AAGGGAAATCAAGGTTTTATAAGGCTCAGCAGAGAGACCAAATAAGTCTT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26824054 660 -  40214260 tggatacttaattacatataaagtataatttcaactattttctgaaaaatgcatGGTACAGGACTAAAAGTAAATGCAGC-AGCTCTTAGTAGTAGAATTCTATTTTATAATAGT--GAAATAATGAAGCAAGTCCTTTG----------------------------------------------------------ACTTACTATTTATGTTCTTACACATTTTCTCTTTACCAATACATTCAATATTTATGGCTTAAACCAATGAC-----TTCCTACTAGGCATTGTGG-CTTTGTCGCTATTCCATTCAGTGGGCTATAGGTAGAGTGTCTGTATGTTTCAGCTTCTGActattgtcctgg--cataattattaatagtgcccttttcactttaata-gtgccctagtttggacaatgaat------------------tatatggttatc-cAAGATATgggaa------acctgattctcatcctgtttatccattgaaa-------------acctacaaaattcgggatacatcatctatccatgagagattttcatccctgccctaaaatagaaatagtatctctgctggttaacttcataggaatgctttgaggattaatg---------ttggaaaatactttgag-----ctcctcagagaaaagtgct-----atGATATTGTTACTGTTATATTTCTCTACTAGCTTGCCATATGGGAAGTCAGGGGAAATCAAGATTTTGCAAGTATCAGCAACGAAACCAGATCAATCAA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=42517.000000
s hg38.chr14_KI270725v1_random    166473 11 +    172810 CCATGTTCTGG
s panTro4.chrUn_GL393505          307708 11 +   1195001 GCATGTTCTGG
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828014 11 + 158137892 CCATGTTCTGG
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5831191 11 +  72422247 ACATGTTCTGG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551055 11 + 121039945 GCATGTTCTGG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891015 11 - 170124641 GCACGTTCTAG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147881474 11 - 171882078 GCACGTTCTAG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140808758 11 - 162156779 GCACGTTCTAG
i papAnu2.chr7                 C 0 C 0
s calJac3.chr10                107999299 11 - 132174527 GCATGTTCTGA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58125460 11 - 182113224 ACATGCTCTGA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26824714 11 -  40214260 GCATGTTCTGG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I
e chlSab2.chr26                 36196683 42 +  58131712 I

a score=261803.000000
s hg38.chr14_KI270725v1_random    166484 74 +    172810 CAGCCTATTTTATATAAGTTCCCCAGAGT-ACAGTAGCTAGTGAACATAGAACTTCTCCAAAGAAAAAAAAATAT
s panTro4.chrUn_GL393505          307719 71 +   1195001 CAACCCATTTTATATAAGTTCCCCAGAGT-ACAGTAGCTAGTTAACATAGAACTTCTCCaaa---aaaaatataa
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828025 71 + 158137892 CAGCCCATTTTATATAAGTTCCCCAGAGT-TCAGTAGCTAGTGAACATAGAACTTTTCCAAA---AAAAAAatat
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5831202 73 +  72422247 CAGCCCA-TTTAGATAAGTTCCCCAGAGT-ACAGTAGCTAGTGAACATAGAACTTCTCCAAAAAAAAAAatatat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551066 66 + 121039945 CAGCCCATTTTATATAAGTTCCCCAGAGT-ACAGTAGCTAGTGAACATAGAACTTCTCCAAA--------TATAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891026 74 - 170124641 CAGCCCATTTTATGTAAGTTCCACAGAGT-ACAGTAGCTAGTGAACATAGAACTTCTCCAAatacatacatatat
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147881485 74 - 171882078 CAGCCCATTTTATGTAAGTTCCACAGAGT-ACAGTAGCTAGTGAACATAGAACTTCTCCAAatacatacatatat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140808769 74 - 162156779 CAGCCCATTTTATGTAAGTTCCCCAGAGT-ACAGTAGCTAGTGAACATAGAACTTCtccaaatacatacatacat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36196725 74 +  58131712 CAGCCCATTTTATGTAAGTTCCCCAGAGT-ACAGTAGCTAGTGAACATAGAACTTCTCCAAatacatatatatat
i chlSab2.chr26                I 42 I 10
s calJac3.chr10                107999310 62 - 132174527 TAGCCCATTTTATGTAAGTTGCCCAGAGT-ACAGTAGCTAGTAAAC--AGAACTTCTACAAA--------TAT--
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58125471 63 - 182113224 CAGTCCATATTCCATAAATGCCCCAGAGTCACAGT--CAAGTGGAC----------TCCAAATTCTCAAATGTAC
i mm10.chr2                    C 0 I 8
s canFam3.chr30                 26824725 59 -  40214260 CAGCACATTTTATACAAGTGCCCCAGAGT-ATGAGATCTAGTGAACCTAAAATTCCTCCA---------------
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=12128.000000
s hg38.chr14_KI270725v1_random    166558 4 +    172810 ATAT
s panTro4.chrUn_GL393505          307790 4 +   1195001 atat
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828096 4 + 158137892 atat
i gorGor3.chr7                 C 0 I 2
s ponAbe2.chrUn                  5831275 4 +  72422247 atat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551132 4 + 121039945 ATAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891100 4 - 170124641 atat
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147881559 4 - 171882078 atat
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140808843 4 - 162156779 acat
i papAnu2.chr7                 C 0 C 0
s calJac3.chr10                107999372 4 - 132174527 ATAT
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9134272 1754 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58125534 8 - 182113224 I
e canFam3.chr30                 26824784 0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I
e chlSab2.chr26                 36196799 10 +  58131712 I

a score=14902.000000
s hg38.chr14_KI270725v1_random    166562 6 +    172810 ATATAT
s panTro4.chrUn_GL393505          307794 6 +   1195001 atatat
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9136026 6 -  12672142 atatat
i panPan1.JH650621             I 1754 I 1616
s gorGor3.chr7                  58828102 6 + 158137892 atatat
i gorGor3.chr7                 I 2 C 0
s ponAbe2.chrUn                  5831279 6 +  72422247 atatat
i ponAbe2.chrUn                C 0 I 4
s nomLeu3.chr6                  53551136 6 + 121039945 ATATAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891104 6 - 170124641 atatat
i rheMac3.chr7                 C 0 I 8
s macFas5.chr7                 147881563 6 - 171882078 atataa
i macFas5.chr7                 C 0 I 8
s papAnu2.chr7                 140808847 6 - 162156779 atatat
i papAnu2.chr7                 C 0 I 7
s calJac3.chr10                107999376 2 - 132174527 --AT--
i calJac3.chr10                C 0 C 0
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58125534 8 - 182113224 I
e canFam3.chr30                 26824784 0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I
e chlSab2.chr26                 36196799 10 +  58131712 I

a score=48107.000000
s hg38.chr14_KI270725v1_random    166568 42 +    172810 GAACATAAAACTTCTCCatatatatg---tatatata---------------------tatatata
s panTro4.chrUn_GL393505          307800 26 +   1195001 GAACATATAACTTCTCCatatatata----------------------------------------
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828108 23 + 158137892 gaacgtagaacttctccatatat-------------------------------------------
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5831289 45 +  72422247 gaacatagaacttctccacatatata---tatatata------------------atctatatcta
i ponAbe2.chrUn                I 4 C 0
s nomLeu3.chr6                  53551142 48 + 121039945 GAACATAGAACTTCTCCatatatatattttatatatg------------------atatatatata
i nomLeu3.chr6                 C 0 I 3
s rheMac3.chr7                 145891118 42 - 170124641 GAACATAGAACTTCTCCAAatacata---tatatata---------------------tataaata
i rheMac3.chr7                 I 8 I 45
s macFas5.chr7                 147881577 42 - 171882078 gaacatagaacttctccaaatacata---tatatata---------------------tataaata
i macFas5.chr7                 I 8 I 22
s papAnu2.chr7                 140808860 63 - 162156779 taacatagaacttctccaaatacata---tatatataaaacatagaacatagaacttctccaaata
i papAnu2.chr7                 I 7 I 42
s chlSab2.chr26                 36196809 42 +  58131712 ggacatagaacttctccaaatacata---tatatata---------------------tatataaa
i chlSab2.chr26                I 10 I 24
s canFam3.chr30                 26824784 12 -  40214260 -AACATACAAATT-----------------------------------------------------
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58125534  8 - 182113224 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I
e calJac3.chr10                107999378  0 - 132174527 C

a score=-1674.000000
s hg38.chr14_KI270725v1_random    166610 26 +    172810 tatatatatatataAAATTAGAAAAA
s panTro4.chrUn_GL393505          307826 24 +   1195001 -atat-tatatataatattagaaaaa
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828131 25 + 158137892 -atatatatacatataATTAGAAAAA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5831334 26 +  72422247 tatatatgtacataAAATTACAAAAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551193 21 + 121039945 tatatatatatatata-----tataA
i nomLeu3.chr6                 I 3 C 0
s macFas5.chr7                 147881641 23 - 171882078 tacatacatatatatgtatatta---
i macFas5.chr7                 I 22 C 0
s papAnu2.chr7                 140808965 23 - 162156779 tacatacatatatatgtatatta---
i papAnu2.chr7                 I 42 C 0
s chlSab2.chr26                 36196875 20 +  58131712 tacatacatatatatatata------
i chlSab2.chr26                I 24 C 0
s calJac3.chr10                107999378  2 - 132174527 ------------------------AA
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26824796  1 -  40214260 -------------A------------
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58125534  8 - 182113224 I
e rheMac3.chr7                 145891160 45 - 170124641 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=1642575.000000
s hg38.chr14_KI270725v1_random    166636 344 +    172810 TTAGAGACACATAGGCTAAATTTTGACTCTATATAGGCTATTCAGTTAGCAGTTATGAGTAAATGTATTGAACTTCTCTTTCTTAGTGAAAATATTATGTTAGTTCAAGCACTGACCATATGGAATGTTTGGAAGTTGAACAAAGACTGTTCATT--AAGCTTGAAAGGGACAGATCTGAGCCAGCC-TGCACTTTGTAAC-TGGCAGTCAGGCCTCAAAATCAAGCCTATTATTTTAGTAGGCCAATTAAGTTTTTTAGAAACTCAGTGGAAAGGTGGCATCTTC---AC---ACATTTTCAGCACCTTATAAATTAGGTACTTTTGCCTGGTACTAAAATATCCTTCTTGAA
s panTro4.chrUn_GL393505          307850 344 +   1195001 ttaGAGACACATAGGCTAAATTTTGACTCTATATAGGCTATTCAATTAGCAGTTATGAGTAAATGTATTGAACTTCTCTTTTTT-GTGAAAACATTGTGTTCCATCAAGCACTAACCATATGGAATGTTTGGAAGTTGAACAAAGACTGTTCATT--AAGCTTGAAAGGGACATATCTGAGCCAGCC-AGCACTTTGTAACCTGGCAGTCAGGCCTCAAAATCAAGCCTATTATTTTAGTAGGCCAATTAAAATTTTTAGAAACTCAGTGGAAATGTGGCATCTTC---AT---ACATTTTCAGCACCTTATAAATTAGGTACTTTTGCCTGGCACTAAAATATCCTTCTTGAA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828156 345 + 158137892 TCAGAGACACATAGGCTAAATTTTGACTCTATATAGGCTATTCAGTTAGCAGTTATGAGTAAATGTATTTAACTTCTCTTTCTTAGTGAAAATATTGTGTTAGTTCAAGCACTGACCATATGGAATGTTTGGAAGTTGAACAAAGACTGTTCATT--AAGTTTGAAAGGGCCAGATCTGAGCCAGCC-AGCACTTTGTAACCTGGCAGTCAGGCCTCAAAATCAAGCCTATTATTTTAGTAGGCCAATTAAGTTTTTGAGAAACTCAGTGGAAAGGTGGCACCTTC---AC---ACATTTTCAGCACCTTATAAATTAGGTACTTTTGCCTGGTACTAAAATATCCTTCTTGAA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5831360 345 +  72422247 TTAGAGACACATAGGCTAAATTTTGACTCTGTATAGGCTATTCAGTTAGCAGTTATGAGTAGATGTATTGAACTTCTCTTTCTTGGTGAAAATATTGTGTTCCATCAAGTACTAACCATATGGAATGTTTGGAAGTTGAACAAAGACTGTTCATT--AAGCTTGAAAGGGACAGATGTGAGTCAGCA-AACACTTTGTAACCTGGCAGTCAGGCCTCAAAATCAAGCCTATTGTTTTAGTAGACCAATTAAGTTTTTTAGAAACTCAGTGGACAGGTGCCATCTTC---AC---ACATTTTCAGCACCTTATAAATTAGGTGCTTTTGCCTGGCACTAAAATATCCTTCTTGAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551214 343 + 121039945 TTAGAGACACATAGGCTAAATTTTGACTCTATATAGGCTATCCAGTTAGCAGTTATGAGTAAATGTATTGAACTTCTCATTCTTGGTGAAAATATTGTGTTCCATCAAGCGATAACCATATGGAATTTTTGGAAGTTGAACAAAGACTGTTTATT--AAGCAAGAAAGGGACAGATCTGAGCCAGCC-AGCACTTTGTAACCTGCCAGTCAGGCCTCAAAATCAAGCCTATTATTTTAGTAGGCCAATTAAGTTCTTTAGAAACTCAGTGGAAAAGTGGCATCTTC---AC---ACATTTTCAGCACCT--TAAATTAGGTACTTTTGCCTGGCACTAAAATATCCTTCTTGAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891205 344 - 170124641 TTAGAGACAC--AGGTTAAATTTTGATTCTATATAGGCTATTCAGTTAGTAGTTATGAGTAAATGTATTGAACTTCTCATTCTTGATGCAAATATTGTGTTCCATCAAGCACTAACCATATGGAATGTTTGGAAGTTGAACAAAGACTGTTCATT--AAGCTTGAAAGGGACAGATCTGAGCCAGCCAAGCACTTTGTAACCTGGCAGTCAGGCCTCAAAATCAAGCCTATTATTTTAGTAGGCCAATTAAGTTCTTTAGAAACTCAGTGGAAAGATGGCATCTTC---AC---ACATTTTCAGCACCTTATAAATTAGGTACTTTTGCCTGGCACTAAAATATCCTTCTTGAA
i rheMac3.chr7                 I 45 C 0
s macFas5.chr7                 147881664 344 - 171882078 tTAGAGACAC--AGGTTAAATTTTGATTCTATATAGGCTATTCAGTTAGTAGTTATGAGTAAATGTATTGAACTTCTCATTCTTGATGCAAATATTGTGTTCCATCAAGCACTAACCATATGGAATGTTTGGAAGTTGAACAAAGACTGTTCATC--AAGCTTGAAAGGGACAGATCTGAGCCAGCCAAGCACTTTGTAACCTGGCAGTCAGGCCTCAAAATCAAGCCTATTATTTTAGTAGGCCAATTAAGTTCTTTAGAAACTCAGTGGAAAGATGGCATCTTC---AC---ACATTTTCAGCACCTTATAAATTAGGTACTTTTGCCTGGCACTAAAATATCCTTCTTGAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140808988 344 - 162156779 ttagaGACAC--AGGTTAAATTTTGATTCCATATAGGCTATTCAGTTAGTAGTTATGAGTAAATGTATTGAACTTCTCATTCTTGATGCAAATATTGTGTTCCATCAAGCACTAACCATATGGAATGTTTGGAAGTTGAACAAAGACTGTTCATT--AAGCTTGAAAGGGACAGATCTGAGCCAGCCAAGCACTTTGTAACCTGGCAGTCAGGCCTCAAAATCAAGCCTATTATTTTAGCAGGCCAATTAAGTTCTTTAGAAACTCAGTGGAAAGATGGCATCTTC---AC---ACATTTTCAGCACCTTATAAATTAGGTACTTTTGCCTGGCACTAAAATATCCTTGTTgaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36196895 346 +  58131712 tTACAGACACATAGGTTAAATTTTGACTCTATATAGGCTATTCAGTTAGTAGTTATGAGTAAATGTATTGAACTTCTCATTCTTGAAGAAAATATTGTGTTCCATCAAGCACTAACCATATGGAATGTTTGGAAGTTGAACAAAGACTGTTCATT--AAGCTTGAAAGGGACAGATCTGAGCCAGCCAAGCACTTTGTAACCTGGCAGTCAGGCCTCAAAATCAAGCCTATTATTTTTGTAGGCCAATTAAGTTCTTTAGAAACTCAGTGGAAAGATGGCATCTTC---AC---ACATTTTCAGCACCTTATAAATTAGGTACTTTTTCCTGGCACTAAAATATCCTTCTTGAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107999380 345 - 132174527 TTAAAGACATGTAGGCAGAATTTTGACTCCATATAGGCTATTCAGTTAGTAGTTATGAGTAAATGTACTGAACTTCTCATTCTTGGTGAAAATATTGTGTTTCATCAAGTACTAACCTAATGGAATGTTCAGAAGTTGAACAAAGACTGTTCATT--AAGCTTGAAAGGGACAGATGTGAGCCAGCC-AGCACTTTGTAACCTGGCAGTAAGGCCTCAAAATCAAACCTATTATTTTAGTAGGCCAATTAAGTTCCTTAGAAACTCAGTGGAAAGGTGGCATCTTC---AC---ACATTTTAGGCATCTTATAAATTGGGTACCTTTGCCTGGCACTAAAATATCCTTCTTGAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58125542 340 - 182113224 ----AGACACATAGGTTACA-TTTGAGTCTCTACAGGTGATTCAATTAAGAGTTATCTGTGAGTGCATTGTGCTTTTCTCCGTTGGTGAAAACATTGTGCTCCATCAAATGCTAACCATGTGGAAGCTTTAGAAGCTGGACAAAGAC-ATTCATT--AAGGTTGAAAGCCAGGCTTCTAGGCCAGAC-AGCACTTTGTAACTTCGTAG-CAGTCCTCTAAATCAAACCTATTATTTTAG-AAGCTAACAAAGTTCTTCTGAAACTCAGGAGAAAGGGCAGATCTCTTCAAA---ATACTTCCAGCATCTAATAAATTAAATATCTTAGCCTGGTACAAAAAGAACTTCCTTGAA
i mm10.chr2                    I 8 C 0
s canFam3.chr30                 26824797 344 -  40214260 CTAGAGACATATAGACTAAATTTTGATCCTAAATTGGCTATTCAATTAGGAGTTTTGAGTAAATATATTGAATTTCCCTTTCTGGGTGAAAATATTGTGCTCTATCAAGTATTAACCATAAGGAGTATTTGGAAGCTGAACAAAGACTGTTCATTAAAAGCTTGAAAGAGACAGATCTGAGCCAGCC-AGCAC-TCGTAGCCTGGCA-TCAGGCCTCTAAACCAAACCTATTATTTTAG-AGGGTAATTATGTTCTCTAGTAACTCAGTGGAAAGGCTGCATCTTC---ACAGAATATTTCCAGTACCTGATAAATTGAGTACCTTGATCTAGCACTAAAG---ATTTTTTGAA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36220345 3247 -  36342412 I

a score=6285.000000
s hg38.chr14_KI270725v1_random    166980 2 +    172810 CT
s panTro4.chrUn_GL393505          308194 2 +   1195001 CT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828501 2 + 158137892 CT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5831705 2 +  72422247 CT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551557 2 + 121039945 CT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891549 2 - 170124641 CT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882008 2 - 171882078 CT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140809332 2 - 162156779 ct
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36197241 2 +  58131712 CT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107999725 2 - 132174527 TT
i calJac3.chr10                C 0 C 0
s otoGar3.GL873530              36223592 2 -  36342412 CA
i otoGar3.GL873530             I 3247 C 0
s mm10.chr2                     58125882 2 - 182113224 AT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26825141 2 -  40214260 AT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=9287.000000
s hg38.chr14_KI270725v1_random    166982 2 +    172810 AA
s panTro4.chrUn_GL393505          308196 2 +   1195001 TA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828503 2 + 158137892 AA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5831707 2 +  72422247 TA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551559 2 + 121039945 TA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891551 2 - 170124641 TA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882010 2 - 171882078 TA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140809334 2 - 162156779 ta
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36197243 2 +  58131712 TA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107999727 2 - 132174527 TA
i calJac3.chr10                C 0 C 0
s micMur1.scaffold_38788            3430 1 -      5625 -a
i micMur1.scaffold_38788       N 0 I 1
s otoGar3.GL873530              36223594 1 -  36342412 -A
i otoGar3.GL873530             C 0 I 445
s mm10.chr2                     58125884 2 - 182113224 TA
i mm10.chr2                    C 0 I 3
s canFam3.chr30                 26825143 2 -  40214260 TA
i canFam3.chr30                C 0 I 9
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=86266.000000
s hg38.chr14_KI270725v1_random    166984 14 +    172810 AAAATCAAAATCAA
s panTro4.chrUn_GL393505          308198 14 +   1195001 AAAATCAAAATCAA
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828505 14 + 158137892 AAAATAAAAATCAA
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5831709 14 +  72422247 AAAATCAAAATCAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551561 14 + 121039945 AAAATCAAAATCGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891553 14 - 170124641 AAAATCAAAATCAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882012 14 - 171882078 AAAATCAAAATCAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140809336 14 - 162156779 aaaatcaaaatcaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36197245 14 +  58131712 AAAATCAAAATCAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                107999729 14 - 132174527 AAAATAAAAATCAA
i calJac3.chr10                C 0 C 0
s micMur1.scaffold_38788            3432 14 -      5625 aaaGTCAAAATCAG
i micMur1.scaffold_38788       I 1 N 0
s mm10.chr2                     58125889 14 - 182113224 CAAATAAAAATCAG
i mm10.chr2                    I 3 C 0
s canFam3.chr30                 26825154 14 -  40214260 AAAATCAAAATCAA
i canFam3.chr30                I 9 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I

a score=1011549.000000
s hg38.chr14_KI270725v1_random    166998 243 +    172810 TAAATCAATCTACTTCTCAGGCAACAAAGAAGCAGATGAAAGGCAACAACGGGGCAGATTAAACTTGTAGCAATGA-ATCCGAAATACACAGGAGCCTTAGTTTGATTAAGATG----------------ACAA-AAA--ACACCTGGAGGAAGGGCACTCAAGTCTGGCTCATGGTCTCTTTGTTCTTCCT---AAAATCTACATC-CCTTGCATCAACTACAGTACTATAGTCGATAATTTGAAGTTGAAGCATAATATCTTATT-
s panTro4.chrUn_GL393505          308212 243 +   1195001 TAAATCAATTTACTTCTCAG-CAACAAAGAAGCAGATGAAAGGCAACAACGGGGCAGATTAAACTTCTAGCAATGA-ATCCCAAATATTCGGGAGCCTTAGTTTGATTAAGATG----------------ACAAGAAA--ACACCTGGAGGAAGGGCACTCAAGTCTGGCTCATGGTCTCTTTGTTCTTCTT---AAAATCTACATC-CCTTGCATCAACTACAGTACTATAGTTGATGATTTGAAGTTGAAGCATAATATCTTATT-
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58828519 244 + 158137892 TAAATCAATCTACTTCTCAGGCAACAAAGAAGCAGATGAAAGGCAACAACGGGGCAGATTAAACTTCTAGCAATGA-ATCCGAAATATACAGGAGCCTTAGTTTGATTAAGATG----------------ACAAAAAA--ACACCTGGAGGAAGGGCACTCAAGTCTGGCTCATGGTCTCTTTGTTCTTCCT---AAAATCTACATC-CCTTGCATCAATTACAGTACTATAGTCGATGATTTGAAGTTGAAGCATAATATCTTATT-
i gorGor3.chr7                 C 0 I 3765
s ponAbe2.chrUn                  5831723 244 +  72422247 TAAGTCAATCTACTTCTTAGGCAACAAAGAAGCAGAAGAAAGGCAACAACGGGGCAGATTAAACTTCTAGCAATGA-GTCCCAAATATACAGGAGCCTTAGTTTGATTAAGATG----------------ACAAAAAA--ACACCTGGAGGAAGGGCACTCAAGTCTGGTTCATGGTCTCTTTGTTCTTCCT---AAAATCTACATC-CCTTGCATCAACCACAGTACTGTAGTCGATGATTTGAAGTTGAAGCATAATATCTTATT-
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551575 243 + 121039945 TAAATCAATCTACTTCTCAGGCAACAAAGAAGCAGATGAAAGGCAACAATGGGGCAGATTAAACTTCTAGCAATGA-ATCCCAAATATACAGGAACCTTAGTTTGATTAAGATG----------------ACAAAAAA--ACAGCTGGCGGAAGGGCACTCAAGTCTGGCTCATGGTCTCTTTGTTCTTCCT---AAAACCTACATC-CCTTGCATCAACTACAGTACTATACTTGATACTTTGAAGTTGAAGCATAATATCTTAT--
i nomLeu3.chr6                 C 0 I 1
s rheMac3.chr7                 145891567 260 - 170124641 TAAATCAATCTACTTCTCAGGCAACAAAGAAGCAGATGAAAGGCAACAACGGGGCAGATTAAAGTTCTAGCAATGA-ATCCCAAATATACAGGAGCCTTAGTTTGATCAAGATGCaaaaaaaaaaaaaaaaaaaaaaa--aCACCTGGAAGAAGGGCACTCAAGTCTGGCTCATGGTCTCTTTGTGCTACCT---AAAACCTACATCCCCTTACATCAACTACAGTACTATACTTGACGCTTTGAAGTTGAAGCATAATATCTTAT--
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147882026 257 - 171882078 TAAATCAATCTACTTCTCAGGCAACAAAGAAGCAGATGAAAGGCAACAACGGGGCAGATTAAAGTTCTAGCAATGA-ATCCCAAATATACAGGAGCCTTAGTTTGATCAAGATGC---aaaaaaaaaaaaaaaaaaaa--aCACCTGGAAGAAGGGCACTCAAGTCTGGCTCATGGTCTCTTTGTTCTACCT---AAAACCTACATCCCCTTGCATCAACTACAGTACTATACTTGATGCTTTGAAGTTGAAGCATAATATCTTAT--
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140809350 262 - 162156779 taaatcaatctACTTCTCAGGCAACAAAGAAGCAGATGAAAGGCAACAACGGGGCAGATTAAAGTTCTAGCAATGA-ATCCCAAATATACAGGAGCCTTAGTTTGAtcaagaagccaaaaaaaaaaaaaaaaaaaaaaccacacctgGAAGAAGGGCACTCAAGTCTGGCTCATGGTCTCTTTGTTCTACCT---AAAACCTACATCTCCTTGCATCAACTACAGTACTATACTTGATGCTTTGAAGTTGAAGcataatatcttat--
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36197259 259 +  58131712 TAAATCAATCTACTTTTCAGGCAACAAAGAGGCAGATGAAAGGCAACAACGGGGCAGATTAAAGTTCTAGCAATGA-ATCCCAAATATACAGGAGCCTTAGTTTGATTAAGATGCCa-aaaaaaaaaaaaaaaaaaaa--aCACCTGGAAGAAGGGCACTCAAGTCTGGCTCATGGTCTCTTTGTTCTACCT---AAAACCTGCATCCCCTTGCATCAACTACAGTACTATACTTGATGCTTTGAAGTTGAAGCATAATATCTTAT--
i chlSab2.chr26                C 0 I 1
s calJac3.chr10                107999743 246 - 132174527 TAAATCAATTTACTTCTCAGTCAACAGAGAAGCAGATGAAAGGCAATAACGGGGCAGATTAAAGTCCTAGCAATGC-ATTCCAAATATACAGGAGCCTTAGTTTGATTAAGATGC---------------CAAAAGAA--ACACCGGGAAGAAGGGCAGCCAAGTCTGGTTCATGGTCCCTTTGTTCTTCCTAAAAAAACCTACATC-CCTTGCATCAACTATAGTACTATACTTGATACTTTGAAGTTGAAGCATAATATCTTA---
i calJac3.chr10                C 0 I 1
s mm10.chr2                     58125903 229 - 182113224 TCAATCAGGCAAGTTCCTGGGGAATA-AGAATTGCATAAAATGGAACAATGAACTGGACAGAAGTTTTAAAGATGT-CTCACAAATATGGTGGAGTCTC--TTTGATTAAGGCA----------------TCAAGGGA--ACTCTTGAAA-----GTCTTGAAATTT------TGGTCCTTCTGGTCTACCT---CTAAATAGCATC-CTTTCCCTTAACAATGTCATCACAGTTAGTAAGTAGAAGGCAGATACTGTTGCCTTAT--
i mm10.chr2                    C 0 I 1
s canFam3.chr30                 26825168 243 -  40214260 TAAATTAATCCAGTTCCCAGGCAACAAAGAAGCTGATGAAAGGCAAGAATGAAGCAGATTAAAGTTCTAGCGATGATGCTCCAAATATAATAGAGCCTTTATTTTATTAACA------------------CTCAGGAA--GCACCTGGAAGAAGTGCAGCCAAATCTTGCTCTTCATCCCTTTGTTCTCCCT---AAGACCCATATC-CCTTGTTTTAACTCTAGTACCATACCTGATACTCTAAAGTTGAGACATACTGCTTTAT-T
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I

a score=105446.000000
s hg38.chr14_KI270725v1_random    167241 28 +    172810 -TTTTTCTGACATTGCAAGTATATAACAG
s panTro4.chrUn_GL393505          308455 27 +   1195001 -TTTT-CGGACATTGCAAATATATAACAG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5831967 27 +  72422247 -TTTT-CTGACATTGCAAGTATATAACAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551819 27 + 121039945 -TTTT-CTGACATTGCAAGTATATAACAG
i nomLeu3.chr6                 I 1 C 0
s rheMac3.chr7                 145891828 27 - 170124641 -TTTT-CTGACATTGCAAGTATATAACAG
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147882284 27 - 171882078 -TTTT-CTGACATTGCAAGTATATAACAG
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140809613 27 - 162156779 -tttt-ctgaCATTGCAAGTATATAACAG
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36197519 27 +  58131712 -TTTT-CTGACATTGCAAGTATATAACAG
i chlSab2.chr26                I 1 C 0
s calJac3.chr10                107999990 27 - 132174527 -TTTT-CTGACATTGCAAGTATGTAACAG
i calJac3.chr10                I 1 C 0
s mm10.chr2                     58126133 27 - 182113224 -GTAT-CTGACAATGGAAATTTATTGTAG
i mm10.chr2                    I 1 C 0
s canFam3.chr30                 26825411 28 -  40214260 TTTTT-CTGACATTGCAAATGCATTATAT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e gorGor3.chr7                  58828763 3765 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I

a score=1545.000000
s hg38.chr14_KI270725v1_random    167269 17 +    172810 ATCACAAAGttttttt-t
s panTro4.chrUn_GL393505          308482 18 +   1195001 ATCAGTAAGTTTTTTTCt
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5831994 18 +  72422247 TTCACAAAGTTtttcctt
i ponAbe2.chrUn                C 0 I 12
s mm10.chr2                     58126160 17 - 182113224 ACCACAACCTTGTTTCT-
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e gorGor3.chr7                  58828763 3765 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26825439  0 -  40214260 C
e rheMac3.chr7                 145891855  0 - 170124641 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I
e calJac3.chr10                108000017  0 - 132174527 C
e chlSab2.chr26                 36197546  0 +  58131712 C
e papAnu2.chr7                 140809640  0 - 162156779 C
e macFas5.chr7                 147882311  0 - 171882078 C
e nomLeu3.chr6                  53551846  0 + 121039945 C

a score=546.000000
s hg38.chr14_KI270725v1_random    167286 1 +    172810 t
s panTro4.chrUn_GL393505          308500 1 +   1195001 t
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5832024 1 +  72422247 t
i ponAbe2.chrUn                I 12 C 0
s mm10.chr2                     58126177 1 - 182113224 T
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e gorGor3.chr7                  58828763 3765 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26825439 0 -  40214260 C
e rheMac3.chr7                 145891855 0 - 170124641 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I
e calJac3.chr10                108000017 0 - 132174527 C
e chlSab2.chr26                 36197546 0 +  58131712 C
e papAnu2.chr7                 140809640 0 - 162156779 C
e macFas5.chr7                 147882311 0 - 171882078 C
e nomLeu3.chr6                  53551846 0 + 121039945 C

a score=546.000000
s hg38.chr14_KI270725v1_random    167287 1 +    172810 t
s panTro4.chrUn_GL393505          308501 1 +   1195001 t
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58832528 1 + 158137892 t
i gorGor3.chr7                 I 3765 I 1572
s ponAbe2.chrUn                  5832025 1 +  72422247 t
i ponAbe2.chrUn                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58126178 0 - 182113224 C
e canFam3.chr30                 26825439 0 -  40214260 C
e rheMac3.chr7                 145891855 0 - 170124641 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I
e calJac3.chr10                108000017 0 - 132174527 C
e chlSab2.chr26                 36197546 0 +  58131712 C
e papAnu2.chr7                 140809640 0 - 162156779 C
e macFas5.chr7                 147882311 0 - 171882078 C
e nomLeu3.chr6                  53551846 0 + 121039945 C

a score=16393.000000
s hg38.chr14_KI270725v1_random    167288 70 +    172810 ctttt----------------ttttgagatggagtctcgctctgtcacccaggctgga-tgcagtggcacgatcgtcactgcaagct
s panTro4.chrUn_GL393505          308502 87 +   1195001 cttttatttatttatttatttttttgagatggagtctcgctctgtcacccaggctggagtgcagtggctcgatcgtcactgcaagct
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5832026 71 +  72422247 ttttt----------------ttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcacgatcgtcactgcaagct
i ponAbe2.chrUn                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e gorGor3.chr7                  58832529 1572 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58126178  0 - 182113224 C
e canFam3.chr30                 26825439  0 -  40214260 C
e rheMac3.chr7                 145891855  0 - 170124641 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I
e calJac3.chr10                108000017  0 - 132174527 C
e chlSab2.chr26                 36197546  0 +  58131712 C
e papAnu2.chr7                 140809640  0 - 162156779 C
e macFas5.chr7                 147882311  0 - 171882078 C
e nomLeu3.chr6                  53551846  0 + 121039945 C

a score=78962.000000
s hg38.chr14_KI270725v1_random    167358 153 +    172810 ccgcctcctggcttcacaccattctcctgcctcagcctcccgagtagttgggactacaggcgcccgccaccacgcccggctaattttttctatttttcagtacagacggggtttcaccgtgttagccaggatggtcgcgatctcctgacctcC
s panTro4.chrUn_GL393505          308589 153 +   1195001 ccgcctcccggtttcacgccattctcccgcctcagcctcccgagtagctaggactacaggcgcccgccaccacgcccagctatttttttctatttttcagtggagatggggtttcaccgtgttagccaggatggtcgcgatctcctgacctcg
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58834101 153 + 158137892 ccgcctcctggcttcacgccattctcctgtctcagcctcccgagtagctgggactacaggcgcccaccaccacgcccggctaattttttctatttttcagtacagacggtgtttcaccgtgttagccaggatggtcgcgatctcctgacctcC
i gorGor3.chr7                 I 1572 C 0
s ponAbe2.chrUn                  5832097 153 +  72422247 ctgcctcccggcttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggttaattttttctatttctcagtagagacggggtttcaccacgttagccaggatggtcgcgatctcctgacctcg
i ponAbe2.chrUn                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58126178   0 - 182113224 C
e canFam3.chr30                 26825439   0 -  40214260 C
e rheMac3.chr7                 145891855   0 - 170124641 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I
e calJac3.chr10                108000017   0 - 132174527 C
e chlSab2.chr26                 36197546   0 +  58131712 C
e papAnu2.chr7                 140809640   0 - 162156779 C
e macFas5.chr7                 147882311   0 - 171882078 C
e nomLeu3.chr6                  53551846   0 + 121039945 C

a score=107340.000000
s hg38.chr14_KI270725v1_random    167511 23 +    172810 ATCACAAAGTTGATTTTCTTTTC
s panTro4.chrUn_GL393505          308742 23 +   1195001 ATCACAAAGTTGATTATCTTTTC
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58834254 23 + 158137892 ATCACAAAGTTGATTTTCTTTTC
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5832250 23 +  72422247 ATCACAAAGTTGATTATCTTTTC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551846 23 + 121039945 ATCACAAAGTTGATTCTCTTTTC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891855 23 - 170124641 ATCACAAAGTTGATTCTCTTTTC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882311 23 - 171882078 ATCACAAAGTTGATTCTCTTTTC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140809640 23 - 162156779 ATCACAAAGTTGATTCTCTTTTC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36197546 23 +  58131712 ATCACAAAGTTGATTCTCTTTTC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108000017 23 - 132174527 ATCACAAAGTTGATTCTCTTTTC
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26825439 23 -  40214260 ATCACCAAATTGTTTCTCTTTTC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58126178  0 - 182113224 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I

a score=633798.000000
s hg38.chr14_KI270725v1_random    167534 144 +    172810 ACTTGTCAAGTTCTTACACTGTCTATCTAAAATTCATATCTTGACCTTTCATGTCTGTCTTCAATAACAAATCATCTCTCTTCCCACTCTCTATCAATTTGATCTCTTTCTCTTTGCTTTGTTCTCGAGGAGAGAAAGGTGTAT
s panTro4.chrUn_GL393505          308765 123 +   1195001 ACTTGTCAAGTTCGTACACTGTCTATCTAAAATTCATATCTTGACCTTTCATGTCTGTGTTC---------------------CCACTCTCTGTCAATTTGATCTCTTTCTCTTTGCTTTGTTCTGGAGGAGAGAAAGGTGTAT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58834277 144 + 158137892 ACTTGTCAAGTTCTTACACTGTCTATCTAAAGTTCATATCTTGACCTTTCATGTCTGTCTTCAAGAACAAATCATCTCTCTTCCCACTCTCTGTCAATTTGATCTCTTTCTCTTTGCTTTGTTCCCGAGGAAAGAGAGGTGTAT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5832273 144 +  72422247 ACTTGTCAAGTTTTTACACTGTCTATCTAAAATTCATATCTTGACCTTTCATGTCTGTCTTCAAGAATAAGTCATCTCTCTTCCCACTCTCTGTCAATTTGATCTCTTTCTCTTTGCTTTGTTCTGGAGGAGAGAAAGGTGTAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53551869 144 + 121039945 GCTTGTCAAGTTCTTACCCTGTCTATCTAAAATTCATATCTTGACCTTTCATGTCTGTCTTCAAGAACAAATCATCTCTCTTCCCACTCTCTGTCAATCTGATCTCTTTCTCTTTGCTTTGTTCTGGAGGAGTGAAAGGTGTAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145891878 144 - 170124641 ACTTGTCAAGCTCTTACCCTGTCTATCTAAAATTCATATCTTGACCTTTCATGTCTGTCTTCAAGAACAAATCATCTCTCTTCCCACTCTCTGTCAATTTGATCTCTTTCTCTTTGCTTTGTTCTGGAGGAGAGAAAGGTGTAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882334 144 - 171882078 ACTTGTCAAGCTCTTACCCTGTCTATCTAAAATTCATATCTTGACCTTTCATGTCTGTCTTCAAGAACAAATCATCTCTCTTCCCACTCTCTGTCAATTTGATCTCTTTCTCTTTGCTTTGTTCTGGAGGAGAGAAAGGTGTAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140809663 144 - 162156779 ACTTGTCAAACTCTTACCCTGTCTATCTAAAATTCATATCTTGACCTTTCATGTCTGTCTTCAAGAACAAATCATCTCTTTTCCCACTCTCTGTCAATTTgatctctttctctttgctttgttcTGGAGGAGAGAAAGGTgtat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36197569 144 +  58131712 ACTTGTCAAGCTCTTACCCTGTCTATCTAAAATTCATATCTTGACCTTTCATGTCTGTCTTCAAGAACAAATCATCTCTCTTCCCACTCTCTGTCAATTTGATCTCTTTCTCTTTGCTTTGTTCTGAAGGAGAGAAAGGTGTAT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108000040 144 - 132174527 ACCTGTCAAGCTCTTACCCTGTCTATCTAAAATTCATACCTTGACCTTTCATGTCTATCTTCAAGAACAAATTATCTCTCTTCCCACTCTCTGTCAATTTGATCTCTTTCTCTTTGCTTTGTTCTGGAGAAGAGACAGGTATAT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58126178 132 - 182113224 ACTTGTCATGCTGTTGC----TGTGTCTAAAGTTCACA-CTTGATCTTACATGTCCATCCTCAATAACAAATCATCTTTCTTCCAACTTTTCATCCATATA------TTTTTTTTGAAGTGTGGAAGAATAAAAGAAAAGAAA-
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26825462 137 -  40214260 ACAAGAGAAGCTGTTCC----CCTATCTAAAATTCATGCCTTGACCTTACATGTCTGTCTTCTAGAACAAATCATCTTTC-TCTCACTGTCCATTAAGGTGGTCTCCG--TCTTTGCTGTATACTGGAAAGGAAGAAAGCATAT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I

a score=23355.000000
s hg38.chr14_KI270725v1_random    167678 6 +    172810 CTGTAT
s panTro4.chrUn_GL393505          308888 6 +   1195001 CTGTAT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58834421 6 + 158137892 CTGTAT
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5832417 6 +  72422247 GTGTAT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53552013 6 + 121039945 CTGTAT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145892022 6 - 170124641 CTGTAT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882478 6 - 171882078 CTGTAT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140809807 6 - 162156779 ctgtat
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36197713 6 +  58131712 CTGTAT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108000184 6 - 132174527 CTGTAT
i calJac3.chr10                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58126310 0 - 182113224 C
e canFam3.chr30                 26825599 0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36223595 445 -  36342412 I

a score=28360.000000
s hg38.chr14_KI270725v1_random    167684 10 +    172810 TCTTTTCTTC
s panTro4.chrUn_GL393505          308894 10 +   1195001 TATTTTCTTC
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58834427 10 + 158137892 TGTTTTCTTC
i gorGor3.chr7                 C 0 C 0
s ponAbe2.chrUn                  5832423 10 +  72422247 CATTTTCTTC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53552019 10 + 121039945 TATTTTCTTA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145892028 10 - 170124641 TATTTTCTTA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882484 10 - 171882078 TATTTTCTTA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140809813 10 - 162156779 tattttctta
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36197719 10 +  58131712 TATTTTCTTA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108000190 10 - 132174527 TATTTTCTTA
i calJac3.chr10                C 0 C 0
s otoGar3.GL873530              36224040  9 -  36342412 tatatatat-
i otoGar3.GL873530             I 445 I 1430
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58126310  0 - 182113224 C
e canFam3.chr30                 26825599  0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=1844146.000000
s hg38.chr14_KI270725v1_random    167694 481 +    172810 TTTGTCCGAATTAAACAGCTGTTCTTGGAGAGTGGTGAGCAGTTCTTTATGCAAAGGAGAACTAGTTACTTAT--TTTTGTACCATTTACAAAAAA-AGTAAGAAAATGCTGAAAACCAGTATCTTAAAATATTCATTTTATTTAATTTTGTTTTAATTGGGGCACAGATAT-----------------------------------------------------------------AAGGGAATATTTTTAGTTGAATAAGGAATAAAAATATTTGGTTATAAATCCTCAAGAAtatttatatcttaaaattgtttttatatttctgtttctatGACATTCAAATGGGAAAA-TTTTTTTC--TAGAATT---TAGAGAGATTTACAAATAATTGCATAAATATGTCTAGAAATT--GAAAAATTAAAAGAAAAATACAACAATGAGAAAGTGTATTGAACTTGA---AGAATACCCTAATTGTGAAAACCAAACTTTCATAATATTATTTTAATGTTTTCTGATTTGCATTTTG--------------------GGAATTCTTGCCTTCACTGTATTT
s panTro4.chrUn_GL393505          308904 481 +   1195001 TTTGTCCGAAGTAAACAGCTGTTCTTGGAGAGTGGTGAGCAGTTCTTTATGCAAAGGAGAACTAGTTACTTAG--TTTTGTACCATTTACAAAAAA-AGTAAGAAAATGCTGAAAACCAGTATCTTAAAATGTTCATTTTATTCAATTTTATTTTAATTGGGGCACAGATAT-----------------------------------------------------------------AAGGGAATATTTTTAGTTGAATAAGGAATAAAAATATTTGGCTATAAATCCTCAAGAATATTTATACCTTAAAATTGTTTTTATATTTCTGTTTCTAAGACATTCAAATGGGAAAA-ATTTTTCC--TAGAATT---TAGACAGATTTACAAATAATTGCATAAATATGTCTAGAAATT--GAAAAATTAAAAGAAAAATACAACAATGAGAAAGTGAATTGAAGTTGA---AAAATACCCTAATTGTGAAAACCAAACTTTCATAATATTATTTTAATGTTTTCTGATTTGCATTTTC--------------------AGAATTCTTGCCTTCACTGTGTTT
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58834437 481 + 158137892 TTTGTCCGAATTAAACAGCTGTTCTTGGAGAGTGGTGAGCAGTTCTTTATGCAAAGGAGAACTAGTTATTTAG--TTTTGTACCATTTACAAAAAA-AGTAAGAAAATGCTGAAAACCAGTATCttaaaatattcattttattcaattttattttaattGGGGCACAGATAT-----------------------------------------------------------------AAGGGAATATTTTTAGTTGAATAAGGAATAAAAATATTTGGTTATAAATCCTCAAGAATATTTATATCTTAAAATTGTTTTTATATTTCTGTTTCTATGACATTCAAATGGGCAAA-ATTCTTTC--TAGAATT---TAGACAGATTTACAAATAATTGCATAAATATGTCTAGAAATT--GAAAAATTAAAAGAAAAATACAACAATGAGAAAGTGTATTGAAATTGA---AGAATACCCTAATTGTGAAAACCAAACTTTCATAATATTATTTTAATGTCTTCTGATTTGCATTTTG--------------------GGAATTCTTGCCTTCACTGTGTTT
i gorGor3.chr7                 C 0 I 3445
s ponAbe2.chrUn                  5832433 481 +  72422247 TTTGTCCGAATTAAATAGCTGTTCTTGGAGAGTGGTGAGCAGTTCTTTATGCAAAGGAGAACTAGTTACTTAG--TTTTGTACCATTTACAAAAAA-AGTAAGAAAATGCTGAAAACCAGTATCttaaaatattcattttattcaattttattttaattGGGTCACAGATAT-----------------------------------------------------------------GAGGGAATATTTTTAGTTGAATAAGGAATAAAAATATTTGGTTATAAATCCTCAAGAATATTTATATCTTAAAACTGTTTTTATATTTCTGTTTCTATGACATTCAAATGGGCAAA-ATTTTTTC--TAGAATT---TAGACAGATTTACCAATAATTGCATAAATATGTCTAGAAATT--GAAAAATTAAAAGAAAAATACAACAATGAGAAAGTGAATTGAACTTGA---AAAATACCATAATTGTGAAAACCAAACTTTCATAATATTATTTTAATGTTTTCTGATTTGCATTTTG--------------------GGAAATCTTTCCTTCACTGTGTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53552029 480 + 121039945 TTTGTCAGAATTAAACAGCTGTTCTTGGAGAGTGGTGAGCAGTTCTTTTTGCAAAGGAGAACTAGTTACTTAG--TTTTGTACCATTTAC-AAAAA-AGTAAGAAAATGCTGAAAACCAGTATCTTAAAATAttcattttattcaattttattttaattGGGGCATAGATAT-----------------------------------------------------------------AAGGGAATATTTTTAGTTGACTAAGGAATAAAAATATTTGGTTATAAATCCTCAAGAATATTTATATCTTAAAATTGCTTTTATATTTCTGTTTCTATGACATTCAAATGGGCAAA-TTTTTTTC--TAGAATT---TAGACAGATTTACAAATAATTGCATAAATATGTCTAGAAATT--GAAAAATTAAAAGAAAAATACAACAAAGAGAATGTGAATTGAACTTGA---AAAATACCCTAATTGTGAAAACCAAACTTTCATAATATTATTTTAATGTTTTCTGATTTGCATTTTG--------------------GGAATTCTGGCCTTCACTGTGTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145892038 545 - 170124641 TTTGTCAGAATTAAACAGCTGTTCTTGGAGAGTGGTGAGCAGTTCCTCATGCAAAGGAGAACTAGTTATTTAG--TTTTGTACCATTTAC-AAAAA-AGAAAGAAAGTGCTGAAAACCAGTATCTTAAAATATTCATTTTATTCCATTTTATTTTAATTGGGGCATGGATATAAGGGAATCTTCTTAGNNNNNNNNNNNNNNNNNNNNNCATTTTATTTTAATTGGGGCATGAATAAAAGGGAATATTTTTAGTTGAATAAGGAATAAAAATATTTGGTTATAAATCCTCAAGAATATTTACATCTTAAAATTGTTTTTATATTTCTGTTTTTATGACATTCAAATGGGCAAA-TTTTTTTC--TTGAATT---TAGACAGATTTACAAATAATTGCATAAATATGTCTAGAAATT--GAAAAATTAAAAGAAAAATGCAACAATGAGAACACGAATTGAACTTGA---AAAATACCCTAATTATGAAAACCAAACTTTCCTAATATTATTTTAATGTTTTCTGACTTGCATTTTG--------------------GGAATTCTTGCCTTCACTGCATTT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882494 481 - 171882078 TTTGTCAGAATTAAACAGCTGTTCTTGGAGAGTGGTGAGCAGTTCCTCATGCAAAGGAGAACTAGTTATTTAG--TTTTGTACCATTTAC-AAAAA-AGAAAGAAAGTGCTGAAAACCAGTATCTTAAAATATTCATTTTATTCCATTTTATTTTAATTGGGGCATGGATAT-----------------------------------------------------------------AAGGGAATATTTTTAGTTGAATAAGGAATAAAAATATTTGGTTATAAATCCTCAAGAATATTTACATCTTAAAATTGTTTTTATATTTCTGTTTTTATGACATTCAAATGGGCAAATTTTTTTTC--TTGAATT---TAGACAGATTTACAAATAATTGCATAAATATGTCTAgaaatt--gaaaaattaaaagaaaaatgcaacaatgagaacatgaattgaacttga---aaaATACCCTAATTATGAAAACCAAACTTTCCTAATATTATTTTAATGTTTTCTGACTTGCATTTTG--------------------GGAATTCTTGCCTTCACTGCATTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140809823 480 - 162156779 tttgtcagAATTAAACAGCTGTTCTTGGAGAGTGGTGAGCAGTTCCTCATGCAAAGGAGAACTAGTTATTTAG--TTTTGTAccatttac-aaaaa-agaaagaaaatgctgaaaaccagtatcttaaaatattcattttattccattttattttaattggggCATGGATAT-----------------------------------------------------------------AAGGGAATATTTTTAGTTgaataaggaataaaaatatttggttatAAATCCTCAAGAATATTTacatcttaaaattgtttttatatttctgtttttatgacattCAAATGggcaaa-tttttttc--ttgaatt---tagaCAGATTTACAAATAATTGCATAAATATGTctagaaatt--gaaaaattaaaagaaaaatgcaacaatgacaatgtgaattgaacttga---aaaatACCCTAATTATGAAAACCAAActttcataatattattttaatgttttctgacTTGCATTTTG--------------------GGAATTCTTGCCTTCACTGCGttt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36197729 472 +  58131712 TTTGTCAGAATTAAACAGCTGTTCTTGGAGAGTGGTGAGCAGTTCCTCATGCAAAGGAGAACTAGTTATTTAG--TTTTGTACCATTTAC-AAAAA-AGAAAGAAAATGCTGAAAACCAGTATCTTAAAATAttcattttattgcattttattttaattGGGGCATGGATAT-----------------------------------------------------------------AAGGGAATATTTTTAGTTGAATAAGGAATAAAAATATTTGGTTATAAATCCTCAAGAATATTTACATCTTAAAATTG-TTTTATATTTCTGTTTCTATGACATTCAAGTGGGCAAA-TTTTTTTC--TTGAATT---TAGACAGATGTAC----AATTGCATAA--ATGTCTAGAAATT--GAAAAATTAAAAGAAAAATGCAACAATGAGAACGTGAATTGAACTTGA---AAAA-ACCCTAATTATGAAAACCAAACTTTCATAATATTATTTTAATGTTTTCTGATTTGCATTTTG--------------------GGAATTCTTGCCTTCACTGTGTTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108000200 478 - 132174527 TTTGTCAGAATTAATCAACTATTTTTGGAGAGTGGTAAGCAGTTATTTATGCAAAGGCGAACCTGTTATTTAG--TTTTGTACCCTTTACAAAAGA-GAAAATAAAATGCTAAAACACAGTATCTTAAAATACTCATTTTATTCCATTCTATTTTAATTGGGGCACAGATAT-----------------------------------------------------------------AAAGGAATATTTTTAGTTGAATAAGGAATTAAAATATTTGGTTACAAATCCTCACAAAGATTTATATTTTAAAATTGTTTTTGTGTTTCTGTTTCTATGACAATCAAGTGAGCAAA-TTTTTTTTTGTAGAATT---CAGACAGATTTACAAATAATTGCATTAATATG-CTAGAAATT--GAAAAATTAAAAGAAAAATATAATAATGAGAAGGTGAATTGAACTTGA---AAAATATCCTAATTCTGAAAACCAAACTTTCATAATATTA----AATTATTTCTGATTTGCATTTTG--------------------GGAACTCTTGCCTTTACTGTGTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58126310 469 - 182113224 -TTGTCTAAATAAAAAAGTCATTATTGGAGAATG-----------CGTGTGTAAAGGTGAACTAGTTACTTAGCATTTTGT--TAGTCACAAAAGATAAAAAAAAGAGGTTAAAAATTGACA--ATAAAATGTGAATTTTATGACATGC-----TAAGTGTGACATAGATAT-----------------------------------------------------------------AAGGAAATAATTTTAATT-CTCAATGACTAAAAAGATTTTGTTATTAACCTTAAA-------TGCATACTAAAGTTATTTTCTTGTTTCAG-TAATATGATAT--ATATGTGCAGA-AATATTTC--TGCATTTGCATAGATAGACTTTCAAATCATGGTG-------ATCTAGGATTTAAAAAAAATCTGAAGAACAGTAT-ACTATAAAGAGATAAATTGAACTTGAGAGAGAATAGCTTGATTATAAAGACC--ATTTTTATGCTATTACTTTAATAGTTTCTGGCTTGCATTTTAAAAAGTATGCCTTTGTTACCAGAAATTTCACCTTTACTGCATT-
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26825599   0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36224049 1430 -  36342412 I

a score=148806.000000
s hg38.chr14_KI270725v1_random    168175 42 +    172810 TTTTCCTTAGATTTTCTCTACATACTGTTCACAAAATTCAGT
s panTro4.chrUn_GL393505          309385 42 +   1195001 TTTTCCTTAGATTTTCTCTACGTACTGTTCACAAAATTCAGC
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5832914 42 +  72422247 TTTTCCTTAGACTTTCTCTACATACTGTTCACAAAATTCAGT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53552509 42 + 121039945 TTTTCCTTAGATTTTCTCTACATACTGTTCACAAAATTCAGT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145892583 42 - 170124641 TTTTCCTTAGATTTTCTCTACATACTGTTCACAAAATTCAGT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147882975 42 - 171882078 TTTTCCTTAGATTTTCTCTACATACTGTTCACAAAATTCAGT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140810303 42 - 162156779 ttttCCTTAGATTTTCTCTACATACTGTTCACAAAATTCAGT
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36198201 42 +  58131712 TTTTCCTTAGCTTTTCTCTACATACTGTTCACAAAATTCAGT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108000678 42 - 132174527 TTTTCCTTAGACTTTCTCTACATACTGTTCCAAAAATTCAGT
i calJac3.chr10                C 0 I 127
s mm10.chr2                     58126779 41 - 182113224 CTTTCTTTAGGCTTTTTCT-CACACTGCTTGCAAACTTTAAT
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26825599  0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36224049 1430 -  36342412 I

a score=193826.000000
s hg38.chr14_KI270725v1_random    168217 59 +    172810 TAAAAACTATTTTAGAGATTTTCTAGGGAAAAGGCTGCATGCTCAGTCATTGACTGTTA
s panTro4.chrUn_GL393505          309427 59 +   1195001 TAAAAACTATTTTAGAGATTGTCTAGGGAAAGGGCTGCATGCTCAGTCATTGACTGTTA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5832956 59 +  72422247 TAAAAACTATTTTAGAGATTGTCTAGGGAAAGGGCTTCATGCTCAGTCATTGACTGTTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53552551 59 + 121039945 TAAAAGCTATTTTAGAGATTGTCTAGGGAAAGGGCTGCATGCTCAGTCATTGACTGTTA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145892625 59 - 170124641 TAAAAGCTATTTTAGAGATTGTCTAGGGAAAGGGCTGCATGCTCAGTCATTGACTGTTA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883017 59 - 171882078 TAAAAGCTATTTTAGAGATTGTCTAGGGAAAGGGCTGCATGCTCAGTCATTGACTGTTA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140810345 59 - 162156779 TAAAAGCTATTTTAGAGATTGTGTAGGGAAAGGGCTGCATGTTCAGTCATTGACTGTTA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36198243 59 +  58131712 TAAAGGCTGTTTTAGAGATTGTCTAGGGAAAGGGCTGCATGCCCAGTCATTGACTGTTG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108000847 59 - 132174527 taaaaGCTATTTTAGAGATTTTCTGGGGAAAGGGCTGGATGCTCAGTCATTGACTGTTA
i calJac3.chr10                I 127 C 0
s mm10.chr2                     58126820 59 - 182113224 AACACACTATTTTAAGGACTGTGCAGGGAATGGCTTATGTACTGTTTCATGTTCCATTC
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26825599  0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36224049 1430 -  36342412 I

a score=643424.000000
s hg38.chr14_KI270725v1_random    168276 172 +    172810 CTTACATTGGTACAATTAGGGGTATTAAATTTGAGTTCAT--TGGATTTATGCTTCTCCCCACACAGGCTGACTATTGGTAGCTGTTGCTGCTTGGAATACATATTGGCTTAATTAATCAGTACTATTTAGAATTCTG-TGAGAATGCAAACTAATTATGAACTTTCCCTGATAA
s panTro4.chrUn_GL393505          309486 172 +   1195001 CTTACATTGGTACAATTAGGGGTATTAAATTTGAGTTCAT--TGGATTTATGCTTCTCCCCACACAGGCTGACTATTGGTAGCTGTTGCTGCTTGGAATACATATTGGCTTAATTAATCAGTACTATTTGGAATTCTG-TGACAATGCAAACTAATTATGAACTTTCCCTGATAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833015 172 +  72422247 CTTACATTGGTACAATTAGGGGTATTAAATTTGAGTTCAT--TGGATTTATGCTTCTCCCCACACAGGCTGACTATTGGTAGCTGTTGCTGCTTGGAATACATATTGGCTTAATTAATCAGTACTATTTGGAATTCTG-TGAAAATGCAAACTAATTATGAACTTTCCCTGATAA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53552610 171 + 121039945 CTTCCATTGGTACAATTAGGGGTATTAAATTTGAGTTCAT--TGGATTTATGCTTCTCCCCACACAGGCTGACTATT-GCAGCTGTTGCTGCTTGGAATACATATTGGCTTAATTAATCAGTACTATTTGGAATTTTG-TGAAAATGCAAACTAATTATGAACTTTCCCTGATAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145892684 171 - 170124641 CTTACATTGGTACAACTAGGGGTATTAAAGTTGAATTCAT--TGGATTTATGCTTCTCCCCACACAGGCTGACTATT-GTTGCTGTTGCTGCTTGGAATACATATTGGCTTAATTAATCAGTACTATTTGGAATTTTG-TGGAAATGCAAACTAATTATGAACTTTCCCTGATAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883076 171 - 171882078 CTTACATTGGTACAACTAGGGGTATTAAAGTTGAATTCAT--TGGATTTATGCTTCTCCCCACACAGGCTGACTATT-GTTGCTGTTGCTGCTTGGAATACATATTGGCTTAATTAATCAGTACTATTTGGAATTTTG-TGGAAATGCAAACTAATTATGAACTTTCCCTGATAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140810404 171 - 162156779 CTTACATTGGTACAATTAGGGGTTTTAAAGTTGAATTCAT--TGGATTTATGCTTCTCCCCACACAGGCTGACtatt-gttgctgttgctgcttgGAATACATATTGGCTTAATTAATCAGTACTATTTGGAATTTtg-tgaaaatgcaaactaattatGAACTTTCCCTGATAA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36198302 171 +  58131712 CTTACATTGGTACAATTAGGGGTTTTAAATTTGAGTTCAT--TGGATTTATGCTTCTCCCCACACAGGCTGACTATT-GTTGGTGTTGCTGCTTGGAATACATATTGGCTTAATTAATCAGTACTATTTGGAATTTTG-TGAAAATGCAAACTAATTATGAATCTTCCCTGATAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108000906 172 - 132174527 CTTACATTGGTACATTTAGGGGTATTAAATTTGAGTTCAT--TGAATTTATGCTTCTCCCCACACAGGCTGACTATT-GTAGCTGTTGGTGCTTAGAATACATATTGGCTTAATTAATCAGTACTACTTGGAATTTTGTTGAACATGCAAACTAATTAAGAACTTTCCCTGATAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58126879 168 - 182113224 CTAACCTTAGTGTAATTA-AGATGTGAAATCTGAATTCAT--TTGGTTTCTGCTCTTCCCC-CTTAACCTGAGGCTT-CTTGCTGCAGCTGTACTGAAAGTGTGTTGGCTTTCCCAGTCAGTAAGATTTGGAATGTGT-TGCAAATACAAACTGATTCTACACTTTTCCTGATA-
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26825599 171 -  40214260 CTTACATTGGGACA-TTAGGACATTACATTTTGAGTTCATGGTAGGATTAT-TTCTTCCTCACATAGATTGAACATT-GTGGCTGCTGCTGTGTCAAATGTGTTTTGGTTTAATTTATCAGTACTATTTGGAATCTTG-TGGAAATACATGATTATTATGCACTTTCCCAGATAA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9136032 1616 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36224049 1430 -  36342412 I

a score=5500.000000
s hg38.chr14_KI270725v1_random    168448 1 +    172810 G
s panTro4.chrUn_GL393505          309658 1 +   1195001 G
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9137648 1 -  12672142 G
i panPan1.JH650621             I 1616 I 1550
s ponAbe2.chrUn                  5833187 1 +  72422247 G
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53552781 1 + 121039945 G
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145892855 1 - 170124641 G
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883247 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140810575 1 - 162156779 G
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36198473 1 +  58131712 G
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001078 1 - 132174527 G
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26825770 1 -  40214260 G
i canFam3.chr30                C 0 C 0
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e mm10.chr2                     58127047 0 - 182113224 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36224049 1430 -  36342412 I

a score=1085074.000000
s hg38.chr14_KI270725v1_random    168449 308 +    172810 AGACAATTTTGGCTCCTGATTATTTGCTTTTCCCTACATTTATATAACAGCAATCTCATGAAATCAAGCATTAGACCAGCATGTTATTGATTTGTGCATGAGGCA----ATTTGCACCTCTGAATTTCTTTCCTTTCTGATATCCTCAGATGCAAAATCTTGAAAAAGAGCATGCAGTC---AGACCTTTATTTGAT--TGTTTGATAATTGTTTTTC------CTCTCTGTTTCCATTAGCATT-ATTTGTGGAAGATCATAGCAGTGGGAGTTTTTGTCACAGAAATCTTGTGACCTTTGTGTTTGGTAGCTATAGACTGCG
s panTro4.chrUn_GL393505          309659 308 +   1195001 AGACAATTTTGGCTCCTGATTATTTGCTTTTCCCTATATTTATATAACAGCAATCTCATGAAATCGAGCATTAGACCAGCATGTTATTGATTTTCACATTAGGCA----ATTTGCACCTCTGAATTGCTTTCCTTTCTGATATCCCCAGATGCAAAATCTTGAAAAAGAGCATGCAGTC---AGACCTTTATTTGAT--TGTTTGATAATTGTTTTTC------CTCTCTGTTTCCATTAGCATT-ATTTGTGGAAGACCATAGCAGTGGGAGTTCTTGTCACAGAAATCTTGTGACCTCTGTGTTTGGTAGCTATAGACTGCA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833188 308 +  72422247 AGACAATTTTGACTCCTGATTATTTGCTTTTCCCTACATTTATATAACAGCAATCCCATGAAATTGAGCATTAGACCAGTATGTTATTGATTTGCACATTAGGCA----ATTTGCACCTCTGAATTGCTTTCCTTTCTGATATCCTCAGATGAAAGATCTTGAAAAAGAGTATGCAGTC---AGACCTTTATTTGAT--TGTTTGATTATTGTTTTTC------CTCTCTGTTTCCATTAGCGTT-ATTTGTGGAAGACCACAGCAGTGGGAGTTCTTGTCACAGAAATCTTGTGACCTCTGTGTTTGGTAGCTATAGACTGCA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53552782 311 + 121039945 AGACAATTTTGGCTCCTGATTATTTGCTTTTCCCTACATTTATATAACAGCAATCTCACGAAATCGAGCGTTAGACCAGCATGTTATTGATTTGCACATTAGGCATGTGATT---ACCTCTGAATTGCTTTCCTTTCTGATATCCTCAGATGCAAAATCTTGAAAGAGAGCATGCAGTC---AGACATTTATTTGATTCTGTTTGATAATAGTTTTTC------CTCTCTGTTTCTGTTAGCATT-ATTTGTGGAAGACCATAGCAGTGGGAGTTCTTGTCACAGAAATCTTGTGACCTCTGCGTTTGGTAGCTATAGACTGCA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145892856 311 - 170124641 AGACCATTTTGGCTCCTGATTATTTGCTTTTCCCTACATTTATATAACACCAATCTCATGAAAT-GAGCATTAGACCAGCATGTTATTGATTTACACATTAGGCATTTGATT---ACCTCTGAATTGCTTTCCTTTGTGATATCCTCAGATACAAAATCTTGAAAGAGAGCATGCAGTC---AGACATTTATTTGATTCTGTTTGATAATTGTTTTTC------CTCTCTGTTTCCGTTAGCATTAATTTGTGGAAGACCATAGCAGTGAGAGTTCTTGTGACAGAAATCTTGTTACCTCTGCATTTGGTAGCTATAGACTGCA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883248 311 - 171882078 AGACCATTTTGGCTCCTGATTATTTGCTTTTCCCTACATTTATATAACACCAATCTCATGAAAT-GAGCATTAGACCAGCATGTTATTGATTTGCACATTAGGCATTTGATT---ACCTCTGAATTGCTTTCCTTTGTGATATCCTCAGATACAAAATCTTGAAAGAGAGCATGCAGTC---AGACATTTATTTGATTCTGTTTGATAATTGTTTTTC------CTCTCTGTTTCCGTTAGCATTAATTTGTGGAAGACCATAGCAGTGAGAGTTCTTGTGACAGAAATCTTGTTACCTCTGCATTTGGTAGCTATAGACTGCA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140810576 311 - 162156779 AGACCATTTTGGCTCCTGATTATTTGCTTTTCCCTACATTTATATAACACCAATCTCATGAAATCGAGCATTAGACCAGCATGTTATTGATTTGCACATTAGGCATTTGATT---ACCTCTGAATTGCTTTCCTTTAtgatatcctcagatacaaaatCTTGAAAGAGAGCATGCAGTC---AGACATTTATTTGATTCTGTTTGATAAttgtttttc------ctctctgtttccGTTAGCATT-ATTTGTGGAAGACCATAGCAGTGAGAGTTCTTGTGACAGAAATCTTGTTACCTCTGCATTTGGTAGCTATAGACTGCA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36198474 311 +  58131712 AGACAATTTTGGCTCCTGATTATTTGCTTTTTCCTACATTTATATAACACCAATCTCATGAAATGGAGCATTAGACCAGCATGTTATTGATTTACACATTAGGCATTTGATT---ACCTCTGAATTGCTTTCCTTTATGATATCCTCAGATGCAAAATCTTGAAAGAGAGCATGCAGTC---AGACATTTATTTGATTCTGTCTGATAATTGTTTTTC------CTCTCTGTTTCCGTTAGCATT-ATTTGTGGAAGACCATAGCAGTGAGAGTTCTTGTGACAGAAATCTTGTTACCTCTGCATTTGGTAGCTACAGACCGCA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001079 314 - 132174527 AGACAATTTTGGCTCCTGATTATTTGCTTTTGCCTACATTTATATAACACTAATCTCATGAAATCGAGCATTAGACCAGCATGTTATTGATTTACACATTAGGCATGTGATT---ACCTCTGAATTGCTTTCCTTTATGATATCCTCAGATGCAAAATCTTGAAAGAGAGCATGCAGTCAGAAGACATTTATTTGATTCTGTTTGATAATTGTTCTTC------CTCTCTGTTTTGGTTAGCATA-ATCTGTGGAAGACCATAGCAGTGAGAGTTCTTGTGACAGAAATCTTGTGACCTCTGCATTTGGTAGCTGTAAACCGCA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127047 280 - 182113224 AGACCATTCTGCTTCGGGATTACTCACTTTTGTGTGCATT--TGTCACATTAACTTCATGAAGTCATGGGTCACA------------------GCACATCAGACG--TGTTC---ATTTCTGAACAGCTTTCTTTTATGATA-ACTCTGTTTCATTGTCTGACCAGAAAA-ATTCCATT---ACAATTTTGCATGGTTCAGTTTGATACTTGATG------------TCTATTTTAGGCAGTGTT-CCTTATCAATGATGATTGCAGTAAGA-CGCCTCTGGCAAAACCTTACTGTGTTTTGTGCATAATAGTCATATACTGTT
i mm10.chr2                    C 0 I 106
s canFam3.chr30                 26825771 314 -  40214260 GGACAATTTTGCTTCCTGATTGTTTTCTTTTGCCTGCTTTTATGTGGCACTGATCTAGTAAAGTCAAGCATTAGACCAGTGTG---TTTATTTTCACATTAGGCATGTGATT---ACCTATGAATTGCTTTTCTCTATGACATTCTCAGATGTAAAGCCTTGAAAGAGAGAATGTGGTC---AGACCCTTATTTGATTTTGTTTGATAATAATTTTGCGTCTGTTTCTCAGTTTCAGTTGGCATC-ACTTATGGAAGACTCTAGCAGTAAGAGCTCTTAGAACAGTGATCTTGTGACTTCTATATATGACAACTGGAGGCTTCA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36224049 1430 -  36342412 I

a score=817219.000000
s hg38.chr14_KI270725v1_random    168757 255 +    172810 ATGAGTTTATCTCTTCATAGAGGAAATTGAGAAGAGATTACAGCTACCCACTACCCACACTCTGGTTTTCTTTATGAAGCTTCTGCATAAATCACAACTACATAGCTTCAATGACGGA-CCTAACTCTTGCTTGGAA-------------------------------------------------------------GTGTGGCAGCAGA-GTTGATGGTCATGGATTTAAGCTACAGTCTCATCACTAGTTTATTTACAGTAAACACTCTGGGGGTGACTTTTAGTGCTAGGTTCTGTGCTAGACTCTGGTGTTGA
s panTro4.chrUn_GL393505          309967 255 +   1195001 ATGAGTTTATCTCTTCATAGGGGAAATTGAGAAGAGATTACTGCTACCCACTACCCAAGCTCTGGTTTTCTTTACAAAGCTTCTGCATAAATCACAACTACATAGCTTCAATGACGGA-CCTAACTCTTGCTTGGAA-------------------------------------------------------------GGGTGGCAGCAGA-GTTGATGGTCGTGGATTTAAGCTGCAGTCTCATCACTAATTTATTTATAGTAAACACTCTGGGGGTGATTTTTAGTGCTAGATTCTGTGCTAGACTCTGGTGTTGA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833496 255 +  72422247 ATGAGTTTATCTCTTCATAGGGGAAATTGAGAACAGATTACTGCTACCCACTACCCAAGCTCTGGTTTTCTTTACAAAGCTTCTGCATAAATCACAACTACATAGCTTCAATGACGGA-TGTAACTCTTGCTTGTAA-------------------------------------------------------------GTGTGGCAGCAGA-GTTGATGGTCATGGATTTAAGCTACAGTCTCATCACTAGTTTATTTATAGTAAACACTCTGGGGGTGACTTATAGTGCTAGATTCTGTGCTAGACTCTGGTGTTGA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553093 251 + 121039945 ATGAGTTTATCTCTTCATAGGGGAAGTTGAGAAGAGATTACTGCTACCCACTACCCAAGCTCTGGTTTTCTTTACAAAGCTTCTGCATAAATGACAACTACATAGCTTCAGTGAGGGA-CATAACTCTTGCTTCGAA-------------------------------------------------------------GTGTGGCAGCAGA-GTTGATGGTCATGGATTTAAGCTGCAGTCTCATCACTAATTTACTTATAGTAAATATTCTGGAGGTGAC----AGTGCTAGATTCTGTGTCAGACTCTGGTGTTGA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893167 246 - 170124641 ATGAGTTTATCTCTTCATAGGGGAAATTGAGAAGAGATTACTGCTACCCACTAGCCAAGGTCTGGTTTTCTTTACAAAGCTTCTGCATAAATGACAACTACATAGCTTCAATGAGGGA-TCTAACTCTTTCTTGGAA-------------------------------------------------------------GTGTGGCAGCTAA-GTTGATGGTCATGGATTTAAGCTACAGTCTAATCAC---------TACAGTAAACATTCTGGGGGTGACTTTTAATGCTAGATTATGTGCTACACTCTCGTGTTGA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883559 246 - 171882078 ATGAGTTTATCTCTTCATAGGGGAAATTGAGAAGAGATTACTGCTACCCACTAGCCAAGGTCTGGTTTTCTTTACAAAGCTTCTGCATAAATGACAACTACATAGCTTCAATGAGGGA-TCTAACTCTTTCTTGGAA-------------------------------------------------------------GTGTGGCAGCTAA-GTTGATGGTCATGGATTTAAGCTACAGTCTAATCAC---------TACAGTAAACATTCTGGGGGTGACTTTTAATGCTAGATTATGTGCTACACTCTCGTGTTGA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140810887 246 - 162156779 ATGAGTTTATCTCTTCATAGGGGAAATTGAGAAGAGATTACTGCTACCCACTACCCAAGGTCTGGTTTTCTTTACAAAGCTTCTGCATAAATGACAACTACATAGCTTCAATGAGGGA-TCTAACTCTTACTTGGAA-------------------------------------------------------------ATGTGGCAGCTAA-GTTGATGGTCATGGATTTAAGCAACAGTCTAATCAC---------TACAGTAAACATTCTGGGGGTGACTTTTAGTGCTAGATTATGTGCTACACTCTGGTGTTGA
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36198785 246 +  58131712 ATGAGTTTATCTCTTCATAGGGGAAATTGAGAAGAGATTACTGCTACCCACTACCCAAGCTCTGGTTTTCTTTACAAAGCTTCTGTGTAAAAGACAACTACATAGCTTCATTGAGGGA-TCTAACTCTTGCTTGGAA-------------------------------------------------------------GTGTGGCAGCTAA-GTTGATGGTCATGGATTTAACCTACAGTCTCATCAC---------TACAGTAAACATTCTGGGGGTGACTTTTAGTGCTAGATTATGTGCTACACTCTGGTGTTGA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001393 251 - 132174527 ATGAGTTTATTTCTTCATACGGGAAATGGAGAAGAGATTACTGCTACCCACTACCCAAGCTCTGGTTTTCATTGTAAAGCTTCTGCAAAAGTGATAATTGCATAG-TTCAATGAGGGT-CATAACTCTTGCTTGCAA-------------------------------------------------------------GTGTGGTGGCAGA----GATGGTCATGGATTTAAGCTACAGACTAATCACTAATTTATTTATAGTAAACATTCTAGGGGTGACTTTTAGTGCTAGATACTGTGCTAGACTCTAGTGTTGA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127433 316 - 182113224 cTGTGTTTGTGTGTTTATATGGGAAGTAGAGAAATGGTTGATATCATCAATT-TCCAAGTTTTTGTTTGC-CTGCTAAACATCTGCATAAATGACAGCAGCCTGGCTTCAGTAAGAGAGCTTTCCTCTTGCTCGCAATTTTCATTCTTAAATTCAGTGAGATCTGTATAACTCACATATTCAAAGCACAGGAAAATTTATGCAGCATCTGAAATTGATGATTTTGAACTTAGTCTCCAATTTAATCACCAGTCCACTCAGGATGAACATTCTGGGGATGCATTTTAGTGCTAGGTACTGGGCTGTGTTTCCTAATTGA
i mm10.chr2                    I 106 C 0
s canFam3.chr30                 26826085 232 -  40214260 CTGAGTTTGTCTTTTTGTATAGGAAGCAGAGAAGAGATTACTGTT----GCTACCAGAGCTCTCATTTTGGTTATAATGCTTTTGCACAAGTAACATC-GCACAGCTTCATTGGAGGT-CCTAAATCTTGAT-GAAT-------------------------------------------------------------GGATGGCAACTGA-GTTGCTGGTTATAGATTTATGTTAGAATCTAATCACTAGTTAATTCATAATAAACATTGTGGGCATGACTGT-----------------ATAGACTATGATATTTA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36224049 1430 -  36342412 I

a score=146363.000000
s hg38.chr14_KI270725v1_random    169012 47 +    172810 AATATGTATCAGCTA-------TGGCCTCA------GATCTCAAGGCATTAGTTGTGTTT
s panTro4.chrUn_GL393505          310222 47 +   1195001 AATATGTGTCAGCTA-------TGGCCTCA------GCTCTCAAGGGATTAGTTGTGTTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833751 47 +  72422247 AATATGTGTCAGCTA-------TGGCCTCA------GCTCTCAAGGCATTAGTTGTGTTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553344 47 + 121039945 AATATGGGTCAGCTA-------TGGCCTCA------GCTCTCAAGGCATTAGTtgtgttt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893413 47 - 170124641 AATATATGTCAGCTA-------TGGCCTCA------GCTCTCAAGGCATTAGTTGTGTTT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883805 47 - 171882078 AATATATGTCAGCTA-------TGGCCTCA------GCTCTCAAGGCATTAGTTGTGTTT
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811133 47 - 162156779 AATATATATCAGCTA-------TGGCCTCA------GCTCTCAAGGCATtagttgtgttt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199031 47 +  58131712 AATATATGTCAGCTA-------TGGCCTCA------GCTCTCAAGGCATTAGTTGTGTTT
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001644 47 - 132174527 AATATGTGTCAGCTA-------TGGCCTTA------GCTCTCAAAGCATTAGTTGTGTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127749 57 - 182113224 AGTATGTACAAACTGACTTCATTAGCCTCAAAAACTACTCTCC---CCTCCTCTCTCTTT
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26826317  0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I
e otoGar3.GL873530              36224049 1430 -  36342412 I

a score=5500.000000
s hg38.chr14_KI270725v1_random    169059 1 +    172810 G
s panTro4.chrUn_GL393505          310269 1 +   1195001 G
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833798 1 +  72422247 G
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553391 1 + 121039945 g
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893460 1 - 170124641 G
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883852 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811180 1 - 162156779 g
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199078 1 +  58131712 G
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001691 1 - 132174527 G
i calJac3.chr10                C 0 C 0
s otoGar3.GL873530              36225479 1 -  36342412 G
i otoGar3.GL873530             I 1430 N 0
s mm10.chr2                     58127806 1 - 182113224 G
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26826317 0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=217966.000000
s hg38.chr14_KI270725v1_random    169060 71 +    172810 TTTGTATTGTGTGTTTTGAGGGAGGTGTTAGGTTTTGGTTGAAAGAACAAGGAAGGGGAGCAAGATTTGAG
s panTro4.chrUn_GL393505          310270 71 +   1195001 TGTGTATTGTGTGTTTTGAGGGAGGTGTTAGGTGTTGGTTGAAAGAATGAGGAAGGGGAGCAAGATTTGAG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833799 71 +  72422247 TGTGTATTGTGTGTTTTGAGGGAGGTGTTAGGTGTTGGTTGAAAGACTGAGGAAGGGGAGCAAGATTTGAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553392 71 + 121039945 tgtgtattgtgtgttttgagggaggtgttaggtgttggtTGAAAGAAAGAGGAAGGAGAGCAAGGTTTGAG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893461 71 - 170124641 TGTGTAGTGGGTGTTTTGAGGGAGGTGTTAGGTGTTGGTTGAAAGAATGAGGAAGGAGAGCAAGATTTGAG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883853 71 - 171882078 TGTGTAGTGGGTGTTTTGAGGGAGGTGTTAGGTGTTGGTTGAAAGAATGAGGAAGGAGAGCAAGATTTGAG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811181 71 - 162156779 tgtgtattggGTGTTTTGAGGGAGGTGTTAGGTGTTGGTTGAAAGAATGAGGAAGGAGAGCAAGATTTGAG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199079 67 +  58131712 TGTGTAGTGGGTGTTTTGAGGGAGGTGTTAGGTGTTGG----AAGAATGAGGAAGGAGAGCAAGATTTGAG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001692 71 - 132174527 AGTGTATTGTGTGTTTTGAGGGGGGTGTTAGGTATTGGTTGAGAGGATGAGGAAGGAGAGCAAGATTTGAG
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127807 69 - 182113224 TGTATGTTGACTATACTTATGTGTGTG-TATGCTTAAGTAAGGAGGATAAGGAACAATAGCAAG-TTTGAC
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e canFam3.chr30                 26826317  0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=64962.000000
s hg38.chr14_KI270725v1_random    169131 22 +    172810 GAGAAAACAAACATGCACACGT
s panTro4.chrUn_GL393505          310341 22 +   1195001 GAGAAAACAAACATGCACACCT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833870 22 +  72422247 GAGAAAACAAACATGCACACGT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553463 22 + 121039945 GAGAAAACAAACATGTACACGT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893532 22 - 170124641 GAGAAAACAAACATGTACACAT
i rheMac3.chr7                 C 0 I 1
s macFas5.chr7                 147883924 22 - 171882078 GAGAAAACAAACATGTACACAT
i macFas5.chr7                 C 0 I 1
s papAnu2.chr7                 140811252 22 - 162156779 GAGAAAACAAACATGTACACGT
i papAnu2.chr7                 C 0 I 1
s chlSab2.chr26                 36199146 22 +  58131712 GAGAAAACAAACATGTACACAT
i chlSab2.chr26                C 0 I 1
s calJac3.chr10                108001763 21 - 132174527 GAGAAAACAAACATGTACATG-
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127876 22 - 182113224 AGGGCATAAAAAATTCACATAT
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26826317 18 -  40214260 GACTAGACTATCATATAC----
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130420817 5449 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=3785.000000
s hg38.chr14_KI270725v1_random    169153 1 +    172810 A
s panTro4.chrUn_GL393505          310363 1 +   1195001 A
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833892 1 +  72422247 A
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553485 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893555 1 - 170124641 A
i rheMac3.chr7                 I 1 C 0
s macFas5.chr7                 147883947 1 - 171882078 A
i macFas5.chr7                 I 1 C 0
s papAnu2.chr7                 140811275 1 - 162156779 A
i papAnu2.chr7                 I 1 C 0
s chlSab2.chr26                 36199169 1 +  58131712 A
i chlSab2.chr26                I 1 C 0
s nasLar1.chr7                 130426266 1 - 153844193 A
i nasLar1.chr7                 I 5449 I 2659
s calJac3.chr10                108001784 1 - 132174527 A
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127898 1 - 182113224 G
i mm10.chr2                    C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e canFam3.chr30                 26826335 0 -  40214260 C
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=236431.000000
s hg38.chr14_KI270725v1_random    169154 72 +    172810 CGTGGTTTCAT-----------TGAATAATCTGCACTTCTGAATTGTCAATACATCAATCTGATTCAGTCATA-ATTGAATTAG
s panTro4.chrUn_GL393505          310364 72 +   1195001 CATGGTTTCAT-----------TGAATAATCTGCACTGCTGAATTGTCAATACATCCATCTGTTTCAGCCATA-ATTGAATTAG
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833893 72 +  72422247 CATGGTTTCCT-----------TGACTAATCTGCACTTCTGAATTCTCAATACATCCATCTGATTCAGTCATA-ATTGAATTAG
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553486 72 + 121039945 CATGGTTTCAT-----------TGAATAATCTGCACTTCTGAAATGTCAATACATCCATCTGATTCAGTCATA-ATTGAATTAG
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893556 72 - 170124641 CATAGTTTCAC-----------TGAATAATCTGCACTTCTGAAATGTCAATACATTCATCTGATTCAGTAATA-ATTGAATTAG
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147883948 72 - 171882078 CATAGTTTCAC-----------TGAATAATCTGCACTTCTGAAATGTCAATACATTCATCTGATTCAGTAATA-ATTGAATTAG
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811276 72 - 162156779 CATAGTTTCAC-----------TGAATAATCTGCACTTCTGAAATGTAAATACATTCATCTGATTCAGTAATA-ATTGAATTAG
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199170 72 +  58131712 CATAGTTTCAC-----------TGAATAATCTGCACTTCTGAAATGTCAATACATTCATCTGATTCAGTAATA-ATTGAACTAG
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001785 72 - 132174527 CATGGTTTCAT-----------TGAATACTCTGCACTTTCAAAATGCCAGTACATCCATCTAATTCAGTCATA-ATTGAATTAA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127899 83 - 182113224 -TCAGTTTTACAAGGAGTCAAGTTTGTAGTATATCTTTTTGAAATGCCAATGTACCCATCTGATTCAGTCATATGATAAATTGG
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26826335 53 -  40214260 ------------------------------CTGTACCTATGAAATGCCAGCACACCCATCTGATTCAATAAGA-ACTGAACTTG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e gorGor3.chr7                  58834918 3445 + 158137892 I
e nasLar1.chr7                 130426267 2659 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=21159.000000
s hg38.chr14_KI270725v1_random    169226 8 +    172810 AATCATCC
s panTro4.chrUn_GL393505          310436 8 +   1195001 AATCATCC
i panTro4.chrUn_GL393505       C 0 C 0
s gorGor3.chr7                  58838363 8 + 158137892 AATCATCC
i gorGor3.chr7                 I 3445 N 0
s ponAbe2.chrUn                  5833965 8 +  72422247 AAACATCC
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553558 8 + 121039945 CATCATCC
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893628 8 - 170124641 AATCTTCC
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147884020 8 - 171882078 AATCTTCC
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811348 8 - 162156779 AATCTTCC
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199242 8 +  58131712 AATCTTCC
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001857 8 - 132174527 AAACATCC
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127982 7 - 182113224 AACAATG-
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26826388 8 -  40214260 AATCATTG
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=1257078.000000
s hg38.chr14_KI270725v1_random    169234 399 +    172810 TGAGCGCCGGTGGAAAACATTGAAT-ATTTTTTTTCacact--gaagccagaactcttgggtaccataacccagcaata---ttgtttgctggc--tgtcacttaaactcccaaaacacctctgttttatcatctataataaatacaggtacaatattctgttttttatatatgtatatatcttgcaaaattattgagatgatgaaaaacg-aaatgt-aatacacactgaataatgcatagtagatggtaagcactaaataaatgGCTATGTAACCAGTGATTCCTGTCTTTGTTATCTTCATTATTAAAATTTCTACATAGGTTTTATTTCAGGGA-tttttagagta--------------------atgactttgcttattttat---aaaaatacttcatg-------------------------cca--------aaga----------------gtacaaagaaaaca---------------aaataa
s panTro4.chrUn_GL393505          310444 395 +   1195001 CAAGCAGTGGTGGAAAACATTGAAT--TTTTTTTTCacact--gaagccagaactcttgggtaccataacccagcaata---ttgtttgctggc--tgtcacttaaactcacaaaacacctctgttttatcatctataataaatagagatacaatattctg--ttttatatatgtatatatattgcaaaattattgtgatgatgaaaaaca-aaatgt-aatacacactgaataatgcatagtagatggtaagcactgaataaatgGCTATGTAAGCAGTGATTCCTCTCTTTGTTATCTTCATTATTACAATTTCTACATAGGTTttatttcagtga-tttttatagta--------------------atgactttgcttattttat----aaaatacttcatg-------------------------cca--------aaga----------------gtacaaagaaaaca---------------aaataa
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5833973 398 +  72422247 TGAGCGGCGGTGGAAAACATTGAAT--TTTTTTTTTGCAct--gaagctagaactcttgggtaccataacctagcaata---ttgtttgctggc--tgtcacttaaactcacaaaacacctctgttttatcatctataataaatacagatacaatattctgttttatatatatgtatatatcttgcaaaattattgtgatgatgaaaaacg-taatgt-aatagacactgaataatgcatagtagatggtaagcactaaataaatggCTATGTAAGCAGTGATTCCTCTCTTTGTTATCTTCATTATTACAATTTCTACATAGGTTTTATTTCAGTGA-TTTTTATAGTA--------------------ATGACTTtgcttattttat---aaaaatacttcatg-------------------------cca--------aaga----------------gtacaaagaaaaca---------------aaataa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553566 393 + 121039945 TGAGTGGCGGTGGAAAACATTGAAT-TTTTTTTTTCacact--gaagccagaactcttgggtaccataacccagcaata---ttgtttgctggc--tgtcacttaaactcacaaagcacctctgttttatcatctataataaatacagatacaatattctgttttatatatatgtatatatcttgcaaaattattgtgataatgaaaaacg-aaatgt-aatacacactgaataatgcatagtagatggtaagcactaaataaatgGCTATGTAAGCAGTGATTCCTC----TGTTATCTTCATTATTACAATTTCTGCATAGGttttatttcagtga-tttttatagta--------------------atgac--tgcttattttat---aaaaatacttcatg-------------------------cca--------aaga----------------gtacaaagaaaaca---------------aaataa
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145893636 404 - 170124641 TGAGTGGTGGTGGAAAATATGGAAT-ATTTCTTTTCacact--gaagccagaactcttgggtaccataatccagcaatg---ttgcttgctggt--tgtcacttaaagtcacaaagcacctctgttttatcatatataataaatacagatacaatattctgttttatatgtatgtatatatcttgcaaaattattg---tgatgaaaaaca-aaatgt-aatacacactgaataatgcatagtagatggtaagcactaaataaatgGCTATGTAAGCAGTGATTCCTCTCTTTGTTATCTTCATTATTATAATTTCTGCATAGGTTttatttcagtga-tttttatagta--------------------aagactttgcttattttat---aaaaatacttcatg-------------------------ccacagagtttcaga----------------gtacaaagaaaaca---------------aaataa
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147884028 396 - 171882078 TGAGTGGTGGTGGAAAATATGGAAT-ATTTCTTTTCacact--gaagccagaactcttgggtaccataatccagcaatg---ttgcttgctggt--tgtcacttaaagtcacaaagcacctctgttttatcatatataataaatacagatacaatattctgttttatatgtatgtatatatcttgcaaaattattg---tgatggaaaaca-aaatgt-aatacacactgaataatgcatagtagatggtaagcactaaataaatgGCTATGTAAGCAGTGATTCCTCTCTTTGTTATCTTCATTATTATAATTTCTGCATAGGTTTTATTTCAGTGA-TTTTTATAGTA--------------------AAGACTTtgcttattttat---aaaaatacttcatg-------------------------cca--------caga----------------gtacaaagaaaaca---------------aaataa
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811356 399 - 162156779 TGAGTGGTGGTGGAAAATATGGAAT-ATTTCTTTTCACACT--GAAGCCAGAACTCTTGGGTACCATAATCCAGCAATG---TTGCTTGCTGGC--TGTCACTTAAAGTCACAAAGCACCTCTGTTttatcatatataataaatacagttacaatattctgttttatatgtatgtatatatcttgCAAAATTATTGtgatgatgaaaaaca-aaatgt-aatacaCACTGAATAATGCACAGTAGATGgtaagcactaaataaatggCTATGTAAGCAGTGATTCCTCTCTTTGTTATCttcattattataatttctgCATAGGTTTTATTTCAGTGA-TATTTATAGTA--------------------AAGACTttgcttattttat---aaaaatacttcaTG-------------------------CCA--------CAGa----------------gtacaaagaaaaca---------------aaataa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199250 398 +  58131712 TGAGTGGGGGTGGAAAATATCGAAT-ATTTCTTTTCacact--gaagccag-actcttgggtaccacaatccagcaata---ttgtttgctggc--tgtcacttaaagtcacaaagcacctctgttttatcatctataataaatacagatacaatattctgttttatatgtatgtatatatcttgcaaaattattgtgatgatgaaaaacg-aaatgt-aatacacactgaataatgcatagtagatggtaagcactaaataaatgGCTGTGTAAGCAGTGATTCCTCTCTTTGTTATCTTCATTATTATACTTTCTGCATAGGTTTTATTTCAGGGA-TTTTTATAGTA--------------------AAGACTTtgcttattttat---aaaaatacttcatg-------------------------cca--------aaga----------------gtacaaagaaaaca---------------aaataa
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108001865 442 - 132174527 TGAGTGGAAGTGGAACACATTGAGT-AGTTTTTTTCacact--gaagccagaactcttgggtgccatgacccagcaata---ttgtttgctggc--tgtcacttaaactcacaaagtacctcagttttatcatctataataaatacagatacattattctgttttatatatatgtatatatcttgcaaaattattgtaatgatgaaaaaca-aaatgt-aatacacactgaataatgcatagaagatggtaagcactaaataaatgACGATGTAAACAGTGATTCCTCT-TTTGTTATTTCCATTATTACAATTTCTGCATAGATTTTATTTCAGTGACTTTCTACAGTA--------------------ATAACTTTGCTTATTTTATTAAAAAAAAACTTCATGCTTAATATTTTAAAATTGAGCAATACCA--------AAGA----------------CTACAAaaataataaataaataaataaataaataa
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58127989 383 - 182113224 TGAATGCTTCTAGGACATACAGA-----TTCCTGCTACACTTGGACATCAGCACACATAGATACCACATCCTAGAAACACATCTGTTTGCTA----------------TGCCATAGCACCTGCATTTTACTATGCAT--TGAAT--AGGTATAAAATT-TATTTTATATGCCT-----CACCT---AAAGTTATTGTGATAATTAAAAACACTAATAT-AATACAAACAGAATTATGGATAATA-----TAAGTACCAAATAAG-AGCTATGAAACAA-------CTGTTTTTATTATTTTCATTGTTATAATACCTGTATGGATCTCATTTAGTTGA--TTTTATAGCA--------------------ATGGTTTTCCCTTTTTAAT---AAAAATGCCatatatttaatata----------------tta--------aaaattGAGCAATAGTGAATGTGCAAAGAAAA-----------------AATCAA
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26826396 381 -  40214260 TAGGTGGCAGTGGATTATATCAGATTTTTTTCTTTCAGACT----------------TGGGAACCATATCCCAACAATA--TTTGTCTGttggttatgccacttgaactcacaaaacacttctgtttactcatt-----taaaaatag-----atattctgttttataggctt------cacttgtaaagttattgtcatgattagaaaat-aaatatggatggatacacagtaatgcataatatacagtaggtactaaataaGCTACTAT------ACCTATTACTTT-TTTGTTATTTTCATCAT---AATTCAT------GTTTCATCTAAGTGA-TTTTTGTAGTAACTTTACTTTTGAATACTACATGCTTATTCttattattt---taaaatttttaacagt-----------------------tta--------taaa----------------ataaGAAACAAGGAG--------------AAACAA
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=12485.000000
s hg38.chr14_KI270725v1_random    169633 3 +    172810 atc
s panTro4.chrUn_GL393505          310839 3 +   1195001 atc
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834371 3 +  72422247 atc
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553959 3 + 121039945 atc
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894040 3 - 170124641 atc
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147884424 3 - 171882078 atc
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811755 3 - 162156779 atc
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199648 3 +  58131712 atc
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002307 3 - 132174527 atC
i calJac3.chr10                C 0 C 0
s micMur1.scaffold_15125           33878 3 -     50199 GGC
i micMur1.scaffold_15125       N 0 N 0
s mm10.chr2                     58128372 3 - 182113224 ATC
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26826777 3 -  40214260 GTT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=45912.000000
s hg38.chr14_KI270725v1_random    169636 12 +    172810 aacccaaatttt
s panTro4.chrUn_GL393505          310842 12 +   1195001 accccaaatttt
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834374 12 +  72422247 accccaaatttt
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553962 12 + 121039945 accccaaatttt
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894043 12 - 170124641 accccaaatttt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147884427 12 - 171882078 accccaaatttt
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811758 12 - 162156779 accccaaatttt
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199651 12 +  58131712 accccaaatttt
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002310 12 - 132174527 GCTCCAAATTTT
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58128375 12 - 182113224 ACCAAAAATTTC
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26826780 12 -  40214260 ACCCAGAATTGC
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I
e tarSyr2.KE933570v1              112527 4503 +    145891 I

a score=3036.000000
s hg38.chr14_KI270725v1_random    169648 1 +    172810 t
s panTro4.chrUn_GL393505          310854 1 +   1195001 c
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834386 1 +  72422247 c
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553974 1 + 121039945 c
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894055 1 - 170124641 c
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147884439 1 - 171882078 c
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811770 1 - 162156779 c
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199663 1 +  58131712 c
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002322 1 - 132174527 C
i calJac3.chr10                C 0 C 0
s tarSyr2.KE933570v1              117030 1 +    145891 t
i tarSyr2.KE933570v1           I 4503 N 0
s mm10.chr2                     58128387 1 - 182113224 T
i mm10.chr2                    C 0 C 0
s canFam3.chr30                 26826792 1 -  40214260 C
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=26088.000000
s hg38.chr14_KI270725v1_random    169649 11 +    172810 agaaacaacca
s panTro4.chrUn_GL393505          310855 11 +   1195001 agaaacaataa
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834387 11 +  72422247 agaaacaacca
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553975 11 + 121039945 agaaacaacca
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894056 11 - 170124641 agaaaaaaaca
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147884440 11 - 171882078 agaaaaaaaca
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811771 11 - 162156779 agaaaaaaaca
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199664 11 +  58131712 agaaaaaaaca
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002323 10 - 132174527 A-AAATAATCA
i calJac3.chr10                C 0 C 0
s mm10.chr2                     58128388 11 - 182113224 GAAAAGAGCCA
i mm10.chr2                    C 0 N 0
s canFam3.chr30                 26826793 11 -  40214260 AGATATAACCT
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=161048.000000
s hg38.chr14_KI270725v1_random    169660 57 +    172810 atgttaactgttggtggaattca-ttTGGGTGA-TTTTT--T---TTGTTTCTTCTTTGCACT-T
s panTro4.chrUn_GL393505          310866 58 +   1195001 atgttaacagttggtggaattca-tttgggtgatttttt--t---ttgtttcttctttacact-t
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834398 60 +  72422247 atgttaacagttggtggaattca-tttgggtgatttttttgt---ttgtttcttctttgcact-t
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53553986 61 + 121039945 atgttaacagttggtggagttca-tttgggtgatttttt--tttgttgtttcttctttgcact-t
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894067 57 - 170124641 atgttaacagttggtggaATGCA-TTTGGGTGA-TTTTT--T---TTGTTTCTTCTTTGCACTT-
i rheMac3.chr7                 C 0 M 189
s macFas5.chr7                 147884451 56 - 171882078 atgttaacagttggtggaatgca-tttgggtga-ttttt--t---ttgtttcttctttgcact--
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811782 56 - 162156779 atgttaACAGTTGGTGGAATTca-tttgggtga-ttttt--t---ttgtttcttctttgcaCT--
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199675 56 +  58131712 atgttaacagttggtggaattca-tttgggtga-ttttt--t---ttgtttcttctttgcact--
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002333 59 - 132174527 ATGTTAACAGTTGGTAGAATTCA-TTTGGGCGA-TTTTTTGT---TTATTTGTTCTTTGCATT-T
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26826804 51 -  40214260 GTGTTGA--GCTGGCAAAATTCATTTTGGATTA--------T---TTATTTCTTCTTTGTACT-T
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=451982.000000
s hg38.chr14_KI270725v1_random    169717 190 +    172810 TTTGGTATTTTTCAAGTTTAAAAGGAATAAGTAGATACAATTATTATAATAGCTGTAAAATAGTTATATGTGTTTCAAATTTCATAC-TCCAAAAAGTTTGGATATAGATGGAAGATAACATAACTatatgtatagtgagagagagagagctagcagaatagata--aaacataattttataataaaagaata
s panTro4.chrUn_GL393505          310924 189 +   1195001 tttggtatttttcaagtttaaaaggaataagcacatacaattattataatagctgtaaaatagttatATGTGTTTCAAATTTCATAC-TCCAAAAAGTTTGGATATAGATGGAAGAT-ACATAATTATATGTATAGTGAGAGAGAGAGAGCTAGCATAatagata--aaaaataattttataataaaagagta
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834458 187 +  72422247 tttggtattattcaaatttAAAGGGAATAAGCACATACAATTATTATAATAGCTGTAAAATAGTTATATGTGTTTCAAATTTCATAC-TCCAAAAAGTTTGGATATAGATGGAAGat-acataactatatgtatagtgagagagagacagctagtagaatagata--aaaaataattttataat--aagaata
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53554047 187 + 121039945 tttggtattattcaagtttaaaaggaataagcacatacaattattataatagctgtaaaatagttatatgtgttttaaaTTTCATAC-TCCAAAAAGTTTGGATATAGATAGAAGAT-ACATAACtatatgtatattgagagagag--agctagcagaatagata--aaaaataattttataataaaagaata
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147884507 187 - 171882078 tttggtattattgaagtttaaaaggaataagcacatacaattattataatagctgtaaaatagttatATGTGTTTCAAATTTCATAC-TTCAGAAAGTTTGGATATAGATGGAAGAC-ACATAACTATATGTATATTGAGAGAGCG--AGCTAGCAGAATAGATA--AAAAATAATTTTATAATAAAAGAATA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140811838 187 - 162156779 TTTGGTATTATTCAAGTTTAAAAGGAATAAGCACATACAATTATTATAATAGCTGTAAAATAGTTATATGTGTTTCAAATTTCATAC-TTCAATAAGTTTGGATATAGATGGAAGAC-ACATAACTATATGTATATTGAGAGAGCG--AGCTAGCagaatagata--aaaaataattttataataaaagaata
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199731 186 +  58131712 tttggtattattcaagtttaaaaggaataagcacgtacaattattataatagctgtaaaatagttatATGTGTTTCAAATTTCATAC-TTCAAAAAGTTTGGATATAGATGGAAGAC-ACATAACTATATGTATATTGAGAGAGCG--AGCTAGCAGAATATATA--AAAAA-ATTTTTATAATAAAAGAATA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002392 185 - 132174527 TTTGGTATTATTCAAGTTTAAAAGGAATAAGCACATAACCTTATTATACTAGGTGTAAAATAGTTATATGTGTTTCAAATTTCATAC-TCCCAAAAGTTTGGATATATCTGGAagat-acatatctatgtgtatattgagagagag--ag--atcagaatagata--aaaaataattttaaaataagagaata
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26826855 167 -  40214260 TTTGGTG---TTCAAATTTAAAACTAATAAGTATGTAC--------TGTTAGTTGTAAA--AGTTACATATGTTTCAAATTTTACACATCCTAAAAGTCTGCAT-TGATTGGTAGAT-ATGTGTATAGATGGATATATAAAGAATA--------TAGAATACATAAGAAAAATAGTTTTATAATAAGAGA---
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I
e rheMac3.chr7                 145894124 189 - 170124641 M

a score=253458.000000
s hg38.chr14_KI270725v1_random    169907 88 +    172810 ctatatctgcttttttaattggaagtattaaatttaTCTATGTAACTGCATTATTTCCTAAAAGGTCACA-TTTTAA-----AAAAATTTTAAA-
s panTro4.chrUn_GL393505          311113 87 +   1195001 ctatatctgctttttaaattggaagtattaaatttaTCTATGTGACTGCATTATTTCCTAAAAGGTCACa--tttaa-----aaaaaaattaaa-
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834645 88 +  72422247 ctatgtctgcttttttaattggaagtattaaatttaTCTATGTGACTGCATTATTTCCTAAAAGGTCACa-ttttta-----aaaaaatttaaa-
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53554234 87 + 121039945 ctatatctgcttttttaactggaagtattaaatttatttatgtgaCTACATTATTTTCTAAAAGGTCACA--TTTAA-----AAAAATTTTTAA-
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894313 89 - 170124641 CTATATTTGCTTTTTTAACTGGAAGTATTAGATTTATTTAGGTAACTTCATTATTTCCTAAAAGGTCACatttttta-----aaaaaaattaaa-
i rheMac3.chr7                 M 189 C 0
s macFas5.chr7                 147884694 89 - 171882078 CTATATTTGCTTTTTTAACTGGAAGTATTAGATTTATTTAGGTGACTTCATTATTTCCTAAAAGGTCACATTTTTTA-----AAAAAAATTAAA-
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140812025 88 - 162156779 ctatatttgcttttttaactgGAAGTATTAGATTTATTTATGTGACTTCATTATTTCCTAAaaggtcata-ttttta-----aaaaaaattaaa-
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36199917 88 +  58131712 CTATATTTGCTTTTTTAACTGGAAATATTAAATTTATTTATATGACTTCATTATTTCCTAAAAGGTCACA-TTTTTA-----AAACAAATTTAA-
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002577 87 - 132174527 ctatatctgcttctttaactggaagtattaaatttttttatgtgactttaTTATTTCCTAAAAGGTCACa--tttta-----aaaaatatataa-
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26827022 85 -  40214260 ----GTCTACTATTTTAAATAAAAGGACTACATTTATTT-----ACTTCTttatttcctaaaagattata-cttttattaagaaaaaaatatgaa
i canFam3.chr30                C 0 C 0
e panPan1.JH650621               9137649 1550 -  12672142 I
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=15015.000000
s hg38.chr14_KI270725v1_random    169995 3 +    172810 AAA
s panTro4.chrUn_GL393505          311200 3 +   1195001 aaa
i panTro4.chrUn_GL393505       C 0 C 0
s panPan1.JH650621               9139199 3 -  12672142 aaa
i panPan1.JH650621             I 1550 N 0
s ponAbe2.chrUn                  5834733 3 +  72422247 aaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53554321 3 + 121039945 AAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894402 3 - 170124641 aaa
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147884783 3 - 171882078 AAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140812113 3 - 162156779 aaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36200005 3 +  58131712 AAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002664 3 - 132174527 aaa
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26827107 3 -  40214260 aaa
i canFam3.chr30                C 0 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=134506.000000
s hg38.chr14_KI270725v1_random    169998 43 +    172810 CATTA-------GAAGATTGAGTCATTATAATTTATTTCTTAAATTTTAA
s panTro4.chrUn_GL393505          311203 43 +   1195001 CATTA-------GAAGATTGAGTCATTCTAATTTATTTCTTAAATTTTAA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834736 43 +  72422247 CATTA-------GAAGATTGAGTCattataatttatttcttaaattttaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53554324 40 + 121039945 TACTA-------GAAGATTGAGTCA---TAATTTCTTTCTTAAATTTTAA
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894405 50 - 170124641 tattaGAAGACTGAAGACTGAGTCATTTTAATTTCTTTCTTAAATTTTAA
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147884786 43 - 171882078 TATTA-------GAAGACTGAGTCATTTTAATTTCTTTCTTAAATTTTAA
i macFas5.chr7                 C 0 C 0
s papAnu2.chr7                 140812116 43 - 162156779 tatta-------gaagattgagtcattttaatttctttcttaaattttaa
i papAnu2.chr7                 C 0 C 0
s chlSab2.chr26                 36200008 43 +  58131712 TATTA-------GAAGATTGAGTCATTTTAATTTCTTTCTTAAATGTTAA
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108002667 43 - 132174527 tatta-------GGAGATTGAATCATTACAGTTTCTTTCTTAAATTTTAG
i calJac3.chr10                C 0 C 0
s canFam3.chr30                 26827110 43 -  40214260 cagta-------ggtgattgaggcattataatttCCTTGTTAAATTTTAA
i canFam3.chr30                C 0 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=2152.000000
s hg38.chr14_KI270725v1_random      170041 1 +    172810 T
s ponAbe2.chrUn                    5834779 1 +  72422247 t
i ponAbe2.chrUn                  C 0 C 0
s nomLeu3.chr6                    53554364 1 + 121039945 T
i nomLeu3.chr6                   C 0 C 0
s rheMac3.chr7                   145894455 1 - 170124641 T
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                   147884829 1 - 171882078 T
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   140812159 1 - 162156779 t
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr26                   36200051 1 +  58131712 T
i chlSab2.chr26                  C 0 C 0
s calJac3.chr10                  108002710 1 - 132174527 C
i calJac3.chr10                  C 0 C 0
s tupBel1.scaffold_136028.1-3980      3756 1 -      3980 C
i tupBel1.scaffold_136028.1-3980 N 0 N 0
s canFam3.chr30                   26827153 1 -  40214260 T
i canFam3.chr30                  C 0 C 0
e nasLar1.chr7                   130426267 2659 - 153844193 I
e panTro4.chrUn_GL393505            311246 0 +   1195001 C

a score=1771103.000000
s hg38.chr14_KI270725v1_random    170042 640 +    172810 TATATGTATATCTA----------TGAATAATTTATGCATAAACAT-----ATATATTTAATGTCAAACCTTAGG-----AAAATGTATACACCTTAAGGAATTATCACAAAACAAATACCTCCACAACTACCACTCAGAATAACA--T-------GTTTTTTTTGCAAAATAGATTACTACTCCTTCATTTGTCTTCAAAGATACCCACTATTTGGAGTTTACTTTTCTTAATGTTTTGATATTTATATACCCACTCtgttgtaggccaataatgcctctgaaatgcatgtccatgtcttaatccatg-gagcctgaccttattt-gaagtagggcatttgcagatgtatttaagacatttgaggctgggcacagtggctcatgtctgtaatcccagcactttgaaaggccgaggcaggtggattcacctgaggtcaggagttcgagaccagcctggccaacatggtcaaaagcccgtatctaccaaaaatacaaaagttggctgggtgtggtggtggcggcgcctgtaatcccagctgctcgagagcctgaggcagggagaatcacttgaacat---aggaggcagaggttgcagtaagccaagatcgcgccactgcactccagcctgggtggcagagcaagactctgtctcaaacaaacaaaaaaaaaaaa
s panTro4.chrUn_GL393505          311246 622 +   1195001 TATATGTATATCTA----------TGAATAATTTATGCATAAACAT-----ATATA--TAATGTCAAATCCTAAG-----AAAATGTATACACCTTAAAGAATTATCACAAAACAAATACCTTCACAACTACCACTCAGAATAAC---T-------TTTTTTTTGGCAAAATAGATTACTACTCCTTCATTTGTCTTCAAAGATACCCACTATTTGGAGTTTACTTTTCTTAATGTTTTGATATTTATATACCTACTTtgtggtaggccaataatgcctctgaaaggcatgtccacgtcttaatccatg-gagcctgaccttactt-gaagtagggcatttgcagatgtatttaagacatttgaggctgggcacagtggctcatgtctgtaatcccagcactttgaaaggccaaggcaggtggattcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaagcccatatctaccaaaaatacaaaagttagctgggtggggtggtggtggcacctgtaatcccagctacttgagatcctgaggcagggagaatcacttgaacac---aggaggtggaggttacagtaagccaagatcgtgccattgtactccagcctgggtggcagagcaagactctgtatc---------------aagaa
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5834780 625 +  72422247 tatatGTATTTCTA----------TGAATAATTTATGCATAAACAT-----ATATATGTAATGTCAAATCCTAAG-----AAAATGTATACACCTTAAGGAATTATCACAAAACAAATACCTCCACAACTACCACTCAGAATAACA--T-------TTTTTTTTTGCAAAACAGATTACTACTCCTTAATTTGTCTTCAAAGATACCCACTATTTGGAGTTTACTTTTCTTAATGTTTTGATATTTATATACCCACTCtgtggtaggccaataatgcctctgaaaggcatgtccgtgtcttcatccatg-gagcctgaccttattt-gaagtagggcatttgcagatgtatttaagacatttgaggccaggcacagtggctcatgtctgtaatctcagcactttgaaaggccgaggcaggtggattcacctgaggtcaggatttcaagaccagcctggccaacatggcaaaaagcccgtatctaccaaagatacaaaaattagctgggtgtggtggtggcagcacctgtaatcccagctactcgagagcctgaggcagggaggatcacttgaacac---aggaggcggaggttgcagtaagccaagatcgcgccattgcactccagtctgggtggcagagcaagactctgtctc---------------aagaa
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53554365 627 + 121039945 TATATGTATATCTA----------TGAATAATTTATGCATAAACAT-----ATATATGCAAGGTCAAGTCCTAAG-----AAAATTTATACACCTTAAGGAATTATCACAAAACAAATACCTCCACAACTACCACTCAGAATAATA--TATATATATTTTTTTTTGCAAAATAGATTACTACTCCTTCATTTGTCTTCAAAGATACCCACTATTTGGAGTTTACTTTTCTTAATGTTTTGATATTTATATACCCACTCtgtggtaggccaataatgccttctaaaggcatgtctgtgtcttaatccatg-gagcctgaccttcttt-gaagtagggcatttgcagatgtatttcagaaatttgaggccgggcacagtggctcacgtctgtaatcccagcactttgagaggccgaggcaggtggattcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaaccccgtctctaccaaaaatacaaaagttagccgggcatggtggtg---gcgcctgtaatcccagctactcgagaggctgaggcggggagaatcacttgaactc---aggaggtggaggttgcagtgagccgagatcgcaccattgcactgtagcctgggtgacagagcaaga--ctgtctc---------------aaaaa
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145894456 624 - 170124641 TATATGTATATCTA----------TGAATAATTTATGCACAAACAC-----ATATATGTAAGGTCAAATCCTAAG-----AAAATTTATACACCTTAAGGAATTATCACAAAACAAATACCTCCACAACTACCACTCAGAATAATATTT-------TTTTTTTTTGCAAAATAAATTACTACTCCTTCATTTGTCTTCAAAGATACCCACTATTTGGAGTTTACTTTTCTTAATGTTTTGATATTTGTATACCCACTCtgcggtatgtcaataatgtcttctacaggcatgtccatgtcttaatccatg-gagcctgaccttattt-gaagtagggcatttgcagatgtatttaaggaatttgaggccaggagcagtggctcatgtctgtaaccccagcactttgagaggcagaggcaggtggatccacctgaggtcaggagttcaagaccagcctggtcaacgtggtgcaaatgtcatctctacgaaaaatacaaaagttagatgggcatggaggtg---gcgtctgtaatcccagctacttgagaggctgaggcagggagaaccacttggacac---aggaggtggaggctgcagtgagccaagatcatgccattgcactccagcctgggtgacagagcaagactctgtctc---------------aaaaa
i rheMac3.chr7                 C 0 I 27
s macFas5.chr7                 147884830 624 - 171882078 TATATGTATATCTA----------TGAATAATTTATGCATAAACAC-----ATATATGTAAGGTCAAATCCTAAG-----AAAATTTATACACCTTAAGGAATTATCACAAAACAAATACCTCCACAACTACCACTCAGAATAATATTT-------TTTTTTTTTGCAAAATAAATTACTACTCCTTCATTTGTCTTCAAAGATACCCACTATTTGGAGTTTACTTTTCTTAATGTTTTGATATTTGTATACCCACTCtgtggtatgtcaataatgtcttctacaggcatgtccatgtcttaatccatg-gagcctgaccttattt-gaagtagggcatttgcagatgtatttaaggaatttgaggccaggcgcagtggctcatgtctgtaaccccagcactttgagaggcagaggcaggtggatccacctgaggtcaggagttcaagaccagcctggtcaacgtggtgcaaatgtcatctctacgaaaaatacaaaagttagatgggcatggtggtg---gcgtctgtaatcccagctacttgagaggctgaggcagggagaaccacttggacac---aggaggtggaggctgcagtgagccaagatcatgccattgcactccagcctgggtgacagagcaagactctgtctc---------------aaaaa
i macFas5.chr7                 C 0 I 8
s papAnu2.chr7                 140812160 624 - 162156779 tatatgtatatcta----------tGAATAATTTATGcataaacac-----atatatgtaaGGTCAAATCCTAAG-----AAAATTTATACACCTTAAGGAATTATCACAAAACAAATACCTCCACAACTACCactcagaataatattt-------tttttttttgcaaaatagaTTACTACTCCTTCATTTGTCTTCAAAGATACCCACTATTTGGAGTTTACTTTTCTTAATGTTTTGATATTTATATACCCACTCTGTGGTAGGCCAATAATGTCTTCTACAGGCATGCCCATGTCTTAATCCATG-GAGCCTGACCTTATTT-GAAGTAGGGCATTTGCAGATGTATATAAGAaatttggggccgggcacagtggctcatgtctgtaaccccagcactttgagaggcagaggcaggtggatccacctgaggtcaggagttcaagatcagcctggtcaacgtggtgaaaatgtcatctctaccaaaaacacaaaagttagacgggcatggtggtg---gcgcctataatcccagctacttcagaggctgagtcagggagaACCACTTGGacac---agaaggtggaggctgcagtgagccaagatcatgccactgcactccagcctgggtaacagagcaaggctctgtctc---------------aaaaa
i papAnu2.chr7                 C 0 N 0
s chlSab2.chr26                 36200052 614 +  58131712 TATATGTATATCTA----------TGAATACTTTATGCATAAACAC-----ATATATGTAAGGTCAAATCCTAAG-----AAAATTTATACACCTTAAGGAATTATCACAAAACAAATACCTCCACAACTACCACTCAGAATAATAACT-------TTTTTTTTTGCAAAATAGATTACTACTCCTTCATTTGTCTTCAAAGATACCCACTATTTGGAGTTTATTTTTCTTAATGTTTTGAGATTTATATACCCACTCCgtggtaggccaa----------tacaggcatgtccacgtcttaatccatg-gagcctgaccttattt-gaagtagggcatttgcagatgtatttaagaaatttgaggccgggcacagtggctcatgtctgtaaccccagcactttgagaggcagaggcaggtggatccacctgaggtcaggagttcaagaccagcctggtcaatgtggtgaaaatgtcatctctaccaaaaatacaaaagttagatgggcatggtggtg---gcgcctgtaatcccagctacttgagaggctgaggcagggagaaccacttggacac---aggaggtggaggctgcagtgagccaagatcatgccattgcactccagcctgggtgacagagcaagactctgtctc---------------aaaaa
i chlSab2.chr26                C 0 I 5
s calJac3.chr10                108002711 629 - 132174527 tatatatatatatatatatatatgtaaataATTTATTCATAAAC-------ATATAGGTAGGGCCAAATCCTCAG-----AAAATTTATACGGCTTAAGGAATTATCACAAAACAAGTACCTCCACAACTATTGCTCAGAATAA----T-------TATTTTTTTGAGAAACTGATGACTACTCCATCATTTATCTTAAAAGATACCCACTATTTGGATTTTACTTTTCTTAATGTTTTGATATTTATATACCCACTCtgtggtaggccaataatatcttctaaaggcatgtccatgtcttaatccatg-gaacctgatcttatttaaaagtaggccatttgcagatgtat-taagacatttgaacccgggcgtggtgtctcacacctgtaatcccagcactttgggaggccgaggcaggtggat-cacctgaggtcaggagttcgagaccagcctggtcaacatggtg-aaaccctgtctctacccaagatacaaaaattagctgggagtggtggcag--gtgcctgtaatccaagctactcaagaggtggaggca-ggagaatcagttaaacctgggaggaggtggaggttgcagtgggccaaaatcaaggcattgcaccccagcctaggtgacagagcaagactctgtctc---------------aaaaa
i calJac3.chr10                C 0 I 5
s canFam3.chr30                 26827154 429 -  40214260 TATATGTATATATG----------TGTGTTATTCACACATAAATGTGTATAGTATATATAAAGCCAAGATAAAGGTACATGAAATTTATATAGCTCAAGGAATTATAACAAAATAAATATTTTAGCAACTACCACTCAGG-T---------GAGGAATACTTTCTGCAAAATAGATCACCACCTCTTTCTTTGTTTTCAAAGATA-TCACTATATGGAATATACTTTTCTTA------TGAAATTTACATTTCCACTCtgtggtaagctgataatggtttccaaagatatggctacatc-taatccctgtaaattttactttattttgaaaaagagtatttgtagatgtaattaaggattttgaaa-------------------------------------tgaga-------------ggattatcttgggttta---------------tctggcta-----------------------------------------------------ggca---ctacatgtcattaca------------------------agtgtctttataaaag---agaaggcagaag--gaagt---------------------------------gtgacaatg----------------------------------
i canFam3.chr30                C 0 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=230510.000000
s hg38.chr14_KI270725v1_random    170682 139 +    172810 aaaaaaaaaaagaagaagaaa-gaaaaaagaaatttga-gaggagaacatcctgggttatctgagtgagccctaaatgccatcacaagtgtccttgtaaaaaggagacaaaggga---------------------gcagaaggcaatgggacaatagagac
s panTro4.chrUn_GL393505          311868 136 +   1195001 aaaaaaaaaaagaagaagaaa-gaaaaaagaaatttga----gagatcatcctgagttatccgagtgagccctaaatgccatcacaagtttccttgtaaaaaggagacagaggga---------------------gcagaaggcaataggacaacagaaat
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5835405 123 +  72422247 aaaaaa-----------------aaaaaagaaatttga-gaggagatcatcctgggttatctgagtgagccctaaatgccatcacaagtgtccttataaaaaggagacagaggga---------------------gcagaaggcaatgggacaatagaaat
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53554992 130 + 121039945 aaaaaaaagaaga----------aagaaagaaatttga-gaagagatcattctgcattgtctgagtgagccctaaatgccatcacaagtgtccttgtaaaaaggagacagaggga---------------------gcagaaggcaatgggacgacggaaac
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145895107 118 - 170124641 ----------------------aaagaaagaaatttga-gaggagaccatcctggattatctgagtgagccctaaatgccatcacaagtgtccttgtaaaaagcagacagaggga---------------------gcagaaggcaatgggatgatggaaat
i rheMac3.chr7                 I 27 C 0
s macFas5.chr7                 147885462 140 - 171882078 aaaaaaaaaaaaaagaagaaagaaagaaagaaatttga-gaggagaccatcctggattatctgagtgagccctaaatgccatcacaagtgtccttgtaaaaagcagacagaggga---------------------gcagaaggcaatgggatgatggaaat
i macFas5.chr7                 I 8 C 0
s chlSab2.chr26                 36200671 140 +  58131712 aaaaagaagaagaagaagaaagaaagaaagaaatttga-gaggagaccatcctgggttatctgagtaagccctaaatgccatcacaagtgtccttgtaaaaagcagacagacgga---------------------gcagaaggtaatgggacaatggaaac
i chlSab2.chr26                I 5 C 0
s calJac3.chr10                108003345 137 - 132174527 -------------------------aataataataagatgaggagctcatcctgggttatcctggtaagccctaaatgccatcgcaagtgtccttgtgaaaaggagacagagagagatttgacatacacactgaaggcagaaggcaatgggacgacagaagc
i calJac3.chr10                I 5 C 0
s canFam3.chr30                 26827583  74 -  40214260 ---------------------gaagcagatagatttgaggatgagaaagtttgcggtt-------tggg---------------------------------------aaatgga---------------------gaaagaggccataagccaaggaatac
i canFam3.chr30                C 0 I 11
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=134045.000000
s hg38.chr14_KI270725v1_random    170821 57 +    172810 ggagaagtttgaagatgctgtgatgctggctttgaaaatagaggaa-ggcccacagga
s panTro4.chrUn_GL393505          312004 57 +   1195001 ggagaagtttgaagatgctgtgatgctggctttgaaaatagaggaa-ggcccacagga
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5835528 57 +  72422247 ggagaagcttgaagatgctgtgatgctggctttggaaatagaggaa-ggcccacagga
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53555122 57 + 121039945 ggagaagtttgaagatgctgtgacgcaggctttgaaaatggaggaa-ggcccacagga
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145895225 57 - 170124641 ggagaagtttgaagatgctgtgatgcaggctttgaaaatggaggaa-ggcccacagga
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147885602 57 - 171882078 ggagaagtttgaagatgctgtgatgcaggctttgaaaatggaggaa-ggcccacagga
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36200811 57 +  58131712 ggagatgtttgaagatgctgtgatgcaggctttgaaaatggaggaa-ggcccacagga
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108003482 58 - 132174527 agagaagtttgaagatgctgagatgctggctttaaaaacggaggaaggggccacagga
i calJac3.chr10                C 0 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I
e canFam3.chr30                 26827657 11 -  40214260 I

a score=872957.000000
s hg38.chr14_KI270725v1_random    170878 366 +    172810 tggaagaagccatgaatgaattatcttttggagtctccattgagaatatagcccttctgccatcttgactttaggtcagtgaaacgaaatgttgtacttctgttctctctaactgagagagaataaatttaccttgtttaaaatcactaagtttgtgataagttgtt--acaa---cagccccaggaaacaagtacaCACTCATTTATTTTcttttattgcttaacattatgcattgtgagactgacctatgttgttacatgtagttctaacttgttcattttcattgctgaataatagtcaatAGGCAATTTTAAAAATTCATCTTTTTTT--------AAacaaataatgctgctatgaacatccttgtttgtatct
s panTro4.chrUn_GL393505          312061 365 +   1195001 tggaagaggccatgaatggattattttttggagtctccattgagaatgtagctcttctgccatcttgactttaggtcagtgaaacg-aatgttgtacttctggtctctctaactgagagagaataaatttatcttgtttaaaatcactaagtttgtgataagttgtt--acaa---cagccccaggaaacaaatacaCACTCATTTAtcttcttttattgcttaacattatgcattgtgagattgacctatgttgttacatgtagttctaatttgttcattttcattgctgaataatattcaatatgcaattttaaaaaatcatcttttttt--------gaacaaataatgctgctatgaacatccttgcttgtatct
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5835585 365 +  72422247 tggaagaggccatgaatggattatcttttggagtctccattgagaatatagcccttctgccatcttgactttaggtcagtgaaacg-aatgttgtacttctggtctctctaactgagagagaataaatttatcttgtttaaaatcactaactttgtgataagttgtt--acaa---cagccccaggaaacaaatacaCACTCATTTATTTTcttttattgcttaacattatgcattgtaagattgacctatgttgttacatgtagttctaatttgttcattttcatcactgaataatattcaatATGCAATTTTAAAAATTCATCTTTTTTT--------AAACAAATAATGCTGCTATGAACATCCTTGCTTGTATCT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53555179 365 + 121039945 tggaaaagaccatgaacggattatctttcggagtctccagtgagaacacagcccttctgccaccttgactttaggtcagtgaaacg-aatgttgcacttctggtctctttaactgagagagaataaatttctcttgttttaaatcactaagtttgtggtaagtcatt--acaa---cagccccaggaaacaaatacGCACTC--TTATtttcttttattgcttaacattatgca-tgtgagattgacatatgttgttacatgtagttctaatttgttcattttcattgctgaatagtattcaatAGGCAATTTTTAAAATTCATCCtttttttt-----aaaacagataatgctgctatgaacatccttgcttgtatct
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145895282 370 - 170124641 tggaagaggccatgaacggattatcttttggagtctccagtgagaatacagcccttctgccaccttgactttaagtcagtgaaaca-aatgttgtacttctggtttcttcaactgagagagaataaatt--tcttgttttaaatcactaagtttgtgagaagctgtt--acaa---cagccccaggaaacaaatacaCactcttttattttcttttattgcttaacattatgca-tgtgagattgacgtatgttgctatgtatagttctaatttgttcattctcattgctgaatagtattcaatATGTAATTTTTAAAATTCATCCTTTTTTTTAAAAAAAAACAAATAATGCTGCTATGAACATCCTAGCTTCTATCT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147885659 370 - 171882078 tggaagaggccatgaacggattatcttttggagtctccagtgagaatacagcccttctgccaccttgactttaagtcagtgaaaca-aatgttgtacttctggtttcttcaactgagagagaataaatt--tcttgttttaaatcactaagtttgtgagaagctgtt--acaa---cagccccaggaaacaaatacaCactcttttattttcttttattgcttaacattatgca-tgtgagattgacgtatgttgctatgtatagttctaatttgttcattctcattgctgaatagtattcaatATGTAATTTTTAAAATTCATCCTTTTTTTTAAAAAAAAACAAATAATGCTGCTATGAACATCCTAGCTTCTATCT
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36200868 367 +  58131712 tggaagaggccatg-acggattatcttttggagtctccagtgagaaaacagtccttctgccaccttgactttacgccagtgaaaca-aatgttgtacttctggtttctttaactgagagagaataaatttatcttgttttaaatcactaagtttgtaagaagctgtt--acaa---cagccccaggaaacaaatacaCactcttttattttcttttattgcttaacattatgca-tgtgagattgatgtatgttgctacgtgtagttctaatttgttcattttcattgctgaatagtattcaatATACAATTTTTAAAATTCATCCTTTTTTTT----AAAAacaaataatgctgctatgaacatccttgcttctatct
i chlSab2.chr26                C 0 C 0
s calJac3.chr10                108003540 368 - 132174527 tggaagcagccataaacagattatcttttggagtctccagtgagaatacagcccttctgccactttgactttagggcagtgaaatg-aatgttttacttctggcctccttaactgagagagaataaatttctgttgttttaaataactacgtttgtgataatttgttagacaaacttagcCCCAAGAAACAAATATGCACGCTTTAATTTTAtttt-ttgcttaacattatgca-tgtgagattgacctgtgttgctacatgtagttctaatttgttcatttttattgctgaaaagcattcaatatgtaATTTT-AAAAGTAATCCTACTTTT-------AAacaaataatgctgctatgaacatccttgtatatatct
i calJac3.chr10                C 0 N 0
s canFam3.chr30                 26827668 319 -  40214260 tagaagagtcaattaacagattatctttaagaatctccagagggagtgctgctc---------agtgaaactgggctagggaaact-gacgttggacttctagcttcttgaactatgagagaaaagatttctgttgtttcaagtcac------tgtggtaatttgtt--agaa---tagccacaggaaactaatgcaTATTGTtt------------ttgtttaacattatgca-tgtgagattgatcaatgttggtacatgtagttctaatttattaattttcattgctgtgtagtGGTT---------TTCTATTCATTCATTCTTTCTTT-------TTACAAATAATGTTGCTATGAACA----------TGTCT
i canFam3.chr30                I 11 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=498857.000000
s hg38.chr14_KI270725v1_random    171244 249 +    172810 tgtggtataaatatgtaagtgggtagctgcatccatttactttt-tctccaacagtctatgagaatttcccttgttctctatcttcatttgtaatcggtattgttagtc-ttttaatgttagacaaactagtatgtgtagaatggtatgtcattacagttttaatttaaatttctctaacaaataatgagC-------CATTTTTATcaggactgagcctagggtgaagcaagagaggcatctagggtatacaattta
s panTro4.chrUn_GL393505          312426 248 +   1195001 tgtggtataaatatgtaagtgggtagctgcatccatttactttt-tctccaacagtctaggagaagttcccttgttctgtatcttcatttgtaatcattattgttagtc--tttaatgttagacaaactagtatgtgtagaatggcatgtcattacagttttaatttaaatttctctaacaaataatgagC-------CATTTTCATcaggattgagcctagggtgaagcaagagaggcatctaaggtacacaattta
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5835950 249 +  72422247 TGTAGTATAAATATGTAAGTGGgtagctgcatccatttactttt-tctccaatagtctatgagaatttcctttgttctgtatcttcatttgtaatcattattgttagtc-ttttaatgttagacaaactagtatgtgtagaattgtatgtcattacagttttaatttaaatttctctaacaaataatgaGC-------CATTTTCATcaggactgagcctagggtgaagcaagacaggcatcaagggtacacaattta
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53555544 244 + 121039945 tgtggtataaatatgtaagtgggtagctgcatccatttactttt-tctccagcagtctatgagaatttcccttgttctgtatcttcatttgtaattgttattgttagtc-ttttaatgttagacaaactagtatgtgtagaatggtatgtcattaaagttttaatttaaatttctctaacaaataatgagC-------TGTTTTCATCAGAACTGAGACTAGCGTGAAGCAAGAGAGGCATCTAGGGTACACA-----
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145895652 249 - 170124641 TGTGGTATAAATACGTAAGTGGgtagctgcacccatttactttt-tctcaagcagtctatgaaaatttcacttgttctgtatcttcatttgtaattgttattgttagtg-ttttaacgttagacaaactagtacatgtagaatggtatgtcattacagttttaatttaaatttctctaacaaataatgaGT-------CGTTTTCATcaggactgagaccagtgtgaagcaagagaggcatctagggtacacaattta
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147886029 249 - 171882078 TGTGGTATAAATACGTAAGTGGgtagctgcacccatttactttt-tctcaagcagtctatgagaatttcccttgttctgtatcttcatttgtaattgttattgttagtg-ttttaacgttagacaaactagtacgtgtagaatggtatgtcattacagttttaatttaaatttctctaacaaataatgagT-------CGTTTTCATcaggactgagaccagtgtgaagcaagagaggcatctagggtacacaattta
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36201235 245 +  58131712 tgtggtataaatatgtaagcgggtagctgcacccatttactttt-tct----cagtctatgagaatttcccttgttctgtatcttcatttgtaattgttattgttagtc-ttttaatattagacaaactagtacgtgtagaatggtatgtcattacagttttaatttaaatttctctaacaaataatgagc-------cgttttCATcaggactgagaccagcgtgaagcaagagaggcatctagggtacacaattta
i chlSab2.chr26                C 0 C 0
s canFam3.chr30                 26827987 254 -  40214260 TACAAAGTAAATGTGTAAACGTgtagctttacccatttatttttctctccagcaatgtaggagaattctcaatgttctatttcttcatcaataattgttactgttagtatttttaatgttagagaatctggtgtgtgtacagtggtatcactttgtag-tttaatttgaatttccctaatgaagaatggtcattttttcatatttattTGATATG---TCAGAATGAGTCATGACAGGCACCTAGGGTGCACAATTTA
i canFam3.chr30                C 0 N 0
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=462455.000000
s hg38.chr14_KI270725v1_random    171493 272 +    172810 aggacgtgtttaatcccTTTCCTTTCTGTCCTTGTTTGTGATGAATTATTTCTACTTTATCAGACAAAAAGTGTAataggtatacaattgatttttgctttttgtgcatttgttataagtccagtcaccttaccaaactggcttttatttctaattgtttgtagataatttttgacatttgtacatagccatgccatctccaaaatagcatttacctttccttttcaatatttacaaatttaatttattttaattgccttatcacactagct
s panTro4.chrUn_GL393505          312674 272 +   1195001 aggatgcgtttattcccTTTCCTTTCTGTCCTTGTTTGTGATGAATTATTTCTACTTTATCAAACAAAAAGTGTAataggtatacaattgatttttgctttttgtgcatttgttataaatccagtcaccttaccaaactggcttttatttctaactgtttgtagataatttttgacatttgtacatagccatgacatctccaaaatagcatttacctttccttttcaatatttgcaaatttaacttcttttatttgccttatcacactagct
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5836199 272 +  72422247 aggatgtatttattcccTTTCCTTTCTGTCCTTGTTTGTGATGAATTATTTCTACTTTATCAAATAAAAAGTGTAataggtatacaattgatttttgctttttgtgcatttgttataaatccagtcaccttaccaaactggcatttatttctaattgtttgtagataatttttgacattggtacatagccatgccatctccaaaatagcatttacctttccttttcaatacttacaaatttaacttcttttaattaccttatcacactagct
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53555788 265 + 121039945 ------CATTTATTCACTTTCCTTTCTGTCCTTGATTGTGATGAATTATTTCTACTTTATCAAACAAAAAGTGTAataggtatacaattgctttttgctttttgtgcatttgttataaatccagtcactttactaaactggcttttatttctaattttttgtggataatttttgatatttgtgcatagccatgccatctgcaaaatagcattta-ctttcctttgcaatctttacaaatttaacttcttttaattgccttatcacactagct
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145895901 266 - 170124641 aggatgtgtttattcccTTTCCTTTCTGTCCTTGTTTGTG--GAATTATTTCTACTTTATCAAACAAAAAGTGTAataggtatacaattgatttttgctttttgtgcatttgttatcaatccagttactttactaaactggcttttatttc----tgtttgtaaataatttttgacatttgtacatagccatgccatctgcaaaataacatttacctttcctttgcaatatttataaatttaacttcttttaattgccttatcacactagct
i rheMac3.chr7                 C 0 I 690
s macFas5.chr7                 147886278 266 - 171882078 aggatgtgtttattcccTTTCCTTTCTGTCCTTGTTTGTG--GAATTATTTCTACTTTATCAAACAAAAAGTGTAataggtatacaattgatttttgctttttgtgcatttgttatcaatccagttactttactaaactggcttttatttc----tgtttgtaaataatttttgacatttgtacatagccatgccatctgcaaaataacatttacctttcctttgcaatatttataaatttaacttcttttaattgccttatcacactagct
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36201480 268 +  58131712 aggatgtgtttattcccTTTCTCTTCTGTCCTTGTTTGTGATGAATTATTTCTACTTTATCAAACAAAAAGTTTAataggtatacaattgattttcgctttttgtgcatttgttatcaatccagttactttactaaactggcttttatttc----tgtttgtaaataatttttgacatttgtacatagccatgccatctgcaaaataacatttacctttcctttgcaatatttataaatttagcttcttttaattgccttatcacactagct
i chlSab2.chr26                C 0 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=10.000000
s hg38.chr14_KI270725v1_random    171765 3 +    172810 -ggg
s panTro4.chrUn_GL393505          312946 3 +   1195001 -ggg
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5836471 3 +  72422247 -ggg
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53556053 3 + 121039945 -ggg
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147886544 3 - 171882078 tgg-
i macFas5.chr7                 C 0 I 678
s chlSab2.chr26                 36201748 2 +  58131712 -gg-
i chlSab2.chr26                C 0 I 1
e nasLar1.chr7                 130426267 2659 - 153844193 I
e rheMac3.chr7                 145896167 690 - 170124641 I

a score=5874.000000
s hg38.chr14_KI270725v1_random    171768 7 +    172810 gcCACTA
s panTro4.chrUn_GL393505          312949 7 +   1195001 gcCACTA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5836474 7 +  72422247 GACACTA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53556056 7 + 121039945 gccacta
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36201751 7 +  58131712 gccacta
i chlSab2.chr26                I 1 I 2
e nasLar1.chr7                 130426267 2659 - 153844193 I
e rheMac3.chr7                 145896167 690 - 170124641 I
e macFas5.chr7                 147886547 678 - 171882078 I

a score=-69.000000
s hg38.chr14_KI270725v1_random    171775 1 +    172810 T
s panTro4.chrUn_GL393505          312956 1 +   1195001 T
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5836481 1 +  72422247 T
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53556063 1 + 121039945 g
i nomLeu3.chr6                 C 0 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I
e rheMac3.chr7                 145896167 690 - 170124641 I
e chlSab2.chr26                 36201758 2 +  58131712 I
e macFas5.chr7                 147886547 678 - 171882078 I

a score=95346.000000
s hg38.chr14_KI270725v1_random    171776 111 +    172810 AAAtcttttatacttgttttgatgtctatagaaactgtagtgatgtcctctc-tttattaatttctcacactggtaatttctggtctctctttCTGGCTCACTGTTTATCTT
s panTro4.chrUn_GL393505          312957 112 +   1195001 AAAtcttttatacttgttttgatgtctatagaaactgtaatgatgtcctctcttttattaatttctcacactggtaatttctggtctctctttctgtctcACTGTTTATCTT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5836482 112 +  72422247 AAATCTTTTATACTTGAtttgatgtctatagaaactgtagtgatgtcctctcttttattaatttctcacactggtaatttctggtctctctttctgtctcACTGTTTATCTT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53556064 112 + 121039945 aaatcttttatacttcttttgatgtctatagaaactgtagtgatgtcctctcctttgttaatttctcacactggtcatttctggtctctctttctgtctcactgtttatctt
i nomLeu3.chr6                 C 0 C 0
s chlSab2.chr26                 36201760 112 +  58131712 GAAtcttttatacttcatttgatgtctatagaaactgtagtgacgtcctctcttttactaatttctcacactagtaatttctggtctctctttctgtctcACTGTTTATCTT
i chlSab2.chr26                I 2 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I
e rheMac3.chr7                 145896167 690 - 170124641 I
e macFas5.chr7                 147886547 678 - 171882078 I

a score=9960.000000
s hg38.chr14_KI270725v1_random    171887 7 +    172810 TCTGTCA
s panTro4.chrUn_GL393505          313069 7 +   1195001 TCTGTCA
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5836594 7 +  72422247 TCTGTCA
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53556176 7 + 121039945 tctGTCA
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr7                 147887225 7 - 171882078 TCTGTCA
i macFas5.chr7                 I 678 I 2
s chlSab2.chr26                 36201872 7 +  58131712 TCTGTCA
i chlSab2.chr26                C 0 I 2
e nasLar1.chr7                 130426267 2659 - 153844193 I
e rheMac3.chr7                 145896167 690 - 170124641 I

a score=8022.000000
s hg38.chr14_KI270725v1_random    171894 4 +    172810 CTCT
s panTro4.chrUn_GL393505          313076 4 +   1195001 CTCT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5836601 4 +  72422247 CTCT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53556183 4 + 121039945 CTCT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145896857 4 - 170124641 CTCT
i rheMac3.chr7                 I 690 C 0
s macFas5.chr7                 147887234 4 - 171882078 CTCT
i macFas5.chr7                 I 2 C 0
s chlSab2.chr26                 36201881 4 +  58131712 CTCT
i chlSab2.chr26                I 2 C 0
e nasLar1.chr7                 130426267 2659 - 153844193 I

a score=4431.000000
s hg38.chr14_KI270725v1_random    171898 2 +    172810 TT
s panTro4.chrUn_GL393505          313080 2 +   1195001 CT
i panTro4.chrUn_GL393505       C 0 C 0
s ponAbe2.chrUn                  5836605 2 +  72422247 CT
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53556187 2 + 121039945 CT
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145896861 2 - 170124641 CT
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147887238 2 - 171882078 CT
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36201885 2 +  58131712 CT
i chlSab2.chr26                C 0 C 0
s nasLar1.chr7                 130428926 2 - 153844193 CT
i nasLar1.chr7                 I 2659 N 0

a score=1459934.000000
s hg38.chr14_KI270725v1_random    171900 906 +    172810 TCCCCTCTTTCCCCgtgtgtatgtatgtatgt--------gtgagtgtgtgtctgtatAAAAGAATTTAAATATAcggatagtccttgacttaatgatggtttgacttacaatttttcaactttacaatactgcaaaaCAATCACAATTTCAACataatgtaccatattcaatacactacatgagagattcaacactttctgataaagtaggctttctgttagataattttgcccaac-tgtaagctaatgttagtgcactgagcatgtttaaggtaggctaggctaagcgatgatgtttggcaggttgggtatattaaatgcattttctacttatgatattttcaa-ttatattgggcttaccaggatgtaaccctatcataagttgaggaacaactgTACTACAATTATACAATTATAAAGAGATTCATTATTTTTTTCTAGGCAAAACTTTTTTTTGTTGTTGATTTTTCTCTTATATGTCTGCtgtatttgtcagttttcaaattactgtaaatatactacctgagactggataatttataaataaaaatgatttacttgattcacagttctgcatggctggggaggcctcaggaaacatacaaccatgacagaaggtaaaagagaagcaaggcacatcttacatggcagcaggagagagagcaggaaaaactgccaCtt--tttttttttttttttttttttgagacagagtcttgctgtgtagcccagactggagtgcagtggtgtgatctcagctcacttcaacctccgcctgccaggttcaagtgattcccctgtctcagcctcatgagtagttgagattacagtcatgtgccactatacccagctaatttttttgtatttttagtagagatggagttttgccatgttggccagctggttttgaattcct
s panTro4.chrUn_GL393505          313082 890 +   1195001 TCCCCTCTTTCTCCAtgtgtatgtatgtgtgt------------gtgtgtgtctgtATAAAAGAATTTAAATATAcagatagtccttgacttaatgatggtttgacttacaattttttgactttacaatactgcaaaacaatcacaatttcaacataatgtaccatattcaatacattacatgagacattcaatactttctgataaagtaggctttctgttagataattttgcccaac-tgtaggctaatgttagtgcactgagcatgtttaaggtaggctaggctaagcgatgatgtttggcaggttgggtatattaaatacattttctacttatgatattttcaa-ttatattgggcttatcaggatgtaaccctatcacaagttgaggaac-tctgTACTATAATTATGCAATTATAAAGAGATTCATTATTTTTTTCCAGGCAAAAC-TTTTTTTATTGTTGATTtttctcttatatgtctgctgtattagtcagttttcatattactataaagatactacgtgagactgggtaatttataaataaaaatgatttacttgattcacagttctgcatggctggggaggcctcaggaaacatacaatcatgacaaaaggtaaaggagaagcaaggcacaacttacatggaagcaggagagagagtaggaaaaactgacaa------------tttttttttttttgagacagagtcttgctgtgtagcccatactggagtgcagtggtgtgatcttgggtcactgcaacctccacctcccaggttcaagtgattcccctgtctcagcctcctgagtagctgagattacaggcgtctgccactatacccagctaaattttttgtctttttagtagagatggggttttgccatgttggccagctggttttgaactcct
i panTro4.chrUn_GL393505       C 0 N 0
s ponAbe2.chrUn                  5836607 901 +  72422247 TCCCCTCTTTCTCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtATAAAAGAATTTAAATATAcagatagtccttgacttaatgatggtttcacttacaatttttcgactttacaacactgcaaaacaatcacaattccaacataatgtaccatattcaatacattgcatgagagattcaacactttctgataaagcaggctttctgttagataattttgaccaac-tttaggctaatgttagtgcactgagcttgtttaaggtaggctaggctaagcgatgatgtttggcaggttgggtatattaaatgcattttctacttatgatattttcaa-ttatattgggcttatcaggatgtaaccctatcataagttgaggaacatctgTACTATAATTATGCAATTATAAAGAGATTCATTATTTTTTTCCAGGCAAAAG-TTTTTTTATTATTGATTTTTCTCTTATACATCTGAtgtatt----agttttcaaattgctataaagatactacctgagactgggtaatttataaataaaaatgatttacttgattcacagttctgcatggctggggaggcctcaggaaacatacaatcatgacagaaggtaaaggagaagcaaggcacatcttacatggtagcaggagagagagcaagaaaaactgccac----------tttttttttttttttgaggcagagtcttgctgtgtagcccagactggagtgcagtggtgtgatcttggctcactgcaaccttcgtctcccaggttcaagtgattcctctgtctcagtctcctgaatagctgagattacaggcatgtgccactatacccagctaatttttttgtatttttagtagagatggggttttgccatgttaaccagctggttttgaactcct
i ponAbe2.chrUn                C 0 C 0
s nomLeu3.chr6                  53556189 895 + 121039945 TCCCCTCTTTCTCCgtgtgtatgtatgtgtgt--------------gtgtgtctgtATAAAAGAACTTAAATATAcagatagtccttgacttaatgatggtttgatttacaatttttcaactttacaatgctgcaaaaCAATCACAATTTCAAAataatgtatcatattcaatacattacataagagattcaacactttcttataaaacaggctttctgttagataattttgcccaac-tgtaggctaatgttagtgctctgaacatgtttaaggtaggctgggctaagctatgatgtttggcaggttaggcatattaaatgcatgttctacttatgatatcttcaatttatattgggcttatcaggatgtaaccctatcataagttgaggaacatctgTACTATAATTAGGCAATTATAAAGATATTCATTATTTTTTTCCAGGAAAAAC-TTTTTTTGTTGTTGATTTTTCTCTTATATGTCTGCtgtgttagtcagttttcaaattactataaagatactacctgagactgggtaatttataaatagaaatgatttacttgattcacagttctgcgtggctggggaggccccaggaaacacacaatcatgacagaaggtaaaggagaagcaaggcacatcttacatggcagcaggagagagagcaggaaaaactgccat----tttttttttttttttttttttgagac--agtcttgctgtgtagcccagactggagtgcagtggtgtgatctcagctcactgcaacccccgcctcccagattcaagtgattcccctgttacagcgtcctgagtagctgagattacaggtgtttgccactatacccagctaa-ttttttgtatttttagtagagatggggttttgccatgttgcccagctggttttgaactcct
i nomLeu3.chr6                 C 0 C 0
s rheMac3.chr7                 145896863 895 - 170124641 TCCCTTCTTTCTCCGTGTGTATGTATATGTGT--------------GTGTGTCTATATAAAAGAATTTAAATATATagatagtccttgacctaatgatggtttgacttacaa-tttttgactttacaatgctgcaaaaCAATCACAATTTCAACataatgtaccatattcaatacattacatgagagattcaactctttcttataaaataggctttccgttagataattttgcccaacatgtagggtaatgttagtgctctgagcatgtttaaggtagacgaggctaagctatgatgtttggcaggttaggtgtattaaatgcattttctacttatgatatttccagtttatattgagcttatcaggatgtaatcctatcataagctgaggaaaatctgTACTATAATCAGGCAATTATAAAGAGATTCATTATTTTATTCCAGGAAAAAC-TATTTTT-CTATTTATTTTTCAATTATGTGTCAGCtgtattagtcagttttcaaattactgttaagatactacctgagactgggtaatttataaataaaaatgatttatttggttcacagttctacatggctgaggaggccttaggaagcatacaatcatgacagaagataaaggacctgc-aggcacatcttacatggcagcaggagagagagcaggaaaccctgccactttctttctttc-ttttttttttttgaaaa--agtcttcctgtgtagtccaagctggagtgcagtggtgtgatctcggctcactgcaaccccttcctcccgagttcaagtgattctcctgtctcagtctcctgagtagctgagattacaggtgtgtgccactacacccagctca--tttttgtatttttagtggagatggggtttcaccatgttggccagctggttttgaactcgt
i rheMac3.chr7                 C 0 C 0
s macFas5.chr7                 147887240 896 - 171882078 TCCCTTCTTTCTCCgtgtgtatgtatatgtgt--------------gtgtgtCTATATAAAAGAATTTAAATATATagatagtccttgacctaatgatggtttgacttacaa-tttttgactttacaatgctgcaaaacaatcacaatttcaacataatgtaccatattcaatacattacatgagagattcaactctttcttataaaataggctttccgttagataattttgcccaacatgtagggtaatgttagtgctctgagcatgtttaaggtagacgaggctaagctatgatgtttggcaggttaggtgtattaaatgcattttctacttatgatatttccagtttatattgagcttatcaggatgtaatcctatcataagctgaggaaaatctgTACTATAATCAGGCAATTATAAAGAGATTCATTATTTTATTCCAGGAAAAAC-TATTTTT-CTATTTATTTTTCAATTATGTGTCAGCtgtattagtcagttttcaaattactgttaagatactacctgagactgggtaatttataaataaaaatgatttatttggttcacagttctacatggctgaggaggccttaggaagcatacaatcatgacagaagataaaggagaagc-aggcacatcttacatggcagcaggagagagagcaggaaacactgccactttctttctttctttttttttttttgaaac--agtcttcctgtgtagtccaagctggagtgcagtggtgtgatctcggctcactgcaacccctgcctcccgagttcaagtgattctcctgtctcagtctcctgagtagctgagattacaggtgtgtgccactacacccagctaa--tttttgtatttttagtggagatggggtttcaccatgttggccagctggttttgaactcgt
i macFas5.chr7                 C 0 C 0
s chlSab2.chr26                 36201887 894 +  58131712 TCCCCTCTTTCTCCATGTGTATGTATATGTGT--------------GTGTGTCTATATAAAAGAATTTAAATATATagatagtccttgacctaatgatggtttgacttacaattttttgactttacaatgctgcaaagcaatcacagtttcaacataatgtaccatattccatacattacatgacagattcaacactttcttataaaataggctttccgttagataattttgcccaacatgtagggtaatgttagtgctctgagcatgtttaaggtagactaggctaagctgtgatgtttggcaggttaggtgtattaaatgtattttctacttatgatatttccaatgtatattgagcttatcaggatgtaatcctatcataagctgaggaacatctgTACTATAATTAGGCAATTATAAAGAGATTCATTATTTTATTCCAGGAAAAAC-TATTTTT-CTATTTATTTTTCAATTATATGTCTGCTTtatt----agttttcatattactgttaagatactacctgagactgggtaatttataaatataaatgatttatttggttcatagttctacatggcttaggaggccttaggaaacatacaatcatgacagaaggtaaaggagaagcaaggcacatcttacatggcagcaggagaaagagcaggaaacactgacactttcttttcttttttttttttttttaagac--agtcttcctgtgtagtccaagctggagtgcagtggcgtgatctcggctcactgcaacccccgcctcccgagttcaagtgattctcctgtctcagtctcctgagtagctgagattacaggtgtgtgccactacacccagctaa--tttttgtatttttagtggagatgggtttttgccatgttggccagctggttttgaactcgt
i chlSab2.chr26                C 0 C 0

a score=5730.000000
s hg38.chr14_KI270725v1_random    172806 4 +    172810 gatc
s ponAbe2.chrUn                  5837508 4 +  72422247 gatc
i ponAbe2.chrUn                C 0 N 0
s nomLeu3.chr6                  53557084 4 + 121039945 gatc
i nomLeu3.chr6                 C 0 N 0
s rheMac3.chr7                 145897758 4 - 170124641 gatc
i rheMac3.chr7                 C 0 N 0
s macFas5.chr7                 147888136 4 - 171882078 gatc
i macFas5.chr7                 C 0 N 0
s chlSab2.chr26                 36202781 4 +  58131712 gatc
i chlSab2.chr26                C 0 N 0

