##maf version=1 scoring=roast.v3.3
a score=77128.000000
s hg38.chr15_KI270850v1_alt        0 863 +   430880 gaattccagaagcagaagagaaagaaacaggagaaatatttgaaacaataatgactgagaatttctctcaatgtgagacaccaaaccacagatccaggaagctcagaaaacatcaagcaggataaatgcccacagaaaaactgcatctagccacctaagttacaaactatgaaaaaaaaaaaatcaaaagatgaagagaaaattctggaggaacctagagggaaaagaaaacacaccttacctacagagaagtcaagataagaattacatccaacttctcagaaattgtataagcaagag---actggagtgaaatatttaaagtgttgagagagggggaaaaaaaccccaccaccaacctagaattctatattctgtgaaattactcttcataagtgaaggagaaataaacactttctcatacaaaaattgagggaattagttgccagtaaacatgccttgaaagaaatgttaaagaaaagttccttgggaaaaaggaaaatgatacatgtcagtaacttggatgtatatcaagaaaggaagagcactggaataagttaatataaaatgaaaattttattcttcttattcttaatttatctaatagatcaattcagatcaaactgatcaatagatcaaacatcatttgttcaaaataataattagcaataatatatttgattatgtatatattttttgtatataaatgatgtgtatgtttgtatataagtgaaatgaatgataatgatacaagggacaggagggaagaattaggacaattttgttattataagatactcacactacctgtgaagcagtagagtgttatttaaaagtgcacttaaactagttgtaaacgtattgca
s panTro4.chr15             79955093 857 + 99548318 gaattccagaagcagaagagaaagaaacaggagaaatatttgaaacaataatgactgagaatttctctcaatgtgagacaccaaaccacagatccaggaagctcagaaaacatcaagcaggataaatgcccacagaaaaactgcatctagccacctaagttacaaactatgaaaaaaaaa---tcaaaagatgaagagaaaattctggaggaacccagagggaaaaaaaaacacaccttacctacagagaagtcaagataagaattacatccaacttctcagaaatcgtataagcaagaggagactggagtgaaatatttaaagtgttgagagagggggaaaaaaaccccaccaccaacctagaattctatattctgtgaaattactcttcataagtgaaggagaagtaaacactttctcatacaaaaattgagggaattagttgccagtaaacatgccttgaaagaaatgttaaagaaaatttccttgggaagaaggaaaatgatacatgtcagtaacttggatgtatatcaagaaaggaagagcactggaataagttaatataaaatgaaaattttattcttcttattcttaatttatctaatagatcaattcagatcaaactgatcaatagatcaaacatcatttgttcaaaataataattagcaataatatatttgattatgtatatattttttgtatataaatgatgtgtatgtttgtatataagtgaaatgaatgataatgatacaagggacaggagggaagaattaggacaattttgttattataagatac----actacctgtgaagcagtag--tgttatttaaaagtgcacttcaactagttgtaaacgtattgca
i panTro4.chr15             N 0 C 0

a score=314856.000000
s hg38.chr15_KI270850v1_alt      863 1209 +   430880 aatcctagggaaaacagtacaaaaagaagtataactgatggatatgctaagaagggaaagaaaatggaatcatgaaatgctcaattaaagccacaaaagatggaaacagagtggaagtcaaaaatagaaacaaaaacaaggacaacaaatagaacacagtaacaaatatggtagatattaatcttactatattgatataataatcactttgaatgtcaatggtcaatcaccaattaaaagagagaaattgtcagagtggatcaaaaacaaaacccaactatacactatatgttgcctacaataaactcactttaaatataaagatacatatagattaaaagtaaataaatagaggaaaaacataccatgctaacactaatcaaaagaaagcaggaatagctatatgaatttcagacagagcagcttcaaagcaaggaaatttagcaaggataaagaagggcattacagaatgacaatgggaatccattctccaagaagacataacaatcattaatgtgtatgtgctaacaacagagaatcaaacaccctgaggtaaaaactgatagaagtgtaggaaacatagatggatccactatcatagcaggagacttcaacacgtctctatcagaaatggacagattcagcaggcagaacatcaacaaggactt-----aacaaggccattaattaactggatataattgatgtctatagacaacttcatcccacaatagcagattacaattcttctcaagcttacatggaacattcatcaagatagaccacattctgggccataaaacacactttaacacatttaaaatcatagaaatcatacaatgtctgcttttatgccacagtggaattaaattataaatcaataacagaaaggtaacaggaaaatcccaaaatatgtggaaattaaacaactttctttctttcttt----------------------------------ccttccttccttcatcccttctttccttccttccc------cttacc------------------cttccttccttccttccttcttcca----tccttccttctctctctctctttctctctctctttctttctctctctttcttgtgggatacagtaaaaacagtgctatggggaaatgtaaggcattgaatacatatattagaaaagaagacagatcttaaatcaggattctaagtttacacctgaagaaaatagaaaagaagggcaaattaaatccaaagtaggtcaggtgct
s panTro4.chr15             79955950 1208 + 99548318 aatcctagggaaaacagtacaaaaagaagtataactgatggatatgctaagaagggaaagaaaatggaatcatgaaatgctcaa----agccacaaaagatggaaacagagtggaagtcaaaaatagaaacaaaaacaaggacaacaaatagaacacagtaacaaatatggtagatattaatcttactatattgatataataatcactttgaatgtcaatggtcaatcaccaattaaaagagagaaattgtcagagtggatcaaaaacaaaacccaactatacactatatgttgcctacaataaactcagtttaaatataaagatacatatagattaaaagtaaataaatagaggaaaaacataccatgctaacactaatcaaaagaaagcaggaatagctatatgaatttcagacagagcagcttcaaagcaaggaaatttagcaaggataaagaagggcattatagaatgacaatgggaatccattctccaagaagacataacaatcattaatgtgtatgtgctaacaacagagaatcaaacaccctgaagtaaaaactgatagaagtgtaggaaacatagatggatccactatcatagcaggagacttcaacacgtctctatcagaaatggacagattcagcaggcagaacatcaacaaggactt-----aacaaggccattaattaactggatataattgatgtctatagacaacttcatcccacaatagcagattacaattcttctcaagcttacatggaacattcatcaagatagaccacattctgggccataaaacacactttaacacatttaaaatcatagaaatcatacaatgtctgcttttatgccacagtggaattaaattataaatcaataacagaaaggtaacaggaaaatcccaaaatatgtggaaattaaacaactttctttctttcttt------------------ttctttctttc--tttccttccttccttcatcccttctttccttccttccc-ttccccttccc------------------cttccttccttccttccttcttcca----tccttccttctctctctctctttctctctct----------------ttcttgtgggatacagtaaaaacagtgctatggggaaatgtaaggcattgaatacatatattagaaaagaagacagatcttaaatcaggattctaagtttacacctgaagaaaatagaaaagaagggcaaattaaatccaaagtaggtcaggtgct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             79901598 1267 + 99152023 aatcctagggaaaacagtacaaaaagaagtataactgatggatatgctaagaagggaaagaaaaatgaatcatgaaatgctcaattaaagccacaaaagatggaaacagagtggaagtcaaaaatagaaacaaaaacaaggacaacaaatagaacagagtaacaaatatggtagatattaatcttactatattgatataataatcactttgaaagtcaatggtcaatcaccaattaaaagagagaaattgtcagagtggatcaaaaacaaaacccaactatatactatatgttgcttacaataaactcactttaaatataaagatacatatagattaaaagtaaataaatagaggaaaaacataccatgctaacactaatcaaaagaaagcaggaatagctatatgaatttcagacaaagcagcttcaaagcaaggaaatttagcaaggataaagaagggcattacagaatgacaa-ggcaatccattctccaagaagacataacaatcattaatgtgtatgtgctaacaacagagaatcaaataccctgaggtaaaaactgatagaagtgtaggaaacatagatgaatccactatcatagcaggagacttcaacacgtctctatcagaaatggacagattcagcaggcagaacatcaacaaggacttaactcaacaaggccattaattaactggatataattgatatctatagacaacttcatcccacaatagcagattatgattcttctcaagctcacatggaacattcgtcaagatagaccacattctgggccataaaacacactttaacacatttaaaagaatagaaatcatacaatgtctgcttttacaccgcagtggaattaaattataaatcaataacagaaaggtaacaggaaaatcccaaaatatgtggaaattaaacaactttcttcctttctttctttccttccttctttctttctttctttctttttccttccttccttcatcccttctttccttccttccccttccccttgcctccttccttcctttctttcttccttccttccttccttcttccatccttccttccttctctctctctctttctctctctctttctttctctctctttcttGTGGg--------aaaacagtgctatggggaaatgtaaggcattgaatacatatattagaaaagaagacagatcttaaatcaggattctaagtttacacctgaagaaaatagaaaagaagggcaaattaaatccaaagtaggtcaggtgct
i ponAbe2.chr15             N 0 C 0

a score=874238.000000
s hg38.chr15_KI270850v1_alt      2072 419 +    430880 gtggctcacacttgtaatcccagcactttgggaggccgaggtaggtggatca-------------------cgtgaggtcaggagttcaagagaagcctggccaacatggggaaacccagtctctactaaaaatac-aaaaattagttgggcgtggtggctcgcacctgtaatcccagctacttgggaggctgaggc---agaattgcttgaacccagcagccagaggttgcagtgagccaagatcgcgccattgcattccagcctgggtgacaagaatgaaactctctctcaaaacaaaaacaaaaacaaacaaacaaacaaaaacaaaaacaaGTCTTGGAGTTGTAGCTTCCGTGAACTGTGATCCTTGAGAAAGTTAGGAAATCCCCCACTGGGAGTGAACCTAGGAAGTAGTTCTTCCCTATCTCTGTTATTTTCAT
s panTro4.chr15              79957158 419 +  99548318 gtggctcacacttgtaatcccagcactttgtgaggccgaggtaggtggatca-------------------cgtgaggtcaggagttcaagagaagcctggccaacatggggaaacccagtctctactaaaaatac-aaaaattagttgggcgtagtggctcacacctgtaatcccagctacttgggaggctgaggc---agaattgcttgaacccagcagccagaggttgcagtgagccaagatcgcgccattgcattccagcctgggtgacaagaatgaaactctctctcaaaacaaaaacaaaaacaaacaaacaaacaaaaacaaaaacaaGTCTTGGAGTTGTAGCTTCCGTGAACTGTGATCCTTGAGAAAGTTAGGAAATCCCCCACTGGGAGTGAACCTAGGAAGTAGTTCTTCCCTATCTCTGTTATTTTCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79902865 414 +  99152023 gtggctcatgcttgtaatcccagcactttgggaggccgaggtaggtggatca-------------------cacgaggtcaggagttcaagagaagcctagccaacat-gggaaacccagtctctactaaaaatac-aaaaattagttgggtgtggtggcttgcacctgtaatcccagctacttgggaggctgaggc---agaattgcttgaacccagcagccggaggttgcagtgagccaagatcgtgccattgcattccagcctgggtgacaagaatgaaactctctctcaaaacaaaaacaa----aaacaaacaaacaaaaacaaaaacaaGTCTTGGAGTTGTAGCTTCTGAAAACTGTGATCCTTGAGAAAGTTAGGAAATCCCCCACTGGGAGTGAACCTGGGAAGTAGTTCTTCCCTATCTCTGTTATTTTCAT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22685263 437 - 121039945 gtggcttatgcctgaaatcccagtactttgggaggccgaggcgggtggatcaggatcgggtggatcaaactcctgaggtcaggagtttgaaaccagcctggccaacatggcaaaaccccatctctactaaaaatac-aaaaattatctgggcgtggtggctcacacctgtaattacagctacttgggaggctgaggcaggagaattgcttgaaaccagcagccagaggttgcagtgagccaagatcgtgcaattgtactccagcctcggggacaagaacgaaactctctctcaa---aaaaacaaaaacaaaaacaaaaac-aaaacaaaaacaaGCCTTGGAGTTGTAGCCTCCACGAACTGTGATCCTTGGGAAAGTTAGGAAATCCCCCACTGGGAGTGAACCTGGGAAGCAGTTCTTCCCTATCTCTGTCATTGTCGT
i nomLeu3.chr6              N 0 C 0
s rheMac3.chr7              112789358 404 - 170124641 gtggctcatgcctgtaatcccagtactttgggaggccgaggcgggtggacca-------------------cctgaggtcaggagtttgagaccagcctggccagcatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctagcacctgtacttccagctacttgggaggctgaggc---aggagagc-tgaacctgagagctggaagttgcagtgagccaagattatgccattgtactccagcctgggggacaagaacaaaactctctctcaa---aaaaac-----------aacaaaacaaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTTGGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCTGGGAAGCAGTTCTTCCCTATCTCTGTCATTTTCGT
i rheMac3.chr7              N 0 C 0
s macFas5.chr7              114625614 404 - 171882078 gtggctcatgcctgtaatcccagtactttgggaggccgaggcgggtggacca-------------------cctgaggtcaggagtttgagaccagcctggccagcatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctagcacctgtaattacagctacttgggaggctgaggc---aggagagc-tgaacctgagagctggaagttgcagtgagccaagattatgccattgtactccagcctgggggacaagaacaaaactctctctcaa---aaaaac-----------aacaaaacaaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTTGGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCTGGGAAGCAGTTCTTCCCTATCTCTGTCATTTTCGT
i macFas5.chr7              N 0 C 0
s papAnu2.chr7              108883982 409 - 162156779 gtggctcatgcctgtaatcccagtactttgggaggccgaggcgggtggatca-------------------cctgaggtcaggagtttgagaccagcctggccagcatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctcgcacctgtaattacagctacttgggaggctgaggc---aggagagc-tgaacctgggagctggaagttgcagtgagccaagattatgccattgtactccagcctgggggacaagaacaaaactctctctcaa---aaaaac------aaaaaaacaaaacaaaac-aaaacgagcCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTTGGAAAAGTTAGGAAATCCCCCACTGGaaatgaacctgggaagcagttCTTCCCTATCTCTGTCATTTTCGT
i papAnu2.chr7              N 0 C 0
s chlSab2.chr26               4588792 409 +  58131712 gtggctcatgcctgtaatcccagtactttgggaggccgaggcgggtggatca-------------------cctgaggtcaggagtttgagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctcgcacctgtaattacagctacttgggaggctgaggc---aggagagc-tgaacctgggagctggaggttgcagtgagccaagattatgccatcgtactccagcctgggggacaagaacaaaactctctctcaa---aaaaac------aaaaaagcaaaacaaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTTGGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCTGGGAAGCAGTTCTTCCCTATCTCTGTCATTTTCGT
i chlSab2.chr26             N 0 C 0

a score=412847.000000
s hg38.chr15_KI270850v1_alt      2491 171 +    430880 CTCCTTGACCTGGGCTCCCCTC--------CTTATG-TTTTCTGGCCTGGattct-----cagatgaggaaactgaaactcacaaatatgcagtgactcagattatacaactattaaacggcccacttgggcctgccctgggtcttgt-tactttcaaagcccacgctcttgaca-----------gtgcattattt
s panTro4.chr15              79957577 182 +  99548318 CTCCTTGACCTGGGCTCCCCTC--------CTTATG-TTTTCTGGCCTGGattct-----cagatgaggaaactgaaactcacaaatatgcagtgactcagattatacaactattaaatggcccacttgggcctgccctgggtcttgt-tactttcaaagcccacgctcttgacacGCTCTTGACAGTGCATTATTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79903279 176 +  99152023 CTCCTTAACCTGGGCTCCCCTC--------CTTATG-TTTTCTGGCCTGGATTCTCCAAGcaggtgaggaaactgaaactcacaaatatgcagtgactcagattatacaactattaaatggcccacttgggcctgccctgggtcttgt-tactttcaaagcccacactcttgaca-----------gtgcattattt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22685700 172 - 121039945 CTCCTTGACCTGGGCTCCCCTC--------CTTATG-TTTTCTGGCCTGGATTCTCCAAGcagatgaggaaac--aaacccagggatatgcagtgactcagattatacaactattaagtggcccacttgggcctgccctgggtcttgt-tactttcaaagcccatgctct--ata-----------gtgcattattt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112789762 173 - 170124641 CTCCTTGACCTGGGCTCCCCTC--------CTCATGTTTTTCTGGCCTGGATTTTCCAAGcagatgaggaaac--aaacccagagacatgcagtgactcacattatacaactattaagtggcccacttgggcctgcccggggtcttgt-tactttcaaagcccatgctct--ata-----------atgcattattt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114626018 173 - 171882078 CTCCTTGACCTGGGCTCCCCTC--------CTCATGTTTTTCTGGCCTGGATTTTCCAAGcagatgaggaaac--aaacccagagacatgcagtgactcagattatacaactattaagtggcccacttgggcctgcccggggtcttgt-tactttcaaagcccatgctct--ata-----------atgcattattt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108884391 173 - 162156779 CTCCTTGACCTGGGCTCCCCTC--------CTCATGTTTTTCTGGCCTGGATTCTCcaagcagatgaggaaac--aaaccCAGAGACATGCAGTGACTCAGATTATACAACTATTAAGTGGCCCACTTGGGCCTGCCCGGGGTCTTGT-TACTTTCAAAGCCCATGCTCT--ATA-----------GTGCATTATTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4589201 173 +  58131712 CTCCTTGACCTGGGCTCCCCTC--------CTCATGTTTTTCTGGCCTGGATTCTCCAAGcagatgaggaaac--aaacccagagacatgcagtgactcagattatacaactattaagtggcccacttgggcctgcccggggtcttgt-tattttcaaagcccatgctct--ata-----------gtgcattattt
i chlSab2.chr26             C 0 C 0
s canFam3.chr3               58184859 160 +  91889043 CTTCTTGTCCTATGCTCCCTCCCCCCGGGGCTTCTG-TCCCCTGACCAGGGTTCCCCCTGTGGGTGGGGACAC--------AGAGGCTCACAGAGGCTCAG------CGACCATCCAGCGA-----------CTGCCCCCAAACTTTTCTGTGTTCCAAGCCCACATTCCTGACA-----------ATGCCTTATTT
i canFam3.chr3              N 0 C 0

a score=448000.000000
s hg38.chr15_KI270850v1_alt      2662 154 +    430880 tgtccatcCATTGTCTCCCATTTTACAAAACACATGCCTGGGCCAAGATTAAA-CTTCTTGTTGCCCATTCTTACTTTTGGCTTTT-CCCCACTTCTCTG-AGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
s panTro4.chr15              79957759 154 +  99548318 TGTCCATCCATTGTCTCCCATTTTACAAAACACATGCCTGGACCAAGATTAAA-CTTCTTGTTGCCCTTTCTTACTTCTGGCTTTT-CCCCACTTCTCTG-AGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79903455 154 +  99152023 tgtccctcCATTGTCTCCCATTTTACAAAACACATGCCTGGGCCAAGATTAAA-CTTCTTGTTGCCCATTCTTACTTCTGGCTTTT-CCCCACTTCTCTG-AGGGTTTACCACACAGTGCCCATACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22685872 151 - 121039945 cgtccctcCATTGCCTCCCATTTTACAAAACACATGCCTGGACCAAGATTAAA----CTTGTTGCCCATTCTTACTTCTGGCTTTT-CCCCACTTCTTGG-AGAGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112789935 151 - 170124641 tgtccctcCATTGCCTTCCATTTTACAAAACACATGCCTGGGCCAAGATTAAA-CTTCTTGTTGCCCATT----CTTCTGGCTTTTCCCCCACTTCTCTG-AGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i rheMac3.chr7              C 0 I 312
s macFas5.chr7              114626191 151 - 171882078 tgtccctcCATTGCCTTCCATTTTACAAAACACATGCCTGGGCCAAGATTAAA-CTTCTTGTTGCCCATT----CTTCTGGCTTTTCCCCCACTTCTCTG-AGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i macFas5.chr7              C 0 I 322
s papAnu2.chr7              108884564 151 - 162156779 TGTCCCTCCATTGCCTTCCATTTTACAAAACACATGCCTGGGCCAAGATTAAA-CTTCTTGTTGCCCATT----CTTCTGGCTTTTCCCCCACTTCTCTG-AGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4589374 151 +  58131712 tgtccctcCATTGCCTTCCATTTTACAAAACACATGCCTGGGCCAAGATTAAA-CTTCTTGTTGCCCATT----CTTCTGGCTTTTCCCCCACTTCTCTG-AGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113714834 150 - 132174527 TATTCCTCCTTTTTCTCCCATTTTACAAAACGCATGCCTGGGTCAAGATAAAA----CTTGTTGCTCATTCTTACTTCCGGCTTTT-CCCCACTTCTTTG-AGGGTTTATCACATGGTACCC-TACCACCAAGAGGCCCTCCTTGTCTCCACGGTTG
i calJac3.chr10             N 0 C 0
s canFam3.chr3               58185019 120 +  91889043 CATCACTCCATGGTCTT--GTTTTACAAGACGTGGGCGTTGCCTGAGCCTACAGCATCTAGTC-----------CTCCTGGG-----GCCCATCACCCGGCAGGGTCCATCACCTGGTGTCT-----GCCACGGGACCCTCCG--------------
i canFam3.chr3              C 0 C 0

a score=39688.000000
s hg38.chr15_KI270850v1_alt      2816 18 +    430880 AATTAACATATGTTAAGG
s panTro4.chr15              79957913 18 +  99548318 AATTAACATATGTTAAGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79903609 18 +  99152023 AATTAACATATGTTAAGG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686023 18 - 121039945 AATTAACATATATTAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112790398 18 - 170124641 aaTTAACATATGTTAAGG
i rheMac3.chr7              I 312 C 0
s macFas5.chr7              114626664 18 - 171882078 aaTTAACATATGTTAAGG
i macFas5.chr7              I 322 C 0
s papAnu2.chr7              108884715 18 - 162156779 AATTAACGTATGTTAAGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4589525 18 +  58131712 AATTCACATATGTTAAGG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113714984  6 - 132174527 AATTAA------------
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58185139  9 +  91889043 ---------GAGTCAGAG
i canFam3.chr3              C 0 C 0

a score=404684.000000
s hg38.chr15_KI270850v1_alt      2834 114 +    430880 GACATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCCAACGCATTC--------ATAAGGTGCCATCCCTTCCCCTTGCTTGGACCTTGTCAGCACTGTGCCAGA-GTGGGGGTCT
s panTro4.chr15              79957931 114 +  99548318 GACATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCCAATGCATCC--------ATAAGGTGCCATCCCTTCCCCTTGCTTGGACCTTGTCAGCACTGTGCCAGA-GTGGGGGTCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79903627 114 +  99152023 GACATCTCAAATACATCCTCCTTGATGAAACTTTTCTTCATTCCAATGCATTC--------ATAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTCAGCACTGTGCCAGA-GTGGAGGTCT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686041 114 - 121039945 GACATCTCAAATGCATCCTCCTTGATGAATCTTTTCTTCATTCCAATGCATCC--------ATAAGGTGTCATCCTCTCCCCTTGCTTGGACCTTGTCAGCACTGTGCCAGA-GTGGGGGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112790416 114 - 170124641 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------ATAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTCAGCACTGTGTCAGA-GTGGGGGTCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114626682 114 - 171882078 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------ATAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTCAGCACTGTGTCAGA-GTGGGGGTCT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108884733 114 - 162156779 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------ATAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTCAGCACTGTGCCAGA-GTGGGGGTCT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4589543 114 +  58131712 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------ACAAAGTGTCATCCCCTCCCCTTGCTTGGACCTTGTCAGCACTGTGCCAGA-GTGGGGGTCT
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113714990 109 - 132174527 --CATCTAAAATGCACCCTCCCTGATGAAACTTTTCTTCATTCCAATGCATCC--------ATAAGGTGTCATCCCCTCCCCTTGCTTGGATCTT---AGCACTGTGCCAGA-GTGGGCACCT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90165543 122 + 124595110 GACGTTTACAATGGGCTGTCTCTGATGAAGATCTCTCTCATCCCAGTCCATTCCAGTCTAAGCAAGGCAGTGTCTCCATCCTTTGCTTGGACTTTCTCTATACTGTGCCAGG-GTGAGAGGCT
i mm10.chr9                 N 0 I 20
s canFam3.chr3               58185148 108 +  91889043 GACTGCACACA-GCACCCTCCCTGATGAGGCTTTTCTTAACCTCAGCCTATCT--------GT---GTGACATCCCCTCCCC--AGCTGGACCAC-TCAGTCCTGGGCCAGGCATCAGGGTCA
i canFam3.chr3              C 0 C 0

a score=36311.000000
s hg38.chr15_KI270850v1_alt      2948 13 +    430880 TGGGTCTACCACA
s panTro4.chr15              79958045 13 +  99548318 TGGGTCTACCACA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79903741 13 +  99152023 TGGGTCTACCACA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686155 13 - 121039945 TGGGTCTACTACG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112790530 13 - 170124641 TGGATCTACCACA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114626796 13 - 171882078 TGGATCTACCACA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108884847 13 - 162156779 TGGATCTACCACa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4589657 13 +  58131712 TGGATCTACCACA
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113715099 13 - 132174527 TGTGTCTCTCACA
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58185256 13 +  91889043 GGAGTGCCCGACA
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90165665 20 + 124595110 I

a score=51352.000000
s hg38.chr15_KI270850v1_alt      2961 21 +    430880 CCCAtttttctgctttgtttt
s panTro4.chr15              79958058 21 +  99548318 CCCAtttttctgctttgtttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79903754 21 +  99152023 CCCAtttttctgttttgtttt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686168 21 - 121039945 CCCAtttttctgttttgtttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112790543 18 - 170124641 CCCAtttttctgtttt---tg
i rheMac3.chr7              C 0 I 17
s macFas5.chr7              114626809 21 - 171882078 CCCAtttttctgttttgtgtg
i macFas5.chr7              C 0 I 17
s papAnu2.chr7              108884860 21 - 162156779 cccatttttctgttttttttt
i papAnu2.chr7              C 0 I 19
s chlSab2.chr26               4589670 21 +  58131712 CCCATTTTTCTGTTTTTTTTT
i chlSab2.chr26             C 0 I 31
s calJac3.chr10             113715112 21 - 132174527 CCCACTTTGCTAttttgttct
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90165665 20 + 124595110 I
e canFam3.chr3               58185269  0 +  91889043 C

a score=9112.000000
s hg38.chr15_KI270850v1_alt      2982 16 +    430880 -----ctgtttttttgtgggg
s panTro4.chr15              79958079 16 +  99548318 -----ctgtttttttgtgggg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79903775 15 +  99152023 -----ctg-ttttttgtgggg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686189 15 - 121039945 -----ttg-ttttttttgggg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112790578 12 - 170124641 -----gtgtgtgt----gggg
i rheMac3.chr7              I 17 I 2
s macFas5.chr7              114626847 16 - 171882078 -----gtgtgtgtttgggggg
i macFas5.chr7              I 17 I 2
s papAnu2.chr7              108884900 16 - 162156779 -----gtgtgtgtttgggggg
i papAnu2.chr7              I 19 I 2
s calJac3.chr10             113715133 20 - 132174527 tttttttgtgttttttttgg-
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90165665 20 + 124595110 I
e canFam3.chr3               58185269  0 +  91889043 C
e chlSab2.chr26               4589691 31 +  58131712 I

a score=817684.000000
s hg38.chr15_KI270850v1_alt      2998 278 +    430880 gtcag--agtctcgctctgtcatccaggctggagtacagtggcacagtctctgctcactgcaacctccacctcctaggctcaagtgatcctcccacttcagcctccagagtagctgaaactacaggcatacaccaccacgcctggctaatttttgta-ttttttgtagagatgggatttcaccgtgttgcccaggctggtctggaactcctgagctcaagcaatctgccctcctcggtcttccaaagtgctgcgattacaggtgtgagccactgcgtccgg
s panTro4.chr15              79958095 278 +  99548318 gtcag--agtctcgctctgtcatccaggctggagtacagtggcacagtctctgctcactgcaacctccacctcctaggctcaagtgatcctcccacttcagcctccagagtagctgaaactacaggcatacaccaccgcgcctggctaatttttgta-ttttttgtagagatgggatttcaccatgttgcacaggctggtctggaactcctgagctcaagcaatctgccctcctcggtcttccaaagtgctgcgattacaggtgtgagccactgcgtccag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79903790 278 +  99152023 gtcag--agtctcactctgtcatccaggctggagtacagtggcacaatctctgctcactgcaacttccacctcctaggctcaagtgatcctcccacttcagcctctagagtagctgaaactacaggcatacaccaccatgcctggctaatttttgta-ttttttgtagagatgggatttcaccatgttgcacaggctggtctggaactcctgagctcaagcaatctgccctcctcggtcttccaaagtgctgcgattacaggtgtgagccactgcgtccgg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686204 277 - 121039945 gggagtcattcttgctctgtcatcccggctggagtacagtggtacaatttctgctcactgcaacctccgcctcccaggctcaagtgatcctcccacctcagcccccagagtagctgagactaaaggcatacaccaccacgcctggctaatttttgta-ttttttgtagagatgggatttcaccatgttgcctaggccggtctcgaactc---aactcaagcaatctgccctcctccgtcttccaaaatgctgcgattacaggtgtgagccactgggtccgg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112790592 278 - 170124641 gtcag--agtcttgctctgtcatccaggctggagtacagtggtgcagtctctgctcactgcaatctctgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaacaccacgcctggctaatttttgta-ttttttgtagagataggatttcaccatgttgcctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i rheMac3.chr7              I 2 C 0
s macFas5.chr7              114626865 278 - 171882078 gtcag--agtcttgctctgtcatccaggctggagtacagtggtgcagtctctgctcactgcaatctctgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaacaccacgcctggctaatttttgta-ttttttgtagagataggatttcaccatgttgcctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i macFas5.chr7              I 2 C 0
s papAnu2.chr7              108884918 278 - 162156779 gtcag--agtcttgctctgtcatccaggctggagtacagtggtgcagtctctgctcactgcaatctccgcctcccaggctcaagtgatcctcccaccttagcctctggaggagctgagactacaggcatacaccaccacgcctggctaatttttgta-ttttttgtagagataggatttcaccatgttgcctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i papAnu2.chr7              I 2 C 0
s chlSab2.chr26               4589722 278 +  58131712 gtcag--agtcttgctctgtcatccaggctggagtacagtggtgcagtctctgctcactgcaatctccgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaccaccacgcctggctaatttttgta-ttttttgtagagataggatttcaccatgttgcctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i chlSab2.chr26             I 31 C 0
s calJac3.chr10             113715153 278 - 132174527 gtcag--aatctccctctattacccaggctggagtacagcggcacagtctctgctcattgtaacctccg-ctcccacgctcgagtgatcctcgtacctcaacctctggagttgctaggactacaggcatacaccaccatgcctggctaatttatgtatttttttatagagacggaatttcaccatgttgcccaggctggtctcaaactcctgacctcaagcaatctgccctccttggtcttccaaagtgctgcgattacaggtgggagccactgtgcccgg
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90165665  20 + 124595110 I
e canFam3.chr3               58185269   0 +  91889043 C

a score=18261.000000
s hg38.chr15_KI270850v1_alt      3276 5 +    430880 ccATT
s panTro4.chr15              79958373 5 +  99548318 ccATT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79904068 5 +  99152023 tcATT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686481 5 - 121039945 ccATT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112790870 5 - 170124641 ccATT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114627143 5 - 171882078 ccATT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108885196 5 - 162156779 ccatt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4590000 5 +  58131712 ccATT
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113715431 5 - 132174527 ccATT
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58185269 5 +  91889043 CCAGT
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90165665 20 + 124595110 I

a score=1657915.000000
s hg38.chr15_KI270850v1_alt      3281 448 +    430880 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTGTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatggactaggcag---gtaacataaatgagcaaacgaggtgggtagggaGACAGatttttcctgaaacatggggcttcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atg--ggaaagggagcctacttg----cagccacagtgctgggaatgaatagggagtggtggggactgag--gaccggggagcataggcccttcctaaagggaactcactgctccaccccagccacttctgccagggagcaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgagatt-----tttgta
s panTro4.chr15              79958378 448 +  99548318 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTGTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACACTTAGTAGCcaagggtcacataccgaatgccatggactaggcag---gtaacataaatgagcaaacgaggtgggtagggaGACAGatttttcctgaaacatggggcttcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgagaggaaacacaagcatg----------------------atg--ggaaagggagcctacttg----cagccacagtgctgggaatgaatagggagtggtggggactgag--gaccggggagcataggcccttcctaaagggaactcactgctccaccccagccacttctgccagggagcaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgagatt-----tttgta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79904073 447 +  99152023 TCTCCA-TTTGA--AAGCAAGGATGGCGTCTTATCCACTGTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACAGTTAGTAGCCAAGGGTCACATACCGAATGCCATGGACTAGGCAG---GTAAC-TAAATGAGCAAACAAGGTGGGTAGGGAGACAGatttttcctgaaacatggggcttcttggcccatctcttg-ttttcccactttcgttagagactcagttctttactgagtgaaaggaaacatgagcatg----------------------atg--ggaaagggagcctacttg----cagccacagtactgggaatgaatagggagtggtagggactgag--gaccggggaccataggcccttcctaaaggaaactcactgctccaccccagccacttctgccggggagaaatttaagcctgaaatggatggatgataagacttttcaagaaaagctgaaaattgagatt-----tttgta
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686486 448 - 121039945 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTACCCACTTTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACAGTTAGTAGCcaagggtcacataccgaatgccatggagtaggcag---gtaacataaatgagcaaacaaggtgggtagggaGACAGatttttcctgaaacatggggcttcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atg--ggaaagggagcctacttg----cagccacagtactgggaatgaatagggagtggtggggactgag--gaccggggagcataggcccatcctaaagggaactcactgctccaccccagccacttctgccagggagcaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgagatt-----tttgta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112790875 448 - 170124641 Tctcca-tttga--aggcaaggatggtgtcttatccactttcctggactttggagcacctagtgcaCCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatggactaggcag---gtaatgtaaatgagcaaacgaggtgggcagggaGACAGatttttcctgaaacgtggggcctcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atg--ggaaagggagcctacttg----cagccgcagtactgggaatgaatagggagtggtggggactgag--gactggggagcataggcccttcctaaagggaactcactgctccaccctggccacttctgccaggcagaaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgagatt-----tttgta
i rheMac3.chr7              C 0 I 314
s macFas5.chr7              114627148 448 - 171882078 TCTCCA-TATGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatggactaggcag---gtaatgtaaatgagcaaacgaggtgggcagggaGACAGatttttcctgaaacgtggggcctcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atg--ggaaagggagcctacttg----cagccacagtactgggaatgaatagggagtggtggggactgag--gactggggagcataggcccttcctaaagggaactcactgctccaccctggccacttctgccaggcagaaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgagatt-----tttgta
i macFas5.chr7              C 0 I 322
s papAnu2.chr7              108885201 448 - 162156779 TCTCCA-TTTGA--AGGCAAGGATGGTATCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCCAAGGGTCACATACCAAATGCCATGGACTAGGCAG---GTAATGTAAATGAGCAAACAAGGTGGGCAGGGAGACAGATTTTTCCTGAAACGTGGGGCCTCTTGGCCCATCTCTTG-TTTTCCCACTTTTGTTAGAGACTCAGTTCTTTACTGAGTGAAAGGAAACACAAGCATG----------------------ATG--GGAAAGGGAGCCTACTTG----CAGCCACAGTACTGGGAATGAATAGGGAGTGGTGGGGGCTGAG--GACTGGGGAGCATAGGCCCTTCCTAAAGGGAACTCACTGCTCCACCCTGGCCACTTCTGCCAGGCAGAAATTTAAGGCTGACATGGATGGATGATAAGACTTttcaagaaaagctgaaaattgagATT-----TTTGTA
i papAnu2.chr7              C 0 I 325
s chlSab2.chr26               4590005 448 +  58131712 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagggtcacataccaaatgccattgactaggcag---gtaatgtaaatgagcaaacaaggtgggcagggAGACAGatttttcctgaaacgtggggcctcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atg--ggaaagggagcctacttg----cagccacagtactgggaatgaatagggaatggtggggactgag--gactggggagcataggcccttcctaaagggaactcactgctccaccctggccacttctgccaggcagaaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgagatt-----tttgta
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113715436 443 - 132174527 TCTCTA-TTTGA--AGGCAAGGCTGGTGTGTTATCCACTTTCCTGGACATTGGAGCACCTTGTGCCCTCTCACAGTTAGTAGCCAAGGGTCACATACTGGATGCCATGGACTAGGCAG---GTAGCGGAAATGAGCAAACGAAGTGGGTAGGGAGACAGatttttcttgaatcatggcgcctcttggcctgtctcttg-ttctctcacttttgt--gagactcagttctttactgagtgaaaggaaacacaagcatg----------------------ctg--tgaaagcaagtgtacagg----cagacacagtgctgggaacgaatagggagtggtggcgactgag--gacc-gggagcacagccccttcctaaagggaacgcactgctccaccctggccacttctgccaggaaggaatttaagcctgacattcac--atgataagacttttccagaaaagctgaaagttgagatt-----tttgta
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90165685 446 + 124595110 TCTCTC-TTTGATGGGGTTAGGGTAGTGTCTTTTGCATTTCCCTGGACTTTGGAACACCAAATGCTTCCAAACAGTTAGTATCCAGGG--CATACGCCAGGTGTCGTGAACCCAGCATTTCATAACAGAAATGAGCAAACAAGGCTGGTGGAAAGACAGATTTGTTTAGAGATAATGGGC-TCTTGGCCCGTTTATTGCTTTTTCCACCTTGGTTAGAGATGAAGTTCTTCACT---------GAAATACATGCACG----------------------ATACTGAACAGGCAACCTGTCTATACTCAGCCTCAGTGTCTGCCAC-AGTAGTAAGTAgtggggacagagacagatggggagcacagg----tttcaaagg--actcactgcttctctccagccccctttgacaggtatggatttaggtctgatgtgtgtagataacaaaac--ttcaaggaaggcttggaatggaaattgtgtgtgtgtg
i mm10.chr9                 I 20 I 7
s canFam3.chr3               58185274 424 +  91889043 TCCCTGTTTTGA--AGGGAAGGATGGTGTCTCATACATTTTCCTGGACTTCGGAGCAACTACCGCTCCCTCACAATCAGTAGCCCAGTGTGACACATCAGGTGCCGTCCCCCAGGGCA---GCAAC----ATGGGTGAACAAGCCTGGCAGG--------------------------------TGGCCCATCTCCTG-TTTCTCCATTTCTGTTAGAAATTCAGTTCTTTAGTCACTGAAAGACAGCATAACTAGGAGGCAGTCAGTGGCAGTTGGGAATA--GAAGAGGGAGCC-----G----TGGGGACTGGGCGGGGGGTGGG-AGGGGGTGGGGGGCAGCCAG--G---GTGGAGTACAGGCCCTCTCCCAGGGG--CTCCTTGCTCTACCGCAGCCACTTCTGCTGGGTGGAGATTGAGGTCTGACATGTATGAATGATAAGGCTTTTCGGAGAAAGCTGAAAATTGAAATT-----TTTGGA
i canFam3.chr3              C 0 C 0

a score=40672.000000
s hg38.chr15_KI270850v1_alt      3729 9 +    430880 caagatcat
s panTro4.chr15              79958826 9 +  99548318 caagatcat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79904520 9 +  99152023 caagatcat
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686934 9 - 121039945 caagatcat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112791637 9 - 170124641 caagatcat
i rheMac3.chr7              I 314 C 0
s macFas5.chr7              114627918 9 - 171882078 caagatcat
i macFas5.chr7              I 322 C 0
s papAnu2.chr7              108885974 9 - 162156779 caagatCAT
i papAnu2.chr7              I 325 C 0
s chlSab2.chr26               4590453 9 +  58131712 caagatcat
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113715879 9 - 132174527 caagattgt
i calJac3.chr10             C 0 I 318
s mm10.chr9                  90166138 9 + 124595110 aaagatcat
i mm10.chr9                 I 7 C 0
s canFam3.chr3               58185698 9 +  91889043 TAAGATCAT
i canFam3.chr3              C 0 C 0

a score=8885.000000
s hg38.chr15_KI270850v1_alt      3738 3 +    430880 gtg
s panTro4.chr15              79958835 3 +  99548318 gtg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79904529 3 +  99152023 atg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686943 3 - 121039945 gtg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112791646 3 - 170124641 gtg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114627927 3 - 171882078 gtg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108885983 3 - 162156779 GTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4590462 3 +  58131712 gtg
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  90166147 3 + 124595110 ata
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185707 3 +  91889043 GTA
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113715888 318 - 132174527 I

a score=18148.000000
s hg38.chr15_KI270850v1_alt      3741 4 +    430880 attc
s panTro4.chr15              79958838 4 +  99548318 attc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79904532 4 +  99152023 attc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686946 4 - 121039945 attc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112791649 4 - 170124641 attc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114627930 4 - 171882078 attc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108885986 4 - 162156779 ATTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4590465 4 +  58131712 attc
i chlSab2.chr26             C 0 I 315
s calJac3.chr10             113716206 4 - 132174527 attc
i calJac3.chr10             I 318 C 0
s mm10.chr9                  90166150 4 + 124595110 attt
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185710 4 +  91889043 ATTT
i canFam3.chr3              C 0 C 0

a score=30057.000000
s hg38.chr15_KI270850v1_alt      3745  9 +    430880 -----------------------ctaaacatt
s panTro4.chr15              79958842  9 +  99548318 -----------------------ttaaacatt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79904536  9 +  99152023 -----------------------ttaaacatt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686950  9 - 121039945 -----------------------ttaaacatt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112791653  9 - 170124641 -----------------------ttaaacatt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114627934  9 - 171882078 -----------------------ttaaacatt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108885990  9 - 162156779 -----------------------TTAAACATT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4590784  9 +  58131712 -----------------------ttcaacatt
i chlSab2.chr26             I 315 C 0
s calJac3.chr10             113716210  9 - 132174527 -----------------------ttaaacatt
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90166154  9 + 124595110 -----------------------ttagacatt
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185714 32 +  91889043 TTATTTGTATTTATTTAtttatttttaagatt
i canFam3.chr3              C 0 I 193

a score=1842515.000000
s hg38.chr15_KI270850v1_alt      3754 498 +    430880 ggcaattgactaaaacatttttcaatatttgtgtcagccaaaacaaaccaA-AAAATCAATA-ACTGATCAACACAAGCAAATCTGCACGCTGTGGTTGAGGAGTTGTAGTCCCATATGTCCTTATtaggatgtcagagcaagaagtcaccttaaatcatccagtccGGTGGTTTCTGAATGCCAGCCtctgaactggctagatcagaatccctgggaaggtctagaaaaacacagaaaatacacattctagggcccccagagccctggatctgtggaactagaatctctgggctgggtcctgggcatctgcagtttttcagagct---ctccacgtactgctgatgaccagccaggttCACTCCCAGTGGGGgatt-tcctaactttcctgaggatcacagctcccggaggttcttggt---------------------aaaaac--agcttcctagtccctagtcctagtttcctggaaatgctggtatagtgagtctgggatggggcctgggaatttgttttt
s panTro4.chr15              79958851 498 +  99548318 ggcaattgactaaaacatttttcaatatttgtgtcagccaaaacaaaccaA-AAAATCAATA-ACTGATCAACACAAGCAAATCTGCACGCTGTGGTTGAGGAGTTGTAGTCCCATATGTCCTTATtaggatgtcagagcaagaagtcaccttaaatcatccagtcGGgtggtttctgaatgccagcctctgaactggctagatcagaatccctgggaaggtctagaaaaacacagaaaatacacattctagagcccccagagccctggatctgtggagctagaatctctgggctgggtcctgggcatctgcagtttttcagagct---ctccacgtactgctgatgaccagccaggttCACTCCcagtgggggatt-tcctaactttcctgaggatcacagttcccggaggttcttggt---------------------aaaaac--agcttcctagtccctagtcctagtttcctggaaatgctggtatagtgagtctgggatggggcctgggaatttgttttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79904545 500 +  99152023 ggcaactgactaaaacatttttcaatatttgtgtcagccaaaacaaaccaA-AAAATCAATA-ACTGATCAACACAAGCAAATCTGCACGCTGTGGTTGAGGAGTTGTAGTCCCATATGCCCTTATtaggatgtcagagcaagaagtcgccttaaatcatccagtcTGGTGGCTTCTGAATGCCAGCCtctgaactggctagatcagaatccctgggaaggtctagaaaaacacagaaaatacacgttctagggcccccagagccctggatctgtggaactagaatctctgggctgggtcctgggcaactgcagtttttcagagct---ctccaggtactgctgatgaccagctaggttCACTCCcagtgggggatt-tcctaactttcctgaggatcacagttcccggaggctcttggt---------------------aaaaacatagcttcctagtccctagtcctagtttcctggaaatgctggtatagtgagtctgggatggggcctgggaatttgtttct
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22686959 500 - 121039945 ggcaattgactaaaacatttttcaatatttgtgtcagccaaaacaaaccaA-AAAATCAATA-ACTGATCAACACAAGCAAATCTGCACGCTGTGGTTGAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCGCCTTAATTCATCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaatacacattctagggcccccagagccctggatctgtggaaccagaatctctgggctgggtcctgggcatctgcagtttttcagagct---ctccaggtactgctgatgaccagccaggttCACTCCCAGTGGGGGATTATCCTaactttcctgaggatcacagttcccggaggctcttggt---------------------aaaaacatagcttcctagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatggggcctgggaattt-ttttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112791662 496 - 170124641 ggcagttgactaaaacgtttttcagtatttgtgtcagccaaaacaaaccaA-AAAATCAATA-ACTGATCAACACAAGCAAATCTGCACGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaacacacattcta-ggcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtactg-tgatgaccagtcaggttCACTCCCAGTGGGGgatt-tcctaactttcctgaggatcacagttcctggaggctcttggt---------------------aaaaacatagcttcccagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-ttttt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114627943 496 - 171882078 ggcagttgactaaaacgtttttcagtatttgtgtcagccaaaacaaaccaA-AAAATCAATA-ACTGATCAACACAAGCAAATCTGCACGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaacacacattcta-gtcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtACTG-TGATGACCAGTCAGTTTCACTCCCAGTGGGGgatt-tcctaactttcctgaggatcacagttcctggaggctcttggt---------------------aaaaacatagcttcccagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-ttttt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108885999 497 - 162156779 GGCAGTTGACTAAAACGTTTTTCAGTATTTGTGTCagccaaaacaaaccaa-aaaatcaaTA-ACTGATCAACACAAGCAAATCTGCACGCTGTGATTAAGGAGTTGTAGTCCCATATACCCTTATTAGGATGTCAGAGCAAGGAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAATTGGCTAGATCAGAATCCCTGGGAAGGtctagaaaaatacagaaaacacacaTTCTAGGGCCCCCAGAGCCCTGGATCTGTGGAACCAGAATCTCTGGGCTGGGTCCT-GGCATCTGCAGTTTTTCAGAGCT---CTCCAGGTACTG-TGATGACCAGTCAGGTTCACTCCCAGTGGGGGATT-TCCTAACTTTCCTGAGGATCACAGTTCCTGGAGGCTCTTGGT---------------------AAAAACATAGCTTCCCAGTCCCTAGTCCTAGTTTCCTGGAAATGCTGATTTAGTGAGTCTGGGATGGGACCTGGGACTCT-TTTTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4590793 497 +  58131712 ggcagttgactaaaacgtttttcagtatttgtgtcagccaaaacaaaccaA-AAAATCAATA-ACTGATCAACACAAGCAAATCTGCATGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATTTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaatacacgttctagggcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtactg-tgatgaccagtcaggttCACTCCCAGTGGGGgatt-tcctaactttcctgaggatcacagttcctggaggctcttggt---------------------aaaaacatagcttcccagtccctagtcctactttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-ttttt
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113716219 486 - 132174527 ggcaattgactgaaacatttttcatcatttgtgtcagccaaaacaaaccaA-AAAATCAATA-ACTGATCAACACAG------CTGCACGCCGTAGCTGAGGAGTTGTAGTCCCACGTGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCATCCAGCCTGGTGGTTTCTGAATGCCAGCCTCTGAGttggctagatcagaatcactgggaaggtctagaaaaatacagaaaatacatattctagggcccccagagccctggacctgtggaaccagaatctctgggctgggcccggggcatctgcggtttttcagcgct---ctccaggtactgctgatgaggag-cAGTTTTACTTCCAGTGGGGgatt-tcctaactttccagaggatcacagttcccagaggctcttgat---------------------aaaaacatagcttcctagttcc-------agtttctaggaaatgctgatttagtgagtctgcgatggggcctgggagtttgttttt
i calJac3.chr10             C 0 I 304
s mm10.chr9                  90166163 442 + 124595110 agaaattaact--aatttttcccaatatatgtgcc-------------------aataaata-------------gaacaggcctgcagtctatggTCAAGGGGTAGTAGTCTCAAATACTCTTATTAGGGTGCCAGGGCAGCAAGC--------------------------------ATGCTAGCCACTGAAAGGACCCAGTTAGAACCCCTGGGAAGGT----ACGATTACACAGCCTATACATCATG-GGACCCTAGAACCCCAAACCTACAGTAGAGCAGTCTGTTGGCTAGGTCTTATGTGCCTGTAGCTTTTCAAAGCT---CTGTAGGTACCACTGAAGGTCAGTCAAGTTCACTCCCAGTGAGAGATT-T-CTATCTTTCCCCACAGTC-CAGTTCCCTGAGGCTTTTGCTATaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCTTCTTCATCCTC--------CTTTGTGgagatgctgattcagtgagtctgggatggggcctgggaatttgttttt
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185939 489 +  91889043 GGCAACTGATT-AAATATTTTTCAATATTTGTGCAAGTTGAAACGAACAAACAAGATCAATAAACTGACAAA---AACCAAATCTGCAGGCAGTGATTGTGGAGCTGTAATCCCAAATACCCTCATTAGGACGTCAGAGCAAGGAGCCTCCTTGAACCAGCCTGCCCACTGGCTTCCAAAGGTCAGCCTCGGAAACAGTCCAGTCTGAGTCCCTGTG-AGGcttaggaaaatatggaaaatgcagattctg-gggccccagagccctaggtctatggaatc--catctgtgggctgtgttctcagcctctgtagcctttcagagctctcctccaggtactgctgatgctcggccaagttCACtctctgaggaggatt-tccggacttccctgatgatcacagtcccctgaggcccttggc--------------------aaaaaacacagcttcccagtccc--------atttcctggagatgctgaatcagtgggtctgcaat-ggctctgggaatttgatttt
i canFam3.chr3              I 193 C 0

a score=1382145.000000
s hg38.chr15_KI270850v1_alt      4252 404 +    430880 aagaaa--ctcATCTGTGAGATCTGGAAAATCCTTGCACTAGTGGCCCGTtgaggctcagtgatgaggaagacttgctcagagccacatagcacgttgccccagcccatccaacctcctg------actctcagagaaagctctttGAGGCCGGCACTGCTGGGGCAGTTGTGAGCAGTGGGAGATGCTCTCAGC-AGGGGCACAGCACTGACGTGTGCAGGGCACTCTACATGCAGTTTGGCAGGGGACAGACTGGAGGGCGGGTTTGGTTTCCGCAGCCT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAGGAATCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGTGAGCCCGTGGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
s panTro4.chr15              79959349 404 +  99548318 aagaaa--ctcATCTGTGAGATCTGGAAAATCCTTGCACTAGTGGCCCGTTGAGGCTCAATGATGAGGAAGACTTGCTCAGAGCCACACAGCACGTTGCCCCAGCCCATCCAACCTCCTG------ACTCTCAGAGAAAGCTCTTTGAGGCCGGCACTGCTGGGGCGGTTGTGAGCAGTGGGAGATGCTCTCAGC-AGGGGCACAGCACTGACGTGTGCAGGGCACTCTACATGCAGTTTGGCAGAGGACAGACTGGAGGGCGGGTTTGGTTTCCGCAGCCT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAGGAATCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGTGAGCCCGTGGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79905045 404 +  99152023 aagaaa--ctcATCTGTGAGATCTGGAAAATCCTTGCACTAGTGGCCCGTtgaggctcaatgatggggaagacttgctcagagccacacagcacgttgacccagcccatccaacctcctg------actctcagAGAAAGCTCTTTGAGGCCGGCACTGCTGGGGCGGTTGTGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGACGTGGGCAGGGCACTCTACATGCAGTTTGGCAGAGGACAGACTGGAGGGTGGGTTTGGTTTCTGCAGCCT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCCATGGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGTGTATA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22687459 404 - 121039945 aagaaa--cttctctgtgaGGTCTGCAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACGGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACTCTCAGAGAAAGCTCTTTGAGGCCGGCATTGCTGGGGCGGTTGTGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACGTGCAGTTTGGCAGAGGACAGACTGGAGGGCAAGTTTGGTTTCCGCAGCCT-GCTGGGATGGAGCTTCGGGCTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112792158 404 - 170124641 aagaaA--CTTATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTAACCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCTGGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTGGCAGAGGACAGACTGGAGGGCGGGTTTGGTTTCTGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114628439 404 - 171882078 aagaaa--ctTATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTAACCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCTGGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTGGCAGAGGACAGACTGGAGGGCGGGTTTGGTTTCTGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108886496 404 - 162156779 AAGAAA--CTTATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCACTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGAACGTTGCCCCAGCTTACCCAGTCTCTTG------ACTCTCAGAGAAGGTTCTTTGAGGCTGGCACTGCTGGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTGGCAGAGGACAGACTGGAGGGCGGGTTTGGTTTCTGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGAGCACTCAGG------CATTCATGCAAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4591290 398 +  58131712 aagaaa--ctTATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCTGGGGCGGTTGGGAGCAGAGGGAGAT------AGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTGGCAGAGGACAGACTGGAGGGCGGGTTTGGTTTCTGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113717009 384 - 132174527 aagaaa--CTTATCTGTGA-----GGAAAATCCTTGCACTAGTGGCTGCCTGAAGCTCAATGATGGG-------------GAGCCACATAGCAAGTTGCCCCAGTCCATCCAGCCTCCTG------ATTCTCAGAGAAGGCTCTTTGAGGCCGGCACTGCTGGGGCAGTTGTGAGCAGAGGGCAATGTTCTCAGCAAGGGGCACACCACTGGCATGTGCAGGGCACTCTACATGCAGTTTGGCAGAGGACAGACTGGAGGGTGGGTTTGGTTTCTGCAGCAT-ACTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAAGACCCCTGGTGGGATGTCTGCAGGGCACTCAGG------CATTCACGTGAGCCAGAGGAGTCTACT---GTGGACAGCCAGGATCCTGG-AAGCTGGGTATA
i calJac3.chr10             I 304 I 2792
s mm10.chr9                  90166605 380 + 124595110 aagaaattcttgtccaggAAGTCTGGGAACTCTTTGCACTTCCCACCCCCTGAAGTTCATTGATTGGAAAGACTTGCTAAGAGCCACACAGCGATTCTTCCCAGCTCGCTC-GTCT-GTG------ACTCTCAGAGAG--------------------GTCAGGGCAGCCGTGGGCAAAGGGCCAGGTCTTGAGT-AGGGGCGCACCATTGGCATGTGAGTGGCACCCTGTGTGAGTTTTGGCAGCAGG-----TGGAGGGAGGGCTTGA-CTCTGTAACATGGCCATAGTTGAGCCTCTGGGTAGACTTAGTCTCCCAACTTGGCAGGTGGCAGCAAAGAGCTCAGGC--TATGTCTGCATGATACTTGGGCCAGAACATTTCTCTGGGCCTGAGGGGTCAGGTATCTGG-------------CTGA-AA----------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58186428 410 +  91889043 aacaaattcttcCCCAAGAAGCCTGGAAAATCCTTGTACTTGTGTCCTCCGGAGACT--GGGAGAGGGAACCTTTGCCCAGAACCACACAGAG---TGACCCTGCCCGTCT-GCCCCTCACTGAGTATCCTCCTGGACGGCACCCTGTGGGCTGCCCACC--AGGCGGCTG-GGGCATTCGGGCATGTCCTTGGC-GGGAGCACACCACTGGTGTGTGCAGGGCACGCTGCACGTGGTTTGGCAGGAGATGGCCAG----------TTGGTTTCTGCAGCCTGGCCAGGATGGAGCTTGGGGCTGGACTGGGCTGGGCTGCCCTTTCAGCCACAG-AGAAAGCCTGGGGGGCATTT--GCAGGGTGCCCAGA------CATTTCTATG-GCCCCAGGGGTC-ACTGTCCCGAGCAGCCAGGATTTGGGAGAGCTGGGCCTG
i canFam3.chr3              C 0 C 0

a score=329536.000000
s hg38.chr15_KI270850v1_alt      4656 141 +    430880 AACCCAATC----------------------GAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGGAAAA----------GAGTGGGAAAAGCAT--------GGATGCCAGGG------CTCCCCC-ACCCCCG----------------------------GCACATG-AGATTT------------CTTTTG-AGACT
s panTro4.chr15              79959753 142 +  99548318 AACCCAATC----------------------GAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGGAAAAA---------GGGTGGGAAAAGCAT--------GGATGCCAGGG------CTCCCCC-ACCCCCG----------------------------GCACATG-AGATTT------------CTTTTG-AGACT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79905449 142 +  99152023 AACCCAATC----------------------GAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGATGCAAAA----------GCAGAGGAAAAGCAT--------GGATGCCAGGG------CTCCCCCAACCCCCG----------------------------GCACATG-AGATTT------------CTTTTG-AGACT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22687863 152 - 121039945 AACTCAATC----------------------CAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTCAGAGCCTGGGAACTGCAGAGAGGGAAAAGGTGGTGGGCGGGGGGGGGAAGCAT--------GGATGCCGGGG------CTCCCCCAACGCCCG----------------------------GCACATG-AGATTT------------CTTTTG-AGACT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112792562 144 - 170124641 AATCCAATC----------------------AAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGGAAAAGGC-------CGGAGAGGAAAGCAT--------GGGTGCCC-GG------CTCTCCCAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTA-AGACT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114628843 144 - 171882078 AATCCAATC----------------------AAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGGAAAAGGC-------CGGGGAGGAAAGCAT--------GGGTGCCC-GG------CTCTCCCAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTA-AGACT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108886900 144 - 162156779 AATCCAATC----------------------GAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGGAAAAGGC-------CGGGGAGGAAAGCAT--------GGGTGCCC-GG------CGCTCCCAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTG-AGACT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4591688 144 +  58131712 AATCCAATC----------------------GAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGGAAAAGGC-------CGGGGAGGAAAGCAT--------GGATGCTC-GG------CTCTCCCAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTG-AGACT
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  90166985 146 + 124595110 AACCTCAGT----------------------GAA-----TCAGAGCAGCAAGTTTCCTGGCTGTGC---CTGGAGTCTAGGAACTGTGGAGAGGGAAAGGGC-------TAGGGGACAAGG-----------GAAGATCAGGG------GGCTCCC-AGCACCA----------------------------ATGTAGGTAGGTGtgcagaaaaaaagtttttg-agagt
i mm10.chr9                 C 0 I 118
s canFam3.chr3               58186838 200 +  91889043 TATCTGGTTCATCAGGGCAGGACCTTGGGCAGAAAGACCTCAGATGGGCCAGTTTCCTAA--GTGCTCCCCAGAGCCTGGGGACTGCAGAGGGAAAGGAGAC--------------AAGAGCATCAGCACCAGGATCCCTGGGACAACCCTCCCCC-ACCCCCACAGTAGTGCTGTTCTGATGTGTATGTGTCCATACA-AGATTT------------CTTTTGAAGAGT
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113717393 2792 - 132174527 I

a score=1177953.000000
s hg38.chr15_KI270850v1_alt      4797 408 +    430880 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactctttcacattaacgatggggaaactgaggcccagtaagggatggactgttgagaatataaagcaatgttactgaagagactgaaaccatttgggggacttgagtcccagtctcagcactgccactctcactgtcactgtgtggctctaggccaatctctccacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGG-ACACCCTACTGCAGGTGTCCTAACCTGGGGTCCACAGCCTAAGGG-ACCGTg-----aactgaggggatccatgagcttgaatgggaaaatattacatatttactttttgtaacctctcaatgaaatttagta-tttccctcaattatgaatattattagca
s panTro4.chr15              79959895 408 +  99548318 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactctttcacattaacgatggggaaactgaggcccagtaagggatggactgttgagaatataaagcaatgttactgaagagactgaaaccatttgggggacttgagtcccagtctcagcactgccactctcactgtcactgtgtggctctaggccaatctctccacctctctgagcctccctttgctgtctcacctaggaagtagTCTGG-ACACCCTACTGcaggtgtcctaacctggggtccacagcctaaggg-accatg-----aactcaggggatccatgagcttgaatgggaaaatattacatatttactttttgtaacctctcagtgaaatttagta-tttccctcaattatgaatattattagca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79905591 408 +  99152023 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactctttcacattaacgattgggaaactgaggcccagtaagggatggactgttgagaatatagagcaatgttactgaagagactgaaaccatttgggggacttgagtcccagtctcagcactgccactctcactgtcactgtgtggctctaggccagtgtctccacctctctgagcctccctttgctcTCTCACCTAGGAAGTAGTCTGG-ACACCCTACTGcaggtgtcctaacctggggtccacagcctaaggg-accgtg-----aactcaggggatccatgagcttgaatgggaaaatactacatatttactttttgtaacctctcaatgaaatttagta-tttccctcaattatgaatattattagca
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22688015 408 - 121039945 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactctttcatattaatgatggggaaactgaggcccagcaagggatggactgttgagaatatagagcaatgttactgaagagactgaaaccatttgggggactggagtcccagtctcagcactgccactctcactgtcactgtgtggctctaggccagtctctccacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGG-ACACCCTACTGcaggtgtcctaacctggggtccacagcctaaagg-actatg-----aactgaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaatgaaatttagca-tttccctcaattatgaatattattagca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112792706 408 - 170124641 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacaatggggaaactgaggcccagcaagggatggagtattgagaatatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcattcttactgtcactgtgtggctctaggccagcctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGG-ACACCTTACTGCAGGTGTCCTAACCTGGGCTTCACAGCCTAAGGG-ACTGTg-----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagca-tttccctcaattatgaatatcattagca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114628987 408 - 171882078 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacaatggggaaactgaggcccagcaagggctggagtattgagaatatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcattcttactgtcactgtgtggctctaggccagcctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGG-ACACCTTACTGCAGGTGTCCTAACCTGGGCTTCACAGCCTAAGGG-ACTGTg-----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagca-tttccctcaattatgaatatcattagca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108887044 408 - 162156779 AGACCTGGTGGCCAAA------------------------------------------------------------GAGATT--------------------------TGAGAAACGTGATCTAATTGAACTTTTTCACATTaatgatggggaaactgaggcccagcaaggGCTGGAGTATTGAGAATATAGAGCAATGTTACTGAAGAGACTGAAATCATTTGGGGGACTTGAGTTCCAGTCTCAGCACTGTCATTCTTACTGTCACTATGTGGCTCTAGGCCAGTCTgtctacctctctgagcctccctttGCTCTCTCACCTAGGAAGCAGTCTGG-ACACCTTACTGCAGGTGTCCTAACTTGGGCTTCACAGCCTAAGGG-ACTGTG-----AACTCAGGGGATCCATGAACTTGAATgggaaaatattacatatttactttttgtaACCTCTCAAAGAAATTTAGCA-TTTCCCTCAATTATGAATATCATTAGCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4591832 408 +  58131712 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacgatggggaaactgaggcccagcaagggctggagtgttgagagtatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcattcttactgtcactgtgtggctctaggccagtctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGG-ACATCTTACTGCAGGTGTCCTAACCTGGGCTTCACAGCCTAAGGG-ACTGTg-----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagct-tttccctcaattatgaatatcattagca
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  90167249 463 + 124595110 aaagctggtgattacactcaggctcacacacttgtatgcatgctatccatcactctgccgtcggagccgtatcccTGAGATTCCTTCTGAAGGCTAGCTATGGACTTCTAGGAAACCTG-TCTAGTCAAATTTCTTCATACCGATGGCGAG----------------AAAGGACAGCTGTCTGAGAGTATAGATGGATAGTACTGAAGA----GAAGCCATTTGGGAAAC--AGGGTCAGGTCTT--CATT----CCCTCATTCTCAGTGTGTGGCTTTAGCTTA----CTCTGCCTCTCGGAGTCCTCATTTACTCTCTTACCTGGCAGGCAGTCTGATATACCTTATTCTTGGTGCCCTAACCTAGAGTCTTCAGCCTGAGGGAACCACA-----AATTCCAGGAAGCAATGAACCTGGATTGGAAAATATAACACCCACAACTTTTATAACCTC-AAGTGATATTTAGCATTTTTTTTTGATTATAGATAAGATTAACA
i mm10.chr9                 I 118 I 960
s canFam3.chr3               58187038 348 +  91889043 AGATCTGGTGGCTAAA------------------------------------------------------------GAAGTT--------------------------TGAAACACTTAatctggtgcaactcctttatgtgagcgatgaggaaac--aggcctagcaaggaacgggctgctgagaatgcagaacgatgttcc-------------------cgggggacttggagcccaatctg-------------ctactctcgctttgtgGCTCAAGGCCGG-CTGTGTTCCTCTCTGAGCCT-----------------------GCAGCCTGC-AGATTTTCCCACGGGTGTCCTCCCCTGGACTCCACAGCCCCAGGG-AC-Gtgggcaaaatttagaggatccataaactctgatgggaagatattacgtctttaagttcttttacttct------aagttagca-tttccttcaattttgcatgttagcacca
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113717393 2792 - 132174527 I

a score=154859.000000
s hg38.chr15_KI270850v1_alt      5205 56 +    430880 aatcccaac---------agcacctgtgattttgttaccaatagaacaaaccaaatatttttcta
s panTro4.chr15              79960303 56 +  99548318 aatcccaac---------agcacctgtgattttgttaccaatagaacaaaccaaatatttttcta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79905999 56 +  99152023 aatcccatc---------agcacctgtgatttcgttaccaatagaacaaaccaaatatttttcta
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22688423 56 - 121039945 aatcccaac---------agcacctgtggttttgttaccaatacagcaaaccaaatatttttcca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112793114 56 - 170124641 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114629395 56 - 171882078 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108887452 56 - 162156779 AATCCCAAC---------AGCACCTGTGGTTTTGTTACCAATAGAACAaaccaaatatttttcta
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4592240 56 +  58131712 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i chlSab2.chr26             C 0 C 0
s canFam3.chr3               58187386 65 +  91889043 aactacaatagcattaggagcatctgtgactttgttaccgagctagaaaaccaaaccattttTTA
i canFam3.chr3              C 0 I 350
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I

a score=842374.000000
s hg38.chr15_KI270850v1_alt      5261 375 +    430880 tctcattacagttgttgcatgtatcttgaaataaggtttacgttcatcactacttcaaaatttccgtagttgctgggcatagtggctcacgcctataatcccagcacttttggaggctgaggtgagtggatcacttgaggccaggagttcaagaccagcctttccaacatggcaaaaccccatctctactaaaaatacaaaaacttgctgggtgtggtggtacgtgcctgtaatcccagctactcgcgaggctaagggacaagaattgcttgaacctgggaggcaggggttgcggtgagccaagattgagctactgtactccagcctgggtgacagagagagactctgtctcaaaaaaa-----------aaaaaaaaaaaa--------acca
s panTro4.chr15              79960359 372 +  99548318 tctcattacagttgttgcatgtatcttgaaataaggtttacgttcatcactacttcaaaatttccgtagttgctgggcatagtggctcacgcctataatcccagcacttttggaggctgaggtgagtggatcacttgaggccaggagttcaagaccagcctttccaacatggcaaaaccccatctctactaaaaatacaaaaacttgctgggtgtggtggtacatgcctgtaatcccagctacttgcgaggctaagggacaagaattgcttgaacctgggaggcaggggttgcggtgagccaagattgagctactgtactccagcctgggtgacagagagagactctgtctcaaaaaaa-----------aaaaaaaaaa-----------cca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79906055 383 +  99152023 tctcattacagttgttgcatgtatcttgaaataaggtttatgttcatcactacttcaaaatttccatagttgctgggcatagtggctcatgcctataatcccagcacttttggaggctgaggtgagtggatcacttgaggccaggagttcaagaccagccttgccaacatggcaaaaccccgtctttactaaagatacaaaaactcactgggtgtggtggcacgtgcctgtagtcccagctacttgggaggctaagggacaagaattgcttgaacctgggaggcggaggttgtggtgagccaagattgagctactgcactccagcctgggtaacagagaaagactctgtctcaaaaaaa-----------aaaaaaaaaaaaaaaaaatgacca
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22688479 371 - 121039945 tctcattacagttgttgcacgtatcttgaaataaggtttacgttcatcactacttcaaaatttccatagttgctgggcacagtggctcatgcctgtagtcccagcacttttggaggctgaggtaagtggatcactaaaggccaggagttcaagaccagccttgccaacatggcaaaacccagtctctactaaaaatacaaaaactcgctgggtgtggtggcatgcacctgtagtcccagctatttgaaaggctaagagacaagaattgcttgaacctgggaggcagaggttgcagtgagccaagattgagctactgcactgcaccctgggtgacagagagagactctgtctcaaataaa-----------aaaaaaaga------------cca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112793170 374 - 170124641 tctcattacgattgttgcacatatcttgaaataaggtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcctgtaatcccagcacttttgggggctgggggaagtgggacactcaaggtcaggagttcaagaccagccttgccaacatggcaaaaccctgtgtctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccaagattgagctactgcactacagcctgggtgacagagagagactctgtcacaaaa--------------aaaaaacaaaa------agaatca
i rheMac3.chr7              C 0 I 32
s macFas5.chr7              114629451 379 - 171882078 tctcattacgattgttgcacatatcttgaaataaggtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggtcaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccaagattgagctactgcactacagcctgggtgacagagagagactctgtcacaaaaaac-----------aaaaaacaaaaa----caaaacca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108887508 389 - 162156779 tctcaTTACGATTGTTGCACGTATCTTGAAATAAGGTTTACGTTCATCACTACTTCAACATTTCCATAGTTGCccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggccaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaGGTGtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgcgttgagccaagattgagctactgcactacagcctgggtgacagagagagactctgtcacaaaaaacaaaaaaaacaaaaaaaacaaaaa-----aaaacca
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4592296 369 +  58131712 tctcattacgattgttgcacgtatcttgaaataaggtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggccaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccaagattgagctactgcactacagcctgggtgacagagagagactctgtcacacccaaca----------aaaaaacca---------------
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58187451 350 +  91889043 I

a score=52943.000000
s hg38.chr15_KI270850v1_alt      5636 40 +    430880 tagttgtttaatttgccagaaaatcttgtttaaagtataa
s panTro4.chr15              79960731 40 +  99548318 tagttgtttaatttgccagaaaatcttgtttaaagtataa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79906438 40 +  99152023 tagttgttaaatttgccacaaaatcttgtttaaagtataa
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22688850 40 - 121039945 tagttgttaaatttgccacaaaatcttgtttaaagtataa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              114629830 33 - 171882078 tagttgttaaatatgccacaaaatcttgtttaa-------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108887897 33 - 162156779 tagtgGTTAAATATGCCACAAAATCTTGTTTAA-------
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4592665 33 +  58131712 tagttgttaaatatgccacaaaatcttgtttaa-------
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58187451 350 +  91889043 I
e rheMac3.chr7              112793544 32 - 170124641 I

a score=470923.000000
s hg38.chr15_KI270850v1_alt      5676 193 +    430880 ttccacaccctactttttaaattattttttgttttgttatgttttgtttttgagataatgtctcactctatcacctaggctggagtgcagtggcatcatcatggctcactgcagcctcgacctcctgggctcaagagagcctcccatctcaacattccaagtagttgggactacaggtgtgcaccatcatgcc
s panTro4.chr15              79960771 193 +  99548318 ttccacaccctactttttaaattattttttgttttgttatgttttgtttttgagataatatctcactctatcacctaggctggagtgcagtggcatcatcatggctcactgcagcctcgaccttctgggctcaagagagcctcccacctcaacattccaagtagctgggactacaggtgtgcaccatcatgcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79906478 193 +  99152023 ttccacaccctactttttaaattattttttgttttgttatgttttgtttttgagataatgtctcactctatcacccaggctggagtgcaatggcgccatcatgactcactgcagcctcgacctcctgggctgaagaaagtctcccacctcagcattccaagtagctgggactgcaggtgtgcaccatcatacc
i ponAbe2.chr15             C 0 I 8
s nomLeu3.chr6               22688890 192 - 121039945 ttccacaccctactttttaaattattttttgttttgttacattttgtttttgagataatgtctcactctgtcacccaggctggagtgcaatggcgccatcatggctcactgcagcctcgacctcctgggctcaagagagcctcccacctcagcattccaag-acctgggactgcaggtgtgcaccatcatgcc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112793576 193 - 170124641 ttccacaccctactttttaaattattttttgttttgttatgttttgttttttagataatgtctcactctgtcacccaggctggagtacaatggtaccatcatggctcactgcagccttgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggactacaggtgtgcaccaccttgcc
i rheMac3.chr7              I 32 C 0
s macFas5.chr7              114629863 193 - 171882078 ttccacaccctactttttaaattattttttgttttgttatgttttgttttttagataatgtctcactctgtcacccaggctggagtacaatggtaccatcatggctcactgcagccttgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggactacaggtgtgcaccaccttgcc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108887930 193 - 162156779 TTCCACAccctactttttaaattattttttgttttgttatgttttgttttttagataatgtctcactctgtcacccaggctggagtacaatggtaccatcatggctcactgcagccttgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggactacaggtgtgcaccaccttgcc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4592698 193 +  58131712 ttccacaccctactttttaaattattttttgttttgttatgttttgttttttagataatgtctcactctgtcacccaggctggagtacgatggtaccatcatggctcactgcagtcttgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggactacaggtgtgcaccaccttgcc
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58187451 350 +  91889043 I

a score=-4498.000000
s hg38.chr15_KI270850v1_alt      5869 40 +    430880 tggctaa----------------------------------------------------ttttgtatgtgtgtgtgtgtgtgtgtgtgtgtg
s panTro4.chr15              79960964 40 +  99548318 tggctaa----------------------------------------------------ttttgtatgtgtgtgtgtgtgtgtgtgtgtgtg
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               22689082 17 - 121039945 tggctaa----------------------------------------------------tttttttttt-----------------------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112793769 21 - 170124641 tggctaa-----------------------------------------------------tatatatatatata------------------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114630056 21 - 171882078 tggctaa-----------------------------------------------------tatatatatatatt------------------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108888123 21 - 162156779 tggctaa-----------------------------------------------------tttttttttttttt------------------
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4592891 74 +  58131712 tggctaattttttttttttttttttttttttttgaaaaaaannnnnnnnnnttatttttttttttttttttttt------------------
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58187451 350 +  91889043 I
e ponAbe2.chr15              79906671  8 +  99152023 I

a score=1134468.000000
s hg38.chr15_KI270850v1_alt      5909 490 +    430880 t--------------ctgtgtagcgacaaggtcccattatgttgcccagttggtcttgaactcctaggctcaagtgatcctccccccttgttctcccaaagttctgggattacaagtatgaacaaccttgcctggtcttaaattattttgataactgtatttcaatataatcaatttccttggtactcctgtgcatt-tatttta-tttattttatttatttttta-tggcagggtctccctctgtcacccaggctggagtgcagtgatgcgatctcggctcactacaacctccacctcccaggttcaagcgattctcctgcctcggtctcctgagtagctgggattacaggcatgtgccaccacgcctggctaatttttgtgtttttagtagagacagggtttcaccatgttggccaagctggtctcaaactcctgacctcaagtgatttgcctgcctcggcctcccaaagtgctaagattacaggcgtgagccaccgggcccaac
s panTro4.chr15              79961004 504 +  99548318 tgtgtgtgtgtgtgtctgtgtagcgacaaggtctcattatgttgcccagttggtcttgaactcctaggctcaagtgatcctccccccttgttctcccagagttctgggattacaaatatgaacaaccatgcctggtcttaaattattttgataactgtatttcaatataatcaatttccttggtactcctgtgcatt-tatttta-tttattttatttatttttta-tggcagggtctcactctgtcgcccaggctggagtgcagtgatgtgatctcggctcactacaacctccacctcccaggttcaagcgattctcctgcctcggtctcctgagtagctgggattacaggcgtgtgccaccacgcctggctaatttttgtgtttttagtagagacggggtttcaccatgttggccaagctggtctcaaactcctgacctcaagtgattcgcctgcctcggcctcccaaagtgctaagattacaggcgtgagccactgtgtccaac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79906679 492 +  99152023 --------------tttttgtagtgacaagttcccattatgttgcccagttggttttgaactcctaggctcaagtgatcctcccacctcgttctcccagagttctgggattacaagtatgaacaaccatgcctggccttaaattattttgatagctgaatttcaatataatcaatttccttgggactcctgtgtattatgttttattttattttatttattttttg-tggcagggtctcactctgtcgcccaggctggagtgcagtgatgcaatctcggctcactacaacctccacctcccgggtttaagcgattctcctgcctcagtctcctgagtagctgggattacaggcattagccaccacgcctggctaacttttgcatttttagtagagatggggtttcactatgttggccaggctggtctcaaactcctgacctcaagtgatttgcctgcctcggcctcccaaagtgctaggattgcaggcttgagccaccatgcccaac
i ponAbe2.chr15             I 8 C 0
s nomLeu3.chr6               22689099 480 - 121039945 --------------tttttgtagcgacaagttcccattatgttgccccgttggtcttgaactcctaggctcaagagatcctcccacctcattcttccaaagttctgggactacaggtatgaacgactatgcctggccttaaattattttgataactgtatttc-----aatcagtttccttggtactcctgcatattttatttta-tttatttt-----tttgttg-tggcagggtctcactctgtcgcccaggctggagtgcagtgatgtggtctcggctcactacaacctccacctcctgggttcaagcgattctcctgcctcagtctcctgagtagctgggattacaggcatgcgccaccaagcctggctaatttttgcatgtttagtagaggtggggtttcactatgttggccaggctggtctcaaactcctgagctcaagtgattcg-ctgcctcggcctcccaaagtgctagtattacaggcgtgagccactgtgcccaac
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112793790 486 - 170124641 --------------tttttgtagcaacaaggtcccattatgttgcccagttggtcttgaactcctaggctcaagtgatcctcccacctcattctcccaaagttctgggattacaggtatgaacaaccatgcctggccttaaattatttggataactatatttcaggataatcaatttccttggtacttctgtg-----tatttta-ttttatttatttattttttg-tggcagggtctcactctgtcacccaggctggagtgcagtgatgcgatctcggctcactacaaccttcacctcccaggttcgagcaattctcctgtctcagtctcctgagtagctgggattacaggcatgcgccaccaagcctggctaatttttgcatttttagtagagacggggtttcactatgttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcctcccaaagtactaggattacaggcgtgagccactgtgcccaac
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114630077 486 - 171882078 --------------tttttgtagcaacaaggtcccattatgttgcccagttggtcttgaactcctaggctcaagtgatcctcccacctcattctcccaaagttctgggattacaggtatgaacaaccatgcctggccttaaattatttggataactatatttcaggataatcaatttccttggtacttctgtg-----tatttta-ttttatttatttattttttg-tggcagggtctcactctgtcacccaggctggagtgcagtgatgcgatctcggctcactacaaccttcacctcccaggttcaagcaattctcctgtctcagtctcctgagtagctgggattacaggcatgcgccaccaagcctggctaatttttgcatttttagtagagacggggtttcactatgttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcctcccaaagtactaggattacaggcgtgagccactgtgcccaac
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108888144 487 - 162156779 --------------tttttgtagcaacaaggtcccattatgttgcccagttggtcttgaactcctaggctcaagtgatcctcccacctcattctcccaaagttctgggattacaggtatgaacaaccatgcctggccttaaattaTTTGGATAACTATATTTCAGTATAATCAATTTCCTTGGTACTTCtgtg-----tatttaa-tttaatttatttattttttgttggcagggtctcactctgtcacccaggctggagtacagtgatgcgatctcggctcactacaaccttcacctcccaggttcaagcaattctcctgtctcagtctcctgagtagctgggattacaggcatgcgccaccaagcctggctaatttttgcatttttagtagagacggggtttcactatgttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcctcccaaagtactaggattacaggcgtgagccactgtgcccaac
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4592965 486 +  58131712 --------------tttttgtagcaacaaggtcccattatgttgcccagttggtcttgaactcctaggctcaagtgatcctcccacctcattctcccaaagttctgggattacaggtatgaacaaccatgcctggccttaaattatttggataactatatttcagtataatcaatttcattggtacttctgtg-----tatttta-tttaatatatttattttttg-tggctgggtctcactctgtcacccaggctggagtgcagtgatgcgatctcggctcactacaaccttcacttcccaggttcaagcaattctcctgtctcagtctcctgagtagctgggattacaggcatgcgccaccaagcctggctaatttttgcatttttagtagagacggtgtttcactatgttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcctcccaaagtactaggattacaggtgtgagccactgtgcccaac
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58187451 350 +  91889043 I

a score=35169.000000
s hg38.chr15_KI270850v1_alt      6399 12 +    430880 cactcctatgta
s panTro4.chr15              79961508 12 +  99548318 cactcctatgta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79907171 12 +  99152023 cactcctgtgta
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22689579 12 - 121039945 cactcctgtgta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112794276 12 - 170124641 cactcctgtgta
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114630563 12 - 171882078 cactcctgtgta
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108888631 12 - 162156779 cactcctgtgta
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4593451 12 +  58131712 cactcctgtgta
i chlSab2.chr26             C 0 C 0
s canFam3.chr3               58187801 12 +  91889043 cactcgtttgca
i canFam3.chr3              I 350 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I

a score=1484181.000000
s hg38.chr15_KI270850v1_alt      6411 557 +    430880 ttttattttctgcatttcaaaatattgttct---gagaaggagtTTGTGG----CAAAAAAGGATAAGAAT-----CCAGG------------CCTTATTGGGAAATCCTAGAG-GACAGAGCAACAGAGAGGGGTTTTTA-AACTGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAACCTT-TCTTTAAATGAATTCTTCCATGTAAAAGAAAGAAACCAGAGCCACTCTGTTGAAGT--GGCAGTTAGGGGCCAGGCAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACACTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTTAAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattcaaccagtggttcaggcactgctaaatgtggagtagctcacctggtttaatcctcacagcagcatcaagagtgtaagtgctgtggttatccacattctacagaGT----------CATTCAACAAATA----CCAAAAAAGGACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAACAAAGA
s panTro4.chr15              79961520 557 +  99548318 ttttattttatgcatttcaaaatattgttct---gagaaggagtTTGTGG----CAAAAAAGGATAAGAAC-----CCAGG------------CCTTATTGGGAAATCCAAGAG-GACAGAGCAACAGAGAGGGGTTTTTA-AACTGCAAGGCCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAACCTT-TCTTTAAATGAATTCTTCCATGTAAAAGAAAGAAACCAGAGCCACTCTGTTGAAGT--GGCAGTTAGGGGCCAGGCAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACACTTGCAGAATGCTCAC----ACACCTGAGAGCACATTTTTAAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattcaaccagtggctcaggcactgctaaatgtggagtagctcacctggtttaatcctcacaacagcatcaagactgtaagtgctgtggttatccacattctacagaGT----------CATTCAACAAATA----CCAAAAAAGGACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAACAAAGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79907183 556 +  99152023 ttttattttacgcatttcaaaacatttttctgaggagaaggagtttgtgg----caaaaaaggataagaat-----ccAGG------------CCTTACTAGGAAATCCAGGAG-GACAGAGCAACAGAGAGGGGTTTTTA-AACTGCAAGGGCCTGAGCAGAGGTCTGACAATTTTTTCCATCCC-TGGAACCTT-TCTTTAAACGAATTATTCCACGTAAAAGAAAGAAACCAGAGATACCCTGTTGAAGT--GGCGGTTAGGGGCCAGGGAGCCCCACTGTGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACACTGGCAGAATGCTCAT----GCACATGAGAGCACCTTTTAAAATCCATCAGGCTA-ATAAT-AATCTTAACAATCataattgccaacatattcaaccagaggctcaggcactgctgaa--gggagtagctcaccaggtttaatcctcacgacagcatcgagagtgtaagtgctgtggttatccgcattctac--agT----------CATTCAACAAATA----CCAAAAAAGGACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAACAAAGT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22689591 557 - 121039945 ttttattttacgcatttcaaaacattgttctgaggagaagGAGTTTGTGG----CAAAAAAGAGTAAGAAT-----CCAGG------------CCTTACTAGGAAATCCAGGAG-GACAGAGCAACAGAGAGGGGTTTTTA-CACTGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAACCTT-TCTTTAAATGAATTCTTCTATGTGAAAGAAAGAAACCAGAGCTACCCTGTTGAAGT--GGCGGTTAGGGGCCAGGGAGCCCCAATGGGGTGGTCTTTCTCTGTCTCCCCAATCCAGGAGGCCTGGAGACACTTGCAGAATGCTCAC-----CACCTGAGAGCACATTTTTAAATCCATCAAGCTa-ataat-agtcataacaatcataattgccatcatattcaaccagtggctcagacactgctaaa--gggagtagctcaccaggtttaatcctcaccacagcatcgagagtgtaagtgctgtggttatccgcattctacagaGT----------CATTCAACAAATA----CCAAAAAAGGACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAACAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112794288 568 - 170124641 ttttatttagtgcatttcaaaacattgttctgaggagaagGAGTTTGTGG----CAAAAAGGGATAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAG-GACAGAGCAACAGAGAGGGGTTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAAGctt-tctttaaatgaattcttgtatataaaagaaagaaaccagagctactctgt--aagt--ggcagttagaggccagggagccccacTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTTCAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagctcaccaggtttaatcctcacaacagcatcgagagtgtaagtgctgtggttatctgcattctacagagtagaaTTTTGGTATTCAACAAATA----CCAAAAAAGGACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAACAAAGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114630575 568 - 171882078 ttttatttactgcatttcaaaacattgttctgaggagaagGAGTTTGTGG----CAAAAAGGGATAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAG-GACAGAGCAACAGAGAGGGGTTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAAGCTT-TCTTTAAATGAATTCTTGTATATAAAAGAAAGAAACCAGAGCTACTCTGT--AAGT--GGCAGTTAGGGGCCAGGGAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTTCAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagctcaccaggtttaatcctcacaacagcatcgagagtgtaagtgctgtggttatctgcattctacagagtagaaTTTTGGTATTCAACAAATA----CCAAAAAAGGACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAACAAAGA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108888643 570 - 162156779 ttttatttactgcATTTCAAAACATTGTTCTGAGGAGAAGGAGTTTGTGG----CAAAAAGGGATAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAG-GACAGAGCAACAGAGAGGGATTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAAGCTT-TCTTTAAATGAATTCttgtatataaaagaaagaaaccagagctACTCTGTTGAAGT--GGCAGTTAGGGGCCAGGGAGCCCCACTGGGGTGgcctttctctgtctccccattCCAGGAGGCTTGGAGACATTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTTCAATCCATCAGGCta-ataat-aatcataacaatCATAACTGCCATCATATTCCACCAGTGGCTCAGGCACTGCTAAATGTGGAGTAGCTCACCtggtttaatcctcacaacagcatCGAGAGTGTAAGTGCTGTGGTTATCTGCATTCTACAGAGTAGAATTTTGGTATTCAACAAATA----CCAAAAAAGGACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAACAAAGA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4593463 570 +  58131712 ttttatttactgcatttcaaaacattgttctgaggagaagGAGTTTGTGG----CAAAAAGGGATAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAG-GACAGAGCAACAGAGAGGGGTTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAAGCTT-TCTTTAAATGAATTCTTGTATATAAAAGAAAGAAACCAGAGCTACTCTGTTGAAGT--GGCAGTTAGGGGCCAGGGAGCCCCACTGGGGTGGTCTTTGTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGTTCAC----GCACCTGAGAGCACATTTTTCAATCCATCAGGCTa-ataat-aatcatagcaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagctcaccgggtttaatcttcacaacagcatcgagagtgtaagtgctatggttatctgcattctacagagtagaaTTTTGGTATTCAACAAATA----CCAAAAAAGGACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAACAAAGA
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  90168672 548 + 124595110 ttgtatcttaggcatgtacaaatggttttct---aaaaagcaatgcatggAAAACAAACAAAGAGACAAATAAACACCATGAAGAATGTTTTTCCTTCCTGGAAAATCTAAGAGTGATGG------AGAGAGTGATTTCCA-ACCCCTCAGGGCTTAAGCTGAGGTCTTCAGGCTTTCTCTGGCTCATAAGCTCTT-GCTTCACAGGGACTCTT-----TCAAAGAAAGAAGTCAAAGGTGCTCCACTGAGACAGGGTAGAGAGACACCAGAGGGCCCCATCTAGATGGTTCT------CCTCCCTAACCCAGGAGGGCAATGGATATGTGCATATCCCACAG----GCATCTGCGGACACAC-------CCCACCAGGCTA-GTAAC-AATCCCAATAA-------TGTCTGCTGAGT---CTAGTGGGCCAGGCGCTGCTGTGTGTCT-GTGGCTTAGTGTGATCAGCCCTCAGAAGAGCCCCTGAAATGTACGTTCTGCTGTTATTC-CATTCTACAcatt----------cattcaacaaacatttcctgaaagacaactgtgttctaaacg-------------------cctctagcactta-aatccgtcaacaaaca
i mm10.chr9                 I 960 C 0
s canFam3.chr3               58187813 509 +  91889043 ttttatcttatgcattcgagaatgtcattct---gagaagggctccTCAA----CGAAAGAGGTTAGTTAA-------GAG------------TCTTGC-------TCTGAGAA-GAC------TCTGAGAGGGATTCTAACAGCCTCCAGGGCCTGAGCACAGGGCTGCAGGTTTTGTCCAGGCC-TAGAACCTTCTCTTCAAATGGACCCTTGCATGTAACACAAATAACCCAGAGTTGCTCAGCTGGAGT--G-------GGGGCC------TCACATCTGGATGGTCCTTCTCAATCTCCCAGGGGCAGGACACCTA----------------CCCCACCGTGGACCCTGAGAGCACATTTAAAAATCCACCAGGCTATACAGTCCACCCTAATAATCATAATGGCCCACACGCGCGGTCAGCAAGCCGTGCACTGCCGTGGGTGGATGGGCTC------TTT--------------CACTAAGAGCACAAG-----CAATTATCCCCATTCTACAGATC-------TGATATT-------TC----TCGAGAAACTGCCAAGTCTTAACTACCTAGAGCGCTAaggcactgttctgacaggtagagtct-tcaacaaaga
i canFam3.chr3              C 0 I 594
e calJac3.chr10             113717393 2792 - 132174527 I

a score=25556.000000
s hg38.chr15_KI270850v1_alt      6968 8 +    430880 ATATAAAG
s panTro4.chr15              79962077 8 +  99548318 ATATAAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79907739 8 +  99152023 ATATAAAG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22690148 8 - 121039945 ATATAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112794856 8 - 170124641 ATATAAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114631143 8 - 171882078 ATATAAAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108889213 8 - 162156779 ATATAaag
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4594033 8 +  58131712 ATATAAAG
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  90169220 8 + 124595110 atatgaag
i mm10.chr9                 C 0 I 1388
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I

a score=287125.000000
s hg38.chr15_KI270850v1_alt      6976 120 +    430880 ggccaagtgtcgtggctcacacatgtaatcccagcactttaggaggctgaggtgggaggattgcttgaggccaggagttcaagaccagcctgggcaacatagcaagactcccatctccac
s panTro4.chr15              79962085 120 +  99548318 ggccaagtgtggtggctcacacctgtaatcccagcactttaggaagctgaggtgggaggattgcttgaggccaggagttcaagaccagcctgggcaacatagcaagactcccatctccac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79907747 120 +  99152023 ggccaagtgtggtggctcacacctgtaatcccaacactttaggaggctgaagtgggtggattgcttgaggccaggagttcaagaccagcctgggaaacatagcgagactcccatctctac
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22690156 120 - 121039945 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggattgcttgaggccaggggttcgagaccagcccgggcaacatagcaaaactcccatctctac
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112794864 120 - 170124641 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgagaccagcctgggcaacatagcaaaactcccatctctac
i rheMac3.chr7              C 0 I 23
s macFas5.chr7              114631151 120 - 171882078 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgagaccagcctgggcaacatagcaaaactcccatctctac
i macFas5.chr7              C 0 I 11
s papAnu2.chr7              108889221 120 - 162156779 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgagaccagcctgggcaacataccaaaactcccatctctac
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4594041 120 +  58131712 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgagaccagcctgggcaacatagcaaaactcccatctctac
i chlSab2.chr26             C 0 I 8
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I

a score=15603.000000
s hg38.chr15_KI270850v1_alt      7096 21 +    430880 a----------cacacacaaaaaAATTATCC
s panTro4.chr15              79962205 14 +  99548318 a-----------------aaaaaAATTATCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79907867 29 +  99152023 a--aaaaaaaaaaaaaAAAAAAAAATTATCC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22690276 31 - 121039945 aaaaaaaaaaaaaaaaaaaaaaaaaTTATCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              114631282 21 - 171882078 ----------aaaaaaaaaaaaaaaTTAATC
i macFas5.chr7              I 11 C 0
s papAnu2.chr7              108889341 19 - 162156779 ------------caaaaaaaaaaaattaatc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4594169 21 +  58131712 ----------aaaaaaaaAAAAAAATTAATC
i chlSab2.chr26             I 8 C 0
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e rheMac3.chr7              112794984 23 - 170124641 I

a score=608337.000000
s hg38.chr15_KI270850v1_alt      7117 302 +    430880 AGgaccagctgcagtggctcacacctgtaatcccagcactttgggaggccgaggtagaaggatcacttgagcccaggagtttgtttgagaccagcctgggcaacatagtgagaccccatctctattttaaaaaaactaaaaataaaaacatattagccaagtgtggtggcacccacctgtagtcccagtccctccctacttgggaggctgagatgggaggatggcttgagctcaggagttggaggctgcaga------------------------------------------------------------gacctatgattgcacacctgcactcctgtctgggcgacagaccaagaccc
s panTro4.chr15              79962219 302 +  99548318 AGgaccagctgcagtggctcacacctgtaatcccagcactttgggaggccgaggtagaagggtcacttgagcccaggagtttgtttgagaccagcctgggcaacatagtgagaccccatctctattttaaaaaaactaaaaataaaaacatattagccaagtgtggtggcacccacctgtagtcccagtccctccctacttgggaggctgagatgggaggatggctcgagctcaggagttggaggctgcaga------------------------------------------------------------gacctatgattgcacacctgcactcctgtctgggcgacagaccaagaccc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79907896 299 +  99152023 AGggccagctgccgtggctcacacatgtaatcccagcactttgggaggccgaggtagaaggattactggagtccaggagtttgtttgagaccaacctgggcaacatagtgagatcccatctcta--ttaaaaaaactaaaagtaaaaaaa-attagccaagtgtggtggcacccacctgtagtcccagtccctccctacttaggaggctgagatgggaggatggctccagctcaggagttggaggctgcagt------------------------------------------------------------gagctatgattgcacacctgcactcctgtctgggcaacagaccaagaccc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22690307 293 - 121039945 AGggccagcctcggtgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggatcacttgagcctcggagtttgtttgagaccagcctgggtaacatagtgagatcccatctcta--ttaaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccacctgtagtcccag-------ctacttgggaggctgagatgggaggatggctcgagctcaggagttggaggctgcagt------------------------------------------------------------gagctatgattgcccacctgcactcctgtctgggtgacagagcaagaccc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112795007 273 - 170124641 attaccagccttgatgcctcacacctgtaatcccagcactatgggagactgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctcta--ttaaaaaaattaaaaataaaaaaaAATTAgccaagtgtggtggcacccacctgtagtccca-------gctatttgggaggctgagatggaagga------------------------------tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--------------------------------------------------
i rheMac3.chr7              I 23 I 49
s macFas5.chr7              114631303 300 - 171882078 AGggccagccttgatgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctcta--ttaaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggaggctgcagt------------------------------------------------------------gagctatgattgcacacctgcactcctgtctgggtgacagagcaagacgc
i macFas5.chr7              C 0 I 4
s papAnu2.chr7              108889360 300 - 162156779 agggcCAGCCTtgatgcctcacacctgtaatcccagcgctatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctcta--ttaaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggaggctgcagt------------------------------------------------------------gagctatgattgcacacctgcactcctgtctgggtgacagagcaagaccc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4594190 299 +  58131712 AGggccagccttgatgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctcta--ttaaaaaaattaaaaat-aaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggaggctgcagt------------------------------------------------------------gagctatgattgcacacctgcactcctgtctaggtgacagagcaagaccc
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I

a score=11219.000000
s hg38.chr15_KI270850v1_alt      7419 18 +    430880 tgtttccaaaaaagctg----g
s panTro4.chr15              79962521 18 +  99548318 cgtttccaaaaaaGCTG----G
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79908195 18 +  99152023 tgtttccaaaaaaCATG----G
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22690600 22 - 121039945 catttcaaaaaaaaaGGGGGAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              114631607 18 - 171882078 ttttaaaaaaaaaaaaa----a
i macFas5.chr7              I 4 I 1
s papAnu2.chr7              108889660 18 - 162156779 tattaaaaaaaaaaaaa----a
i papAnu2.chr7              C 0 I 2
s chlSab2.chr26               4594489 18 +  58131712 tatttcaaaaaaaaaaa----a
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e rheMac3.chr7              112795280 49 - 170124641 I

a score=593809.000000
s hg38.chr15_KI270850v1_alt      7437 248 +    430880 gggcaaagaatataaagatttttgccttcctagactacattgggaggggagggagaaaacaaataaatagaaaaaataatgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaataaagcaaggaagagggatacggagagccagggagttgcaattttaaaataaagtcattataggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtggtttagccac
s panTro4.chr15              79962539 248 +  99548318 GGGcaaagaatataaagatttttgccttcctagactacattgggaggggagggagaaaacaaataaatagaaaaaataatgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaataaagcaaggaagagggatacggagagccagggagttgcaattttaaaataaagtcattataggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtggtttagccac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79908213 247 +  99152023 GGGAAAAGAATATaaagtttctcgccttcctagactacattgggaggggagggagaaaacaaataaatagaaagaataatgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaat-aagcagggaagggggatagggagagccagggagttgcaattttaaaataaagtcattagaggaggcctcattgagaaggagacatttaagcaagaacacaaaagtgagtggtttagccac
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22690622 246 - 121039945 GGGCaaaaaatat--agactcttgccttcctagactgcactgggagggaagggagaaaacaaataaatagaaaaaataatgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaataaagcaaggaagggggaaagagagagccagggaattgcaattttaaaataaagtcattagaggaggcctcattgagaaggagacatttgagcaagaacccaaaagtgaatggtttagccac
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112795329 246 - 170124641 GTGCAAAGAatat--agattcttgccttcctagactacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaagcaaggaagggggatagggagagccagggagttgcaattttaaaataaagtcattagaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i rheMac3.chr7              I 49 C 0
s macFas5.chr7              114631626 246 - 171882078 gtgcaaagaatat--agattcttgccttcctagactacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaagcaaggaagggggatagggagagccagggagttgcaattttaaaataaagtcattagaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i macFas5.chr7              I 1 C 0
s papAnu2.chr7              108889680 246 - 162156779 gtgcaaagaaTAT--AGATTCTTGCCTTCCTAGACTACATTGAGAGGGgtgcaagaaaacaaataaatagaaaaaatactgaaaatgctAAGTGATATGGTATGTCAGAAGTGCTATGgggaaaaacaaagcaaggaaggggGATAGGGAGAGCCAGGGagttgcaattttaaaataaagtcattagaGGAGGCCTCATTGAGAAGGAGACATTTGAGCAAGAACTCAAGAGTGAGTGCTTTAGCCAC
i papAnu2.chr7              I 2 C 0
s chlSab2.chr26               4594507 246 +  58131712 gtgcaaagaatat--agattcttgccttcctagactacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaagcaaggaagggggatagggagagccagggagttgcaattttaaaataaagtcattagaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I

a score=825309.000000
s hg38.chr15_KI270850v1_alt      7685 342 +    430880 gtggaaaacagagggaagagtgttgcaggtgtagggaacagcaatgcaaaatcctgaagcagcagcatgtctggcctgtggaggaactgcaaggaggccagtgggcggagtggagggaactaagaaggtgtagctggaaatgagattggacaggtcaccttgcctagcgtctcatacaggcca------gaactttgtcttttgctc-gagtgagatgggcaccattgcaggattttgagcagag-aaggaccatgatcaggctggttttgaatga----ctctggctgctatat-----tgaaaacatgaggggaggggcacctggggtaggcaatagtggaaacagagagacctgtt-----
s panTro4.chr15              79962787 342 +  99548318 gtggaaaacagagagaagagtattgcaggtgtagggaagagcaatgcaaaatcctgaagcaggagcatgtctggcctgtggaggaactgcaaggaggccagtgggcggagtggagggaactaagaaggtgtagctggaaatgagattggacaggtcaccttgcctagcgtctcatacaggcca------gaactttgtcttttgctc-gagtgagatgggcgccattgcaggattttgagcagag-aaggaccatgatcaggctggttttgaatga----ctctggctgctatat-----tgaaaacatgaggggaggggcacctggggtaggcaatagtggaaacagggagacctgtt-----
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79908460 320 +  99152023 gtggaaaacagacagaagagtgttccaggtgtagggaacagcaatgcaaaatcctgaagcaggagcatgtctggcctgtggaggaactgcaaggaggccagtgggcggagtggagggaactaaggctgtgtagctggaaatgagattggagaggtcaccttgcctaaggcctcatacaggcca------gaactttgtcttttgctctgagtgagatgggctccattgcaggattctgagcagag-taggaccatgatt---------------------------ctgctatat-----tgaaaacaggaggggaggggcacctggggtaagcaatagtggaaacagggagacctgtt-----
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22690868 347 - 121039945 gtggaaaacagagagaagagtgttccaggtgtagggaacagcaatgcaaaatcctgaagcagga-catgtctggcctgtggaggaactgcaaggaggccagtgggtggagtggagggaactaaggcggtgtagctggaaatgagattggagaggttaccttgcctagggcctcacacaggcca------gaactttgtcttttgctc----tgagatgggcgccattgcaggattttcagcagag-taagacgatgatcgcgctggttttgaatgaatctttctggctgctttcccttcgtgaaaacacgaggggaggggcacctggggtaggcaatagtgaaaacagagagacctgtt-----
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112795575 336 - 170124641 gtggaaaacagagagaagagtgttcccggtgtagggaacatcaatgcaaaatcctgaagcaggagcatgtctggcctgtggaggaactgcaaggaggccagtgggcggagtggagggaactaaggcggtgtagctggaaatgagactggagaggttaccttgcctagggcctcgtataggcca------gaactttgtcttttgctc--catgagatgggcaccattgcaggattttgagcagag-taagaccatgattgcgctggttttgaatgaatctttctggcttctatat-----tgaaaacacgaggggaggggcacctggggtaggc---------aacagagagacctgtt-----
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114631872 345 - 171882078 gtggaaaacagagagaagagtgttccaggtgtagggaacatcaatgcaaaatcctgaagcaggagcatgtctggcctgtggaggaactgcaaggaggccagtgggcggagtggagggaactaaggcggtgtagctggaaatgagactggagaggttaccttgcctagggcctcgtataggcca------gaactttgtcttttgctc--catgagatgggcaccattgcaggattttgagcagag-taagaccatgattgcgctggttttgaatgaatctttctggcttctatat-----tgaaaacacgaggggaggggcacctggggtaggcaatagttgaaacagagagacctgtt-----
i macFas5.chr7              C 0 I 3766
s papAnu2.chr7              108889926 345 - 162156779 GtggaaaacagagagaagagTGTTTCAGGTGTAGGgaacatcaatgcaaaatccTGAAGCAGGAGCATGTCTGGCCTGTGGAGGAACTGCAAGGAGGCCAGTGGGCGGAGTGGAGGGAACTCAGGCGGTGTAGCTGGAAATGAGACTGGAGAGGTTACCTTGCCTAGGGCCTCATATAGGCCA------GAACTTTGTCTTTTGCTC--CGTGAGATGGGCACCATTACAGGATTTTGAGCAGAG-TAAGACCATGATCGCGCTGGTTTTGAATGTATCTTTCTGGCTTCTATAT-----TGAAAACACGAGGGGAGGGGCACCTGGGGTAGGCAATAGTTGAAACAGAGAGACCTGTT-----
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4594753 345 +  58131712 gtggaaaacagagagaagagtgttccaggtgtagggaacatcaatgcaaaatcctgaagcaggagcatgtctggcctgtggaggaactgcaaggaggccagtgggcggagtggagggaactaaggcggtgtagttggaaatgagactggagaggttaccttgcctagggcctcatataggcca------gaactttgtcttttgctc--cgtgagatgggcacgattgtaggattttgagcagag-taagaccatgatcgcgctggttttgaatgaatctttctggcttctatat-----tgaaaacacgaggggaggggcacctggggtaggcaatagttgaaacagagagacctgtt-----
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  90170616 312 + 124595110 GTGGAAGATAgagggtaggttgtt-cacacacagggaacaacaatgcaaaa-cctgaggtggggacacatctggcttgctgagtaacatctc-gaggctgggaggtctagcagaggga-------------agttggagatgagattggagagacctccttgcctagggcctcatgt--gccactgatggaatattgcactgcactctaagtgggatgggggtagccgcagtgtcataggcacagttaagatcatggct-------------------ccttctggttgctatgt-----tgaaatgagttgataaaggactcctgatgt----------ttaagcccggagattagatgggtt
i mm10.chr9                 I 1388 C 0
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I

a score=317391.000000
s hg38.chr15_KI270850v1_alt      8027 120 +    430880 aagaagttaccgcagcaatccaggccgggca-gcagtggctcacgcctgtaattccagcactttgggaggctgaggccagcatatcccctgagctcaggaatctgagaccagcctggctaa
s panTro4.chr15              79963129 119 +  99548318 aagaagttaccgcagcaatccaggctgggc--gcagtggctcacgcctgtaattccagcactttgggaggccgaggccagcatatcccctgagctcaggaatctgagaccagcctggctaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79908780 119 +  99152023 aagaagttaccgcagcaatccaggcagggc--gcagtggctcacgcctgtaattccagcactttgggaggccgaggcgagcttatcacctgagttcaggagtttgagaccagcctggccaa
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22691215 119 - 121039945 aagaagttaccgcagcaatccaggccgggc--gcagtggctgacgcctgtaattgctacactttaggaggctgaggcgagcatatcacctgagttcaggagtttgaggccagcctggccaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112795911 121 - 170124641 aagaagttaccgcagcaatccaggccgggcgcgcagtagctcgcgcctgtaattccagcactttgggaggccgaagagagcgtatcgcctgcgttcaggagctgcagacaagcgcggtcaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              114635983 121 - 171882078 AAGAAGTTACCGCAGCAATCCAggccgggcgcgcagtagctcgcgcctgtaattccagcactttgggaggccgaagagagcgtatcgcctgagttcaggagcttgagaccagcctggtcaa
i macFas5.chr7              I 3766 N 0
s papAnu2.chr7              108890271 121 - 162156779 AAGAAGTTACCGCAgcaatccaggccgggcgcgcagtggctcgcgcctgtaattccagcactttgggaggccgaagcgagcgtattgcctgagttcaggagcttgagaccagcctggtcaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4595098 121 +  58131712 aagaagttaccgcagcaatccaggccgggcgcgcagtggctcgcgcctgtaattccagcactttgggaggccgaagcgagcgtatcgcctgagttcaggagcttgagaccagcctggtcaa
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             113720185 119 - 132174527 AAGAAGTTGCCGTAGCAATTTACGCCTAAT--gcagtggctcacacctgtaatttcaacactctgggaggctgacatgagtgtatcacctgagttcaggagtttgagaccagcctggccaa
i calJac3.chr10             I 2792 C 0
s mm10.chr9                  90170928  60 + 124595110 caggagttactgtaggagttcagat-------ggagaaactgaggcatggaat---------------------------------------------ga---tgagac------agcaaa
i mm10.chr9                 C 0 C 0
e canFam3.chr3               58188322 594 +  91889043 I

a score=204229.000000
s hg38.chr15_KI270850v1_alt      8147 78 +    430880 catggtgaaatcctgtgtccactaaaaatacaaaaattagctgggcgtggtggtgcgtgcttctagtcccagctactc
s panTro4.chr15              79963248 78 +  99548318 catggtgaaatcctgtgtccactaaaaatacaaaaattagctgggcgtggtggtgcgtgcttctagtcccagctactc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79908899 78 +  99152023 tatggtgaaatcctgtgttcactaaaaatacaaaaagtagctgggcgtgctggcgtgtgcctgtagtcccagctactc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22691334 78 - 121039945 catggtgaaatcctgtgtctgctaaaaatacaaaaaatagctgggcgtggtcgcgtgtgcctgtagtcccagctactc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112796032 78 - 170124641 catggtgaaatcctgtgtctactaaaaatacaaaaaatagctgggcgtggtcgcgtgtgactgtagtcccagctactc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61579836 50 + 171882078 cgtggtgaaatcctgtgtccactaaaaatacaaaaattagctgggtgtgg----------------------------
i macFas5.chr7              N 0 C 0
s papAnu2.chr7              108890392 78 - 162156779 catggtgaaatcctgtgtctactaaaaatacaaaaaatagctgggcgtggccgcgtgtgactgtagtcccagctactc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               4595219 78 +  58131712 catggtgaaatcctgtgtctactaaaaatacaaaaaatagctgggcgtggtcgcgtgtgactgtagtcccagctactc
i chlSab2.chr26             C 0 N 0
s calJac3.chr10             113720304 76 - 132174527 catggcgaaatc--gtctctactaaaaatacaaaacttacctgggcgtggtggcaagtgcctgtagtcccagctactt
i calJac3.chr10             C 0 I 6
s mm10.chr9                  90170988 61 + 124595110 gatggtaaaa-------------aAGCATGGGAAA---agccgggcgtggtggcgcacgcctttaatcctagc-actc
i mm10.chr9                 C 0 C 0
e canFam3.chr3               58188322 594 +  91889043 I

a score=328672.000000
s hg38.chr15_KI270850v1_alt      8225 139 +    430880 ------ctgaggtgg-------gagaatcgctcaaacccaggaggcggaggttccagtgggccgagatcgcgccac-gcactc-----tagcctgggcgacagagcgaga----ctatctca--------aaacaaccaacca----------------aaaa-CCCAAAATACAAacaacaacaac
s panTro4.chr15              79963326 140 +  99548318 ------ctgaggtgg-------gagaatcgctcaaacccaggaggcggaggttccagtgggccgagatcgcgccac-gcactc-----tagcctgggcgacagagcgaaa----ctatctca--------aaacaaccaacca----------------aaaaaCCCAAAATACAAACAACAACAAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79908977 143 +  99152023 ------cggaggctgagagcaagagaatcgcttgaacccaggaggcagaggttgcagagacctgagatggcgccac-acactc-----tagcctgggcgacagagcgaga----ttgtctca--------aaacaaacaaaca----------------aaaaaCCCAAAAC----ACAACGACAAC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22691412 140 - 121039945 ------ctgaggcag-------gagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcgcgccac-gcactc-----cagcccgggcgacagagcgaga----ctgtctca--------aaacaaacaaaca----------------aaaaaCCCAAAACACAAACAACAACAAC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112796110 144 - 170124641 ------ctgaggcag-------gagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcgcaccac-gcactc-----cagccccggcgacagagcgaga----ttgtctca----aaacaaacaaacaaaca----------------aaaaaCCCCAAACCCAAACAACAACAAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61579886 137 + 171882078 ------ctgaggcag-------gagaatccctcgaacccaggaggtggaagttgcagtgagccgagatcgtgccac-gcactc-----tagcctgggcgacagaacgaga----ctgtctca--------aaacaagcaaaca----------------aaaaTCCCAAAACACA---AACAACAAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108890470 148 - 162156779 ------ctgaggcag-------gagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcgcaccac-gcactc-----cagcccgggcgacagagcgaga----ttgtctcaaaacaaacaaacaaacaaaca----------------aaaaaccccaaacacaaacaacaacaac
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1307999 137 +  24206276 ------ctgaggcag-------gagaatccctcgaacccaggaggtggaggttgcagtgagccgagatcgtgccac-gcactc-----tagcctgggcgacagagcgaga----ctgtctca--------aaacaagcaaaca----------------aaaaTCCCAAAACACA---AACAACAAC
i chlSab2.chr29             N 0 C 0
s calJac3.chr10             113720386 116 - 132174527 ------ctgaggcag-------gagagtggcttgaacccaggagatggaggctgcagtgagccaagatcgcgtcactgcactc-----cagcctgggtgacagag-gagagactctgtctca--------acac--------------------------------------------aacaacagc
i calJac3.chr10             I 6 C 0
s mm10.chr9                  90171049 151 + 124595110 aggaggcagaggcag-------gcggatttct---------------gagtttgagaccagcctggtctacagagt-gagttccaggacagccagggctacacagagaaa--acccgcctca--------aaaaaatcaaaCAACCCAACCTTCCCCCTAAAAACAACAAACAAACAAAACACC---
i mm10.chr9                 C 0 I 150
e canFam3.chr3               58188322 594 +  91889043 I

a score=205631.000000
s hg38.chr15_KI270850v1_alt      8364 71 +    430880 aa---aaggagttactgcaacaatccagatggagaaactgaggcacggaaagatgaaatagcagagttagtaga
s panTro4.chr15              79963466 74 +  99548318 AACAAAAGGAGTTACTGCAACAATCcagatggagaaactgaggcacggaaagatgaaatagcagagttagtaga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79909120 71 +  99152023 AA---ACGAAGTTACTGCAGCGATCcagatggagaaactgaggcacggaaagatgaaatagcagagttagtaga
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22691552 66 - 121039945 AA--------ATTACTGCAACGATCcagatggagaaactgaggcacggaaagatgaaatagcagagttagtaga
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112796254 71 - 170124641 AA---AATAAGTTACTGCAACGATCcagatggagaaactgaggcacggaaagatgaaatggcaaagttagtaga
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61580023 70 + 171882078 AA---AAGAAGTTACTGCAACGATCcagatggagaaactgagacacggaaaggtgaaa-agcagagttagtaga
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108890618 71 - 162156779 aa---aataagttaCTGCAACGAtccagatggagaaactgaggcacggaaaGATGAAATGGCAAAGTTAGTAGA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1308136 70 +  24206276 AA---AAGAAGTTACTGCAACGATCcagatggagaaactgaggcacggaaagatgaaa-agcagagttagtaga
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113720502 71 - 132174527 aa---aagaaGttactgcaactatccagatggagaaactgaggcacggaaagatgaaatagcggagttagtaga
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90171200 150 + 124595110 I
e canFam3.chr3               58188322 594 +  91889043 I

a score=354076.000000
s hg38.chr15_KI270850v1_alt      8435 120 +    430880 tagcccagcgagg-atttgaatccagatactctgactccagcagccccctcttggccg-ctCCCCTCTGGTCCCTGGCCACCAGCAAGGACCC-CGGTCTGCCCTGGGCCTA-AGGCCTTTGTG
s panTro4.chr15              79963540 120 +  99548318 tagcccagcgagg-atttgaatccagatactctgactccagcagccccctcttggccg-ctCCCTTCTGGTCCCCGGCCACCAGCAAGGACCC-GGGTCTGCCCTGGGCCTA-AGGCCTTTGTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79909191 119 +  99152023 tagcccagcgagg-atttgaacccagatactctgactccagcagccccctcttggccg-ctCCCTTCTGGTCCCCGGCCACCAGCAAGGACCT-GGGTCTGCCCTGGGCCT--AGGCGTTTGTG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22691618 118 - 121039945 tagcccagcgagg-atttgaatccatatactctgactccagcagccccctcttggccg-ctCCCTTCTGGTCCCCGGCCACCAGCAAAGATCC-GGGTCTGCCCTGGGCCTA-GGG--GTTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112796325 119 - 170124641 tagcccagggagg-atttgaatccagatactctgactccagcagccccctcttggccg-ctTCCTTCTTGTCTCCGGCCACCAGCAAGAACCC-GGGTCTGCCCTGGGCTT--AGGCGTTTGTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61580093 119 + 171882078 cagcacagcgagg-atttgaatccggatactctgactccagcagccccctcttggccg-ctccactctggtccccGGTCACCAGCAAGGACCC-GGGTCTGCCCTGGGCCT--AGGCGTTTGTG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108890689 119 - 162156779 TAGCCCAGggagg-atttgaatccagatacTCTGACTCCAGCAGCCCCCTCTTGGCCA-CTCCCTTCTTGTCTCCGGCCACCAGCAAGGACCC-GGGTCTGCCCTGGGCTT--AGACGTTTGTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1308206 119 +  24206276 cagcacagcgagg-atttgaatccggatactctgactccagcagccccctcttggccg-ctccactctggtccccGGTCACCAACAAGGACCC-GGGTCTGCCCTGGGCCT--AGGCGTTTGTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113720573 116 - 132174527 cagcccagggagg-atttgaatccagatactctgactccagccgccccctcctggccg-c-----tctgGTCCCTGGCCATCGGCAAGGACCT-GGGTCTGGCTTGGGCCTCTAGGCATTCGTG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90171350 108 + 124595110 tagcCATGATAGGAATTTGCATCTAAGTATCCT----------GCCATCTCTTAGCTGACCCTTCTCTAGTTTCTGGTGATCGGCTAAAACCCTGAGTCTGCCTTGGACCT--GAA----TGTT
i mm10.chr9                 I 150 C 0
e canFam3.chr3               58188322 594 +  91889043 I

a score=2121996.000000
s hg38.chr15_KI270850v1_alt      8555 602 +    430880 GTTCCCTCCCTGCAGGAAGTGTAACCGAGGGCCGGGCGGCACCGGATATCGTGCACCAGGTTCGCGTGGACGCTGGGGGGTCCTTCCTGTCCT--GTGAGCTGCGGCCCCGCGCACTGCGCAAGCGGG-ATGTATCTGTGCGCCGAGACGCGCCCGCCTTCTACCCGCTGCAATACCGCAGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGATGCCGCGGCGCGGCGCCCTGGGTCGCGCGCACATCCGGGCCCACACCCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACTCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGAGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGT-gggatgtggagattggctctagccttgccacgcacttgtctggtggctttgcccagtgcactttttctctgccagcctcggtattcacgcctgtaaag----tgggagtgacaacgcaggcctcgttcatctcTAGGACAACAGTTCTCAAAGTTTAATGTGAAagccgggtggt----ggtgcacctgtagtcc
s panTro4.chr15              79963660 598 +  99548318 GTTCCCTCCCTGCAGGACGTGTAACCGAGGGCCTGGCGGCACCGGATATCGTGCACCAGGTTCGCGTGGACGCTGGGGGGTCCTTCCTGTCCT--GTGAGCTGCGGCCCCGCGCACTGCGCAAGCGGG-ATGTGCCTGCGCCCCGAA---CGTCC-CCTTCTACCAGCTGCAATACCGCAGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGATGCCGCGGCGCGGCGGCCTGGGTCGCGCGCACATCCGGGCCCACACCCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACTCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGT-gggatgtggagattggctctagccttgccacgcacttgtctggtggctttgcccagtgcactttttctctgccagcctcggtattcacgcctgtaaag----tgggagtgacaacgcaggcctccttcatctcTAGGACAACAGTTCTCAAAGTTTAATGTGAAAGCTGggtggt----ggtgcacctgtagtcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79909310 566 +  99152023 GTTCTCTCCCTGCAGGACGTGCAACTGAGAGCCAGGCGGCACTGGACATCGTGCACCCGGTTTGTGCCGACGTGGGGGTCTCCTTCCTGTCCTACACGAGCTGCGGCCCAGCGCACTGCGCAAGCAGG-GTATGTCTGTGCACCGAGATGCGCCCGCCTT----------CAATATCGCAGGCGCGAGCTGCGCTTCAACCTCACCGCCAATCAGCACCTGCTGGCGCAGGGTTTTGTGAGCGAGACGAGGCAGCGAGGAGGCCTGGGTCGCGCGCACATCCGGGCCCACACCCCCGTCTGCCACCTGCTCGGCGAGGTACAGGACCCTGAGCTCCAGGATGGCCTGGCGGCCATTAGCGCCTGCGACGGCCCGGTGAGTGCGCTGGGAAATGTATACTTGGGGCAGTCTCGGGTGGT-gggatgtggagactggttctagccttgccacgcacttgtctggtggctttgtccagtgcacttttcctctgccagcctcggtattcacgcctttaa--------------------------------aTCTCTAGGACAGCAGTTCTCAAAGTTTAATGTGAAAgccgggtggt----ggtgcacctgtagtcc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22691736 602 - 121039945 GTTCTCTCCCTGCAGGACGTGCAACCGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTCGACGCGGGGGGCTCCTTCCTGTCCT--ACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACGAGCTACAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGACGCGGCGGCGCGGCGGCCTGGGTCGCACGCACATCCGGGCCCACAGCCCGGCCTGCCATCTGCTTGGCGAGGTGCAGGACCCTGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGT-GGgatgtggatattggctctaaccttgccacgcacttgtctggtggctttgcccagtacactttttctctgccagcctcggtattcacgcctgtaaag----tgggagtgacaacgcaggcctcgttgatttcTAGGACAACGGTTCTCAAAGTTTAATGTGAAAgccgggtggt----ggtgcacctgtagtcc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112796444 601 - 170124641 GTTCTCTCCCTGCAGGACGTGCAACTGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTTGACGCGGGGGGCTCCTTCCTGTCCT--ACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACCAGCTGCAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGACGCGGCGGCGCGGAGGCCTGGGTCGTGCGCACATCCAGGCCCACACCCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGT-gggatgtggagattggctccagtcttgccatgcacttgtctggtggctttgcccagggcacttttcctctgccagcctcggtattcacgcctgtaaag----ggggagtgacaacgcaggcctcgttgatctcTGGGACAGCACTTCTCAAAGTTTAATGTG-AAgccgggtggt----ggtgcacctgtagtcc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61580212 603 + 171882078 GTTCTCTCCCTGCAGGACGTGCAACCAAGGCCAGGGAGGCACTGGACATCGTGCACCAGGTTCGCGTGGACCCCTGGGGGTCCTTCCTGTCCT--GTGAGCTGTGGCCCCGCACGCTGCGCAAGCGGGAATGTGTCTGTGCGCCTAGACGCGCCCTCCTTCTACCAGCTGCAATACTGCGGCTGCGAGCTGCGCTTCAACCTGACCTCCAATCAACACCTGCTGGCGCCCGGCTTTGTGAGTGAGACACTGAGGCTTGGCGGCCTGGGTCGCGGGCACATCTGGGCCCACACCCCCGCCTGCCATCTGCTTGGGGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCCACCAGCGGCTGCAACAGCCTGTTGAGTGCACTGGGACATGTATACTCGGGGCAGTCTCGGGTGGT-gggatgtggagattggctccagcctggccacgcacttgtctggtggctttgcccagtgcacttttcctctgccagcctcggtattcacgcctgtaaaa----tgggagcgacaatgcatgcctggttgatctctaggacagcagttctcaaagtttaatgtgaaagccgggtggt----ggtgcacctgtagtcc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108890808 603 - 162156779 GTTCTCTCCCTGCAGGACGTGCAACTGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTTGACGCGGGGGGCTCCTTCCTGTCCT--ACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACCAGCTGCAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGACGCGGCGGCGCGGAGGCCTGGGTCGTGCACACATCCAGGCCCACAACCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGTGGGGATGTGGAGATTGGCTCCAGTCTTGCCGTGCACTTGTCTGGTGGCTTTGCCCAGGGCACTTTTCCTCTGCCAGCCTCGGTATTCACGCCTGTGAAG----TGGGAGTGACAACGCAGGCCTCGTTGATCTTTGGGACAGCACTTCTCAAAGTTTAATGTGAAAGCCAGGTGgt----ggtgcacctatagtcc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1308325 603 +  24206276 GTTCTCTCCCTGCAGGACGTGCAACCAAGGCCAGGGCGGCACTGGACATCATGCACCAGGTTCGCGTGGACCCCTGGGGGTCCTTCCTGTCCT--GTGAGCTGTGGCCCCGCACGCTGCGCAAGCGGGAATGTGTCTGTGCGCCCAGACGCGCCCTCCTTCTACCAGCTGCAATACTGCGGCTGAGAGCTGCGCTTCAACCTGACCTCCAATCAACACCTGCTGGCGCCCGGCTTTGTGAGTGAGACACTGAGGCTTGGCGGCCTGGGTCGCGGGCACATCTGGGCCCACACCCCCGCCTGCCATCTGCTTGGGGAGGTGCAGGACCCGGAGCTCGAGGGTGGCCTGGCGGCCACCAGCGCCTGCAACAGCCTGTTGAGTGCACTGGGACATGTATACTCGGGGCAGTCTCGGGTGGT-gggatgtggagattggctccagcctggccacgcacttgtctggtggctttgcccagtgcacttttcctctgccagcctcggtattcacgcctgtaaaa----tgggagcgacaatgcaggcctcgttgatctctaggACAGCAGTTCTCAAAGTTTAACGTGAAAGCCGggtggt----agtgcacctgtagtcc
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113720689 602 - 132174527 GTTCTCTCCCTGCAGGGCGTGCAACGGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTGGACGCGGGGGGCTCCTTCCTGTCCT--ACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATCTGTCTGGGCACCGCGACGCGCCCGCCTTCTACCAGCTACAGTACCGCGGGCGTGAGCTGCTCTTCAACCTGACCGCCAATCCGCACCTGCTGGCCCCCGGCTTTGTGAGCGAGACGCGGCGGCGCGGCGGCCTGGGACGCGCGCACATCCAGGCTCACAGCTCCGCCTGCCACCTGCTCGGCGAGGTGCAGGACCCGGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCTACGGCCTGGTGAGTGCGCTGGGACGTGAGTACTCGGGGCAGTCTCGCGTGGT-GGGATGTGGAGAGGGGCTTTTgccttgccacgcacttgtctggtggcttggcccagtgcacttctcctctgccagcctcggtattcacgcctgtaaaa----tgggagtgacagcgcaggccccgttgatctctaggacagcagttctgaaagtttaatatgaAAGCCGCgtggc----tgtgcacctgtagtcc
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90171458 558 + 124595110 ACTTTCTCTCTGCAGGTCTTGTGACTGAGGGCCGGGCGGGTTTGGACATCGTGCACCCGGTGCGAGTGGATGCTGGAGGCTCCTTCCTGTCCT--ATGAGCTGTGGCCACGGGTGCTGCGCAAGCGCG-ATGTGTCCACCACGCAGGCTTCGTCTGCTTTCTACCAGCTGCAGTACCAAGGGCGGGAACTGCTTTTCAACTTGACCACCAACCCTTATCTGATGGCTCCCGGCTTTGTGAGTGAGATTCGACGTCACAGCACTTTAGGCCATGCGCACATCCAAACCAGTGTCCCAACCTGCCATTTGCTTGGTGATGTCCAGGACCCGGAGCTGGAAGGAGGCTTTGCAGCCATTAGCGCCTGCGATGGCCTAGTGAGTTTTCTGGGA----TGCTCGTGGGGAGGGCTGGGGT--T-GGTGTAACAACATTGACTC-----------------TGTCTGATGGCTTTGCTCAGTATACCTTTCCTGTGTCA-CCTCTGTGTTCA------TAAAGGAGACAGAAATGACAGTGTAGACTTCCTTGTTCTGAAGGACA---------------------GAAAACTGGAAGGTTTTCGGTGCTCCAG-AATcc
i mm10.chr9                 C 0 I 122
s canFam3.chr3               58188916 465 +  91889043 GCCCTCTCCCCGCAGGCCGCGACGTGGATGGCCGCGTGGCGCTGGACGTCGTGCACCCCGTGCGCGTGGACGCGGGGGGCTCCTTCCTGTCCT--ATGAGCTGTGGCCGCGCGCACTGCGCAAGCGGG-ACGGGTCCGCACCCCGCGCTGCACCGACCTTCTACGAGCTGCAGTACCGCGGGCGCGAGCTGCGCTTCAACCTGACGGCCAACAGGCACCTGCTGGCGCCCGGCTACGTGAGTGAGACGCGGCGGCGCGGCGACCTGGGGAGCACACACATCCATGCCCAGGCGCCCGCCTGCCACCTGCTCGGCGAGGTGCAGGACCCGGAGCTGGAGGGCGGCCTGGCGGCCATCAGCGCCTGCGACGGGCTGGTGAGTGCCCCG-------CACCCCAGGGGA---CTCACGGAGC-GGGGTGGGGGG-------------------TGCAGCTGTACGGTGG--------------------------------------------------------GGGG----------------TTCCTGTCCCCCAGGGTGGCAGTCTTCGA--------------------------------------------
i canFam3.chr3              I 594 C 0

a score=369194.000000
s hg38.chr15_KI270850v1_alt      9157 208 +    430880 cagctatttgggaggctgaggcgaaaggatcacttgagcccaggagttaaaggatgtaggacgtagggtgtgatcatggcgcttagctggagacacag-cgagaccccaggcactaaaaaaaaaaaaa-aaaaagaaagaaagaaAGAGAAAAGAAAAGAaaagtttaatatgagctcaaat--cacctgcaggccctgtttaaacagaatt
s panTro4.chr15              79964258 199 +  99548318 cagctatttgggaggctgaggcgaaaggatcacttgagcccaggagttaaaggatgtaggacgtagggtgtgatcatggcgcttagctggagacacag-cgagaccccaggcactaaaaaaaaaaaaa----------gaaagaaagagaaaaGAAAAGAaaagtttaatatgagctcaaat--cacctgcaggccctgtttaaacagaatt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79909876 183 +  99152023 cagctatttgggacgctgaagtgaaaggatcacttgagcccaggagttcaaggat-------gtggggtgtgatgatggcgcttagctggagacacag-cgagaccccaggcactctccaaaaaaaaa-------------------aaaaaaaaaaaaaaaaGTTGAATATGAGCTTAaat--cacctgcaggccctgtttaaacagaatt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22692338 202 - 121039945 cagctatttgggaggctgaggcgaaaggatcacttgagcccaggagttcaaggat-------gtagggtgtgatgattgcgcttagctggagacacag-ccagaccctaggcactctcaaaaaaagaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaaaagtttaatatgagctcaaat--cacctgcaggccctgtttaaacagaatt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112797045 183 - 170124641 cagctacttgggaggctgaggcgaaaggatcacttgagcccaggagttca-------aggatgtagggtgtgatgatagagcttagctggtgatacag-ccagaccctaggcactaaaaaagaagaag-aagaaga------------------aaaaaaaaGAtttactatgagctcaaat--cacatgcaggccctgtttaaacataatg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61580815 208 + 171882078 cacttattcggaaggctgaggccaaaggatcacttgagcccaggagttcaaggatgtaggatgtagggtgtaatgatggcgctcagttggagacacag-cgagaccccagacactcaaaaaaaaaaaa-aaaaaaaaTGAAAGAAAGAGAAAAGAAAAGAaaagtttactatgagctcaaat--cacctgcaggccctgtttaaacagaatg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108891411 188 - 162156779 cagctacttgggaggctgaggcgaaaggatcacttgagcccaggagttca-------aggatgtaGGGTGTGATGATAGAGCTTAGCTGGTGATACAG-CCAGACCCTAggcactaaaaaagaaaaaa-aaaaaaa-------------aaaaaaaaaaaaagatttactatGAGCTCAAAT--CACCTGCAGGCCCTGTTTAAACAGAATG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1308928 205 +  24206276 cacttatttggaaggctgaggccaaaggatcacttgagcccaggagttcaaggatgtaggatgtagggtgtgatgatggcgctcagttggagacacag-cgagaccccaggcactcaaaaaaaaaaaa-aaaaatg---aaagaaagagaaaAGAAAAGATAAGTTTACTATAAGCTcaaat--cacctgcagtccctgtttaaacagaatg
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113721291 155 - 132174527 cagctatttgggagg------------------------ccaggagttggaggat-------GTAAGGTGTGACGATTGCACTTCGCTGGAGACACAGTTGAGACCCCAGGCACTCTCAAaataataa--------------------taatagtaataa------taatGTGAGCTCAAATACAGCCTGCAGGCCCTGTTTAAACAGAATT
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58189381  35 +  91889043 -------------------------------ACTTGAG-CCAGAAGCAC----------------GCTTGTTAACACTGTGCT---------------------------------------------------------------------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90172016 122 + 124595110 I

a score=38887.000000
s hg38.chr15_KI270850v1_alt      9365 13 +    430880 tttgcagggtagg-----
s panTro4.chr15              79964457 13 +  99548318 tttgcaggatagg-----
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79910059 13 +  99152023 tttgcagggtagg-----
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22692540 13 - 121039945 tttgcaggatagg-----
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112797228 13 - 170124641 tttgcagggtagg-----
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61581023 13 + 171882078 tttgcagggtagg-----
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108891599 13 - 162156779 TTTGCAGGGTAGG-----
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1309133 13 +  24206276 tttgcagggtagg-----
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113721446 13 - 132174527 TTTGCAGGGAAGG-----
i calJac3.chr10             C 0 M 1066
s mm10.chr9                  90172138 13 + 124595110 tttgtttgtttgt-----
i mm10.chr9                 I 122 C 0
s canFam3.chr3               58189416 13 +  91889043 -----AGGATGGGGTGGG
i canFam3.chr3              C 0 C 0

a score=204853.000000
s hg38.chr15_KI270850v1_alt      9378 72 +    430880 tctggaatggcgcccaaacacttggatttctgaaaacgtctcaggtaatattgaagatgcaggtccagagat
s panTro4.chr15              79964470 72 +  99548318 tctgggatggcgcccaaacacttggatttctgaaaacatctcaggtaatattgaagatgcaggtccagagat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79910072 72 +  99152023 tctgggatagcgcccaaacacttggatttctgaaaacgtctcaggtaatattgaagacgcaggtccagagat
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22692553 72 - 121039945 tctgggatagcgcccaaacacttggatttctgaaaacgtctcaggtaatattgaagatgcaggtccagagat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112797241 72 - 170124641 tctggggtggcgcccaaacacttggatttctgaaaccgtctcaggtaatattgaagatgcaggtccagagat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61581036 72 + 171882078 tctggggtggcacccaaacacttggatttctgaaaccatctcaggtaatgttgaagatgcaggtccagagat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108891612 72 - 162156779 TCTGGGGTGGCGCCCAAACACTTGGATTTCTGAAACCGTCTCAGGTAATATTGAAGATGCAGGTCCAGAGAT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1309146 72 +  24206276 tctggggtggcacccaaacacttggatttctgaaaccatctcaggtaatgttgaagatgcaggtccagagat
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  90172151 66 + 124595110 ttTGGGAT------CCAATTCTTGAAGTTCTGAAAATGTCCTGGGTAGGAAGGAAGCTGCTACCCCAGAGAC
i mm10.chr9                 C 0 I 16
s canFam3.chr3               58189429 61 +  91889043 -------TGATGCTCCCAGGCCAGCATCTCTGAGCGTTTCCCAG----TGTGGAAGTTGCAGGTGCAGAGAG
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113721459 1066 - 132174527 M

a score=6039302.000000
s hg38.chr15_KI270850v1_alt      9450 1848 +    430880 cccattttgagaacctctgTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGACTTCTCTTCCT-TGGG--GCATCAGTTATGACTGT-TCCTTCACA----GGTC-------CCTTTAGGCT---GCTTTTC--TCCAGG--AAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--CCTCTGCTCGGATCAGAGCTCCGGGAAAAGCAGGCCTCAGCTTCCTGGTTTCGACTGGCTGAAGGGTGGTGCTGGCTACTGC----AGCCCTAATTGCTCC---CTGATTGGGTGCTGATTAGAGCAGCTTCCACTCCAGGCAGAGTAGGGCCCCTTTCTGTTCGTGTTCAGGTGACCAGCCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGG-------ATGTGTGCACACTC------TCAG-------CGTCCACTGTTCCCAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCCGCACAGGGCCTAATGACAGGGCAGCCCACAACGCAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCCCTGCACAGTATTCCCATTTATGGAGCctgtgcctgtcccttaatgtacaattgatcttgttgagcctgtgccacagctgtgcacatggggcatcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccaggctcacctagtcattcagtgagtggtgggcgggagggggggacttcgcattcatacccaggtctccagacccaagagctgatgcactctccaGCCCTCCCTCCAGGCCCCctggtcctgtgtgactcaaggggcagaattggtgcctatgaggggaagtccgagggatgtaa---aACCTTCTTTCCTGTTGGAGCCCTGAGCTTCCTCAGGAGGTAGTGGGCA--TCATAGATGCTTCCTGGGGCCCCTCCCCTCCCTGGACTCTGAATGTT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCCTTCTCTGGGCAGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCGTGGGCATCTCCGCCACTCGGGTGTGGGTGTGGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAGG--GAAGGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-GCTGGAAATGGCTGGCCTGCAGAGAAGACGCAGAATAGCCTGGAGGCCTGGGCACAAGCTGCCCTGCTCAGGACAGCTGTCTGGGACTTTG--GAAGACACCATTTTGTCAGATTTGGGTGCAGACCCGTTTTCCTCTCCTAATAGGGtgggtgtgtggg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagctccgctttgaag-gtttggctgtgtgtgaaatggcagagaagggctttccagatggaggctacagagtgagcaaaggcccagcaggcggaaagtgca--gggtgtctgtgggcagtcacagatgatgtgggcagtgggggctcagctgagcaggatgggcc---tctgggacgtgcaggaagagcagctgagggccagCCCTCCCTGTGTGACCCTGGTGCTTCTTCCCTAGAAAGGTGTGTTCCTGCTCTCCAACAAGGACTACTTCATTCAGCCCCTGGACGGTGCccca-----gcctggcccagccatgcccagcccCATGTGGTGTACAAGCATCCGGCCCCGGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGTACCTGTGGGGTGCAAGGTATG--CTCTTCTACTCCCAGTTCTCAGGCAGGTGCTA--GGCCTGGGG---ACATGAAGG-----GGCCTTTCTAGAAGCCCCTC---GTAACATGCCCATGCTCGGTGTCCCTTAGACCAGA
s panTro4.chr15              79964542 1852 +  99548318 cccattttgagaaccTCCGTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGACTTCTCTTCCT-TGGG--GCATCAGTTATGACTGT-TCCTTCACA----GGTC-------CCTTTAGGCT---GCTTTTC--TCCAGG--AAAGCCACCCCTCACCCTGTAGCCATTATGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--CCTCTGCTCGAATCAGAACTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTCGCCTGGCTGAAGGGTGGTGCTGGCTACTGCCTGCAGCCCTAATTGCTCC---CTGATTGGGTGCTGATTAGAGCAGCTTCCACTCCAGGCAGAGTAGGGCCCCTTTCTGTTCGTGTTCAGGTGACCAGCCCCACTCTCCTAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGG-------ATGTGTGCACACTC------TCAG-------CATCCACTGTTCCCAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCGTGGGCTGTGGCCGCACAGGGCTTAATGACAGGGCAGCCCACAACACAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCCCTGCACAGTATTCTCATTTATGGAGCctgtgcctgtcccttaatgtacaattgatcttgttgagcctgtgcagcagctgtgcacatggggcatcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccagggtcacctagtcattcagtgagtggtgggcaggagggggggactccgcattcatacccaggtctccagacccaagagctgatgcactctccaGCCCTCCCTCCAGGCCCCCTGGtcctgtgtgacccaaggggcagaattggtgcctatgaggggaagtccgagggacgtaa---aACCTTCTTCCCTGTTGGAGCCCTGAGCTTCCTCAGGAGGTAGTGGGCA--TCAAAGATGCTTCCCAGGGCCCCTCCCCTCCCTGGACTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCCTTCTCTGGGCAGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCGTGGGCATCTCTGCCACTCGGGTGTGGGTGTGGATGCTTTTGGAGTGATTCATTGCCTTAGGAAGATAGAGG--GAAGGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-GCTGGAAATGGCTGGCCTGCAGAGAAGACGCAGAATAGCCTGGAGGCCTGGGCACAAGCTGCCCTGCTCAGGACGGCTGTCTGGGACTTTG--GAAGACACCATTTTGTCAGATTTGGATGCAGACCCGTTTTCCTCTCCTAATGGGGTGGGTGTGTGgg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagctccactttgaag-gtttggctgtgtgtgaaatggcagagaagggctttccagatggaggctacagagtgagcaaaggcccagcaggcagaaaatgca--gggtgtctgtggGCAGTCACAGATGATGTGGGCAGTGGGGGCTCAGCTGAGCAGGATGGGCC---TCTGGGACGTGCAGGAAGAGCAGCTGAGGGCCAGCCCTCCCTGTGTGACCCTGGTGCTTCTTCCCTAGAAAGGTGTGTTCCTGCTCTCCAACAAGGACTACTTCATTCAGCCCCTGGACGATGCCCCA-----GCCTGGCCCAGCCATGCCCAGCCCCATGTGGTGTACAAGCATCCGGCCCCGGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGTACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCAGGCAAGTGCTA--AGCCTGGGG---ACATGAAGG-----GGCCTTTCTAGAAGCCCCTC---GTAACATGCCCATGCTCGGTGTCCCTTAGACCAGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79910144 1850 +  99152023 cccattttgagaacctctgTTTGACTGGACTAAGTAACTGAAAAACCAGTTGACTTCTCTTCTT-TGGG--GCATCAGTTATGACTGT-TCCTTCACA----GGTC-------CCTTTAGGCT---GCTCTTC--TCCAGG--AAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--CCTCGGCCCGGATCAGAGCTCCGGGAAAAGCAGCCCTCAGCTTCCTGGCTTCCTCTGGCTGAAGGGTGGTGCTGGCTACTGCCTGCAGCCCTAATTGCTCC---CTGATTGGGTGCTGATTAGAGCAGCTTCCACTCCAGGCAGAGTAGGGCCCCTTTCTGTTCGTGTTCAGGTGACCAGCCCGACTCTCCCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGG-------ATGTGTGCACACTC------TCAG-------CGTCCACTGTTCCCAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATAGGCTGTGGCTGCACAGTGCCTAATGACAGGGCATCCCACAACACAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCCCTGCACAGTATTCTCATTTATGGAGCctgtgcctgtcccttaatgtacaattgatcttgttgagcctgtgcagcagctgtgcacatgggacatcattcccatttcagagatgaggaaacaggctcagaggggaacttgcccagggtcacccagtcattcagtgagtggtgggcgggagggggtgactccgcattcatacccaggtccccagacccaagagctgatgcactctccaGCCCTCCCTCCAGG-CCCCTGGtcctgtgtgacccaaggggcagaattggtgcctatgaggggaagtccgagggacgtaa---aACCTTCTTCCCTGTTAGAGCCCTGAGCTTCCTCAGGAGGTAGTGGGCA--TCAGAGATGCTTCGCAGGGCCCCTCCACTCCCTGGACTCTGAATGCT-GGTGGACATGTCCAAGACACTCCTGCCAGCTTCCCTTCTCTGGGCAGCCTGGGGCTCAGAGAACAGGGTGTCCTGGTGGCTGTGGGCATCTCCTCTGCTCGGGTGTGGGTGTGGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAGG--GAAGGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-GCTGGAAACGGCTGGCATGCAGAGAAGATGCAGAATAGCCTGGAGGCCTGGGCACAAGCTGCCCCACTCAGGACGGCTGTCTGGGACTTTG--GAAGACACCATTTTGTCAGATTTGGATGCAGATCCATTTTCCTCTCCTAATGGGGTGGCTGTGTGgg-----------------------gcagcatc--cccaggggtg------gaggcttct-----------gagctctgctttgaag-gtttggctgtgtgtgaaatggcagagaagggc-ttccagatggaggctacagagtgagcaaaggcccagcaggaggaaagtgca--gtgtgtccgtgagcagtcacaggtggtgtgggcagagggggcTCAGTTGAGCAGGATGGGCC---TCTGGGACGTGCAGGAAGAGCAGCTGAGCACCAGCCCTCCCTGTGTGACCCTGGTGCTTCTTCCCCAGAAAGGTGTGTTCCTACTCTCCAACAAGGACTACTTCATTGAGCCCCTGGACGGTGCCCCA-----ACCTGGCCCGGCCATGCCCAGCCCCATGTGGTGTACAAGCGTCAGGCCCCAGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGATGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGCAGATGCTG--GGCCTGGGG---ACATGAAGG-----GGCCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCTCAGTGTCCCTTAGACCAGA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22692625 1849 - 121039945 cccattttgagaaccTCCGTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGACTTCTCTTCCT-TGGG--GCATCAGTTATGACTGT-TCCTTCATA----GGTC-------CCTTTAGGCT---GCTCTTC--TCCAGG--AAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--CCTCTGCTCGGATCGGAACTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTCCTCTGGCTGAAGGGTGGTGCTGGCTACTGCCTGCAGCCCTAATTGCTCC---CTGATTGGGTGCTGATTAGAGCAGCTTCCACTCCAGGCAGAGTAGGGCCCCTTTCTCTTCGTGTTCAGGTGACCAGCCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGAGAGGAGTAGGGT-------ATGTGTGCACACTC------TCAG-------CGTCCACTGTTCCCAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCCGCACAGGGCCTAATGACAGGGCAGCCCACAACACAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCCCTGCACAGTATTCTCATTTATGGAGCctgtgcctgtcccttaatgtacaattgatcttgttgagcctgtgcagcagctgtgcacatggggcatcattcccatttcacagatgaggaaacaggctcagaggggaccttgcccagggtcacctagtcattcagtgagtggtgggcgggagggggggactccgcattcatacccaggtctccagacccaagagcagatgtactctccaGCCCTCCCTCCAGGCTCCctggtcctgtgtgacccaaggggcagaattggtgcctatgaggggaaatccgagggaCATAA---AACCTTCTTCCCTGTTGGAGCCCTGAGCTTCCTCAGGAGGTAGTGGGCA--TCAAAGATGCTTCCCAGGGCCCCTCCCCTCCCTGGACTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCCTTCTCTGGGCAGTCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCGTGGGCATCTCCTCCGCTCGGGTGTGGGTGTGGATGCTTTGGGAGTGATTCATTGCCTTAGGGAGATAGAGG--GAAGGTCAGAAGCACTGGCCAGCTGGGAGGGAGCACAGT-GCTGGAAATGGCTGGCATGCAGAAGAGATGGAGAATAGCCTAGAGGGCTGGGCAGAAGCTGCCCCGCTCAGGATGGCTGTCTGGGACT------AAGACACCGTTTTGTCAGATTTGGATGTAGACACATTTCCCTCTCCTAATGGGGTGGGTGTGTGGG-----------------------GCAGCATC--CCCAGGGATG------GATGCTtct-----------gagctccgctttgaag-gtttggctttgtgtgaaatggcagagaagggctttccagatggaggctacagagtgagcaaaggcccagcaggaggaaagtgca--gtgtgtccgtggGCAGTCACAGGTGGTGTGGACAGTGGGGGCTCAGCTGAGCAGGATGGGCC---TCTGGGACATCCAAGAAGAGCAGCTGAGGGCCAGCCCTCCCTGTGTGACCCTGGTGCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAACGAGGACTACTTCATTGAGCCCCTGGATGGTGCcccg-----gcccggcctggccacgcccagcccCATGTGGTGTACAAGCGTCAGGCCCCAGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGCACCTGTGGAGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTTGGGTGGGTGCTG--GGCCTGGGG---ACATGAAGG-----GGCCTTTCTAGAAGCCCCCCT--TTAACATCCCCATGCCCAGTGCGCCTTAGACCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112797313 1841 - 170124641 cccactttgagaaacTCTCTTTGACTGGACTAAGTAACCGAAAAAGCAATTGGCTTCTCTTCCC-TGGG--GCATCAGTTATGACTGT-TCCTTCACA----GGTC-------CCTTTAGGCT---GCTCTTC--TCCAGG--AAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCGCTTTCAGCC--CCTCTGCCCCGATCAGCGTTCCAGGAAAAGCAGGCCTCAGCTTCCTGGCTTCGTCTGGCTGAAGGGTGGTGCTGGCTACTGCCTGCAGCCCTAATGGCTCC---CTGACTGGG-GCTGATTAGAGCAGCTTCCACTCCAGGCGGGGCAGGGCCCCTTTCTGTTCGTGTTCAGGTGACCAGCCCCATTCTCTCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGG-------ATGTGTGCACACTC------TCAG-------CGTCCACTGTTCCCAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCGTGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCACAACATAAGCTGCACAACAACTGGACCTTTGAAGGCCCATCTGCCCTGCACAGTATTCTCATTTATGGAGCCTGTGCCTGTCCCTTAATGTACAGTTGATGTTGTTGAGCCTGAGCAGCAGCTGTGCACACGGAGCGtcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccagggtcacctagtcattcagtgagtggtgggtgggagggggggactccgcattcatacccaggtctccagacccaagagctgatgcactctccaGCCCTCCTTCCAGGCTCCCTGGTCCTGTGTGACCCAAGGGGCAGAATTGGTGCCTACGAGGGGAACTCCGAGGCACGTAA---GACCTTCTTCCCTGTTGGAGCCCTGAGCTTCCTCAGGAGGTAGTGGGCA--TCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGATTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCCTTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGGGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTCATTGCCTTAGGGAGATAGAGG--GAAGGTCAGAAGCCCTGGCCATGTGGGAGGGAGCACAGT-GCTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCCTGGAGGCCTGGACACAAGCTTTCCTGCTCAGGATAGCTGTCTGAGACTCTG--GAAGACACCATTTTGTCAGATTGGGATGCAGACCCATTTCCCTCTCCTAATGGGGTGGGTGTGTGGG-----------------------GCAGCATC--CCCAGGGGCG------GAGGCTTCT-----------GAGCTTCACTTTGAAG-GTTTGGCTGTgtgtgaaat---------gggctttccaggtggaggctacagagtgtgcaaaggcccagtgggatgaaagtgCA--GAGTGTCCGTGGGCAGTCACAGGTGGTATGGGCAGTGGGGGCTCAGCTGGACAGGACGGGTC---TCTGGGACATGCAGGAAGAACAGCTGAGGGCCAGCCCTCCCTGTGTGACCCTAGTGCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGATGGTGCCCCG-----GCCCGGCCTGGCCACGCCCAGCCCCATGTGGTGTACAAGCGTCAGGTCCCGGAGAGGTTGGCACAATGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAATTCTCGGGTGGGTGCTG--GGCCTGGGG---ACATGAAGG-----GGCCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCCAGTGCCCCTTAGACCAGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61581108 1792 + 171882078 cccactttgagaacctctgTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGGCTTCTCTTCCC-TGGG--GCATCAGTTGTGACTGT-TCCTTCACA----GGTC-------CCTTTAGGCT---GCTCTTC--TCCAGG--AAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCGCTTTCAGCC--CCTCTGCCCGGATCAGCGTTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTGGTCTGGCTGAAGGGTGGTGCTGGCTACTGCCTGCAGCCCTAATGGCTCC---CTGACTGGG-GCTGATTAGAGCAGCTTCCACTCCAGGCAGAGCAGGGCCCCTTTCTGTTTGTGTTCAGGTGACCAGCCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGG-------ATGTGTGCACACTC------TCAG-------CGTCCACTGTTCCCAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCGTGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCA-AATACAAGCTGCACAACATCTGGACCTTTGAAGGCCCATCTGCCCTGCACAGTATTCTCATTTATGGAGCCTGTGCCTGTCCCTTAATGTACAGTTGATGTTGttgaacctaagcagcacctgtgcacacagggcatcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccggggtcacctagtcattcagtgactggtgggtggaaggggggcactccaaattcatacccaggtctccagaccgaagagctgatgcactctccaGCCCTCCCTCCAGGCTCCCTGGTCCTGTGTGACCCAAGTAGCAGAATTGGTGCCTACAAGGGGAAGTCCGAGGCACGTAA---GACCTTCTTCCCTGTTGGAGCCCTGAGCTTCCTCAGGAGGTAGTGGGCA--TCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGATTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCCTTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGGGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTTGTTCCCTTAGGGAGATAGAGG--GAAGGTCAGAAGCCCTGGCCATGTGGGAGGGAGCACAGT-GCTGGAAATGGCTGGCATGCAGAGGAAATGGAGAATAGCCTGGAGGCCTGGGCACAAGCCTCCCCACTCAGGATGGCTGTCTAGGACTCTG--GAAGACAGCATTTTGTCAGATT--------------------------------------------------------------------------------------TG------GAGCCTtct-----------gagctctgctttgaag-gtttggctgtatgtgaaatggcagagaagggctttccaggtgcaggctacagagtgtgcaaaggcccagcgggaggaaagtgca--gagtgtctgtggGCAGTCACAGGTGGTGTGGGCAGTGGGGACTCAGCTGGGCAGGATGGGCC---TCTGGGACGTGCAGGAAGAGCAGCTGAGGGCCAGTCCTCCCTGTGTGACCCTGGTGCTTCTTCCCCAGGAAGGTGTGTTCTAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGACGCTGCcccggcccagcccggcccagccacgcccag-cccaTGTGGTGTACAAGCATCAGGCCCCGGAGAGGCTGGCACAGTGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGATGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGG---ACATGAAGG-----GGCCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCCAGTGCCCCTTAGACCAGA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108891684 1844 - 162156779 CTCACTTTGAGAAACTCTCTTTGACTGGACTAAGTAACCGAAAAAGCAGTTGGCTTCTCTTCCC-TGGG--GCATCAGTTATGACTGT-TCCTTCACA----GGTC-------CCTTTAGGCT---GCTCTTC--TCCAGG--AAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--CCTCTGCCCGGATCAGCCTTCCGGGAAAAgcaggcctcagcttcctggctTGGTCTGGCTGAAGGGTGGTGCTGGCTACTGCCTGCAGCCCTAATGGCTCC---CTGTCTGGG-GCTGATTAGAGCAGCTTCCATTCCAGGCGGAGCAGGGCCCCTTTCTGTTCGTGTTCAGGTGACCAGCCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGG-------ATGTGCGCACACTC------TCAG-------CGTCCACTGTTCCCAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCACAACATAAGCTGCACAACATCTGGACCTTTGAAGGCCCATCTACCCTGCACAGTATTCTCATTTATGGAGCCTGTGCCTGTCCCTTAATGTACAGTTGATGTTGTTGAGCCTGAGCAGCAGCTGTGCACACGGAGCgtcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccagggtcacctaGTCATTCAGTGAgtggtgggtgggggggggggactCTGCATTCATACCCAGGTCCCCAGACCCAAGAGCTGATGCACTCTCCAGCCCTCCCTCCAGGCTCCCTGGTCCTGTGTGACCCAAGGGGCAGAATTGGTGCCTACGAGGGGAAGTCCGAGACACGTAAGACGACCTTCTTCCCTGTTGGAGCCCTGAGCTTCCTTAGGAGGTAGTGGGCA--TCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGATTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTACCAGCTTCCCTTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGGGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTCATTGCCTTAGGGAGATAGAGG--GAAGGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-GCTGGAAATGGCTGGCATGCAGAGGAGATATAGAATAGCCTGGAGGCCTGGACACAAGCTGCCCTGCTCAGGATAGCTGTCTGAGACTCTG--GAAGACACCATTTTGTCAGATTGGGATGCAGACCCATTTCCCTCTCCTAATGGGGTGGGTGTGTGGG-----------------------GCAGCATC--CCCAGGGGCG------GAGGCTTCT-----------GAGCTTCACTTTGAAG-GTTTGGCTGTGTGTGAAAT---------GGGCTTTCCAGGTGGAGGCTACAGAGTGTGCAAAGGCCCAGTGGGATGAAAGTGCA--GAGTGTCTGTGGGCAGTCACAGGTGGTGTGGGCAGTGGGGGCTCAGCTGGACAGGACGGGTC---TCTGGGACATGCAGGAAGAACAGCTGAGGGCCAGCCCTCCCTGTGTGACCCTAGTGCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGATGGTGCCCCG-----GCCCGGTCTGGCCACGCCCAGCCCCATGTGGTGTACAAGCGTCAGGTCCCAGAGAGGTTGGCACAATGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGG---ACATGAAGG-----GGCCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCCAGTGCCCCTTAGACCAGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1309218 1792 +  24206276 cccactttgagaacctctCTTTGACTGGACTAAGTAACCGAAAAAGCAGTTGGCTTCTCTTCCC-TGGG--GCATCAGTTGTGACTGT-TCCTTCACA----GGTC-------CCTTTAGGCT---GCTCTTC--TCCAGG--AAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCGCTTTCAGCC--CCTCTGCCCAGATCAGCGTTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTGGTCTGGCTGAAGGGTGGTGCTGGCTACTGCCTGCAGCCCTAATGGCTCC---CTGACTGGG-GCTGATTAGAGCAGCTTCCACTCCAGGCGGAGCAGGGCCCCTTTCTGTTCGTGTTCAGGTGACCAACCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGG-------ATGTGTGCACACTC------TCAG-------CGTCCACTGTTCCCAGGA-GGTCCTCAGCTTAGATTGCTCAGGCAAAAACTGTGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCA-AATACAAGCTGCACAACATCTGGACCTTTGAAGGCCCATCTGCCCTGCACAGTATTCTCATTTATGGAGCCTGTGCCTGTCCCTTAATGTACAGTTGATGTTGttgaacctaagcagcacctgtgcacacagggcatcattcccatttcacagatgaggaaacaggctcagaggggatcttgcccggggtcacctagtcattcagtgactggtgggtggaaggggggcactccacattcatatccaggtctccagaccgaagagctgatgcactctccaGCCCTCCCTCCAGGCTCCCTGGTCCTGTGTGACCCAAGTAGCAGAATTAGTGCCTACGAGGGGAAGTCCGAGGCACGTAA---GACCTTCTTCCCTGTTGGAGCCCTGAGCTTCCTCAGGAGGTAGTGGGCA--TCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGATTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCCTTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGAGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTTGTTCCCTTAGGGAGATAGAGG--GAAGGTCAGAAGCCCTGGCCATGTGGGAGGGAGCACAGT-GCTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCCTGGAGGCCTGGGCACAAGCCTCCCCACTCAGGATGGCTGTCTAGGACTCTG--GAAGACAGCATTTTGTCAGATT--------------------------------------------------------------------------------------TG------GAGCCTtct-----------gagctctgctttgaag-gtttggctgtatgtgaaatggcagagaagggctttccaggtgcaggctacagagtgtgcaaaggcccagagggaggaaagtgca--gagtgtccgtgggcagtcacaggtggtgtgggcagtgggggctcagctgggcaggatgggCC---TCTGGGACGTGCAGGAAGAGCAGCTGAGGGCCAGTCCTCCCTGGGTGACCCTGGTGCTTCTTCCCCAGGAAGGTGTGTTCTAGCTCTCCAATGAGGACTACTTCATTGAGCccctcgccgctgccctggcccggcccggcccagccacgcccag-cccgTGTGGTGTACAAGCATCAGGCCCCGGAGAGGCTGGCACAGTGGGGAGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGG---ACATGAAGG-----GGCCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCCAGTGCTCCTTAGACCAGG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113722561 1785 - 132174527 CCCACTTTGAGAAGATCTGTTTGACTGGACTAAGCAACTGAAAAAGCAGTTGATTTCTCTTTTTGGGGG--GCATCTGTTATGACTGT-TCCTTGACA----GATC-------CCTTTAGGCT---GCTCTT-----CAGG--AAAGCCAGCCCTCACCCTGTAGCCATTTTGCAGGGCGTGGGGAGGAGCCCCTTTCAGCC--CCTCTGCCCTGATCAGAGCTCTGGGAAAAGCAGGCCTCAGTTTCCTGGCTTGCTTTGGCTGGACGGTGGTGCTGGCTACTGCCT------------GCTCC---CCGAGTGAGCACTGATTAGAGCAGCTTCCACTCCAGGCAGAGTAGGG-CCCTTTCTGTTCATGTTCAGGAGACCAGCCCCACTCTCACAGCTCT-GAGGGTGGGGGCTTT-GAGGGGTAGGGG-------ATGT--GCACGCTC------TCAG-------CGTCCACTGTTCCCAGGA-GGCCCGTGGCTGAGATTGCTCAGGCAGAAACCATGGGCTGCGGCCGCACAGGGC-TAATGACAGGACAACCCACAACACAAGCTGCAGGACGTCTGGGCCGTTGAAGGCCCATCTGCCCCACGCGGTATCCTCATTTATGGAGACCATGCCTCTCTCTTCATGTACAGTTAATCTTGTTGA---------GCAGCTGTGCATATGGGGGatcattcccatttcacagatgagaaaacaggctcagagggaaacttgcctagggtcgcctagtcatttagtgggtgctgtgtgtgtgtgtgggggtccacattcaaacccaggtctccagaactaagagctgatgcactttccagccc----tccaggctcccTGGTCTTGTGTGGCCCAAGGGGCAGAATGGCTGCCTATGAGGGGCAGTCCGAAGGACGTAA-----CCTTCTTCCCTG---GTGCCCTGAGCGTCCTCAGGAGGTAGTGGGCA--TCAAAGATGCTTCCCAGAGCCCCTCCCCTCCCTGGACTCTGAATGCT-GGCAGTCATGCCCAAGACACTCCTGCCAGCTT-CCTTCTCTGGGCAGCCCTGGGCCCAGAGAACTGGATGTCTTGGTGGCTGTGGACATCTCCTCCACAAGGGTGTGGGTGTAGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAAA--GCAGGTCATAGGCCCTGGCCAGCTGGGAGGGGGCACAGT-GCTGGAAGTGGCTGGCATGCAGAGAAGATGCAGAATAGCCTGGAGGCCTGGGCACAGGCTGCCCCATGCAGGGCAGCT-TGTGGGACTCTG--GAAGACACCGTTTTGTCAGATTTGGATGCAGACCTGTTTGCCTTTCCGAATGGGGTGGGTGTATGGG--------------------------GCAtc--cccagcggca------gaggctttt-----------gagctccgctttgaag-gtttggctgtgtgaggaatggcagagaagggcattccagatggaggctgcagagtgagcaaaggcccagcaggaggagagtgca--gtgtgtCC-CCAGCAGTCACAGGTGGTGTGCGAAGTGGCGGCTCAGCTGGGCAGGACGGGCC---TCTGGGACGTGCGGGAAGAGCAGC-----------CCTCCCTGTGTAACCCTGGTTCCTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAACGAGGACTACTTCATTGAGCCCCTGGACGGTGACCCG-----GCTCGGCCCGGCCATGCCCAGCCCCACGTGGTGTACAAGCGTCAGGCCCTGGAGAGGCCAGCACAGCGGGGTGATTCCATTGCTGTAAGCACCTGTGGGGTGTCAGGTATG--CTCCTCTGCTCCCAGTTCTC--------------GGCCAGGGG---ACGTGAAGG-----GCCCTTTCTAGAAGCTCCTC---TCAACATCCCCATGCCCAGCGTCCCTTAGACCAGA
i calJac3.chr10             M 1066 C 0
s mm10.chr9                  90172233 1657 + 124595110 CCCCCATGGAAAGAGTTTGC------------AGAGGCTAAATAAGCCGTTGGCTCCTTTTCCCCTGGG--GTGCCAGTTAGGAGTGA-TTTTCTGCAAACTGAAC-------CCTTTGTATTTTAGCCTTACAGTCCAGACTAGAGACACC---------------------------------AGAAACCCCTCTCTTCCTTCCTCTGCTAG-------CCTCTAAGA-----------CAGTTTCTAA-------TTGCTCGTGGGAT-------GCCACTACCCAAAGGCTACAGTGCCTA---CAGTTTAGG------------TAGCACTCATT----------------TACTTTCTG--CACCGTCAAGTGCCCAA-------------------------GCGTGTATAGCAGGAATGGGG------------ATACACAGCC------ACAGCCACAGCCATCCGCTGCTTCCAAAG-GATTCTCGTCATA-ATGGCTCAGGTGGAATCCGT----------------GAGACCAGCAACAAGGT-GCCTGCACCCTGAGCTGCTCAGTGTGTAGGCCTGAG-AGGCCAATCTGTGCAGTAATCTATTCT-GGTTAAGGAGCCTGTGTCTGCTTCttag-gtgcacttcctctcattgagcctgcatggcagctgagcagaggagag---cttcctgttctatagatgaggaaacagtttc--cagcagacttgcctaaggtcacc--accattcaggga-tggaggctg-----------------attcaaagccccttctgtattccctaaagcaggtgtagttttcagtac----TGTGGGTTTCTTAGCTTTGTGTGACCCAAGGGGTCTAATCAGTGC---TAGTGGGCAGTCTAAAGACGGTGA---CACCGTCTTCTCTATTGGAGTCTCCAGCTTGCTACGGAGCTGGTGGATT--TCCTGAATGCATCTCATGACCTTCC----------ATTATCTATGCCAGGCAGATGTGCCCAAAGTGCTTCTGCCAGCTTCCCTTCTCTGGCCAGCTGTGGACTGGAGAAGCAGGATATCTTGGTGGTCATG-GCAACTGGGTGGCTTGGGTGTGACAG-AGCTGCTTTTGAAGTGATTCATTGCCTCAGGGAGACTGAAGACGTTGACAAGAAGCAATGGCCAGCTGGGAGGGGGCATGGTGGCTGGAGAAGATTGGCATTCAAAGGAGATGCAAAACATCCTGGGGGCATGGATATGGGCCACCCAATTCAGGAGGGCCGTCTGGGACTGTG--TAAAATGTCATCTTTTCAGATTCCAATGCAGATCTCTTTCTCCCTCCTAATGGTG----TGTGCTGG-----------------------GCCAAATC--CTTGGAGATGTTTCAAGAGGCTACTAGTAAGGGCTGGAGCTTTGCTTTGAAGCCCTTGGCTG--TGTAGAATGGCAAGGAA----------------------AAAATTAGCAACAGCCGAGAAGGAAGGAGTTGCCCTATCTGTCTATTGTGGGTC-CAGATTGTGGAGGT----GGGGCTCAACTgggcagggcagggcagggcagggGTAGGTGGAAAG-GCAAGCACGTGCCAGCCCTCCACCGGTAACCCTGGTGAATTTTTCCCAGAGAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCTCTGGATGGAGTTTCA-----GCTCAGCCTGGACATGCCCAGCCCCATGTGGTATACAAGCACCAAGGCTCTAGGAAGCAGGCCCAGCAGGGTGACTCAAGGCCTTCAGGCACCTGTGGGATGCAAGGTATGTACCCCCCTGC----------------GGAGTTG--TGTCTGGGGACTACCTGGAGACTCATGTCCTTTCTAGAAACCTCTC---TGAACACCCTCATGCCCAGC-TCCCTTGGACTGGA
i mm10.chr9                 I 16 I 232
s canFam3.chr3               58189490 1580 +  91889043 GGCTCTTTGAGAATCACCCT----GTAGACCAGGTCACTCCTAACACAGCGCAGCTGTCCGTCC-TGGGGAGCGTGGGTTATGCCTTTGTTCTCAGTG----GGGCAGCCTCGCCTTTA-------CCTTTCC--TTCCCG--AGAGCC-----------------------------------------------TCAGCC--ACCCTGCC----------------------------------------------CCGGGTGGA-GGTGATGCTGGCTATG--CTGCAGCCTTGATTGCCTCCCTCTGCTTGGG------TTGGCACGGCTCCCACCTCAAGCAGCACAGGGATCC-CTCTGCTCCTGGCCAGGTGACCAGATATGCCCTCCCCTTTCTGG-GGATGCAAGTGTGGGAACCGTAGAGGGGGAGGAACGTGTACATGGTCAGTGGGTCAG------CCGTCTACCGGTCCCAGGAGGGCCCTCAGCTCAGAGCGCGCCCA-AGAAGCCACAGGCTGTAG------------------CAGGACCACT----------GCTGCAGGACATCCAGACCTctga-----------------------------------gagccggggcctgtcctctcatat---ggtcatcttgttgagtct--gcagcagctgtgcatattg-gtgtcgttcccgttt-acagatgagcaga-aggctcagtgggaaccttgcccagggtcCTT-------------GCTGCTGG--------------------------------------------------TGCTGCACTTTCTGGCCC----TCGGGGCTCCC-AGCCTTGTGCAGCCCAAGGGGTACACTTGGTGC--AAAGAGGGAGCTGCAGAGGAGGCAA---GACCCTCCCCCC----AGAGGGCTGGGCTTCCTCTGGAGGTGGTGGGCTACCCAAAGATGCCTCCCCAGGCCC--CCCTGCCCTGGCCTCTGCACGCC-AGCGGATGTGCCCGAGATGCCCCTGCCTGCTTCCCTGCTCTGG-------CAGGGCCGGGCAGTAGAATGTCCTGGTGACTGTGGGCATCTCAGTGGCTTGGGTGTGGGCAGGGCTGCATTTGGAGTGATTCATCACCTCAGGGAGATCGGGA--------------CGCAGGCCAGGGGCAAGAGGACACAAT----------GGCTGGCATGCTGAGAAGAGGGAAGATGGTCTGGATGCCC-------CGCTGCCTGACTCAAGGCAGCCATCTGGAACCATGTTGAAGATGCCATCCT---AGATTTAG-CGTGGCTGCATTTCCTGCTCCTAACTGGGTGTGCATGGAGGGGGGGAGGGTAAAGCAGACATGTGGAGCATcctcctgagagta------ctagcttct-----------gagctctgccctgagg-ccttgggc-cgtgtgaaatggccgggaaggccatgcagggcagaaggaacagagtgagcagaggcccagaggggtgaaagcaca---tgtattgggggTTGGTCAGAGGCACTGAGAGC-GTGGGGCCTCA------------GGGAC---CGTGGG----GCGGAGGAACCCACTGCAG------CCTTTCCATGTGACCCTGGCGCTTCTTCCC-AGAAAGGTGTGTTCCAGCTTTCCAATGAGGACTACTTCATCGAGCCCCTAGAGGGTGTCCCA-----GCCCGGCCCGGCCATGCCCAGCCGCATGTGGTCTACAAGCGCCAGGCTTCTGAGAGGGAAGCAGCACTGGGTGGTTCCAGGGCCGCAGGCACCTGTGGAGTACAAGGTATG--TGCCTCTGCTGCCAGCTCTGGAGAAAGGGCTGCAGGCATTGGG-----------------CTCCTTTCCAGAAGCTTCTCTCATCAACATCTCCATGTCCAGCTCCCCTCAGACCAAA
i canFam3.chr3              C 0 I 1

a score=970834.000000
s hg38.chr15_KI270850v1_alt     11298 331 +    430880 GGATACAGACAGACAGACGGATACATCACTATAGCGTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGTCCCAGTCAGTCCCCTAGACTGACCTCCCTCTCTCCATCTCACCTACTTCTCCCACCTTGGGGCTCAACCTCCCTCTTGCTCCCTCCCC---ACCA-AGCCTATGGCA--CCTG--GCTCTGCCAGCCATTCTCCCTCCAGTGTCCAGACCAGGTGAGCCATGCCCAGCTCCAACAGGGCCATTAGCCAGGAACCTC--CCTCCCCAT-GCCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTATTGGGACCT-
s panTro4.chr15              79966394 331 +  99548318 GGATACAGACAGACAGACGGATACATCACTATAGTCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGTCCCAGTCAGTCCCCTAGACTGACCTCCCTCTCTCCATCTCACCTACTTCTCCCACCTTGGGGCTCAACCTCCCTCTTGCTCCCTCCCC---ACCA-AGCCTATGGCA--CCTG--GCTCTGCCAGCCATTCTCCCTCCAGTGTCCAGACCAGGTGAGCCATGCCCAGCTCCAACAGGGCCATTAGCCAGGAACCTC--CCTCCCCAT-GCCACCCCGCTCCCACCCTAGAATAACTAACCTCTATTATTGGGACCT-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79911994 328 +  99152023 GGATACAGACAGACA----GATACATCACTATAGCCTGTTCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGTCCTGTCCCAGTCAGTCCCCTAGACTGGCCTCCCTCGCTCCATCTCA-CTACTTCTCCCACGTTGGGGCTCAGCCTCCCTC-TGCTCCCTCCCCCCAACCA-AGCCTATGGCA--CCTG--GCTCTGCCAGCCATTCTCCCTCCAGTGCCCAGGCCAGGTGAGCCGTGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCCAC-GCCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTATTGGGACCT-
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22694474 331 - 121039945 GGACACAGACAGACAGATGGATATATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCGGGCCTGCCCCAGTCAATCCCCTAGACTGACCTCCCTCGCTCCATCTCACCTACTTCTCCCACGTTGGGGCTCAGCCTCCCTC-TGCTCCCTCCCC---CCCACAGCCTATGGTA--CCTG--GCTCTGCCAGCTGTTCTTCCTCCAGTGCCCAGGCCGGCTGAGCTGTGCCCAGCTCCAACAGGGCCACTAGCCAGGAACTTC--CCTCCCCCC-ACCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTACTGGGACCT-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112799154 306 - 170124641 GGACACAGAT----AGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGCCCCAGTCAGTCCCCCAGACTGATCTCTTTCGCTCCGTCTCACCTCCTTCTCCCACCTTGGGGCTCAACCTCCCTC-TGCTCCCTCCCC---CCCACAGCCTATGGCA--CCTG--GCTCTGCCAGCCATTCTTCCTCCAG--------------------TGCCCAGCTCCAACAGGGCCACTAGCCAGGAGCCTC--CCTCCCTCC-GCCACCCTGCTCCCACCCTAGAATAACT-ACCTCTATTACTGGGACCT-
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61582900 332 + 171882078 GGACACAGATAGACAGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCTTTTCAGGCCTGCCCCAGTCAATCCCCTAGACTGACCTCCCTCGCTCCATCTCACCTACCTCTCCCACCTTGGGACTCAACCTGCCTC-TGCTCCCTCCGC---CCCACAGCCTATGGCA--CCTG--ACTCTGCCAGCCATTCTTCCCTCAGTGCCCAGGCCAGGTGAGCCATGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCCCCTACCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTACTGGGACCT-
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108893528 310 - 162156779 GGACACAGATAGACAGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGCCCCAGTCAGTCCCCCAGACTGAtctcctccgctccatctcacctccttctcccaccttggggctcaacctccctc-tgctccctcccc---cccACAGCCTATGGCA--CCTG--GCTCTGCCAGCCATTCTTCCTCCAG--------------------TGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCTCC-GCCACCCTGCTCCCACCCTAGAATAACT-ACCTCTATTATTGGGAATT-
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1311010 324 +  24206276 GGACACAGATAGACAGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCTTTTCAGGCCTGCCCCAGTCAGT--------CTGATCTCCTTCGCTCCGTCTCACCTCCTTCTCCCACCTTGGGGCTCAACCTCCCTC-TGCTCCCTCCGC---CCCACAGCCTATGGCA--CCTG--CCTCTGCCAGCCATTCTTCCCCCAGTGCCCAGGCCAGGTGAGCCATGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCCCACACCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTACTGGGACCT-
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113724346 328 - 132174527 GGACACAGAAAGACAGACGGATCCATCACCATAGCCTGTGCCCTTAAT-TATGTCACAAGACTGTGTCCTCTGCCTTTTGGGCCTGCCCCAGTCAATCCCTCAT-CTGACCTCCCTCGCTCCATGTCACCTGCCTCTCCGACATTGGGGCTTGACCTCCCTC-TGCCCCTGCCCA---CCCATAGCCGATGGCA--CTCG--TCTCTGCCAGCCATTCCTCCTCCAGCACCCAGGCCAGGTGGGCCCTGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCCT--GCCACTCTGCTCCCACCC-AGAATAACTGACCTTTATTACTGGGACCC-
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90174122 300 + 124595110 GGCCACAAACATTTAAACAGACATACCACCCTAGTCTTTGA--------TGTTCCATTAACCTGTGGCATGGGCTTGACGCTTCTG---CAGGTAG-------GACTAGCCCTCCT-ACTGCTACTCATCTTCCTTGTCCACGTTGATAATT------CCTC-TACTCTCTCTAC---A-TATTGCTTATGGTGTCTCTG--ACTCCGTCAATCATTCTTTCTCCAGT-----GGTTGGGCTGCCTATAGTCAGTTCTAGCAGGGATACTGGTAAGGACCCTCTGCCTCTCTCT------CCTGCTTTGACTCCAGACTAACCAACCTGTACTATTGGGGCCT-
i mm10.chr9                 I 232 I 3080
s canFam3.chr3               58191071 212 +  91889043 GGATGCAGAC------------ATATCACCATAGCCCATGCCTTCCACATGCGCCACAGGCCTGAGGCCTCTGCCT-------CTGCCT--------------------------------------------------------------------------TACTCACTGCCT---ACCA----------CA--CCTGCAGCTCTGTTGGCCATTCTTCCTTGGGTGGCCGGG---------------------CCATCAGAGCAGCTAGCCAGGAACGTC--CCTCCCTTC-CCTGCTCTGGCCCCAGCCCAGAATAGGTGAGCTCTGTTACTGGAGACAT
i canFam3.chr3              I 1 C 0

a score=2126497.000000
s hg38.chr15_KI270850v1_alt     11629 682 +    430880 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCGGCCAGTCCAGGTGAAGAGCTGCCTGCTAAGGGTTGCTGGGATTTGGGGAATGCTTGGCTGGCATGCCAATCTC--AGGCTGCCCACAGCTCTGGTACTCCATTTGCTGGAGCACATATCCACAGAGGCATGCTTCTTGGCCTCATTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCTCAGTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCCAGGCTGGGGTTTAGAGGGTGGGGTCAGGGGTCAGTGTTGAGATGCACTAAGCCCCCAGGGTGGGAGGAAGTGACACGGGGAGATAGGGGCCCAGTAGCCAGCTTTGTCAAGCCCAGGAGTTCCCCTCCCATGGACACAgtactttactgcgtttatatccaccatttcatttaccctttgaggtccccccatgaggcagatcaacttattcctatttttagtcagggaatctcaagatcaaagaaagaaagtggtcag-gcagagccacacagcacaggtttggggcagagccaggaggggaattcaggcccctcgcctctgatccctgtgtggttcccagtgcccc--aGAGAACTCG--CTGAGGAGAAGCCCTGGAGACGTGTGCCCTGG
s panTro4.chr15              79966725 682 +  99548318 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTGGGATTTGGGGAATGCTTGGCTGGCATGCCAATCTC--AGGCTGCCCACAGCTCTGGTACTCCATTTGCTGGAGCACATATCCACAGAGGCGTGCTTCTTGGCCTCATTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCTCAGTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCCAGGCTGGGGTTTAGAGGGTGGGGTCAGGGGTCAGTGTTGAGATGCACTAAGCCCCCAGGGTGGGAGGAAGTGACACGGGGAGATAGGGGCCCAGTAGCCAGCTTCGTCAGGCCCAGGAGTTCCCCTCCCATGGACACAgtactttactgtgtttatatccaccatttcatttgccctttgaggtccccccatgaggcagatcaacttattcctatttttagtcagggaatctcaagatcaaagaaggaaagtggtcag-gcagagccacacagcacaggtttggggcagagccaggaggggaattcaggccccttgcctctgatccctgtgtggttcccagtgcccc--aGAGAACTCG--CTGAGGAGAAGCCCTGGAGACGTGTGCCCTGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79912322 682 +  99152023 GGAGGGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCGGCCCGTCCAGGTGAGAAGCTGCCTGCTAAGGGTTGCTGGGGTTTGGGGAATGCTTGGCTGGCATGCCAATCTC--AGGCTGCCCACAGCTCTGGTACTCCATTTGCTGGAGCACATATCCACAGAGGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGTGGAGCAGGCCCAGTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCGAGGCTGGGGTTTAGAGGGTGGGGTCAGGGGTCAGTGTTGCGATGCACTAAGCCCCCAGGATGGGAGGAAGTGACACAGGGAGATAGGGGCCCAGTAGCCAGCTTTATCAGGCCTAGGAGTACCCCTCCCATGgacaccgtactttaccgcatttatatccaccatttcatttacgctttgaggtccccctctgagacagatcaacttattcctatttttagttagggaatctcaagatcagagaaggaaagtggtcag-gcagagccacacagcacaggtctggggcagagccaggaggggaattcaggcccctcgcctctgatccttgtgtggttcccaatgcccc--aGAGAACTCG--CTGAGGAGAGGCCCTGGAGACGTGTGCCCTGG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22694805 676 - 121039945 GGAGTGTGCTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTGGGGTTTGGGAAATGCTTGGCTGGCAAGCCAATCTC--AGGCTGCCCACAGCTGTGTTACTCCATTTGCTGGAGCACATATCCACAGAGGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTTCCTTCTCTTCTGATCTGGAGCAGCCTGGGTCAGAGGAGCAGGCCCAGTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCCAGGCTGGGGTTTAGAGGGTGGGGTCA---GCCTGTGTTGGGATGCACTAACCCCCCAGGGTGGGAGGAAGTGACACGGGGAGATAGGGGCCCAGTTGCCAGTTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtactttaccgtgtttatatccgccatttcatttgccctttgaggtccccctgtaagg-----caacttattcctatttttagtcagggaatctcaagatcagagaaggaaagcgaccag-gcagagccacacagcacagatctggggcagagccaggaggggaattcaggcccctcgcctctgatccctgtgtggttcccagtgccccaGAGAGAGCTCA--CTGAGGAGAGGCCCTGGAGACGTGTGCCCTGG
i nomLeu3.chr6              C 0 I 3039
s rheMac3.chr7              112799460 679 - 170124641 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGTTTGGCTGGCATGCCAGTCTC--AAGTTGCCCACAGCTCTGGTCCTCTATTTGCTGGAGCACATATCCACGGAAGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGATCTTGGCCAGCTTCCTCAGGCTGGGGTTTAGAGGGTGAGGTCA---GCCTGTGTTGGGATGTACTAACCCCCTAAGAGGGGAGGAAGTGACACAGGGAGATAGGGGCTCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtactttactgtgtttatatccaccatttcatttgccctttgaggtccccctgcgaggcagatcaacttattcctatttttagttagggaatctcaagatgagagaaggaaggtgaccag-gcagagccacacagcacagatctggggcagagccaggaggagaattcaggcccctggcctctgatctcagtgtggttcccagtgcccc--aGAGAGAGCT--CTGAGGAGAGTCCCTGGAGACATGTGCCCTGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61583232 678 + 171882078 GGAGTGTGGTACCCAGTACCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGCTTGGCTGGCATGCCAATCTC--AACCTGCCCACAGCTCTGGTACTGCATTTGCTGGAGCACATATCCACAGAGGTATGCTTCTTGGCCTCAGTTTCCCCAGCTTCTTAGATGTGCTTCCTCTTCTGATCTGGTGCAGCCTGGGTC-GGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGGTCTTGGCCAGCCTCCCATGGCTGGGGTTTAGAGGGTGGGGTCA---GCCTGTGTTGGGATGTACTAACCCCCCAGGGTGGGAAGAAGTGACACAGGGAGATAGGGGCCCAGTAGCCAGTTTTGTCAGGCCCAGGAGTTCCCCTCCCATGGACACAgtactttactgtgtttatatccaccatttcatttgccctttgaggtccccctgcgaggcagatcaacttattcctatttttagtcagggaatctcaagatcaaagaaggtaagtgaccag-gcagagccacacagcacaggtctggggcagagccaggaggggaattcaggtccctggcctctgatccctgtgtggttcctaatgcccc--aGAGAACTTG--CTGAGGAGAGACCCTGGAGACATGTGCCCTGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108893838 681 - 162156779 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGTTTGGCTGGCATGCCAATCTC--AAGTTGCCCACAGCTCTGGTCCTCTATTTGCTGGAGCACATATCCACGGAAGCATgcttcttggcctcagtttccccagcttcATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCCCAGGAGGGCCAGCTGGGCTGGATCTTGGCCAGCTTCCTCAGGCTGGGGTTTAGAGGGTGAGGTCA---GCCTGTGTTGGGATGTACTAACCCCCCAAGAGGGGAGGAAGTGACACAGGGAGATAGGGGCTCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTCCCCTCCCATGGACACAGTACTTTACTGTGTTTATATCCACCATTTCATTTGCCCTTTGAGGTCCCCCTGTGAGGCAGATCAACTTATTCCTATTTTTAGTTAGGGAATCTCAAGATGAGAGAAGGAAGGTGACCAG-GCAGAGCCACACAGCACAGATctggggcagagccaggaggagAATTCAGGCCCCTGGCCTCTGATCTCAGTGTGGTTCCCAGTGCCCC--AGAGAGAGCTCACTGAGGAGAGGCCCTGGAGACATGTGCCCTGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1311334 679 +  24206276 GGAGTGTGGTACCCAGTACCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGCTTGGCTGGCATGCCAATCTC--AACCTGCCCACAGCTCTGGTACTGCATTTGCTGGAGCACATATCCACAGAGGTATGCTTCTTGGCCTCAGTTTCCCCAGCTTCTTAGATGTGCTTCCTCTTCTGATCTGGCGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGGTCTTGGCCAGCCTCCCCTGGCTGGGGTTTAGAGGGTGGGGTCA---GCCTGTGTTGGGATGTACTAACCCCCCAGGGTGGGAAGAAGTGACACGGGGAGATAGGGGCCCAGTAGCCAGTTTTGTCAGGCCCAGAAGTTCCCCTCCCATGGACACAgtactttactgtgtttatgtccaccatttcatttgccctttgaggtccccctgtgaggcagatcaacttattcctatttttagtcagggaatttcaagatcaaagaaggtaagtgaccag-gcagagccacacagcacaggtctggggcagagccaggaggggaattcaggcccctggcctctgatccctgtgtggttcctagtgcccc--aGAGAACTTG--CTGAGGAGAGACCCTGGAGACATGTGCCCTGG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113724674 646 - 132174527 AGAG----------------TCTCCTGCAGAGCGGCAATAGTGCCAGCTGGCCCAGGTGAGGAGCTGCTCACTAAGGGTTGCTGGGGCTTGGGCAATGCTCCCCTGGCATGCCAACCTC--AAGCTGCCCACAGCTCTGGTACTCTATTTGCTGGAACACAGATCCACAGAGGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCTGCCTTGGTGCGGGGAGCAGGCCCAGT------AGCTGGGCTGGGTGGTGGCCAGCCTCCCCAGGCCGGGGTTTTGAGGGCGGGATCT---GCCTGTGCTGGGGTATACTAA-CCCCCAGGGTGGGA-GAAGTGACACGGGGCGATA-GGGCCCAGGTGCCAGCTTTGTCAGGCCCAGGAGTTCTTCTCCCACGGACACATGACTTTATTGTGtttatatccaccatttcattt----------gtcaccctctgaggcagatcaacttattcctatttttagtcagagaatctcaagatcagagaaggcaagggaccag-gcagagccacacagcacgggtctggggcagagccaggaggggaatccaggaccctcgcctctgatcccagtgtggttcccagtgccccaGAAAGAGCTCG--CTGTGGAGGGGCCCTGGAGACATGTGCCCTGG
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58191283 562 +  91889043 --AGCA------CCAGCACCTCTTCTGCAGAGCCAC---ATTGCTGGCCAGTCCAGATGAGGAGCTGCCCACGAAGGGCCGCAGGGGTCTGGGGGCTGCTTGGCCAGCATGCCAGCCTCAGAAGCTG-CCATAGCTCAGTGACTTTATTCATGGGAACA-GTATCCA--GAGTTGGGCTTCTGGGCCCCAGTCTTCCTGGCTTCT--------------------GTCTGGGGTGGCTTAGA-CAGGGGAACAGGCCT-------CCAGTGGGGATGG------------CCTCCCAGGCAGGGCCCT-------GGGGTCC---ACCTGTGTGGGGATCTGCCAACCCC---AGGGGACAGGGAGCAACAC-TGGAGATGGG-----------------------GCCCAGGAGCTCCT-------------------------TGttcacatctactgtttca-ttgcaccccaagggcatcctctgaggctccttggctgattgctgtttatagtcggggatgctccgggtcagaggagggacgtgaccagagcagggtcacacagcccaggtctggggcagagccacagtgggtgtcctggcagcttg-ctctgacccc-gcactgttccctcggcccc--aAGTGAGCTG--CTGAGCGGGGGCCTT---GAGATGCACCCTCG
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I

a score=6895.000000
s hg38.chr15_KI270850v1_alt     12311 2 +    430880 GC
s panTro4.chr15              79967407 2 +  99548318 GC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79913004 2 +  99152023 GC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22698520 2 - 121039945 GC
i nomLeu3.chr6              I 3039 C 0
s rheMac3.chr7              112800139 2 - 170124641 GC
i rheMac3.chr7              C 0 I 3031
s macFas5.chr7               61583910 2 + 171882078 GT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108894519 2 - 162156779 GC
i papAnu2.chr7              C 0 I 3014
s chlSab2.chr29               1312013 2 +  24206276 GT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113725320 2 - 132174527 GC
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58191845 2 +  91889043 GC
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I

a score=11997.000000
s hg38.chr15_KI270850v1_alt     12313 3 +    430880 CAG
s panTro4.chr15              79967409 3 +  99548318 CAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79913006 3 +  99152023 CAG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22698522 3 - 121039945 CAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112803172 3 - 170124641 CAG
i rheMac3.chr7              I 3031 C 0
s macFas5.chr7               61583912 3 + 171882078 CAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108897535 3 - 162156779 CAG
i papAnu2.chr7              I 3014 C 0
s chlSab2.chr29               1312015 3 +  24206276 CAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113725322 3 - 132174527 CGG
i calJac3.chr10             C 0 I 2459
s canFam3.chr3               58191847 3 +  91889043 CAG
i canFam3.chr3              C 0 I 1963
e mm10.chr9                  90174422 3080 + 124595110 I

a score=72852.000000
s hg38.chr15_KI270850v1_alt     12316 29 +    430880 GATGGGCCAGAAGGATGGGGAACAGATGT
s panTro4.chr15              79967412 29 +  99548318 GATGGGCCAGAAGGATGGGGAACAGATGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79913009 29 +  99152023 GATGGGCCAGAAGGATGGGGAACAGATGT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22698525 29 - 121039945 GGTGGGCCAGAAGGATGGGGAAAAAATGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112803175 29 - 170124641 GGTGGGCCAGAAGGATGGGGAACAGATGT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61583915 29 + 171882078 GGTGGACCAGAAGGATGGGGAACAGATGT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108897538 29 - 162156779 GGTGGGCCAGAAGGATGGGGAACAGATGT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1312018 29 +  24206276 GGTGGGCCAGAAGGATGGGGAACAGATGT
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e canFam3.chr3               58191850 1963 +  91889043 I

a score=489895.000000
s hg38.chr15_KI270850v1_alt     12345 177 +    430880 TCCCTCAGGATCAGA----TGTTTATTTAAGACTGACTTGTTGAGAGCCATCGCTCTACCTGGGATAAGGTGATGGATGTGGAAGAGCATGATTCTGCATGTGGG-GACTCTGTCTCATTGTAGCATTTCCCAAGGAATATTTCAGGGAG--TGTGTTCCAAAGAATGCC-AGTAGTGCACTGTG
s panTro4.chr15              79967441 177 +  99548318 TCCCTCAGGATCAGA----TGTTTATTTAAGACTGACTTGTTGAGAGCCATCGCTCTACCTGGAATAAGGTGATGGATGTGGAAGAGCATGATTCTGCATGTGGG-GACTCTGTCTCATTGTagcatttcccaaggaatatttcagggag--tgtgttccaaagaatgcc-agtagtgcactgtg
i panTro4.chr15             C 0 I 1
s ponAbe2.chr15              79913038 177 +  99152023 TCCCTCGGGATCAGA----TGTTTATTTAAGACTGACTTGTTGAGAGCCATCGCTCTACCTGGGATAAGGTGATGGATGTGGAAGAGCACAATCCTGCACTTGGG-GACTCTGTCTCACTGCAGCATTTTCCAAGGAATATTTCAGGGAG--TGTGTTCCAAAGAATGCC-AGTAGTGCACTGTG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22698554 177 - 121039945 TCCCTCGGGATCAGA----TGTTTATTTAAGACTGATTTGTTGAGAGCCATCGCTCTACCTGGGATAAGGTGATGGATGTGGAAGAGCACGATCCTACACTTGGG-GACTCTGTCTCATTGTAGCATTTCCCAAGGAATATTTCAGGGAG--TGTGTTCCAAAGAATGCC-AGTAGTGCACTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112803204 177 - 170124641 TCCCTCGGGATCAGA----TGTTTATTTAAGACTGACTTGTTGAGAGCCATCGCTCTACCCGGGATAAAGTGATGGATGTGGAAGAGCACGATCCTGCACTTGGG-GACTCTGTCTCATTGTagcatttcccaaggaatatttcagggaa--tgtgttccaaagaatgcc-agtagtgtactgtg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61583944 177 + 171882078 TCCCTCCGGATCAGA----TGTTTATTTAAGACTGACTTGTCGAGAGCCATCGCTCTACCTGGGATAAAGTGATGGATGTGGAAGAGCATGATCCTGCACTTGGG-GACTCTGTCACATCATagcatttcccaaggaatatttcagggaa--tgtgttccaaagaatgcc-agtagcgtactatg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108897567 177 - 162156779 TCCCTCAGGATCAGA----TGTCTATTTAAGACTGACTTGTTGAGAGCCATCGCTCTACCCGGGATAAAGTGATGGATGTGGAAGAGCACAATCCTGCACTTGGG-GACTCTGTCTCATTGTAGCATTTCCCAAGGAATATTTCAGGGAA--TGTGTTCCAAAGAATGCC-AGTAGTGTACTGTG
i papAnu2.chr7              C 0 I 318
s chlSab2.chr29               1312047 177 +  24206276 TCCCTCGGGATCAGA----TGTTTATTTAAGACTGACTTGTTGAGAACCATCGCTCTACCTGGGATAAAGTGATGGATGTGGAAGAGCATGATCCTGCACTTGGG-GACTCTGTCTCATCATagcatttcccaaggaatatttcagggaa--tgtgttccaaagaatgcc-agtagcgtactatg
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               58193813 183 +  91889043 TCCCTCTGGAGCAAATGCTTGTTCACTTAACACCGATGTGCTGAGTGCCG--GCTCCACCCAGGATTAGGTGATGGATGGGCAAGAACAGGATCCCTTGCTTGGGAAACTCTGCCTTGTTGTaacgtttctccaagaaggttccagggaggacttgttccaagggatgctaaaaaatattctgtg
i canFam3.chr3              I 1963 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I

a score=140672.000000
s hg38.chr15_KI270850v1_alt     12522 53 +    430880 AAAAAAAAAGATGCTGCTGTTGAATAAGTTTGGCCACACAGGGTT-aaaaaaag
s panTro4.chr15              79967619 53 +  99548318 aaaaaaaaagatgctgctgttgaataagtttggccacacagggtt-aaaaaaag
i panTro4.chr15             I 1 C 0
s ponAbe2.chr15              79913215 54 +  99152023 AAAAAAAAAGATGCTGCTGTTGGATAAGTTTGGCCACACAGGGTTAAAaaaaaa
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22698731 51 - 121039945 --GAAAAAAGATGCTGCTGTTGAATAAGTTTGGCCACACAGGGTT-aaaaaaag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112803381 50 - 170124641 ---aaaaaagatgctgctgttgagtaagtttggCCACACAGGGTT-aaaaaaag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61584121 50 + 171882078 ---aaaaaagattctgctgttgaataagtttggccacacaggatt-aaaacaag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108898062 53 - 162156779 aagaaaaaagatgctgCTGTTGAGTAAGTTTGGCCACACAGggtt-aaaaaaag
i papAnu2.chr7              I 318 C 0
s chlSab2.chr29               1312224 50 +  24206276 ---aaaaaagattctgctgttgaataagtttggccacacaggatt-aaaacaag
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               58193996 50 +  91889043 ---aaaaaagatgctaccgttgaagaagtttggcaacaagggttt-aacaaaaa
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I

a score=382283.000000
s hg38.chr15_KI270850v1_alt     12575 187 +    430880 taaaacgggccaggcatggtggtgcacacctgtagtcccagctacttgaggggctgaggtgggaggattgcttgagcccaggaggtcgaggctgcagc--ggctgcagtgagctgagatcatgcaactgcactccata-tggatgacaaagtgagacactgtctcg-aaaaaaaaaaaaaaaaaaaaaggt
s panTro4.chr15              79967672 186 +  99548318 taaaacgggccaggcatggtggtgcacacctgtagtcccggctacttgaggggctgaggtgggaggattgcttgagcccaggaggtcgaggctgcagc--ggctgcagtgagctgagatcatgcagctgcactccata-tggatgacaaagtgagacactgtctcg--aaaaaaaaaaaaaaaaaaaaGgt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79913269 179 +  99152023 taaaacgggccaggcatagtggtacacacctatagtcccagctacttgaggggctgaggtgggaggattgcttgagcccaggaggtggaggctgcagc--ggctgcagtgagccgagatcaggcacctgcactccata-tgggtgacaaagtgagacactgtctca---------aaaaaaaaaaaaaggc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22698782 183 - 121039945 taaaacgggccaggcatggtggtgcacacctgtagtcccagctacttgaggggctgaggtgggaggattgcgtgagcccaggaggtcgaggctgcagc--agctgcagtgagccgagatcttgcagctgtactccatcttgggtgacaaagtgagactctgtctca------aaagaaaaaaaaaaaCGgt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112803431 182 - 170124641 taaaacaggccaggcatgatggtgcacgcctgtagtcccaggtacttgaggggctgaggtgggaggattgcgtgagcccaggaggtcgaggctgcagctgggctgcagtgagccgagatcatgcaactgcactccatcttgggtgacaaagtgagaccccgtctca---------aaagggaaaaaaaggt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61584171 172 + 171882078 taaaacgggccaggcatggtggtgtgcacctgtcatcccagctacttgagggactaaggtgggaggactgcttgagcccaggaggttga-----------ggctgcagtgagccgagatcatgcaactgcactccata-tgggtgacaaagtgagaccctgtctcatt-------aaaaaaaaaaaaaggt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108898115 182 - 162156779 taaaacaggccaggcatgatggtgcacgcctgtagtcccagctacttgagaggctgaggtgggaggattgcttgagcccaggaggtcgaggctgcagctgggctgcagtgagccgagatcatgcaactgcactccatcttgggtgacaaagtgagacaccgtctca---------aaagggaaaaaaaggt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1312274 179 +  24206276 taaaacgggccaggcatggtagtgcgcacctgtcgtcccagctacttgagggactaaggtgggaggactgcttgagcccaggaggtcga-----------ggctgcagtgagccgagatcatgcaactgcactccata-tgggtgacaaagtgagaccctgtatcattaaaaaaaaaaaaaaaaaaaaggt
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e canFam3.chr3               58194046   0 +  91889043 C

a score=1223776.000000
s hg38.chr15_KI270850v1_alt     12762 497 +    430880 aaaacagacttcgttactacaggacttctcagagccctcaaagtaaatattcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagtgaaacctgggttctgagcccagcttcaccctctctttgagcttcagttac---------ttcatttgtaaaatgaggataattgtgcctacctcagaagt---aagattaaatgagataatgcatgctaagcccccagcacagggactgtacatgttaggctcgatcaaggttggctgtggctatttttTTGGCTGCTGCAGTATCT--------GACCCACAGCCACCTTCAGGACAGCCTCATCTTTCTTTACCAACGCCACCTACAGACCCCAATTTATCCGTGTTCTCCCTGTGCTAGACTCAGATCTGAGTCCTAGAGCTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCTAttttct------------------------ttttttt------------tttttt
s panTro4.chr15              79967858 496 +  99548318 aaaacagacttcgttactacaggacttctcacagccctcaaagtaaatattcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagtgaaacctgggttctgagcccagcttcaccctctctttgagcttcagttac---------ttcatttgtaaaacgaggataattgtgcctacctcagaagt---aggattaaatgagataatgcatgctaagcccccagcacggggactgtacatgttaggctcgatcaaggttggctgtggctatttttTTGGCTGCTGCAGTATCT--------GACCCACAGCAACCTTCAGGACAGCCTCATCTTTCTTTACCAATGCCACCTACAGACCCCAATTTATCAGTGTTATCCCTGTGCTAGACTCAGACCTGAGTTCTAGAGCTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCTAttttc-------------------------tttcttt------------tttttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79913448 514 +  99152023 aaaacagacttctttactacaggacttctcagagccctcaaagtaaatatgcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttccgagcccagctttaccctctctttgagcttcagttac---------ttcatttgtaaaacgaggataattatgcctaccttagaagt---aagattaaatgagataatgcatgctaagcccccagcacagggactgtacatgttaggctcaattaaggttggctgcggctatttttTTGGCTGCTGCAGTATCT--------GACTCACAGCCACCTTCAGGACAGCCTTATCTTTCTTTACCAACGCTATCTACAGACCTCAATTTATCAGCGTTCTCCCCGTGCTAGACTCAGACCTGAGTCCTAGGGCTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTTACCCTAttttctttctt-------tctttctttttcttttttt------------tttttt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22698965 524 - 121039945 aaaacagacttcgttactacaggacttctcagaaccttcaaagtaaatatgcattgagaatccctaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttccgagcccagctttatgctctctttgagcttcggttac---------ttcatttgtaaaacaaggataattgtgcctaccttagaagtaagaagattaaatgagataatgcctgctaagcccccagcacagggactgtacatgtgaagctcgatcaaggttggctGTGGCAATTTTTTTGGCTGCTGCAGTATCT--------GACCCACAGCCACCTTCAGGACAGCCTCATCTTTCTTTACCAATGCTACCTACAGACCCCAATTTATCAGTGTTCTCTCCATGCTAGACTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCATtttctttcttctttctctctctctctttctctcttt------------ctttct
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112803613 493 - 170124641 aaaacagacttctttactacaggacttctcagagccctcaaaataaatatgcattgagaatccccaacagaataggcaggcagcattccccacatttaggaaata--agcaggagctttgaagcagcgaaacctgggttctgagcccagcttcaccctctctttgagcttcagctac---------ttcatttgtaaaatgaggataattgtgcctaccttagaagtaagaagattaaatgagataatgcatgctaagcccccagcacagggactgtacatgttaggctcattcaaggttggctgtggctatttttTTGGCTGCTGCAGTATTT--------GACCCACAGCCACCTTCAGGACAGCCACACCTTTCTTTACCAACACTACCTACAGAGCCCAATTTATCAGTGTTCTCCCTGTGCTAGATTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCATtttc-------------------------tttcttt------------------
i rheMac3.chr7              C 0 I 1962
s macFas5.chr7               61584343 510 + 171882078 aaaacagacttctttactacaggacttctcagagccttcaaaataaatatgcgttgagaattcccaacagaataggcaggcagcattccccaaatttaGGAAGTA--AGCAGGGGCTTTGAAATAGCAAAACCTGAATTCCGAGCCGAGTttcaccctctctttgagcttcagttac---------ttcatttgtaaaacgaggataattgtgcctaccttagaagtaacaagattaaatgacataatgcgtgctaag-tccaagcacagggactgtacatgttaggctcaatcaagattggctgcagctatttttTTGGCTGCTGCACTATCT--------GACCCACAGCCACCTTCAGGATAGCCACACCTTTCTTTACTAACGCCACCTACAGACTCCAGTTTATCATCATTCTCCCCATGCTAGATTCAGACCTGAGTCCTAGAACTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCGTtttc-------------------------tttctttctctctctctctttcttt
i macFas5.chr7              C 0 I 61
s papAnu2.chr7              108898297 500 - 162156779 aaaacagaCTTCTTTACTACAGAACTTCTCAGAGCCctcaaaataaatatgcattgagAATCCCCAACAGAATAGGCAGGCAGCATTCCCCAAATTTAGGAAATA--AGCAGGGGCTTTGAAGCAGTGAAACCTGGGTTCTGAGCCCAGCTTCACCCTCTCTTTGAGCTTCAGttac---------ttcatttgtaaaatgaggataattgtGCCTACCTTAGAAgtaagaagattaaatgagataatgcatgctAAGCCCCCAGCACAGGGACTGTACATGTTAGGCTCATTCAAGGTTGGCTGTGGCTAtttttttGGCTGCTGCAGTATTT--------GACCCACAGCCACCTTCAGGACAGCCACACCTTTCTTTACCAACGCTACCTACAGAGCCCAATTTATCAGTGTTCTCCCTGTGCTAGATTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTcaccccattttc-------------------------tttcttt-----------tttcttt
i papAnu2.chr7              C 0 I 57
s chlSab2.chr29               1312453 499 +  24206276 aaaacagacttctttactacaggacttctcagagccttcaaaataaatatgcgttgagaatttccaacagaataggcaggcagcattccccaaatttaGGAAGTA--AGCAGGGGCTTTGAAATAGCAAAACCTGAATTCCGAGCCCAGcttcaccctctctttgagcttcagttac---------ttcatttgtaaaatgaggataattgtgcctaccttagaagtaacaagattaaatgacataatgcatgctaagctccaagcacagggactgtacatgttaggctcaatcaagattggctgcagctatttttTTGGCTACTGCACTATCT--------GACCCACAGCCATCTTCAGGATAGCCACACCTTTCTTTACCAACGCCACCTACAGACTCCAATTTATCATCATTCTCCCCATGCTAGATTCAGACCTGAGTCCTAGAACTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCGTtttc-------------------------tttcttt------------ctcttt
i chlSab2.chr29             C 0 I 13
s canFam3.chr3               58194046 437 +  91889043 agaacagacttgtttactgcaggacttgtcagagccttcagagctaataagcactgagaattccta--aaaCTAAACAGAAGGTATTTTCCCAAGTTAGAAAGGAAGAGCAGGGGCTTTG----GGTCAAACCTG-GTTCTGGTCCCAAATTAACTGTCTCTTGGAGCCTCAGCAACAGAGGGGGATGCA--TAATaaatggggacgcttacacccaccttagaagtaggacaatcaatcgagatgttgcaggtaggatgcccagtacagggactATTCCTGTTGGGCTTGGCTTG---TGTCTGATGCTACTGGGGTGGCTGCTACAGCACCTGCCCTCTAGCCCCACAGCCACCTGCAGGGCAGCCTC-----CCTCTGCTGGGGCCTCTGACAGGCCC---GTTTGCAGTGTCCTCTCTGGGCCAGACCC-TATCTGTGCCTGGGAGCTCGGGGG-------------------------------------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I

a score=17989.000000
s hg38.chr15_KI270850v1_alt     13259 14 +    430880 ttttttt-gagatgg
s panTro4.chr15              79968354 14 +  99548318 ttttttt-gagatgg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79913962 14 +  99152023 ttttttt-gagatgg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22699489 15 - 121039945 ttcttttggagatgg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61584914 14 + 171882078 tttcttt-cagatga
i macFas5.chr7              I 61 C 0
s papAnu2.chr7              108898854 14 - 162156779 tcttttg-gagatgg
i papAnu2.chr7              I 57 C 0
s chlSab2.chr29               1312965 14 +  24206276 tttcttt-cagatgg
i chlSab2.chr29             I 13 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e canFam3.chr3               58194483  0 +  91889043 C
e rheMac3.chr7              112804106 1962 - 170124641 I

a score=38049.000000
s hg38.chr15_KI270850v1_alt     13273 21 +    430880 agtctcactctgtccccc-agg
s panTro4.chr15              79968368 21 +  99548318 agtctcactctgtccccc-agg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79913976 22 +  99152023 agtctcactctgtcccccaaga
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22699504 21 - 121039945 agtcttgctctgtcaccc-agg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61584928 21 + 171882078 agtctctctctgttacct-ggg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108898868 21 - 162156779 agtcctgctctgtcaccc-agg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1312979 21 +  24206276 agtctctctctgttacct-ggg
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113727784 21 - 132174527 agttttgctctgttgccc-agg
i calJac3.chr10             I 2459 C 0
s canFam3.chr3               58194483 11 +  91889043 ----------TGTCCACT-AGG
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e rheMac3.chr7              112804106 1962 - 170124641 I

a score=206856.000000
s hg38.chr15_KI270850v1_alt     13294 104 +    430880 tcggagtgcagtggcgtgatctcagctcactgcaacctccgccttct--ggttcaagcgattttcctgcctcagcctcctgagcagctgggactacaggcgcatgc
s panTro4.chr15              79968389 104 +  99548318 tcagagtgcagtggcgtgatctcggctcactgcaacctccgccttct--ggttcaagcgattttcctgcctcagcctcctgagcagctgggactacaggcgcatgc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79913998 104 +  99152023 tcggagtgcagtggcatgatctcggctcactgcaacctccgccttct--ggttcaagtgattttcctgcctcagcctcctgagtagctgggactacaggcgcatgc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22699525 106 - 121039945 tcagagtgcagtggcacaatctcagctcactgcagcctctgcctccctgggtcccagagattctcctgcctcagcctccctgggggctgggattacaggcatgcgc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61584949 104 + 171882078 tcggagttcagtggcgcgatctcggctcactgcaacctctgcctcct--ggttcaactgattttcttgccgcagcctcctgagtagctgggactataggcgcatgc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108898889 106 - 162156779 tcggagtgcagtggtgaaatcgcagctcactgcagcctctgccttcctgggttccagcaattctcctgcctcagcctcccaggtagccgggattacaggcatgcgc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1313000 104 +  24206276 tcggagttcagtggcgcgatctcggctcactgcaacctctgcctcct--ggttcaactgattttcctgccgcagcctcctgagtagctgggactataggcgcatgc
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113727805 105 - 132174527 ctagagtgcaatggtgtgatctcggctcactggaacttccacctccc-aggttcaaatgactctcctgcctcagcctcctgagtagctgggactacaggtgtgtgc
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e canFam3.chr3               58194494   0 +  91889043 C
e rheMac3.chr7              112804106 1962 - 170124641 I

a score=235677.000000
s hg38.chr15_KI270850v1_alt     13398 149 +    430880 caccacactcagctaatt--tttttgtatttttagtagagatgggatttctccatgttaaccaggctggtctcgagctcctgacctc--gtgatttgccca----cctcagcctcccaaagtgccgagattacaggtatgagccaccgtgctcagcc
s panTro4.chr15              79968493 149 +  99548318 caccacactcagctaatt--tttttgtatttttagtagagatggggtttctccatgttaaccaggctggtctcgaactcctgacctc--gtgatttgccca----cctcagcctcccaaagtgccgagattacaggtatgagccaccgtgctcagcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79914102 149 +  99152023 caccacacttggctaatt--tttttgtatttttagtagaggtggggtttctccatgctggccaggctggtctcgaactcctgacctc--gtgatctgccca----cctcagcctcccaaagtgccaagattacaggtatgagccaccgtgctcagtc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22699631 147 - 121039945 cactatgccgagctaa----tttttgtatttttagtagagatggg-tttcaccat-ttggccaggctggtctcgaactcctgacctcaggtgatccacccg----ccttggcctcccaaagtgttgggactacaggcgtgagccaccacacccagcc
i nomLeu3.chr6              C 0 I 1588
s macFas5.chr7               61585053 149 + 171882078 caccacactcggctaatt--tttttgtatttttaatagagatggggtttctgcatgttggccaggctggtttcaaactcctgacctc--gttatctgccca----tcttggcctcccaaagtgccaggattacaggtgtgagccaccgtgcccagcc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108898995 146 - 162156779 tactacgccgagctaa----tttttgtatttttagtagagat-gggtttcaccat-ttggccaggctggtctcgaactcctgacctcaggtgatgcacctg----ccttggcctcccaaagta-tggggttacaggcatgagccaccacacccaacc
i papAnu2.chr7              C 0 I 1596
s chlSab2.chr29               1313104 149 +  24206276 caccacactcggctaatt--tttttgtatttttagtagagatgggttttctgcatgttggccaggctggtttcaaactcctgacctc--gttatctcccca----tcttggcctcccaaagtgccaggattacaggtgtgagccaccatgcccagcc
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113727910 155 - 132174527 caccgtgcccagctaatttctttttgtatttttagtagagacagggttttgctatattggccaggctgttcttgaactccagacctt--gtgatccatccacctgccttggcctcctaaagtgctgagattacaggcgtgagccacaacaccctgcc
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58194494  24 +  91889043 ----------------------------------------------------CAT---CACAAGACAGGT-------TCCCCACCT-----------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e rheMac3.chr7              112804106 1962 - 170124641 I

a score=731930.000000
s hg38.chr15_KI270850v1_alt     13547 506 +    430880 AGTTTCACCCCATTTTCACCCCCAAttctgttcttactctctgaggccacaagcccttttcgaggggctcttgtcacactttcagctcaccaggagcctgtggttatctgtaacctccagatcttaccttcacaaacactgcACACCTCTGGCATGCTCTCCAGACCTGCAGCAGAACAGGGCTGGGCTTCCCTGGATATCATTTATccagttgaaacaccccacattgaccttgggccattaaccaatgttacttggttgagtt----gatcagccaattaagaccctgcctccctccaacatctcccaatgcctgtattaccccCATAGCTCCTGGGAGACAGTGAGGTTATATATGCTGAGGGAAGGCCTT--TGTGGTGGCACTAAGCTGCCCCTAGCCCTGACTCAGAATATAGCTTGGGTCAGTCCTCAGG-CAGGC-AGAGCAGACCCTCAGGGGCTTCTGGTCCTCTGGAGCCactttgctggggactgataccaagcttacctgt
s panTro4.chr15              79968642 506 +  99548318 AGTTTCACCCCATTTTCACCCCCAATTCTGTTCTTAGTCTCTGAGGCCACAAGCCCTTTTCGAGGGGCTCTTGtcacactttcagctcactaggagcctgtggttatctgtaacctccagatcttaccttcacaaacactgcACACCTCTGGCATGCTCTCCAGGCCTGCAGCAGAACAGGGCTGGGCTTCCCTGGATATCATTTATccagttgaaacaccccacattgaccttgggccattaaccaatgttactcggttgagtt----gatcagccaattaagaCCCTGCCTCCCTCCAACATCTCCCAATGCCTGTATTACCCCCATAGCTCCTGGGAGACAGTGAGGTTATATATGCTGAGGGAAGGCCTT--TGTGGTGACACTAAGCTGCCCCTAGCCCTGACTCAGAATATAGCTTGGGTCAGTCCTCAGG-CAGGC-CGAGCAGACCCTCAGGGGCTTCTGGTCCTGTGGAGCCactttgctggggactgataccaagcttacctgt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79914251 506 +  99152023 AGTTTCACCCCATTTTCACCCCCAATTCTGTTCCTACTCTCTGAGGCCATGAGCCCTTTTCGAGGGGCTCTTGtcacactttcagctcaccgggagcctgtggttatctgtaacctccagatcttaccttcacaaacactgcACACCTCTGGCATGCTCTCCAGGCCTGCagcagaacagggctgggcttccctgggtatcatttatccagttgaaacaccccacattgaccttgggccattaaccaatgttacttggttgagtt----gatcagccaattaagaccctgcctccctccaacatctcccaatgcctgtattgccccCATAGCTCCTGGGAGACAGTGAGGTTACATATGCTGAGGGAAGGCCTT--TGTGGTGGTACTAAGCTGCCCCTAGCCCTGACTCAGAATATAGCGTGGGTCAGTCCTCAGG-CACGC-CGAGCAGACCCTCAGGGGCTTCTGGTCCTCTGGAGCCACTTTGCTGGGGACTGATACCAAGCTTACCTGT
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7               61585202 503 + 171882078 AGTTTCACCCCATTTTCACCCCCAATTCTGTTCTTGCTCTCAGAGGTCACAAGCCCTTTTCGAGGGGCTCTTGTCACACTTTCAGCTCACCGGGAGCCTGTGGTTACCTGT-ACCTCCAGATCTTACCTTCACAAACACTGCACACCT-TGGCATGCTCTCCAGGCCTGCAGCAGAACAGGGCTGGGCTTCCCTGGGTATCATTTATccagttgaaacaccctacactgaccttgggccattaaccaatgctgcttggttgagtt----ggtcagccaattaagaccctgcctccctcaaacatctctcaatgcctgtattcccccCATAGCTCCTGGGAGACAGTGAGGTTATACATGCTGAGGGAAGGCCTT--TGTGATAGTACTAAGCTGTCCCTAGCCCTGACTCAGAATACAGCGTGGGTCAGTCCTCAGG-CAGGC-CGAGCAGACCCTCA-CCACTTCTGGTCCTCTGGAGTCactttgctggggactgataccgagcttacctgt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313253 504 +  24206276 AGTTTCACCCCATTTTCACCCCCAAttctgttcttgctctctgaggtcacaagcccttttcgaggggctcttgtcacactttcagctcaccgggagcctgtggttacctgtaacctccagatcttaccttcacaaacactgcACACCT-TGGCATGCTCTCCAGGCCTGCAGCAGAACAGGGCTGGGCTTCCCTGGGTATCATTTATccagttgaaacaccctacactgaccttgggccattaaccaatgctgcttggttgagtt----gatcagccaattaagaCCCTGCCTCCCTCCAACATCTCTCGATGCCTGTATTGCCCCCATAGCTCCTGGGAGACAGTGAGGTTATACATGCTGAGGGAAGGCCTT--TGTGGTAGTACTAAGCTGTCCCTAGCCCTGACTCAGAATACAGCGTGGGTGAGTCCTCAGG-CAGGC-CAAGCAGACCCTCA-CCACTTCTGGTCCTCTGGAGTCactttgctggggactgataccgagcttacctgt
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113728065 498 - 132174527 TGTTTTACTCCACTTCC-CCCCCAAttctgttcttgctttctaaggccacaagcccttttcgaggcgctttt-tcacactttcagctcagcgagagcctgtggttacctgtgacctccagatcttaccttcacaaacactgcACACCCCTGGCATGCTCTCCAGATCTGCagcagaacagggtcaggcttccctgggtatc----atctagttgaaacaccccacaatgaccttaggccattaaccaaagctacttggtggagtt----gatcagccaatgaagagcctgcctCTCTCCGACATCTCCCAATGCCTGCATTGCTTCTGTAGCTCCTGGGAGACAGCGGGGTTATACATGCTGAGGGAAGGCCTT--TGTGGTTGCACTAAGCCGCCC--AGCCCTGGCCCAGAATATAATGTGGGTCAGTCTTCAGG-CAGGC-CAAGCAGACCTTCAGGGGCTTCTGGTCCTCTGGAGCCACTTTGCTGGGGACTGATACCAAGCTTACCTGT
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58194518 491 +  91889043 ------GCCTGGTTTGCACCTCTCATCCTGTGTATGCTGTCTCAGGTCACTGGCCCTTTCTGAGTGGCTCGTGTTGTACTGTCCGCCTGCTGGAAGCTGGTGGTCACCTGTCACCCCCAGATCT----TTCAC-AATGTTGCACACCC-AGGC-TGCTGTCTGGGCCTGTGGCAGAACAGAGCTGGGCTT-CCTGGGGATCGTTTATCCAGTGGTGAC-CCCCACACGGACCTCAGGCCACTGACAGGCACCCTCCGGTTGAGCGAGCAGGTCAACCAGTGAGGACTCTGCCTCCCTCCAGAGCCTCCCAGGGTCTGCTTGGTCTCTGTA-CTTCTTGGGGGCAGGGGTGTTATACGTGCTAAGGGAGGGACTTGGTGTGGCTG----GAGCTGCCCCCGGCCCTAAGTCAGGGTACGG--GGGGCCAGTTGTCGGGACAGGTGTCAGCAGATACTCAGGCACTCCCTA-CCCCCAGAGCCACTTTGCTGGGACCTCCTGCCAAATGCACCTGT
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e papAnu2.chr7              108899141 1596 - 162156779 I
e rheMac3.chr7              112804106 1962 - 170124641 I
e nomLeu3.chr6               22699778 1588 - 121039945 I

a score=41486.000000
s hg38.chr15_KI270850v1_alt     14053 22 +    430880 ctgtggtctAGGAAAGATTTGT
s panTro4.chr15              79969148 22 +  99548318 ctgtggtctAGGAAAGATTTGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79914757 22 +  99152023 CTGTGGTCTAGGAAAGATTTGT
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7               61585705 22 + 171882078 ctgtggtctAGGAAAGATTTGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313757 22 +  24206276 ctgtggtGTAGGAAAGATTTGT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113728563 22 - 132174527 CTGTGGTCTAGGAAAGATTTGT
i calJac3.chr10             C 0 I 2538
s mm10.chr9                  90177502 22 + 124595110 CTATTGCCCAGAATAGGCCAGA
i mm10.chr9                 I 3080 C 0
s canFam3.chr3               58195009 22 +  91889043 CCGTAGTCTAGGAAAGACTTAT
i canFam3.chr3              C 0 C 0
e papAnu2.chr7              108899141 1596 - 162156779 I
e rheMac3.chr7              112804106 1962 - 170124641 I
e nomLeu3.chr6               22699778 1588 - 121039945 I

a score=-2590.000000
s hg38.chr15_KI270850v1_alt     14075 2 +    430880 --GG
s panTro4.chr15              79969170 2 +  99548318 --GG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79914779 2 +  99152023 --GG
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7               61585727 2 + 171882078 --GG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313779 2 +  24206276 --GG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113731123 2 - 132174527 --GG
i calJac3.chr10             I 2538 C 0
s mm10.chr9                  90177524 1 + 124595110 ---G
i mm10.chr9                 C 0 I 1
s canFam3.chr3               58195031 2 +  91889043 TC--
i canFam3.chr3              C 0 C 0
e papAnu2.chr7              108899141 1596 - 162156779 I
e rheMac3.chr7              112804106 1962 - 170124641 I
e nomLeu3.chr6               22699778 1588 - 121039945 I

a score=13323.000000
s hg38.chr15_KI270850v1_alt     14077 3 +    430880 TCT
s panTro4.chr15              79969172 3 +  99548318 TCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79914781 3 +  99152023 TCT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22701366 3 - 121039945 TCT
i nomLeu3.chr6              I 1588 C 0
s rheMac3.chr7              112806068 3 - 170124641 TCT
i rheMac3.chr7              I 1962 C 0
s macFas5.chr7               61585729 3 + 171882078 TCT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108900737 3 - 162156779 TCT
i papAnu2.chr7              I 1596 C 0
s chlSab2.chr29               1313781 3 +  24206276 TCT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113731125 3 - 132174527 CCT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90177526 3 + 124595110 CCT
i mm10.chr9                 I 1 C 0
s canFam3.chr3               58195033 3 +  91889043 TCT
i canFam3.chr3              C 0 I 1319

a score=90347.000000
s hg38.chr15_KI270850v1_alt     14080 30 +    430880 GGGAAGGGGCGTCGGAGGCCTCTTGTCCTC
s panTro4.chr15              79969175 30 +  99548318 GGGAAGGGGCGTCGGAGGCCTCTTGTCCTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79914784 30 +  99152023 GGGAAGGGGCCTCAGAGGCCTCTTGTCCAT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22701369 30 - 121039945 GGGAAGGGGCCTTAGAGGCCTGTTGTCCTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112806071 30 - 170124641 GGGAAGGGGCCTCGGAGGCCTCTTGTCCTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61585732 30 + 171882078 GGGAAGGGGCTTCGGAGGTCTCTTGTCCTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108900740 30 - 162156779 GGGAAGGGGCCTCGGAGGCCTCTTGTCCTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1313784 30 +  24206276 GGGAAGGGGCTTTGGAGGTCTCTTGTCCTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113731128 30 - 132174527 GGGAAGGGGCCTCGGAGACCTCTTGTCCTC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90177529 29 + 124595110 AGGAAGCAACCTGGAAGGATTTTGATTGT-
i mm10.chr9                 C 0 C 0
e canFam3.chr3               58195036 1319 +  91889043 I

a score=2944660.000000
s hg38.chr15_KI270850v1_alt     14110 845 +    430880 TGTAGGTTCTGCTGCTGCCACATTGGGGCA----------------------------------------------------------------------GTGCGTGTG-AGGTGTGGGGACACTCATGCATTGGTGCATGTGCATTGCCTATCC-GCTGTGCAGCCTGTGTG--CACC-------CGTGTGAGCGTCCCTGTGTGTGAGCACAGGTGTGCATTGCCCtgggtgggtgggtggcttggggtgggCATTGGCTGCTTGTATC--CTTCATCC-TGGTGACAGCCTGA------CC--CCCTCATCTCTTGGGCAGGTGGCTGGCCTGTTTCACGACCCCAGCATTGGGAACCCCATCCACATGACCATTGTGCTCCTGGTCCTTCTGGAAGATGAGGAGGTGAGCGGTCATGTGGTCCCACGCTGCCTGGCAAT-GGCTTCGGCTGCCAGAGCC-CTCCTGCCCCATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGACTGGACTGTGTCCCCTGCCAC-TCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCTCCTGCAGGAGGTTCCTA-CAGGAGGG---ATGGTCAGGCCGGAAGCTGGACTGGT--GCCTGCGGGCCTCCCACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTATGGGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCATGCACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGAGACGCCCACCCCCTGCAGCATGACACTGCCATCCTGCTCATCAGGTACTG-CAGCTGCAGGAGGGTGGGAGCCTGCATCTCAGGGAGGTGCTTCCCAGCCCTAG
s panTro4.chr15              79969205 845 +  99548318 TCTAGGTTCTGCTGCTGCCACACTGGGGCA----------------------------------------------------------------------GTGCGTGTG-AGGTGTGGGGACACTCATGCATTGGTGCATGTGCATTGCCTGTCC-GCTGTGCAGCCTGTGTG--CACC-------CGTGTGAGTGTCCCTGTGTGTGAGCACGGGTGTGCATTGCCCTGGGTGGGTGGGTGGCTTGGGGTGGGCATTGGCTGCTTGTATC--CTTCATCC-TGGTGACAGCCTGA------CC--CCCTCATCTCTTGGGCAGGTGGCTGGCCTGTTTCACGACCCCAGCATTGGGAACCCCATTCACATGACCATTGTGCGCCTGGTCCTTCTGGAAGATGAGGAGGTGAGCAGTCATGTGGTCCCACGCTGCCTGGCAAT-GGCTTCGGCTGCCAGAGCC-CTCCTGCCCCATGACCTGTGCTGCTCTGTATGGAAGGGCACAGGGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-TCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCGGAAGCTGGACTGGT--GCCTGCGGGCCTCCCACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTATGGGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCACGAGCAGTCACTCTCTCTGTCCCCAGGAGGACCTAAAGATCATGCACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCACCCCCTGCAGCATGACACCGCCATCCTGCTCATCAGGTACCA-CAGCTGCAGGAGGGTGGGAGCCTGCATCTCAGGGAGGTGCTTCCCAGCCCTAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79914814 832 +  99152023 TCCAGGTTCTGCTGCTGCCACATTGGGGCA----------------------------------------------------------------------GTGTGTGTG-AGGTGTGGGGACA--CATGCATTGGTGCATGTGCATCGCCTGTCC-GCTGTGCGGCCTGTGTG--CACC-------CGTGTGAGCGTCCCTGTGTGTGAGCATGGGTGTGCATTGCCCTGGGTGGGTGGGTGGGTTGGGGTGGGCATTGGCTGCTTGTATC--CTTCATCC-TGGTGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCACGACCCCACCATTAGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTGCTGGAAGATGAGGAGGTGAGCGGTCATGTGGTCCCACGCTGCCCGGCAAT-GGCTTCGGCTGCCAGAGCC-CTCCTACCCCATGACCTGTGC---------TGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-CCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---ATGGTCAGGCTGGAAGCTGGACTGGT--GCCTGCCGGCCTCCCACTGCCCTGCTGGGCCTCTGTCTCCTGCA-TTGTATGGGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCATGCACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCACCCCCTGCACCATGACACCGCCATCCTGCTCACCAGGTACCG-CAGCTGCAGGAGGGTAGGAACCTGCATCTCA-GGAGGTGCTTCCCGGCCCTGC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22701399 846 - 121039945 TCTAGGTTCTGCTGCTGCCGCATTGGGGCA----------------------------------------------------------------------GTGTGTGTG-AGGTGTGGGGACACTCATGCATTGGTGTACATGCATCGCCTGTCC-ACTGTGCAGCCTGTGTG--CACC-------AGTGTGAATGTCCCTGTGTGTGAGCATGGGTGTGCATTGCCCtgggtgggcgggtgggttggggtgggCATTGGCTGCTTGTATC--CTTCATCC-TGGTGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTGCTGGAAGATGAGGAGGTGAGCGGTCATGTGGTCCCACGCTGCCCGGCAAT-GGCTTCGGCTCCCAGAGCC-CTCCTGCCCCATGACCTGTGCTGCTCTGTATGGAAGGCCACAGTGAAGGCCTCCTTGGCCTGGACCGTGTCCCCTGCCAC-CCCCTGGTTCCTGACTGACTCTCTCTCAGCTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCTGGAAGCTGGATTGGT--GCCTGCGGGCCTCCCACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTATGAGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGAGACACGCACCCCCTGCACCACGACACCGCCATCCTGCTCACCAGGTACCGCCAGCTGCAGGAGGATGGGAGCCTGCATCTCAGGGAGGTGCTTCCCCGCCCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112806101 916 - 170124641 TCCAGGTTCTGCTGCTGCCGGGTTGGGGCAGAGGTGTGGGGACACTCATGCATTCGTATACGTGCATCACCTGTCCGCTGTGCAGCCTGTGTGTACCCGTGTGTGTGTG-AGGTGTGGGGACACTCATGCATTCGTATACGTGCATCACCTGTCC-GCTGTGCAGCCTGTGTG--TACC-------CGTGTCAGCGTCCCTGTGTGTGAGCATGGGTGTGCGTTGCCCTGGGTAGGTGGGTGGGTTGGAGTGAGCATTGGCTGCTTGTATC--CTTCATCC-TGGTGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTTCTGGAAGATGAAGAGGTGAGCGTTCATGTGGTCCCACGATGCCCGGCAAT-GGCTTCCGCTGCCAGAGCC-CTCCTGCACCATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAT-CCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCTCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGCTGGACTGGT--GCCTGCTGGCCTCCCACTGCCCTGCTGGGTCTCTGTCTCCTGCCTTTATATGGAGGAGAATTGGGCCTGACCCTCTCAGAACTCAG-AGGAGGCATGAGTGGTCATTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACACCCACCCCCTGCACCATGACACCGCCATCCTGCTCACCAGGTACTGCCAGCTGCAGGAGGGTGGGAGCCTGCATCGCAGGGAGGTGCTTCCCGGCCCTGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61585762 845 + 171882078 TTCAGGTCCTGGGGCTGCCGGGTTGGGGTA----------------------------------------------------------------------GTGTGTGTG-AGGTATGGGGACACTCATGCATTGGTGTACGTGCATCACCTGTCC-ACTGTGCAGCCTGTGTG--CACC-------CGTGTGAGCGTCCCTGTGTGTGAGCATGGGTGTGCGTTGCCCtgggtgggagggtgggttgg-gtgggCATTGGCTCCTTGTATC--CTTCATTC-TGGTGACAGCCTGA------CC--CCCTCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCACATCCACATCACCACTGTGCGCCTGGTCCTTTTGGAAAATGAAGAGGTGAGTGGTCATGTGGTCCCATGGTGCCCAGCAAT-GGCTTTGGCTGCCAGAGCC-CTCCTGCACCATGACCTGTGCTGCTCTGTATGGAAGGGCATAGTGAAGGCCTCCTTGGCCTGGACCGTGTCCCCTGCCAA-CCCCTGGTTCCTGAAGGACCCTCTCTCAGGTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGCTGGACTGGT--GCCTGTGGGCCTCCCACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTATGGAGGACAATGAGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCATTCTCTCTGCTCCCAGGAGAACCTAAAGACCACACACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATAAAGAGGGACGCCCACCCCCTGTACCATGACACCGCCATCCTGCTCAGCAGGTACCATCAGCCGCAGGAGGGTGGGAGCCTACATCTCAGGGAGGTGCTTCACAGCCCTGC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108900770 846 - 162156779 TCCAGGTTCTGCTGCTGCTGGGTTGGGGCa----------------------------------------------------------------------gtgtgtgtg-aggtgtggggaCACTCATGCATTCGTGTACGTGCATCACCTGTCC-GCTGTGCAGCCTGTGTG--TACC-------CGTGTCAGCATCCCTGTGTGTGAGCATGGGTGTGCGTTgccctgggtgggtgggtgggttgggGTGAGCATTGGCTGCTTGTATC--CTTCATCC-TGGTGACAGCCTGA------cc--cccccATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTTCTGGAAGATGAAGAGGTGAGCGTTCATGTGGTCCCACGCTGCCCGGCAAT-GGCTTCGGCTGCCAGAGCC-CTCCTGCACCATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-CCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCTCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGCTGGACTGGT--GCCTGCTGGTCTCCCACTGCCCTgctgggtctctgtctcctgccttTATATGGAGGAGAATTGGGCCTGACCCTCTCAGAGCTCAG-GGGAGGCATGAGCGGTCATTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACACCCACCCCCTGCACCATGACACCGCCATCCTGCTCACCAGGTACTGCCAGCTGCAGGAGGGTGGGAGCCTGCATCGCAGGGAGGTGCTTCACAGCCCTGC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1313814 852 +  24206276 TTCAGGTCCTGGGGCTGCCGGGTTGGGGTA----------------------------------------------------------------------GTGTGTGTG-AGGTATGGGGACACTCATGCATTGGTGTACGTGCATCACCTGTCCAACTGTGCAGCGTGCAT---CACCTGTCCAACGTGTGAGCGTCCCTGTGTGTGAGCATGGGTGTGCGTTGCCCtgggtgggagggtgggttgg-gtgggCATTGGCTCCTTGTATC--CTTCATTC-TGGTGACAGCCTGA------CC--CCCTCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCACATCCACATCACCACTGTGCGCCTGGTCCTTCTGGAAAATGAAGAGGTGAGTGGTCATGTGGTCCCATGGTGCCCAGCAAT-GGCTTTGGCTGCCAGAGCC-CTCCTGCACCATGACCTGTGCTGCTCTGTACGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACCGTGTCCCCTGCCAA-CCCCTGGTTCCTGAAGGACCCTCTCTCAGGTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGGCAGAAGTTGGACTGGT--GCCTGTGGGCCTCCCACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTACGGAGGACAATTAGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCATTCTCTCTGCTCCCAGGAGGACCTAAAGACCACACACCATGCAGACAACACCCTGAAGAGCTTCTGCGAGTGGCAGAAAAGCATCAACATGAAGAGGGATGCCCACCCCCTGTACCATGACACCGCCATCCTGCTCAGCAGGTACCACCAGCCGCAGGAGGGTGGGAGCCTACATCTCAGGGAGGTGCTTCACGGCCCTGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113731158 819 - 132174527 TCCAGGTTCTGCCGCTGCCAGGTTGGGGCA----------------------------------------------------------------------GTGTGTGTG-AGGTGTGGGGACACTCGTGCATTGGTGCTTGTGCATCACGTGTCA-GCTGCGCACCCTGCGTG--CACC-------TGTGCCAGCATCCCTGTGTGTGAGCATGGGTGTGCGTCGTGCTGTGTGGA--------TCGGGGTGGGCATT---------------CTTCATCC-TGATGGCAGCCTGA------TTGACCCCCCTCTCTTGGGCAGGTGGCCGGTCTATTTCATGACCCCAGCATCGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTGCTGGAAGATGAGGAGGTGAGTGGCCCTGTGGTCCCACGCTGCCTGGCAAT--GCCATGGCTGCCAGAGTC-CTCTTGCCCCATGACCTGTGCTGCGCTGTATGGAAGAGCACAGTGAAGGCTTCCTTGGCCTGGACTGTGTCCCCTGCCACGCCCCTGGTCCCTGACTGATCCTTTCTCAGGTCCC-------CTGCAGGAGGTTCCTA-CAGGAGAG---GTGGTCAGGCCAGAAGCGGGACCAGT--GCCCGCAGGCCTCCCACCACCCTGCTGGACCTGTGTCTCCTGCC-TTGTATGGAGGAGAATTGGGCTTGACCCTCTTGGAACTCAG-GGGAGGCGTGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGATGCCCACCCCCTGCACCATGACACCGCCGTCCTGCTCACCAGGTGCGGTCAGCCACAGGAGGGTGGGGGCCTGCAGCTCAGGGAGGTGCTTCCTGGCGCCGA
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90177558 751 + 124595110 -----GATCTGTCACTGCCGGCTTGGGGCA----------------------------------------------------------------------GTGTGAGTGCAGGTATGGAGATGTGCAGGCACTAGTGCATACATGTCTGCAGTAA-TGTGTGCAGCTGGTATGCCCTCC-------CTTGTGTGATCACATTTGTGTGATCA--GATGTGCATGGTCCCGGGTGG---------CTGGAGTGGGTACTGGGTTC-CATTTC--TTATATCC-TAGTTGTAACCTGATTCCTCTC--CCCGCCCCTCTTGGATAGGTGGCTGGACTCTTTCATGATCCAAGCATTGGGAACCCCATTCACATCAGCATTGTGCGCCTTATCATACTGGAAGACGAGGAGGTGAGAGGTCACATAGTCCCAAGCTGTCCC-CAAC-AG-----------GAAGCT-TTCCAGCTCTGTGCCTTGAG-TGCCCTA---GGAAGGACA-AGTAGAGGCCTCCTGGACCTTGACAGTGTCCTCTGATAC-TTCTT-GTCCTTGA--GACAATCTTT---GTCC----------------AGTTACAA-CA-GAGGG---GTGG--AGGCTGGGA---GGCCTGGTCAGTCTGT---------------CTCTTTAATCTCTGACTCCTGTCATGGTGTGGGAGTAGATTGGGCTTAATCCCC--AGAGCTCAGTATGAGTCCTGAGCCACTATTCTTCCCCTCTGCAGAAGGACTTAAAGATCACACACCATGCCGAAGAGACTCTGAAGAACTTCTGTAGGTGGCAGAAGAACATTAACATAAAGGGGGATGACCACCCACAGCACCATGACACTGCCATCCTGCTCACCAGGTATCT-CACCAG--GAAGGGTGGGAGT-------------------------GCCTTAG
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58196355 718 +  91889043 TGCAGACTCTGTTGTCGCCCGTTTGGGGAA----------------------------------------------------------------------GCCTGCATGCAGGGGTGAGGACGTTCATGTGTGTGTGTGCCTG---TGCACGTCC-TGAGTGCAGCCCACATG--CGCT-------AG-GTGAGC-CCCCTGTGTGTGAGCAGGGGTGTGCATGCCTTTGCATGG--------------GTCAGTGCTGGCTGTCCAGACCTTCTCTGTCCAGGGCAACAGCCTAA------CC--C---CATCTCTCGGGCAGGTGGCCGGCCTGTTTCACGACCCCAGCATTGGGAACCCCATCCACATCACCATCGTGCGCCTGGTCCTGCTAGAGGATGAGGAGGTGAGAGGTCGCATGGCCCCAGGCTGTCTCGGGATGGGCATTGACTGCCAGAGCCGCCCCATCCCCATCACCTGAGCTGCCCTGTATGGTAGGGCACAGCGA--GCCTCCTTGGCCCGAGCTGTG-CCCCTCCCAC-CCCCAGG-CCCCGGCTGGCCCTCTCTCAGGTGC--------TCCCAGGATATGCCTGTCAGGCGGGGGTGTGGTCAGACTGGAGGCTGGACCGGG--GCCA---------------------------------------------------------CGAGCCTGGCT--------------------------GTGGTTGTTCTCTCTGCCCCCAGGATGACCTGAAGATCACCCACCATGCAGACAATACTCTGCGGAGCTTCTGCAAGTGGCAGAAGAGCATCAACATGAAGGGGGACGCCCACCCACTGCACCATGACACCGCCATCCTGCTCACCAGGTGTCACCAGCCGCGGGGGTGCAGGGCCC---------AGGGGGTGT-------------
i canFam3.chr3              I 1319 C 0

a score=347170.000000
s hg38.chr15_KI270850v1_alt     14955 124 +    430880 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTGTCAGGGAGCCCCATTTTGAGGAGAGTTTGCGCACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTAGGGAGGTctttttattttgaaat
s panTro4.chr15              79970050 124 +  99548318 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTGTCAGGGAGCCCCATTTTGAGGAGAGTTTGTGCACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTGGGGAGGTctttttattttgaaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79915646 123 +  99152023 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTCTCAGGGACCCCCGTTTTGAGGAGAGTTTGTACACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTGGGGAGGTC-ttttattttgaaat
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22702245 122 - 121039945 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTGTCAGGGAGCCCCA--TTGAGGAGAGTTTGCTCACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTGGGGAGGTctttttattttgaaat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112807017 124 - 170124641 AGGAGAAGCCCTGGTGGACGAGGGGGCCGT--GCTCTCAGGGATCCCCATTTTTAGGAGAGTTTCCGCACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTTGGGGAGGTctttttattttgaaat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61586607 124 + 171882078 GGGAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTCTCAGGGAGCCCCATTTTGAGGAGAGTTTGCACACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTCGGGGACGTCAttttattttgaaat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108901616 124 - 162156779 GGGAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTCTCAGGGATCCCCATTTTTAGGAGAGTTTCCGCACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTTGGGGaggtctttttattttgaaat
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1314666 124 +  24206276 GGGAGAAGCCCTGGTGGAGGAGGGGGCCAT--GCTCTCAGGGAGCCCCATTTTGAGGAGAGTTTGCGCACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTCGGGGATGTCAttttattttgaaat
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113731977  90 - 132174527 GGGAGAAGCCCTCGTGG------------------------------------GACGAGAGTCTGCATACTTTTGGCCCAACGCTGGATTCTGTCAGCACTTTGGGAGGTctttttattctgaaat
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58197073 112 +  91889043 ----GGGGCCCAGGCCGGAGTGGGAGCAGCCGGCCCCCGAGGCGCTGTG---TGGGGGCAGTTTAC-TGGCTTTGGCTGGAGACTGGATTCC-TCAGCACTCGGGGAGATCTTGT-----TGAAAT
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90178309   0 + 124595110 C

a score=504595.000000
s hg38.chr15_KI270850v1_alt     15079 177 +    430880 aattgtggattctcacactcttgtcaaaaataata--gagagagggcctgtatagccttcatccatttcccccgg-tg----gtaacatcttgcatgactacagcacagtatcccaatcaggaaactgacactgataccatccacagacttactcaggtctcatcggttccacatgtacttccc
s panTro4.chr15              79970174 178 +  99548318 aattgtggattctcacactgttgtcaaaaataata--gagagagggcctgtatagccttcatccatttcccccggttg----gtaacatcttgcatgactacagcacagtatcccaatcaggaaactgacactgataccatccacagacttactcaggtctcatcggttccacatgtacttccc
i panTro4.chr15             C 0 I 10
s ponAbe2.chr15              79915769 177 +  99152023 aattgtggattttcatgctgttgtcagaaataata--gagagagggcctgtatagccttcatccatttcccccag-tg----gtaacatcttgcatgactagagcacagtatcccaatcaggaaactgacactgataccatccacagacttactcagatctcatcagttccacacgtacttccc
i ponAbe2.chr15             C 0 I 1963
s nomLeu3.chr6               22702367 177 - 121039945 aattgtagattttcatgctattgtcagaaataaca--gagagagggcctgtatggctttcatccttttcccccag-tg----gtaacatcttgcatgattagagcacagtatcccaaccaggaaactgacactgataccatccacagacttactcagatctcatcagttccacacgtacttccc
i nomLeu3.chr6              C 0 I 12
s rheMac3.chr7              112807141 181 - 170124641 aattgtggattttcatgctgttgtcaaaaataata--gagagagggcctctatagccttcatccatctctcccag-tggtaagtaacatcttgcatgactagagcacagtatcccaaccaggaaactgacactgataccatccgcagacttcctcagatatcattagttccacacgtactgccc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61586731 177 + 171882078 aattgtggatcttcatgctgttgttagaaataata--gagagagggcatgtatagccttcatccatctcccccag-tg----gtaacatcttgcatgactagagcacagtatcccaaccaggaaactgacactgataccatccacagacttcctcagatatcattagttccacacgtactgccc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108901740 181 - 162156779 aattgtggATTTTCATGCTGTTGTCAAAAATAATA--GAGAGAGGGCCTCTATAGCCTTCATCCATCTCCCCCAG-TGGTAAGTAACATCTTGCATGACTAGAGCACAGTATCCCAACCAGGAAACTGACACTGATACCATCCGCAGACTTCCTCAGATATCATTAGTTCCACACGTACTGCCc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1314790 177 +  24206276 aattgtggatcttcatgctgttgttagaaataata--gagagagggcatgtatagccctcatccatctcccccag-tg----gtaacatcttgcatgactagagcacagtatcccaaccaggaaactgacactgataccatccacagacttcctcagatatcattagttccacacgtactgccc
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113732067 177 - 132174527 aattgtggattcttgtgctgttgtcagaaatgatatggacagtgggcctgtatggcctccacgcat-tccccctg-cg----gtaacagttttcatgactagaatacaggatcccagccaggaaactgacactgatg-catacacagacttactcagactttgtcagttccacacacacttccc
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90178309 165 + 124595110 aatagcgggctctcgtgctattgtcataagcaatg--cagaa-----ccaccttgcagccacccaggctctcca--cg----gtcatgccttgtccagtgatgtttggataactcaagcaggaagtggacagaggtgtaacccaaaggtgtgttcagggctcactggttctgcgtgtc------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58197185 126 +  91889043 AGTCATGGATTCTCCTAGAACCCTCAGAAACCACA--GGCAC------------GCCTTCGCCCATCCTTCCCAG-GG----CTCGTGCTGGACATCA-TAGAGTGCAACACTCTGACCAGGGCACGGGCACGGGT-------------TTCCCCGGGT-------------------------
i canFam3.chr3              C 0 C 0

a score=910.000000
s hg38.chr15_KI270850v1_alt     15256 1 +    430880 t
s panTro4.chr15              79970362 1 +  99548318 t
i panTro4.chr15             I 10 C 0
s nomLeu3.chr6               22702556 1 - 121039945 t
i nomLeu3.chr6              I 12 C 0
s mm10.chr9                  90178474 1 + 124595110 t
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58197311 1 +  91889043 T
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113732244 0 - 132174527 C
e chlSab2.chr29               1314967 0 +  24206276 C
e papAnu2.chr7              108901921 0 - 162156779 C
e macFas5.chr7               61586908 0 + 171882078 C
e rheMac3.chr7              112807322 0 - 170124641 C
e ponAbe2.chr15              79915946 1963 +  99152023 I

a score=96056.000000
s hg38.chr15_KI270850v1_alt     15257 47 +    430880 --gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcagttctgtg
s panTro4.chr15              79970363 47 +  99548318 --gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcagttctgtg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79917909 47 +  99152023 --gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcagttctgtg
i ponAbe2.chr15             I 1963 C 0
s nomLeu3.chr6               22702557 47 - 121039945 --gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcagttctttg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112807322 32 - 170124641 -----------------tttgtgtgaatgtgtatgtattcagttctgtg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61586908 32 + 171882078 -----------------tttgtgtgaatgtgtgtgtattcagttctgtg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108901921 32 - 162156779 -----------------tttgtgtgaatgtgtgtgtattcagTTCTGTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1314967 32 +  24206276 -----------------tttgtgtgaatgtgtgtgtattcagttctgtg
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113732244 38 - 132174527 -----------tttgtgtgtacatgtgtgtttgtgtattcagttctatg
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90178475 47 + 124595110 --gtgagtgtatgtgtgtgtgcatgtgtgtgtatgtagtatgtggtgtg
i mm10.chr9                 C 0 I 530
s canFam3.chr3               58197312 40 +  91889043 GGGTTTGTCCAGCTGGGTTTGTGTATATGTGT---------GCTTCATG
i canFam3.chr3              C 0 C 0

a score=435213.000000
s hg38.chr15_KI270850v1_alt     15304 143 +    430880 cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtcccatcagaaggatgtctcgtgctacccgtttatagtcacagccaccttcct-----------ccctcctcccctaacctccggcaactgctgatctg
s panTro4.chr15              79970410 143 +  99548318 cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtcccatcagaaggatgtctcgtgctacccgtttatagtcacagccaccttcct-----------ccctcctcccctaacctccggcaactgctgatctg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79917956 143 +  99152023 cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtcccatcagaaggatgtctcgtgctacccgtttatattcacagccaccttcct-----------ccctccttccctaacctccggcaactgctgatgtg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22702604 143 - 121039945 cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtcccatcagcaggatgtctcgtgctacccatttatagtcacagccaccttcct-----------gcctcctcacctaacctccggcaactgctgatctg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112807354 143 - 170124641 cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatcagaaggatgtctcgtactaccagtttatagtcacagccaccttcct-----------ccctcctcccctaacctctggcaactgctgatcta
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61586940 143 + 171882078 cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatcagaaggatgtcttgtactaccagtttatagtcacagccaccttctt-----------ctctcctcccctaacctctggcaactgctgatctg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108901953 143 - 162156779 CAGTTTCATCAC---TGTGGGTTCACCTACCCACCCCCACAGTCTAGATACAGATCTGTCTCATCAGAAGGATGTCTCGTACTACCAGTTTATAGTCACAgccaccttcct-----------ccctcctcccctaaCCTCTGGCAACTGCTGATCTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1314999 140 +  24206276 cagtttcatcat---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatcagaaggatgtcttgtactaccagtttatagtcacagccacct---t-----------ctctcctcccctaacctctggcaactgctgatctg
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113732282 131 - 132174527 cggtgtcatccc--ttgtgggttcacctacccacc------gcatag-tacagatctgtcccttgagaaggatgtcttgtgccatgtgttcatagtcacaaccaccttcct-----------ccctcctcccGTAACTT------GCAGCCCATCTG
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58197352 156 +  91889043 CACGTTTGTCACACGTGTGAGTCCCGGCATCTACC-CTGCGGGCTGGATCCAGGGCAGGCCCATTAGAAGGAGCTCTCAGGCTGCAGTCTCACAGCCAAAGCCGCCCTCCTCGGCCCCGGCCCCATCCTTGCCCCACCTTGGACAACTGCAGATCTG
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90178522 530 + 124595110 I

a score=105661.000000
s hg38.chr15_KI270850v1_alt     15447 29 +    430880 tccAGAGGCAGTTA-TTTTCCCTC-----------------------TGCTGG
s panTro4.chr15              79970553 29 +  99548318 tccAGAGGCAGTTA-TTTTCCCTC-----------------------TGCTGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79918099 29 +  99152023 tGCAGAGGCAGTTA-TTTTCCCTC-----------------------TGCTGG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22702747 29 - 121039945 tccAGAGGCAGTTA-TTTTCCCTC-----------------------TGCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112807497 29 - 170124641 tccAGAGGCAGTTA-TTTTCCCTC-----------------------TGCTGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61587083 29 + 171882078 tccAGAGGCAGTTA-TTTTCCCTC-----------------------TGCTGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108902096 29 - 162156779 TCCAGAGGCAGTTA-TTTTCCCTC-----------------------TGCTGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1315139 29 +  24206276 tccAGAGGCAGTTA-TTTTCCCTC-----------------------TGCTGG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113732413 30 - 132174527 TCCGGAGGCTGTTATTTTTCCCTT-----------------------TGCTGG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90179052 29 + 124595110 TCCACCTGAAGTTA-TCTTCCCTC-----------------------TACTGG
i mm10.chr9                 I 530 C 0
s canFam3.chr3               58197508 52 +  91889043 TTTGGAGGTGGTTT-Tttttctttaaagatgtatttatttattttagagctgg
i canFam3.chr3              C 0 I 126

a score=1369802.000000
s hg38.chr15_KI270850v1_alt     15476 394 +    430880 ACTCTGGCAGCT-----------------------TCTGT-CAGTGCCCCTGCT-GGATAGTAACCAAAATTATTCTGTGCAGGTCTGTGTT-------CCTGAGGGCCAAAGAGATGCCCAGTGGCTTGTGTGTGAATGAGAATACCTCCTTCCCAAGTGGCCACTGTGCTGGCCTCATGTCACAGAATGGTGGGAAGGACATCCTTTTCACTTGGGATCAACTGGGG--GTGACCCTTCCCTGG----CCTTAACTCAGGTGGGCCTGGCACT-CGCTAGGTTAGCCTGAAGGCCGCTTCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACTGGCCCTGTGAGACCCTGGGCTTGTCCCATGTGGTGGGCATGTGCCAGCTGCACCGTAGCTGC-AACATCAAGGAGGACATGGGCCTGCCGCTG
s panTro4.chr15              79970582 394 +  99548318 ACTCTGGCAGCT-----------------------TCTGT-CAGTGCCCCTGCT-GGATAGTAACCAAAATTATTCTGTGCAGGTCTGTGTT-------CCTGAGGGCCAAAGAGATGCCCAGTGGCTTGTGTGTGAATGAGAATACCTCCTTCCCAAGTGGCCACTGTGCTGGCCTCATGTCACAGAATGGTGGGAAGGACATCCTTTTCACTTGGGATCAACTGGGG--GTGACCCTTCCCTGG----CCTTAACTCAGGTGGGCCTGGCACT-CACCAGGTTAGCCTGAAGGCCGCTTCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACACTGGGCTTGTCTGATGTGGTGGGCATGTGCCACCCGCACCGTAGCTGCAAACATC-AGGAGGACATGGACCTGCCGCTG
i panTro4.chr15             C 0 M 546
s ponAbe2.chr15              79918128 394 +  99152023 ACTCTGGCAGCT-----------------------TCTGT-CAGCGCCCCTGCT-GGATAGTAACCAAAATTATTCTGTGCGGGTCTGTGTT-------CCCGAGGGTCAAAGAGATGCCCAGTGGCTTGTGTGTGAATGAGAGCACCTCCTTCCCAAGTGGCCACCGTGCTGGCCTCACGTCACAGAACGGTGGGAGGGACATCCTTTTCGCTTGGGATCAACTTGGG--GGGACCCTTCCCTGG----CCTTAGCTCAGGTGGGCCTGGCACT-CGCCAGGTTAGCCTGAAGGCCGCTTCTCTGCCTGTGTTGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGC-AGCATCAACGAGGACACGGGCCTGCCGCTG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22702776 395 - 121039945 ACTCTGGCAGCG-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAACCAAAATTATTCTGTGCAGGTCTGTGCT-------CCCCAGGGCCAAAGAGATGCCCAGCGGGTTGTGTGTGAATGAGAGCATCTGCTTCCCAAGCGGCCACTGTGCTGGCCTCATGTCATAGAATGGTGGGAGGGACATCCTTTTCGCTTGGGATCAATTCGGG--GGGTCCCTTCCCTGG----CCTTAGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAGCCTGAAGGCCGCTTCTTTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGC-AGCATCAACGAGGACACGGGCCTGCCGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112807526 395 - 170124641 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATGGTAACCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCCAGCGGATTGTGTGTGAATGAGAGCACCTGCTTCCCACGTGGCCACTGTGCTGGCCTCATGCCACAGAATGGTGGGAGGGACATCCTTTTCGCTTGGAATCAGTTCGGG--GGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAACCTGAAGGCCGCTTCTCTGCCTATGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATATGCCTGCCGCACTGCAGCTGC-AGCATCAACGAGGACACAGGCCTGCCACTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61587112 395 + 171882078 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATGGTAACCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCCAGTGGATTGTGTGTGAATGAGAGCACCTGCTTCCCACGTGGCCACTGTGCTGGCCTCATGCCACAGAACGGTGGGAGGGACATCCTTTCCGCTTGGAATCAGTTCGGG--GGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTAGCACTGGGCCAGGTTAACCTGAAGGCTGCTTCTCTGCCTATGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATATGCCTGCCGCACTGCAGCTGC-AGCATCAACGAGGACACAGGCCTGCCACTG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108902125 395 - 162156779 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAAGCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAAGGCCAAAGAGATGCCCAGCGGATTGTGTGTGAATGAGAGCACCTGCTTCCCACGTGGCCACTGTGCTGGCCTCATGCCACAGAACGGTGGGAGGGACATCCTTTTCGCTTGGAATCAGTTCGGG--GGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAACCTGAAGGCCGCTTCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTCTCCCATGTGGCGGGCATGTGCCAGCCACACCGCAGCTGC-AGCATCAACGAGGACACAGGCCTGCCGCTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1315168 390 +  24206276 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAACCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCTAGTGGATTGTGTGTGAATGAGAGCACCTGCTTCCCACGTGGCCACTGTGCTGGCCTCATGCCACAGAACGGTGGGAGGGACATCCTTTCCGCTTGGAATCAGTTCGGG-------CCTTCCCTGG----CCTTCGCTCAGGTGGGCCTAGCACTGAGCCAGGTTAACCTGAAGGCCACTTCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATATGCCTGCCGCACTGCAGCTGC-AGCATCAACGAGGACACAGGCCTGCCACTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113732443 398 - 132174527 ACTCTGGTAGCT-----------------------TCTGT-CCGCGCCCCTGCTGGGACAGTAACCAGAATTGTTCCGTGCGGTCCTGTGCT-------TTTGAGTCCCAAATAGATGTCCAGTGGGTGGTGTGTGAATGACAGCACCTGCTTCCCGAACGGTCACTGTGCTGGCCCGATGTCACAGAACAGTGGGAGGGACATCCTTTTCACTCGGGATCAGTGGGGGTGGTGACCCTTCCCTGG----CTTGAGCTCAGGTGGGCCTGGCACTGGACCAGGTTAGCCTGAAGGCCGCTTCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCAGCCGTGTGAGACCCTGGGCCTGTCCCACGTGTCGGGCATGTGCCAGCCGCACCGCAGCTGC-AGCATCAACGAGGACACGGGTCTGCCGCTG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90179081 359 + 124595110 GCTGGGGCAGCT-----------------------A-------------------GAAGGGTACAAAAGATTGTCCTAGGCACGTAT-TCCT-------TCTGAGGTCCCAGTGAGTGCTGTGAAGGTTGTATGTGAACAAAGGCACCTACTTTTCAAATGGCCA-TATGTGGGTCTGATGTCAGAGTGAGG-AGAAATGACACCCTAGCTGCCCGGTCTGGGGTGGCC--TGGCCTTCTCCCTGC----CCT-------------CTTGGCATTGGGCTGAGTCAGCCTG-TGACCACTTCTTT--CTCTGCAGGAAGGATTTGTGTGCGTCCATGAACCAGCCATGTGAAACCCTGGGCCTGTCTCATGTGTCTGGCTTGTGCCACCCTCAGCTCAGCTGT-AGCGTCAGTGAGGATACTGGCATGCCACTG
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58197686 388 +  91889043 actcagccagctgagctacccagggccccAAAGGCTCCGCGCAGCCCCCTCACTGGGGCAGTAACCACAACTGTGCT---CAGGTCTGTCCCCACCCCACCCCCGGCCCCAGCAGGTGTCC---------CATGTGCAGGAGGGCACC-GCCTCCCAGGT-GCAGCTGTGCTAGCAGTATGTC--TGGGTGGGAGGGGGGCTGCTGTCCTCAT------------------GCCCTCCTGCTCTGGGGCCTCTCTGCTCAGGTGGGCCTGGCGCTGGG----------CTGAGGGCTGC-TCTCTGCCCACGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGCGAGACCTTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCACACCGCAGCTGT-AACATCAACGAGGACACGGGCCTGCCCCTG
i canFam3.chr3              I 126 C 0

a score=26322.000000
s hg38.chr15_KI270850v1_alt     15870 11 +    430880 ACCTTCACTGT
s ponAbe2.chr15              79918522 11 +  99152023 GCCTTCACTGT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22703171 11 - 121039945 GCCTTCACTGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112807921 11 - 170124641 GGCTTCACTGT
i rheMac3.chr7              C 0 I 10
s macFas5.chr7               61587507 11 + 171882078 GGCTTCACTGT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108902520 11 - 162156779 GCCTTCACTGT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1315558 11 +  24206276 GGCTTCACTGT
i chlSab2.chr29             C 0 I 10
s calJac3.chr10             113732841  8 - 132174527 GCCTTCAC---
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90179440 10 + 124595110 GCCTTCACTG-
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198074 10 +  91889043 GCCTTCACCG-
i canFam3.chr3              C 0 C 0
e panTro4.chr15              79970976 546 +  99548318 M

a score=659.000000
s hg38.chr15_KI270850v1_alt     15881 36 +    430880 GATGGCCCCTGCAAGCTCACTGGCCTCAAGAACAGT
s ponAbe2.chr15              79918533 36 +  99152023 GATGGCCCCTGCAAGCTCACTGGCCTCAAGAACAAT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22703182 10 - 121039945 -------------AGCCCACGAG-------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61587518 10 + 171882078 -------------AGCCCACGAG-------------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108902531 10 - 162156779 -------------AGCCCACGAG-------------
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113732849 16 - 132174527 ----------GGTGGCCCACGAGCTC----------
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90179450 11 + 124595110 ------------TGGCCCACGAG-------------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198084 11 +  91889043 ------------TGGCCCACGAG-------------
i canFam3.chr3              C 0 C 0
e chlSab2.chr29               1315569 10 +  24206276 I
e rheMac3.chr7              112807932 10 - 170124641 I
e panTro4.chr15              79970976 546 +  99548318 M

a score=263925.000000
s hg38.chr15_KI270850v1_alt     15917 107 +    430880 CTTGAGCACAGGTACCGTGCCTGCCCCTATTGCTACACTGAGAGTCGAGATTCACCCTCCCAGCCTGAGAGCACTGGGTATCCAGCCT-GTGGGTCACAAAGTCCAGG
s ponAbe2.chr15              79918569 107 +  99152023 CTTGAGCACAGGTACCGTGCCTGCTCCCATTGCTACACTGAGAGCCGAGCTTCACCCTCGCAGCCTGGGGGCACTGGGTATCCAGACT-GTGGGTCACAAAGTCCAGG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22703192 107 - 121039945 CTCGGGCACAGGTACTGTGCCTGCCCCCATTGCTACACTGAGAGCTGAGCTTCACCCTTGCAGCCTGGGGGCACCGGGTATCCAGCCT-GTGGGTCACAAAGTCCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112807942 107 - 170124641 CTCGGACACAGGTACCATGCCTGCCCCCATTGCTACACGGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCAGGTATCCAGCCT-GTGGGTCACAAAGTACAGG
i rheMac3.chr7              I 10 C 0
s macFas5.chr7               61587528 107 + 171882078 CTCGGGCACAGGTACCATGCCTGCCCCCATTGCTACACGGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCAGGTATCCAGCCT-GTGGGTCACAAAGTACAGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108902541 107 - 162156779 CTCGGGCACAGGTACTGTGCCTGTCCCCATTGCTACACAGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCGGGTATCCAGCCT-GTGGGTCACAAAGTACAGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1315579 107 +  24206276 CTTGGGCACAGGTACCATGCCTGCCCCCATTGCTACACTGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCGGGTATCCAGCCT-GTGGGTCACAAAGTACAGG
i chlSab2.chr29             I 10 C 0
s calJac3.chr10             113732865 101 - 132174527 ---GGGCACAGGTACCGTGCCCACTCC---TGCTACACTGAGAGCTGAGCCTCACCTTCCCAACCTGGGGGCACCGGGCAGCCAGCCT-GTGGGTCACAGAGTCCGGG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90179461 105 + 124595110 CTAGGACACAGGTAACTCATCTTCCCTCACCTCTGGTTAGGAACCTGA-CTTTACCTTTTCACTCTT-GGGCACCAGCCAGCAGGGCTCCTGGGTCACGAAACCTGA-
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198095  87 +  91889043 CTTGGACACAGGTACTCCTCCCGCTGCCACAGCCGCTCTGGCATGCCAGCTTCACCTCTCCA-CTCGGGGGCAGCGGGCAGCGGGCAG--------------------
i canFam3.chr3              C 0 C 0
e panTro4.chr15              79970976 546 +  99548318 M

a score=146959.000000
s hg38.chr15_KI270850v1_alt     16024 79 +    430880 GGAAAGGAAGCTCTCTGGAGAAGAAGCCCCGACTGTCTGGCCATGTGCTGCCCCTGCACTGTGCCCTCCCCACAACCAG
s ponAbe2.chr15              79918676 79 +  99152023 AGCAAGGAAGCTCTCTGGAAAAGGAGCCCCGACCGTCTGGCCATGTGCTGCCCCTGCACTGTCCCCTCCCCACAACCAG
i ponAbe2.chr15             C 0 I 3
s nomLeu3.chr6               22703299 78 - 121039945 GGAAAGGAAGCTCTCTGGAAAAGGAGCCCCGACTGTCTGGCCATGTGCTGCCCCTGCACTGTCCCCTCCCCA-AACCAG
i nomLeu3.chr6              C 0 I 3
s macFas5.chr7               61587635 77 + 171882078 GGAAAGGAAGCTCTCTGGAGAAGGAGCCCCGACTG--TGGCCATGTGCTGTCCCTGCACTGTCCCCTCCCCACAACCAG
i macFas5.chr7              C 0 I 3
s papAnu2.chr7              108902648 77 - 162156779 GGAAAGGAAGCTCTCTGGAGAAGGAGCCCCGACTG--TGGCCATGTGCTGTCCCTgcactgtcccctccccacaaccAG
i papAnu2.chr7              C 0 I 3
s chlSab2.chr29               1315686 77 +  24206276 GGAAAGGAAGCTCTCTGGAGAAGGAGCCCCGACTG--TGGCCATGTGCTGTCCCTGCAGTGTCCCCTCCCCACAACCAG
i chlSab2.chr29             C 0 I 3
s calJac3.chr10             113732966 73 - 132174527 GGATAGGAAACACTCTGGAGAAGGAGCCCAGC-----TGGCCACATGCTG-CCCTGCACTGTCCCCTCCCCACAACCAG
i calJac3.chr10             C 0 I 3
s mm10.chr9                  90179566 71 + 124595110 GGGAGTAAAACAGTTTGGGGTTACAGTTCCAA--------CCACAAAATGCCCCAGCATTGTCTCAGTTCCTCAGCAAG
i mm10.chr9                 C 0 I 3
s canFam3.chr3               58198182 66 +  91889043 AGGAAGGCAGCCCGCC----------CCCCCACC---TGGCCATGCGCTGTGCCTGCACTGTCCCCACCACACAGCCGG
i canFam3.chr3              C 0 C 0
e rheMac3.chr7              112808049  0 - 170124641 C
e panTro4.chr15              79970976 546 +  99548318 M

a score=462607.000000
s hg38.chr15_KI270850v1_alt     16103 178 +    430880 GCT--TCCCTGTTAAACAGGAGAGAGTCCTGCCTGGGCATCTCTGGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCTGGAAAGTCATTGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTCAGTGCTGTAT-TTTTTACTCTCGAtccc--tgtccctg--ttcctgttt
s panTro4.chr15              79971522 177 +  99548318 GCT--TCCCTGTTAAA-AGGAGAGAGTCCTGCCTGGGCATCTCTGGGACTGGCCTGGAGGGAGTCTAATTTAAAGGGGAGTTGTGATGGGCCGGAAAGTCACTGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTCAGTGCTGTAT-TTTTTACTCTCGATCCC--TGTCCCTG--TTCCTGTtt
i panTro4.chr15             M 546 C 0
s ponAbe2.chr15              79918758 178 +  99152023 GCT--TCCCTGTAAAGCAGGAGAGAGGCCTGCCTGGGCATCTCTAGGACTGGCCTGGAGGGAGTCTTATATAAAGGGGAGTTGTGATGGGCTGGAAAGTCATCATAGGTCTTTGGCTGTCCCTCCGCATTGCCCTCAGTGCTGTAT-TTTTTACTCTCGATCcc--catccctg--ttcctgttt
i ponAbe2.chr15             I 3 C 0
s nomLeu3.chr6               22703380 178 - 121039945 GCT--TCCCTGTAAAGCAGGAGAGAGGCCTGCCTGGGCATCTCTAGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATTGTAGGTCTTTGGCTGTCCCTCCCCAATGCCCTCAGTGCTGTAT-TTTTTACTCTCGATCcc--cgtccctg--ttcctgttt
i nomLeu3.chr6              I 3 C 0
s macFas5.chr7               61587715 178 + 171882078 GCT--TCCCTGTAAAGCAGGAGAGAGGCCTGCCTGGGCATCTCTGGGACTGGCCTGGAGAGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATCGTAGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGCTGTAT-TTTTTACTCTCGAtccc--tgtccctg--ttcctgttt
i macFas5.chr7              I 3 C 0
s papAnu2.chr7              108902728 177 - 162156779 GCT--TCCCTGTAAAGCAGGAGAGAGGCCTGCCTGGGCATCTCTGGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGAT-GGCCAGAAAGTCATCGTAGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGCTGTAT-TTTTTACTCTCGATCCC--TGTCCCTG--TTTCTGttt
i papAnu2.chr7              I 3 M 557
s chlSab2.chr29               1315766 178 +  24206276 GCT--TCCCTGTAAAGCAGGAGAGAGGCCTGCCTGGGCATCTCTGGGACTGGCCTGGAGGGAGTCTTATCTAAAGAGGAGTTGTGATGGGCCAGAAAGTCATCGTAGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGCTGTAT-TTTTTACTCTCGAtccc--tgtccctg--ttcctgttt
i chlSab2.chr29             I 3 C 0
s calJac3.chr10             113733042 177 - 132174527 GCT--TCCCTGTTAAGCAGGAGAAAGGCCCACCTAGGCATCTCT-GGACTGGCCTGGTGGGAGTCTTATTTAAACCGGGGTTGTGATGGGCGGGCAGGTCATCGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTTAGGGCTGTAT-TTTTTACTCACAATCcc--catccctg--ctcctgttt
i calJac3.chr10             I 3 C 0
s mm10.chr9                  90179640 168 + 124595110 GTT--CCCCTAT-GAGTGGGAGAGAGGGCTGCTGGGGCATCACCGAGACCCATCTGTAGCATGTCATGT---GGGAGGAGTGGGGAT-GGCCAGTCAGT--GTGTGGAGCCTTGGCCACCTTTCTC----GCCCTAGGTGCTGGCTCTTTTTCCTCCTGTCACT--TGCTTCCA--TTCCTGCCT
i mm10.chr9                 I 3 C 0
s canFam3.chr3               58198248 178 +  91889043 GCTGCTCTCTGTCCGGTGGGGGAGAGGCCGGCCC-GGTACCTCTGGGGCTGGCTC----AGAGTCTCATTTCTAGTGGCGTTGAGCTAGCCAGAGTCATCAGCACAGGGCATCAGCTGCCCCTGCACACTGTTCTC-GTGCTTGCA-TGTTGACCCTTGGTCCCGGCACACCTGAATTCCCAACT
i canFam3.chr3              C 0 C 0
e rheMac3.chr7              112808049   0 - 170124641 C

a score=284432.000000
s hg38.chr15_KI270850v1_alt     16281 141 +    430880 gctctgtggcctggg-ccagtgc-c-tgccctctctgggcctctgtgtgcttcccatagattgaggggtttggattcagtgatgtccaaggctccctctatctgacaCCGCTGCCTAAGGCTCCTGTCTTCACAGGCCTCCAGC
s panTro4.chr15              79971699 141 +  99548318 gctctgtggcctgag-ccagtgc-c-tgccctctctgggactctgtgtgcttcccatagattgaggggtttggattcagtgatgtccaaggctccctccatctgacaCCGCTGCCTAAGGATCCTGTCTTCACAGGCCTCCAGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79918936 141 +  99152023 gctctgtggcctggg-ccagtgc-c-tgccctctctgggcctctgtgtgcttcccatagattgaggggtttggattcagtgatgtccaaggctccctccatctgacaCCGCTGCCTGAGGCTCCTGTCTTCACAGGCCTCCAGC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22703558 141 - 121039945 gctctgtggcctggg-ccagtgc-c-tgccctctctgggcccctgtgtgcttcccatagattgaggggtttggattcagtgatgtccaagtctccctccatctgacactGCTGCCTGAGGCTCCTGTCTTCACGGGCCTCCAGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61587893 141 + 171882078 gctctgtggcctggg-ccagtgc-c-tgccctctctaggcctctgtgtgcttcccatagattgaggggtttggattcagtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGCTCCTGCCTTCACAGGCCTCCAGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1315944 141 +  24206276 gctctgtggcctggg-ccagtgc-c-tgccctctctaggcctctgtgtgcttcccatagattgaggggtttggattcagtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGCTCCTGCCTTCACAGGCCTCCAGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113733219 136 - 132174527 actatgtgggctagg-ccagtgc-c-taccctctctgggcctgtgtgagcttcccataga-tgagggggttggattcagcgatgtccaagg-tccctCTGTCTG---CTgccgcctgaggctcctgtcttcacatgcccccagc
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90179808 112 + 124595110 GCTCTGTGACCCTGG-CAAGTGT-CATGTCCTTTCTGGGCCTTTGTGGGCTCCATATAGACAGAGGAGGCTAGATATAGTGGTGCC-------ACCTCTGCCTGTCCCCTGTGCCT------------TTTAC-----------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198426 112 +  91889043 GCTCTGTGACCCCAGCCCAGTGCTC-TGTCCTCTCTGGACCTCT----GCTCCCCGGTGA-GCAGGGGCTTGGATTCAGTGATGGCT--------------------------CCTGGGTCTCCGTGTGGCCCATGCCCTCGGC
i canFam3.chr3              C 0 C 0
e papAnu2.chr7              108902905 557 - 162156779 M
e rheMac3.chr7              112808049   0 - 170124641 C

a score=708.000000
s hg38.chr15_KI270850v1_alt     16422 3 +    430880 CAC--
s panTro4.chr15              79971840 3 +  99548318 CAC--
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79919077 3 +  99152023 CAA--
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22703699 3 - 121039945 CAC--
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112808049 3 - 170124641 CAC--
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61588034 3 + 171882078 AAC--
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1316085 3 +  24206276 AAC--
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113733355 3 - 132174527 cac--
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90179920 3 + 124595110 CAC--
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198538 3 +  91889043 --TGG
i canFam3.chr3              C 0 C 0
e papAnu2.chr7              108902905 557 - 162156779 M

a score=329557.000000
s hg38.chr15_KI270850v1_alt     16425 188 +    430880 CTGTGCCCTGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCTAGAAAGCCATCA--AAGGCAGGCTCCCAGAGGGTTCTGTGGGTCAAAGCTGTTGGGGTCATCCATTCAGATGTCCGGGTTTTGTGGGTGATGGCCGTGCCTGCAGGACCTTGAAGCTGCTTATGGCTGCAGAAAGAACAG
s panTro4.chr15              79971843 187 +  99548318 CTGTGCCCTGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCTAGAAAGCCATCA--AAGGCAGGCTCCCAGAGGGTTCTGTGGGTCAAAGCTGTTGGGGTCATCCATTCAGATGTCCTGGTTTTGTGGGTGATGGCCGTGCCTGCAGGACCTTGAAGCTGCTTATGGC-GCAGAAAGAACAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79919080 188 +  99152023 CTGTGCCCGGGCTGTTGAGCTGGCAAATATGGCAGCATCTTAGATTGTCTAGCAAGCCATCA--AAGGCAGGCTCCCAGAGCATTCTGTGGGTCAAAGCTGTTGGGGTCATCCATTCAGACGTCCGGGTTTCGTAGGTGATGGCTGTGCCTGCAGGACCTTGAAGCTGCTTATGGCTGCAGAAAGAACAG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22703702 188 - 121039945 CTGTGCCTGGGCTGTTGAGCTGGCAAATATGGCAGCATCTTAGATTGTCCAGCAAGCCATCA--AAGGCAGGCTCCCAGAGGGTTCTGTGGGTCAGAGCTATTGGGGTCATCCATTCAGACGTCCGGGTTTCGTGGGTGATGGCCGTGCCTGCAGGACCTTGAAGCTGCTTATGGCTGCAGAAAGAATAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112808052 187 - 170124641 TTGTGCCCGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGCTTTCA--AAGGCAGGCTCCCAGAGGGTTCTAT-CGTCAAAGCTGTTGGGGCCATCCATTCAGATGTCCGGGTTTCGTGGGTGATGGCCGTGCCTGCAGGACCTTAAAGCTGCCTATGGCTGCAGAAAGAACAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61588037 187 + 171882078 CTGTGCTTGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGCTTTCA--AAGGCAGGCTCCCAGAGGGTTCTGT-GGTCAAAGCTGTTGGGGTCATCCATTCAGATATCCGGGTTTCCTGGGTGATGGCTGTGCCTGCAGGACCTTAAAGCTGCTTATGACTGCAGAAAGAACAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1316088 187 +  24206276 CTGTGCTTGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGTTTTCA--AAGGCAGGCTCCCAGAGGGTTCTGT-GGTCAAAGCTGTTGGGGTCATCCATTCAGATGTCTGGGTTTCCTGGGTGATGGCTGTGCCTGCAGGACCTTAAAGCTGCTTATGACTGCAGAAAGAACAA
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  90179923 127 + 124595110 CTGTGCCGGGGTTGGCGAGCGGGTGAACA------------GGATTGT--ACCAAAGCTTCATTGAGCAAGGCTCCCAGAGAGCTCTGTGGGCCAGAGGGTTTGGA--------------------------CTGGGTGACAGCCATGCCTG--------------TGTTGGTGACTCCAG---------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198541 113 +  91889043 CTATGCCCAGGCTGTTCAGACGGTCAGGA-----------------------------ACCG--ATGCCGGTGCGCCACAGG-----------CAGGTCTGCT-----------TTCAGGGGCTTGGGCT------------------CATGCAGGC-----AAGCCACC-GTGGTGGTGGAATGAGCAc
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113733358   0 - 132174527 C
e papAnu2.chr7              108902905 557 - 162156779 M

a score=324075.000000
s hg38.chr15_KI270850v1_alt     16613 128 +    430880 CCTGCCGCAGTActacaatttcctggctgtgttaccctggctagttccttagactctctgagccttcctgagggtaataatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccc-g
s panTro4.chr15              79972030 128 +  99548318 CCTGCCGCAGTActataatttcctggctgtgttaccctggctggttccttagactctctgagccttcctgagggtaataatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccc-g
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79919268 129 +  99152023 CCTGCCGCAGTActgcagtttcctggctgtgttaccctggctagttccttagaatctctgagcctccctgagggtaataatgagaactgattgagattgtgtttctc-aaagtgcttaccatggcccctg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22703890 130 - 121039945 CCTGCCACAGTActgcaatttcctggctgtgttactctggctagttccttagactctctgagcctccctgtgggtaataatgagaactgagtgagattgtgtttctgaaaagtgcttagcatggcccctg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112808239 128 - 170124641 CCTGCCGCAGTActgcaatttcctggctgtgttaccctggctagttccttagactctctgagcctccctgggggtaataatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccct-
i rheMac3.chr7              C 0 I 1
s macFas5.chr7               61588224 128 + 171882078 CCTGCCGCAGTACTGCAATTTCCTGGCTGTGTTACGCTCACTAGTTCCTCAGACTCTCTGAGcctccctgggagtaataatgagaactgagtgagattgtttttctg-aaagtgcttagcatggcccct-
i macFas5.chr7              C 0 I 1
s chlSab2.chr29               1316275 128 +  24206276 CCTGCCGCAGTACTGCAATTTCCTGGCTGTGTTACGCTCGCTAGTTCCTCAGACTCTCTGAGcctccctgggagtaataatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccct-
i chlSab2.chr29             C 0 I 1
s calJac3.chr10             113733358 126 - 132174527 cctgccacagtaccgtagtttcctggctctgttaccctggctagttccataga--ctctgagcct-cctgggggtaataatgagaactgagtgagattctgtttctg-aaaggacctagcatggctcctg
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90180050  95 + 124595110 -----------------TCCTCCTGGCTGTGTTACTCTGGCAGGCTCTACAGCCTCTCTGAGGCTCTCTGAG----ATGGTGAGGACTGAGTGAGTTAGTATTATCA-TGAGTCCTG-------------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198654 115 +  91889043 tctgccccacatctgccattcctgggctatgtt------------ccctgcgcctctctgagcccccctggg--cagttctgaggactgagcaagatggggtttctg-tgagtgcacagcacggcgccca
i canFam3.chr3              C 0 C 0
e papAnu2.chr7              108902905 557 - 162156779 M

a score=2172446.000000
s hg38.chr15_KI270850v1_alt     16741 651 +    430880 gcacatagtagatgctcaggaaa-----taatttttctCATGTCCTTCCCAAGGATGGTCTCTGGAGA-CCTTTCTGTGATACAGCAGCTCAGAT-GCCTTAACTCAAGTGCACAGCCTTGGGACAAGGACCTGTGAGTGGGAACCGCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCACATCTGTGCCACCTGATTTGCCATTGCTGGCCAGTCCCCGG-GCTGGAGCAGGGCTGCTCTGGGTCCCTGGCC---CTCATTTCAGGCtcaggc---------cggagtaggagcccttgggatactagctgtcataccctcattttacattaa-agaaactgaggctcagcga-gagaatgtgactttctcaa------ggc--tgtggccattgagtggcacaac--cagccctgggaactaggactATGCACCTTGTGGTTCTCCAGGGTAGGGCAGGCTAGAAGCCTCCCGCCGGCTTACCCGCCCTTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGATGGAAGCAGCAATGACTGTGAACCCATT-GGAAACAGCCTTTCATCATGTTTCCACAGCTCCCGTACGAC---GCCGCTCCCCTCACCTGGTCCTGCTGCAGCTGCCAGTACATCACCAGGTTCCTTGAGTAAGTCC
s panTro4.chr15              79972158 651 +  99548318 gcacatagtagatgctcaggaaa-----CAATTTTTCTCATGTCCTTCCCAAGGATGGTCTCTGGAGA-CCTTTCTGTGATACAGCAGCTCAGAT-GGCTTAACTCAAGTGCACAGCCTTGGGACAAGGACCTGTGAGTGGGAACCGCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCACATCTGTGCCACCTGATTTGCCATTGCTGGCCAGTCCCCAG-GCTGGAGCAGGGCTGCTCTGGGTCTCTGGCC---CTCATTTCAGGCTCAGGC---------CAGAGTAGGATCCCTTGGGATACTAGCTGTCAtaccctcattttacattaa-agaaactgaggctcagcga-gagaatgtgactttctcaa------ggc--tgtggccattgagtggcacaac--cagccctgggaactaggactATGCACCTTGTGGTTCTCCAGGGTAGGGCAGGCTAGAAGCCTCCCGCCGGCTTACCTGCCCTTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGATGGAAGCAGCAATGACTGTGAGCCCATT-GGAAACAGCCTTTCATCATGTTTCCACAGCTCCCGTACGAC---GCCGCTCCCCTCACCTGGTCCTGCTGCAGCTGCCAGTACATCACCAGGTTCCTTGAGTAAGTCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79919397 651 +  99152023 gcacatagtagatgctcaggaaa-----taatTTTTCTCATGTCCTTCCCAAGGATGGTCTCTGGAGA-CCTTTCTGTGATACAGCAACTCAGAT-CCCTTAACTCAAGTGCACAGCCTTGGGACAAGGACCTGTGAGTGGGAACCGCTGTCAGACTGTTCTTGAGGCTAGTGAGCTTGCAGGG------------GCCATC-ACAGGCCCCCATCTGTGCCACCTGATTTGCCATTGCTGGCCAGTCCCCGG-GCTGGAGCAGGGCTTCTCTGGGTCCCTGGCC---CTCATTTCAGGCtcaggc---------cggagcagaagcccttgggatactagctgtcataccctcattttacattaa-agaaactgaggctcagcga-gagaatgtgactttctcaa------ggc--tgtggccattgggtggcacaga--cagccctgggaactaggactGTGCACCTTGTGGATGTCCAGGGGAGGGCAGGCTGGCAGCCTCCTGCTGGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCGGCATGACGGAAGCAGCAATGACTGTGAGCCTGTT-GGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAGTCC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22704020 650 - 121039945 gcacatagcagatgctcaggaaa-----taatTTTTCTCATGTCCTTCCCAAGGATGGTCTCTGGAGA-CCTTTCTGTGATACAGCAGCTCAGAT-CCCTTAACTCAAGTGCACAGCCCTGGGACAAGGACCTGTGAGTGGGAACCGCTGTCAAACTATTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCACATCTGTGCCACCTGATTTGCCATTGCTGGCCGGCCCCCAG-GCAGGGGCAAGGCTGCTCTGGTTCCCTGGCC---CTCatttcaggct---------------ggagcaggagcccttgggatactagctgtcataccctcattttacattca-ggaaactgaggctcagagaggggaatgtgactttctgcggccattggg--tgtagccattgggtggcagaac--cagccctgggaactaggactGTGCACCTCGTGGGTGTCCAGGGGAGGGCAGGCTGGCAGCCTCCCGCCGGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCCGTTGGGAAACGACCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG---
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112808368 649 - 170124641 gcacatggtagatgctcaggaaa-----taatTTTTCTCGTGTCCTTCCCAAGGATGGTCTCTGGAGA-CCTTTCTGTGACACAGCAGCTCAGAT-CCCCTAACTCAAGTGCACAGCCTTGGGACAAGGACCTGTGAGTGGGAACCTCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCCCCCAG-GCAGGGGCAGGGCTGCTCTGGGTCCCTGGCC---CTCatttcaggct---------------ggagcaggagcccttggggtcctagctgtcataccctcattttacattaa-ggaaactgaggctcagagaggggaatgtgactttctgcagccattggg--tgtggccattgggtggcagaac--cagccct-ggaaTTAGGGCTGTGCCCCTTGTGGGTCTCCAGGGGAGGGCAGGCTGGCAGCCTCCCGCCAGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAACCCATTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCTCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG---
i rheMac3.chr7              I 1 C 0
s macFas5.chr7               61588353 561 + 171882078 gcacatagtagatgctcaggaaa-----taatttttCTCGTGTCCTTCCCAAGGATGGTCTCTGGAGA-CCTTTCTGTGACACAGCAGCTCAGAT-CCCTTAACTCAAGTGCACAGCCTTGGGACAAGGACCTGTGAGTGGAAACCTCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCCCCCAG-GCAGGGGTAGGGCTGCTGTGGGTCACTGGCC---CTCATTTCAGgcc---------------agagcaggagcccct-ggatcctagctgtcataccctcattttacattaa-ggaaa------ctcagaga-gggaatgtgactttctcaa------ggc--tgcggccattgggtg-------------------------------------------------------------------gcCTCCCGCCAACTCGCCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAACCCATTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCCCACCTGGTCCCACTGCAGCCGCCAGTATA----------CCTTGAGGTAG---
i macFas5.chr7              I 1 C 0
s papAnu2.chr7              108903462 649 - 162156779 gcacatagtagatgctcaggaaa-----taatttttctcGTGTCCTTCCCAAGGATGGTCTCTGGAGA-CCTTTCTGTGACACAGCAGCTCAGAT-CCCCTAACTCAAGTGCACAGCCTTGGGACAAGGACCTGTGAGTGGGAACCTCTGTCAGACTGTTCTTGAGGCTAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCccccag-gcaggggcagggctgctCTGGGTCCCTGGCC---CTCATTTCAGGCT---------------GGAGCAGGAGCCCTTGGGGTCCTAGCTGTCATACCCTCATTTTAcattaa-ggaaactgaggctcagagaggggaatgTGACTTTCTGCAGCCATTGGG--TGTGGCCATTGGGTGGCAGAAC--CAGCCCT-GGAATTAGGGCTGTGCCCCTTGTGGGTCTCCAGGGGAGGGCAGGCTGGCAGCCTCCCGCCAGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGATGGAAGCGGCAATGACTGTGAACCCGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCTCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG---
i papAnu2.chr7              M 557 C 0
s chlSab2.chr29               1316404 605 +  24206276 gcacatagtagatgctcaggaaa-----taatttttCTCGTGTCCTTCCCAAGGATGGTCTCTGGAGA-CCTTTCTGTGACACAGCAGCTCAGAT-CCCCTAACTCAAGTGCACAGCCTTGGGACAAGGACCTGTGAGTGGGAACCTCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCCCCCAG-GCAGGGGCAGGGCTGCTGTGGGTCCCTGGCC---CTCATTTCAGgcc---------------agagcaggagcccctgggatcctagctgtcataccctcattttacattaa-ggaaa------ctcagaga-gggaatgtgactttctcaa------ggc--tgctgccattgggtggcagaac--cagCCC----------------------TGTGGGTCTCCAGGGGAGGGCAGGCTGGCAGCCTCCCGCCAGCTCGCCCGCCTCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGATGGAAGCGGCAATGACTGTGAACCCGTTGGGAAACGGCCTTTCATCATATCTCCACAGCTCCTGTATGAC---GCCGCTCCCCCGACCTGGTCCCACTGTAGCCGCCAGTATA----------CCTTGAGTTAG---
i chlSab2.chr29             I 1 C 0
s calJac3.chr10             113733484 636 - 132174527 gcacatagtagatgctcaggaaa-----tCATTTTTCTCATGTGCTTCCCAAGAATGGTCTCAGGCGG-CCTTGCCGTGATGCAGCAGCTCAGAT-CCCTTAACTCAAGTGCACAACCTTGGTACAAGGACCTGTGAGGGGAAACATCTGTCAAACTGTTCTTCAGGCCAGTGAGCTTGCAGGG------------GCCATC-GCAGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCACCCAG-GC----------------TGGGTCCCTGGCC---CTCATTTCAGGCtcaggc---------tggagcaggagcacttgggatactggctttcattcccccattttacatgaagggaaactgaggctcagaga-gggaatgtgactttcttaa------agc--cgcgactgtt-aatggcagaac--caggcctgggaactaggacagtgtgcctTGTAGGTCTCCAGGGGAGGGCAGGCTGGCAGCCTCCCGCCAGCTCACCTGCCCCTGGGGTCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCGGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCTGCTCCCCTCACCTGGTCCCGATGCAGCCGCCAGTACATCACCAGATTCCTGGAGTAAGTCC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90180145 634 + 124595110 GTTCATAGCTGGTGCCCAGGAACGTTTTTTTTTTTTTTTGAGCCGTTCCCAAGGATGACCTCTTGAGA--CTTTCTGGG-------------GAC-CTCTTAACTCAAGTTCACAACCTGAGGTCA---------------------------------CCTTGGGGCCAGTGAGGTTGTAGGGTCGCAATAGACTTCCAGCAATAGACTTCCATATGTGTCTCCTGGATTGCCATTCTTGGCTAGCTCTGGGCACAAGAATGTGGCTG-TGAGGATCTCAAAACAGGctcatttcaggctcagcctgatccatgtagataagaaacccagggaatact-gctgtcacccccatattctgtattag-ggaaacggaggctcagaga-tactgtgtggctttctcaa------ggtcatgcagccattgggtgacagaTA------ATTGGGAATTGGGACTGTACCCCTTGCAGGCCTCCATGGGAAGGAGGCCTGGGGGCCTCCTGCT-GCTCACTCGCCCCTGGGGCCTGTGCTCTCACGCAGTTTTGGCATTCAGCATGACGGCACCGGCAATGACTGTGAATCCATTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTATGACAGAGGCATTCCTCTTACCTGGTCCCGATGCAGCCGCGAGTACATCACCAGGTTCCTTGAGTAAGTCC
i mm10.chr9                 C 0 I 1226
s canFam3.chr3               58198769 580 +  91889043 gcacgttatacgtgctgagtaaa-----tagcatttctTGTCTCCTTCCCGAGGATGCCCTCTTGAGAACTTTTCTATGACAGGGCGGCTCAGATGCCCCTCACTGCAGTGCATAGCCTCAGGCTGAGGAC----------------CCGTCAGGCTGTTCTAGGGGCCACGGAGGGTGCAGGG------------GCT----GCGGTCCCCA--CCGTGCCACCTGGCTCACCCCTGTAGG-TGCTCATCAG-GCTCGAGCAA--------------CCTGTCC---CT--------------------------GGAGGAGG-GCCCAGGGAGTAC-AGAGGTCCCA-ACACATCTTAGGTCAG-GGAGGCGGAGGCTTCCAGA--------------------------GGG--CTCAGCCTTCCTGTGGCCACACAGCAGTTTGAGGGTTTGGTGGATTCGTGCCAGCAGGCCTGCGGGAAGGGGCGGGCTGGCGGCTTCCC-TCGGCTCACTCGCCCCTGGGGCCTGTGCTCTCACGCAGCTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGCGAGCCCATTGCGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---ACTGTCCCCCTCACCTGGTCCCGTTGCAGCCGAGAGTACATCACCAGGTTCCTGGAGTAAGGCC
i canFam3.chr3              C 0 C 0

a score=16697.000000
s hg38.chr15_KI270850v1_alt     17392 6 +    430880 CTCCCC
s panTro4.chr15              79972809 6 +  99548318 CTCCCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920048 6 +  99152023 CTCCCC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22704670 5 - 121039945 -TCCCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112809017 5 - 170124641 -TCCTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61588914 5 + 171882078 -TCCTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108904111 5 - 162156779 -TCCTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1317009 5 +  24206276 -TCCTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113734120 6 - 132174527 TTCCCC
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58199349 6 +  91889043 CACCCC
i canFam3.chr3              C 0 I 5254
e mm10.chr9                  90180779 1226 + 124595110 I

a score=60584.000000
s hg38.chr15_KI270850v1_alt     17398 22 +    430880 CAGCCCTGAGCCCCTACGCCTT
s panTro4.chr15              79972815 22 +  99548318 CAGCCCTGAGCCCCTACGCCTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920054 22 +  99152023 CAGCCCTGAGCCCCTACGCCTT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22704675 22 - 121039945 cagccctgggcccctatgcctt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112809022 22 - 170124641 CAGCACCGGGCCCCTGCGCCTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61588919 22 + 171882078 TAGCACCGGGCCCCTACGCCTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108904116 22 - 162156779 CAGCACCGGGCCCCTGCGCCTT
i papAnu2.chr7              C 0 I 81
s chlSab2.chr29               1317014 22 +  24206276 TAGCACCGGGCCCCTACTCCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113734126 22 - 132174527 CAGCCCTGGGCCCCTGTGCCTT
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e canFam3.chr3               58199355 5254 +  91889043 I

a score=111096.000000
s hg38.chr15_KI270850v1_alt     17420 55 +    430880 GATCCATGAGATCAAGGTCTAATGGGGGAGATGCAGACAGTCACACTGCAGGGTC
s panTro4.chr15              79972837 55 +  99548318 GATCCATGAGATCAAGGTCTAATGGGGGAGATGCAGACAGTCACACTGCAGGGTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920076 55 +  99152023 GATCCATGAGGTCAAGGTCTGCTGGGAGAGATGCAGACAGTCACACTGCAGGGCC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22704697 55 - 121039945 gatccatgaggtgaaggtctactgggagagatgcagacagtcatactgcagggca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112809044 50 - 170124641 AATCCATGAGGTCAAGGTCTACTGGGAGAGCTGCAGACAGTCACATTGGA-----
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61588941 31 + 171882078 GATCCATGAGGTCAAGGTCTACTGGGAGAGC------------------------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108904219 55 - 162156779 GATCTGTGAGGTCAAGGTCTAATGGGGGAGATGCAGACAGTCATACTGCAGAGCC
i papAnu2.chr7              I 81 T 86
s chlSab2.chr29               1317036 50 +  24206276 GATCCACGAGGTCAAGGTCTACTGGGAGAGCTGCAGACAGTCACATTGGA-----
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113734148 51 - 132174527 GATCCATGAGGTCAGGGTCtaatgggagaggtg----tagtcatgttgcagggct
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e canFam3.chr3               58199355 5254 +  91889043 I

a score=57235.000000
s hg38.chr15_KI270850v1_alt     17475 23 +    430880 GGGGTAGAGGGAAGCAGAGGGGC
s panTro4.chr15              79972892 23 +  99548318 GGGGTAGAGGGAAGCAGAGGGGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920131 23 +  99152023 GGGGTAGAGGGAAGCAGAGGGGC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22704752 23 - 121039945 ggggtagagggaagcagaggggc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112809094 23 - 170124641 GGGGTAGAGGGAAGCAGAGGGAC
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7              108904188 23 - 162156779 GGGGTAGAGAGAAGCAGAGGGAC
i papAnu2.chr7              T 86 C 0
s chlSab2.chr29               1317086 23 +  24206276 GGGGTAGAGGGAAGCAGAGGGAC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113734199 23 - 132174527 ggggtacaaggaagcagaggggc
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e canFam3.chr3               58199355 5254 +  91889043 I
e macFas5.chr7               61588972  0 + 171882078 C

a score=1911.000000
s hg38.chr15_KI270850v1_alt     17498 1 +    430880 A
s panTro4.chr15              79972915 1 +  99548318 A
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920154 1 +  99152023 A
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              112809117 1 - 170124641 A
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7              108904211 1 - 162156779 A
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1317109 1 +  24206276 A
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113734222 1 - 132174527 a
i calJac3.chr10             C 0 I 886
e mm10.chr9                  90180779 1226 + 124595110 I
e canFam3.chr3               58199355 5254 +  91889043 I
e macFas5.chr7               61588972 0 + 171882078 C
e nomLeu3.chr6               22704775 0 - 121039945 C

a score=9350.000000
s hg38.chr15_KI270850v1_alt     17499 7 +    430880 AGGTCTC
s panTro4.chr15              79972916 7 +  99548318 AGGTCTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920155 7 +  99152023 AGGTCTT
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              112809118 7 - 170124641 AGGTCTT
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7              108904212 7 - 162156779 AGGTCTT
i papAnu2.chr7              C 0 T 81
s chlSab2.chr29               1317110 7 +  24206276 AGGTCTT
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e macFas5.chr7               61588972 0 + 171882078 C
e nomLeu3.chr6               22704775 0 - 121039945 C

a score=94874.000000
s hg38.chr15_KI270850v1_alt     17506 160 +    430880 GATCCATGAGGTCAAGGTCTACTAGGAAAGATGCAGACAGTCATACTGCAGGGCCGTGGTAGAGGGAAGCAGAAGGGCAAGGTCTTGATCTGTgaggtcaaggtctaatgggggagatgcagacagtcatactgcagggccagggtagaaggaagcagag
s panTro4.chr15              79972923  74 +  99548318 GATCCATgagatcaaggtctaatgggggagatgcagacagtcacactgc--------------------------------------------------------------------------------------agggccagggtagaaggaagcagag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920162 160 +  99152023 GATCCGTGAGGTCAAGGTCTAACGGGGGAGATGCAGACAGTCACACTGCAGGGCCGGCGTAGAGGGAAGCAGAGGGGCAAGGTCTTGATCCATgaggtcaaggtctgctgggaaagatgcagacagtcacactgcagggccggggtagagggaagcagag
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              112809125  74 - 170124641 GATCTGTgaggtcaag-----------------------gtctaat---------------------------------------------------------------gggggagaggcagacagtcatactgcagagccggggtagagggaagcagag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61588972 124 + 171882078 ------TGCAGACA-------------------------GTCACATTGGAGGG-----GTAGAGGGAAGCAGAGGGACAAGGTCTTGATCTGTgaggtcaaggtctaatgggggagaggcagacagtcatactgcagagccggggtagagggaagcagag
i macFas5.chr7              C 0 I 1
s papAnu2.chr7              108904138 155 - 162156779 AATCCATGAGGTCAAGGTCTGCTGGGAGAGCTGCAGACCGTCACATTGGAGGG-----GTAGAGAGAAGCAGAGGGACAAGGTCTTGATCTGTGAGGTCAAGGTCTAATGGGGGAGATGCAGACAGTCATACTGCAGAGCCGGGGTAGAGGGAAGCAGAG
i papAnu2.chr7              T 81 I 1
s chlSab2.chr29               1317117  74 +  24206276 GATCTGTgaggtcagg-----------------------gtctaat---------------------------------------------------------------gggggagaggcagacagtcatactgcagagccggggtagagggaagcagag
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e nomLeu3.chr6               22704775   0 - 121039945 C

a score=1000.000000
s hg38.chr15_KI270850v1_alt     17666 1 +    430880 g
s panTro4.chr15              79972997 1 +  99548318 g
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920322 1 +  99152023 g
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              112809199 1 - 170124641 g
i rheMac3.chr7              C 0 C 0
s chlSab2.chr29               1317191 1 +  24206276 g
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e papAnu2.chr7              108904293 1 - 162156779 I
e macFas5.chr7               61589096 1 + 171882078 I
e nomLeu3.chr6               22704775 0 - 121039945 C

a score=6300.000000
s hg38.chr15_KI270850v1_alt     17667 3 +    430880 ggc
s panTro4.chr15              79972998 3 +  99548318 ggc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920323 3 +  99152023 ggc
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              112809200 3 - 170124641 ggc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               61589097 3 + 171882078 ggc
i macFas5.chr7              I 1 C 0
s papAnu2.chr7              108904294 3 - 162156779 GGC
i papAnu2.chr7              I 1 C 0
s chlSab2.chr29               1317192 3 +  24206276 ggc
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e nomLeu3.chr6               22704775 0 - 121039945 C

a score=1841378.000000
s hg38.chr15_KI270850v1_alt     17670 860 +    430880 atctggcaaaaat---gtgctggcatcccaaatgtcctcctggaagggacacttgagcttgaacttggagaaggagtgagaattcacacatgtgcagaagggagaagaatggcgttcctggtagaggaagcctgagaaaggcctgcagcggtaaaggagtgggagagctttcagggaacggcaGAACCGTAAAGGAGTGGGAGAGC-TTTCAGGGAACGGCAGAACCCTGAGCGAGGCTATGGGAGCCAAGGCTGCGTAGGAAATAAGGCTGGAGGAGGCGAGGGCCAGCCACAGTGTCCAGTGagaggcaggaagaaggggccactaagggaactgaaatacaaagctttctcctttttttcatgttctcttcacttgttctgatgttc---ttgttgttgttgtttgtttgttttttgagacagagtctcactctattgcccaggctggagtgccatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagactcctgagtagctggaactacaggcatgtgccacaatgcctggttaatttttatatttttagtagagacggggttttgtcatgttggccagactggtcttgaactcctgacctcaggtgatctgcccacctcggcctcccagagtgctggaattacaggcgtgagccaccatgcccagcctgttctgctggttttgttttgctttgttttgctttttaatttgctatttaatgttgttctaagtaagaaaaagttttacatttaaattattagcataaattttaccattcatctttattttgtgcagtgccagttttaaatgcaaatgtaagagtacagttga-ccc
s panTro4.chr15              79973001 860 +  99548318 atctggcaaaaat---gtgctggcgtcccaaatgtcctcctggaagggacacctgagcttgaacttgaagaaggagcgagaattcacacatgtgcagaagggagaagaatggcgttcctggtagaggaagcctgagaaaggcctgcagtggtaaaggagtgggagagctttcagggaacggcagaaccgtaaaggagtgggagagc-tttcagggaatggcagaaccctgagcgaggctatgggagccaaggccacgtaggaaatgaggctggaggaggcgagggccagCCACAGTGTCCAGTGagaggcaggaagaaggggccactaagggaactgaaatacgaagctttctcctttttttcatgttctcttcacttgttctgatgatc---ttgtttttgttgtttgtttgttttttgagacagagtctcgctctattgcccaggctggagtgcgatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagactcctgagtagctggaactacaggcatgcaccacaatgcctggttaatttttatatttttagtagagacggggttttgccatgttggccagactggtcttgaactcctgacctcaggtgatctgtccacctcggcctcccagagtgctggaattacaggcgtgagccaccatgcccagccTGTTCTGCTGgttttgttttgttttgttttgctttttaatttgttatttaatgttgttctaagtaagaaaaagttttacatttaaattattagcataaattttaccattcatctttattttgtgcagtgccagttttaaatgcaaatgtaagagtacagttga-ccc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79920326 818 +  99152023 atctggcaaaaat---gtgctggcatcccaaatgtcctcctggaagggacacctgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaatggcgttcctggtagaggaagcctgagaaagacctgcag--------------------------------------ccgtaaaggagcaggagagc-tttcagggaagggcagaaccctgagcgaagctatgggagccaaggctgcataggaaatgaggccagaggaggcgagggccggCCACAGTGTCCAGTGagaggcaagaagaaggggccactaagggaactgaaatacgaagctttctcctttttttcatgttctcttcacttgttctgatgttc---ttgttgttg----ttatttgttttttgagacagagtctcgctctgttgcccagactggagtgcgatggcgcaatctcggctcactgcaacctctgcctcccagtttcaagtgattctcctgcctcagcctcctgagtagctggaactacaggcatgcgccacaatgcctggctaatttttatatttttagtagagatcaggttttgccatgttggccagactggtcttgaactcctgacctcaggtgatctgcccacctcagcctcccagagtgctggaattacaggtatgagccaccatgcccagccTGTTCTGCTGgttttgctttgttttgttttgttttttaatttgctatttaatgttgttctaagtaagaaaaagttttaaatttaaattattagcataaattttaccattcatctttattttgtgcagtgccagttttaaatgcaaatgtaagagtacagttga-ccc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22704775 806 - 121039945 acctggcaaagatgtggtgctggcgtcccaaatgtcctcctggaatg-------aggcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaatggtgttgtcggtagaggaagcctgagaaaggcctgcag--------------------------------------ccgtaaaggagcgggagagc-tttcagggaagagcagaaccctgagcaaggctatgggagccaaggctgagtaggaaatgaggctggagaagGCGAGGGCCGGCCACAGTGTCCAGTGagaggcaggaagaaggggccattaaaggaactgaaatacgaagttttctcctttttttcatgttctcttcatttgttctggtgttt---ttgttgtttttgtttgtttgttttttgagacagagtctcgttctgttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcgtgtgccacaatggctggctactttttgtgtttttagtagaaatgaggttttgccatgttggccagactggtcttgaactcgtgacctcaggtgatccacccaccttggcctcccaaagtgctggaattacaggcatgagccaccatgcccagcctgttctggtggt----------tttttttttttttcaaatttgctatttaa---tattctaagtaagaaaaagttttaaatttaaattattggcataaattgtaccattcatctttattttgtgcagtgccagttttaaatgcaaatagaagagtatagctgacccc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112809203 815 - 170124641 acctggcaaagatgtggtgctggcgtcccaaatgtcctcctggaagggacacttgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggataagaatggcgttcctggtagaggaagcctgagaaaggcctgcag--------------------------------------ccgtgaagcagcgggagagcttttcagggaatggcagaaccctgagcgaggctatgggagccaaggctgcgtagaaaatgaggctggaggaagcgaggGTCGGCCACAAGGTCCAGTGagaggcaggaagaaggggccactaagggaactgaaatacgaagctttctccattttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgtttgtttattttttgagacggagtttcgctctgtcgcccaggctggagtgcgatggtgtgatcttggctcactgcaacctctgcctcccaagttcaagagattctcctgcctcagcctcctgggtagctgggactacaagtgtgcaccacaatggctgaccaatttttgtatttttagtagagataaggttttgccatgttggccagactggtcttgaactcctgacctcagatgatccacccaccttggcctcctagagtgctggaattgcaggcatgagccaccatgcctagcctattctggtg---------ttttttgttt--ttttttaatttgcgatttaatgttgttctaagtaagaaaaagttttaaatttaaattattggcataaattgtaccattcatctttattttgttcagtgccagttttaaatgcaaatataagagtatagctga-ccc
i rheMac3.chr7              C 0 I 1
s macFas5.chr7               61589100 827 + 171882078 acctggcaaagatgtggtgctggcgtcccaaatgtcctcctggaagggacacttgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggataagaatggcgttcctggtagaggaagcctgagaaaggcctgcag--------------------------------------ccgtgaaggagtgggaaaga-tttcagggaacggcagaaccctgagcaaggctatgggagccaaggctgcataggaaatgaggctggaggagacgagggccggaCACAAGATCCAGTGaaaggcaggaagaaggggccactaagggaactgaaatacgaagctttctccattttttcatgttctcttcatttgttctggtgttcttgttgttgttgttgtttgtttgtttgttgagacagaatctcactctgtctcccaggctggagtgcaatggcacaatctgggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtgggtggaactacaggtgtgtgccacagtgcctggctaatttttatatttttagtagagacagggttttgccatgttggccagactggtcttgaactcctgacctcaagtgatccacccacctcgacctcccagagtgctggaattacaggcatgagtcaccatgcccagactgttctggtgggttt-tgttgttttgttttgttttttaatttgctatttaatgttgttctaagtaagaaaaagttttaaatttaaattattggcataaattgtatcattcatctcttttttgtgcagtgccagttttaaatgcaaatataagagtatAGCTGA-CCC
i macFas5.chr7              C 0 I 1
s papAnu2.chr7              108904297 815 - 162156779 ACCTGGCAAAGATGTGGTGCTGGCGTCCCAAATGTCCTCCTCGAAGGGACACCTGAGCTTGAACTTGGAGGAGGAGCGAGAATTCACACATGTGCAGAAGGGAGAAGAATGGCGTTCCTGGTAGAGGAAGCCTGAGAAAGGCCTGCAG--------------------------------------GCGTGAAGGAGCGGGAGAGCGTTTCAGGGAATGGCAGAACCCTGAGCGAGGCTATGGGAGCCAAGGCTGCATAGAAAACGAGGCTGGAGGAAGCGAGGGTCGGCCACAAGGTCCAGTGAGAGGCAGAAAGAAGGGGCCACTAAGGGAACTGAAATGTGaagctttctcctttttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgtttgtttattttttgagacggagtctcgctctgtctcccaggctggagtgcgatggtgtgatcttggctcactgcaaccactgcctcccaggttcaagagattctcctgcctcagcctcctgggtagctgggactacaagtgtgtaccataatggctgactaatttttgtatttttagtagagataaggttttgccatgttggccagactggtcttgaactcctgacctcagatgatccacccaccttggcctcctagagtgctggaattgcaggcatgagccaccgtgcctagcctgttctggtg---------ttttttgttt--tttttaaatttgcgaTTTAATGTTGTTCTAagtaagaaaaagttttaaatttaaattattggcATAAATTGTACcattcatctttattttgttcagtgccagttttaaatgcaaatataagagtatagctga-ccc
i papAnu2.chr7              C 0 I 1
s chlSab2.chr29               1317195 824 +  24206276 acctggcaaagatgtggtgctggcatcccaaatgtcctcctggaagggacacttgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggataagaatggcgttcctggtagaggaagcctgagaaaggcctgcag--------------------------------------ccgtgaaggagtgggaaaga-tttcagggaatggcagaacgctgagcaaggctatgggagccaaggctgcataggaaatgaggctggaggaggcaagggccggaCACAAGATCCAGTGagaggcaggaagaaggggccactaagggaactgaaatacgaagctttctccattttttcatgttctcttcatttgttctggtgttc---ttgttgttgttgtttgtttgtttgttgagacagaatctcactctgtctcccaggctggagtgcaatggcacaatctgggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtgggtgcaactacaggtgtgtgccacagtgcctggctaatttttatatttttagtagagacagggttttgccatgttggccagactggtcttgaactcctgacctcaagtgatccacccacctcgacctcccagagtgctggaattacaggcatgagtcaccatgcccagactgttctggtgggttt-tgttgttttgttttgttttttaatttgctatttaatgttgttctaagtaagaaaaagttttaaatttaaattatttgcataaattgtatcattcatcttttttttgtgcagtgccagttttaaatgcaaatataagagtatAGCTGA-CCC
i chlSab2.chr29             C 0 I 12
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I

a score=15198.000000
s hg38.chr15_KI270850v1_alt     18530 9 +    430880 agaacaact
s panTro4.chr15              79973861 9 +  99548318 agaacaact
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79921144 9 +  99152023 agaacaact
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22705581 9 - 121039945 agaacaact
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112810019 9 - 170124641 tgaacaact
i rheMac3.chr7              I 1 C 0
s macFas5.chr7               61589928 9 + 171882078 TGAACAACT
i macFas5.chr7              I 1 C 0
s papAnu2.chr7              108905113 9 - 162156779 tgaacaact
i papAnu2.chr7              I 1 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019 12 +  24206276 I

a score=1171142.000000
s hg38.chr15_KI270850v1_alt     18539 956 +    430880 tgggggtcaggggtgctgacctctgtgcaactgaaaatccatgtataacttt-gactcgcccaaaactactaatagcctactgttgactggaagccttactgataacataaacagttaatacatattttgtatgttatatataatatatactatattcttacaataaagtaagctagagaaaagcaaatgttattgaaatcataaggaagaggaaatacgttcactgttaattaagtggaagtggatcatcataaagatctccatcctcatcctcttcatgttgagtacgctgaggagggaggagaaaggcagggggtgatcttcttgtcttggggtggcagaggtggaaaaaaatccacacataagtggaccc----------------cgttgttcaaaagtcagctgtattaacttgtatgcagggtaaccaaaattacacaattcgtcttttgtagctgatatttactagatgatgagatagaataaaactatctcaattggtttgatctcactccttgatatgtgcacattctacccaggctctctaccttttcttaccgatgaagatggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcagttggctaatacaggggtgttaacatgggagagaaaggatgatggggcttcttggtcattgtcttctttctgcatttgaagtaa---tggttcaaatggaaaatgcagcctctgggcctgtcagtg-ccccctgtcccttactcagttgttgacataacatgtttatc-ttctaattgctttgagtctcaccgaactcctacacattatagattctga---catggaccaaagtaaatgttagatgcaagtggggcagcaaggaatggtggacacagacactgcctgtgtctcctctgttcaaacacaggcttctttgtcccatcagaccttgcttacTg
s panTro4.chr15              79973870 957 +  99548318 tgggggtcaggggtgctgacctctgtgcaactgaaaatccatgtataacttt-gactcgcccaaaactactaatagcctactgttgactggaagccttactgataacataaacagttaatacatattttgtatgttatatataatatatactatattcttacaataaagtaagctagagaaaagcaaatgttattgaaatcataaggaagaggaaatacgttcactgttaattaagtggaagtggatcatcataaagacctccatcctcatcctcttcatgttgagtatgctgaggagggaggagaaaggcagggggtgatcttcttgtcttggggtggcagaggtggaaaaaaatccacacgtaagtggaccc----------------cattgttcaaaagtcagctgtattaacttgtatgcagggtaatcaaaattacacaattcgtcttttgtagctgatatttactagatgatgagatagaataaaactatctcaactggtttgatctcactccttgatatgtgcacattctacccaggctctctaccttttcttaccgatgaagatggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcagttggctaatacaagggtgttaacatgggtaagaaaggatgatggggcttcttggtcattgtcttctttctgcatttgaagtaa---tggttcaaatggaaaatgcagcctctgggcctgtcagtgcccccctgtcccttactcagttgttgacataacatgtttatc-ttctaattgctttgagtctcaccgaactcctacacattatagattctga---catggaccaaagtaaatgttagatgcaagtggggcagcaaggaatggtggacacagacattgcctgtgtctcctctgttcagacacaggcttctttgtcccatcagaccttgcttactg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79921153 960 +  99152023 tggggttca-gggtgctgacccctgtgcaactgaaaatccatgtataacttt-gactcgcccaaaactactaatagcctactgttgactggaagccttactgataacataaacagttaatacatattttgtatgttatatataatacatactgtattcttacaataaagtaagctagagaaaagcaaatgttattgaaatcataaggaagaggaaatatgttcactgttcattaagtggaagtggatcatcataaaggtctccatcctcatcctcttcatgttgagtaggctgatgagggaggagaaaggcagggggtgatcttgttgtcttggggtggcagaggcggaaaaaaatctacacataagtggaccc----------------cgttgttcaaaGTTCAGCTGTAttaacttgtatgcagggtaaccagaattacacaattcgtcttttgtagctgatatttactagatgatgagatagaataaaactatctcaactggtttgatctcactccttgatatgtgcacgttctacccaggctctctaccttttcttaccgatgaagatggaaagactgaaaggataaggaactatggggttctctttcctcccgtgtcttcattttctgcatagcggttggctaatacaggggtgttaacatgggtaagaaaggatgatggggctccttggtcattgtcttctttctgcatttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcagtgcccccctgtcccttactcagttgttgatataacatgtttatcaatctaattgctttgagtctcactgaacccctacacattatagattctga---catggaccaaagtaaatgtgagatgcaagtggggcagcaaggaatggtggacactgacattgcctgtgtctcctctgctcgtacacaggcttctttgtcccatcagaccttgcttactg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22705590 955 - 121039945 caggggtcaggggtgctgactcctgtgcaattgaaaatccacgtataactttcaacttgcccaaaactactaatagcctactgttgactggaagccttactgataacataaacagttaatacctattttgtatgttatatataatatatactgtattcttacaataaagtaagctagagagaagcaaatgttattgaaatcataaggaagagaaaatatgttcactgttcattaagtggaagagg------------------atcctcatcctcttcatgttgagtaggctgaggagggaggagaaaggcaggggatgatctca-------ggggtggcagaggtgaaaaaaaatccacatataagtggacctgtgcagttcaaatccatgttgttcaaaggtcagctgtattaacttgtatgcagagtcactgaaattatgcaattcgtcttttgtagctcatatttaccagaggatgagatagaataaaattatctcaactggtttcatctcactccttggtatgtgcacattctacccaggctgtctaccttttcttgccagtgaggaaggaaagactgaaaggagaaggaactatggggctctctttcttcccatgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgggtaagaaaggatgatggggctccttggtcattgtcttctttctgcgtttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcagtgtccccctgtcccttactcagttgttgacataacatgtttatc-atctgattgctttaagtctcaccgaactcctacacattatagattctgagctcatggaccaaagtaaatgtgagatgcaagtagggcagcaaggaacggtggacacagacattgcctgtgtctcctctgctcagatacaggctcctttgtcccatcagaccgtgcttactg
i nomLeu3.chr6              C 0 I 360
s rheMac3.chr7              112810028 968 - 170124641 tgggggtcg-gggtgctgaccgctgtgcagttggaaatccatgtatagctttcgacttgcccaaaactactaatagcctactgttgactggaagccttactgataacataaacagctaatacatattttgtatgttatatataatatatactgtgttcttacaataaagtaagctagagaaaagcaaatgttattggaatcataaggaagagaaaatatgttcactgctcattaagtggaagtggatcatcataagggtctc---cctcatcctcttcatgttgagtagcctgaagaggaaggagaaaggcaggggatgatctca-------ggggtggcagaggtgggaaaaaatccacatataagtggacctgtgcagttcaaatccatgttgttcaaaggtcagttgtattaacacgtatgcagagtcaccaaaattacacagttcatcttttgtagctgatatttaccagatgatgagatagaataaaactatctcaactggtttcatctcactccttgatatgggcacaatttacccaggctctctaccttttgttaccaatgaggaaggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgagtaagaaaggacggtggggctccttggtcattgtcttctttctgcatttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcactg-ccccccatcccttactcagttgttgtcataacatgtttatc-atctgatagttttgagtctcactgaactcctacacattatcgattctgagctcatggaccaaagtaaatgttagatgcaagtagggcagcaaggaatgctggacacagacattacctttctctcctctgctcagacataggctcctttgtcccataagaccttgcttacTg
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7              108905122 968 - 162156779 tgGGGGTTG-GGGTGCTGACCGCTGTGCAATTGGAAATCCATGTATAGCTTTCCACTCGCCCaaaactactaatagcctactgttgactggaagccttactgataacacaAACAgctaatacatattttgtatgttatatataatatatgctgtgttcttacaataaagtaagctagagaaaagcaaatgttattggaatcataaggaagagaaaatatgttcactgctcattaagtggaagtggatcatcataaggGTCTC---CCTCATCCTCTTCATGTTGAGTAGcctgaagaggaaggagaaaggcagGGGATgatctca-------ggggtggcagaggtgggaaaaaatccacatataagtggacctgtgcagttcaaatccatgttgttcaaaggtcagtTGTATTAACATGTATGCAGAGTCACCAAAATTACACAGTTCATCTTTTGTAGCTGATATTTACCAGATGATGAGATAGAATAAAACTACCTCAACTGGTTTCATCTCACTCCTTGATATGGGCACAATTTACCCAGGCTCTCTACCTTTTGTTACCAATGAGGAAGGAAAGACTGAAAGGAGAAGGAACTATGGGGTTCTCCTTCCTCCCATGTCTTCATTTTCTGCATAGCGATTGGCTAATACAGGGGTGTTAACATGAGTAAGAAAGGACGGTGGGGCTCCTTGGTCATTGTCTTCTTTCTGCATTTGAAGTAAGTCTGGTTCAAATGGAAAATGCAGCCTCTGGGCCTGTCACTG-CCCCCCATCCCTTACTCAGTTGTTGACATAACATGTTTATC-ATCTGATAGTTTTGAGTCTCACTGAACTCCTACACATTATAGATTCTGAGCTCATGGACCAAAGTAAATGTTAGATGCAAGTAGGGCAGCAAGGAATGCTGGACACAGACATTACCTTTGTCTCCTCTGCTCAGACATAGGCTCCTCTGTCCCATAAGACCTTGCTTactg
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C

a score=150078.000000
s hg38.chr15_KI270850v1_alt     19495 127 +    430880 gccaggcgcagtggctcacgcctgtaatcccagcactttgtgaggccgaggtgggtggatcacctgaggtcaggagttttagaccagcctggccaacatggtgaaaccccctctctactaaaaatat
s panTro4.chr15              79974827 127 +  99548318 gccaggcacagtggctcacgcctgtaatcccagcactttgtgaggccgaggtgggtggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79922113 127 +  99152023 gccaggcgaggtggctcacacctgtaatcccagcactttgtgaggccgaggtgggtggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatac
i ponAbe2.chr15             C 0 I 3396
s nomLeu3.chr6               22706905 127 - 121039945 gctggacacagtggctcatgcctatgatcccatttctttgggaggccgaggtgggtggatcacctgagatcaggagttcaagaccagcctggccaacatgatgaaaccccctctttactaaaaatac
i nomLeu3.chr6              I 360 C 0
s rheMac3.chr7              112810996 126 - 170124641 gccgggcgtggtggctcacgcctgtaatcccagcactgtgggagtcc-aggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccttctctactgaaaatac
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7              108906090 126 - 162156779 accgggcgtggtggctcacgcctgtaatcccagcactttgggagtcc-aggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccttctctactgaaaatac
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C

a score=546.000000
s hg38.chr15_KI270850v1_alt     19622 1 +    430880 a
s nomLeu3.chr6               22707032 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112811122 1 - 170124641 a
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7              108906216 1 - 162156779 a
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937 0 + 171882078 C
e ponAbe2.chr15              79922240 3396 +  99152023 I
e panTro4.chr15              79974954 0 +  99548318 C

a score=157493.000000
s hg38.chr15_KI270850v1_alt     19623 132 +    430880 aaaaattagctgggtgtggtggcggatgcctgtaatcccagctactcaggagcctgaggcaggagaattgcttgaacccgggaggtggaggctgcagtgagccaagattgagctgctgcactccagcctggg
s panTro4.chr15              79974954 132 +  99548318 aaaaattagctgggtgtggtagtggttgactgtaatcccagaaactcaggaggctgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagccgagattgcaccactgcactccagcctggg
i panTro4.chr15             C 0 I 4542
s ponAbe2.chr15              79925636 132 +  99152023 aaaaattagctgggcatggtggcggacgcctgtaatccaagctactcaggagcctgaggcaggagaattgcttgaacccgggaggtggaggctgcagtgagccaagatcgcaccacagcactccagcttggg
i ponAbe2.chr15             I 3396 C 0
s nomLeu3.chr6               22707033 132 - 121039945 aaaaattagctgggcatggtggcagacgcctgtaatcccagctattcaagagcctgaggcaggagaattgcttgaaccccggaggtggaggctgcagtgagccaagatcgtgccactgcactccagcctggg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112811123 132 - 170124641 aaaaattagctgggcatgggggcagatgcctgtaatcccatctgttcaggagcctgaggtaggagaattacttgaacccgggaggcggaggctgcggtgagccaagattgcaccactgcactccagcctgga
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7              108906217 132 - 162156779 aaaaattagctgggcatgggggcagatgcctgtaatcccagctgttcaggagcctgaggtaggagaattacttgaatccgggaggcggaggctgcagtgagccaagattgcaccactgcactccagcctggg
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C

a score=279192.000000
s hg38.chr15_KI270850v1_alt     19755 403 +    430880 caacaagagcaaaaaaa-ctctgtctcaaaaaaaaaaaaaaagaatagaagaTGGCAACAGCAGAGCATTGCATACCTGCCCCACTT---------------------------------------------------------CTCCCCACCCTCCATTGCTTTTTGCTaggcaaacaccttcaaacttaacacttt------------------------tagctctttcttgtgtttactttcctatttccgaaaagcactgctagactctcatttattgattttccagtttagatattatctagaaggttgggatttagcacccttgcatcacttcctatacgtacatttgtcccctcacctttcatcccaatttagtgttaacatacttggattaagtccatattctgcattttcattattatggctgtaaatcttgatggctgaactaagtgttgtaataagatggcatttcttttttt
s ponAbe2.chr15              79925768 402 +  99152023 caacaagagcaaaaaaa-ctgtgtctcaaaaaagaaaaaaa-gaatagaaGATGGCAACAGCAGAGCATTGTACACCTGCCCCACTT---------------------------------------------------------CTCCCCACCCTCCATTGCTTTTTTCTATGAaaccaccttcaaacttaacactgt------------------------tagctttttcttgtatttactttcctatttccaaaaagcgttgctagactctcatttattgattttccagtttagatattatctggaaggttgggatttagcacccttgcatcacttcctgtacatacatttgtcccctcacctttcatctcaatttagtggtaacatatttggattaagtccatattccgcattttcattattatggctgtaaatcttgatggctgaactaagtgttgtaataagacggcgtttcttttttt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22707165 402 - 121039945 caacaagagcaaaaaaagctccctctcaaaaaaaaaaaaaa--aatagaagatggcaacagcagagcattGTACACCTGccccactt---------------------------------------------------------ctccccaccctccattgcttttttctaggcaaccaccttcaaacttaacactgt------------------------tagctttttcttgtatttactttcctatttccaaaaagtattgctagactctcatttattgattttccagtttagatattatctggaaggttgggatttagcacccttgcatcacttcctgtacatacatctgtcccctcacctttcatcccaatttagtgttaacatatttggattaagtccatattcctcattttcattattatggctataaatcttgatggctgaactaagtgttatcataagatggcatttctttcttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              112811255 398 - 170124641 gaacaagagcgaaaaaa-ctctgcctccaaaaaaaaaaaaa-----aaaaaa--GCAAGA-------------------------TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNTATCtttttcttgtatttacttttctatttccaaaaagcattgctagactctcatttgttgattttccagtttagatattatctggaaggttgggatttagcacccttacatcacttcctgtacatacatttgtcccctcacctttcatcccaatttagtgttaacatatttggattaagtccatattccgcattttcattattacagctataaatcttgatggctgaactaagtgttgtaataagaCGGCAtttctttcttt
i rheMac3.chr7              C 0 I 3213
s papAnu2.chr7              108906349 398 - 162156779 gaacaagagcgaaaaaa-ctctgtctccaaaaaaaaaaaaa-----acaagattgcAACAGCAGAGCATCGTACACCTGCCCCACTT---------------------------------------------------------CTCCCCACCCTCCATTGCTTTTTTCTAGGCAACCACCTTGAAACTTAACACTTT------------------------TagctttttcttatatttacttttctatttccaAAAAGCATTGCTAGACTCTCATTTGTTGATTTTCCAGTTTAGATATTATCTGGAAGGTTGGGATTTAGCACCCTTGCATCACTTCCTGTACATACATTTGTCCCCTCACCTTTCATCCCAATTTAGTGTTAACATATTTGGATTAAGTCCATATTCCGCATTTTCATTATTACAGCTATAAATCTTGATGGCTGAACTAAGTGTTGTAATAAGacggcatttctttcttt
i papAnu2.chr7              C 0 I 6
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C
e panTro4.chr15              79975086 4542 +  99548318 I

a score=544646.000000
s hg38.chr15_KI270850v1_alt     20158 1152 +    430880 taattta--------ttttttattttgagagtgtctcattctgttgccctggctggagtacagtggtgcaatctcggctcatactgcagcctccacctcccaggttcaagctattctcatgcctcagcctcccaagtagctgggattacaggcacctgcca-ccacgcccagcatatgtttgtatttttagtagaggcgggatttctgtgttggccaggttggtctcaaactcctgacctcaagtgattcgccaccttagcctcccaaagtgctaggattacaggcgtgagccactgtgccccatctagacggcatttctttgtaagaacaag-cttttatttgcttggttttcattgcttctccaggccttccagatcctttaacagttttataagatgtctcttaatccagttttcccaaaggtaatctctaccagataatccagccgttcccttctttcctggaccctcctcccaacttccctctgtcctccagtttagactggatgctttctatgcctgccccaaaatattcatggaggg---tcctgtttctcggatcccatgctacttttttttatgggcaggtacc---ttttttttttttaatttgttttggtggagcacatcctcaagtagctttctgagaaagagcgcatggaggtaaatggtttgcctgtctcaaagtgtctttattcttccctcacatctgattgatattttgatttgatatcaacttctgggttggaagtgactcttcctcagaatgttgaaggcatttttctgttgtcttctagtttccaacattgctctgaagaggtcccataccatttggatttgaatgtgaccttttaaaaaatctggaagcttttaggactctttctctttctctctctctttttggtgattttaaatttta-aatatatgccttggtctattttaatttgagggagcactcattggactgttttaatctagaaacttgtgcccttcagtgattgaactgttggtgtattattgatttgataactttcttacattttctctttctggaacccttaatattcagctattctctcactttcttatttttaaacattttacacttcttcatctctttc-----tcttttcttttctatcctccctctctcccttctctctctttcactc
s ponAbe2.chr15              79926170 1156 +  99152023 t-ttttattttttatttttttattttgagagagtctcattctgttgccctggctggagtacagtggtgcaatctcagctc--actggagcttccgcctcccaggttcaagctattctcatgcctcagcctcccaagtagctgggattacaggcacctgccacccccgcccagctaatgtttgtatttttagtagagatggggtttccatgttggccaggctggtctcaaactcctgacctcaagtgattcgccaccttggcctcccaaagtgctgggattacaggtgagagccaccgcgccccatctagacggcatttctttgtaagaagaagttttttatttgcttggttttcattgcttcttcaggccttccagatcctttaacggttttataagatgtctcttaatccggttttcccaaaggtaatctctaccagataatccagcagttcccttctttcttggaccctcctcccaacttccctctgtcctccagtttagactggatgctttctacgcctgccccaaaatattcatggagggtcttcctgtttcttggatcccatgctacttttttttatggggaggtacc----tttttttttttaatttgttttggtggagcacatcctcaagtagctttctgagaaagagtgcatggaggtaaatggttttcctgtctcaaagtgtctttattcttccctcacatctgattgatattttgatttgatatcaacttctgggttggaagtgactcttcttcagaatgtcgaaggtatttttctgttgtcttctagtttccgacattgctctgaagaggtcccataccattctgatttgaatgtgaccttttaaaaaatctggaagcttttaggactctctctctt----tctctctttttggtgattttaaatttta-aatatatgccttggtctattttaatttgagggagcactcattggactgttttattctagaaacttgtgcccttcagtgattgaactgttgttgtattatttatttgataactttcttacattttctctttctggaacccttaatattcagctgttctctcactgtcttatttttaaacattttatactttttcatctctttctattttcttttcttttctATcctccctctctcccttctctttctt------
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22707567 1126 - 121039945 c-tttt---------tttttttttgagagggagtctcactatgttgccccagctggagtacagtggcgcaatctcggctc--actgcagcctctgcctcccaggttcaagtgattctcatgcctcagcctcccaagtagctggggttacaggcacctgccacccctgcccagctagtgtttgtatttttagtagagatggggtttgcatgttggccaggctggtctcgaactcatgacctcaagtgattcaccaccttggcctcccaaagtgctgggattacaggtgagagccaccgcaccccatctagatggcatttctttttaagaacaagttttttatttgcttggttttcattgcttctccaggccttccagatcctttaatagttttaaaagttgtctcttaatccagttttcccaaaggtaatccctaccagataatccagcagttcccttctttcttggaccctcctccaaacttccctctgtcctccagtttagactggatgctttctaggcctgccccaaagtattcatggagggtcttcctgtttcttggatcccatgctac-tttttttatggggaggtacctttttttttttttttaatttgttttggtggagcacatcctcaagcagctttctgagaaagagtgcatggaggtaaatggtttgcctgtctcaaagtgtctttattcttccctcacatctgattgatattttgatttgctatcaacttctgggttggaagtgactcttcttcagaatgttgaaggcatttttctgttgtcttctagtttccaacattgctctgaagaggtcccataccattgtgatttgaatgtgaccttttaaaaaatctggaagcttttaggactctctgtctt------tctctttttggtgattttaaattttacaatatatgccttggtctattttaatttgagggagcactcattggactgttttaatctagaaacttgtacccttcagttcttgaactgttgttgtattatttatttgataactttctcacattttctctttctggaacccttaatattcagctattctctcactttcttatttttaaacattttacactttttcatctctatt----ttcttttcttttctatcctccc-------------------------
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108906753 1154 - 162156779 ---ttctttctttcttttttttttgagagagagtctcactctgttgccctggctggagtacagtggtgcaatctcggttc--actgcagtctctgcctcccaggttcaagcaattctcatgcctcagcctcccgagtagctgggattacaggcacctgccacccccacccagctaatgtttgtatttttagtagagacggggtttccatgttggccaggttggtctcgaactcctgacctcaagtgattcgccaccttggattcccaaagtgctgggattacaggcatgagccaccgcgccccatcTAGATGGCATTTCTTTTTAAGAACAAGTTTTTTAATTGCTTGGTTTTCGTTGCTTTTCCAGGCCTTCCAGCTCCTTTAACAGTTTTGTAAGATGTCTCTtaatccagttttcccaaaggTAATCCCTACCAGATAATCCAgaagttcctttctttcttggaCCCTCCTCCCAACTTCCCTCTGTCCTCCAATTTAGACTGGATACTTTCTAGGCCTGCCCCAAAATATTAATGGAGGGTCATCATGTTTCTTAGATCCCATGCTAC-tttttttATGGGGAGGTACc------ttttttttagatttgttttggTGGAGCACATCCtcaagcagctttctgagaaagagtgCATGGAGGTAAACAGTTTGCCCGTCTCAAAGTGTCTTTATTCTTCCCTCACATCTGATTGATATTTTGATTTGATATCAACTTTTGGGTTGGAAGTGACTCTTCTTCAGAATGTTGGAGGCATTTTTCTGTTGTCTTCTAGTTTCCAACATTGCTCTGAAGAGGTCCCATCCCATTCTGATTTGAatgtgaccttttaaaaaatctggaagCTTTTAggactctctctctttctctttctctttttggtgatttaaaattttacaatatatGCCTTTGTCTATTTTAATTTGAGGGAGCACTCATTGGAGTGTTTTAATCTAGAAACTTGTGACCTTCAGTTCTTGAACTGTTGTTGTATTATTCATTTGATAACtttcttacattttctctttctggaaccC------TGCAGCTATtctcttgctttcctatttttaaacattttatactttgtcgtctctttctattttcttttcctttctatcatccctcctctttctctctctctctctc--
i papAnu2.chr7              I 6 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223  886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019   12 +  24206276 I
e macFas5.chr7               61589937    0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=12724.000000
s hg38.chr15_KI270850v1_alt     21310 118 +    430880 ccttcctctctccctccctccctccctccttccc-tcctccctccctccctccctccctcccttccttccttccttccgtccttccttccctccttccttccttccttccttccttttg
s ponAbe2.chr15              79927326  89 +  99152023 ----------tccctccctccctcccttcttcccttcctcccttcctccctccctccctcccttcctccct--------------------tccttccttccttccttccttcctttcg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22708693  78 - 121039945 ----------ttcctccctacctcccctctctct-ccctccctccctccctttctctctctctctctctca--------------------tctttctttctttc----------tttg
i nomLeu3.chr6              C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e papAnu2.chr7              108907907   0 - 162156779 C
e macFas5.chr7               61589937   0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=169574.000000
s hg38.chr15_KI270850v1_alt     21428 381 +    430880 agtctcgctttgttgcccaggctggagtgcagtgccacaatcatggctcactgcagcctcgagctcccaggcacaaatgatcctcctgcctcagcatcccaagtagctgggactacaggtgtatgccaccacactcagctaattttttaat------ttttctgtagagatggggttttgccatgctgcttaggctggacttgaactcctggaatcctctctcagtctcccatagttctgggattacaagcgttagccaccgtgcctagccatc----tctattttctaggaggtatctga-----ctctactttacaatccctctattaaatttttgatttttttcattgtacttttaatttcttgaactttctcactcactaaatacacattgc
s ponAbe2.chr15              79927415 384 +  99152023 agtctcgctttgttgcccaggctggagtgcagtgccacagtcatggctcactgcagcctggagctcccacgtacaaatgatcctcctgcctcagcatcccaagtagctgggactacaggtgtgtgccaccacactcagctaattttttaat------ttttctgtagaggtggggttttgccatgttgctcaggctgggcttgaactcctggactcctcccttagcgtcccatagttctgggattacaagcgtgaaccaccatgtccagccatctctttctattttctagga-gtatctgattcatctttactttacaatccttctatt-aatttttga-ttttttca-tgtacttttaatttcTTG-ACTTTCTCATTCACT-AATACACATTGC
i ponAbe2.chr15             C 0 M 458
s nomLeu3.chr6               22708771 395 - 121039945 agtctcgctttgttgcccaggctggagtgcagtgccacaatcatgactcactgcagcctcgagctcccaggcgcaaatgatcctcttgcctcagcatcccgagtagctgggacaacaggtgtgtgccaccacacccagctaattttttaatttttaattttttctagagatggggttttgccatgttgctcaggctgggcttgaacttctggactcctccctcagcctcccaaagttctgggattaccgtcgtgagccagcatgcccagccacctctttttattttctaggaggcatctgatttatctttactttataatctttctattaacattttca-tttttttattgtacttttaatttcttaaactttctcattcactaaatacacattgc
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108907907 382 - 162156779 ggtcttgctttgttgcccaggctgcagtgcagtgccacaatcatggctcactgcagcctcgagctcccaggcacaaatgatcctcctgcctcagcattccgagtagctg--------------tgccaccacacccagctaattttttaatttttacttttttctagagatggggttttgccatgttgctcaggctgggcttgaactcctggactcctccctcagcctcctaaagttctgggattacaggcgttagccagcgtgcctggccgtctctttctgttttctaggAGGCATCTGatttatctttactttataatcttactattaaatttttcatatttttcattgtacttttaatttcttaaacTTTCTCATTCACTAAATACACATTGT
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=15454.000000
s hg38.chr15_KI270850v1_alt     21809 62 +    430880 gtgtctcatatctgaaatacttgggaccagaagtgttttagattttggatttttttttttta
s nomLeu3.chr6               22709166 61 - 121039945 gtgtctcatatctgaaatacttagggccagaagtgttttagattttggattttttttgttt-
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108908289 62 - 162156779 GTGTCTCATATCTGAaatacttgggaccagaagtgttttagattttggatttttttttttta
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e ponAbe2.chr15              79927799 458 +  99152023 M
e panTro4.chr15              79975086 4542 +  99548318 I

a score=320107.000000
s hg38.chr15_KI270850v1_alt     21871 647 +    430880 ttattttggagtatttccattatacttaccagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagaatttcctctgagcatcatgttagtgcccaaaagttttggattttggagcatttggattttgggattggagatactcaacctgtgcaccttttgatcctattcctgttttgtgggtacagtgtgttctcttatctctgtgaggttattacttacacggatttgacttttttcttctgttccctgaaatgtttttatttcctttgggtta-tttaaaaaaatatatttgtttcatgttaacagttttcttggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatctcttgaggtcaggagttcgagaccagcctgaccaacatggtgaaatcctgtctctactaaaaaaa--atacaaaaaattagctgggcatggtggctcatgcctgtaattgcagctactcaggaggctgaggcaggagaatcgcttgaacccgggagggaaaggctgcagtgaaccaagattctgccactgtactccagcctgggcaaaagagagagactctgtctcaaagaaaagttttcttaaaatgcattggctgta
s ponAbe2.chr15              79928257 643 +  99152023 TTattttggagtatttccattatacttaccagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagcatttcctctgagcatcatgttagtgctcaaaagttttggattttggagcacttggattttgagattggagatgctcaacctgTGCACCTTTTGatcctattcctgtttcatgggtacagtacgttct-ttatctctgtgaagttattacttacatggatttgacttttttcttctgttccctgaaatgtttttctttcctttgggcta-tttaaaaaaa---atttgtttcatgttaacagttttcttggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatctcttgaggtcaggagttcgataccagcctggccaacatggtgaaatcctgtctctactaaaaaaa--atacaaaaaattagctgggcatggtggctcgtgcctgtaattgcagctactcaggaggctgaggcaggagaatcgcttgaacccaggagggagaggctgtagtgaaccaagattccgccactgtactccagcctgggcaaaagagagagactctgtctcaaagaaaagttttcttaaaatgcgttggctgta
i ponAbe2.chr15             M 458 C 0
s nomLeu3.chr6               22709227 642 - 121039945 --------gagtatttgcattatacttagcagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagatcatttcctctgagcgtcacgttagtgctcaaaagttttggattttggagcatttggattttgggattggagatgctcaacctgtgcaccttttgatcctattcttgtttcatgggtacagtatgttctcttatctctgtgaggttattacttacatagatttgacttttttcttctgttccctgaaatgtttttctttcctttgggttatttttaaaaaatatatttgtttcatgttaacagtttccttggccaggcacagtggctcacacctgtaatccccgcactttgggaggccgaggcaggcagatatcttgaggtcagtagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaaaaagatacaaaaagttagccaggcatggtggctggtgcctgtaatcgcagttactcaggaggctgaggcaggagaatcgcttgaacccgggaggccgaggctgcagtgaaccgagattgtgacactgtactccagcctgggcaacagagagagactctgtctcaaaaaaaagttttcttaaaatgcattggctgta
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108908351 642 - 162156779 --attttggagtaTTTGCCTTATATTTAGCAGTTCAGAATCCCCAGACTGAAAGTCCAAAATCTGAAGTGCTCCAAAGAGCATTTCCTCTGAGCATCATGTTAGTGctcaaaagttttggattttggagcatttggaTTTTGGGATTAGACGTGCTCAACCTGTGCACCTTTTGATCCTATTCTTGTTTCATGGGTACAGTAGGTTCTCTTATCTCTGTGAGGTTATTACTTACATggatttgacttttttcttctgttccctgaaatgtttttctttcctttgggtta-tttttaaaaaaatatttgtttcatgttaacagttttcttggccaggcacagtggctcacgcctgtaattccagcactttgggaggccgaggcaggcagatctcttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaaaa--atataaaaaattagccgggcacagtggctggtgcctgtaatcgcagctactcaggaggctgaggcaggagaatcgcttgaacccgggagacggaggctgcagtgaactgagattgcaccactgtactccagccttggcaacagagagagactctctc---aaaaaaagttttcttaaaatgcaTTGTCTGTA
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  90180779 1226 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=18024.000000
s hg38.chr15_KI270850v1_alt     22518 32 +    430880 tttcatatatagca-----aggagatgcagagacact
s ponAbe2.chr15              79928900 32 +  99152023 tttcatatacagca-----aggagatgcagagacact
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22709869 32 - 121039945 tttcatgtatagca-----aggagatgcagagatact
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108908993 32 - 162156779 TTTAATATATAGCA-----AGGAGATGCAGAGATACT
i papAnu2.chr7              C 0 C 0
s mm10.chr9                  90182005 37 + 124595110 TTTCACATACAGAATGTAGAGGGGAGAAACAGCTTCC
i mm10.chr9                 I 1226 C 0
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=561049.000000
s hg38.chr15_KI270850v1_alt     22550 882 +    430880 aattgggcagtttgtggacttgggcaggacttttccaagtcactgctgaaggactggttcagatggggctattttggggag----------------------atcctctaatgtcactatctgaggtcatttttctgagtgattcag--tttcctgagaggaatcctctcgacttttcctgggagagtgt-atgtctg-----gctgcagcattccagcatccaagtgggaaaggggcttggcgtgtttcttacccttcaatgtgtagacttttgctt-gtccccttttctctgtaggtccttctgccttgggccttcatgtgtgtccaccgttcctgggccagagcctcctggttcaccctctccaggaagtgatccctggccctctgctgggtggcaggtggccgtcacttggctactcagggttggggaggggctctagggtctgatcggttcttacagactttcagccctactgtcttcagccctcctggccg--------taaggccctgaggagtccctgcaaactcagttcctgagccttttcgggcttctgcttctgggtggttcccccctgcaggaatctgactctcagctttcatcactct-agcaagtcagctactgcctggccatctgcttcccagcttccagaatcttgttgacatccttcattactcatcatcacccctt------------------atggatttatgccttgtttatttcctctactgtcattatagtggagtcttggaaggaagcagcgataaatctgtctgctcaatgtgccat-gtttttctagaagtcCACT---CACTGTGGGGCTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTAAGAGCAAGGATACTGGCCTCCAGTGGAAGAGGGATTACTGGGGTGGGGGGTGG-GATTGGAAGCAGA----GAAGA
s ponAbe2.chr15              79928932 882 +  99152023 aactgggcagtttgtggacttgggcaggacttttccaagtcactgctgaaggactggttcggatggggctgttttggggag----------------------atcctctaatgtcagtatctgaggtcatttttctgagtgattcag--tttcccgagaggaatcctctcaacttttcctgggagagtgt-atgtctg-----gctgcagcattccagcatccaagtggggaaggggcttgtcatgtttcttacccttcaatgtgtggacttttgctt-gtccccttttctctgtaggtccttctgccttgggccttcatgtatgtccagcattcctgggccagagcctcctggttcaccctctccagggagtgatccccggccttctgctgggtggcaggtggccgtcacttggctacttagggttggggaggggatctagggtctgatcagttcttacagactttcagccctactgtcttcagccctcctggccc--------taaggccctgaggggtccctggaaactcaattcctgaacctttccgggcttctgcttctgggtggttccccactgcaggaatctgactctcagctttcatcactct-accaagtcagctactgcctggccatctgcttcccagcttccagaatcttgttgacatccttcattacccatcatcacccctt------------------acggatttatgccttgtttatttcctctactgtcatcatagaggagttttggaagggagcagagataaatctgtctgctcaatgtgccat-gtttttctagaagtcCACT---CACCGTGGGGTTTAAGCAGGGATGTGACCACGTCCATTAGGAATGTAAGAGCAAGGATGCTGGCCTCCAGTGGAAGAGGGATTACTGGGGTAGGGGGTGG-GATTGGAAGCAGA----GAAGA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22709901 880 - 121039945 cattgtgcagtttgtggacttgggcaggacttttccaggtcactgctgaaggactggtttggacggggctatttcgggaag----------------------atcctctaatgtcagtatctgaggtcatttttctgagtgattcag--tttcccgaaagggatcttcttgacttttcctgggaga--gt-atgtctg-----gctgcagcattccagcatccaagtggggaaggggcgtggcatgtttcttacccttcaatgtgtagacttttgctt-gtcccctttcctctgtaggtccttctgccttgggccttcatgtatgtccagcattcctgggccagagcctcctggttcaccctctccagggaatgatccccagccctctgctgggtggcaggtggccgtcacttggctactcagggttggggagggaatctagggtctgatcagttcttacagactttcagccccactgtcttcagccctcctggccc--------taaggccctgaggggtccctggaaactccattcctgagcctttccgggcttctccttctgggtggttcctccctgcaggcatctgactctcagctttcatcactct-accaagtcagctactgcctggccatctgcttcccagcttccagaatcttgttgacatccttcattacccatcatcagccgtt------------------atggatttatgccttgtttatttcctctactgtcatcatagtggagtcttggaagggagcatcgataaatctgtctgctcaatgtgccat-gtttttctagaagtcCACT---CACTGTGGGGTTTAATCAGGGATGTGACCAGGTCCATTAGGGATGTAAGAGCAAGAATGCTGGCCTCCAGTGGAAGAGGGATTACTGGGGTGGGGagtgg-gattgaaagcaga----gaaga
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108909025 873 - 162156779 AATTGTTCAGTTTGTGGACTTGGGCAGGACTTTTCCAAGTCACTGCTGAAGGACTGGTTCAGATAGGGCTGTTTTGGGGAG----------------------ATCCTCTAATGTCAATATCTGAGGTCATTTTTCTGAGTGATTCAG--TTGCCCAAGTGGAATCCTCTAGACTTTTCCTGGGAGACTGT-ATGTCTG-----GCTGCAGCATTCCGGCATCCAAGTGAGGAAGGGGCTTGGCGTGTTTCTTACCCTTCGACGTGTAGACTTTTgctt-gttctcttttctctgtaggTCCTTCTGCCTTGGGCCTTCATCTATGCCCAGTGTTGCTGGGCCAGAGCCTCTTGGTTCACCCTTGCCAGGGAGTGATCCCCGGCCCTGTGCTGGGTGGCAGGTGACAGTCACTTGGCTACtcagggttggggaggggatCTAGGGTCTGATCAGTTCTTACAGACTTTCAGCCCTACTGTCCTCAGCCCTCCTGGCCC--------TAAGGCCCTGAGGGGTCCCTGGAAAC---------AGGCTTTTCTGGGCTTCTCCTTCTGGATGGTTCCTCCCTGCAGGCATTTGGCTCTCAGTTTTCATCACTCT-ACCAAGTCAGCTACTGCCCGGCCATctgcttcccagcttccagaatctTGTTAACATCCCTCATTACCCATCAGCACCTCTT------------------ATGGATTTATGCTGTGGTCATTTCCTCTACTGTCATCAGAGTGGAGTTTTGGAAGGGAGCATCGATAAATCTGTCTGCTCAATGTGCCAT-GTTTTTCTAGAAGTCCACT---CACTGTGGGGTTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTAAGAGCAAGAATGCTGGCCTCCAGTGGTAGAGGGATtactggggtggggagtgg-gattGGAAGCAGA----GAAGA
i papAnu2.chr7              C 0 C 0
s mm10.chr9                  90182042 798 + 124595110 TATTGGGAGATCTATAG-CTTTGGCTATGCCTTTCCGAGTCACCGATGAAGAGCTCACTGGGGTGCGTCTGTTCTGTGGGGGGAGGGGGGGGGAAGTGAGAGCATCCTTAAATGCTAGAAACTGACTTCATGTTTCTGAGTGACTCAGGATACCCAGAGAAGACGCTACTC------TCCTGGGAGAGTGTCACATCTGTCACATCTGCTGTTGTCTGTCATATCTGATAGGGCAGGGCTTGCTG-GTGACCCAGTCTTCACTGTGCAAAGGGACACTTAGTGTCCCTTTCTCTGTAGGATCCTCCACTATGGGCCCT-GCCTGTGACTGGGCTTCCTAGGCTAGATCTACCTGGGTC-------------------------------------------------------------------TTTGGAG--------------------------TAGAAACCTTCAGA----------TTAGCTCTGCTGGCCCCAGATAGATAAGGTGCTCTGAGATCCCGGG-----------------TCTTCCAGTCCTCtgcttctccatcatttctcctcacaggc-tttagctctcagcttctgtcacttt-cccaagtcagctaccgattggccatctgctttccagcttctagaattccgtcgacatctctcatctgctgtcatcgcttccctcttctcctcttctccgggtggagttatgttttgttta-ttcctcaaatgtcagggtagaaaagcttt-------agcagagaCAG----GCCTGCTCAGTGTGCTGT-GGTTCTCTGCAAGCCCACTCCGCACGGTGG----TAGCCTGATGCGTGCCTAGGGCCTCCGGGCTAGTGAGAGCATGGGCACCGGTCTCCCCTGGAAGAGTGGT---TTGTGTGAGGGGTGACAACTGGAGACTGAGTTTGGAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58204609 780 +  91889043 AGTTGGGAGGCTTGTGAA-----GCAGG-------CAGGCTTTTGGGGAGGGGCTG-------------TATCTCTGGGAG----------------------GTGTTCAGATATCTGCA--CGAGGCTCATTTCTGGTGTGGTTCCA--TTTCCCCAGAGAGGAACTCTCCTGTTGTCCTGGGAG------GTGTTAG-----------GCATTATGGCACCTGCGTGTGGAAGCGGCTTGGC--GATCTCCACCCTTCCTTGTGGAGACTTACATTT-TTCCC---TTCTCTATAGATCCTTCCG---TAGGTCTTCG-----------------GGGGCCAGATCCTTTT-GTTCACCCTCTTCAGG-AGTGACCCTTGGCTCTCTGCAGGCAGGGAGGTGGTCATCACCTGGCCACACAGAA-CGGGGAGCGAATGTGGGAGCTGAT--------------------GCCTCTGGTCCTCCATCCCACTGGAGC--------CCTGGCCTCCATGGCTCCCTGGGACT--GGAGCCTGAGCCTTTCTCAGGCTCTGCTTCTGGGTGGTTCTTCCATGTAGGA-CATGGCTttcagctctcgctgctctgaccaggtttgccactggttgaccatctgcttcccagctcctggggttttgctgactt--tttgtctgccatcacctccccctggttccttatccct----gaggacttatgccctgttcttttcc-----tgtcatcctagggggattctgagcaggTGGGGAG--------------TTCATCTGCCATGGGTCTTCTAGAAGTCC-CT---TACTGCGGGGTATAAGTGGGGACACGGGTGCGT-CACTGTGGGTGT--GAGCAGCAGCTCTGGCCTCTGACAGTGGAGGGATGGCAGGGGGCAGGGGGGC-----AGGGGAAGA----GATGA
i canFam3.chr3              I 5254 C 0
e calJac3.chr10             113734223 886 - 132174527 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=15575.000000
s hg38.chr15_KI270850v1_alt     23432 30 +    430880 GTTTTGTTTGGTGGTTAAGAACCTAG--ACTG--------------------------
s ponAbe2.chr15              79929814 30 +  99152023 ATTTTGTTTGGTGGTTAAGGACCTAG--ACTG--------------------------
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22710781 22 - 121039945 gttttctttggtggt--------tag--actg--------------------------
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108909898 30 - 162156779 GTTTTGTTTGGTGGTTAAGGACCTag--actg--------------------------
i papAnu2.chr7              C 0 I 1670
s calJac3.chr10             113735109 30 - 132174527 GCTATGTTAGGTGGTTAAGAACCTAG--GTTG--------------------------
i calJac3.chr10             I 886 I 1334
s mm10.chr9                  90182840 31 + 124595110 GTTGAGTTTGGTGACTAA-AACTTGGACACTG--------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58205389 55 +  91889043 GTTGCGGGTGATAGTTAA-GGCCTGG--ACTCTGCTTGGCTTTTGCCTGTGTTGGCAG
i canFam3.chr3              C 0 C 0
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=3566.000000
s hg38.chr15_KI270850v1_alt     23462 3 +    430880 GCC
s ponAbe2.chr15              79929844 3 +  99152023 GCC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22710803 3 - 121039945 gcc
i nomLeu3.chr6              C 0 I 1673
s papAnu2.chr7              108911598 3 - 162156779 GCT
i papAnu2.chr7              I 1670 C 0
s calJac3.chr10             113736473 3 - 132174527 GCC
i calJac3.chr10             I 1334 C 0
s mm10.chr9                  90182871 3 + 124595110 GCC
i mm10.chr9                 C 0 I 1297
s canFam3.chr3               58205444 3 +  91889043 ACA
i canFam3.chr3              C 0 C 0
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937 0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=27567.000000
s hg38.chr15_KI270850v1_alt     23465 28 +    430880 TGTCCAAGAGGGTTGACCTGAAGAACTC
s ponAbe2.chr15              79929847 28 +  99152023 TGTCCAAGAGGGTTGACCTGAAGAACTC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22712479 28 - 121039945 TGTCCAAGAGGGTTGACCTGAAGAACTC
i nomLeu3.chr6              I 1673 C 0
s papAnu2.chr7              108911601 28 - 162156779 TGTTCAAGAGGGTTGACCTGAAGAACTC
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113736476 28 - 132174527 TGTCCAAGAGGGTTGGCCTGAAAAACTC
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58205447 26 +  91889043 CGTCCCACGGGGCT--CCTGACGGGCCT
i canFam3.chr3              C 0 I 175
e mm10.chr9                  90182874 1297 + 124595110 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=93777.000000
s hg38.chr15_KI270850v1_alt     23493 134 +    430880 TAAGAACCTTTCTGGGCTGACAGGTGCTTTATGGGACCTTGGGGAGAGGTCACAGCATTTCGCCAGTGTCAACTTGGACCTGGGTGGGGAGGAGGGGAGGCCCTGGTCCCTGGTTTCCTCAAAGCCAGCATTTC
s ponAbe2.chr15              79929875 134 +  99152023 TAAGAACCTTTCCGGGCTGACAGGTGCTTTAAGGGATCTTGGGGAGAGGTCACAGCATTTCACCAGTGTCAACTTGGACCTGGGTGGGGAGGAGGGGAGGCCCTGGTCCCTGCTTTCCTCAAAGCCAGCATTTC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22712507 134 - 121039945 TAAGAACCTTTCCGGGCTGACAGGTGCTTTAAGGGACTCTGGGGAGAGGTCACAGCATTTCACCAGTGTCAACTTGAACCCGGGTGGGGAGGAGGGGAGGCCCTGGTCCCTGCTTTCCTCAAAGCCAGCATTTC
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108911629 133 - 162156779 TAAAATCCTTTCCAGGCTGACAGGTGCTTTAAGGGACCCTGGGGAGAGGTCACAGCATTTCATTGGTGTCAACTTGGACTTGGGT-GGGAGAAGGGGAGGCCCTGGTCCCTGCTTTCCTCGAAGCCAGCATTTc
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113736504 128 - 132174527 T-AGAGACTTTCTGGGCTGACAGATACTCTA--GAGCTCCACGGAGCTGTCACAGCATTTCACCAGTGTCAACTTGGACCAGG---TGGGAGAAGGGAGTTCCTGCTCCCCGATTCCCTTAAAGCCAGCATTTC
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e canFam3.chr3               58205473 175 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=68455.000000
s hg38.chr15_KI270850v1_alt     23627 112 +    430880 TACAGGGAGAGAGGCAGG--CTAGGTAACATGTGGGGTCCTTCACTTCACCCCATGGACA-------------CCC----CATGCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCCA-GGG-------------------------------------GTGGCCAGGGGAGC--GGGCCC
s ponAbe2.chr15              79930009 116 +  99152023 TACAGGGAGAGAGGCAGG--CTGGGTGACATGTGGGGTCCTTCACTTCACCACATGGACA-------------CCCCATTCATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCCA-GGG-------------------------------------GTGGCCAGGGGAGC--GGGCCC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22712641 106 - 121039945 TACAGGGAGAGAGGCAGG--CTGGGTCACATGTGGGGTC-----CTTCACCCCATGGACC-------------CCC----CATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC--GGG-------------------------------------GTGGCCAGGGGAGC--GGGCCC
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108911762 113 - 162156779 tacagggagagagacagg--ctcGGTCACATGTGGGATCTTTCACTTCACCCCATGGACA-------------CCCC---CATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCCA-GGA-------------------------------------GTGGCCAGGGGAGC--GGGCCC
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113736632 113 - 132174527 TACTGGGAGAGAGGCAGG--CTGGGTCACACGTGGGGTCCTCTACTAAATCCCATGGATC-------------CCC----CATCCAGCGA--------------------CTCCATGAC------------------------------------------------------------CAGATCTCAGGGA-------------------------------------GGGGGTAGGGGATC--GGGCCC
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58205648 245 +  91889043 TGGGGGCAGAGAGGAAGGGACTGGGTTGGAAG-ATGATCTGCCCCAACACCCCCGGGACCTGTTCCCAGCTGTCCC----CACCCAGGGAGCTGCCCCGCACCCTGCTGCCTCCGTGACAGACACACACACAGGGTCTCTGTGCTGTTTCAGTGGCTGGAATGCACGAGGGACTTGGCTCGGGGCCTA-GGGCGAGGGTGGGAAGAGCAGGCTGGAGCCTGAGCCAGCCGGGGCCTTGGGAGCCTGGGCCC
i canFam3.chr3              I 175 I 26
e mm10.chr9                  90182874 1297 + 124595110 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=11784.000000
s hg38.chr15_KI270850v1_alt     23739 14 +    430880 ACATGTCTCTCCTG
s ponAbe2.chr15              79930125 14 +  99152023 ACAGGTCTCTCCTG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22712747 14 - 121039945 ACAGGTCTCTCCTG
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108911875 14 - 162156779 ACAGGTCTCTCCTG
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113736745 14 - 132174527 CCAGGTCTCTCCTG
i calJac3.chr10             C 0 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e canFam3.chr3               58205893 26 +  91889043 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=1365.000000
s hg38.chr15_KI270850v1_alt     23753 1 +    430880 T
s ponAbe2.chr15              79930139 1 +  99152023 T
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22712761 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108911889 1 - 162156779 T
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113736759 1 - 132174527 T
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58205919 1 +  91889043 T
i canFam3.chr3              I 26 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937 0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=43489.000000
s hg38.chr15_KI270850v1_alt     23754 46 +    430880 CAGTGGTGGGCAGCTCTTTGCAG-----TCTTGAGGTGAGAGTGAAGCTTC
s ponAbe2.chr15              79930140 46 +  99152023 CAGTGGTGGGCAGCTCTTTGCAG-----TCTGGAGGTGAGAGTGAAGCTTC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22712762 46 - 121039945 CAGTGGTGGGCAGTTATTTGCAG-----TCTCAAGGTGAGAGTGAGGCTTC
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108911890 44 - 162156779 CAGTGGTGGGCAGCTCTTTGCAG-----TCTCGAGGTGAGAGTG--GTTTC
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113736760 46 - 132174527 TGGTGGTGGGCAGTGCTTTGCTG-----TCTCCAGGTTACAATGAGGCTTC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90184171 46 + 124595110 CAGGCATAGACAGCTCTTTGCTA-----TATCCAGGTGACAGTAAGGCTTC
i mm10.chr9                 I 1297 C 0
s canFam3.chr3               58205920 51 +  91889043 CAGAGAGAGCCAGCCTGCAGCGGAGGGTTCTGGGGGTCACACTCAGGCTGC
i canFam3.chr3              C 0 C 0
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79975086 4542 +  99548318 I

a score=23541.000000
s hg38.chr15_KI270850v1_alt     23800 22 +    430880 ----TGA-----------------CTGGAG--TCACCTACTGTCT
s panTro4.chr15              79979628 22 +  99548318 ----TGA-----------------CCGGAG--TCACCTACTGTCT
i panTro4.chr15             I 4542 C 0
s ponAbe2.chr15              79930186 22 +  99152023 ----TGA-----------------CCGGAG--TCACCTACTGTCT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22712808 22 - 121039945 ----TGA-----------------CCGGAG--TCACCCACTGTCT
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108911934 22 - 162156779 ----TGA-----------------CCAGAG--TCACCTACTGTCT
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113736806 22 - 132174527 ----TGA-----------------CCCAAG--TCACATACTGTCT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90184217 18 + 124595110 -------------------------TCGAG--TCACCACTCGTCT
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58205971 45 +  91889043 AGGGTGGGGGTGCCAGCCTGTCCTCCGGCGCCTCACCCTCCGTCT
i canFam3.chr3              C 0 I 132
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I

a score=135305.000000
s hg38.chr15_KI270850v1_alt     23822 90 +    430880 GCTTTGACCTCTTGTGGGACTGCCCAGCCCTGCTATAGTTAGCTTCAGGAGGGGCGTGGAGGGGAAGGGCTGATGGTTTGGGGGATCCGG
s panTro4.chr15              79979650 90 +  99548318 GCTTTGACCTCTTGTGGGACTGCCCAGCCCTGCTATAGTTAGCTTAAGGAGGGGCATGGAGGGGAAGGGCTGATGGTTTTGGGGATCCGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79930208 90 +  99152023 GCTCTGACCTCTTGTGGGACTGCCCAGCCCCGCTATAGTTAGCTTAAGGAGGGGTGTGGAGGGGAAGGGCTGACGGGTTTGGGGATCCGA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22712830 90 - 121039945 GCTTTGACCTCTTGTGGGACTGCCCAGCCCCGCTATAATTAGCTTAAGGAGGGGCGTGGAGGGGAAGGGCTGGCGGCTTTGGGGATCCGG
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108911956 90 - 162156779 GCTCTGACCTCTTGTGGGACTGCCCAGCCCCGCTATAATTAGCCTAAGGAGGGGCGTGGAGGGGAAGGGCTGACGGGTTTGGGGATCCGG
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113736828 90 - 132174527 GCTCTGACCTCCTGTGGAGCTGCCCAGCCCCACTATAATTAGCTCGAGGAGGGGCGTGGAGGGGAAGGGCTGACAGGCTTGGGGATCCGG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90184235 89 + 124595110 ATTCCGACCCTATGTGGGGTGGCTCAGCCCTGCCATAATTAGCACAAGGAAGAGTCCTGAAGGGAC-AGCTGATGGGTGTGGGGACCTTG
i mm10.chr9                 C 0 C 0
e canFam3.chr3               58206016 132 +  91889043 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I

a score=104407.000000
s hg38.chr15_KI270850v1_alt     23912  68 +    430880 GTGTGT---CGGCAGTGCAGAGAACCTGGCAGTCAGCCTGCCAGAGGAAGGAAGGGC----------------------------------------------------------------------------------------------TGGCTGACGGCCAC
s panTro4.chr15              79979740  68 +  99548318 GTGTGT---CGGCAGTGCAGAGAACCTGGCAGTCAGCCTGCCAGAGGAAGGAAGGGC----------------------------------------------------------------------------------------------TGGCTGACGGCCAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79930298  68 +  99152023 GTGTGT---TGGCAGCGCAGAGGACCTGGCAGTGAGCTTGCCAGAGGAAGGAAGGGC----------------------------------------------------------------------------------------------TGGCTGCCGGCCGC
i ponAbe2.chr15             C 0 I 121
s nomLeu3.chr6               22712920  68 - 121039945 GTGTGT---CAGCAGCGCAGAGGACCTGGCAGTGAGCCTGCCAAAGGAAGGAAGGGC----------------------------------------------------------------------------------------------TGGCTGCCGGCCGC
i nomLeu3.chr6              C 0 I 123
s papAnu2.chr7              108912046  68 - 162156779 GTGTGT---CGGCAGTGCAgaggagctggcagtgagcctgCCAGAGGAAGGAAGGGC----------------------------------------------------------------------------------------------TGGCTGCCGGCCGC
i papAnu2.chr7              C 0 I 123
s calJac3.chr10             113736918  68 - 132174527 GTGTGT---CGGCAGCGCAGAGAACCTGGCAGTGAGCCTGTCAGAGGAAGGAAGGGC----------------------------------------------------------------------------------------------TGGCTGCCGGTCGC
i calJac3.chr10             C 0 I 123
s mm10.chr9                  90184324  64 + 124595110 GCGTGTGTCCGGCTGTGGGAGGAGCCTGGCAGTGAGCCAGCCAGAGGAAGGAACGGC----------------------------------------------------------------------------------------------CGCCCCC-------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58206148 162 +  91889043 GTGTGT---CAGCGGGGTGAGGAGCCCGGCAGTGAGCCAGCCACAGGAAGGAAGGGCCTTTCCCAAGTACGTGCTGCTATTTATACCTCCAAGCTTGGGTTCCCTCAGGCTCCTCAGCCTCTGGTAGTTAAGTCCTCAGAAGCAGGAGGGATGGCCCAGGGCCGC
i canFam3.chr3              I 132 C 0
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I

a score=22742.000000
s hg38.chr15_KI270850v1_alt     23980 21 +    430880 -------------------CTTGAGTTTCTGAC---TCCCAAG
s panTro4.chr15              79979808 21 +  99548318 -------------------CTTGAATTTCTGAC---TCCCAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79930487 21 +  99152023 -------------------cttgggtttctgac---tcccaag
i ponAbe2.chr15             I 121 C 0
s nomLeu3.chr6               22713111 21 - 121039945 -------------------cttgggtttctgac---tcccaAG
i nomLeu3.chr6              I 123 C 0
s papAnu2.chr7              108912237 21 - 162156779 -------------------CTTGGGTTTCTGAC---TCCCAAG
i papAnu2.chr7              I 123 C 0
s calJac3.chr10             113737109 21 - 132174527 -------------------CTTGGGTTTCTGAC---TCCCAAG
i calJac3.chr10             I 123 C 0
s mm10.chr9                  90184388 16 + 124595110 ---------------------------TCTGACTTTTCCCAAG
i mm10.chr9                 C 0 I 424
s canFam3.chr3               58206310 39 +  91889043 ACGGAGGCAGAGACTAGAACTCGGAT-GCTGAC--GTTCCAT-
i canFam3.chr3              C 0 C 0
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I

a score=1624861.000000
s hg38.chr15_KI270850v1_alt     24001 1267 +    430880 ACAGCACCTGGGCCTGATTCTGGCAGTGGATTCTGTGAGGG--------------TCACCTTATGCTCCCAACTTCTCCCA-ACATCCAGGGTGGGCT-GAGAGGTTGTTGCGGCTTCAGCTGCCCAGCAGCAGGCCTGCAGGA---GCCACATGTGCAGCGAGTCAGCACTGGGG--CAGCCAGGAAACAAAAGGGCTCGGCTGCAGCCCAGGGACTGTTGGTGCCGGGATGAGGCGCATTGGACCCCTCAGCCCCTGGGTCAGAGGACCCCCTGGCT---------------GGGATGGGTGAGC--CCCCAGTCTACCTCCTCGAGCCACGGAATGATGGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGACCCCACCAC--------CCCCGGCTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCGCAGGAGAACTTGGGACACTCCTTTCTCCCTGCCAGGCCTC-GCTGCCATGGTTTTGAACTTGTATGTGGGGTGAAGTATTTGAGGCCAGGCTCGCAGTTGAATGGGAGGAGCCCTGCACTGGGGGtagcccagtgag---tagacacagcctggtgcaggcagcctgggcctggctccaggtcctggccatcacgtccctcttgcgcgacccgggacaagtgacgt-----atgggccctgagtgcatgagggaagatgatggta-gagtctgcccaggatgttg-tgaggagcaaatgagagggtatgc------------------------------------------------------------------------ccccagc--------------------accctggaccagtctggcacgtggtCATCTTGGGCACTAGGACTGC--ATCCAG----CAGCTGCTCATCTGCCAACGCCCATGTTAGA----------------------------------GGATCTGTTTCCAGCCATGATGGGCAGTCTGAGTGATTC---CAGGAGGAT-TCCAGGGTTCTCAGTAGAAGTCTGGTCACCTTGGCTTTCTTCTCCGCAGCTCTGGGCAGAGTCAGGGGCCTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGGGCTTCGGGATTCCATGGTCTGATCCACCCTCCTAGCCTCTCTCCACACCTGTCTTCAGCACTCTTGGCCCTGTTTCCTGACCCTTTCGTGTTCTCCCAGCCTCTCCACATCTCGGAGTGT---CTCTTTCTCTCCCTGCTGGACTCCAGGATCCATCACCTTTGCCCTTCTTCCCTGTGCGACCCCCTGCCTGTCCCAATCAGGACTGTATGCTCATCCCAGCCATCTGGCCTGGCACCACCTACCCTGAGTCCACCCAGACTGGAGAACT
s panTro4.chr15              79979829 1275 +  99548318 ATAGCACCTGGGCCTGATTCTGGCAGTGGATTCTGTGAGGG--------------TCACCTCATGCTCCCAACTTCTCCCACACATCCAGGGTGGGCT-GAGAGGTTGTTGCGGCTTCAGCTGCCCAGCAGCAGGCCTGCAGGA---GCCACATGTGCAGCGAGTCAGCACTGGGG--CAGCCAGGAAACAAAAGGGCTCGGCTGCAGCCCAGGGACTGTTGGTGCCGGGATGAGGTGCATTGGACCCCTCAGCCCCTGGGTCAGAGGACCCCCTGGCT---------------GGGATGGGTGAGC--CCCCAGTCTACCTCCTCGAGCCACGGAATGATGGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGACCCCACCAC--------CCCCCGCTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCGCAGGAGAACTTGGGACACTCCTTTTTCCCTGCCAGGCCTC-GCTGCCATGGTTTTGAACTTGTATGTGGGATGAAGTATTTGAGGCCAGGCTCGCGGTTGAATGGGAGGAGCCCTGCACTGggggtagcccagtgag---tagacacagcctggtgcaggcagcctgggcctggctccagatcctggccatcacgtccctcttgcgcgacgcaggacaagtgacgt-----atgggccctgagtgcatgagggaagatgatggtaagagtctgcccaggatgttg-tgaggagcaaatgagaGGGTATGC------------------------------------------------------------------------CCCCAGC--------------------ACCCTGGACCAGCCTGGCACGTGGTCATCTTGGGCACTAGGACTGCTCATCTAGTTGGCAGCTGCTCATCTGCCAACGCCCATGTTAGA----------------------------------GGATCTGTTTCCAGCCAGCATGGGCAGTCTGAGTGATTC---CAGGAGGAT-TCCAGGGTTCTCAGTAAAAGTCTGGTCACCTTGGCTTTCTTCTCCGCAGCTCTGGGCAGAGTCAGGGGCCTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGGGCTTCGAGATTCCATGGTCTGATCCACCCTCCCAGCCTCTCTCCACACCTGTCTTCAGCACTCTTGGCCCTGTTTCCTGACCCTTTCGTGTTCTCCCAGCCCCTCCACATCTCGGAGTGT---CTCTTTCTCTCCCTGCTGGACTCCAGGATCCATCACCTTTGCCCTTCTTCCCTGTGCGACCCCCTGCCTGTCCCAATCAGGACTGTATGCTCATCCCAGCCATCTGGCCTGGCACCACCTACCCTGAGTCCACCCAGACTGGAGAACT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79930508 1267 +  99152023 ACAGCACCTCGGCCTGATTCTGGCAGTGGATTCTGTGAGGG--------------TCGCCTCATGCTCCCGACTTCTCCCACACACCCAGGGTGGGCT-GAGAGGTTGTCGTGGCTTCAGCTGCCCAGCAGCAGGCCCGCAGGA---GCCACGTGAGCAGCGAGTCAGCACTGGGG--CACCCAGAAAGCAGAAGGGCTGGGCTGCAGCCCAGGGACTGTTGGTGCTGGGATGAGGCGCATTGGACCTCTCAGCCCCTGGGTCAGAGGACCCCCTGGCT---------------GGGATGGGTGAGC--CCCCTGTCTACCTCCTCCAGCCACGGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGACCCCACCAC--------CCCCCGCTGACACTCTGCCCCGGGTGCAGGCCCATGGAGGCTCAGGGAACCCCAAGCCGCAGGAGCACTGGGGACACTCCTTCCTCCCCGCCAAGCCTC-GCTGCCATGGTTTTGAACTTGTATTTGGGGTGAAGTATTTGAGGCCAGGCTCGTGGTTGAATGAGAGGAGCCCTGCACTGggggcagcccagtgag---tagacatagcctggtgcaggcagcctgggcctggcttcagatcctggccatcatgtccctcttgcatgacctgggacaagtgatgt-----atgggccctgagtgtgtgaggggagatgatggta-gagtctgcccaggatgttg-tgaggagcaaatgagagggtatg-------------------------------------------------------------------------ccctagc--------------------acccgggaccagcctggcacgtggtCATCCTGGGCACTAGAACTAT--ATCCAA----CAGCTGCTCATCTGCCAACGTCCATGTTAGA----------------------------------GGATCTGTTTCCAGCCAGCATGGGCAGTCTGAGTGATTC---CAGGAGGAT-TCCAGGGTTCTCAGTAGAAGTCTGGTCACCTTGGCTTTCTTCTCCGCAGCTCTGGGCAGAGTCAGGGGCCTGTCACTGGCCAGGGGACTTAAGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGGGCTTTGGGATTCCATGGTCTGATCCACCCTCCCAGCCTCTCTCCACACCTGTCTTCAGCAGTCTTGGCCCTGTTTCCTGACCCTTTCGTGTTCTCCCAGCCTCTCCACATCTCGGAGTGT---CTGTTTCTCTCCCTGCTGGACTCCAGGATCCATCACCTTTGCCCTTCTTCCCTGTGCAACCCCCCGCCTGTCCCAATCAGGACTGTATGCTCATCCCGGACCTCTGGCCTGGCACCACCCACCCTGAGGCCACCCAGACTGGAGAACT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22713132 1268 - 121039945 ACAGCACCTCGGCCTGTTTCTGGCAGTGGATTCTGTGAGGG--------------TCGCCTCATGCTCCCGACTTCTCCCACACACCCAGGGTGGGCT-GAGAGGTTGTTGTGGCTTCAGCCGCCCAACAGCAGGCCCTCAGGA---GCCACATGAGCAGCAAGTCAGCACTGGGT--CAGCCAGGAAGCAGAAGGGCTGGGCTGCAGCCCAGGGACTGTTGGTGCTGGGATGAGGCGCATGGGACCCCTCAGCCCCTGGGTCAGAGGACCCCCTGGCT---------------GGGATGTGTGAGC--CCCCAGTCTACCTCCTCGGGCCACGGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGAACCCACCAC--------CCCCCGCTGACACTCAGCCCCGGGTAAAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCACAGGAGCACTTGGGACACTCCTTTCTCCCCGCCAGGCCTCGGCTGCCATGGTTTTGAACTTGTATTTGGGGTGAAGTATTTGAGGCCAGGCTCGTGGTTGAGTGGGAGGAGCCCTGCACTGggggcagcccagtgag---tagacacagcctggtgcaggcaacctgggcctggcttcagatcctggccatcacatctctcttatgcgacccggggccagtgacct-----atgggccctgagtgcatgaggggagatgatggta-gagtctgcccaggatgttg-tgaggagcaaaggagaGGGTATGC------------------------------------------------------------------------CCCCAGC--------------------ACCCTGGACCAGCCTGGCACGTGGTCATCTTGGGCACTAGGACTGC--ATCCAG----CAGCTGCTCATCTGCCAACACCCATGTTAGA----------------------------------GGATCTGTTTCCAGCCAGCATGGGCAGTCTGGGTGATTC---CAGGAGGAT-TCCAGGGTTCTCAGTAGAAGTCTGGTTACCTTGGCTTTCTTCTCCGCAGCTCTGGGCAGGGCCAGGGGCCTGTCACTGGTCAGGGGACTTAGGAGACCATGCAGA-CACCCACTCCACCCTGGGTCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGAGCTTTGGGATTCCATGGTCTGATCCAGCCTCCAAGCCTCTCTCCACACCTGCCTTCAGCAGTCTTGGCCCTGTTTCCTGACCCTTTCGTGTTTTCCCAGCCTCTCCACATCTCGGAGTGT---CTCTTTCTCTCCCTGCTGGACTCCAGGATCCATCACCTTTGCCCTTTTTCCCTGTGCGACCCCCCGCCTGTCCCAATCAGGACTGTATGCTCATCCTGGCCCTCTGTCCTGGCGCCACCTGCCCTCAGGCCACCCAGACTGGAGAACT
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108912258 1267 - 162156779 ACAGCACCTGGGCCTGATTCTGGCAGTGGATTCTGTGAGGG--------------TCGCCTCATGCTCCCGACTTCTCCCACACACCCAGGGTGGGCT-GAGAGGCTGTTGTGGCTTCAGCTGCCCAGCAGCAGGCCCACAGGA---GCCACACGAGCAACGAGTCAGCACTGGGG--CAGCCAGGAAACAGAAGGGCTGGGCTGTAGCCCAGGGACTGTTGGTGCTGGGATGAGGCGCATGGGACCCCTCAGCCACGGGATCAGAGGACCCCCTGGCT---------------GGGATAGGTGAGC--CCCCAGTCTACCTCCTGGAGCCACAGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGAGCCCACCAC--------CCGCTGCTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCGCAGGAGCACTTGGAACACTCCTTTCTCCCCGCCAGGCCTTGGCTGCCGTGGTTTTGAACTTGTATTTGGGGTGAAGTATTTGAGGCCAGGCTCGCGGCTGAATGGGAGGAGCCCTGCACTGGGGGCAGCTTAGTGAG---TAGACACAGCCTGGTGCAGGCAGCCTGGGCCTGGCTTCAGATCCTGGTCATCACGTCCCTCTTGTGTGACCCAGGGCAAGTGACAT-----ATGGGCCCTGAGTGTGTGAGGAGAGATGATGGTA-GAGTCTGCCCGGGATGTTG-TGAGGAGCAAATGAGAGGGTATGC------------------------------------------------------------------------CCCCAGT--------------------ACCCGGGGCCAGCCTGGCACGTTGTCATCTTGGGCACTAGAACTGC--ATCCAG----CAGCTGCTCATCTGCCAACGCCTGTGTTCGA----------------------------------GGGTCTGTTTCCAGCCAGCATGGGCAGTCTGGGTGATTC---CAGGAGAAT-TCCAGGGTTCTCAGTAGAAGTCTGGTCACCTTGGCTTTCTTCTCTGCAGCTCTGGGCAGAGCCAGGGGCTTGTCACTGGCCAGGGGACTTAGGAGACCACACAGaccacccaccccaccctgggTCTCCCAGCTGCCAGGCCCGCTCCTCTGAAATCTGGGTTTTGGGATTCCATGGTCTGATCTACCCTCCCAGCCTCTCTCCACACCTGCCTTCAGCGGTCTTGGCCCTGTTTCTAGACCCGTTCATGTTCTCCCAGCCTCTCCACATCTCGGAGTGT---C--TTTCTCTCCCTGCTGGACTCCAGGATCCATCACCTTTGCCCTTCTTCCCTGTGCAACCCCCCGCCTGTCCCAGTCAGGACTGTATGCTCATCCTGGCCCTCTGGCCTGGCACCACCTGCCCTGAGGCCACCCAGACTATAGAACT
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113737130 1379 - 132174527 ACAGCACCTG-----GATTCCTGCAGTGGATTCGGTGAAGG--------------TCGCCTCCTGCTCCCGACTTCTCCCGTATACCCAGGGGGAGCT-GACAGGTTGT---GGCTTCAGCTGCCCAGCAGCAGGCCCACAGGA---GCCACATGAGCAGCGAGTCAGCACTGGGGTCCAGCCAGGAAACAGAAGGGCTGGGCTGTAGCCCAGGGACTGTCGGTGCTGGGGTGAGGCACATTGGATCCCTCAGCCACCGGGTCAGAGGACCCCCTAGCT---------------AGGATGGGTGAGC--CCCCA-TTAATGTCCTTGAACCATGGAATGCTAGAGGGAAGGAAGGAA-CCCAGGGCC-AGCTGACCCCATCAC--------CCTCTGCCGACACTCTGCCCTGGGTGCAGGCCCAGGGAGGCTCAGGGAACCCCAAGCCGCCGGAGCACTTGGGGCACTCCTTTCTTCCCGCCAGGCCTCGGCTGCCATGGTTTTAAACTTTTATTTGGGGTGAAATATTTGAGGCTGGGCTCGCTGTTGAATGGGAGGAGCCCTGCCCTGggggcagcccagtgag---cagacacagcctggtgcaggcagcctagacttggcttgagatcctggccatcacgttcctcttgcgtggctcagggcaagtgacgg-----atgagtcctgagtgtgtgaggggagatgatggta-gagtctccctgggatgttg-tgaggagcgaatgagaGGGTATGCACCTGCTACCTGGGACCAGCCTGGCACGTGGTCATCTTGGGGTTGTGAGGAGTGAATGAGAGGGTGTGCACACCCGAGCCACACCCGAGGGCCATTTCTGCCCGGGACCAGCCTGGCACGTGGTCATCTTGGGCACTACGACTGC--ATGCAG----CAGCTGCTCCTCTGCCCACTCCCATGTTAGAGAGATCTGTTTCCCTGCCCACTCCCATGTTAGAGGGATCTGTTTCCAGCCAGCA-GGACAGTCTGGGTGACTC---CAGGAGGAT-TCCAGGGTCCTCAGTAGAAGTTTGGTCACCTTGGCTTTCTTCTCCGCAGCTCTGGGCACAGCCAAGGGCCTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACTGCTCAC-CCAGCCTGGATCTCCCAGCTGCCAGGCCC-CTCCTCTGAAATCTGGGCTTTGGGATCCTTCGGTCTGAGCCACCCTCCCAGCCTCGCCCCACACCTGCCTTCAGTGGTACTGGCT---GTTCCTGACTCTTTCATGTTCTTCCAGCCTCTCCACATCT-GTAGTGTTTCCTCCTCCTCTCCCTTCTGGACTCCGGGATCCGTCACCTCTG-CTTTCTTCCCGGTGCAG-TCCCTGCCTGGCCCACCCAGCACTGTG-GCTCAGCCTGGTTCT-TGGCCTGGCACCACCTGCCCTGAGACCTCCCAGATGGGAG-ACT
i calJac3.chr10             C 0 C 0
s canFam3.chr3               58206349 1076 +  91889043 -CAGCACGTGGGCCTGAATATGGCCCTGATTCTGGTGGGAGGTCTGGAGGACCCCTCCCCCTATACCCCCAACCTGTCACACACATATAGAATGGACCAGAGAGGCTTCTGTCACTCCAACTGCCC-------GGCCCACAGGACATGACACATG----GCAAGTTC-----------CAGCCAGGAGACAAA-------------------------------GCCAGAA-GAGG----------CCATCAGACCCCAAGTTGGAGGAGCCCCCAGGCGGGGTCTGAGGCAGAGGGGTGGGCGAGCCTCCCCAGCCCCTGTCTTGAA------------TTGCAGGACAGAAGGAGCCCCAGGGTTGGGCTGACCCTGCCCCCATCCTCACCCCAGCTGACACTTGGCCCCAAGGGCCAGGCCAG-----------------CCATCAGCAGGCGC-----------------CTTTCTGCCAGGACTCAGCTGCTGTGCTTTTGAACTTACAC-TGGGGTGAAGTA-TTGAGGTCAGGTCTGTAGATGGACGGG------CCTTCACTGGGGCCA-CCCAGCAAGGGATATGCGGGGCCC----CCAGCAGCCTGAGTCTGGCATTAGATCCCAACCATTAGTGTTCGCTGGTGGGACCCAGGGCAAGGGGTGTCCTGCCTCAGGCCTGCGTGTGCACAGAGAGGC----ATA-GGGTCTTCCTCCCAGGTGGTTGAGGAGCA---------------------------------------------------------------------------------------ACCAAGG--------------------AC-----------CTGGCCCATGATCATCTGGGGCAAAAGGATGGG--TCCCAG-----AGCTGCTCATTTGCTGACACCCGCTTTAGG----------------------------------GGGTCTGGTTTCCACCAGCATAGGTGGTCGGGGTGATTTGGGCAGAGGGGTCCCCAGGGCCCTCAGCAGGAGTCTAGTCTCAGAGGCTGTGTTCCCTGCAGCTCTGGGTGGGGCAAGTGGC------------------CCTAGGCAACCCCACAGACCATCCACCCCACCCTGGGCCCCACAGC-----------CTCCCTCAGAGGCTGA------------------CTG-------CCCCCAGCGTTGCCCCCTACCTCCC-------GCCCTGGCTGATGTGGTGGCCTACTCTGTCTTCTTCCAGTCT------GTCTTGTGGTGTGTCCTCTGTCCTTTCCTGTCAGAGCCCAGTGCCCATCACCTCTGTCCTTCT--------------------------------GACCCTCTGCTCATCT--GGCCCCCAACCTTGTACCAGCCACCCTCTAGCACCCCAGCCTGGAAAACT
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90184404  424 + 124595110 I
e chlSab2.chr29               1318019   12 +  24206276 I
e macFas5.chr7               61589937    0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I

a score=679603.000000
s hg38.chr15_KI270850v1_alt     25268 594 +    430880 GGAGGGATTTTGCCTCCCCATCTCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCATGGGTCCTGCCTCCTTCCA-TGCTTCTGCCCAAGTCGTGGCTGCCTGGGTCATC--CCCAGCCCCGCATGTCTGCATGGCTCAATTCTCCCCAGCCACTGCTGCCCC-ACAGAGGG-CCCCAAACC---------TTCCTCCAGGAC--AGCAATGAGCTG-TGGGTGGGCTGGTCAGCATGCCAGGGCACTCCTGCTGCTAAGCCGTTGTAGTGGCCGCCTAAGGTCCAGCAGGTACAGCAGGCTGGTCACTGG-TCCCAGAAGCAGTAG-CATGCCTGAGGGCTGTACAGAGTGAGGCAGGGGCAGAAGCAGGTGCCAGCTGGGCCTGGGCCGCCCTCCCCAGGG-CCC--C---GGACTCCACGCTCGCTGCCTCGTGGTG-----GTCTGGGCAGCCTTGTCTTCGCCACACCGCAGCAGCAGGAGCGTGTGGTGGACACAGATGGCACCTGCTCGTGTCTGCCAGTTTCCCCGCCACCGCTGCCAGGGAATGCCAGCTGGAGGAAGGCAGGAGTAGATAGGGTATGACAGAGGCTGGAGGCCAGCCCTGTTGGGGAGTGGGGGAAA
s panTro4.chr15              79981104 594 +  99548318 GGAGGGATTTTGCCTCCCCATCTCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCATGGGTCCTGCCTCCTTCCA-TGCTTCTGCCCAAGTCGTGGCTGCCTGGGTCATC--CCCAGCCCCGCATGTCTGCATGGCTCAATTCTCCCCAGCCACTGCTGCCCC-CCAGAGGG-CCCCAAACC---------TTCCTCCAGGAC--AGCAATGAGCTG-TGGGCGGGCTGGTCAGCATGCCAGGGCACTCCTGCTGCTAAGCCGTTGTAGTGGCCGCCTAAGGTCCAGCAGGTACAGCAGGCTGGTCACTGG-TCCCAGAAGCAATAG-CATGCCTGAGGGCTGTACAGAGTGAGGCAGGGGCAGAAGCAGGTGCCAGCCGGGCCTGGGCCGCCCTCCCCAGGG-CCC--C---GGACTCCATGCTCGCTGCCTCATGGTG-----GTCTGGGCAGCCTTGTCTTCGCCACACCGCAGCAGCAGGAGCGTGTGGTGGACACAGATGGCACCTGCTCGTGTCTGCCAGTTTCCCCGCCACCGCTGCCAGGGAATGCCAGCTGGAGGAAGGCAGGAGTAGATAGGGTATGACAGAGGCTGGAGGCCAGCCCTGTTGGGGAGTGGGGGAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79931775 604 +  99152023 ---GGGTTTTTGCCTCCCCATCTCCCCTGCCTGGCTAGAGG--------------CCCTAGGTCCTGCGGGTCCTGCCTCCCTTCATTGCTTCTGCCCAAGTCGTGGCTGCCTGGGTCATC--CCCAGACCTGCAAGTCTGCGTGGCTCAATTCTCCCCAGCCACTGCTGCCCC--CAGAGGG-CCCCAAACCTTCCTCCAGTTCCTCCAGGAC--AGCAATGAGCTG-TGGGCGGGCTGGTCAGCCTGCCAGGGCACTCCTGCTGCTAAGCCGTTGTGGTGGCCGCCTAAGGTCCAGCAGGGGCAGCTGGCTGGTCACTGG-TCCCAGAAGCAATAG-TATGCCTGAGGGCTGTACAGAGTGAGGCAGGGGCAGAAGCAGGTGCCAGCCGGGCCTGGGCTGCCCTCCCCAGGG-CTC--C---TGCTTCCATGCTCGCTGCCTTGTGGTGT-TGAGTCTGGGCAGCCTTGTCTTCGCCACACCGCAGCAGCAGGAGTGTGTGGTGGATACAGATGGTGCCTGCTCATGTCTGCCAGTTTCCCCACCACCGCTGCCAGGGAATGCCGGCTGGAGGAAGGCAGGAGTAGATAGGGTATGACAGAGGCTGGAGGCCAGCCCTGTTGGGGAGTGGGGGAAA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22714400 607 - 121039945 GGAGGGTTTGTGCGTCCCCATCTCCTCTGCCTGGCTAGAGG--------------CCCCAGTTCCCACAGGTCCTGCCTCCCTCCATTGCTTCTGCCCAAGTCGTAGCTGCCTGGGTCATC--CCCAGCCCTGCATGTCTGCGTGGCTCAATTCTCCCCAGCCACTGCTGCCCC--CAGAAGG-CCCCAAACCTTCCTCCAGTTCCTTCAGGAC--AGCAATGAGCCA-TGGGCAGGGTGGTCAGCATGCCAGGGCACTCCTGTTGCTAAGCTATAGTGGTGCCCGCCTAAGGTCCAGCAGGGGCAGCAGGCTGGTCACTGG-TCCCAGAAGCAATGG-CATGCCTGAGGGTTGTACAGAGTGAGGCAGGGGCAGAGGCGGGTGCCAGAAGGGCCTGGGCTGCCCTCCCCAGGG-TCC--C---TGCTTCCGTGCTCCCTGCCTCATGGTGT-TGTGTCTGGGCAGCCTTGTCTTTGCCACACCACAGCAGCAGGAGTATGTGGTGGATACAGATGGCACCTGCTTGTGTCTGCCAGTTTCCCTGCCACTGCTGCCAGGGAATGCCAGCTGGAGGAAAGCAGGAGTAGATAGGGTATGACAGAGGCCGGAGGCCAGCCCTGTCGGGGGGTAGGGGAAA
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              108913525 584 - 162156779 GGAGGGTTTGTGCCTCCCCATGTCCCCCGCCTGGCTAGAGG--------------CCCCAGGTCCCACGGGTCCTGCCTCCCTCCGTTGCTTCTGCCCAAGCCGTGGCTGCCTGGGTCATC--CCCAGCCCTGCATGTCTGCGTGGCTCAATTCTCCCCAGCCACTGCTACCCC--CAGAAGG-CCCCAAACC---------TTCCTCCAGGAC--AGCAGTGAGCCA-TAGGTGGGGTGGTCAGCGGGTTAGGGCACTCCTGCTGCTAAGCCATAGTGGTGTCTGCCTAAGGTCCAGCAGGGGCAGCAGGCTGGTCACTGG-TCCCAGAAACAATAG-CAAGGCCAAGGGCTGTACAGAGTGAGGCAGGGTCAGAAGTGGGTGCCAGCCGGGCCTGGGCCGCCTTCCTCAGGG-CCC--C---CACCTCTGTGCTCCCTGCCTCGTGGTGT-TGTGTCTGGGCAGCCTTGTCTTCACCAGACTGCAGCAGCAGGAGTGTGTGGTGGACACAGATGGCGCCTGCTCGTGTCTGCCAGTTTCCCTGCCACCACTGCCAGGGAATGCTGGCTGGAGGAAGACAGGAGT--------------GGAGGCCGGAGGCCAGCCCTGTCGGTGGGTGGGGGAAA
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             113738509 580 - 132174527 GGAGGATTTTTGCCTCCCTATCGCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCGTGGGTTATGTTTCTGT----TGTTTCTGCCCAAGTCGTGGCTGCTGGGGTCAT---CTCAGTCCTGATTGTCCACGTGGTTCAATTCTCCCCAG-AACTGCTGCCCC--CAGAAGGCCCCCAAACTTTTCTCCAGTTTCTCCAGGAC--AGCAAGGAGCTGAGGGGCAGGCTGGTCAGCATGCCAGGGCACTCCTGCTG---------------------CTAAGGTCCAGCAGGGGCAGCAGGATGGACACTGG-GCCCAGACGCAATAGCCACACCCGAGGGCCATGCAGAGTGAGGCAGGGGCAGAAGTGGGTGCCAGCTGGGCCTGGGCCACCCTCCCCAGGGCCCC--C---CACCTGCTTGCCTCCTGCCTTGTGTTGTGTCTGGGTGGGCAGCCTTGTCTTCACCACACAGAGGCAGCAGGAGTGTGTGGTGGGTACAGATCGTGCCTGCTCTCGTCTGCCTTGTTCCTCACCACCGCTGCCAGGGAATGC-GGCTGGAGGAAGGCGGGAGTAGATAGGGTGTGACAGAGGCT-AAGGCCAGCCCTG-CAGGGGGTGGGGGA--
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90184828 449 + 124595110 GGATGAATCTTGTCCCCAAGTCTC-----CCTGGCTTGGGGTTGTCCTTATCTCTCACTGTGTCCCACAGATCTTAGCTCCAC----TGCTTCCAACCAAGTCCTTTCTGCCTGGTTGA----CCTAGG--TGCCTGTTTCTGTGGCTCAATTCTCTTTAG--------GCTCT------GGG-CCCTGGACCCTCCTCCCATTCCAGAAGGACCAAAAAACGAGCCC-CAGG-AGGCTGG-CAGCATGCTCCTACTCTCCCGTT----------------------------TCCAG-----ACAACC------TCACTGT-----------------CA----------------------------GGGCAGAGATGGTTG--GGTGGGACTTGGGAGGCCATTCCCAAGA-GCC--CTGTTGCCCCCTTGCTCCTTGCCTGCTGGCGG----------------------------CACTACATCGGAAGGAGTGTGTGATGGTCATGGGCTGGCCCTGCTCATGCTGGCCCATTCTCTTGTCA---CTGTCCTGGAATGCTGACTAGGGGAAGGCAGAAGAAA----------------------------------TGGGCAGTAAGAAG--
i mm10.chr9                 I 424 C 0
s canFam3.chr3               58207425 411 +  91889043 GGAGGGTTT----CTCCCCA-----------------------------------CCCT------------------CTCCTT-----------------------GCTGCCTGGGCCAACTACCCATCACCCCCAAT--------CTCAGCTCTCACCAGCCATTGCTGCCCTAAGGGAGGT-CCCTAGACACTTGTCTGACCCCTGCAGGAC--AGCAGTGAGCCC-TGGGCTGGTTGGTCAATGTGC---------------------------------------AGGGCCTGGCAATGGTGTTGGGATAGACACTGGCCCCCAGAGGCCACAGCTGTGCACAAAGGGCCCATGGACAGATGCGCTGGCAGAGAAGGGC-CAAGCCCAGCCTGGGATGCCCTCCCCAGGG-CCCTTC---TGCATCCGTGTTCCCTGCCTGCTGCTGT-GGCGTCTGGGCAGC------------------------------------------------------------------CCGGGTCCCCTGC----ACTGCCAGGGAAGGCTGGCAGAGGGCAGACAGGAGTGAATGAGGA-----AGTGATAGGGTGGCAGCGCTATC---------------
i canFam3.chr3              C 0 C 0
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   0 + 171882078 C
e rheMac3.chr7              112811653 3213 - 170124641 I

a score=-511.000000
s hg38.chr15_KI270850v1_alt     25862 2 +    430880 CA
s panTro4.chr15              79981698 2 +  99548318 CA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              79932379 2 +  99152023 TA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22715007 1 - 121039945 C-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61589937 2 + 171882078 CG
i macFas5.chr7              C 0 C 0
s calJac3.chr10             113739089 2 - 132174527 CA
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90185277 2 + 124595110 CA
i mm10.chr9                 C 0 C 0
e canFam3.chr3               58207836 0 +  91889043 C
e chlSab2.chr29               1318019 12 +  24206276 I
e papAnu2.chr7              108914109 0 - 162156779 C
e rheMac3.chr7              112811653 3213 - 170124641 I

a score=84928.000000
s hg38.chr15_KI270850v1_alt     25864 51 +    430880 GGGGACAGGCACGGA-TGCCCTAGGCTCTCTCCCAGGGGA---GGGGCTGCTTTC
s panTro4.chr15              79981700 50 +  99548318 GGGGACAGGCACGGA-TGCCCTAGGCTCTCTCCCA-GGGA---GGGGCTGCTTTC
i panTro4.chr15             C 0 M 1310
s ponAbe2.chr15              79932381 51 +  99152023 GGGGACAGGCACGGC-TGCCCTGGGCTCTCTCCCAGGGGA---GGGGCTGCTTTC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22715008 50 - 121039945 -GGGACAGGCACAAC-TGCCCTGGGTTCTCTCCCAGGGGA---GAGGCTACTTTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61589939 51 + 171882078 GGGGACAGGCATGGC-TGCCCTGGGCTCTCTCCCAGGGGA---GGGGCTGCTTTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108914109 48 - 162156779 -TGGACAGGCACGGC-TGCCCTGGGCTCTCTCCC--GGGG---GTGGCTGCTTTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1318031 51 +  24206276 GGGGACAGGCATGGC-TGCCCTGGGCTCTCTCCCAGGGGA---GGGGCTGCTTTC
i chlSab2.chr29             I 12 C 0
s calJac3.chr10             113739091 49 - 132174527 GGGGACAGGCATGGC-TG-CCTGGGCTCTCTCCCAGGGGA---G-GGCTGCTTTC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90185279 36 + 124595110 GAGGGCTGGT--------CCCTCGGGTC--------AGGATATGAGGTGGCT---
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58207836 24 +  91889043 ----CCCGGCCCAGCATGTCCCTGGCCC---------------------------
i canFam3.chr3              C 0 C 0
e rheMac3.chr7              112811653 3213 - 170124641 I

a score=169049.000000
s hg38.chr15_KI270850v1_alt     25915 87 +    430880 CAGACCTTGCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GGGTGGGGCCGTCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATATT
s ponAbe2.chr15              79932432 87 +  99152023 CAGACCTCACCCTTCCACAGATGACCCGCAGTCTCTGCCT-GGGTGGGGCCGTTGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               22715058 85 - 121039945 CAGACC--GCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GGGTGGGGCCGTTGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i nomLeu3.chr6              C 0 I 9922
s macFas5.chr7               61589990 87 + 171882078 CAGACCTCGCCCTTCCACAGACGACCCAAGGTCTCTGCCT-GCGTGGGGCCGTCGGAGG--CTCTGTTGTGTCAACTGTGAAGTGATGTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108914157 87 - 162156779 CAGACCTCGCCCTTCCACAGATGACCGGAGGTCTCTGCCT-GGGTGGGGCCATCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1318082 87 +  24206276 CAGACCTCACCCTTCCACAGACGACCCGAGGTCTCTGCCT-GTGTGGGGCCATCGGAGG--CTCTGTTGTGTCAACTGTGAAGTGATGTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113739140 87 - 132174527 CAGACCTCCTCCTTCCATAGATGACCCGAGGTCTCTGCCT-GGGTGGGGCCATCGGAGG--CTCTATTGTGTCAACTGCGATGTGATGTT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90185315 51 + 124595110 ---GGGTAGCTTTTCCTCAGA--------GGTCTCT----------------------------TGTTGTGGCAGCTGAGGTGTGACAGT
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58207860 85 +  91889043 ---AGCGTGTCC-CCCACAGA-GACCCCAGATCTCAGCCTAGGGTGGGGCCCACAGAGGCACACTGCTGTATCAGCTGTGAAGTGATGCT
i canFam3.chr3              C 0 C 0
e rheMac3.chr7              112811653 3213 - 170124641 I
e panTro4.chr15              79981750 1310 +  99548318 M

a score=11657.000000
s hg38.chr15_KI270850v1_alt     26002 10 +    430880 CTCCGGATCC
s ponAbe2.chr15              79932519  9 +  99152023 C-CCGGATTC
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7               61590077 10 + 171882078 CTCTGGATCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              108914244 10 - 162156779 CTCTGGATCC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               1318169 10 +  24206276 CTCTGGATCC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113739227 10 - 132174527 CTCCAGATCC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  90185366  7 + 124595110 TTCCAGA---
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58207945 10 +  91889043 CTCCAGATCT
i canFam3.chr3              C 0 C 0
e rheMac3.chr7              112811653 3213 - 170124641 I
e nomLeu3.chr6               22715143 9922 - 121039945 I
e panTro4.chr15              79981750 1310 +  99548318 M

a score=2432916.000000
s hg38.chr15_KI270850v1_alt          26012 1279 +    430880 TTGTCGGGCCTGGCTCCAGGGTCTGGGCTCAGACACGGAGGCTGCAGGG--TCGGAG-AGCAGGGCCACATGAGGGTTTGGCGGTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCT------------------------------------------------------G------------GCAGCGTGTGCAGAGGCCTGGGA-TTGGGGTTG------------------------------------GGGTTGTTT--AGCCAGCTGGAGTGCCCAGGAGGTGAGATGAGATTGGCTGGGAGGGCCTGTGCTACTGGCT--GCAGGTGGAGGATCGGCTGAGCCGAGCGGGGAGGCTGGAGTT-TCCTACAGTTGTAGGGCTCTGTGCCCCCTCCCACCTCTCCTCCTCTCCTGGCCCCACCGAGGCTTCTCCGATGGGTCTCACAGGCTGCGC-----CC--CC---------------CTCCATCCTCCCGTCCCATCTCTAGCCATGGGTGGAGCCTGTGCCTGGATGACCCGCCTGCCAAGGACATCATTGACTTCCCATCAGTGCTGCCTGGGGTCCTCTATGATGTGAGCCACCAGTGCCACCTCCAGTATGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTGTGGGGACCCGACAGGAGGGCTTAGGGGACAGCTTTCACCAGCCTGTGGATGCCAGCTTGGGAGCAACCTCGCCTGGGCT---GGGCTACGCCCCTGAGTGACACTGTGAGACGTCAagtggcctgtgggagaggccagg-gatgggcggccacagacccagctctgaattctgggtcaa------------ccatggaccgactgtgacccctcgggcaagtc----ccttcgcctc-tctggagctGGCTCATA----AGAGGGAAAAGGA------ACCCCTG---TGGGGAGGGTCTATTTATCCTGGCGAAGATCG----CCTGAAG--------TGATCTTCTAACAGGAGTGTTT-----CCAGAGGAGGCGC-T--GGGCCGGGAGAGGTGTGGACAGCTGAGGACCACTCT---------------GAGCAGTGCAGCCC----CGGGCGCCCCACACCACCACGTGGTCTGGGGAGGAAGGTGGGA--------------GCAGACACACAAGAAGGGAC-CTCTGGGGGTCTGTGGGCC-------------------CCTGCCATGTGGAGGGGTGCCCA-GGGACCC-----TTGGGGACAG--GGAGGGGGGCAGGGTGGGTG----------------------------------GCGGCACTGGGGAGG---GGG--TGAGGCTATGGCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCATCCGGTGTGGGGAGAATAAGGTA-GGCGATGTTCCCAGTCCCGGCAGTG---GATGT---------GTGAGAGGCCAGACCTCCTGCTGTGACCGGGCC
s ponAbe2.chr15                   79932528 1267 +  99152023 TTGTCAGGCCTGGCTCCAGGGTCTGGGCTCAGACACGGAGGCTGCAGGG--TCGGAG-AGCAGGGCCACATGATGCCTTGGTGGTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCT------------------------------------------------------G------------GCAGCATGTGCAGAGGCCTGGGA-TTGGGGTTG------------------------------------GGGTTGTTT--AGCCAGCTGGAGTGCCCAGGAGGTGAGATGAGAGAGGCTGGGAGGGCCTGTGCTGCTGGCT--GCGGGTGGAGGATCGGCTGAGCTGAGCAGGGAGGCTGGAGTT-TCCTACAGTTGTAGGGCTCTGTGCCCCCTCCCACCGCTCCTCCTCTCCCGGCCCCACTGAGGCTTCTCCGATGGGTCTCACAGGCTGTGC-----CC--CC---------------CTCCATCCTCCCGTCCCATCTCTAGCCGTGGGTGGGGCCTGTGCCTGGACGAACCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCGCCTGGCATCCTCTATGATGTGAGCCACCAGTGCCGCCTCCA----GGGACCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTGTGGGGACCTGGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGAAACCTCGCCTGGCCT---GGGCTGCGCCCCTGAGTAACACTGTGAGACGTCAAGTGACCTgtgggagaggccagg-gatgggcagccacagacccagctctgaattctgggtcaa------------ccatggaccaactgtgacccttcggacaa------------gcctc-tctggagttggctcatA----AGAGGGAAAAGGA------ACCCCTG---TGGGGAGGGTCTATTTATCCTGGAGAAGATCG----CCTGAAG--------TGATCTTCTAACGGGGGTGTTT-----CCAGAGGAGGGGC-T--GGGCCAGGAGAGGTGTGGACAGCTGGGGACTGCTGT---------------GAGCAGTGCATCCC----CAGGCGCCCCGCACCACCACGTGGTCCGGGGAGGAAGGTGGGA--------------GCAGACACACAAGAAGGTAC-CTCTGGGGGTCTGTGGGCC-------------------CCTGCCACGTGGAGGGCTGCCCAGGGGACCC-----TTGGGGACAG--GGAGGGGGGCAGGG-GGGTG----------------------------------GCAGCACCAGGGAGG---GGG--TGAGGCTATGGCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACACTCTGGCGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAATAAGGTA-GGGGATGTCCCCAGTCCCGACAGTG---GGTGT---------GTGAGAGGCCAGACCTCCTGCTGTGACCGGGCC
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random         0 1268 -     28805 TTGTCGGGCCTGGCTCCAGGGTCTGGGCTCAGACACAGAGGCTGCAGGG--TCAGAG-AGCAGGGCCACATGACGGCTTGGCGTTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCT------------------------------------------------------G------------GCAGCGTGTGCAGAGGCCTGGGA-TTGGGGTTG------------------------------------GGGTTGTTT--AGCCAGCTGGAGTGCCTAGGAGGTGAGATGAGAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GCAGGTGGAGGATCGGCTGAGCCGAGCAGGGAGGCTGGAGTT-TCCTACAGTTGCAGGGCTCTGTGCCCCCTCCCACCTCTCCTCCTCTCCCGGCCCCACCGAGGCTTCTCCGATGGGTCTCACAGGCTGCAC-----CC--CC---------------CTCCATCCTCCCGTCCCATCTCTAGCCGTGGGTGGGGCCTGTGCCTGGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTTGGTGCTGCCTGGTGTCCTCTATGATATGAGCCACCAGTGCCGCCTCCAGTACGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTGTGGGGACCCGGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCGT-------------GGAGGAACCTCGCCTGGCCT---GGGCTGCGCCCCTGAGTGACACTGTGAGACGTCAagtggcctgtgggagaggccagg-aatgggcagctacagacccagctctgaattctgggtcaa------------ccatggaccaactgtgacccttcagacaagtc----ccttcacctc-tctggagctGGCTTATA----AGAGGGAAAAGGA------AGCCCTG---TGGGGAGGGTCTGTTTATCCTGGCGGAGATCG----CCTGAAG--------TGATCTTCTAACGGGAGTGATT-----CCGGAGAAGGGGC-T--GGGTCGGGAGAGGTGTGGACAGCTGGGGACCGCTCT---------------GAGCAGCGCAGCCC----TGGGCGCCTCACACCGCCACATAGTCAGGGGAGGAAGGTGGGA--------------GCAGACACACAAGAAGGGAC-CTCTGGGGGTCTGTGGGCC-------------------CCTGCCATGTGGAGGGGTGCCCAGGGGACCCT----TTGGGGACAG--GGAGGGGGGCAGGGTGGGTG----------------------------------GCAGCACGGGGCAGG---GTG--TGAGGGTATGGCCCATGCCCTCCTCCTTGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAACAAGGTA-GGGGATGTCCCCAGTCCCGGCGGTG---GGTGT---------GTGAGATGCCAGACCTCCTACTGTGACCGGGCC
i nomLeu3.chr6_GL398151_2_random n 9922 C 0
s macFas5.chr7                    61590087 1271 + 171882078 TTGTCGGGCCTGGCTCCAGGGTCTGGGCTCAGGGACGAAGGCTGCAGGG--TCAGAG-AGCAGGGCCACATGAGGGCTTGGCGGTCCAGGAGGCCT--------------------------TCTGAGGAAAGGGCCCT------------------------------------------------------G------------GCAGCGTGTGCAGAGGGCTGGGATTTGGGGTTG------------------------------------GGGTTGTTT--AGCCAGCTGGAGTGCCCAGGAGGTGAGATGAGAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGAACCAAGCGGGGAGGCTGGAGTT-TCCTACAGTTGTAGGGCTCTGTGCCCTCTCCCA---CTTCTCCTCTCCCAGCCCCACAGAGGCTTCTCCGATGGGTCTCACAGGCTGCG------CC--CC---------------CTCCATCCTCCCGTCCCATCTCTAGCCGTGGGTAGGGCCTGTACCTAGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCAGTGCTGCCTGGCGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTACAGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCTGATGTGGGTGTGGGGGTGTGGGGACCTGGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGTAACCTCACCTGGCCT---GGGCTGCACCCCCGAGTGATACTGTGAGACATCAGGTGGCCTgtgggagaggacagg-gatgggcggccacatacccagctctgaattctgggtcaa------------ccatggaccaactgtgacacttccggcaagtc----ccttagcctc-tctgGAGCTGGCTCATA----AGAGGGAAAAGGA------ACCCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATTG----CCTGAAG--------TGATCTTCTAACGGGAGTGTTT-----CCAGAGGAGGGGC-T--GGGCCCGGAGAGGTGGGGACAGCTGGGGACGGCTCT---------------GAGGAGCACAGCCC----TGGGCGCCCCACACCACCACATGGTCCGGGGAGGAAGGTGGGA--------------GCAGGCACACAAGAAGGGAC-CTCTGGGGGTCTGTGGGCC-------------------CCTGCCATGTGGAGGGGTGCCCAGGGGACCC-----TTGGGGACAG--GGA-GGGGGCAGGGTGGGTG----------------------------------GTGGCACTGGGGGGG-----G--TGAGGGTATGGCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACAATCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGAATGCAGCCGTGGACAGCACCCGGTGTGGGGAGAATAAGGTA-GGGGATGTCCCCAGTCCCGGCGGTG---GGTGT---------GTGAGACGCCAGA---CCTGCTGTAACCAGGCC
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108914254 1274 - 162156779 TTGTTGGGCCTGGCTCCAGGGTCTGGGCTCAGGGACGGAGGCTGCAGGG--TCAGAG-AGCAGCGCCACATGAGGGCTTGGCAGTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCT------------------------------------------------------G------------GCAGCGTGTGCAGAGGGCTGGGA-TTGGGGTTG------------------------------------GGATTGTTT--AGCCAGCTGGAGTGCCCAGGAGGTGAGATGAGAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGAACCGAGCGGGGAGGCTGGAGTT-TCCTATAGCTGTAGGGCTCTGTGCCCCCTCccacctctcctcctctcccGGCCCCACTGAGGCTTCTCCGATGGGTCTCACAGGCTGCG------CC--CC---------------CTCCATCCTCCCGTCCCATCTCTAGCCGTGGGTGGGGCCTGTGCCTGGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCACCTGGCGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTACGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCTGGTGTGGGTGTGGGGGTATGGGGACCCAGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCATGGATGCCAGCCTGGGAGTAACCTCGCCTGGCCT---GGGCTGCGCCCCCGAGTGATACTGTGAGACGTCAAGTGGCctgtgggagaggccagg-gatgggCGGCCACAGACCCAGCTCTGATTTCTGGGTCAA------------CCATGGACCAACTGTGACACTTCGGGCAAGTC----CCTTAGCCTC-TCTGGAGCTGGCTCATG----AGAGGGAAAAGGG------TCCCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATCA----CCTGAAG--------TGATCTTCTAACgggggtgttt-----ccagaggaggggc-t--gggccggGAGAGGTGGGGACAGCTGGGGACGGCTCT---------------GAGGAGCACAGCCC----TGGGTGCCCCACACCACCACATGGTCCGGGGAGGAAGGTGGGA--------------GCAGGCACACAAGAAGGGAC-CTCTGGTGGTCTGTAGGCC-------------------CCTGCCATgtggaggggtgcccaggggaccc-----ttggggacag--gga-gggggcagggtgggtg----------------------------------gcggcactgggaggg----cg--tgagggTATGGCCCATGCCCTCCTCCTTGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAATAAGGTA-GGGGATGTCCCCAGTCCCGGCGGTG---GGTGT---------TGGAGAGGCCAGA---CCTGCTGTGACCAGGCC
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1318179 1269 +  24206276 TTGTCGGGCCTGGCTCCAGGGTCTGGGCTCAGGGACGGAGGCTGCAGGG--TCAGAG-GGCAGGGCCACATGAGGGCTTGGCGGTCCAGGAGGCCT--------------------------TCTGAGGAAAGGGCCCT------------------------------------------------------G------------GCAGCGTGTGCAGAGGGCTGGGA-TTGGGGTTG------------------------------------GGATTGTTT--AGCCAGCTGGAGTGCCCAGGAGGTGAGATGAGAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGAACCAAGTGGGGAGGCTGGAGTT-TCCTATAGCTGTAGGGCTCTGTGCCCCCTCCCA---CTTCTCCTCTCCCGGCCCCACTGAGGCTTCTCCGATGGGTCTCACAGGCTGCG-------C--CC---------------CTCCATCCTCCCGTCCCATCTCTAGCCGTGGGTAGGGCCTGTGCCTAGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCAGTGCTGCCTGACGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTATGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGATGTGGGTGTGGGGGTGTGGGGACCTGGCAGGAGGGCTTAGGGGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGTAACCTCGCCTGGCCT---GGGCTGCGCCCCCGAGTGATACTGTGAGACATCAGGTGGCCTgtgggagaggacagg-gatgggcagccacatacccagctctgaattctgggtcaa------------ccatggaccaactgtgacacttccggcaagtc----ccttagcctc-tctgGAGCTGGCTCATA----AGAGGGAAAAGGA------ACCCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATTG----CCTGAAG--------TGATCTTCTAACGGGAGTGTTT-----CCAGAGGAGGGGC-T--GGGCCCGGAGAGGTGGGGACAGCTGGGGACGGCTCT---------------GAGGAGCACAGCCC----TGGGCGCCCCACACCACCACATGGTCTGGGGAGGAAGGTGGGA--------------GCAGGCACACAAGAAGGGAC-CTCTGGGGGTCTGTGGGCC-------------------CCTGCCATGTGGAGGGTTGCCCAGGGGACCC-----TTGGGGACAg--gga-gggggcagggtgggtg----------------------------------gtggaactgggaggg-----g--tgagggTATGGCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACAATCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGAATGCAGCTGTGGACGGCACCCGGTGTGGGGAGAATAAGGTA-GAGGATGTCCCCAGTCCCGGCGGTG---GGTGT---------GTGAGACGCCAGA---CCTGTTGTAACCAGGCC
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113739237 1278 - 132174527 TTGTCGGGCCTGGCTCCGGGATCTGGGCTCAGGGATGCAGGCTGCAGGG--TTGGAG-AGCAGGGCCACATGAGGGCTTGGTGATTCAGGAGGTCT--------------------------TCGGAGGGAAGCGCCCTGGGGCTGCATCTGGAGGGAAGGCTGCAGCCATAGGAAGGCTGCCACGTGGAGGCG------------GCATCGTGTGCAGAGGCCAGGCA-CTGGGGCTG------------------------------------CGGTTGTTG------AGCTGGAGTGCCCAGGAGGTGAGATGAGCGCGGCCGGGAGGACCTCTGCTGCTGGCT--GCAGG-------GTGGCTGAGGCAAGCGGGG-GTCTGGAGTTCTCCTGCAGTGGTGGGGCTCTGTGCCACTCC------CTCCTCCCCTCCCAGCCCAGCTGAGGCCTCTCCGGTGGGTCTCACAGGCTGCC------CCGGCT---------------CACCCCTCTCCTGTCCCATCTCTAGCCGAGGGTGGGGCCTGTGTCTGGATGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCACCCGGCGTCCTCTATGATGTGAGTCACCAGTGCCGTCTCCAATACGGGGCCTACTCTGCCTTCTGTGATGACATGGATGTAAGT-GGGCTAGGGTGGGTATGAGGGCATGGGGACCCGGCAGGAGGCCTCGGGGGGCAGTCCTCACCAGCCCATGGATGCCAGCCTGGGAGGAACCTCGCTTGGCCT---GGGCTGC-----------ACACTGTGACACGTCTGA-GGCCTgtgggagaggccagg-gatgggaagccacagacctggctctgaattctgggtcaa------------ccatggatccactgtga---------caagtc----ccttagcctc-cttggggctGGCTTTTA----AGAGGGAAAAGGA------ACCCATG---TGGGGAGGGTCTGTTTATCCTGGAGAAGACTG----CCTGGAG--------TGATCTTCTAATGGGAGTGTTT-----TCAGAGGTGGGGC-T--GGGCCAGGAGAGGGCTGGACAGCTGGGG---------------------------AGTGCAGCCC----CGGGCCCCCTAAACCACCACAGGGTCTGGAGAGGAAGGTGGGA--------------GCAGACAC---AGAAGGGAC-CTCTAGGGGTCTGTGGACC-------------------CCTGCCATGTGGAAGGGTGTCCAGGGGGCCC-----TTGGGGACAG--GGT-GGGGGCAGGGCAGGTG----------------------------------GTGGCATAGGGGTGGGTGGGG--TAAGGGTGTGGCCTGTGTCC-CCTCCTTGCAGAATGTCTGCCACACACTTTGGTGCTCTGTCGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGATGGCACCCGGTGTGGGGAGAACAAGGTA-GGAGGTG--CCTAGTCCCAGCGGCG---GGAG-----------GGAGAGGCCAGACCTCCTGCTGTGTCCAGGCC
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90185373 1246 + 124595110 -------GCCTGGCCCAAGGGTCCCAGC--------AGGAGCTGCAGGA--GCTAAG-AGCATAACCACTTGAGGATTGGGTGGACC---AGGCCT--------------------------TTGGAAGATAGGTGCCA------------------------------------------------------GAGTCTCTGTGGTGGGGCACGTGCCAAGGCCTGCCT-GTGGGGGTG------------------------------------GGGTATTTGTCAGCTGGCTGGAGATCT-----GGCCAGATGAGAGAGGTCTTCAGGGCCACCTTGGAAGGCT--GGGGTCACATGACCTGCTGG--CTAGGTGGAAGACTGTCATT-TTCT-----CACCAGGTTCACAAGTCCTTCCTAGCTCTTCTACCC--------------AGGCTTCTCCCATGGGTCT--CAGGCTGCACTCGTGCC--CTAGGGACCTCAAGTTATTCTCTCTTCCTTTTTTTTTTCCAGCCGTGGGTGGGGCCTGTGCTTAGATGACCGTCCATCCAAGGATGTCATTGCACTCCCCTCGGTGTTGCCCGGTGTCCTGTATGATGTGAACCACCAGTGCCGCCTTCAGTATGGGTCTCACTCTGCCTACTGTGAGGACATGGATGTGAGT-----------------GAGGGCATG-----------AGAGGCATAGGCGGGTGGCCCTCACCAATCTGACAATGCCAGGCTCAGAGAAACTCTGCCTGGCTTGGGGGGTGGTGCCTTCAAGGGGCATGGTAATACCTAATGTGACTTGTGGCCGAGGCCTggctttggatgggcacaggctcaggtctggattctatgtcaa------------cccttaggtgactttga--------acaagtc----cctcag-ctc-tctggacttGGCATAGA----AGAAGGGAAAAAAAAAATCAGCCCTT---CAGGG------------TCCCAGAGAGGTTCT----TGTAAAAATATGACCTGACCTTCTATCTTGAATGTTT-----CAGGAGGTATAGC-CTGGGGCTGGAAGAGGT--GGCCAGCTGGAGACAGCTGTCTGCACCAACCCAGCCTGGAGGGCAGCCCCTTTCAAAGGCCCCATGATATCATGTGACTGAGGGAGAGGGGCCAAAGGAGTCTCGAGTTTGCACACTCACAGGATGGG-------------CTGT----------------------------CCCTGTGGAAATGTGTCCGGGGTGTTC-----TTGGGGGACC--GTA--GGGACAGAGCGGGTG----------------------------------CTGTCCCTGGGGAAC---GTGTCTGAGGGTAATGTATGTG----CCTCTTTGCAGGATGTCTGCCACACACTATGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCGGCTGTGGATGGCACGAGCTGTGGGAAGAATAAGGTGCGTGGGAAACCTCAAGCCTGTCGGAGTATGGGGT---------CTGGGAGGCTGTC---TTTCCTCTGCCCGTGCC
i mm10.chr9                      C 0 I 103
s canFam3.chr3                    58207955 1275 +  91889043 -------------------------GGGGCGGGGGTGGAGGCTGCAGGAACTCAGAGCAGCAGGGCCAGGGGAGGGCTGGGCG-TAGGGGAGGCTTCCCTGGCGGTGCCCTTGGGATGGGTCTCTGGGGCAGAGTTCAT------------------------------------------------------G------------GTAGTGTGTGCAGAGCACTGCAG-GTGGAGCCAGCAGCTTATGCAAATGTGTGGCCCCAGGAGGGGGGTGAGTTGTTT--AGTGAGCTAGAGTGCCT-GGAGGTGA---AGGGGAGAGTGAGAGGGCCCCAGATGCTAGGTTGGGGGTTGGAGGGTGAACTGGGATAAGCAAGAAGGCTGCCTTT-TGCT-----TGCAAGGTTTAGTGTTTTATGCCCCCTTTTCTCCTC--------------------------------------------------CT--CC---------------CTTC--------------CCTGCAGCCGGGGTTGGGGCCTGTGCTTAGATGACACTCCCACCAAGGATGTCATTGACTTCCCCTCTGTGCCCCCCGGGGTCCTCTACGATGTGGGCCACCAGTGCCGCCTCCAATACGGGGCCTACTCTGCCTTCTGTGAAGACATGGACGTGAGTG----TGGGATGGGCATGGGGT-------------------------GGGGGCTGC-CTCCCCAGCCTACAGCAGCCG------------------CTGGCCT---GAGCTTGGCCATACAG-GATACTGGGAGACACC--GTGGC-TGTGGGATCAGCTGTG-GCTGGGTGGCCACAGACCCAGGTCTGAATTCTGGGTGGAGCCCCTCACCTCCCAAGGCCAGGTTATGA-------GACAAAACAAAACCTACGCTGCATATAGACTTGGGGGAGACCATAGACTCAGAGGGG------ACCCTAGACATGGGGAAACTGTA---GACCTAGGGAAGATCGTAGACCTGGGG--------GGGACCATAGACATGTGTGATTATAGACCTGAGGGGGACCAT--AGACCTGGGGAAATTGCCCAAAGTGAAGGCCATCGT----------------------CCTGTTA----CGGACTCCCCAAGCCC--------------GAGGTGGGTAGGT--------ATCTTTTTAGGCAACTGGGCAGGGCTGATTTGAGAGTAGGTGAGCCTGGAGACAGGTCAGAGCAGCAAGCCCCAGGGCTGGGCACCCCCAGCACCACACAGTTGGGAAAAGATGGG-AGGGGCCTTCTGGGAGTCCCATCTGCAACCCCCACTCCCATCCCCTCCCCGAAGCACCAGGGAGG----GG--TGAGAGTATGGCCCATGTCTTCCGCCTTGCAGAACGTGTGCCACACTCTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGATGGAACCAGGTGTGGGGAGAGCAAGGTA-GGGG-TG-CCGCAGCCTCTGCTGTG---GAGGCAGGTGGGTGGGGAGAGGTTGAG-CTCCCGTTGTGCCCATGCT
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112811653 3213 - 170124641 I
e panTro4.chr15                   79981750 1310 +  99548318 M

a score=210959.000000
s hg38.chr15_KI270850v1_alt          27291 115 +    430880 CTGGAGTCAGCCCCGGCTCACAG-------------------AGAGCCCCA--------TGCCCTCTGCAGCCCAAGCCCCCGTCTGCAAAGTGGAGGCATTGGGGCCAGGGCTTGATTCCATGATTCTCCAGGGTGTCTTC
s ponAbe2.chr15                   79933795 133 +  99152023 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTGGTGCTCCTAGTAGAGCCCTG--------CACTCTCTGCAGCCAAAGCCCCTGTCTGCAAAGTGGAGGCATTGGGGCCAGGGCTTGATTCCATGATTC-CCAGGGTGTCTTC
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      1268 134 -     28805 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTTGTAGTAGAGCCCCG--------CACTCTCTGCAGCCCAAGCCCCCGCCTGCAAAGTGGAGGCACTGGGGCCAGGACTTGATTCCGTGATTCCCCAGGGTGTCTTC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61591358 134 + 171882078 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTTCTAGCAGAGCCCCG--------CACTCTCTGCCTCCCAAGGCCCCATCTGCAAAGCAGAGGCACTGGGGCCAGGGCTTGATTCCATGATTCCCCAGGGTGTCTTC
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108915528 134 - 162156779 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTCCTAGCAGAGCCCCG--------TACTCTCTGCCCCCCAAGGCCCCATCTGCAAAGCGGAGGCACTGGGGCCAGGGCTTGATTCCATGATTCCCCAGGGTGTCTTC
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1319448 134 +  24206276 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTTCTAGCAGAGCCCCG--------CACTCTCTGCCTCCCAAGGCCCCATCTGCAAAGCAGAGGCACTGGGGTCAGGGCTTGATTCCATGATTCCCCAGGGTGTCTTC
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113740515 130 - 132174527 CGGGGGTCAGCCCCAGCTCACAGTCTTGCT-GTGCTCCTAGCAGACCCCC----------ACTCTCTGCAGCCCAAACCTCCATCTACAAAGTGGAAGCATTGGGGATAGGGCTTGATTCCATGATTC-CCTGGGTGTCTTC
i calJac3.chr10                  C 0 C 0
s canFam3.chr3                    58209230 121 +  91889043 CTGGAGGCCGCCTGGGTT--CAGACCAGCTTAAGCTCCTAGCAGAGCCCCAGCCTCCCCTACTCTCTCTAGCCCTC-CCCGTGTCTGCAGAGAGGAGGTGGTGCAGC--------GGCCCCA-------CCAGAAAGTC---
i canFam3.chr3                   C 0 C 0
e mm10.chr9                       90186619 103 + 124595110 I
e rheMac3.chr7                   112811653 3213 - 170124641 I
e panTro4.chr15                   79981750 1310 +  99548318 M

a score=336833.000000
s hg38.chr15_KI270850v1_alt          27406 163 +    430880 AGCTGAGTCAGCACGTGGGCT-GTTTTACTCCCT------GCTCAGCGCCTCCATGTGGCCTGGGTCACAGATGATTGTGATGATTGCGAGGGGGCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTTGCAGCATTCTCACACACCTTGTTCTCACTAGGGTGAGG
s ponAbe2.chr15                   79933928 163 +  99152023 AGCTGAGTCAGCACGTGGGCT-GTTTTACTCCCC------GCTCAGCTCCTCCATGTGGCCTGGGTCACAGGTGATTGTGATGATTGCGAGGGGGCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGTAGCCTTCCCACCCACCTTGTTCTCACTAGGGTGAGG
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      1402 163 -     28805 AGCTGAGTCAGCACGTGGGCT-GTTTTACTCCCC------GCTCAGCTCCTCCCTGTGGCCTGGGTCACAGATGATTGTGATGATTGCGAGGGGGCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGCAGCCTTCCCACCCACCTTGTTCTCACTAGGGTGAGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61591492 163 + 171882078 AGCTGAGTCAGCACGTGGGCT-CTTTTACTCCCT------GCTCAGCTCCTCCCTGTGGCCTGGGTCACAGATGATTGTGATGATTGTGAGGGGGTCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCTCAGCCTTCCCACCCACCTTGTTCTCACTAGGGTGAGG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108915662 163 - 162156779 AGCTGAGTCAGCACGTGGGCT-GTTTTACTCCCT------GCTCAGCTCCTCCCTGTGGCCTGAGTCACAGATGATTGTGATGATTGTGAGGGGGTCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGCGGCCTTCCCACCCACCTTGTTCTCACTAGGGTGAGG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1319582 163 +  24206276 AGCTGAGTCAGCACATGGGCT-GTTTTACTCCCT------GCTCAGCTCCTCCCTGTGGCCTGGGTCACAGATGATTGTGATGATTGTGAGGGGGTCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGCAGCCTTCCCACCCACCTTGTTCTCACTAGGGTGAGG
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113740645 162 - 132174527 AGCTGAGTCGGCACGTGGGCT-GTTTTACTCCCT------GCTCAGCTCCGCCCTGCGGCCTGGGCCACATGTTATGGTGATGATTGTGA-GGGGCCTCTCT--TACCTTCCATCCTTCCCCTCTGTGCCTTTCGCGGCCTTCCCACCCACCTTGTTCTCACTAGGGTGAGG
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90186722 154 + 124595110 GGCCCAGTCAACATGGGTTTT-ATTTTATTCTTTATGGTCACCCAGCTTCACCATGGCGTCTGTGTTGTGGGTGACCATAA------------AGTCTCTCTTACACCTTCCATCCTCCTC-----TGTCTTTTGACACTGTCTTACCTACTTTGATCTCAATGGGGTGAGG
i mm10.chr9                      I 103 C 0
s canFam3.chr3                    58209351  98 +  91889043 --------------ACGGGCTCCCTTTATTCCCT------GCTCTGCTCCACCGTGGGGCCTGAGTCTTGGACGACTGAGA---------GGGGGCCTC-CT--GACT------------------------------------------CCTCAGTCCCACTGGGGCAAGG
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112811653 3213 - 170124641 I
e panTro4.chr15                   79981750 1310 +  99548318 M

a score=1677936.000000
s hg38.chr15_KI270850v1_alt          27569 568 +    430880 ATGACT-GATAGGCTTGGG--GGTGGGGTGGCTCTACCTCCGTCTGTCTCGGTAGTGGTGTCTCAATGGGGAGTGCATACCTGTGGGCTTCCAGCCCGAGGCCATGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCATCTGCTCACGGAGCTGTGGCGTGGGCATACAGAGAGCCAAGCAGCAGTGCATGCAGCCTATGTGAGTGTGGGGCCCAGGGTGCCCTGGGC-AATGGGACAGAGGGACCCAG-GC--AGTCAGCCGATTGCAG-GAGCTTGGCTCTGTGCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCTGAG--TGTCCA-GGCCACCTTGAGTCACTTTCAAGGAGTGTTCTGAGGGCTGACAGGGTCCCCACTGCTGAcccctttgcagaaa--------------------gggggacactgaggcccagagactggagagactcagcagaggccacgtggcaaa-gcagctgctggctggaaggaggcaggagagggcagtggggaagagcatgggccctggaccttagatggctcagggttcgaatcccc-----------------------tcttcaccccttctctgggcctcc
s panTro4.chr15                   79983060 567 +  99548318 ATGAAT-GATTGGCTTGGG--GGTGGGGTGGCTCTTCCTCCGTCTGTCTCGGTAGTGGTTTCTCAATGGGGAGTGCATAC-TGTGGGCTTCCAGCCCGAGGCCATGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCATCTGCTCACGGAGCTGTGGCGTGGGCATACAGAGAGCCAAGCAGCAGTGCCTGCAGCCTATGTGAGTGTGGGGCCCAGGGTGCCCTGGGC-AATGGGACAGAGGGACCCAG-GC--AGTCAGCCAATTGCAG-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCTGAG--TGTCCA-GGCCACCTTGAGTCACTTTCAAGGAGTGTTCTGAGGGCTGACAGGGTCCCCACTGCTGACCCCGTTGCAGAGA--------------------GGGGGACACTGAGGCCCAGAGATTGGAGAGACTCAGCAGAGGCCACGTGGCAAA-GCAGCTGCTGGCTGGaaggaggcaggagagggcagtggggaagagcatgggccctggaccttagatggctcagggttcgaatcccc-----------------------tcttcaccccttctctgggccacc
i panTro4.chr15                  M 1310 C 0
s ponAbe2.chr15                   79934091 568 +  99152023 ATGACT-GATTGGCTTGGG--GGTGGGGTGGCTCTACCTCCGTCTGTCTGGGTAGTGCTGTCTCAGTGGGGAGTGCACACCTGTGGGCTTCCAGCTCGAGGCTGTGGATGGTGGCTGGTCCAGCTGGAGCGCCTGGTCCATCTGCTCGTGGAGCTGTGGCGTGGGCATACAGAGAGCCGAGCGGCAGTGCATGCAACCTATGTGAGTGTGGGGCCCAGGGTACCCTGGGC-AATGGGACAGAGGGACCCCA-GC--AGTCAGCCGATTGCAG-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCCGAG--TGTCCA-GGCCACCTTGAGTCACTTTCGAGGAGTGTTCTGAGGGCTAACAGGGTCCCCACTGCTGAcccctttgcagaga--------------------gggggacactgaagtccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggctggaaagaggcaggagagagcagtggagaagagcatgggccgtggaccttagatggctcagggttcgaatcccc-----------------------tcttcaccccttctctgggcctcc
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      1565 591 -     28805 ATGACTGGATAGGCTTGGGGTGGGGGGTTGGCTCTACCTCCATCTGTCTCGGTAGTGGTGTCTCAATGGGGAGTGTGTACCTGTGGGCTTCCGGCCCGAGGCCGTGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCGTCTGCTCGCGGAGCTGTGGCGTGGGCGTACAGAGTGCTGAGCGGCAGTGCATGTGGCCTACGTGAGTGTGGGGCCCAGGGTGCCATGGGT-AATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATTGCAG-GAGCTTGGCTCTATCCCAGCCCCTGGCTCTTAGAAGTGTCCTGATAATGGTCAGTCCGAG--TGTCCA-GGCCACCCTGAGTCACTTTCAAGGAGTGTTCTGGGGGCTGACAGGGTCTCCACTGCTGACCCCTTTGCAGAAACTGCTGACCCCTTTGCAGAGAGGGGACACTGAGGTCCAGAGACTGGAGAGACGCATCAGAGGCCACATGGCAAA-GCAGCTGCTGGCTGGAAGGAGGcaggagagggcagtggtgaagagcatgggccctggaccttagatggctcagggttcgaatcccc-----------------------tcttcaccccttctctgggcctcc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61591655 562 + 171882078 ATGACT-GATAAGCTGGGG--GCTGGGGTGGCTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCTGTGGGCTTCCGGCCCGAGGCGGTGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCCCGGAGCTGTGGCCTGGGCATACAGAGCGCCGAGCAGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCCTGGGC-AATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATTGCAG-GAGCTTGGCTCTGTCCCAGCCTCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCCGAG--TGTCCA-GGCCACCTTGAGTCACTTTCAAGCAGTGTTCTGGGGGCTGACAGGGTCCCCACTGCTGAcccctttccagaga--------------------gggggacactgaggtccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggctggaaGGAGGCAGGAGAGGGCAGTGGGGAAGA------GCCCTGCACCTTAGATGGCTCTGAGTTCGAATCCCC-----------------------Tcttcaccccttctctgggcctct
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108915825 568 - 162156779 ATGACT-GATaggctgggg--ggtggggtggcTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCTGTGGGCTTCCGGCCCGAGGCTGTGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCGCGGAGCTGTGGTGTGGGCGTACAGAGCGCTGAGCGGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCCTGGGC-AATGGGACAGAGGGACCCAA-GC--AGTCAGCTGATTGCAG-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCCGAG--TGTCCA-GGCCACCTTGAGTCACTTTCAAGCAGTGTTCTGGGGGCTGACAGGGTCCCCACTGCTGACCCCTTTCCAGAGA--------------------GcgggacactgaggcccagagactgGAGAGACTCATCAGAGGCCACATGGCAAA-GCAGCTGCTGGttggaaggaggcaggagagggcagTGGCGAAGAGCATGGGCCCTGGACCTTAGATGGCTCTGAGTTCGAATCCTC-----------------------TGTTCaccccttctctgggcctcc
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1319745 562 +  24206276 ATGACT-GATAGGCTGGGG--GGTGGGGTGGCTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCCGTGGGCTTCCGGCCCGAGGCGGTGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCCCGGAGCTGTGGCCTGGGCATACAGAACGCCGAGCAGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCCTGGGC-AATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATTGCAG-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCCGAG--TGTCCA-GGCCACCTTGAGTCACTTTCAAGCAGTGTTCTGGGGACTGACAGGGTCCCCACTGCTGAcccctttccagaga--------------------gggggacactgaggcccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggctggaaGGAGGCAGGAGAGGGCAGTGGGGAAGA------GCCCTGCACCTTAGATGGCTCTGAGTTCGAATTCCC-----------------------Tcttcaccccttctctgggcctct
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113740807 566 - 132174527 GTGACT-GATAGGGCTGGG--GGTGGGGTGGCTTTACCTCCATCTGTCTTGGTAGTGGTGTCTCAATGGGGAGTGCGTGCCCGTGGGCTTCCAGCCCGAGGCTGTGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCATCTGCTCGCGGAGCTGTGGTGTGGGCGTGCAGAGCGCTGAGCGGCAGTGCACGCAACCTGCGTGAGTGTGGGGCCCAGGGTGCCCTGGGC-GATGGGACAGAGGGACCCAA-GC--AGTCAGCCAATGTCAG-GAGCTTGGCTCTATCCGAGCCCCTGGCTCTTAGAAGTGTCCTCATAACGGTCAGTCCGAG--TGTTCA-GACCACCTTGAGTCACTTTCAAGGAGTGTACTG-GGGCTGACA-GGTCCCCACTGCTGAcccctttgcagaga--------------------gggggacactgaggcccagagactagagagacttatcacaggccacagagtaaa-gcagccgccggctggagggaggaaggagagggcagtggggaagagcgtgggccctggaccttagatggctcagggtttgaatcccc-----------------------tcttcaccccttctctgggcctcc
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90186876 548 + 124595110 ATGATT-GACAGGTGTCGG--G-------GGTCTGCCCCCCATATGTCTCAGTAGTGGTGTCTCAAAGGAGAGTGCGTCCCTGAGGGCTTCCAGCCCGAGGCGGTGGACGGTGGCTGGTCCGGTTGGAGTGCCTGGTCTGACTGCTCGAGGAGCTGTGGCGTGGGTGTACGGAGTTCTGAACGACAGTGCACGCAGCCTGTGTGAGTGTGGGGCCCAGG-------------CTGGGAGAGAGGATCCGAATGG--AGCCAGCTGAGAGCA--GAGACTGCCTCTGTTTCAGCCTCCATCTCTCAGAAGTGTCCTTGGAATGGTCAAGTCCAG--TGTCTA-AGCCACCACGGGCCACTCCCAGGGAGTGTTCTGGAAGC------GTTGCTCAGAGCTGACACGATAGCCAAGA--------------------GGGGAGTGCT--CTCCAAGAGCCGGGGGAGATGCA-CAGAGACCTTGCTGCAAAGGCAG----TGGCTGCAGGG----AGGAGGATGCAAAGGTGAATG--------CTTAGAACCAGGGAGGCTTAGGGTCTAGGTCCTCTGTCCCCACACAAGTGCCTTCCTTCTCCATGGCTCCTCTGGGCCTCA
i mm10.chr9                      C 0 I 1
s canFam3.chr3                    58209449 526 +  91889043 ATGACT------------G--GGTGGTATTTCCCTACCCCCATCTGTCT---TAGTGGTGTCTGAATGGGGAGTGCGTTCCTGTGGGCTTCCGGCCTGAGGCTGTGGATGGTGGCTGGTCTGGCTGGAGCCCCTGGTCCATCTGCTCGCGGAGCTGTGGCGTGGGTGTGCAGAGTGCTGAGCGGCAGTGCACACAGCCTGTGTGAGTGCGGGTCTGGGCGCAGCAGGGATGGGTGGGCCTGGGTGCCCTGA-GCAGAGTCAGCCTACCATGGAGAGCCTGGCTCTGTGCCAGCCTCCTGGGCTCCAAAGCGTCCCCATAGAAGCCATGCCCAGCATATCCAGGGCCACCCTG-GTCACT-CAGAGGGGCACCCCAGAGGCCAGCAGAGTCCCCAGTGTTGACCGTGCTGCAGACA----------------------GGAACACCAAGGCTCA-------------------------------GCATT-GCAGTAACTGGCTGGAGGGAGGcaggagaggccaggggtgatgagcttagactctggaccttagacggatcagggttcagatcctc-----------------------tctgcacttCTCCTTTGGGTCTCT
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112811653 3213 - 170124641 I

a score=445643.000000
s hg38.chr15_KI270850v1_alt          28137 236 +    430880 gtttccccacctgtataatagcagtgcccatccagtaaagttgtagtcaggggcaaatgcagtttatgcaggccagcccctcagc------------------cctgcagctcat-ctgtagtgggcactcagc-aGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAGGGCCTGAGATGAGAT--GGAGCAGCTGGGAGGATGGGACAGCACTGAAGGGgtgg-------cctgaggt--gagtgacttcacctctctggatctct
s panTro4.chr15                   79983627 234 +  99548318 atttccccacctgtataatagcagtgcccatccagtaaagttgtagtcaggggcaaatgcagtttatgcaggccagcccctcagc------------------cctgcagctcat-ctgtagtgggcactcaGC-AGGAG--GGGCTTGGTGGCCTCAGAGGCACAATAAGGGTCTGAGATGAGAT--GGAGCAGCTGGGAGGATGGGACAGCACTGAAAGGgtgg-------cctgaggt--g--tgacttcacctctctggatctct
i panTro4.chr15                  C 0 C 0
s ponAbe2.chr15                   79934659 236 +  99152023 atttccccgtctgtgtaatagcagtgcccatccagtaaggttgtagtcaggggcaaatgcagtttatgcaggccaggccctcagc------------------cctgcagctcat-ctgtagtgggcactcaGC-AGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAGGGTCTGAGATGAGAC--GGGGCAGCTGGGAGGATGGGACAGCACTGAAGGGgtgg-------cctgaggt--gagtgacttcacctttctgggcctct
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2156 236 -     28805 gtttccccatctgtataatagcagtgcccatccagtaaagctgtagtcaggggcaaatgcagtttacgcagaccaggccctcagc------------------cctgcagctcat-ctgtagtgggcactcaGC-AGGAG--TGGCTTGGTGGCCTCAGAGGCACAACAAGGGTCTGAGATGAGAC--GGAGCAGCTGGGAGGATGGGACAGCACTGAAGGGgtgg-------cctgaggt--gagtgacttcacctttctgggcctct
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61592217 238 + 171882078 gtttccccatctatataacagcagtgcccatccagtaaagttgtagtcaagggcaaatgcagtttttgcaggccaggccctcagT------------------CTTGCAGCTCGT-CTGTAGGGGGCACTCAGC-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAAGGTCTGAGATGAGACCGGGGGCAGCTGGGAGGATGGGCCAGCACTGAAGggatgg-------cctgaggt--gagtgatttcacctctctgggcctct
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108916393 236 - 162156779 gtTTCCCCGTCTATGTAATAGCAGTGCCCATCCAGTAAAGTTGTAGTCGGGGGCAAATGCAGTTTACGCAGGCCAGGCCCTCAGT------------------TTTGCAGCTCGT-CTGTAGTGGGCACTCAGT-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAAGTTCTGAGATGAGAC--AGGGCAGCTTGGAGGAGGTGACAGCATTCAAGGGGTGG-------CCTGAGGT--gagtgacttcacctctctgggcctct
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1320307 236 +  24206276 gtttccccatctatataacagcagtgcccatccagtaaagttgtagtcaagggcaaatgcagtttttgcaggccaggccctcagT------------------CTTGCAGCTCGT-CTGTAGGGGGCACTCAGC-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAAGGTCTGAGATGAGGC--AGGGCAGCTTGGAGGAGGTGACAGCATTCAAGgggtgg-------cctgaggt--gagtgacttcacctctctgggcctct
i chlSab2.chr29                  C 0 C 0
s mm10.chr9                       90187425 191 + 124595110 TTTGGTGCTAATAGGTACTAGCAGAGCCTTCCTAGTCAAGTTGTCATT--GGGTAAAGTCAGGTAATATGGGGAAGGCACGGAAC------------------CTT---CCTTGTGCTGCGGGAAACGCCCAGC-ACAAGCTGAGATTG----------------------TATCTGAGATTGGCT-----GCAGCTGAGAGAATGGGGCAGTACTGGTGGGGTGG-------CTGTAGCTTCGGGTGA--------------------
i mm10.chr9                      I 1 C 0
s canFam3.chr3                    58209975 222 +  91889043 ---------------------------ATTTCCAGGGAAACTGGACTCTGGGGTGACCGCAG------------GGCCCCCCAGCAGAGCTAAAACATGAAAACCTGCAACTAGT-AGGTAGAAAGCACTTAGTAAGGAC--TCACTTATTGGCCTCGGACGCAC-ATATGGGTCTGAGATGAGAG--GGGATGGCTGGGAGAGCTGGTTGGCTTGGAAGGCGTgttgtgtaccctggggc--aagtggcttcacctctctgggcctca
i canFam3.chr3                   C 0 C 0
e calJac3.chr10                  113741373   0 - 132174527 C
e rheMac3.chr7                   112811653 3213 - 170124641 I

a score=1279337.000000
s hg38.chr15_KI270850v1_alt          28373 548 +    430880 gtttccccatctaaatggggggg-cgcagggggtgtgaagatctggtgagaAGCAGAGGCCAGTGGTACTGTAGACC-GA---GGCACTACCCGGCTGA--TC--------TTCACTTCAGGAGGCCACCCGGGGCAGGCATGGGGTTCACAGTCGGCCCCACCCAGGGCCCTGCGCTTACCCAAGACTGGCCTGTGCCCCT----CCCTGCC--TCCTGGCCTCCAGGTCTGAGCTGAGTGGAGGCCAGCGACCCTGGCCTAAATGTGGA-GGATTTCAGGAGCTGTGCTCCATCATACCTTTCAGCTGGCTGGGGCCCTGGGCGC-TTCCTTTAGACCCAGGCTGGGGGTACTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGGTGTCATGGGCTGGAGACTCGGATTAGTCCCTCCAGCCAGTGCCAGTcatgcctgcagcttgtcccagcttctcaacagccctctgcaggggcagccccaaccccactttatacatgaggaaactgaggcccagagggtggccgaagacttgtccacgatcacacagcag
s panTro4.chr15                   79983861 548 +  99548318 gtt-ccccatctaaatgggggggtcgcagggggtgtgaagatctggtgagaAGCAGAGGCCAGTGGTACTGTAGACT-GA---GGCACTACCCGGCTGA--TC--------TTCACTTCAGGAGGCCACCCGGGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGTGCTTACCCAAGACTGGCCTGTGCCCCT----CCCTGCC--TCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGCCAGCGACCCTGGCCTAAATGTGGA-GGATTTCAGGAGCTGTGCTCCGTCAGACCTTTCAGCTGGCTGGGGCTCTGGGCGC-TTCCTTTAGACCCAGGCTGGGGGTACTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGGTGTCATGGGCTGGAGACTCGGGGTAGTCCCTCCAGCCAGTGCCAGTCATGCCTGCAGCTTGTCCCAGcttctcaacagccctctgcaggggcagccccaaccccactttatacatgaggaaactgaggcccagagggtggccgaagacttgtccacgatcacacagcag
i panTro4.chr15                  C 0 C 0
s ponAbe2.chr15                   79934895 548 +  99152023 gtttccccatctaaatggggggg-tGCAGGGGGTGTGAAGATCTGGTGAGATGCAAAGGCCAGTGGTACCATAGACC-AA---GGCACTATGTGGCTGA--TC--------TTCACTTCAGGAGGCCAACCGGGGCAGGCATGGGGTTCACAGTCAGCCCCACCCAGGGCCTTGCACTTACCCAAGACTGGCCTGTGCCCCT----CCCTGCC--TCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGCCAGCCACCCTGGCCTAGATGCGGA-GGATTTTAGGAGCTGTGCTCTGTCAGACCTCTCAGCTGGCTGGGGCCCTGGGGGC-TTCCTTTAGACCCAGGCTGAGGGTGCTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGGTGTCATGGGCTGGAGACTCGGAGCAGTCCCTCCAGCCAGTGCCAGTCATGCCTGCAGCATGTCCCAGcttctcaacagccctctgcagaggcagccccaaccccactttatacatgaggaaactgaggcccagagggtggccgaagacttgcccacggtcacacagcag
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2392 539 -     28805 gtttccccatctaaacggggagg----------tGTGAAGATCTGGTGAGACGCACAGGCCAGTGGTACTGTAGACT-GA---GGCACTACCTGGCTGA--TC--------TTCATTTCTGGAGGCCACCTGGGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGCACTTACCCAAGACTGGCCTGTGCCCCT----CCCTGCC--TCCTGGCCTTCAGGTCTGAGCTGGGTGGGGGCCAGCGACCCTGGCCTAGATGCGGA-GGATTTCAGGAGCTGTGCTCAGTCAGACCTTTCAGCTGGCTGGGGCCCTGGGCGC-TTCCTTTAGACCTGGGCTGGGGGTACTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTTGTTAGGATGCTGGTGTCATGGGCTGGAGACTCGGAGCAGTCCCTCCAGCCAGTGCCAGTcatgcctgcagcttgtcccagcttctcaacagccctctgcagaggcagccccaaccccactttatacatgaggaaactgaggcccagaggatggccgaagacttgcccacggtcacacagcag
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61592455 539 + 171882078 gtttccccatctaagcggggTGG----------TGTGAAGATCTGCTGAGACGCAGAGGTCAGTGGTACCGTAGACCTGA---GGCACTATCTGGCTAA--TC--------TTCACTTCAGGAGGCCACCCGTGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGTCCCTGTGCTTATCCAAGACTGGCCTGTGGCCCT----CCCTGCC--TCCTGACCTCCAGGTCTGAGCTGGGTGGGGGCCAGTGACCCTGGCCTAGATGCAGA-GGGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCAGCTGGCTGAGGCCCTGGAAGC-TTCCTTTAGATCCGGGCTG-GGGTACTGCCACCAGGAGGGAGGCCGAGGACGCAAGGGCTCGTTAGGATGCTGGTGTCATGGGCTAGAGACTTGGAGCAGTCCCTCCAGTCAGTGCCAGTCATGCCTGAAGCTTGTCCCAGCTtctcaacagccctctgcagaggcagccccaaccccactttatacaggaggaaaccgaggcccagagggtggccgaagacttgcccacagtcacacagcag
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108916629 538 - 162156779 gtttccccgTCTAAACAGTGGGG----------TGTGAAGATCTGCTGAGACACAGAGGCCAGTCGTACTGTAGACCTGA---GGCACTACCCGGCTAA--TC--------TTCACTTCCGGAGGCCACCTGGGGCAGGCATGGGGTTCACAGTCAGCCCCACCCAGGGCCCTGTGCTTACCCAAGATTGGCCTGTggccct-----cctgcc--tcctggcctcCAGGTCTGAGCTGGGTGGGGGCCAGCGACCCTGGCCTAGATGCAGA-GGGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCAGCTGGCTGGGGCCCTGGGCGC-TTCCTTTAGGCCCGGGCTG-GGGTACTGCcaccaggagggaggctgaggactCAAGGGCTCGTTAGGATGCTGGTGTCATGGGTCGGAGACTTGGAGCAGTCCCTCCAGCCAGTGCCAGTCATGCCTACAGCTTGTCCCAGCTTCTCAACAGCCCTCTGCAGAGGCAGCCCCAACCTCACTTTATactggaggaaactgaggcccagagggtggCTCAAGACTTGCCCCCGATCACACAGCAG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1320543 538 +  24206276 gtttccccatctaagcggggTGG----------TGTGAAGATCTGCTGAGACGCAGAGGTCAGTGGTACCGTAGACCTGA---GGCACTACCTGGCTAA--TC--------TTCACTTCCAGAGGCCACCTGGGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGTGCTTATCCAAGACTGGCCTGTGGCCCT-----CCTGCC--TCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGCCAGTGACCCTGGCCTAGATGCAGA-GGGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCAGCTGGCTGAGGCCCTGGGAGC-TTTCTTTAGATCCGGGCTG-GGGTACTGCCACCAGGAGGGAGGCCGAGGACGCAAGGGCTCGTTAGGATGCTGGTGTCATGGGCTAGAGACTTGGAGCAGTCCCTCCAGTCAGTGCCAGTCATGCCTGAAGCTTGTCCCAGCTtctcaacagcgctctgcagaggcagccccaaccccactttatacaggaggaaaccgaggcccagagggtggccgaagacttgcccacagtcacatagcag
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113741373 524 - 132174527 gtttccccatttaaacggtgggg---------atgTGAGGATCTGGTAAGACGCAGAGCCAAGCAGTACCATAGACT-GT---GGCACTGCCCAGCTGA--TT--------CCC--------AGGCCACCCAGGGAAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGTGCTTGGCTAAGACTGGCCTGTGCCCCT----CCCTGCC--TCCTGATCTCCAGCTCTGAGCTGGGTTGGGTCCAGCTACCCTGGGCTAGATGGGGA-GGGTTTCAGGAGCTGTGACTGGGCAGACCTCTCAGCTGGCTGGGGCCCTGGGGGCTTTTTTTTACACCCGGGCTCGGGGAACTGCCACCAGGAGGGAGACTGAGGACTCAAGGGCTCGTTAGGATGCTGGTGTCATGGGTTGGGGACTCTGAGCAGTCCCTCCAGTCAGTGCCAGTCATGCCTGCAGCTTGTCGCAGCTTCTCAACAGCCCTCTTCAGAGTCAGCCccaaccccattttacaga---------tgaggcccagggagtggccagagacttgcccacagtcacacagcag
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90187616 447 + 124595110 GCCTTCTCATCTAAA-GGGGGCT----------TTAGGAGACTTAATGAAACA-AGGGGC------------AGACT-GGCTTGGCCCCACTGGGCAAACTTC--------TTTGCTT-----GGCTGCCAGGG--AGG--TGGAATTCACAGCCAGTTCCATCTGAGGGATGGTACTTCACCA-----GGCCCATGGTCCCTATCCCCAGCATGTCCCTGCCTCCAGCTC--AGCCAATGTGGGGCTGG----CTTGGCTTGGATGGGGT-ACAGGTTAGATGCCAAGCCAAGGTAG----------TTTCTGGGGC-CTGGAGGC-TTCCTTT-GACCTGGCCCAGGTATGCTGCACCCAGGAACAACTCTAACAACCCAAGG---------------------------------------CTAGCCCATCA----------------GCCCACTACATGTTCTAGcctcttagtagccctct-tagaggca-ttccaactccattttagagagaaggagactgaggtccggaacatggcagtgcatttgctcatggtcacacagcag
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58210197 393 +  91889043 gtttccccaccttaaaaaggaTG---------ATCTGAAGATTCAG-GAGATGCTGAG-CCAGCAGTAGTACAGACC-GA---GGAGATACCTGGCTCC--TTGGGACGAGCCCTCTTCGCAAGGCTGCCCTGGCCA-GTGTGGGACTCAAAGCCAGCCCCACCCAGGGC------------------------------------CTGTGCC------------------TGGGCTGGGCTGGGGGCTGCCACCCTGGCCCAGATGAGGGTGGGGGTCAGCTGCTGTGCTT---------------------------CTGGGCAC-GCCTCTCAG--CCAGGCTAGGTG----------AGGAACAAGCCTGCAGACCTGTGGG------------------------------------------------------GCACCAGCCACATCCCTGGCTCATCACAGGGtcgtagcagccctctgaaggggaagccccatccctgtcttacaggccagcgaactggagctcagacag-gGATGAAG-----------GGCGCCCTGCAG
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112811653 3213 - 170124641 I

a score=795976.000000
s hg38.chr15_KI270850v1_alt          28921 510 +    430880 gttgggggcagagctcagg---cttcCTGCTGCCACCTCCCCACAGGTCCCTACAGACAGGGAGGGTGTGTCTGGGCCACAGGGTGGGCAACCCA----AGGGAGGGAAGCAGCGTGC--ACAAAGCTGG----GCAGCAGGGATCTTGGGGTGTGGGT-GCAGGAGGAAGCTGCTTGCTCTGGGCTGTGGCCATGCAGTAG-CACTCACTGGGCCCTCACTGGGGTCCACCCCGGTTCTCCCCACAGGCCCAGATACAAAGGCAGATACTGTGTGGGTAAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGCCGCCCCTCCTTCCGCCACGTCCAGTGCAGCCACTTTGACGCTATGCTCTACGAGGGCCAGCTGCACACATGGGTGCCCATGGTCAATGACGGTGAGTGCTGCCTCCCATGGAAACATTGAGACTCAGAGGGCGGCG-AGCGGGGTGTGGGTCCAAGGTTACCCTGTGATGCAAGCAGGAGACCCAGTCTCCACCCCAAG
s panTro4.chr15                   79984409 511 +  99548318 gttgggggcagagctcagg---cttcCTGCTGCCACCTCCCCACAGGTCCTTACAGACAGGGAGGGTGTGTCTGGGCCACAGGATGGGCAACCCA----AGGGAGGGGAGCAGCATGC--ACAAAGCTGG----GCAGCAGGGATCTTGGGGTGTGGGT-GCAGGAGGAAGCTGCTTGCTCTGGGCTGTGGCCATGCAGTAG-CACTCACTGGGCCCTCACTGGGGTCCACCCCGGTTCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTAAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGCCACCCCTCCTTCCGCCACGTCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCATGGTCAATGACGGTGAGTGCTGCCTCCCATGGAAACATTGAAACTCAGAGGGTGGCGAAGCGGGGTGTGGGTCCAAGGTTACCCTGTGATGCAAGCAGGAGACCCCGTCTTCACCCCAAG
i panTro4.chr15                  C 0 M 29513
s ponAbe2.chr15                   79935443 508 +  99152023 attgggggcagagctcagg---cttcCTGCTGCCACCTCCCCGAAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGGGTGGGCAGCCCA----AGGGAGGGGAGCAGCGTGC--ACAAAGCTGG----GCAGCAGGGATCTCGGGGTGTGGGT-GTAGGAGGAAGCTGCTTGCTCTGGGCTGTGGCCATGCAGTAGCCACTCACTGGGCCCTCACTGGGGCCCACCCCGGTTCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCAGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCAGCTGGCCGCCCCTCCTTCCGCCACGTCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCGTGGTCAATGACGGTGAGTGCTGCCTCCAGTGGAGACATTGAGGCTCAGAGGGCTGGG----GGTATGTGGGTCCAAGGTTACCCTGTGATGCAAGCAGGAGGCCCAGTCTCCACCCTAAG
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2931 506 -     28805 gttgggggcagagctcagg---cctcCTGCTGCCACCTCCCCGCAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGGGTGGGCAGCCCA----AGGGAGGGGAGCAGCGTGC--ACAAAGCTGG----GTGGCAGGGATCTCGGGGTGTGGGT-ACAGGAGGAAGCTGCTTGCTCTGGGCTGTGGCCATGCAGCAG-CACTCACTGGGCCCTCACTGGGGCCCACCCCGGTTCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGCCGCCCCTCCTTCCGCCACGTCCAGTGCAGTCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCGTGGTCAATGACGGTGAGTGCTGCCTCCCATGGAGACACTGAGGCTCAGAGGGCGGGG-----GGGTGTGGGTCCAAGGTTACCCTGTGATGCAAGCAGGAGGCCCAGTCTCCACCCTAAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108917167 507 - 162156779 GTTGGGGGCAGAGCTCAGG---CTTCCTGCTGCCACCTCCCCACAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGGGTGGGCAGCCCA----AGGAAGGAGAGCAGCGTGC--ACAAAGCTGG----GCGGCAGGGATCACGGGGTGTGGGT-GCAGGAGGAAGCCGCTCGCTCTGGGCTGTGGCCATGCAGTAG-TATTCACCAGTCCCTCACTAGGGCGCACCCTGGTCCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGCCGCCCCTCCTTCCGCCACATCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCGTGGTCAATGACGGTGAGTGCTGCCTCCCATggagacactgaggcccagagggctgGG----GGTGTGTAGGTCCAAGGTTACCCTGTGATGCAAGCAGGAGGCCCAGTCTCCACCACAAG
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113741897 491 - 132174527 gttggggagagagctcagg---ctTACTGCTGCCACTTCCCCTCAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGCGGGGGCAGCCCACTCTGGAGAGTAGAGCAGTGTGC--GCAGAGCTGG----GTGGCAGGGATCTTGGGGTGCGGGGAACAGGAGGAGGCCACTCGCTCTGGGCTGTGGCCATGCAATAG-CACTCACCAGGCCCT------------CCCTGCTTCTCCCCACAGACCCAAATACAAGGGCAAGTACTGTGTGGGCGAACGGACGCGTTTCCGCCTCTGCAACCTGCAAGCCTGCCCCGCTGGCCGCCCCTCCTTCCGCCACATCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCTGTGGTCAATGACGGTGAGTGCTGCCTCCCACGGGGACACT--------GAGGGCTGGG----GCTGTGTGCGCCCAAGGCTACCTTGCGATGCAA-CAGGAGGCCCAGTCTCCACCCCAAG
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90188063 451 + 124595110 -ctctgggctgagcctgagggtcttcttgctgccactcGTCTTTAGATCCTTGGAGACAGGGAGGGTGTATAT-------------GGCAGCCCC----CAAGGGCAAAGCAGCATGATGGGGAGGGTGGGGGCGGGGCAGGGGACTCTGGGTGCAGA--AGATGTAGATGTTGATTGGCATGGG--------AGCTAATAG-CATACTCATAGCC--------------CCATGGCTTTCCTTACAGGCCTAAGAACAGAGGCAAGTACTGTGTGGGGGAGAGGAAGCGGTCCCAGCTCTGCAACCTGCCAGCCTGCCCGCCGGACCGTCCCTCTTTCCGTCACACCCAGTGTAGCCAGTTTGATGGCATGCTGTACAAGGGCAAGCTCCATAAATGGGTGCCTGTGCCCAATGACGGTGAGTTATGCTACCCACACGGATGTTGAGGCCCAGAGG--TGAG----GATGTATGGACCGCA---------GTGACATAGG-----------------ACCCTCAG
i mm10.chr9                      C 0 I 1
s canFam3.chr3                    58210590 396 +  91889043 GGTGGGCGCAGAGCCCAGA----------------------------------------GGGTGGGTGGGCGT-----------TGGACTCCCCG---------------CAGTTAGA-----------G----GTTGCAGGAGCTGCCACAT---GGT-CCAAGGGCCTGCT------CCTGGACCGAGGT-ACACAGTAGGCACTCACTGTGTGCTCACTCAGCCCCACC-TGGCTCTCCTCACAGACCCAAATACAAGGGCAAGTACTGTGTGGGTGAACGGAAGCGCTTCCGCCTGTGCAACCTGCAGGCCTGCCCCCCCGGCCACCCCTCTTTCCGCCATGTGCAGTGCAGCCACTTTGACGCCATGCTCTACAAGGGCCAGCTGCACACGTGGGTGCCTGTGGTCAACGACGGTGAGTCCTGCCACCCATGGTGACACTGAACCGCAGGGG-----G----AGTCCGGGGGCCCGAGGT----------------------------TCCACACCCTGGC
i canFam3.chr3                   C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I

a score=235388.000000
s hg38.chr15_KI270850v1_alt          29431 192 +    430880 CCTGGGCCACTCCCACTGTCCC--CTGGGGCTGCTGCTCGCCCCTAGCTCCCCAATCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAGCATGTTTGTGCTGCTTGGGAGCC--TCCAGCCTGCCATGGATGTGTGTCACGGAGG-GGTCTTCCTGGTGGCCTCCA--T-ACT-CCCGCTCCAGCTGTTGC
s panTro4.chr15_GL392289_random      32109 192 -    187897 CCTGGGCCACTCCCACTGTCCC--CTGGGGCTGCTGCTCGCCCCTAGCTCCCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAGCATGTTTGTGCTGCTTGGGAGCC--TCCAGCCTGCCATGGATGTGTGTCACGGAGG-GGTCTTCCTGGTGGCCTCCA--T-ACT-CCTGCTCCAGCTGTTGC
i panTro4.chr15_GL392289_random  n 0 C 0
s ponAbe2.chr15                   79935951 192 +  99152023 CCTGGGCCGCTCCCACTGTCCC--CTGGGGCTGCTGCTCACCCCTAGCTCCCCAGTCTGCAGCCT---TGCAGATAGCTGCCAGCCCAGCCGGAGCCTCCAGCATGTTGGTGCTGCTTGGGAGCC--TCCAGCCTGCCATGGATGTGTGTCACGGAGG-GGTCTTCCTGGTGGCCGCCA--T-ACT-CCTGCCCCAGCTGTTGC
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3437 192 -     28805 CCTGGGCCGCTCCCACTGTCCC--CTGGGGCTGCTGCTCACCCCTAGCTCCCCAGTCCGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAGCATGTTGGTGCTGCTTGGGAGCC--TCCAGCCTGCTATGGATGTGTGTCATGGAGG-GGTCTTCCTGGTGGCCTCCA--T-ACT-CTTGCCCCAGCTGTTGC
i nomLeu3.chr6_GL398151_2_random C 0 I 10
s papAnu2.chr7                   108917674 192 - 162156779 CCTGGGCCTCTCCCAATGTCCC--CCGGGGCTGCTGCTCACCCCTAGCTCTCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAGCATGTTGGTGCTGCTTGGGAGCC--TCTAGCCTGCTATGGAAGTGTGTCACAGAGG-GGTCTTCCTGGTGGCCTTCA--C-ATT-CCTGCCCCAGCTGTTGC
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113742388 164 - 132174527 CCTGAGCCACG-CCGCTGTGCC--CTGGGGCTGCTGCTC-CCCCTAGCTCCCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCTGGAGCCTCC------------------------------AGCCTGCCATGGAAGTGTGTCATGGAAG-GGTCTTCCTGGTGGCCTCCAATA-ACT-CCTGTCTCGGCTATCGC
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90188515 115 + 124595110 CCTTGG----------TGTCCCTGCTGGGAGAGCTGCTCATCTCTAGCTCCTCAGTCTGCG---------------------------------------------------------------------TGTGTGTCATGGAGG------ACGCAGG-GGTCTTCCTGGTGGCCTCTG--T-AATGCCTGCTCTTGGTGTCGC
i mm10.chr9                      I 1 I 1
s canFam3.chr3                    58210986 155 +  91889043 ------------------------CCTGGGTCATCGCCC-CCACCAGCTCTCCAGGGTGCAGCCCAGGGGTGGGAGGGGTCCGGCCCA--------------------TGTGCTGCCCCGGAGCTGGGTCACATGGCCACGGATGTGTGCAACGGATGCTGTCTTACT-GTGACCTCCC--TGACT-CCTGCCTGGGTTGTCCC
i canFam3.chr3                   C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I

a score=461710.000000
s hg38.chr15_KI270850v1_alt          29623 453 +    430880 TGATGACTCTTCTACTTGGGCCCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCGCGAATGAGTACTTTGCCAAGAAGCTGCGGGACGCCGTGGTTGATGGCACCCCCTGCTACCAGGTCCGAGCCAGCCGGGACCTCTGCATCAATGGCATCTGTAAGGTGTGCCTGGTTAGGAAGAGGCTCTCCCAGCACTGC-CTGCCCCCAGCCCCACTGGCGGGCCCCAGGTTCT-----------CTCCTGGTCCTCCTCGGGCCACCCTCCCCATGCTCT-ACCATTGGGCTTCCCAGCCCCTACCCTCTATGACCTCTAAGGCAAAGCCCC--TACCACGC--CTCCTGGCACTGGGGACCCCCC------------CCAGTCAG--------GCCTCGC---------------------CCCACTGCGTCTCCTTGGATGCCTGCACCAGCACCGCCCCag----------ccaggaaaccggagcccaggcagtggcttgacctcttgctggctggct---
s panTro4.chr15_GL392289_random      32301 452 -    187897 TG-TGACTCTTCTACTTGGGCCCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCGCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCCGTGGTTGATGGCACCCCCTGCTACCAGGTCCGAGCCAGCCGGGACCTCTGCATCAACGGCATCTGTAAGGTGTGCCTGGTTAGGAAGAGGCTCTCCCAGCACTGC-CTGCCCCCAGCCCCACTGGCGGGCCCCAGGTTCT-----------CTCCTGGTCCTCCTCGGGCCACCCTCCCCATGCTCT-ACCATCGGGCTTCCCAGCCCCTGCCCTCTATGACCTCTAAGGCAAAGCCCC--TACCACGC--CTCCTGGCACTGGGGACCCCCC------------CCAGTCAG--------GCCTCGC---------------------CCCACTGCGTCTCCTTGGATGCCTGCACCAGCACCGCCCCAG----------CCAGGAAACCGGAGCCCAGGCAGTGGCTTGACCTCTTGCTGGCTGGCT---
i panTro4.chr15_GL392289_random  C 0 C 0
s ponAbe2.chr15                   79936143 460 +  99152023 TGATGGCTCTTCTACTTGGGCCCCCAGTGAACCCCTGCGAG-TTGCACTGCCGGCCCTCGAATGAATACTTTGCCGAGAAGCTGCGGGACGCTGTGGTTGATGGCACCCCCTGCTACCAGGTCCAGGCCAGCCGGGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCTGGTTAGGAAGAGGCTCTCCCAGCACTGC-CTGCCCCCAGCCCCACTGGCGGGCCCCAGGTTCTCTCCTGGGTCCCTCCTGGTCCTCCTCGGGCCACCCTCCCCATGCTCT-ACCATCGGGCTTCCCAGCCCCTACCCTCTATGACCTCTAAGGCAAAGCCCC--TACCATGC--CTCCTGGCACTGGGGA-CCCCC------------CTAGTCAG--------GCCTCGC---------------------CCCACTGCGTCTCCTTGGATGCCTGCACCAGCACCACCCCAG----------CCAGGAAACCGGAGCCCAGGCAGTGGCTTGACCTCTTGCTGGCTG------
i ponAbe2.chr15                  C 0 C 0
s papAnu2.chr7                   108917866 460 - 162156779 TGATGGCTCTTCTACTTGGGCCCCCAGTGAACCCCTGCGAG-CTGCACTGCCGGCCCTCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCCGTGGTCGATGGCACCCCCTGCTACCAGGTCCGGGCCAGCAGGGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCTGGTTA-GAAGAGGCTCTCCCAGCACCGg-ctgcccccagccccactggTGGGCCTCAGGCTCTCTCCTGGGTCCCTCCTGGTCCTCCTCAGGCCACCCTCCCTATGCTCT-ACCTTTGGGCTTCCCAGCCCCTACCCTCTATGACCTCTAAGGCAAAGCCCC--TACTATGC--CTCCTGGCACTGGGGACCCCTC------------CCAGTCAG--------GCCTCGC---------------------CCC-CTGCATCTCCTTGGATGCCTGCACCAGCACCGCCCCAG----------CCAGGAAACCAAAGCCCAGGCAGTGGCTTGACCTCTTGCTGGctgg-----
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113742552 455 - 132174527 TGATGGCTCTTCTACTT-GGCCCCCAGTGAACCCCTCTGTGACTGCACTGCCGGCCCTCGAATGAGTATTTTGCTGAGAAGCTGCGGGACACCGTGGTCGATGGCACCCCCTGCTACCAGGGCAGGGTCAGCCGGGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCTGGTCAGGAAGAGGCTCTCCCAG-ACTGCACCCCCCACAGCCCCACTGGCAGGCCCCAGGTTCTCCCCTGGGTCCCTCCTGGTCCTCT---GGCCACCCTCCCTATGCTCT-ACCATTGGG-TTTTCAGACCCCACCCTCTAT-ACCACTAAGGCAAAGCCCC--TACCAGGC--CTCCTGGCACTGGAGACCCCTC------------CCAGTCAG--------GGCTTGC---------------------CGCTCCTCGTCTCCTTGTATG-CTGTGCCAGCACTGCCCCAG----------CTGGGAAACCGGGGCTCAGGCAGGGACTTGACCTCTTGCCAGCTG------
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90188631 435 + 124595110 CCATGAGTCCTCCCCTTGCCCCATCAGACAACCCCTGTGAG-CTGCACTGCCGGCCTTCCAACTCCTCCAATACAGAGAAGCTGAGGGATGCTGTGGTGGATGGCACCCCTTGCTACCAAAGCCGCATCAGCCGTGACATCTGCCTCAACGGCATCTGTAAGGTATG-TGGGAGAGGAGGAGGTTCGCCTAGTCCTGC-----------------TGGCAGGCCCTGGGCCCACTGCCAGGGC-TTCCTGGCTTTCTCCAGGCT-------------------------GCATCTGAGCCCCTGCTGTC--TGACTTTTAAGACACAGCCTCTGTGCCCTGCTGTCTCTGGCAATGGAGAGCCCACAGTTAGCACCAACTTGTCAGTCACTATCACCTTACCCACTTTGTCTCCACCAGTTTCCTACTGCTTATCCCAGCATGCCT--ACCTATAAAGCTCCAG----------CCATGAAA-----GCCTAGGTGGAT--------------------------
i mm10.chr9                      I 1 C 0
s canFam3.chr3                    58211141 431 +  91889043 TAACGGCCCCTCCACTTGGGCCCCCAGCGAACCCCTGCGAG-CTGCACTGCCGGCCCTCCAATGAGTACTTTGCTGAGAAGCTTCGGGACGCTGTGATCGACGGCACCCCCTGCTACCAGGGCCAGCCTGGCCGTGACCTCTGCATCAACGGCATCTGCAAGGTGCGCCTGAGCAGAAAGAGGGGCTCCCA----TGT-----------------TGGCTACCCCTGGGTCC------------CTCCTAGATCCCCCCAGCCC--TCTCCCCAGGCTGTCAGCAAAGAGCCCACCCCTCCTGGCACTGGAGCTCCTTGCAGGTGAGCCTCA--CACCCCAG--CCTCT-GCACCGTGGGCCCTCC------CACC--CCTCCTGG--------CCCACAA---------------------CCCACTGCCCAAGCCT------CTGAACCTCAGCCGCCCCCGCACAGTGCCCCCAAGAAACCA--GCCCA-----CGGCTCAGCCTCCTACTGCTTC---CGT
i canFam3.chr3                   C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e nomLeu3.chr6_GL398151_2_random      3629  10 -     28805 I

a score=517657.000000
s hg38.chr15_KI270850v1_alt          30076 444 +    430880 gaccccaggcagtggcttgacctctTGCTGGCTGGCTGACCCCAGGCAGTGGTTTGCTCCCTGATAG-A-----------------------GGGGTTAAATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAAGAGTAGGCCTCAGTGTTTGGTAACAATTTATATTCTTATTTTTAATAACAACGATGGCCTCTCCTCTTTACCCATGTCTCCAGCCACCTACTTG-TCCTTGCTTCTTGCCCTCTAAACCACTGGGGTATCAAGGCCTGGGCTCCGAGGAGGACCAGGAGGGAGGTGCCAACCCCCAGTGCCTTTGACGTTGAAATTCCCTGC--------ACGCGCTGCTCAGGAGCCCGTGGCGTGTCAGATCCCCTGCCTGCCCGcaggctt---t-gcagaactcttcccttctcttgtctcttgtgatgctca-tgacatgcctttaagggaggggtgggtctccct
s panTro4.chr15_GL392289_random      32753 407 -    187897 GACCCCAGGCAGTGG-------------------------------------TTTGCTCCCTGATAG-A-----------------------GGGGTTAAATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAAGAGTAGCCCTCAGTGTTTGGTAACAATTTATATTCTTATTTTTAATAACAACGATGGCCTCTCCTCTTTGCCCATGTCTCCAGCCACCTACTTG-TCCTTGCTTCTTGCCCTCTAAACCACTGGGGTATCAAGGCCTGGGCTCCGAGGAGGACCAGGAGGGAGGTGCCAACCCCCAGTGCCTTTGACGTTGAAATTCCCTGC--------ACGCGCTGCTCAGGAGCCCGTGGCGTGTCAGATCCCCTGCCTGCCCGCAGGCtt---t-gcagaactcttcccttctcttgtctcttgtgatgctca-tgacatgcctttaagggaggggtgggtctccct
i panTro4.chr15_GL392289_random  C 0 C 0
s ponAbe2.chr15                   79936603 411 +  99152023 ----------------------------------GCTGACCCCAGGCAGTGGTTTGCTCCCTGATAGAA-----------------------GGGGTTAAATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAAGAGTAGCCCTCAGTGTTTGGTAACAATTTATATTCTTATTTTTAATAACAACTGTGGCCTCTCCTCTTTGCCCATGTCTCCAGCCACCTACTTG-TCCCTGCTTCTTGCCCTCTAAACCACTGGGGTATCAAGGCCTGGGCTCCGAGGAGGACCAGCAGGGAGGTGCCAACTTCCAGTGCCTTTGATGTTGAAATTCCCTGC--------ACGCGCTGGTCAGGAGCCCGTGGCATGTCAGATCCCCTGCCTGCCCacaggctt---t-gcagaactcttcccttctcttgtctcttgtgatgctca-cgacatgcctttaagggaggggtggatctcccc
i ponAbe2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3639 445 -     28805 GAGCCCAGGCAGTGGCTTGACCTCTTGCTGGCTGGCTGACCCCAGGCAGTGGTTTGCTCCCTGATAGAA-----------------------GGGGTTAAATGAGGTGGCACAGGTGACACGAAGGGCTCTGAGCCGCGAAGAGTAGCCCTCAGTGTTTGGTAACAATTTCTATTCTTATTTTTAATAACAACGATGGCCTTTCGTCTTTGCCCATGTCCCCAGCCACCTACTTG-TCCCTGCTTCTTGCCCTCTAAGCCTCTGGGGTATCAAGACCTGGGCTCTAAGGAGAACCAGCAGGGAGGTGCCAACCCCCAGTGCCTTTGACGTTGAAATTCCCTGC--------ACGTGCTGGTCAGGAGCCCGTGGCGTGTCAGATCCCCTGCCTGCCCCCGGGCtt---t-gcaggactcttcccttctcttgtctcttgtgatgctca-cgacatgcctttaagggaggggtgggtctcccc
i nomLeu3.chr6_GL398151_2_random I 10 C 0
s papAnu2.chr7                   108918326 410 - 162156779 -----------------------------------ctgaccccaggcagtGGTTTGCTCCCTGACAGAA-----------------------GGGGTTAAATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAAGAATAGTGCTTAGTATTTGGTAACAAaatctattcttatttttaataacaacgATGGCCTCTCCTCTTTGCCTATGTCCCCAGCCACCTACTTG-TCCCTGCTTCTTGCCCTCTAAGCCTCTGGGGTATCAAGGCCTGGGCTCTGAGGAGGACCAGCAGGGAGGTGCCAACCCCCAGAGCCTTTGACGTTGAAATTCCCTGC--------ATGCGCTGGTCAGGAGCCCGTGGCACGTCAGATCCCCTGCCTGCCCGTGGCCTT---T-GCAGAactctttccttctcttgtctcATGTGATGCTCA-CGACATACCTTTAAGCGAGGGGTGGGTCTCCCC
i papAnu2.chr7                   C 0 I 489
s calJac3.chr10                  113743007 407 - 132174527 ----------------------------------GCTGACCCCAGGCAGTGGTTTCCTCCCTGATAGAA-----------------------GGGGTTAAATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCAAAGAGTAGCACTCGGTATTTGGTAACAATTACTATTCTTATTTTCAAT-ACAAGGATGGCCTCTCATCTTTGCCCATCTCCCCAGCCACCTACCTGCCCCCTGCTTCTAGCCCCCTAAGCCGCTGGGGTGTCTGTGCCTGGGCTCAGAGGGGGACCGGCAGGGAGGGGCCAACCCCCAGCGCCTCTGATGTTCAGATTCCCTGC--------AAGCACTGGTCAGAAGCCCGTGGCGAGTCAGGT-CCCTGCCTGCCCGCAGCCTT---T-GCAGAACTC---CCTTCTCTTGTAGcatgtgatgctca-agacatgcctttaagggaggggtgggtttcccc
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90189066 366 + 124595110 -----------------------------------------GCAGGCAACTGCCTCCTCTCTCACTGGA-----------------------AGGGGTTGGCAGACTGGTCCTGGTGGTATGCTGGGCTCCGAGCC-TGCAGA-TAGCACT--GTGCTTCGTAATAGTTC---TTCCGATTTCTAGT------GCTTCCTGCTCTTCCATGCCCAGGGCCCCGGCCACCTTCCTT-ACCTTGCTTCTTGC-----------------TTTTAAAGCTTGGGTTTAAAGGAGGCTGAAGAAAGAGGGGCTAAC--CCAGTGTCTTTGATAGTGA-ATCCTATTT--------ATAGA------AAAATTCCACGGTGTGCCAGAGTCCACGTTTATCTGTAGTCTTATGT-GAGAGGCACGTCCTGCCTCCTGTCTCCTGGGATGTTCT-TAACA--CTCTTAAGGCATgaaatgatgtcccc
i mm10.chr9                      C 0 I 6
s canFam3.chr3                    58211572 374 +  91889043 GACCCCG--------------------------------------GCAGCCGTTTCCTCTGTCTTAGAAAGGCGGGGCCGGCTCCCGGTTGTAGGGCTCAGTGAGGTCATTGCAGGGTTACGCAGGGCTCAGGGTCTGGCAGAGGTTGTGTCAGTGTTTGTTAGCAACATGTACTCCTG--TCCAGCAACCTCAGAGGTCGCTCCTCCCTGCC-----------------------CCCTTGCCACTAGGACC-----CCCCAGGGGTGT-----------------AGACGGGCAGCAGGGAGGTGCTAGC--CCAG-GCCTTTGACATCCA---TCCCTGTTTCTAGGAAAGTCCTGTCTA----CCCTGGG-----CAGAGCCCCTGCCTG-CTGTGGCCTT---TCGTAAAACTTGCC----CTCCGGTGCCTTGTGCCACCTGTCAACCTGGCTGTGTGACACAGACCGGGCTCCCT
i canFam3.chr3                   C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I

a score=245342.000000
s hg38.chr15_KI270850v1_alt          30520 199 +    430880 gtctcacatctgaggaaactgaggctcagggaggtagagaagttcacctg-ggtca----ga-ggcacagctggggtggggcagggccagagagaggcctcccgacccccactcccagctttcttctcctgaccctggctggcccccGGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCAGGGGCCTCCCCT-CCTCGTGTGT
s panTro4.chr15_GL392289_random      33160 199 -    187897 gtctcacatctgaggaaactgaggctcagggaggtagagaagttcacctg-ggtca----ga-ggcacagctggggtggggcagggccagagagaggcctcccaacccccactcccagctttcttctcctgaccctgcctGGCTCCCGGTGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCAGGGGCCTCCCCT-CCTCGTGTGT
i panTro4.chr15_GL392289_random  C 0 C 0
s ponAbe2.chr15                   79937014 197 +  99152023 gtctcacatctgaggaaactgaggctcagggaggtagaaaagttcacctg-ggtca----ga-ggcacagctggggtggggcagggccagagagaggcctcctga-ccccactcccagctttcttctcCTAACCCTGGCTGGC-CCCGGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCAGGGGCCTCCCCT-CCTCGTGTGT
i ponAbe2.chr15                  C 0 I 10
s nomLeu3.chr6_GL398151_2_random      4084 242 -     28805 gtctcacatctgaggaaactgaggcttagggaggtagagaagttcacctg-ggtca----ga-ggcacagctggggtggggcagggccagagagaggcctcccgatcctcactcccagcttcctcCTCCTGACCCTGGCTGGCCTCCGGGGCTGTGGCCACAGCGGGCTGGCCTCCGGGGCTGTGGCCACAGAGAGGTGGCCACAGAGAGCTGGCCGCCAGCACCAGGGGCCTCCCCT-CCTCGTGTGT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108919225 199 - 162156779 ATCTCacatctgaggaaactgaggctcagggaggtagAGAAGTTCACCTG-GGTCA----GA-GGAAcagctggggtggggcagggccgGAGAGAGGCCTCCTGACCCCCACTCCCAGCTTTCTCCTCGTGAGCCTGGCTGACCCCCGGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCAGGAGCCTCCCCT-CCTTGTGTGT
i papAnu2.chr7                   I 489 C 0
s calJac3.chr10                  113743414 172 - 132174527 atctcacatctgaggacactgatgctcagggagatagagaagttcacctg-ggtca---------------------------------gagagAGGCCTCCTGACCCCGACTCCCAGATGTCTCCTCCTGACCCTGGCTGGCCCCCAGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCACGGCACTCCCCTCCCTTGTGTGT
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90189438 175 + 124595110 ccttctcatctagagaaactgaggatcagg--ggaaaaagagctta------gtcatcaggc-aggatgactgtgatgggactggacccaagcaaaggcttttgacctc--ctcctatggtctctctcctgagcc---CTGGC-----------------------------------------------------ACATACTCAGGGGGTTGGCAGCCAGCACAAAGGGCCTCCTCT-CTAT------
i mm10.chr9                      I 6 C 0
s canFam3.chr3                    58211946 163 +  91889043 GTCTCACAGCTGGGGGACC--GTGCTCAGGGAGGTGGAAGGGTTCACTTGAGGTCA----GAGGGCGCGGCTGGTGGCTGGCTGGAGCCCGGAG------CCCTGTCCTCCCTCC---------TCTCCCTGCTCTGGTGGATCCCTGAGGCT-------------------------------------------GGGGCT-----------GATGCTAG--------GTCTCCCTC-CTGTGTGT--
i canFam3.chr3                   C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I

a score=664696.000000
s hg38.chr15_KI270850v1_alt          30719 644 +    430880 TGCAGAACGTGGGGCTGTGACTTTGAGATTGACTCTGGCACTATGGAGGACCGCTGTGGCGTGTGCCACGGCAACGGCTCCACCTGCCACACCGTGAGTGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGGGTGGGACCACTGT-GGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----TCCCCATCT-CCCCCGGGCCCCTGTCCTTGGCC-TCGTGGCCCCCACCCAGCCTAGAGATGGCTAAGCAGGG-AGGGCTTGCTGGGGTGG-------ATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACACGCAGAGACCTGTCCCCATGGGGAGTCTTCCTGTCCCAGAGACCCCAGGCAGGGCCACCCCGACTTGTGTGTGGCCCCTGGGCCTTTCAAAGAATGGTCGTCTCCTCCTGAATCTTCTGAGACCCCCAGCTCCATGCCCTCACCTCT-G-GTCTGTTTTGCACATGTTGCTGAAGTACTGACTGTGTG--------CTAGGTGATGAGGACATGCAGGTgaagcgctcagtcctgaagggggacagaaccttctggtgtgatcagtgcagtgga--gggaggcccagagggctgtgggagcactgaagaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcctgcaggagg
s panTro4.chr15_GL392289_random      33359 643 -    187897 TGCAGAACGTGGGGCTGTGACTTTGAGATTGACTCTGGCGCTATGGAGGACCATTGTGGCGTGTGCCACGGCAACGGCTCCACCTGCCACACCGTGAGTAGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGCGGTGGGACCACTGT-GGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----TCCCCATCT-CCCCCGGGCCCCTGTCCTTGGCC-TCGTGGCCCCCACCCAGCCTAGAAATGGCTAAGCAGGG-AGGGCTTGCTGGGGTGG-------ATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACATGCAGAGACCTGTCCCCATGGGGAGTCTTCCTGTCCCAGAGACCCCAGGCAGGGCCACCCCAACTTGTGTGTGGCCCCTGGGCCTTTCAAAGAATGGTCGTCTCCTCCTGAATCTTCTGAGACCCC-AGCTCCATGCCCTCACCTCT-G-GTCTGTTTTGCACATGTTGCTGAAGTACTGACTGTGTG--------CTAGGTGATGAGGACATGCAGGTGAAGCGCTCAGTCCTGAAGGGGAACAGAACCTTCTGGTGtgatcagtgcagtgga--gggaggcccagagggctgtgggagcactgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcctgtaggagg
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      4326 627 -     28805 TGCAGAACGT-AGGCTGTGACTTCGAGATTGACTCTGGCGCTATGGAGGACCGCTGTGGCGTGTGCCACGGCAACGGGTCCACCTGCCACACCGTGAGTGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGGGTGGGACCGCTGT-GGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----TCCCCATCTCCCCCCGGGCCCCTGTCCTTGGCC-TGGTGGCCCCCACCCAGCCTAGAGATGGCTAAGCAGGG-AAGCCTTGCTGGGGTGG-------ATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACGTGCAGAGACCTGTCCCCATGGGGAGTCCTCCTGTCCCAGAGA----------------CCCGGCTTGTGTGTGGCCCCTGGGCCTTTCAAAGAATGGTAGTCTCCTCGTGAAGCTTCTCAGACCCC-AGCTCCGTGCCCTCACCTCC-G-GTCTGTTTTGCACACGTTGCTCGAGTACTGACTGTGTG--------CTAGGTGATGGGGACATGCAGGTgaagcgctcagtcctgcagagggacagaaccttctggtgtgaccagtgcagtgga--gggaggcccagagggctgtgggagcactgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcctgtaggagg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108919424 641 - 162156779 TGCAGAACGT-GGGCTGTGACTTTGAGATTGACTCCGGTGCTATGGAGGATCGCTGTGGTGTGTGCCACGGCAACGGCTCCACCTGCCACACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGGGTGGGACTGCTGTGGGGGAGGGGTGTGCTCTTCACCTGGTGgcccct-----tccccatct-cccctGGGCCCCTGTCCTTGGCC-TCGTGGTCCCCACCCAGCCTGGAGATGGCTAAGCAGGG-AAGCCTTGCTAGGGTGG------AATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACATGCAGAGACATGTCCCCATGGGA---TCTCCTGTCCCAGAGACCCCAGGCAGGGCCAACCCGGCTTGTGTGTGGCCCCTGGGCCTTTCAAAGAATGGCAGTCTCCTCCTGAAGCTTCTGAGACCCCCAGCTCTGTGCCCTCACCTCC-A-GTCTGTTTTGCACACGTTGCTCAAATACGGACTGTGTG--------CTAGGTGATGGGGACACGCAGGCGAAGCGCTCAGTCCTGCACGGGG-CAGAAGCTTCTGGTGTGACCAGTGCAGTGGA--GGGAGGCCCAGAGGGCTATGGGAGCACCGAGGAAGAAGGTCCTGGCCTG-----------------GGGAAGTCAGGGAAGGTTTCCTGTAGGAGG
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113743586 636 - 132174527 TGCAGAATGT-GGGCTGTGACTTCGAGATTGACTCCAGTGCCATGGAGGACCGCTGTGGTGTGTGCCACGGCAATGGCTCCACCTGCCATACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCATGGGTATGGGATGGGACCACTGTGGGGGAGGGGTGTGCTCTTTACCTGGTGGCTGCT-----TCCCTATCT-GCCCCAGGCCCC--ACCTTGGCC-TCGTGGTCCCCACCCAGCC-ATAGATGACTAAGCAGGG-AAGCCTTGCTGGGGTGG------AATTCTTATAGGAGTCA-GGGACCCCTAACCCAAGCACAGAGACCTGT-CCCGTGGGGAGTCCTCTTGTCCCAGAGACCCCAGGCAGGGCCGGCTCAGCTTGTGTGTGGCCCCTAGGCCTTTCAGAGGATGGTAGTCTCCTCCCAAAGCTTCTGAGACCCCCAGATCCACGCCCTCACCCCG-G-GTCTGCTTTGCACACGTTGTTCGAGTGCTGAC--TGTG--------CTAGGTGATGGGGACATGCAGGTAAATCGCTcagtcccgcagggga-cagaaccttct-gtgtggccagtgcagtgca--gggaggcccagagggctgtgggagcaccaaggaagatgctcctggcctg-----------------gggaagtcagggaaggtttcccgtgggagg
i calJac3.chr10                  C 0 I 23
s mm10.chr9                       90189613 598 + 124595110 TACAGAACGT-GGGCTGCGACTTTGTGATTGACTCTGGTGCTGAGGAGGACCGCTGTGGCGTGTGCCGGGGGGATGGCTCTACTTGCCAGACTGTGAGCAGGACCTTCAAGGAGACTGAAGGCCAGGGTATG-GTTGGGGCTGCTGGGCTGTGAATGTATGCTTGTAATCCTGTTGCT----------------T--------GCCCCTG----TGGTC-CTCGGGTCCTCGTCTAGACTAGACATAGC--ATCAGAGCACTCCTTGTTTGACCAGGGTCCTAATCCTCACAGCAGTCAGTAAATCCTTGTCACAAGT---GAGACCTGTTCTCTTAGGG-GTTCTTCTG----AGTGAC----------------------TGTGAGTGGTGGGTAGTCCTTTCTGAG---GGCTGTTGACTTCTGAAGTTTT----------AGTACCATGTCCCAGCCTTGAG-GTCTGAGTCACACATATTGCTTAAGTGCCAACTGTGTGATTTAACTCTGG-----GGGGACACCTAGGTGAAGAGCTTA------CAGGTGA-CAGAATCTTCA-CTGTGACAAAGGCAGTAGGCTGTGTATTTCAGGGAGAGAAGGAAACACCAAGCTAGAAGGT-CTGACCTgggaagtcagggaagtcagggaaatcagggaagGCTTCTCATAGGACG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212109 516 +  91889043 TCCAGAATGT-GGGTTGTGACTTCGAGATCGACTCTGGTGCCATCGAGGATCGCTGTGGCGTGTGCCACGGCAATGGCTCCACCTGCCACACCGTGAGCGAGACCTTCGAGGAGTCTGAGGGCCTGGGTACGGGGAGGCGCTGCTGG-TGGGAG----GTGCTCTTGACTTGGCGGCCCCTCCCCCTCCCTGTCT-CCCTCTAGGGCCTGCCCTGGACCGCCAGGGTCCCCACCCTGGCTA-AGAT-CCGAAGCAGGG-GAGCCACCCT-GCCTGG--------TCCTTGCAGGTGT--------------------------------------TGGGGTGTCCTCCTGCCCCAGGGACCCCGG----------CCTGGCT---------------GATCTTGCTTCG---GGCTGCCTTCTTGGGAGGCTTCAGAGACCCCCAGCTCCACTGCTATACCTCT-GTGTCTGTTTTGCATGTGTTGCTTGAGGGCTGAC--TGTG--------CTAGGTGAGGAGGGACGGCGGCTGAAGGGTTTA--------------------------GTGT-----------------Aggaggcccagcaggct--gagagca---------------ctgacctg-----------------gggaggtcagcagggacttcccataggagg
i canFam3.chr3                   C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=115371.000000
s hg38.chr15_KI270850v1_alt          31363 209 +    430880 cggaagttgagctgaatcataaa--actcagaagagatgg-aatgggcattccaaatggaggaaagagct-tgcgc-cagagccctggaggcaagaagggaAGGCAGGGCCAG----CTATGG-----GGCCTTGAGTGCCAGGCTGAGAAGCTTAGATTTCATCCcagagatgcagtgcagtgtggtggataaagcactggccctggaggctgcttatattg
s panTro4.chr15_GL392289_random      34002 209 -    187897 cggaagttgagctgaatcataaa--actcagaagagatgg-aatgggcattccaaatggaggaaagagct-tgcgc-cagagccctggaggcaagaagggaAGGCAGGGCCAG----CTATGG-----GGCCTTGAGTGCCAGGCTGAGAAGCTTAGATTTCATCCcagagatgcagtgcagtgtggtggataaagcactggccctggaggctgcttatattg
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      4953 208 -     28805 cggaagttgagctgaatcataaa--actcagaagagatgg-aaagggcattccaaatggaggaaagagct-tgtgc-cagaa-cctggaggcaagaagggaAGGCAGGGCCAG----CTATGG-----GGCCTTGAGTGCCAGGCTGAGAAGCTTAGATTTCATCCcagagatgcagtgcagtgtggtggataaagcactggccctggaggctgctcatatcc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108920065 208 - 162156779 TGAAAGTTCAGCTGAATCATAAA--ACTCAGAAGTGATGG-AAGGGGTCTTCCAAATGGAGGAAAGTGCT-TGTGC-CAGAG-CCTGGAGGCAAGAAGATAAGGCAGGACCAG----CTATGg-----ggccttgaatgccaggctGAGAAGCTTAGATTTCATCCCAGAGATGCAGTACAGTGTGGTGGATAAAGCACTGGCCCTGGAGGCTGCTCATATCC
i papAnu2.chr7                   C 0 C 0
s mm10.chr9                       90190211 162 + 124595110 TGGAGAATGAGCCTAATGATGAATGACTCCAGAGATTGGGTGAGGAGAATCCCAGCTAGAGGCAA--GCT-TGTGG-TACAG-CCTGCC--CATGTAAGGCAGGTAG-----G----CTGTGA-----GGCTAT-ACTGCTGGGCTCCACAGTTTGCATTTCTTCCTAGGGCTG---------------------------------------ACTTGTATCC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212625 172 +  91889043 cagcagtttagctgaatcatgaaagactcaggtgaggtgg-gagaggtgttacattcagagaaaagagctgtgtcctcaaag-cctggaggc-------gCATCTGTGTCCAGGGACCCATGGGGGATGGCCCTGAGTGCTGGGCC-AGATGTTCAG----CCCCCCTGAGCTG---------------------------GATCCGTAGTCT----------
i canFam3.chr3                   C 0 C 0
e calJac3.chr10                  113744222  23 - 132174527 I
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=1286652.000000
s hg38.chr15_KI270850v1_alt          31572 1202 +    430880 cagcaggacgctcatgca----cgttactc-tccctgtctgcctcactttgctcatctgtaaaatggggttaacaatagtacc--atgctatagggccattacccatgagcttacacatgtgaagtgctgagagtagtgcccggcacgtgatgggtgTGATGGAAGTGAATGAATAAAAGCAGGCTGCGTGGGGATGAGGAGGGTGTCCCAGGAGAAAGGCCTGGGCACTTTGGTTTTTTTTAGAAAGAGAATGCCAGCCGGCCCTTAGAGTAGGGGATGGATCCAGCCTTA-TG--ATGA-GACCAGTTTA-------GGTCCCCAAGAGAGGAGTGACGGGGCATG-GCCACGGGGTCAGGATTT-------------GTGGCACCTCCGCAAGGTTTTGGTGACCCATGACAGATCCGA-----G---CAATTTG--------GGGAGCTCAGACTTTAAAGCTAATG--GCGAAATCTTTGGCATCAGCAGGC-GGAGGCAAGTGGGGAGAGATGTGAGGGGAGCAGGTGGGGATAAGCAAGCTTCTCACCCCAGGCA------------CAACCCTTGCCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCAGCACACGTGAGGTCCGCATCCAGGAGGTGGCTGAGGCTGCCAACTTCCTGGCACTGCAGAGCGAGGACCCGGAGAAGTACTTCCTCAATGGTGGCTGGACCATCCAGTAGAACGGGGACTACCAGGTGGCAGGGACCACCGTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCGGGTCCCACCAAGGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGCGTGG--GGAGCAGA-GGC----------------------GGAGTCCCCAGGCCC----------------------AGCACCTCCCAT-----GGTA-GGTCTCGTCCTGGAGGAGT--GAGCCCTGGGTTAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGACCCTCCTG------------CTGAGGCCTCT--------ACCTCGGTTTCCCCATC-TTTAAGATGGCCCAACTGTGTAGCTGCAGTTCACAGAGGTGGCTGGGGTCAGCTCCTTTAAGA--------CTGGGTGG-------------ATGGAGAAGACACCTCGTGCTCAC-GGGCCCCCGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCTGGGGTGCACTACGAGTACACCATCCACAGGGAGGCAGGTGGCCACGGCGAGGTCCCGCCGCCCGAGTTCTCCTGGCACTGTGGGCCCTGGACCAAGTGTACAGTCACCTGTGGCAGAGGTGAGA
s panTro4.chr15_GL392289_random      34211 1202 -    187897 cagcaggatgctcatgca----cgttactc-ttcctgtctgcctcactttgctcatctgtaaaatggggataacaatagtacc--atgctatagggccgttacccatgagcttacacatgtgaagtgctgagagtagtgcccggcacgtgatgggtgTGATGGAAGTGAATGAATAAAAGCAGGCCGTGTGGGGATGAGGAGGGTGTCCCAGGAGAAAGGCCTGGGCACTTTGGTTTTTTTTAGAAAGAGAATGCCAGCCGGCCCTTAGAGTAGGGGATGGATCCAGCCTTA-TG--ATGA-GACCAGTTTA-------GGTCCCCAAGAGAGGAGTGACGGGGCATG-GCCACGGGGTCAGGATTT-------------ATGGCACCTCCGCAAGGTTTTGGTGACCCATGACCGATCCGA-----G---CAATTTG--------GGGAGCTCAGACTTTAAAGCTAATG--GCGAAATCTTTGGCATCAGCAGGC-AGAGGCAAGTGGGGAGAGATGTGAGGGGAGCAGGTGGGGATAAGCAAGCTTCTCACCCTGGGCA------------CAACCCTTGCCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCAGCACACGTGAGGTCCGCATCCAGGAGCTGGCTGAGGCTGCCAACTTCCTGGCACTGCAGAGCGAGGACCCGGAGAAGTACTTCCTCAATGGTGGCTGGACCATCCAGTAGAACGGGGACTACCAGGTGGCAGGGACCACCGTCACATACGCACGCAGGGGCATCTGGGAGAACCTCACGTCCCCGGGTCCCACCAAGGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGCGGGG--GGAGCAGA-GGC----------------------GGAGTCCCCAGGCCC----------------------AGCACCTCCCAT-----GGTA-GGTCTCGTCCTGGAGGAGT--GAGCCCTGGGTTAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGACCCTCCTG------------CTGAGGCCTCT--------ACCTCGGTTTCCCCATC-TTTAAAATGGCCCAACTGTGTAACTGCAGTTCACAGAGGTGGCTGGGGTCAGCTCCTTTAAGA--------CTGGGTGG-------------ATGGAGAAGACACCTCGTGCTGAC-GGGCCCCCGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCTGGGGTGCACTATGAGTACACCATCCACGGGGAGGCAGGTGGCCACGGCAAGGTCCCGCCGCCCGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGTACAGTCACCTGCGGCAGAGGTGAGA
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      5161 1212 -     28805 cagcaggaagctcatg-a----cattacta-tccctgtgtgcctcactttgctcatctgtaaaatggggatgacaacagtacc-tatgctatagggccgttacccatgagcttacacacgtgaggtgatgagagtagtgcccggcacatgatgggtgTGACGGAAGTGAATGAATAAAAGCAGGCCGCGTGGGGATGAGGAGGGTGTCCCAGGAGAAAGGCCTGGGCACTTTGG-TTTTTTTAGAAAGAAGATGCCAGCTGGCCCTTAGAGTAGGAGATGGATCCAGCCTTA-TG--ATGA-GACCAGTTTA-------GGTCCCCAAGAGAGGAGTGACGGGGCATG-GCCACAGGGTCAGGATTT-------------GTGGCACCTCTGCGAGGTTTTGGTGACCCAAGACAGATCCGA-----G---CAATTTG--------GGGAGCTCAGACTTGAAAGCTAATG--GCGAAATCTTTGGCATCAGCAGGC-GGAGGCAAGTGGGGAGAGACATGAGGGGAGCAGGCTGGGATAAGCAACCTTCTCACCCTGGGCA-CAACCTATGCGCAACCCTTGGCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCGGCGCACGTGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCCAACTTCCTGGCACTGCGGAGCGAGGACCCAGAGAAGTACTTCCTCATTGGTGGCTGGACCATCCAGTGGAACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCAGGTCCCACCAAGGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGCGGGG--GGAGCAGA-GGC----------------------GGAGTCCCCAGGCCC----------------------AGCACCCCCCAT-----GGCA-GGCCTGGTCCTGGAGTAGT--GAGCCCTGGGTCAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGGCCCTCCTG------------CTGCGGCCTCT--------ACCTCGGTTTCCCCATC-TTTAAAATGGCCCAATCGTGTAGCTGCAGTTCACAGAGGTGGCTGCGGTCAGCTCCTTTAGGA--------CTGGGTGG-------------ACGGAGAAGGCACCTCGTGCTCAT-GGGCCCCCGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTGCACTACGAGTACACCATCCACAGGGAGGCAGGTGGCCACGGCGAGGTCCCGCTGCCCGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGCACAGTCACCTGCGGCAGAGGTGAGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108920273 1192 - 162156779 CAGCAGGACGCTCATGCA----CGTTACTA-TCCCTGTCTGCCT--ctctgctcatctgtaaaatggggataacaatagtaCC-TAGGCTATAGGGCCGTTACCCACGAGCTTACAC-----AAGTGCTGAGAGTAGTGTCTGGCACGTGATGGGTGTGACggaagtgaatgaataaaagcaGGCTGTGTGGGGATGAGGAGGGTGTCCCAGGAGAAAGGCCTGGgcactttgt-tttttttaggAAGAGAA-------------TTAGTGTAGGGGATGGATCCAGCCTTA-TG--ATGA-GACCAGTTTA-------GGTCCTCAAGAGAGGGGTGACGGGGCATG-GCCATGGGGTCAGGATTT-------------GTGGCACCTCTGTGGGGTTTTGGTGA-CCACGACACATCTGA-----G---CAATTTT--------GGGAGCTCAGACTTTAAAGCTAATG--GCAAAATCTTTGGCATCAGCAGGC-AGAGGCAAGTGGGGAGAGATGTGAGGGAAGCGGGTGGGGATAAGCAACCTTCTCACCCTGGGCA-CAACCTACCCACAACCCTTGGCTGACAGGGTATGTGGATGTGGGGCTGATCCCAGCCGGCGCACGCGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCCAACTTCCTGGCACTGCGGAGCGAGGACCCGGAGAAGTACTTCCTCAATGGTGGCTGGACCATCCAGTGGAACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCGGGTCCCACCAACGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGGTGGG--GGAGTGGA-GGC----------------------GCAGTCCCCAGGCTC----------------------AGCACCCCTCAT-----GGCA-GGTCTCGTCCTGGAGGAGT--GAGCCCTGGGTCAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGGccctcctg------------ctgtggcctct--------ACCTTGGTTTCCCTATC-TTTAAAATGGCCCAATGGTGTAGCTGCAGTTCACAGAGGTGGCTGGGGTTGGCTCCTTTAGGA--------CTGGGTGG-------------ATGGAGAAGACACCTCGTGCTCAC-GGGCTCCTGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCTGGGGTGCGCTACGAGTACACCATCCACAGGGAGGCAGGCGGCCATGGCGAGGTCCCGCCACCCGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGCACAGTCACCTGTGGCAGAGGTGAGA
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113744245 1173 - 132174527 CAGCAGGACGCTCATTca----tgttacta-tccctgcctgcctcactttcctcatctgtgaaatggagacaacaatagtacc-tacatcctagggttgctattcat---tttacacgtgagaagtcctgcgcacagtgcccggcgcgtgatGGGT-TTACAGAAGTGGGTGAATAAAAGCA-GCCTTGT-GGGCTGAGGAGGGCGATGCAGGAGAAAGGCCTGAGCATGCTGG--CATTTTAGAAAGAGAATGCCAGCTGGCCCTGAGTGTTGGG--TGGGCCCAGCCTTG-TG--ATGA-GACCAGTTTA-------GGTCCCCAGGAGAGGGGTGATGGGGCATG-GACACGAGGTCAGGATTT-------------GGGGTGCCTCTGTGAGGTTTTGGTGACCTACGACATATCTGA-----G---CAATTCT--------GGGAGCTCAGACTTTTAAGGTAATA--GTGGAATCTTTGGCATCAGCAGGTGGGGGGAAAGTGGGGAGAGAGGTGAGAGTGGTGGGTGGGGATAGGCAACCCTGTCACCCTGAGCA-CAACTTACACACAACCCCTGGCCGGCAGGGTATGTGGATGTGGGGCTGATCCCAGCTGGCGCACGTGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCTAACTTTCTGGCACTGCGGAGCCAGGACCCGAAGAAATACTTCCTCAATGGCGGCTGGACCATCCAGTGGGACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACACACGCAGGGGCAACTGGGAGAACCTCACGTCCCCAGGTCCTACCAACGAGCCTATCTGGATCCAGGTACCTGCTTCCTGAGGCCCAAG-AGGG--GGAGCAGA-GGC----------------------AGAGACCCCAGG--------------------------------TCCAT-----GGCAGGGTCTCATCCTGGAGGAGT--GAGCCCTGGGGCAGTCACAGAG-----------------------------------------TCCTG------------TTGCAACCTCT--------GCCTCAGTTTCCCCATCTTTTAAAATGGCCCCATGGTGTAGCTGCAGTT--CAGAGGTGGCTGGGGTCAGCTCCTTTAGGG--------CTGGGTGG-------------ATGGAGAGGATGCCTTGTGCTCAC-AGG-GCACGCCTGCCCG-CCCAGCTACTGTTCCAGGAGAGCAACCCCGGGGTGCACTATGAGTACACCGTCCACAGGGAGGCAGATGGCCATGGCGAAGTCCCGCCACCTGAGTTCTCCTGGCACTATGGACCCTGGAGCGAGTGCACGGTCACCTGCGGCACAGGTGAGA
i calJac3.chr10                  I 23 C 0
s mm10.chr9                       90190373 1133 + 124595110 CCACAGGAGCCCTATGCGGAACAACtaacc-tacctcagtgcttca-tttcctcatctgtaaagtgggtctaacaacagtgtcttatgtcatggagt--------------------------agtGCTGGGCACA--CCCAAGAACAGGGTTGCT-TAATGGAAA-AAGAGAATTCAGGCGACCC-------------------ATTGCAAG-GAAAGGCCCCAG-----TGG--CTTTCCAGGACAGGAG--------------------AGATGATGGATCAGGCTCAACTG--ATAATGATCAGTTCATTTTCCTAGTTTCCCAGACAGTGATGGTGGGCTATGAGCCATAGGGGAAGGATCT-------------GTGGGCCCTTTCTGAAGCCTTGGTGACCCAGAGTGGATACAATACCTA---TATTTTTTTGGGGGAGGGGACTCAGAATAATGAACTGATGGTGTGGAGTCGTTGGCTTCAGCA-GC-AGAAGCAAGTGCAGGAAGGTG--------------GGGGGCAACTGACTGATTAAACCCGGGGACCAAACTGTA--CCATCCT--GCCCACAGGGTATGTGGATATAGGGCTGATCCCAGCCGGAGCCAGAGAGATTCTTATTGAGGAGGTGGCTGAGGCTGCCAACTTCCTGGCCCTGCGGAGTGAGGACCCAGATAAGTACTTCCTCAATGGAGGCTGGACCATCCAGTGGAATGGAGACTACCGAGTGGCAGGCACTACCTTCACCTATGCACGGAAGGGCAACTGGGAGAATCTCACATCCCCAGGCCCCACCAGTGAGCCTGTCTGGATCCAGGTGCCTGCCTCTAGGGGCCAGGATGGGA--GGAATAAATGGG----------------------GTGGTCCCCAAG-------------------------------------------GTAGGATATCA------AGGGGG--AAACCTTAGGGCTCT-GTAGGATCT----GATTCTGAG-----------------CTATGCTCAGCTG------------CTGGGGTCTCTGAGTCTCGGTCTCAGTTTTCTCCTC-TCTAGAGTAGGTCTCCAGTACAGCT-TAGTTCACAGAGATGGCTGGAGATGACCC---TAGGG-GCAGGTTCTGAGCAG-------------ATAGAGAAGAGCCCTTGTGCTCAC-TGGCCCCCATTTGCCTGTCCCAGCTGCTGTTCCAGGAGAAGAACCCTGGGGTACACTACCAGTATACCATCCAGAGGGA------CAGCCATGATCAAGTCCGACCACCTGAGTTCTCCTGGCATTATGGGCCCTGGAGCAAGTGCACGGTCACTTGTGGCACAGGTGAGA
i mm10.chr9                      C 0 I 1512
s canFam3.chr3                    58212797 1182 +  91889043 -AGCAGAGCCGGCgggca----agttactcatccctctgggcctcagtctcctcatctgtcacacaggggtgacagaagtacc-tgtgtcct-------------------------------agtgtAAAGCATA---------------------TAAGGTCAGTGAAAGGAGAGAGGCCAGCAGC--------AAGGATGGTGTCCCAAAGGAA--------------------------------------------------------------GGGTGCAGGCCGA-TGACATGG-AGCCAG-CCA-------GGTCTCTAGGAGAGGGGTAAAGAGGTGTGGGTCCAGACAGCAGGATTTGAGCCCTTCTGAGGAGGAGCCCTTCTGAGATTTAGGTGACCTAGGACAGATTGAA-----GCTCCACCTTT-----GGGGGGAGCTTGGAATCTTGAGGTAATG--G---AATC--TGCCACCAGCGGCC-TGGAGAA-----GGGGAGACA--AGAGAAGGGGCTGAGGGCAGCCCACACCCTCACACTCTGAA------------CAACCCCTGGCCAATAGGGTACGTGGACGTGGGGCTGATCCCAGCCGGTGCCCGTGAGATCCGCATCGAGGAGATGGCCGAGGCTGCCAACTTCCTGGCCCTGCGCAGTGAGGACCCTGATAAGTACTTCCTGAATGGGGGCTGGACCATTCAGTGGAATGGGGACTACCAGGTGGCCGGCACCACCTTCACGTACGCACGCACAGGCAACTGGGAGAACCTCACGTCCCCAGGGCCCACCAACGAGCCCATATGGATTCAGGTGCCCGCCTCCCAAGGCTCAGGCTGGGAAGCAGCAGG-GGCTCGGGGAGCAGCTCAGTTTTGGGGAGTAGCTAAGGCTGGGGAGCAACTGGGGTTTGGGGAGCAGCTGGGATTTGGGAGCA-GCTCGGGCTGGGGAGCAGCTGGGGCTCAGGAGCAGGAGTGGGACCTGAGGGATCCTGTGCACCCCTACACCCACCCCCAAACCCCGCAGCAGAACAGAGCCCCGGGGACTCT--------GCCTTGGGTTCCCCTAC-----------------AGTGTAGCCCCAGGTCCCACAGG-GGCTAGAGTCAGCTCCTTTGGGATGGCTCCTCTGGGTAGCAAGTCCTGGTGTCTGGAGGGGACACCCCGTGCTCACAGGGCCCCCACCTGCCTGCCCCAGCTGCTGTTCCAGGAGAGCAACCCCGGAGTGCGCTACGAGTACACCATCCAAAGGGAGGCGGATGGTCAGGGCCAGGTCCAGCCACCTGAGTTCTTCTGGGACTATGGGCCCTGGACCACATGCACAGTCACGTGTGGTACAGGTGAGG
i canFam3.chr3                   C 0 C 0
e chlSab2.chr29                    1321081    0 +  24206276 C
e macFas5.chr7                    61592994    0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211   10 +  99152023 I

a score=210701.000000
s hg38.chr15_KI270850v1_alt          32774 245 +    430880 AGTGGGGCAGGCACAGCC-CCGCCagcaggggct-tcatctctggacagg--------------------------------------------------------------------------------------------gaca-ccggcttcagctcccagctcactg--------ctgggccaccatgggtttagaa-gtttgcttctctgagcctcagttccccatctgtgagatgaggctagcaaccgccccatgtcccaggcccactgggagggtaaatggatgaggcaggtg-ggtgc-tggctcgcggcgtgtgctcagtgtgctgcagctctTGGCGTTCT
s panTro4.chr15_GL392289_random      35413 245 -    187897 AGTGGGGCAGGCACAGCC-CCGCCagcaggggct-tcatctctggacagg--------------------------------------------------------------------------------------------gaca-ctggcttcagctcccagctcactg--------ctgggccaccatgggtttagaa-gtttgcttctctgagcctcagttccccatctgtgagatgaggctagcaaccgccccatgccccaggcccactgggagggtaaatggatgaggcaggtG-GGTGC-TGGCTCGCGGCGTGTGCTCAGTGTGCTGCAGCTCTTGGCGTTCT
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6373 245 -     28805 AGTGGGGCAGGCACAGCC-CCGCCagcaggggct-tcatctctggacagg--------------------------------------------------------------------------------------------gaca-ctggcttcagcttccagctcactg--------ctgggccaccatgggtttagaa-gtttgcttctctgagcctcagttccccatctgcgagataaggctagcaactgccccatgtcccaggcccactgggagggtaaatggatgaggcaggtG-GGTGC-TGGCTCGCGGCGCGTGCTCAGTGTGCTCCAGCTCTTGGCATTCT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108921465 245 - 162156779 AGTGGGGCAGGCACAGCC-CCGCCAGCAGGGGCT-CCGTCTGTGGACAGG--------------------------------------------------------------------------------------------GACG-CTGGCTTCAGCTTCCAGCTCACTG--------CTGGGCCACCACAGGTTTGGAA-GttggcttctctgagcctcaattcccCATCTGTGAGATGAGGCTGGCAACCGCCCCATGTCCCAGGCGCACTGGGAGGGTAAATGGATGAGGCAGGTG-GGTGC-TGGCTCGTGGCGCGTGCTCAGTGTGCTCCAGCTCTTGGCGTTGT
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113745418 334 - 132174527 AGAGGGGCAGGCACAGCC-CCGCCAGCAGGGGCT-TTGGCTCTGGACAGGGATGCTGGCTTCAGCCTCCAGCTCACTGCTGGGCCACCACAAATCTGGACAGGGACGCtggcttgagctgggccaccacgggtttggacagagacg-ctggcttcagcctccagctcactg--------ctgggccaccacaggtctggag-gtttgcctttctgagcctcggttccccatc-gtgaaatgaggctggcaattgccccctgtctcatgcccgctggga-ggtaaatagatgaggcaggtg-ggggc--agcttgtGGCGAGTGCTCAGTGTGCCCCAGCTCTTGGTGTTCT
i calJac3.chr10                  C 0 C 0
s canFam3.chr3                    58213979 238 +  91889043 AGAGGGGAGGGCACAGCCACTGCCCACCGGGGCCATCATCTCGGGGCAGC--------------------------------------------------------------------------------------------CATGCCTGGCTTCAGCCTCCA-CTCACTTTCCTATTCCTGGGCCACCGTGAGCTTGGAATGCTGGC--CTTTGGGTCCTGGAGTCCCACT--GGGGGTGCTGCTGATGGCTG-----TGTCCC-----CACT-----GGTAGAGGGATGAGGccggcacagtgcctggcacacag-gggtgctcggtaTGTCTCAGCTGTTGGCACTCT
i canFam3.chr3                   C 0 I 528
e mm10.chr9                       90191506 1512 + 124595110 I
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=77730.000000
s hg38.chr15_KI270850v1_alt          33019 95 +    430880 CCCTCCAGTGGACACAGCTCCCCCTTGATTTTGTCCTTGCTCAGCTCCGGCAGGTTTTGTGCCTGCATTTCTGCTGCGTCCCGGAGACCAGCCCA
s panTro4.chr15_GL392289_random      35658 95 -    187897 CCCTCCAGTGGACACAGCTCCCCCTTGATTTTGTCCTTGCTCAGCTCCGGCAGGTTTTGTGCCTGCATTTCTGCTGCGTCCCGGAGACCAGTCCA
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6618 95 -     28805 CCCTCCAGGGGACACAGCTCCCCCTTGATTTAGTCCTTGCTCAGCTCTGGCAGGTCTTGTGCCTGCATTTCTGCTGCGTCCTGGAGACCAGTCCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108921710 95 - 162156779 CCCTCCAGCGGACACAGCTCCCTCTTGATTGTGTCCTTGCTCAGCTGCGGCAGGTCTTGTGCCTGCATTTCTGCTGCGTCCTGGAGACCAGTCCA
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113745752 95 - 132174527 CCCTCCAGCGGGCACAGCTTCCTCTCGATTTTGTCCTGGCTCAGCTCTGGCAGGTCTCATGCCTGCATTTCTGCTCCGTCCTGGAGACGACCCCA
i calJac3.chr10                  C 0 I 1334
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=59909.000000
s hg38.chr15_KI270850v1_alt          33114 128 +    430880 G--GCCCCTCACCACACTGACTTATTTCCCTGAACTATTTATGAAAAGTAGGGCAATTTCATTAACTCCGACTCTTCCTCCCCATATTTCCCTCAGTCTCCCCCCATGCTCCTCAGTCTCCCCTCTCTGT
s panTro4.chr15_GL392289_random      35753 130 -    187897 GTGGCCCCTCACTACACTGACTTATTTCCCTGAACTGTTTATGAAAAGTAGGGCAATTTCATTAActccgactcttcctccccatatttccctcagtctccccccatgctcctcagtctcccctctctgt
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6713 125 -     28805 GTGGCCCTTCACCACACTGACTTATTTCCCTGAACTATTTATAAAA---AGGGCAATTTCATTAACTCTGACTCTTCCTCACTGTATTTCCCT--GTCTCCCCCTGTGCTCCTCAGTCCCCTTTCTCTGT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108921805 130 - 162156779 GTGGCCCCTCACCACCCTGATTTATTTCCCTGAACTATTTGTAAAAAGTAGGGCAATTTCTTTAACTCCGActcttcctccccatatttccctcagtctccccccatgctcctcagttcctcctctctgt
i papAnu2.chr7                   C 0 I 3
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=161.000000
s hg38.chr15_KI270850v1_alt          33242 3 +    430880 CTC
s panTro4.chr15_GL392289_random      35883 3 -    187897 ctc
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6838 3 -     28805 GTT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081 0 +  24206276 C
e papAnu2.chr7                   108921935 3 - 162156779 I
e macFas5.chr7                    61592994 0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=51970.000000
s hg38.chr15_KI270850v1_alt          33245 143 +    430880 TTTGTCTCCTCCCCACTGCTCCTCAGTCTCCCCTCTGCCCCTCCGTCTCCTCCC--ATACTCCTCAGTCTCCCCCCATGCCTCTCAGTCTCCCCCCATACCCCTCGGTCTCCCCCCATACCCCTCGGTCTGCC-CCCATACCCCTC
s panTro4.chr15_GL392289_random      35886 116 -    187897 tttgtctcctccccactgctcctcagtctcccctctgcccctccgtctcctccc--atactcctcagtctccccccatgcctctcagtctccccccatacccctcggtctcccccCAC----------------------------
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6841 142 -     28805 TTTGTCTCCTCCC--ATACTTCTCAGTCTCCCCTCTGCCTCTCAGTCTCTTCCC--ATACCCCTCAGTCTCTTCCCATACCCCTCAGTCTCCCCCCATACCCCTCAGTCTCCCCCCATACCCCTCAGTCTCCCTCCCATTTCCCTC
i nomLeu3.chr6_GL398151_2_random C 0 T 21
s papAnu2.chr7                   108921938 144 - 162156779 tttgtctcctccccactgctcctcgatctcccctctgcccctccgtgtcctccccactgctcctcggcctcccctc-tgcccctccgtctcctcccatacttctcagtctccccccatgcccctcaatctccc-cccatacccctc
i papAnu2.chr7                   I 3 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=4594.000000
s hg38.chr15_KI270850v1_alt          33388 32 +    430880 GGTCTCCCCCCAATATCCCTCAGTTTCCCTCC
s panTro4.chr15_GL392289_random      36002 19 -    187897 -------------TATCCCTCAGTTTCCCTCC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6962 32 -     28805 AGTCTCCCTCCCATTTCCCTCGGTCTCCCCCC
i nomLeu3.chr6_GL398151_2_random T 21 T 11
s papAnu2.chr7                   108922082 11 - 162156779 ---------------------ggtctcccttc
i papAnu2.chr7                   C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=15559.000000
s hg38.chr15_KI270850v1_alt          33420 68 +    430880 GGCCCTCCAGTACCCCCGCCACGCCCCTCAGTCTTCCTCCCCCGGCTCGGTCTCCCCCGCCATTCCTT
s panTro4.chr15_GL392289_random      36021 68 -    187897 GGCCCTCCAGTACCCCCGCCACGCCCCTCAGTCTTCCTCCCCCGGCTCGGTCTCCCCCGCCATTCCTT
i panTro4.chr15_GL392289_random  C 0 C 0
s papAnu2.chr7                   108922093 66 - 162156779 tgtcctccagtcccac--ccatgcccctcAGTCTTCCTCTCCCCACTCGGTCTCCCCCGCCGTTCCTT
i papAnu2.chr7                   C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e nomLeu3.chr6_GL398151_2_random      6994 11 -     28805 T
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=13835.000000
s hg38.chr15_KI270850v1_alt          33488 100 +    430880 GGTCTCCCCCCAGCCCCCCAGTCCCC-CCCGACGCCCCTTGGTCTTCCTCCCCCTGCTCGGTCTGCCCTGCTGTTCCTCGATCTCCCCACACCTCAGTCTC
s panTro4.chr15_GL392289_random      36089 101 -    187897 GGTCTCCCCCCAGCCCCCCAGTCCCCACCCGACGCCCCTTGGTCTTCCTCCCCCTGCTCGGTCTGCCCTGCTGTTCCTCGATCTCCCCACACCTCAGTCTC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6983  52 -     28805 GGTCTCCCCCCAGCTCCCCA-------------------------------------------------GCTGTTCCTTGGTCTCCCCACACCTTAGTCTC
i nomLeu3.chr6_GL398151_2_random T 11 I 2
s papAnu2.chr7                   108922159  22 - 162156779 -------------------------------------------------------------------------------GGTCTCCCCACACCTCAGTCTC
i papAnu2.chr7                   C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=600.000000
s hg38.chr15_KI270850v1_alt          33588 2 +    430880 CC
s panTro4.chr15_GL392289_random      36190 2 -    187897 CC
i panTro4.chr15_GL392289_random  C 0 C 0
s papAnu2.chr7                   108922181 2 - 162156779 CC
i papAnu2.chr7                   C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e nomLeu3.chr6_GL398151_2_random      7035 2 -     28805 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=57548.000000
s hg38.chr15_KI270850v1_alt          33590 113 +    430880 CCTTTGTCTCTTAGTCCTCCCCTTTCCCCCTCAGTCTTCCCATCGTTGACACTCAGTATCCTCAGGGTCTCAGAATCGGGAATCTGATATACAGACGTTTGAGCATTCCTTCA
s panTro4.chr15_GL392289_random      36192 113 -    187897 GCTTTGTCTCTTAGTCCTCCCCTTTTCCCCTCAGTCTTCCCATCGTTGACACTCAGTATCCTCAGGGTCTCAGAATCGGGAATCTGAGATACAGACATTTGAGCATTCCTTCA
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7037 113 -     28805 CCTTTGTCTCTTAGTCCTCCCCTTTTCCCCTTAGTCTTTGCATCGTTGACACTCAGTATCCTCAGGGTCTCAGAATCGGGAATCTGACATACAGACATTTGAGCATTCCTTCA
i nomLeu3.chr6_GL398151_2_random I 2 C 0
s papAnu2.chr7                   108922183 112 - 162156779 GCTTTGTCCCTTAGTCCT-CCCTTTTCCCCTCAGTCTTCCCATCGTTGACACTCAGTGTCCTCAGGGTCTCAGAATCGGGAATCTGAGATACAGACATTTGAGCATTCCTTAA
i papAnu2.chr7                   C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=299380.000000
s hg38.chr15_KI270850v1_alt          33703 414 +    430880 AATGCTATTATGATGACAAAGTGAAAA-TGGAGAACTGGGCAGTTACCTTCCAAAGCTAGGAAACCCATTTTATCTAATACAGCTGTCtttattttattttat----------------tttgttttattttattttatttgagatggagtctcactctgtcgcccaggctggagtgcagtggcgcgatcttggctcactgcagcctccgcctcccaggttccagcaattctccttcctcagcctcccgagtagctgggatttacaggcacgcaccaccatgcctggctaattttttattagtggtagagatggggtttcaccatg-ttggccaggctggtcttgaactgctgacctcaggtgattcgcccgccttggcctcccatagtgctg----ggattacaggcgtgagccactgtgcctggccTAATACAG
s panTro4.chr15_GL392289_random      36305 409 -    187897 AATGCTATTATGATGACAAAGTGAAAA-TGGAGAACTGGGCAGATACCTTCCAAAGCTAGGAAACCCATTTTATCTAATACAGCTGTCtttattttatttt---------------------gttttattttgttttatttgagatggagtctcactctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcagactccgcctcccaggttccagcaattctccttcctcagcctcccgagtagctgggatttacaggcacgcaccaccatgcctggctaattttttattagtggtagagatggggtttcaccatg-ttggccaggctggtcttgaactgctgacctcaggtgattcgcccgccttggcctcccatagtgctg----ggattacaggcgtgagccactgtgcctggccTAATACAG
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7150 430 -     28805 ATTGTTATTATGATGACAAAATTAAAA-TGGAGAACTGGGCAGGTACCTTCCAAAGCTAGGAAACCCACTTTATGTAATACAGCTGTCtttattttattttgttttattttattttaaatttattttattttattttatttgagagggagtctcactctgtcgcccaggctagactgcaatggcgcaatctcggctcactgcagcctctgcctcccaaattccagtgattctccttcctcagcctcccgagtagctgggatttacaggcacgtgccaccatgcccagctaattttttgttattagtagagatggagtttcaccatg-ttggccaggctggtcttgaactcctgttctcaggtgattcgcctgcctcggcctcccatggtgctg----ggattacaggcgtgagccactgcgcctggccTAATACAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108922295 398 - 162156779 AATGCTATTATGATGACAAAACGAAAA-TGGAGAACTGGGCAGATACCTTCCAAAGCTAGGAAACCCATGTTATCTAATACagttgtcttta--------------------------------tttattttattttatttgagatggagtctcaccctgtcgcccagactggagcgcaatggcatgatctcggctcacggcagcctccacctcccaggttccagtgattctcctgcctcagcctcctgagtagctgagattaacaggaatgcgccaccatgcctggctaa-tttatattattagtagagatggggtttcaccatgtttggccagactggtcttgaactcctgacctcaggtgattcgcccgcctcggcctcccatagtgctg----ggattacaggcgtgaaccaccgcgcctggcctaacacAT
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113747181 407 - 132174527 AATGCTGTTATGATGGCCACATGAGAACTGTGGAATTGGGTAGATGCCTTCC-AAGCCAGGAAACCCATTTTATCTAATACAGCTAtctttattttattttat---------------------------ttatttattttgagacggagtcttgctctgtcacccaggctggagtgcagtggtgtgatcttggctcacagcagcctctgcctcccaggttccattggttctcctgcctcagcctcccaagtagttgggatttacaggcatgcaccaccatgcctggctaattttttatttttggtagaggtggggtttcatcatg-ttggccaggctcgtcttgaactcctgacctcaggtgattcacctgactcagcctcccaaagcgctgtaattgattacaggtgtgagccactgcacctggcATAATTCAG
i calJac3.chr10                  I 1334 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=2255.000000
s hg38.chr15_KI270850v1_alt          34117 2 +    430880 GT
s panTro4.chr15_GL392289_random      36714 2 -    187897 GT
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7580 2 -     28805 GT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108922693 2 - 162156779 GT
i papAnu2.chr7                   C 0 C 0
s calJac3.chr10                  113747588 2 - 132174527 GT
i calJac3.chr10                  C 0 C 0
s canFam3.chr3                    58214745 2 +  91889043 GC
i canFam3.chr3                   I 528 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=1259746.000000
s hg38.chr15_KI270850v1_alt          34119 753 +    430880 GTCTTTAATTGGACAAACGTGA-AAACCAACAAATACATTTGCAGCACTAGACATTTGGGGAATTGCCTTTCAGCAAATTGGCTGCTTCGCAGGTGGACCACTTAGGAGCGTCTGCAGAGGCAAGTGCCCTGTGGTGGCTGGAAGAGACAGGGGTTCTTTGTCTCAGGCAGGAAGTCCCAGGTGCACAGTCCAAGCTGGCGGGACCTGGAGCTGACTGGCCCTCAGCCACACCATCCTTGCCATAGCAGCCTCCCCTCCACTCCTGCTTGCCacagatggtgtcctcccttccagggctcttgcagtgttctaggcaagaag---gagagagGAAAGGGCTGA---------------------CTCCCA-GCGAGGGACTTGTGCCTTTTTCTCCTGAGCCAGGACTGTGTCCCAGACCCCCCTAGTTGCAAGGGAGCGGCAGTGGGGTGTGTTTTCAGCAGGTCCC--------ACTGCTGCCTTGAACAAAATCAGAC-TCTGTTGGTGAGGAAAGAGGGGGATGGATGTGGGACTGGCAGCTCAGG-GGAGGGACAACTTACTCTCGGGACCACGGGGCAGGGGGTGGAGCAGAGAAGGCAGAGCCACCAGCAGACGGGGTCCTGCAGCTGGGCCTCAACAGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGAACGTGGCTGTGCAAAGTCCCCAGGTTGGACAGTGGCAGAGAATGTAAAGGACTGGAGCAGTGCCAAGGCTGGTGTGGGGATGGAGAGCAGGGGCTGTCCATTGATGCCCCAT
s panTro4.chr15_GL392289_random      36716 756 -    187897 GTCTTTAATTGGACAAATGTGA-AAACCAACAAATACATTTGCAGCACTAGACATTTGGGGAATTGTCTTTCAGCAAATTGGCTGCTTTGCAGGTGGACCACTTAGGAGCGTCTGCAGAGGCAAGTGCCCTGTGGTGGCTGGAACAGACAGGGGTTCTTTGTCTCAGGCAGGAAGTCCCAGGTGCACAATCCAAGCTGGCGGGACCTGGAGCTGACTGGCCCTCAGCCACACCATCCTTGCCATAGCAGCCTCCCCTCCACTCCTGCTTGCCACAGATGGTGTCCTCCCTTCCAGGGCTCTTGCAGTGTTCTAGGCAAGAAGTAGGAGAGAGGAAAGGGCTGA---------------------CTCCCA-GCGAGGGACTTGGGCCTTTTTCTCCTGAGCCAGGACTGTGTCCCAGACCCCCCTAGTTGCAAGGGAGCGGCAGTGGGGTGTGTTTTCAGCAGGTCCC--------ACTGCTGCCTTGAATAAAATCAGAC-TCTGTTGGTGAGGAAAGAGGGGGATGGATGTGGGACTGGCAGCTCAGG-GGAGGGACAACTTACTCTCGGGACCACGGGGCAGGGGGTGGAGCAGAGAAGGCAGAGCCACCAGCAGATGGGGTCCTGCAGCTGGGCCTCAACAGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGAACGTGGCTGTGCAAAGTCCCCAGGTTGGACAGTGGCAGAGGATGTAAAGGACTGGAGCAGTGCCAAGGCTGGTGTGGGGATGGAGAGCAGGGGCTGTCCATTGATGCCCCAT
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7582 754 -     28805 GTCTTTAATTGGACAAACGTGA-AAACCAACAAATACATTTGCAGCACTAGACATTTGGGGAACTGTCCTTCAGCAAATTGGCTGCTTCGCAGTTGGACCTCTTGGGATCATCTGCAGAGGCAAGTGCCCCATGGTGGCTGGAACAGACAGGGGTTCTTTGTCTCAGGCAGGAAGTCCCAGGTGCACAGTCCAAGCTGGCGGGACCTGGAGCTGACTGGCCCTCAGCCACACCGTCCTTGCCATAGCAGCCTCCCCTCCACTCCTGCTTGCCACAGATGGTGTCCTCCCTTCCAGGGCTCTTGCAGTGTTCTGGGCAGGAAGAAGGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GTGAGGGGCTTGTGTCTTTTTCTCCCGAGCCAGGACTGTGTCCCAGACCCTCCTAGTTGCAAGGGAGCGGCAGTGGGGTGTGTTTTCAGCAGGTCCC--------ATTGCTGCCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAGGGGGACGGATGTGGGACTGGCAGCTCAGG-GGAGGGACAACTTG--CTGGGGACCACAGGGCAGGGGGTGGAGCAGGGAAGGGAGAGCCACCAGCAGAGGGGGTCCTGCAGCTGGGCTTCAACGGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGAGCGTGGCTGTGCAAAGTCCCCAGGGTGGGCAGTGGCAGAGGGTGTGAAGGACAGGAGCAGTGCCAAGGCTGGTGTGGGGATGGAGAGCAGGGGCTGCCCCTTGATGCCCCAT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61592994 752 + 171882078 gtcTTTAATTGGACAAACGTGA-AAAACAGCACATACATTTGCAGGATTAGACATTT-GGGAATTGTCTTTCAGCAAATTGGCTGCTTCGCAGGGGGACCACTTAGGAGTGTCTGCAGAGGCAAGTGCCCCATGGTGACTGGAACAGACAGGGGTTCTTTGTCTCAGGCAGGAAGTCCCAGGTGCACAGTCCAAGGTGGCAGGACCTGGAGCTGATTGGCCCTCAGTCACACCATCCTTGCCACAGCAGCCTCCCCT-CACTCCTGCTTGTCACAGATGCTGTCCTCCCTTCCAGGGCTCTTACCCTGTACCGGGCAGGAAGAAAGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GTGAGGGACTCGTGCCTTTTTCTCCCCAGCCAGGACTGTGTCCCAAACCCCCATAGTTGCAAGGGAGCGGCAGTGGGGTGTGTTTTCAGCTGGTCTC--------ATTGCT-CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAGGGGGACAGGTGTGGGACTGGCAGCTCAGG-GGAGGGACAACTTACTCTTTGGACCACAGGGT-GGGGATGGAGCTGAGAAGGCAGAGCCACCTGCAGACAGGGTCCTGCGGCTGGGCCTCAATAGGCAGTATGGGAGTGAGTGTCCAAGGTGAGGAGCATGGCCGTGCAAAGGCCCCAGGATGGGCAGTGGCAGATGGTGTGAAGGACAGGAGCAGTGCCAAGGTTGGTACAGGGGTGGAGAGCAGGGGCTGCCCCTTGTTGCCCAAT
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108922695 755 - 162156779 GTCTTTAATTGGACAAATGTGG-AAACCAACACATACATTTGCAGCACTAGACATTTGGGGAATTGTCTTTCAGCAAATTGGCTGCTTCGCAGGTGGACCACTTGGGAGTGTCTGCAGGGGCAAGTGCCCCGTGGTGGCTAGAACAGACAGGGGTTCTTTGTCTCAGGCAGGAAGTTCCAGATGCACAGTCCAAGCTGGTGGGATCTGAAGCTGACTGGCCCTCAGCCACACTGTCCTTGCCACAGCAGCCTCCCCTACACTCCTGCTTGTCACAGATGGTGTCCTCCCTTCCAGGGCTCTTACCGTGTACCGGGCAGGaagaaggagaggggaaagggctGA---------------------CTCCCA-GCAAGGGACTTGTGCCTTTTTCTCCCCAGCCAGGACTGTGTCCCAGACCCCT-TAGTTGCAAGGGAGCGGCAGTGGGGTGTGTTTTCAGCAGGTCCC--------ATTGCTGCCTTGAACAAAATCAGAA-TCTATTGGTGAGGAAAGAGGGGGATGGGTGTGGGACCGGCAGCTCAGG-GGAGGGACAACTTACTCTCAGGACCACGGGGCAGGGGGTGGAGCAGAGAAGACAGAGCCACCTGCAGAGGGGGTCTTGCGGCTGGGCCTCAACCGGCAGTATGGAAGTGAGTGTCTAAGGTGAGGAGCATGGCCGTGCAAAGGCCCCAGGGTGGGCAGTGGCAGATGGTGTGAAGGACAGGAGCAGTGCCAAGGCTAGTACAGGGGTGGAGAGCAGGGGCTGCCCCTTGATGCCCAAT
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1321081 752 +  24206276 gtcTTTAATTGGACAAACGTGA-AAAACAGCACATACATTTGCAGGATTAGACATTT-GGGAATTGTCTTTCAGCAAATTGGCTGCTTCACAGGGGGACCACTTAGGAGTGTCTGCAGAGGCAAGTGCCCCATGGTAGCTGGAACAGACAGGGGTTCTTTGCCTCAGGCAGGAAGTCCCAGGTGCACAGTCCAAGGTGGCAGGACCTGGAGCTGATTGGCCCTCAGCCACACCATCCTTGCCACAGCAGCCTCCCCT-CACTCCTGCTTGTCACAGATGCTGTCCTCCCTTCCAGGGCTCTTACCCTGTACCGGGCAGGAAAAAAGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GTGAGGGACTCGTGCCTTTTACTCCCCAGCCAGGACTGTGTCCCAAACCCCCATAGTTGCAAGGGAGCGGCAGTGGGGTGTGTTTTCAGCTGGTCTC--------ATTGCT-CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAGGGGGACAGGTGTGGGACTGGCAGCTCAGG-GGAGGGACAACTTACTCTTTGGACCACAGGGT-GGGGGTGGAGCTGAGAAGGCAGAGCCACCTGCAGACAGGGTCCTGTGGCTGGGCCTCAACAGGCAGTATGGGAGTGAGTGTCCAAGGTGAGGAGCATGGCCGTGCAAAGGCCCCAGGATGGGCAGTGGCAGATGGTGTGAAGGACAGGAGCAGTGCCAAGGTTGGTACAGGGGTGGAGAGCAGGGGCTGCCCCTTGTTGCCCAAT
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113747590 756 - 132174527 GTCTCTAAATAGACAAACGTGAGAAACCAACAAATACATTTGCAGCACGAGACATTT-GGGGATTGTCTTTCAGCAAATCGGCTGCCTCAAAGGTGGACCGTGTAGGAGTGTACGCAGAGGCAAGTGGCCCGCGGTGGCCAGGACAGACAGGGGTTC-TTGTCTAAGGCAGGAAGACCCAGGTGCACAGTCCAAGCTGGCGGGACCTGAAGCTGACTGTCCCTCAGCTGCAGCGTCCTTGCCACTGCAGCCCTCCCC----TCCTGCTTGTCACAGATGGCATCCTCCCTTCCAGGCCTCTTGCCATGTTCCGGGCAGAAGA---AGGAGGGGAAAGGGCTGAGGAGGAGGAGCTCATGTCCATTTCCCA-GCGAGGAGCTCCTGTCCATTTCTCCCCAGCCAGGACTGTGTCCCAGAGCCCC-TAGTTTCGAGGGGGTGGCCTCAGG--GTGTTTTCAGCAGGTCCCTTACTGTAGTTGTGACCTTGAGCAGTATCAGAA-TCTGTTGGTGAGGAA--AGGGGGACCGGTGTGGGACTGGCAGCTCAGG-GGAGGGACAGCTTACTCTTGCGACCCTGGG---------GGAGCAGAGAAAGCAGAGCCACCAGCAGAGGGGGTCCTGAGGCTGGGTCTCAGTAGGCA-TATGGAAGTGAGTTT---AAGTGAGGAGCGTGGCTGTGGAAAAGCCCCCGGGTGGGCAGTGGCAGAAGGTATGAAGGACAGGAGCAGTGCCAAGGCTAGTGTGGGTGCGGGGAGCGGGGCCTGCCCCTTGATGC---AT
i calJac3.chr10                  C 0 C 0
s canFam3.chr3                    58214747 587 +  91889043 ATCTCTAAATTTACACACGTGA-AAGA----AAACCTATTGGATGAACTGGACTCCGGGGAAATGGCCTTTCAGCAGAGTGGTGGCTTCACGGGTGGATGGGTTAGGAA---CTCGAGCTGCAAGTAGCC---------------AGCCAGCAGTC--------------AGAAGGCCCGGGGACAGAGGCCAGGCTGGCAGGAT----GGCCTGCGCTTCCGTAGGGACGTGGAACGTGTC----------TCCCT-CACACCCGT---CCACAGGG-------CCCCCTCCCAGCCTCTTG---TGGTCCAGGCAGGAAG-----AAGGGGCATGCGCTGG---------------------CTCCCAGGGGAGGGACTCGTGT---------------------------CCAGACGTCCCTCAATGCACGGGAACTACAATGGAGAGTGTTTTCAGCGGGGCCC--------ACGATTACCCTGCACAGAACCAGAATTCTGTTAGGGAAGGAGGAGCGGATAGGACATGGGA-GGGAAGCACGGGTGAAAGGAGAGCCTGTTCCTGG-------------------------------------------------GGGTCCTGCTGCTGG--------AGGCGGTGTGGGGGTGCATGG--AAGGTGAGGAG-ACAGCCATGCCAAGACCCAGAGGCAGGTGGGGGCAGAG--------GGATGAGAACGGTGACAAAGGTGGCATGGGGGT-------CGGGGCTGGAGAGGAATGTCCCAT
i canFam3.chr3                   C 0 I 1606
e mm10.chr9                       90191506 1512 + 124595110 I
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=84271.000000
s hg38.chr15_KI270850v1_alt          34872 50 +    430880 TTCTTGTCCAGACATTCTCTGATCCATTGGGAAGGGTGTGGATGGTGGGA
s panTro4.chr15_GL392289_random      37472 50 -    187897 TTCTTGTCCAGACATTCTCTGAGCCATTGGGAAGGGTGTGGATGGTGGGA
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8336 50 -     28805 TTCTTGTCCAGATGTTCTCTGAGCCATTGGGAACGGTGTGGATGGCGGGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61593746 50 + 171882078 TTCTTTTCCAGATATTCTCTGAGCCATTGGGAAGGGTGTGGACGGTGGGA
i macFas5.chr7                   C 0 I 11
s papAnu2.chr7                   108923450 50 - 162156779 TTCTTGTCCAGATGTTCTCTGAGCCATTGGGAAGGGTGTGGATGGTGGGA
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1321833 50 +  24206276 TTCTTTTCCAGATATTCTCTGAGCCATTGGGAAGGGTGTGGACGGTGGGA
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113748346 50 - 132174527 TTCTTCTCCAGATGTTCTCTGAGCCATTGTCAAGGGCATGGACAGTGGGG
i calJac3.chr10                  C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58215334 1606 +  91889043 I
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=443.000000
s hg38.chr15_KI270850v1_alt          34922 1 +    430880 C
s panTro4.chr15_GL392289_random      37522 1 -    187897 C
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8386 1 -     28805 T
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108923500 1 - 162156779 T
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1321883 1 +  24206276 C
i chlSab2.chr29                  C 0 I 9
s calJac3.chr10                  113748396 1 - 132174527 C
i calJac3.chr10                  C 0 I 9
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58215334 1606 +  91889043 I
e macFas5.chr7                    61593796 11 + 171882078 I
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=1446.000000
s hg38.chr15_KI270850v1_alt          34923 4 +    430880 CGTG
s panTro4.chr15_GL392289_random      37523 4 -    187897 CGTG
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8387 4 -     28805 GGTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108923501 4 - 162156779 GGTG
i papAnu2.chr7                   C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113748397 9 - 132174527 I
e canFam3.chr3                    58215334 1606 +  91889043 I
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=127054.000000
s hg38.chr15_KI270850v1_alt          34927 138 +    430880 T-----------GTCAGTGGTCCCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCTAGCCATGAGCTCTTCAGTGAGGCTGACTTCATCCTGCGCCACCTGGCCCCATGCCCTTCACCCGCCTCATCACCCAAGCCAATC
s panTro4.chr15_GL392289_random      37527 138 -    187897 T-----------GTCAGTGGCCCCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCATGAGCTCTTCAATGAGGCTGACTTCATCCTGCGCCACCTGGCCGCGTGCCCTTCACCCGCCTCATCACCCAAGCCAACC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8391 141 -     28805 TGTCGATGGCCCGTCGATGGCCCTTGGACACATTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCATGAGCTCTT--------CTGACTTCATCCCGCGCCACCTGGCCCCATGCCCTTCACCTGCCTCATCACCCAAGCCAGCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108923505 138 - 162156779 T-----------GTCGGTGGCCCCTGTACACACTGGGCCCTGAAGGCTCGGGCAGCTGCTCTTCCAGCCACGAGTTCTTCAATGAGGCTGACTTCATCCCAGGCCACCTGGCCCCATGCCTTTCACCCACCTCATCACCCAAGCCAGCC
i papAnu2.chr7                   C 0 C 0
s mm10.chr9                       90193018 138 + 124595110 T-----------GCCAGTATCCCATGTACATAGTGGACACAGGTGCCTCTGGAAGCGGCTCCTCCAGCCCCGAGCTCTTCAATGAGGTTGACTTCATCCCGAACCAGCTGGCCCCACGACCTTCCCCAGCATCCTCACCCAAGCCGGTC
i mm10.chr9                      I 1512 T 1531
s canFam3.chr3                    58216940 129 +  91889043 T-----------GTCCATGGGCCCTGGA---------CCCCGAAGGCTCGGGCAGTGGCTCCTCCAGCCGCGAGCTCTTCAATGAGATCGACTTCATCCCCCCCCGCCTGGCCCCACGCCCTCTGCTCGCCTCGTCCCCCGAGCCGGCC
i canFam3.chr3                   I 1606 T 1691
e calJac3.chr10                  113748397   9 - 132174527 I
e chlSab2.chr29                    1321884   9 +  24206276 I
e macFas5.chr7                    61593796  11 + 171882078 I
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=90978.000000
s hg38.chr15_KI270850v1_alt          35065 181 +    430880 CCAGGAAGGAGCAGAGGGAGCTGGTCTTTCATTCTCTTCCCAAGGCTGAAGCCCCAGACCCCGGTCACCCCTCACTCCAGCCTGGGCCACCCTGGACACTTATGGTCCTCCTCTTTGGGTCCCTGGATGTGGAAATAGGCCTCAGGTCACATTCAGTTTCCCTGAGGGGAAGGTGGCAGGA
s panTro4.chr15_GL392289_random      37665 181 -    187897 CCAGGAAGGAGCAGAGGGAGCTGGTCTTTCATTCTCTTCCCAAGGCTGAAGCCCCAGCCCCCGGTCACCCCTCACTCCAGCCTGGGCCACCCTGGACACTTATGGTCCTCCTCGTTGGGTCCCTGGCTGTGGAAATAGGCCTCAGGTCGCGTTCAGTTTCCCTGAGGGGAAGGTGGCAGGA
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8532 181 -     28805 CCAGGAAGGAGCACAGGGAGCCAGGCTTTCATTCTCCTCCCAAGGCTGAAGCCCCAGCCCCCGGTCACCCCTCACCCCAGCCCGGGCCAGCCTGGACACTTGTGGTCCTCCTCTTTGGGTCCCTGGATGTGGAAATAGGCCTCAGGTGACGCTCAGTTTCCCTGAGGGGAGGGTGGCAGGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108923643 181 - 162156779 CCGGGAAGGAGCAGAGGGAGCTGGGCTTTCATTCTCTTCTCAAGGCTGAAGCCCCAGCCCCTGGTCAcccctcaccccagcctgggccagcgTGGACACCTGTGGTCCTCCTCTTTGGGCCCCTGGATGTGGAAATAGGCCTCAGGGCAGGCTCAGTTTCCTTGAGAGGAGGGTGGCAGGA
i papAnu2.chr7                   C 0 C 0
e mm10.chr9                       90193156 1531 + 124595110 T
e calJac3.chr10                  113748397   9 - 132174527 I
e canFam3.chr3                    58217069 1691 +  91889043 T
e chlSab2.chr29                    1321884   9 +  24206276 I
e macFas5.chr7                    61593796  11 + 171882078 I
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=1500.000000
s hg38.chr15_KI270850v1_alt          35246 1 +    430880 G
s panTro4.chr15_GL392289_random      37846 1 -    187897 G
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8713 1 -     28805 G
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s papAnu2.chr7                   108923824 1 - 162156779 G
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1321893 1 +  24206276 G
i chlSab2.chr29                  I 9 C 0
s calJac3.chr10                  113748406 1 - 132174527 G
i calJac3.chr10                  I 9 C 0
e mm10.chr9                       90193156 1531 + 124595110 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e macFas5.chr7                    61593796 11 + 171882078 I
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=57559.000000
s hg38.chr15_KI270850v1_alt          35247 32 +    430880 CCACGGCTGGGTTTGCATGCTAGCAGCagctg
s panTro4.chr15_GL392289_random      37847 32 -    187897 CCACGGCTGGGTTTGCATGCTAGCAGCagctg
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8714 32 -     28805 CCACGGCTAGGTTTGCATGCTAGCAGCagctg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61593807 32 + 171882078 CCATGACTGGGTTTGCATGCTAGCAGCagctg
i macFas5.chr7                   I 11 C 0
s papAnu2.chr7                   108923825 32 - 162156779 CCATGGCTGGGTTTGCATGCTAGCAGCAGCTG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1321894 32 +  24206276 CCATGACTGGGTTTGCATGCtagtagcagctg
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113748407 32 - 132174527 TCATGGCTGGGTTTGCATGCTATCAGCaactg
i calJac3.chr10                  C 0 C 0
e mm10.chr9                       90193156 1531 + 124595110 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=378321.000000
s hg38.chr15_KI270850v1_alt          35279 216 +    430880 gcatggatcgagctcttaggatgtgccgggcacgggctgagcctgcacatgcaagaacacatgcagtcctccctcc---aggacatggagg-aggcaggattgttgctcccacttcacagaggaggacgctgaggttcagagaggccaaatgagctgccc-aggcatctcagctaggatgcagaggg-------tctgggcacc--caac---ccaCTAAACCTCCACACTC--T
s panTro4.chr15_GL392289_random      37879 216 -    187897 gcatggatcgagttcttaggatgtgccgggcacgggccgagcctgcacatgcaagaacacatgcagtcctccctcc---aggacatggagg-aggcaggattgtcgctcccacttcacagaggaggacgctgaggttcagagaggccaaatgagctgccc-aggcatctcagctaggttgcagagGG-------TCTGGGCACC--CAAC---CCACTAAACCTCCACACTC--T
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8746 218 -     28805 gcatggattgagctcttaggatgtgccgggcacgggccgagcctgcacatgcaagaatacacgcagtcccccctcc---agggcttggagg-aggcaggattgttgctcccactttacagaggaggacgctgaggttcagagaggccaaatgagctgccc-aggcatctcagctaggaagcagaggg-------tctgggcacc--caac---ccactaaacctccacactctgt
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61593839 216 + 171882078 gcatggatcgagctcttaggatgtgcggggcacaggccgagcctgcacatgcaagaacacacgcagtcctccctcc---agggcttggagg-aggcaggattgttgctcccacttcccagaggaggacgctgaggttcagagaggccaaatgagctgtcc-aggcatctcagttaggaagcagaggg-------tctgggcacc--caac---ccaCGAAACCTCCACACTC--T
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108923857 217 - 162156779 GCACGGATCGAGCTCTTAGGATGTGCTGGGCGTGGGCCGAGCCTGCACATGCAAGAACACACGCAGTCCTCCCTCC---AGGGCTTGGAGG-AGGCAGGATTGTTGCTCCCACTTCCCAGAGGAGGacgctgaggttcagagaggccaAATGAGTTGTCC-AGG-GTTTCAGCTAGGATGCAGAGGG-------TCGGGGCACCAAAAAC---CTGTTAATCCTCCACACTC--T
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1321926 198 +  24206276 gcatggatcgagctcttaggatgtgcggggcacaggccgagcctgcacatgcaagaacacacgcagtcctccctcc---agggcttggagg-aggcaggattgttgctcccacttcccagaggaggacgctgaggttcagagaggtcaaatgagctgtcc-aggcatctcagttaggaagcagagGG-------TCTG-----------------------CTTCCACACTC--T
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113748439 213 - 132174527 gcatggattgagctcttaggatgtgccgggcatgggctgagcccgcacatgcaaagccatgagcagtcctccctct---ggggctttgaggcagacaggattgtcactccaacttcacagaggaggacgctgagattcaaagaggccaaatgagctgccc-aggCATCTC----AGGAAGCAGAGGG-------TCTGGGGACC--TAAT---CCACTAAACCTCCACACTG--T
i calJac3.chr10                  C 0 C 0
s canFam3.chr3                    58215378 213 +  91889043 GCATGGACC---CTGCTAGAAGGGTCGGTGCTCAGGCTGGGATTGGATTTGCATGACCACATGGTGTTCTCCTTCCCCGGGGGCTTTCAggcaggtattactgttac---------------atagaccctgaggttcagagaggctgagggagctgcccaaggcgtcctagctagGATGCCAAGGGCTGCCCCCCCGCCCCCC--CGACTGTCCCCCAAGCCTGCACACTC--T
i canFam3.chr3                   T 1691 C 0
e mm10.chr9                       90193156 1531 + 124595110 T
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=1053876.000000
s hg38.chr15_KI270850v1_alt          35495 558 +    430880 GCCACCCCTCCAGGGGCAGTCAGAGGGGAAGCTACATA--GGAGAGGGGGT----GGGTGAGAACCAGGAGGACAGCAAGGAGG-----------------------------------------------------CGACGGTGGAGGTCTGCCTTCATCCTGACATGGGCAGTAAGGCATCCTGACATGGGCAGTAAGGCGCTGTTCTGGGAGGGTTCTGGCAGAGAGGG--------TGTCTTTGGGT---------CTTGGGCGGTGGGCACC-TGGGTGCCAGTCCCAGGCTGAA--CGCC-ATGGCCCCTAGGTGTGCAGAGGCAGAGTGTGTACTGCTCGGAGCGGCAGGCAGGGCCCGTGGACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGACTGCCAGAGGAAGTGCAGCCAGCAGCCCTGCCCTGCCAGGTGAGCCCGCCC---CCA-TCCCC-TACCA-ACTCCCCACCCCCAGGCATCCTGGGTCTGCCACAGGCCCCTACATCTG-GGTCCCCAGAGGCCCCAGGGAGGAGCAGAGGGAGCCGGGCTTTCAT-TCTCTTCCCAAGGCTGAAGCCCCAAC--------------CCCCGGTCACCTCTCACCC----------------CAGCCTGGGCCAGCCT-GGACACCTATGGT
s panTro4.chr15_GL392289_random      38095 558 -    187897 GCCACCCCTCCAGGGGCAGTCAGAGGGGAAGCTACATA--GGAGAGGGGGT----GGGTGAGAACCAGGAGGACAGCAAGGAGG-----------------------------------------------------TGACGGTGGAGGTCTGCCTTCATCCTGACATGGGCAGTAAGGCATCCTGACATGGGCAGTAAGGCGCTGTTCTGGGAGGGTTCTGGCAGAGAGGG--------TGTCTTTGGGT---------CTTGGGCGGTGGGCACC-TGGGTGCCAGTCCCAGGCTGAG--CGCC-ATGGCCCCTAGGTGTGCAGAGGCAGAGTGTGTACTGCTCGGAGCGGCAGGCAGGGCCCGTGGACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGACTGCCAGAGGAAGTGCAGCCAGCAGCCCTGCCCTGCCAGGTGAGCCCGCCC---CCA-TCCCC-CACCA-ACTCCCCACCCCCAGGCATCCTGGGTCTGCCACAGGCCCCTACATCTG-GGTCCCCGGAGGCCCTGGGGAGGAGCAGAGGGAGCCGGGCTTTCAT-TCTCTTCCCAAGGCTGAAGCCCCAAC--------------CCCCGGTCACCCCTCACCC----------------CAGCCTGGGCCAGCCT-GGACACGTATGGT
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8964 536 -     28805 gcCACCCCTCCAGGGGCAGTCAGAGGGGAGGCTACATA--GGAGAGGGGGT----GGGTGAGAACCAGGAGGACAGCGAGGAGG-----------------------------------------------------CGACGGTGGAGGTCTGCCTT----------------------CATCCTGACATGGGCAGTAAGGCGCTGTTCTGGGAGGGTTCTGGCAGAGACGG--------TGTCTTTGGGT---------CTTGGGCGGTGGGCACC-TGGGTGCCAGTCCCAGGCTGAG--CCCC-ATGGCCCCTAGGTGTGCAGAGGCAGAGTGTGTACTGCTCGGAGCAGCAGGCAGGGCCCGTGGACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGACCGCCAGAGGAAGTGCAGCGAGCAGCCGTGCCCTGCCAGGTGAGCCCGCCC---CCA-TCCCC-CACCA-ACTCCCCACCCCTAGGCATCCTGGGTCTGCCACAGGCCCCTGCATCTG-GGTCCCTGGAGGCTCCGGGGAGGAGCAGAGGGAGCCGGGCTCTCAT-TCTCTTCCCAAAGCTGAAGCCCCAAC--------------CCCGGGTCACCCCTCACCC----------------CAGCCTAGGCCAGCCC-GGATACCTGTGGt
i nomLeu3.chr6_GL398151_2_random C 0 I 153
s macFas5.chr7                    61594055 529 + 171882078 GCCACCCGTCCAGGGGCAGTCAGAGGGGAGGCTACATA--GGAGAGGGTGT----GAGTGAGAACCAGGAGGACAAGAAGAAG------------------------------------------------------CGACGGTGGAGGTCTGCCTT----------------------CATCCTGACATGGGCAGTGAGGCG-----CTGGGAGGG-TCTGGCAGAAAGGG--------TGTCTTTGGGT---------CTTGGGTGGTGGGCACC-TGGGTGCCAGTCCCAGGCTGAG--TCCC-ATGGACCCTAGCTGTGTAGAGGCAGAGTGTGTACTGCTTAGAGTGGCAGGCAGGGCCCGTGGACGGAGAGCACTCTGCCCCCCAGGGCTGGCCCGATGACTGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCCGCCC---CCACTGTCC-CGCCA-ACTTCCCACCCCCAGGTGTCCTG-GTCTGCCACAGGCCCCTACATCTG-GGTCCCCAGAGGCCCTGGGGAGGAGCAGAGGGAGCTGGGCTTTCAT-TCTCTTCCCAAAGCTGAAGCCCCAGC--------------CCCCAGTCACCCCTCACCC----------------CAGCCTGGGCCAGCCT-GGACACCTGTGGT
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108924074 590 - 162156779 GCCACCCCTCCAGGGGCAGCCAGAGGGGAAGCTACATAAGAGAGAGGGGGT----GAGTGAGAACCGGAACagcgaggaggtggaggtggaggtccACCTTCCCTCCCAGAACAGTGCCTTACTGCCCATGTCAGGCTGAAGGTGGAGGTCTGCCTT----------------------CATCCTCACATGGGCAGTAAGGTGCTGTTCTGGGAGGG-TCTGGCAGAAAGGG--------TGTCTTTGGGT---------CTTGGGCGGTGACCACC-TGGGTGCCAGTCCCAGGCTAAG--CCCC-ATGGCCCCCAGGTGTGCAGAGGCAGAGTGTGTACTGTTCGGAGCGGCAGACAGGGCCCGTGGACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGACCGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCCA-CC---CCACTCCCC-CGCCA-ACTCCCCACCCCTAGGTGTCCTGAGTCTGCCACAGGCCCCTACATCTG-GGTCCCCAGAGGCCCTGGGGAGGAGCAGAGGGAGCtaggctttcat-tttcttttcaaggCTGAAGCCCCAGC--------------CCCCGGTCACCCCTCACCC----------------CAGCCTCGGCCAGCCT-GGACACCTGTGGT
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1322124 527 +  24206276 GCCACCCGTCCAGGGGCAGTCAGAGGGGAGGCTACATA--GGAGAGGGTGT----GAGTGAGAACCAGGAGGACAGCAAGGAGG-----------------------------------------------------CGATGGTGGAGGTCTGCCTT----------------------CATCCTGACATGGGCAGTGAGGCG-----CTGGGAGGG-TCTGGCAGAAAGGG--------TGTCTTTGGGT---------CTTGGGTGGTGGGCACC-TGGGTGTCAGTCCCAGGCTGAG--TCCC-ATGGCCCCTAGGTGTGTAGAGGC--AGTGTGTACTGCTTAGAGTGGCAGGCAGGGCCCGTGGACGGAGAGCACTCTGCCCCCCGGGGCTGGCCCAATGACCGCCAGAGGAAGTGCAGCTAGCAGCCCTGCCCTGCCAGGTGAGCCCGCCC---CCACTGTCC-CACCA-ACTTCCCACCCCCAGGCGTCCTG-GTCTGCCACAGCCCTCTACATCTG-GGTCCCCAGAGGCCCTGGGGAGGAGCAGAGGGAGCCGGGCTTTCAT-TTTCTTCCCAAAGCTGAAGCCCCAGC--------------CCCCAGTCACCCCTCACCC----------------CAGCCTGGGCCAG-CT-GGACACCTGTGGT
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113748652 525 - 132174527 GCCACCTCTCCAGGGACAGTCAGA-GGGAGGCTATGTA--GGAGAGGGAG-----------------GGTGGACAGCAAGGAAGAGG--------------------------------------------------CAGTGGTGGAGGTTTGCCTT----------------------CATCCTGACATGGGCAGTGAGGTGCTGTTCTGGGAGGGTTCTGGCAGAAATGG--------TGTCTTTGGGT---------CTTGGGCTGTGGGCACC-TGGGTGCCAGGCCCAGGCTGAG--CCCC-ACGGCCCCTAGGTGTGCAGAGGCAGAGTGTGTACTGCTTGGAGCAGCAGGCAGGGCCTGTGGATGAGGGGCACTGTGACCCCCTGGGCCAGCCCGATGACCGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAG-CCGCCC---CCACTCCCC-TGCCA-ACTCCCCACCCCCAGGTGGCCTGGGTCTGCCATAGGCCCCTACTTCTG-GG-CCCCAGAGGCCCCAGGGAGGAGCACAGGCAGCCAGGTTTTCACGGATCTTTCCAAGGCTGAAGCCCCAGC--------------TCCCGGTCACCCCTTACTC----------------CAGCCTGGGCCAGCCT-GGACACCTGTGTT
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90191625 506 + 124595110 GCCACCACT-AAGAAGCAGCAAGGTGGGCCACC-TACA--GTATAGGGTGTCACGGAGGGAAGGCTGGGAGGACAG--AGGAGG-----------------------------------------------------CTA---TGGAGGCCTGCCTT----------------------CACCCTGACAGAGGCAGTGGAACCCTGTTTTGTGAGGTCTCT-GCAGAGAGGT--------TGTGTGTATGT---------CTCTTG----GGGCATT-CTGGTGCCGGGCCCAGGCTGAATTCCCC-GTGGCTTCCAGGCGTGCAGAGGCAGAGCTTATACTGCATGGAGAGGCAGGCTGGGGTTGTTGCTGAGGAATACTGTAACACTCTAAATCGGCCCGATGAACGCCAGAGAAAATGCAGTGAGGAGCCCTGTCCCCCCAGGTGAGCTTACTG-------TCCCC-AACCAGACCTCCAATTCCTAGGCATCCTG-------------CTCCTGCCTCTGCAGACCCTGGTAGCTC-----AGGAGAAGAGAAAGT--GGCT------TCTTTTCCCAAGTCCATGGACCTAGCTTGTTTCTGGAGTGCACTGGGCACCCCATA----------------------------CCAGCCT-AGATGCCCCTGAT
i mm10.chr9                      T 1531 I 2
s canFam3.chr3                    58215591 500 +  91889043 -GCTCCCATCCAGGGGCAG------------------------------------AGGCAAAGGCTGGGAGGACAGTGAGAAGG-----------------------------------------------------------------------------------------------------------AGTGATGAGGCCTTGCTCTGAGAGGC-CCTAGCAGAGCGGGTGTGGCCTTGTCTTCAGGCTCAGGGCAGCTTGGGCAGGGGGCACCGTAGGGGCCAGGCCCAGGCTGAG--CCCCTGTGATCCCCAGGTATGCAGAGGCAGAGCGTGCACTGCACTGAGCAACAGGCAGGGCCTGTGGATGAGCGACACTGTGACCCCCTGAGCCGGCCTGATGACCGCCAGAGGAAGTGCAGTGAGGAGCCCTGCCCTGCCCGGTGAGCCCACCCTGACCACTGCCTGCACAG-GCTCCTGACTCCCCGGT-CCCTGGCCTTGCTGCAGAGCCC-ACATCTG-GG--------GGCCTGTGAGAGGAGCAGAGGGAGCACGGCCTGG---CCTCTGTACAAGGCTGAAG-CCCAGA--------------CCCTGGTTCTTCCTCCCCCCCCTGCCCCGCCCCGGCAGCCAGCACCAGCCTAAGACATGCCTGGT
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=1240.000000
s hg38.chr15_KI270850v1_alt          36053 4 +    430880 --CCTC
s panTro4.chr15_GL392289_random      38653 4 -    187897 --CCTC
i panTro4.chr15_GL392289_random  C 0 C 0
s macFas5.chr7                    61594584 4 + 171882078 --CCTC
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108924664 4 - 162156779 --CTTC
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1322651 4 +  24206276 --CCTC
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113749177 4 - 132174527 --CCTC
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90192133 3 + 124595110 --CTT-
i mm10.chr9                      I 2 C 0
s canFam3.chr3                    58216091 4 +  91889043 CACC--
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112811653 3213 - 170124641 I
e nomLeu3.chr6_GL398151_2_random      9500 153 -     28805 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=5203315.000000
s hg38.chr15_KI270850v1_alt          36057 2372 +    430880 -CTCTTTGGGTCCCTGGATGTGGAAATAGGCCTCAG-----------------------------------------------------------------GTCATGCTCAGTTTCCCTGAGGGGAAGG----TGGCAGGAGTGGA-GGGGCTGTGCCTTGTCACCAGACTTTGAGGGCAGGACACTTACCTGAG-CTTGGAGCTCTGGAG--AATCATCCACTGGCTTCTG-----GCACTGCCCAAACCCCGAGGGCCTGGAAACC----CAGCCTGGCCCTCCCTGCTGGTGAGCC-TGTCAATGCCACCTGTCTGATGCCATACTGATGACACCTGTGTGCCCTCAGCAGGTGGTGGGCAGGTGAGTGGCAGCTGTGCTCCAGCTCCTGCGGGCCTGGGGGCCTCTCCTGCCAGGCTGTGCTCTGCATCCGCAGCGTGGGGCTGGATGAGCAGAGCGCCCTGAAGCCACCCGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCCTTGCAACCACCATGTGCCCTGTCCGGCCACGTAGGCTGTGGGGAACTGGTCTCAGGTGAGTGT-GGGA-TGGGAAGGTGCCCGCCTC--CAGCCCCACCCTTGGTCTTCAGCTACAGGGAG--GCAGACAGCCTTCCTGGAGACCT-------------TGTGGGTGGGAGGGAACCT---GG-GCATTCCAGGGTCCAGCCCCTGACTCTAAAGCCTCAGGGATCAGGAAGCCCCTGGCAAG-CATGGCCAC-AGTCATGGCCTTGAGCTGGGAAGGGCCAGAGAGGGCTGGCTGGGGTC-----------------TCTGCCACTCTGACATCAGGCAGTGGACAGGTTACCCAGCCTTGCCCCAGCGTCCCCTGGCAGCCTGCCTCCCAGGCTAAGCCCCTCACCCTGGCTTCCCCTGCAGTGCTCAGTGACATATGAGGAAGGGACTCAGCACCGAAATGTCCTCTGCATCAGTGACACCGGTGTC-------CCCTGTGACGAGGCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACCCTGTTGGTGGCCCCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCGCCTCATCACCCAAGCCAGGCACCATGGGCAACGCCATTGAGGAGGAGGCTCCAAAGCTGGACCTGCCGGGGCCCGTGTTTGTGGACGACTTCTACTACGACTACAATTTCATCAGCTTCCACGAGGATCTGTCCTTACGGGCCTTCTGAGGAGCCTGATCTAGACCTGGCGGGGACAGGGGATCGGACGCCCCCACCACACAGCCGTCCTGCTGCGCCCTCCACGGGTAGCCCTGTGCCTGCCACAGAGCCTCCTGCAGCCAAGGAGGAAGGGGCAACGGGACCTTGGTCCCCGAGCCCTTGGCCTAGCCAGGCCGGCCGCTCCCCACCCCCACCCTCAGAGCAGACCCCTGGGAACCCTTTGATCAATTTCCTGCCTGAGGAAGACACCCCCATAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCTGGCCCAGGGTTTCCACTGATGGCCTGCAGACGCCTGCCGCCCCTGAGAGCCAAAATGATTTCCCAGTTGGCAAGGACAGCCAGAGCCAGCTGCCCTCTCCATGGCAGGACAGGACCAACGAGGTTTTCAA--ATGATGAGGGACCCAAGGGCTGCGGAGCACCCCACCTGCCCCCGAGACCCAGCCCCACGCTGCCCACTTTGTACCCG---------------GTCAGCAGCACCCACTCCTCTCCTAGTCCTGACGTGGCGGAGCTGTGGACAGGAGGGACAGTAGCCTGGGAGTCA-----------------------------------------------------GCTCTGGAGGGTGGCCTGGGGCCTGTGGACAGTGAACTGTGGCCCACTGTTAGGGTG-GCTTCTCTCCCTCCTCCTC----CCATAGCCCCTTTGCCAGAGATGAAGGGCAAGGACAGTCCCCTGCAGCCGGGGACTTCCACCTTCCCAACCCCAGGACCAGGCTCATGGGACCTGCAGACTGTGGCAGTGTGGGGGACCTTCCTCCCCACAACCCTGACTGGCCTCGGGCACAC------GCCTGAGCCTGCCCTGAACCCAGGACCCAAGGGTCAGCCTGAGTCCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTGCTGTCCATGCCAGCTTGGGACAGCCCCGCCAACAGCCACAGAGCCCCTGAGACCCAGCCACTGCCTCCCAGCCTGGCTGAAGCGGGGCCCCCCACGGACCCGTTGGTTGTCAGGAACGCCGGCTGACAAGTGGGAAACTGGAGCGAGGCAAGTGGTGTGG-GCTGGGCGGGCAGGGA--GTTTGCGCAGGACCTTGGTGACT--ATTTCCTCATCTGAAAATGAGCAGAG-------TGGGACGCAGGCGCCGTCTGTCT----------------CGCCTT---CCTTGGGGCGGGGGTTC----------CCAGGATTAG---------GGGAATGAGGGGA-CCTGGGGC
s panTro4.chr15_GL392289_random      38657 2369 -    187897 -CTCTTGGGGTCCCTGGATGTGGAAATAGGCCTCAG-----------------------------------------------------------------GTCATGCTCAGTTTCCCTGAGGGGAGGG----TGGCAGGAGTGGA-GGGGCTGTGCCTTGTCACCAGACTTTGAGGGCAGGACACTTACCTGAG-CTTGGAGCTCTGGAG--AATCATCCACTGGCTTCTG-----GCACTGTCCAAACCCCGAGGTCCTGGAAACC----CAGCCTGGCCCTCCCTGCTGGTGAGCC-TGCCAATGCCACCTGTCTGATGCCATACTGATGAGACCTGTGTGCCCTCAGCAGGTGGTGGGCAGGTGAGTGGCAGCTGTGCTCCAGCTCCTGCGGGCCTGGGGGCCTCTCCTGCCAGGCTGTGCTCTGCATCTGCAGCGTGGGGCTGGATGAGCAGAGCGCCCTGAAGCCACCCGCCTGTGAACACCTTCCCTGGCCCCCTACTGAAACCCCTTGCAACCACCACGTGCCCTGTCCAGCCACCTAGGCTGTGGGGAACTGGTCTCAGGTGAGTGT-GGGA-TGGGAGGGGGCCCGCCTC--CAGCTCCACCCTTGGTCTTCAGCTACGGGGAG--GCAGACAGCCTTCCTGGAGACCT-------------TGTGGGTGGGAGGGAACCT---GG-GCATTCCAGGGTCCAGCCCCTGACTCTAAAGCCTCAGGGATCAGGAAGCCCCTGGCAAG-CATGGCCAC-AGTCATGGCCTTGAGCTGGGAAGGGCCAGAGAGGGCTGGCTGGGGTC-----------------TCTGCCACTCTGACATCAGGCAGTGGACAGGTTACCCAGCCTTGCCCCAGTGTCCCCTGGCAGCCTGCCTCCCAGGCTAAGCCCCTCACCCTGGCTTCCCC-GCAGTGCTCAGTGACATCTGAGGAAGGGACTCAGCACCGAAATGTCCTCTGCATCAGTGACACCGGTGTC-------CCCTGTGACGAGGCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACCCTGTCAGTGGCCCCTGGACACACTGGGCCCTGAAGGCTGAGGCAGCGGCTCCTCCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCGCCTCATCACCCAAGCCAGGCACCATGGGCAACGCCATTGAGGAGGAGGCTCCAGAGCTGGACCTGCCGGGGCCCGTGTTTATGGACGACTTCTACTACGACTACAATTTCATCAGCTTCCACGAGGATCTGTCCT-ACGGGCCCTCTGAGGAGCCCAATCTAGACCTGGCGGGGACAGGGGATCGGACGCCCCCACCACATAGCCGTCCTGCTGCGCCCTCCACGGGTAGCCCCGTGCCTGCCACAGAGCCTCCTGCAGCCAAGGAGGAAGGGGCACCGGGACCTTGGTCCCCGAGCCCTTGGCCTAGCCAGGCCGGCCGCTCCCCACCCCCACCCTCAGAGCAGACCCCTGGGAACCCTTTGATCAATTTCCTGCCTGAGGAAGACACCCCCATAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCTGGCCCAGGGTTTCCACTGATGGCCTGCAGACGCCTGCCGCCCCTGAGAGCCAAAATGATTTCCCAGTTGGCAAGGACAGCCAGAGCCAGCTGCCCTCTCCATGGCAGGACAGGACCAATGAGGTTTTCAA--ATGATGAGGAACCCGAGGGCTGCGGAGCACCCCACCTGCCCCCGAGACCCAGCCCCACGCTGCCCACTTTGTACCCG---------------GTCAGCAGCACCCACTCCTCTCC-AGTCCTGACGTGGCGGAGCTGTGGACAGGAGGGACAGTAGCCTGGGAGTCA-----------------------------------------------------GCTCTGGAGGGTGGCCTGGGGCCTGTGGATAGTGAACTGTGGCCCACTGTTGGGGTG-GCTTCTCTCCCTCCTCCTC----CCATAGCCCCTCTGCCAGAGATGAAGGGCAAGGACAGTCCCCTGGAGCCGGGGACTCCCACCTTCCCAACCCCAGGACCAGGCTTATGGGACCTTCAGACTGTGGCAGTGTGGGGGACCTTCCTCCCCACAACCCTGACTGGCCTCGGGCACAC------GCCTGAGCCTGCCCTGAACCCAGGACCCAAGGGTCAGCCTGAGTCTCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTGCTGTCCACGCCAGCTTGGGACAGCCCTGCCAACAGCCACAGAGTCCCTGAGACCCAGCCGCTGGCTCCCAGCCTGGCTGAAGCGGGGCCCCCCGCGGACCCGTTGGTTGTCAGGAATGCCAGCTGACAAGTGGGAAACTGGAGCGAGGCAAGTGGTGTGG-GCTGGGCGGGCAGGGA--GTTTGCGCGGGACCTTGGTGGCT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAGGCGCCGTCTGTCT----------------CGCCTT---CCTTGGGGCGGGGGTTC----------CCAGGATTAG---------GGGAATGAGGGGA-CCTGGGGC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      9653 2376 -     28805 -ctcaTTGGGTCCCTGGATGTGGAAATACGCCTCAG-----------------------------------------------------------------GTCGTGCTCAGTTTCCCTGAGGGGAGGG----TGGCAGGAGCGGA-GGGACTGTGCCATGTCACCAGGCTTTGAGGGTATGAAACTTACCTGGG-CTTGGAGCTCTGGAG--AATCAACCACTGGCCTCAGTCCCAGCTCTACCCAAACCCCAAGGGCCTGGAAGCC----CAGCCTGGCCCTCCCTGCTGGTGAGCC-TGC--AGGCCACCTGTCTGATGCCACACTGATGCCACCTGTGTGCCCTCACCAGGTGGTGGGCAGGTGAGTGGCAGCTGTGCTCCAGCTCCTGCGGATCTGGGGGCCTCTCCCGCCGGGCTGTGCTCTGCATCCGCAGCGTGGGGCTGGATGAGCAGAGTGCCTTGGAGCCACCCGCCTGTGAACACCTGCCCCAGCCCCCTACTGAAACCCCTTGCAACCGCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTGT-GGGA-TGGGAGGGGGCCCACCTC--CAGCTCCACCCTTGGTCTTCGGCTACAGGAAG--GCAGACAGCCTTCCTGGAGCCCT-------------TGTGGGTGGGAGAGAGCCT---GG-GCATTCCAGGGTCTAGCCCCTGACTCTAAAGCCTCAGGGATCAGGAAGCCCCTGGCAAG-TGTGGCCAC-AGCCGTGGCCTTGAGCTGGGCAGGGCCAGAGAGGGCTGGCTGGGGAC-----------------TCTGCCACTCTGACATCGGGCAGTGGACAGGTTACCCAGCCTTGCCCCAGCGTCCCCTGGCAGCCTGCCTCCCAGCCTAAGCCCCTCACCCTGGCTTCCCCTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAACACCGAAATGTCCTCTGCATCAATGACACTGGTGTC-------CCCTGTGACGAGGCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACTCTGTCGGTGGTCCCTGGGCACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCACGCCACCTGGCCCCACACCCTTCACCCGCCTCATCACCCAAGCCAGGCACCATGGGCAACGCCATTGAGGAGGAGACCCCAGAGCTGGACCTGCCGGGGCCCGTGTTTGTGGATGACTTCTACTACGACTACAATTTCATCAACTTCCACGAGGATCTGTCCT-ACGGGCCCTCTGAGGAGCCCAATCTAGACCTGGCGGGGACAGGGGATCGGACGCCCCCACCGCATAGCCGTTCTGCTGTGCCCTCCACGGGTAGCCCCGTGCCTGCCACAGAGCCTCCCGCAGCCAAGGAGGAGGGGGCACCGGGACCTTGGTCCCCTAGCCCTTGGCCCAGCCAGGCCAGCCGCTCCCCACCCCCACCCTCAGAGCAGACCCCTGGGAACCCTTTGATCAATTTCCTGCCTGAGGAAGATGCCCCCATAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCCGGCCCAGGGTTTCCACTGATGGCCTGCAGACGCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTGGCAAGGACAGCCAGAGCCAGCTGCCCCCTCCATGGCGGGACAGGACCAAAGAGGTTTTCAAGGATGATGAGGAACCTGAGGGCCGCGGAGCACCCCACCTGCCCCCAAGACCCAACTCCACGCTGCCCACTTTGTCCCCG---------------GTCGGCAGCAGCCACTCCTCTCCTAGTCCTGACGTGGCGGAGCTGTGGACAGGAGGGAGAGTCGCCCGGAAGCCA-----------------------------------------------------GctctggagggtggcctagggcctgtggacagtgaactgtggCCCACTGTTGGGGTG-GCTTCTCCCCCTCCTCCTC----CCATAGCCCCTCTTCCAGAGATGAAGGGCAGGGACGGTCCCCTGGAGCTGGGGACTCCCACCTTCCCAACCCTAGGACCAGGCTCATGGGACCTGCAGACTGTGGCAGTGTGGGGGACCTTCCTCCCCACAATGCCGACTGGCCTCGGGCACAC------GCCTGAGCCTGCCCTGAACCCAGGACCCAAGGGCCAGTCTGAGTCCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTGCTGTCCACGCCAGCTTGGGACAGCTCCACCAACAGCCACAGAGCCCCTGAGACCCAGCCGCTGGCTCCCAGCCTGGCTGAAGTGGGGCCCCCCACGGACCCATTGGTTGTCAGGAATGCCAGCTGGCAAGCGGGAAACTGGAGCGAGGCAAGTGGTGTGG-GCTGGGCGGGCAGGGA--GTTTGTGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAGGTGCCATCTGTCT----------------AGCCTC---TCCTGGGGCAGGGGTTC----------CCAGGATT-G---------GGGGATGAGGGGACCCCGGAGC
i nomLeu3.chr6_GL398151_2_random I 153 C 0
s macFas5.chr7                    61594588 2375 + 171882078 -CTCTTTGGGTCCCTGGAT-TTGAAGTAGGCCTCAG-----------------------------------------------------------------GTCACACTCAGTTTCCCTGAGGGGAGGG----TGGCAGGAGCGGA-GGGGCTGTGCCATGTCACCAAGCTTTGAGGGCAGGACACTTAACTGGG-CTTAGAGCTCTGGAG--AATCATCCACTGGCCTCAGTCCCAGCTCTGCCCAAGCCCTGAGGGCCTGGAAGCC----CAGCCTGGCCCTCCCTGCTGGTGAGCC-TGCTGATGCCACTCATCTGATGCCACGGTGATGCCACCCATGTGCCCTCACCAGGTGGTGGGCAGGTGAGTGGCAGCTGTGCTCCAGCTCCTGTGGGCCTGGGGACCTCTCCGGCCAGGCCGGGCTCTGCATCTGCACTGTGGGGCTGGATGAGCAGAGTGCCCTGGAGCCACCCGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCATTGAAACTGCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTGAGGTGAGTGT-GGGA-TAGGAGGGGGCCCGCCTC--CAGCTCCACCCTTGGTCTTTGGCTACAGGTAG--GCAGACAGCCTTCCTGGAGCCCT-------------CGTGGGTGGGAGGGAGCCT---GG-GCATTCCAGGGTCCAGCCCCTGACTCTAAAGCCTCAGGGATCAGGAAGCCCCTGGCAAG-CATGTCCAC-AGCCATGGCCTTGAGCTGGGC----------AGGGCTGGCTGGGGTC-----------------TCTGCCACCCTGACATAGGGCAGTTGACAGGTTACCCAGCCATGCCCCAGCGTCCCCTGGCACCCTGCCTCCCAGCCTAAGCCCCTCACCCTGGCTTCCCCTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAGAACCAAAATGTCCTCTGCACCAATGACACCGGTGTCCCGGTGTCCCTTTGTCGAGGCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACCCTTTAGGTGGCCCCCGGACACACTGGGCCCTGAAGGCTCAGGCAGTGGCTCCTCCAGCCATGAGCTCTTCAATGAGGCTAACTTCATCCTGCACCACCTGGCCCCAGGCCCTTCACCTACCTCATCACTCAAGCCAACCACCATGGGCAACGCCATTGAGGAGGAGGCCCTAGAGCTGGACCTGCCAGGGCCCATGTTTGTGGACGACTTCTACTATGACTACAATTTCATCAACTTCCACAAGGATCTGTCCT-ATGGGCCCTTTGAGGAGCCCGATCTAGACCTGGAGTGGACAGGGGATCGGACTCCCTGACCACACAGCCATCCTGCTGTGCCTTCCATGTGTAGCCCCGTGCTTACCACAGAGCCTCCTGCAGCCAAGGAGGAGGGGGCACCGGGATCTTGGTCCCCTAGCCCTTGGCCCAGCCAGGCCAGCTGCTCCCCACCACCACCCTCAGAGCAGACCCCTGGGAACCCTTTGATCAATTTCCTGCCTGAGGAAGAAGGTCCCATAGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCTGGCCCAGGGTTTCCATTGATGGCCTGCAGATGCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTAGCAAGGACAGCCCGAGCCAGCTGCCTCCTCCATGGAGGGACAGGACCAACGAGGTTTTCAAGGATGATGAGGAACCTGAGGGCCGCAGAGCACCCCACCTGCCTCCAAGACCCAGCCCCACACTGCCCCCTTTGTTCCTG---------------GTCGGCAGCACCCACTCTTCTCCTAGTCCTGACGTGACAGAGCTGTGGACAGGAGGGACTGTGGCCTGGGAGCCA-----------------------------------------------------GCTCTGGAGGGTGGCCTGGGGCCTGTGGAGAGTGAACTGTGGCCCACTGTTGGGGTG-GCTCCTCCCCCTCCCTCCC----CCATAGCCCCTCTGCCAGAGATGAAGGGCAGGGATGGCCCCCTGGAGCCGAGGACTCCCACCTTCCCAACCCCAGGACCAGGATCATGGGACCTGCAGACTGTGGCAGTGTGGGGGACCTTCCTTCCCACAACCCTGACTGGCCTCAGGCACAC------GCCTGAGCCTGCCCTGAACCCAGGACCCAAGGGCCAGCCTGAGTCCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTACTGTCCACGCCCGCTTGGGACAGCCCCGCCAACAGCCACAGAAACCCTGAGACCCAGCCGCTGGCTCCCAGCCTGGCTGAAGCTGTCTCCCCCGCGGACCCGTTGGCTGTCAGGAACGCTAGCTGGCAAGCAGGAAACTGGAGCCAGGCAAGTGGTGTGG-GCTGGGTGGGCTGGGA--GTTTGCGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAGGTGCCATCTGTCT----------------TGCCTC---TCTTGGGGCAGGAGTTC----------CCAGGATTAG---------GGGAATGAGGGGATCTCGGGGC
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108924668 2410 - 162156779 -CTCTTTGGGTCCCTGGATGGGGAAATAGGCCTCAGATCAGTTTCCTGAGGGAAGTTTCCCTGAGGGGAGGGTGGCAGGAACAGAGGGGCTGTGCTGTGTCATCAGGCTCAGTTTCCCTGAGGGGAGGG----TGGCAGGAATGGA-GGAGCTGTGCCATGTCACCAGGCTTTGAGGGCAGGACACTTACGTGGG-CTTGGAGCTCTGGAG--AATCATCCACTGGcctcagtcccagctctgcccaaACCCTGAGGGCCTGgaagcc----cagcctggccctccCTGCTGG-------------TGCCATCCATCTGATGCCATGCTGATGCCACCTGTGTGCCCTCGCCAGGTGGTGGGCAGGTGAGTGGCAGCTGTGCTCCAGCTCCTGTGGGCCTTGGGGCCTCTCCCACCGGGCCGTGCTCTGCATCCGCAGCGTGGGGCTGGATGAACAGAGCGCCCTGGAGCCCCCGGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCCTTGCAACCGCCATGTGCCCTGTCCGGCCACCTGGGCTGTAGGGAACTGGTCTCAGGTAAGTGT-AGGA-TGGGAGGGGGcctgcctc--cagctccaccctTGGTCTTCGGCTACAGATAG--GCAGACAGCCTTCCTGGAGCCTT-------------CGTGGGTGGGAGGGAGCCT---GG-GCATTCCAGGGTCCAGCCCCTGACTCTAAAGCCTCAGGGATCAGGAAGCGCCTGGCAAG-CATGTCCAC-AGCCATGGCCTTGAGCTGGGCAGGGCCAGAGAGGGCTGGCTGGGATC-----------------TCTGCCACTCTGACATCGGGCAGTGGACAGGTTACCCAGCCAT-------------------------------------GCCCCTCACCCTGGCTTCCCCTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAGCACCGAAATATCCTCTGCACCAATGACACTGGTGTC-------CCCTGTGACGAGGCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACCCTGTCGGTGGCCCCTGGACACACTGGGCCCTGAAGGCTCAGGTAGCGGCTCCTCCAGCCACGAGCTCTTCAATGAGGCTGACTTCATCCCACACCACCTGGCCCCACGCCCTTCACCGGTCTCATCACCCAAGCCAGCCACCATGGGCAACGCCATTGAGGAGGAGGCCCTAGAGCTGGACCTGCCGGGGCCCGTGTTTGTGGATGACTTCTACTACGACTACAATTTCATCAACTTCCATGAGGATCTGTCCT-ATGGGCCCTCTGAGGGGCCTGATCTAGACCTGGCGGAGACAGGGGATCAGACGCCCCCACCACACAGTGGTCCTGCTGTGCCCTCCACAGGTAGCCCCATGCCTGCCACAGAGCCTCCTGCAGCCAAGGAGGAGGGGGTACCGGGACCTTGGTCCCCTAGCCCTTGGCCCAGCCAGGCCggccactccccacccccaccctcagagCAGACCCCTGGGAACCCTTTGATCAATTTCCTGCCTGAGGAAGACGCCCCCAGAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCTGGCCCAGGGTTTCCATTGATGGCCTGCAGACGCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTGGCAAGGACAGCCAGAGCCAGCTGCCCCCTCCATGGAGGGACAGGACCAATGAGGTTTTCAAGGATGATGAGGAACCCGAGGGCCGCGGAGCAccccacccgcctctgagacccagccccacgctgccccctttgtccctgccccctttgtcccctgTCGGCAGTACCCACTCCTCTCCTAGTCCTGATGTGACAGAGCTATGGACAGGAGGGACTGTGGCCTGGGAGCCA-----------------------------------------------------ACTCTGGGGGGTGGCCTGGGGCCTGTGGACAGTGAACTGTGGCCCACTGTTGGGGtg-gctcctccccctcctcccc----ccatAGCCCATCTGCCAGAGATGAAGGGCAGGGACAGCCCCCTGGAGCCGAGGACTCCCACCTTCCCAACCCCAGGACCAGGCTTATGGGACGTGCAGACTGTGGCAGTGTGGGGGACCTTTCTCCCCACAACCCTGACTGGCCTCGGGCACAC------GCCTGAGCCTGCCTTGAACCCAGGACCCAAGGGCCAGCCTGAGTCCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTACTGTCCACGCCCGCTTGGGACAGCCCCGCCAACAGCCACAGAACCCCTGAGACCCAGCCGCTGGCTCCCAGCCTGGCTGAAGCCGTCTCCCCTGCGGACCTGTTGGCTGTCAGGAACGCTAGCTGGCAAGCGGGAAACTGGAGCCAGGCAAGTGGTGCGG-GCTGGGTGGGCTGGGA--GTTTCCGCGGGACCTTGGtgact--gtttcctcatctgaaaatgagcAGAG-------TGGGACACAGGCGCCATCTGTCT----------------CGCCTC---TCTTGGGGCAGGAGTTC----------CCAGGATTAA---------GGGAATGAGGGGACCCTGGGGC
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1322655 2407 +  24206276 -CTCTTTGGGTCCCTGGAT-TTGAAGTAGGCCTCAG-----------------------------------------------------------------GTCACACTCAGTTTCCCTGAGGGGAGGG----TGGCAGGAGTGGA-GGGGTTGTGCCATGTCACCAAGCTTTGAGGGCAGGACACTTAACTGGG-CTTGGAGCTGTGGAG--AATCATCCACTGGCCTCAGTCCCAGCTCTGCCCAAAC--------TCTGGAAGCC----CAGCCTGGCCCTCCCTGCTGGTGAGCC-TGCTGATGCCACTCATCTGATGCCATAGTGATGCCACCCATGTGCCCTCACCAGGTGGTGGGCAGGTGAGTGGCAGCTGTGCTCCAGCTCCTGTGGGCCTGGGGACCTCTCCAGCCAGGCCGTGCTCTGCATCCGCACTGTGGGGCTGGATAAGCAGAGCGCCCTGGAGCCACCCGCCTGTGAACACCTTCCCCAGCCCCCTACTGAAACCCATTGAAACTGCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTGT-GGGA-TAGGAGGGGGCCCGCCTC--CAGCTCCACCCTTGGTCTTTGGCTACAGGTAG--GCAGACAGCCTTCCTGGAGCCCT-------------CGTGGGTGGGAGGGAGCCT---GG-GCATTCCAGGGTCCAGCCCCTGACTCTAAAGCCTCAGGGATCAGGAAGCCCCTGGCAAG-CATGTCCAC-AGCCATGACCTTGAGCTGGAC----------AGGGCTGGCTGGGGTC-----------------TCTGCCACCCTGACATAGGGCAGTCGACAGGTTACCCAGTCATGCCCCAGCGTCCCCTGGCACCCTGCCTCCCAGCCTAAGCCCCTCACCCTGGCTTCCCCTGCAGTGCTCAGTGACATGTGGGGAGGGTACTCAGAACCAAAATGTCCTC-GCACCAATGACACTGGTGTCCTGGTGTCCCTTTGTCGAGGCCCAGCAGCCACCCAGCGAAGTCACCTGCTCTCTGCCACCCTTTCGGTGGCCCCCGGACACACTGGGCCCTGAAGCCTCAGGCAGCGGCTCCTCCAGCCATGAGCTCTTCAATGAGGCTAACTTCATCCTGCGCCACCTGGCCCCAGGCCCTTCACCTGCCTCATCACTCAAGCCAACCACCATGGGCAACGCCATTGAGGAGGAGGCCCTAGAGCTGGACCTGCCAGGGCCCGTGTTTGTGGACGACTTCTACTATGACTACAATTTAATCAACTTCCACAAGGATCTGTCCT-ATGGGCCCTTTGAGGAGCCCGATCTAGACCTGGAGTGGACAGGGGATCGGACTCCCTGACCACACAGCCATCCTGCTGTGCCTTCCATGTGTAGCCCCGTGCTTACCACAGAGCCTCCTGCAGCCAAGGAGGAGGGGGCACCGGGATCTTGGTCCCCTAGCCCTTGGCCCAG----------------CCACCACCACCCTCAGAGCAGACCCCTGGGAACCCTTTGATCAATTTCCTGCCTGAGGAAGAAGGTCCCATAGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCTGGCCCAGGGTTTCCATTGATGGCCTGCAGATGCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTAGCAAGGACAGCCCGAGCCAGCTGCCTCCTCCATGGAGGGACAGGACCAACGAGGTTTTCAAGGATGATGAGGAACCTGAGGGCCGCAGAGCACCCCACCTGCCTCCAAGACCCAGCCCCACACTGCCCCCTTTGTTCCTG---------------GTCGGCAGCACCCACTCTTCTCCTAGTCCTGACGTGACAGAGCTGTGGATAGGAGGGACTGTGGCCTGGGAGCCAGCTCTGGAGGgtggcctggggcctgtggagagtgaactgtggcccgggacccagctctggagggtggcctggggcctgtggacagtgaactgtggccCACTGTTGGGGTG-ACTCCTCCCCCTCCCTCCCCCCGCCATAGCCCCTCTGCCAGAGATGAAGGGCAGGGACAGCCCCCTGGAGCCGAGGACTCCCACCTTCCCAACCCCAGGACCAGGATCATGGGACCTGCAGACTGTGGCAGTGTGGGGGACCTTCCTTCCCACAACCCTGACTGGCCTCGGGCACAC------GCCTGAGCCTGCCCTGAACCCAGGACCCAAGGGCCAGCCTGAGTCCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTACTGTCCACGCCCGCTTGGGACAGCCCCGCCAACAGCCACAGAACCCCTGAGACCCAGCCGCTGGCTCCCAGCCTGGCTGAAGCCGTCTCCCCCACGGACCCATTGGCTGTCAGGAACGCTAGCTGGCAAGCAGGAAACTGGAGCCAGGCAAGTGATGCGG-GCTGGGTGGGCTGGGA--ATTTGCGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAGGTGCCATCTGTCT----------------CGCCTT---TCTTGGGGCAGGAGTTC----------CCAGGATTAG---------GGGAATGAGGGGACCTCGGGGC
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113749181 2381 - 132174527 -CTCCTTAGGCCCCTGGATATGGAAATAGGCCTCAG-----------------------------------------------------------------GTCACTCTCAGTTCCCCTGAGGAGAGGG----TGGTAGGAGTTGA-GGGGCTGGGCCATGTTACCAGACTTAGGGGGCAGGACACCTACCTGGG-CTTGGAGCTCTGGAG--AAGCAGCCACTGGCCTCGGTCCCAGCTCTGCCCAAACCCTGAGGGCCTGGGAGCC----CGGCCTGGCCCTCCCTGCTGGTGAGAC-TGC--------------TGATGCCACACTGATGCCACCCGTGTGCCTTTGCCAGGTGGTGGGCAGGTGAGTGGCAGCTGTGCTCAAGCTCCTGTGGGCCTAGGGGCCTTTCCCGCCGGGCCGTGCTCTGCATCCACAGCGTGGGGCTGGATGAACAGAGCGCCCTGGAGCCGCTGGCCTGTGAACACCTTCCCCAGCCCCCGGCTGAAACCCCCTGCAACCGCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTGT-GGGA-TGGGAGGGG--CCGCCTC--CAGCGCTACCCTTGGTCTCAGGCTACAGCGAG--GCAGACAGCCTTCCTCCAGCCCTTACTGCCTGGTACCATGGGTGGGAGGGAGTCT---GGAGCATTCCAGGGTCCAGCCTCTGACTCCAAAGCCTCAGGGATCAGAAAGCCCCTGGGAAGCCATGGCCAT-AGCCATGACCTTGAGCGGGGTAGGGCCAGAGAGGGCTGGCTGGGGTC-----------------CCTGCCACTCTGACACCAGGCAGTGGACAGGTTACCCTGCCTTGCCCCAGCATCCCCTGGCGGCCTGCCTCCCAGCCTGAGCCCCTCACCCTGGCTTCCCCCACAGTGCTCAGTGACATGCGGGGAGGGCACTCAGCACCGAAGTGTCCTCTGCACCAATGACACTGGTGTC-------CCCTGTGATGAGGCCCAGCAGCCAGCACGCCAAGTCATCTGTTCTCTGCCACCCTGTCCACGGCCCCTGGACACACTGGTCCCTGAAGGCTCAGGCAGCGGCTCTTCCAGCCACGAGCTCTTCAATGAGGCTGACTTCATCCCGCGCCGCCTGGCCCCGCGCCCTTTACCCACCTCGGCACCCAGGCCAGCCAGCATGGGCAACGCCATCAACGAGGAAGCCCTGGAGCCGGACCTGCTGGGGCCCGTGTTTGTGGATGACTTCTACTATGACTACAATTTCATCAACTTCCACGAGGACCTGTCTT-ACGGGCCCTTTGAGGAGCCCGATCTAGACCTGGTGGGGACAGGGGATGGGACACCCACACCACGTGGCCATCCTGCTGCACCCTCAACGGGTAGCCCCGTGCCTGTCACAGAGCCTTATGCAGCCACGGAGGAGGGGGCGCTGGGACCTTGGTCCCTTAGCCCTTGGCCCAGCCAGGCCGGCCACTCCCCACCCCCACCCTCAGAGCTGACCCCTGGGAACTCTTTGGTCAATTTCCTGCCTGAGGAAGATGCCCCAATAGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCTGGCCCAGGGTTTCCCCTGATGATATGCAGACGCCTGCCGCCCCTGGGAGCCAAAATCACTT---GGTTGGTGAGGATAGCCAGCGCCAGCTGCCCCCTCCATGGTGGGACAGGACCAATGAGGTTTCCGAGGATGATGAGGAACCTGGGGGCCGCATAGCCCCCCACCTGCCCCCGAGACCCAGCCCCACGCTGCCCCCTTTGTCCCCT---------------GTCAGCAGCACCCACTCCTCTCCTGGTCCTGATGTGGTGGAACTGTGGACAGGAGAGACTGTGACTTGGAAGCCA-----------------------------------------------------GCTCTGGAGGGTGGCCTGGGGCCTGGGGACAGTGAGCTAAGGCCCACTGTGGAGGTG-GCTCCTCCCCTTCCTCCTC----CCATAGCCCCTCTGCCAGAGATGGAAGGCAGAGACAGCCCCCTGAAGCCGGGGACTCCCAACTCCCCAACCCCAGGACCAGGCTCCTGGGACCTGCAGCCTGTGGCAGTTTGGACCACCTTCCTCCCCATGACACTGACTGGCCTTAGGCACACACCTGAGCCTGAGCCTGCCCCGAGCCCGGGACCCAAGGGCCAGCCTGAGTCCCTCAGACCTGAGGTGCCCCTGAGCTCTGGGCTGCTGTCCATGCCAGCTTGGGATAGCCCTGCAAACAGCCGCAGAGGCCCTGAGACCCAGCCCCCGGCCCCCACCCTGGCTGAGGCGGGGCCCCCTGTGGACCCGCTGGCTGCCAGGAATGCTAGCTGGCAAGCTGGAGACTGGAGCAAGGCAAGTGGTGCAG-GCCCGGTTGGCGGGGA--GTTCGCGTGGGACCTTGGTGATT--GTTGCCTCATCTGAAAATGAGCAGAG-------TGGGACACAGGCGCTGTCCGTCC----------------CACCTC---CCTCAGGGCAGGGGTTC----------CCAGGATTAG---------GGGGATGAGGGGACCCCAGGGC
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90192136 2284 + 124595110 -GTCTTTGGATCTCTGGAT----------ACCTTGG------------------------------------------------------------------------CCAGGTCCCAGGGGGTAAGGGTTGTTGGTGGTAGTGAA-GAGG----GCTCTGCCACTGGGTTTCAGGGGCAGGGCACTGACTTGGGACTTGGCTTGCTGGGGTTTCTCCTCCATT-----------CAGGTTTGTCTGCACCCCATTGGCCTGGAGCCTTGTATGGCATGGGCATCTTTGCTCGTGAACCTTGCTCATGATAGGTGT-TCATGTCACCCTGTTACCGC----------TTACCAGGTGGTGGGCAGGGGAGTGGCAGCCATGTTCCCGATCCTGCGGGCCCGAAGGCCTCTCTCGCCGGGCTGTGTTCTGCATACGTAGTATGGGGCTGGATGAGCAGCGTGCTCTTGAGCTATCTGCCTGCGAACATCTTCCCCGTCCCCTGGCTGAAACCCCGTGCAACCGTCATGTAATCTGTCCTTCCACTTGGGGTGTGGGGAACTGGTCTCAGGTAAGTGT-AGAAGTGAAAGGGGACCTGCCTC--TGGTACTACCATTG--------------------------------CCTGGAATCCTTACTGCTTGGTACCCGAAGTGGGAGGGAGCCTAGGGG-GCATTCCTGGGACAA--CACTGTTCTCAGAGCCTTGGGGGTCAGGGATTCGTTGGCATGCTATGACTGTAAGCTATCATCCTGAGGCGAGCATAGCCATAGAGGGCTGTCTGAGACT-----------------TCTGTCACTAAGACACCA-GCAGCGGGCACGTTCTGCCACCGTGCCCCAGCTTTCCCAGAAGCCC--CATCTTGGCCTGAG-------CTGTGACCTCCTTTGCAGTGCTCTGTGACATGTGGAGCTGGCATTCGGCAACGAAGTGTCCTCTGCATCAACAACACTGATGTC-------CCCTGTGATGAAGCTGAGCGACCAATAACTGAGACCTTTTGTTTTCTGCAACCCTGCCAGTATCCCATGTACATAGTGGACACAGGTGCCTCTGGAAGCGGCTCCTCCAGCCCCGAGCTCTTCAATGAGGTTGACTTCATCCCGAACCAGCTGGCCCCACGACCTTCCCCAGCATCCTCACCCAAGCCGGTCAGCATCAGCAACGCTATTGATGAGGAG------GAACTAGATCCGCCAGGGCCCGTGTTTGTGGATGATTTCTATTATGACTACAATTTCATTAACTTCCATGAAGACCTGTCCT-ATGGGTCCTTTGAAGAACCCCATCCAGACCTGGTTGATAATGGGGGTTGGACAGCACCACCTCACATCAGACCCACTGAATCTCCCTCAGATACCCCAGTACCTACTGCAGGGGCTCTTGGAGCTGAGGCAGAAGACATTCAGGGATCTTGGTCTCCTAGCCCCTTACTCAGTGAGGCTAGCTATTCCCCACCAGGA---TTAGAGCAGACCTCCATCAACCCCCTGGCCAATTTCTTGACTGAGGAAGATACTCCCATGGGGGCCCCTGAACTTGGATTCCCCAGCTTGCCCTGGCCCCCTGCTTCAGTTGATGATATGATGACACCTGTTGGCCCTGGAAACCCTGATGAGTTGCTAGTGAAAGAAGATGAGCAGAGCCCACCATCCACTCCATGGTCTGATAGGAACAA----ACTTTCTA--CAGATGGTAACCCCTTGGGTCATACATCCCCTGCCCTGCCCCAAAGCCCTATCCCCACACAGCCCTCTCCACCCTCC---------------ATCAGTCCTACCCAAGCTTCTCCGAGTCCTGATGTGGTGGAGGTGTCGACAGGATGGAATGCGGCCTGGGACCCT-----------------------------------------------------GTGCTAGAGGCTGACCTGAAGCCCGGACACGGTGAGCTGCCGTCCACTGTGGAGGTG-GCTTCTCCTCCACTTCTTC----CCATGGCCACTGTGCCAGGCATCTGGGGCAGGGACAGCCCTCTTGAACCAGGAACGCCTACCTTTTCCAGCCCAGAACTGAGCTCACAGCACCTAAAAACTCTGACAATGCCTGGGACCTTGCTTTTGACAGTACCAACTG-------------------ACCTGAG--------GAGCCCGGGACCATCGGGCCAGCCACAGACCCCTAACCTTGAGGGAACCCAGAGCCCTGGGTTGCTGCCTACACCAGCTCGGGAGACTCAAACTAACAGTAGCAAGGACCCCGAGGTCCAGCCTTTGCAGCCCAGCCTAGAGGAGGATGGTGACCCCGCAGATCCACTGCCTGCCAGGAATGCCAGCTGGCAAGTAGGAAACTGGAGCCAGGTGAGTTGTGTAGAGCCAGGGATGGTGGGAACGTTTGAGCAGGACCCT-GCGACTCAGTTT-------------TGAGCAGAG-------CAAGACACAGCC-----CTGTTC----------------ATCCTTGGAGAGTGGCGTAACGGTTC----------CTGGGATGAGCCAACTGACAGCCATGATGGG---CTGAGGC
i mm10.chr9                      C 0 I 115
s canFam3.chr3                    58216095 2139 +  91889043 TGTGTTTGGGTTTTGGGAG----------GGCTCAG-----------------------------------------------------------------GATTTGC-CAGTTCCCCC-CGGCGAGGG----TGGCAGGAGCAAATGGGGCTATGTCCTGCCACCGGGCCTCGGGGGTCAGGTTGCCGACCGGG-CTCAGGGCTCTGGGG--AATCGTCCCCTGGGCTTGGGCCTGGCCCTGCCTGGAGCCTGAGAGCCCGGGCATC----CAGCCAG----CCCTGGCTGACGAGGC--------------------------------------CTGTGTGCCCT--GCAGGTGGTGGACAGGGGAGTGGCAGCCGTGCTCCCACTCCTGCGGGCCAGGGGGCCTGTCCCGCCGCGCGGTGCTCTGCATCCGCAGCGTGGGGCTGGATGAGCAGAGCGCCCTGGAGCCACCTGCCTGCGCACACCTGCCCCAGCCTCCTGCCGAAACCCCTTGCAACCAAAATGTGTCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGCGTCAGGA-TGGGACAGGGCCACCCCCAGTGGCCCCCCCAGCAGCCTTGGGCTTCGGGGAGCTGGAGACAGTCTTC---------------------------------AGGGAGCCC---GG-GCTGTCCC-GGTCCAGCCTCTGTCCCCAGAGCCTCA-GGACCACGGTGC-CCTGGCAAGCCACCACTACAAGCCATGGCCTTGAGGcggagggggccggagggggccggagggggccggagggggccAGCTGGGCCTCCTCCTCTGACAGCGGGCAGTGG-CAGGT------GCCCTACC--------------------------------AGGCCCCTCACTCTGGTCTCCTCTGCAGTGCTCGGTGACGTGCGGGGAGGGCACACAACACCGAAGTGTCCTCTGCACCAATGACACCAGCGTC-------CCCTGCGATGAGGCCCTGCGGCCGGCCAGTGGGGTTGCCTGTTCTCTGCCGCCCTGTCCATGGGCCCTGGA---------CCCCGAAGGCTCGGGCAGTGGCTCCTCCAGCCGCGAGCTCTTCAATGAGATCGACTTCATCCCCCCCCGCCTGGCCCCACGCCCTCTGCTCGCCTCGTCCCCCGAGCCGGCCAGCATGAGCAACGCCATCGAGGAAGA---CCCCGAGTCGGGCCCGTCGGGGCCTGTGTTTGTTGACGATTTCTACTATGACTACAATTTCATTAACTTCCACGAGGACCTGTCCT-ACGGACCCTTTGAGGATCCCGACCCAAACCTGGCAGGTGCAGGGGATCGGACACCCCCACCCCTGAGCCGACCTGCGGAGGCTCCCACAGGCAC------------------------------------------------------------------CCCTCGGCCCAGCCAGGCTGGCCTGTCTCCGCACCCGCCCTTGGGTCAGGCCCCTGGGAGCCCCCCGGGCAATTTCTTACCTGAGGAAGATGCCCCCGTGGTGACCCCAGACTCGGGGCTCCCCAGCTTGCCCCAGCCCCCGGTGTGGGTCAGTGGCAAGGACACACCTGCTGCCCCCGGAAGCCACAACAGGCTCCCGGGAGGGGAGGACCGCCAGAGCCAGCCACCCCCTCCGTACTGGCAGAGGACCAACGAGCTCTCTGAGGACGAGGAGGAAGCCTTCGGTGGTGGAGCAACCGGCCTGCCCCAAGGACGGCGCCCCACGTCACCCCCTTGGTCCTCC---------------ATCCACACTCGCCACACCTCCCCAAGTCCTGACGTGGGAGACCTGTGGACCGTGGGGACAGTGGCCTGGGAACCA-----------------------------------------------------GCTCCAGAAGGCAGCCCGGGGCCTATGGACACTGAGCTACGGCCCACCGTCGGGGGGCGCCCTTCTACTCCTTCCCC----CCA----CGCTCTGCCTGAGACCTGGGGTGGAGACGGCCCCCTGGAACCGGGGACTCCCACCACTGCAGCCCCA------------TGGGACCTGCAGACCCCGGTCCTGCCAGGGACCTTCCTTCCGACA-----------------------------GCCCA----------GGGCCCAGGACCTGAGGACCAGCC------------------AGTGCCCCCCCACCCCACATCACGGCCCACACCAGCTCAGGACGGGTCAGCCGATGG---CAGAGTCCCCAAGGCCCAGCCTGTGGACCCCAGCCCGGCCAA---------------GGACCCCCCACCCGCCCAGAATGCCAGCTGGGAGGTGGGGAGCTGGAGTGAGGTAAG------GG-GC--------CAGGGA--A---GAGCAGGACCTC----ACT--GTGTCCTCTTCAGCACATGGCCCACGGGGGTCCCGGGGTACAGAAACCGGCGGCCCGAGCTGGGAGCAGCGATGCCCT---CCGTGTGCCAGGGGGCCATCCGCCCTGTCAGCCTCAG----TTTCTTAAGATGAGGAGAC----GGGC
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211   10 +  99152023 I

a score=3861998.000000
s hg38.chr15_KI270850v1_alt          38429 1982 +    430880 CCATTCCTGGGCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGGCACA---------CTCTGGCAGC---ACAGCATGCCCCAG-GATGGAG---CTGGCTCAGACAGCTGTGC-AGTGGGGAGGGTCCCTG--TGTGGCCACCAGGCCCAGTCCTGCCCAGCAGG------CAGCAG--CTTCCCTGAGGCTCTGTCTGGCTCCTCCAGGCTGGACTCAGCCCACTGCTACCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGGCAGTGACCT-GC---AGACGTCTGAGCTGC-AT-GAAAGAAGCTGGCTAGTGCCCCCT----CCCTGGGTCCCCAGATGGTCACTGCAGGAGAAGCAAGCTTCTGTTCAGATTCCTAATTTTGGGGTGGGAAGGGGCAGGCTGAGGCCCACAGGGCTTGTTTTGCGCGGGGATAGGCAGCGATTTGGCTGCTGGTACCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCGACGAGGCTGGTCAGGATAGCTGGTCAGGGGTGCCCACAGGGTCTCCTCCCCCGAACCTCTGCACCAATGACACTGGCACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGCTGGTTGCTGG----GGGGATTTGACTtttcattctcatggtcttcctgggaggtgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtcttgctagcctaggtggGTAGTTTCCTGGCTGTGGAGGCCTGGCGAGGATGGGCTCTGCCTGGCTTTCACGGGTCTGTGC----CCCGCAGTGCTCCACCACCTGTGGCCTGGGTGCCCTCTGGAGGCCGGTGTGCTGTAGCTCCAGCCGGGATGAGGACTGCGACCCCGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGTGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAGGTGCATGAGGATGGAGCCAGGACAGGCATCCCCAGGGCATGGGGTGGAGCCCTGGTTCCCCACGGCCTGTGTTCCGAGAGCGGCAGGGAAGG-GGAGGGCTCCAGGCTGCATGTCTATGTGCCTGATCGCACCGGATTCCGAATCTCTTGGGAGTCATC--TCATCTTTGTCTGGCTTGGCCTGTCT-----CCTTTCCTCTGTATCTTTGAC-CCCATC--TGGAC------------------------TTGTTCCT--------CCCTTTCTCTGTCTGTCCCAGCCCATGGCAGC-CCCTGGCCATGCCACCTTTTGCCTGGGGCCTGCCAGCCTTGGCCTCTCGCTGGGGCTCTTCAGGGATTTGCCCCCGGCTGGGGCGT----GGGTCTGATGCCTTTCCTGCCACACGCCTCACGGGGTCACGCCTGTGGGCCTGCACGTGGGGATGTGTCCACAC-AAGTCT----CTCGGTCCCCAGTGCTCCCACAGCTGTGGCAGAGGTTCCTCAGTGTGGGACATGCAGCATGTGGACACATGGGCCCTCTGGCCACTGTGGCCCTTCCATTGTCAGCCTGGACCTGCCAAGCTGCCTGTGCACTGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACATGTCTTCCTGGAGGGAGGTGAGGCCTGGGCGTTG--AGTTGGGGGGA--GGGGACACCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGCCCAGAGCCAGACCTCTGCGAGGAGGC-ACTGAGACCCAACACCACCCGGCCCTGCAACACCCACCCCTGCACACAGTGGGTGGTGGGGCCCTGGGGCCAGGTGAGCCAGGCTGC----GGGGGGGAGCAGGGAGCAA---GTGCTTGGTAGCGCCTGGTCAGTCCTGGG-TTGGGTGAAGGAGCtgtggagt-gtgtgctgtgagccaggctgtctgtggcccctgcacatgc-agcagtcactggacaaag-ccctgccatgctggtgctcaca-cctgacagggagaaacagac-aaggaaAGGGCATGTGTGctgtgatg
s panTro4.chr15_GL392289_random      41026 1982 -    187897 CCATTCCTGGGCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGGCACA---------CTCTGGCAGC---ACAGCATGCCCCAG-GATGGAA---CTGGCTCAGACAGCTGTGC-AGTGGGGAGGGTCCCTG--TGTGGCCGCCAGGCCCAGTCCTGCCCAACAGG------CAGCAG--CTTCCCTGAGGCTCTGCCTGGCTCCTCCAGGCTGGACTCAGCCCACTGCTACCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGGCAGTGACCT-GC---AGACGTCTGAGCTGC-AT-GAAAGAAGCTGGCTAGTGCCCCCT----CCCTGGGTCCCCAGATGGTCGCTGCAGGAGAAGCAAGCTTCTGCTCAGATTCCTAATTTTGGGGTGGGAAGGGGCAGGCTGAAGCCCACAGGGCTTGTTTTGCACGGGGATAGCCAGCGATTTGGCTGCTGGTACCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCGACGAGGCTGGTCAGGATAGCTGGTCAGGGGTGCCCACAGGGTCTCCTCCCCCGAACCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGCTGGTTGCTGG----GGGGATTTGACTtttcattctcatggtcttcctgggaggtgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtcttgctagcttaggtggGTAGTTTCCTGGCTGTGGAGGCCTGGCGAGGATGGGATCTGCCTGGCTTTCACGGGTCTGTGC----CCCGTAGTGCTCCACCACCTGTGGCCTGGGTGCCCTCTGGAGGCCGGTGCGCTGTAGCTCCAGCCGGGATGAGGACTGCGAACCTGCTGGCCGGCCCCAGTCTCCCCGCCGCTGCCACCTGTGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAGGTGCATGAGGATGGAGCCAGGACAGGCATCCCCAGGGCATGGGGTGGAGCCCTGGTTCCCCACGGCCTGTGTTCCGAGAGCGGCAGGGAAGG-GGAGGGCTCCAGGCTGCATGTCTACATGCCTGATCGCACCGGATTCCGAATCTCTTGGGAGTCATC--TCATCTTTGTCTGGCTTGACCTGTCT-----CCTTTCCTCTGTATCTTTGAC-CCCATC--TGGAC------------------------TTGTTCCT--------CCCTTTCTCTGTCTGTCCCAGCCCATGGCAGC-CCCTGGCCATGCCACCTTTTGCCTGGGGCCTGCCAGCCTTGGCCTCTCGCTGGGGCTCTTCAGGGATTTGCCCCCGGCTGGGGCGT----GGGTCTGATGCCTTTCCTGCCACACGCCTCACGGGGTCATGCCTGTGGGCCTGCACGTGGGGATGTGTCCACAC-AAGTCT----CTCGGTCCCCAGTGCTCCCACAGCTGTGGCAGAGGTTCCTCAGTGTGGGACATGCAGCATGTGGACACGTGGGACCTCCGGCCACTGTGGCCCTTCCGTTGTCAGCCTGGACCTGCCAAGCTGCCTGTGCACTGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACATGTCTTCCTGGAGGGAGGTGAGGCCTGGGCGTTG--AGTTGGGGGGA--GGGGACACCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGCCCAGAGCCAGACCTCTGCGAGGAGGC-ACTGAGACCCAACACCACCCGGCCCTGCAACACCCACCCCTGCACACAGTGGGTGGTGGGGCCCTGGGGCCAGGTGAGCCAGGCTGC----GGCGGGGAGCAGGGAGCAA---GTGCTTGGTAGCGCCTGGTCAGTCCTGGG-TTGGGTGAAGGAGCtgtggagt-gtgtgctgtgagccaggctctctgtggcccctgcacatgc-agcagtcagtggacgaag-ccctgccatgctggtgctcaca-cctgacagggagaaacagac-aaggaaAGGGCACATGTGctgtgatg
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12029 1975 -     28805 CCATTCCTGGGCAGCACA----GGGGGCTTC-------AGGGAAGGCAG------GGGCAGGCACA---------CTCTGGCAGC---ACGGCACGCCCCAG-GATGGAG---CTGGCTCAGAGAGCTGTGC-AGTGGGGAGGGTCCCTA--CATGACTGCCAGGCCCAGTCCTGCCCAGCAGG------CAGCGG--TTTCCCTGAGGCTCCACCTAGCTCCTCCAGGCTGGGCTCAGCCCACTGCCACCTGGCTCCGCCCTCAGTGGCTCCACCCTCCTCTGGCAGTGACCT-GCCAAAGGAGTCTGAGCTGCAAT-GAAAGAAGCTGGCTAGTGCCCCCT----CCCTGGGTCCCCAGATGGTCACTGCAGGAGAAGCAAGCTTCTgttcagatccctaattttggggcgggaaggagcaggctgaggcccacagggcttgttttgcgcagggatacccagcgatttggctgctggtaccagga-cccagccttccCTTCCCTGGTGCCTCTGGGAAGTGACGAGGCTGGTCAGGATAGCTGGTCAGGGGTGCTCACAGGGTCCCCTCCCCC-CACCTCTGCACCGATGACACTGAAACACACGCCCTTTGTCCCATGTGAGCAGGAGCGGCTGGTTGCTGG----GGGGATTTGACTtttcatcctcacggtcttcctgggagg-gggtggaggagcctattttgcatataaggaaactgaggcccgga----agagg----ccctgtcttgctgaggtctcgctagcctaggtggGTAGTTTCCTGGCTGTGGAGGCCTGGCGGGGATGGGATCTGCCTGGCTTTCACGGGTCTGTGT----CCTGCAGTGCTCCACCACCTGTGGCCTGGGTGCGGTCTGGAGGCCGGTGCGCTGTAGCTCCGGCCGGGATGAAGACTGCACCCCTGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGAGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAGGTGCGTGAGGATGGAGCCAGGACAGGCATCCCCAGGGCATGGGGT-GAGCCCTGGTTCCCCACGGCCTGTGTTCCGAGAGCAGCAGGGAAGG-GGAGGGCTCCAGGCTGCATGTGTGTGTGCCTGATCGCACCGGATTCCGAATCTCTTGGGAGTCTTC--TCATCTTTGTCTGGCTTGGCCTGTCT-----CCTTTCCTCTGTATCTTTGAC-CCCATC--TGGAC---TTGTCTTTCACCAGCTTGCCTTTGTTCCT--------CCCTTTCTCTGTCTGTCCCAGCCCATGGCAAA-CCCTGGCCATGCCACCTTTTGCCCGGGGCCTGCCAGCCTTGGCCTCTCTCTGGGGCTCTTCAGGGATTTGCCCCCGGCTGGGGCAT----GGGCTTGATGCCTTTCCCGCCACATGCCTCACGGGGTCACGCCTGTGGGCCTGCACGTGGGGATGTGTCCACAC-ACGTCT----CTTGGTCCCCAGTGCTCCCGCAGCTGCGGTGGAGGTTCTTCAGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCCACTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACCGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACATCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGATGGGGGGA--GGGGACGCCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGCCCGGAGCCAGGCCTCTGCGAGGAGGC-ACTGAGACCCAACACCACCCGGCCCTGCAACACCCACCCCTGCACGCAGTGGGTGGTGGGGCCCTGGGGCCAGGTGAGCCGGGCTGC----GGGGAGGAGCAGGG-----------------AGCGCCTGGTCAGTCCTGGG-TTGGGTGAAGGAGCTGTGGAGT-GTGTGCTGTGAGCCAGGCTCTTTGTGGCCCT--------------GTCACTGGACGAGG-CCCTGCCCTGCTGGTGCTCACA-CCTGCCAGGGAGAAACAGAC-AAGGAAAGGGCG-GTGTGctgtgatg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61596963 1998 + 171882078 CCACTTCTGGGCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGGCACG---------CTCTGGCAGC---ACAGCTCACCCCAG-GATGCAA---CTGGCTCAGACAGCTGTG--AATGGGGAGGGTCCCCG--CATGGCTGCCAGGCCCAGTCCTGCCCAGCAGG------CAGCAG--CTTCCCTGAGGCTCGGCCTGGCTCCTCCAGGCTGGGCTCAGCCCACTGCCAGCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGACAGTGACCT-GC---AGGCATCTGAGCTGC-AT-GAAAGAAGCTGGCCAGGGCCCCCT----CCCTGGGTCCCCAGATGGTCACTGCAGGAGAAGCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGCAGGCTGAGGCCCACAGGGCTTGTTTTGCACATCAATAGCCAGCGATTTGGCTGCTTGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCAACGAGACTGGTCAGGACAGCTGGTCAGGGGTGCCCTCAGGGCCCCCTCCCCC--ACCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACAGTTGGTTGCTGG----GGGAATTTGACTtttcattctcatggtcttcctgggagatgggtggaggagcctattttgcaaataaggaaactgcggcccaga----agagtg---ccctgtcttactgaggtctcacTAGCCTAGATGGGTAGTTTCCTGACTGTGGAGGCCTGGCGGGGATGGGATCTGCCTGGCTTTCACGGGTCTGTGA----CCCGCAGTGCTCCACCACCTGTGGCCTGGGTGCCGTCTGGAGGTCGGTGCGCTGTAGCTCTGGCCCGAATGAGGACTGTGCCCCCGCTGGCCAGCCCCAGCCTGCCTGTCACTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAGGTGCATGAGGATGGAGCCAGGACAGGCATTCCCAGGGCATGGCATGGAGCCCTGGTTCCCCACGGCCTGTGTTCCAAAAGCAGCAGGACAGG-GGAGGGCTCCAGGCTGCACGTCTGTGCACCAGATTGCACCGGATTCCGAATCTCTTGGGAATCTTC--TCATCTGTGTCTGGCTTGGCCTGTCT-----CCTTTCCTCTGTATTTTTGAC-CCCATC--TGGAC---TTGTCTTTCACCAGCTTGCCTTTGTTCCT--------CCCTTTCTCTGTCTGTCCCAGCCCCTGGCAGC-CCCTGGCCATGCCACCTTTTGCCTGGGTCCTGCCAGCCTTGGCCTCTTGCTGGGGCTTTTCAGGGACTTGCCCAGGGCTGGGGCGT----GGGCCTGATGTCTTTCCTGCCACATGCCTCATGGGGTCACGCCTGTGGGCCTACACCTGGGGATGTGTCCCCAC-ACGTCT----CTCGGTCCCCAGTGCTCCCACAGCTGCGGCAGAGGTTCCTCAGTGCGGGACGTGCAGTGTGTGGACACACGGGACCTCCAGCTGCTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGTTGGGGGGA--GGGGATGCCCTCAGACCCTGGCTGT-CCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCCCTGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGCCCGGAGCCAGGCCTCTGCAAGGAGGCAACTGAGACCCAATACCACAGGGCCCTGAAATACCCAACCCTGCACGCAGTCGGTGGTGGGGCCCTGGGGCCGGGTGAGCCGGGCTGC----GTGGAGGGATGGGGAGCAA---GTGCGTGGTGGCACCTGGTCGGTCCTGGG-TTGGGTGAAGGatcttttgagt-gtgtgctgtgagccaggctctctgtggcccctgcgcatgc-agcagtgactggacgagg-ccccgcc-cactggtgctcaca-cctgccagggagaaacagac-aaGGAAAGGGCACTTGTGCTGTGATG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108927078 1992 - 162156779 CCATTTCTGGGCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGGCACG---------CTCTGGCAGC---ACAGCCCACCTCAG-GATGCAA---CTGGCTCAGACAGCTGTGT-AATGGGGAGGGTCCCCG--CATGGCTGCCAGGCCCAGTCCTGCCTAGCAGG------CAGCAG--CTTCCCTGAGGCTCGGCCTGGCTCCACCAGGCTGGGCTCAGCCCACTGCCACCTGGCTCTGCCCTAAGTGACTCCACCCTCCTTTGACAGTGACCT-GC---AGGCATCTGAGCTGC-AT-GAAAGAAGCTGGCCAGGGCCCCCT----CCCTGGGTTCCCAGATGGTCACTGCAGGAGAAGCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGCAGGCTGAGGCCCATAGGACTTGTTTTGCGCATCGATCGCCAGCGATTTGGCTGCTTGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCGACGAGGCTGGTCAGGACAGCTGGTCAGGGGTGCCCACAgggtcccctccccc--acctctgcACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGTTGGTTGCTGG----GGGGATTTGACTTTTCATTCTCACGGTCTTCCTGGGAGGTGGGTGGAGGAGCCTATtttgcaaataaggaaactgaagcccaga----agaGGG--CCCCTGTCTTGCTGAGGTCTCGCTAGGCTAGGTGGGTAGTTTCCTGGCTGTAGAGGCCTGGCGGGGATGGGATCTGCCTGGCTTTCACGGGTCTGTGC----CCCGCAGTGCTCCACCACCTGTGGCCTGGGTGCCGTCTGGAGGTCGGTGCGCTGTAGCTCTGGCCGGGATGAGGACTGCGCCCCCGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAGGTGCGTGAGGATGGAGCTAGGACAGGCATTCCCAGGGCATGGGTTGGAGCCCTGGTTCCCCGCGGCCTGTGTTCCAAAAGCAGCAGGACAGG-GGAGGGCTCCAGGCTGCACGTCTGTGTGCCCGATCACACCGGATTCCGAATCTCTTGGGA----------GTCTGTGTCTGGCTTGGCCTGTTT-----CCTTTCCTCTGTATTTTTGAC-CCCATC--TGGAC---TTGTCTTTTACCAGCTTGCCTTTGttcct--------ccctttctctgtctgtcccagcccctggcagc-ccctGGCCATGCCACCTTTTGCCTGGGGCgggccagccttggcctctcgcTGGGGCTCTTCAGGGATTTGCCCCAGGCTGGGGCGT----GGGCCTGATGCCTTTCCCGCCACACGCCTCACGGGGTCACACCTGTGGGCCTGCACCTGGGGATGTGTCCCCAC-ACGTCT----CTCGGTCCCCAGTGCTCCCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCTGCTGCGGCCCTTCCACTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGgggcccagccctgcctcagctgGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGTTGGGGGGA--GGGGACGCCCTCAGATGCTGGCTGTGCCCTGACTGC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGTCCAGAGCCAGGCCTCTGCGAGGAGGC-GCTGAGACCCAACACCACACGGCCCTGCAACACTCACCCCTGCACACAGTGGGTAGTGGGGCCCTGGGGCCAGGTGAGCCGGGCTGA----GTGGAGGAGCAGGGAGCAA---GTGCGTGGTGGCACCTGGTCGGTCCTGGG-TTGGGTGAAGGATCTTTTGAGT-GTGTGCTGTGAGCCAGGCTCTCTGTGGCCCCTGCGCATGC-AGCAGTGACTGGACGAGG-CCCCGCC-CACTGGTGCTCACA-CCTGCCAGGGAGAAACAGAC-AAGGAAAGGGCACGTGTGCTGTGATG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1325062 1997 +  24206276 CCACTTCTGGGCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------TGGCAGGCACG---------CTCTGGCAGC---ACAGCCCACCCCAG-GATGCAA---CTGGCTCAGACAGCTGTG--AATGGGGAGGGTCCCCG--CATGGCTGCCAGGCCCAGTCCTGCCCAGCAGG------CAGCAG--CTTCCCTGAGGCTCGGCCTGGCTCCTCCAGGCTGGGCTCAGCCCACTGCCACCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGACAGTGGCCT-GC---AGGCATCTGAGCTGC-AT-GAAAGAAGCTGGCCAGGGCCCCCT----CCCTGGGTCCCCAGATGGTCACTGCAGGAGAAGCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGCAGGCTGAGGCCCACAGGGCTTGTTTTGCGCATCAATAGCCAGCGATTTGGCTGCTTGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCAACGAGGCTGGTCAGGACAGCTGGTCAGGGGTGCCCTCAGGGCCCCCTCCCCC--ACCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACAGTTGGTTGCTGG----GGGAATTTGACTtttcattctcatggtcttcctgggagatgggtggaggagcctattttgcaaataaggaaactgcggcccaga----agagtg---ccctgtcttactgaggtctcactagcctaggtggATAGTTTCCTGACTGTGGAGGCCTAGCGGGGATGGGATCTGCCTGGCTTTCATGGATCTCTGC----GCTGCAGTG-TCCACCACCTGCGGCCTGGGTGCCATCTGGAGGCTGGTGCGCTGTAGCTCTGGCCCGAATGAGGACTGTGCCCCCGCTGGCCAGCCCCAGCCTGCCTGTCACTGCCACCTGCAGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAGGTGCATAAGGATGGAGCCAGGACAGGCATTCCCAGGGCATGGCGTGGAGCCCTGGTTCCCCACGGCCTGTGTTCCAAAAGCAGCAGGACAGG-GGAGGGCTCCAGGCTGCACGTCTGTGCACCAGATTGCACCGGATTCCGAATCTCTTGGGAATCTTC--TCATCTGTGTCTGGCTTGGCCTGTCT-----CCTTTCCTCTGTATTTTTGAC-CCCATC--TGGAC---TTATCTTTCACCAGCTTGCCTTTGTTCCT--------CCCTTTCTCTGTCTGTCCCAGCCCCTGGCAGC-CCCTGGCCACGCCACCTTTTGCCTGGGTCCTGCCAGCCTTGGCCTCTTGCTGGGGCTTTTCAGGGACTTGCCCAGGGCTGGGGCGT----GGGCCTGATGTCTTTCCTGCCACATGCCTCATGGGGTCACGCCTGTGGGCCTACACCTGGGGACGTGTCCCCAC-ACGTCT----CTCGGTCCCCAGTGCTCCCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGATGTACAGTGTGTGGACACACGGGACCTCCAGCTGCTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGTTGGGGGGA--GGGGATGCCCTCAGACCCTGGCTGT-CCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCCCTGAGGCCTGTGGTGGTGGTGAGCAGCAGCATCTGGTGACCTGCCTGGAGCCAGGCCTCTGCAATGAGGCAACTGAGACCCAATACCACAGGGCCCCGAAATACCCAACCCTGCACGCAGTGGGTGGTGGGGCCCTGGGGCCGGGTGAGCCGGGCTGC----GTGGAGGGGTGGGGAGCAA---GTGCGTGGTGGCACCTGGTCGGTCCTGGG-TTGGGTGAAGGatcttttgagt-gtgtgctgtgagccaggctctctgtggcccctgcgcatgc-agcagtgactggacaagg-ccccgcc-cactggtgctcaca-cctgccagggagaaacagac-aaGGAAAGGGCACGTGTGTTGTGATG
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113751562 1877 - 132174527 CCATTCCTGAGCAGCACA----GGGGACCTC-------AGGGAAGCCAG------AGACAGGCACA---------CTCTGGGAGC---ACA-----CCCCAG-GATGGA-------GTTCAGACAGCTGTGC-AGTGGGGAGGATCCCCG--CATGGCCTTCAGGCCCAGTCCTGCCCAGAAGG------CAGCAAGCTTCCCCTGAGGCTCAGCCTGGCTCCTCCAGGCTGGGCTCAGCCCACTGCCACCTGGCTCTGCCTTC--TAGCTCCACCCTTCTTTGGCAGTGACCT-GC---AGGGGTCTGAGCTGC-AT-GAAAGAAGCTGGCCAGTGCCCACT----CCCTGGGTCCCCAGATGGTCACTGCAGGAGAAACAAGCTTCTGTTCAGATCCCTAATTTGAGGGTAGGAAGGGGCAGG--------------------------------------------------------------------------------------------------------CTGGTCAGGATAGCTGGTCAGGGGTGCCCGCAGGGTCCCCTTCCCG-TGCCTCTGCACCAGTGACACTGGAACACAGGCCCTTTGTCCTTTGTGGGCAGGGGTAGTTGGTTGCTGGGGTAGGGGGGTTGATTttttattctcatggtcttcctgggaggtgggtggaggagtctattttgcaaataagagaactgaggcccaga----agaggg---gcctgtcttgctgaggtttcgctagcctaggtgggtag-ttcctggctgtgggggcct----------gggtctgcctggctttcatgggtccgtgc----ctcacagtgctccacCACCTGTGGCCTGGGCGCCATCTGGAGGCCAGTGCGCTGTAGCTCCGGCCGGGATGAGGACTGCGCCCCTGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGAGGCCCTGTGCCACCTGGCACTCGGGCAACTGGAGTAAGGTGCGTGAGGACGGAGCCAGGGCAGGGAGCCCCAGGGCACAGGGTGGAGCCCTGGGTCCCCACAGCCTGTGTTCCGAGAGCAGCAGGGCAGG-GGAGGGCTCTGGGCTGCATGTCTTGGCACCCGATCAAACTGGA-TCTGAATCTCCTGGGAGTCTTC----ATTTTTGTCTCACTTGGCCTGTCT-----CCTCCCCTCTGTATTTCTGAC-CCCATC--TGGAC---TTGTCTTTCACAAGCTTGCCTTTGTTCCT--------CCCTTTCTCCGTCTGTCCCCGCCCATGGCAGC-CCCTGGCCGGG-CATCTTTTGCCTGGGGCCTGCCAGCCTTGGCCTCTCACTGGGGCTCTTCAGGGATTTGCCCCTGGCTGGAGTGGCTGAAGGCCTGATACCTTCTTTGGCACACACCTCACGGGGTCACACGTGTGGGCCTGCAT---GAGAGACGTCCACAC-ACGTCT----CTCCGTCCCCAGTGCTCCCGCAGCTGTGGTGGAGGCTCCTCCGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCCGCTGCGACCCTTCCATTGTCAGCCGGGGCCAGCCAAGCCGCCCGCACACCGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTCC--ATTTGCGGGGA--GGGGGCGCCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCTTGCTC----------CCCAGTGCTCTGAGGCCTGTGGCGGGGGTGAACAGCAGCGGCTGGTGACCTGCCCGGAGCCAGGCCTCTGCGAGGAAGC-TCTGAGACCCAACACCACGAGGCCCTGCAATACCCACCCCTGCACGCAGTGGGTGGTGGGGCCCTGGGGCCAGGTGAGCTGAGCTGC----ATGGAGGAGCAGGGAGCAA---GGGCTTGGTGGCACCTGGTCGATCGTGGG-TTGGGTGaagcagctattgagt-atg-gctgagagccaggctctc--tggccactgctcatgc-agcagtgactggatgagg-tcacgccctgctggtgctcacagcctgccagggagaaacagac-aaggaaAGGGCACGTGTGCTGTGATA
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90194535 1732 + 124595110 CCATTCCTAGGCCACACAGAAGGAAGGCTTC-------A--GAAAGCAGCAAATCAAGCTGCTACAAATCAAGTGCTCAGACTGG---CCTACATGCCCCAGCAATGGGAATCATACCTTAGCTAGCTGTATGGGTAAGGAAGGCCTCTTTCCATGGCTCCCACACCCAGTGCTGCCTGGGAGGGTCGGACAG--G--TATAGCTGAGGCACAGTATGACTCCTCCAGAT---GTTTCAACCATTGTCAC---------CCTTCAAAGTC----CCCGCTTTTGTTAGGGATCTCAT---AATAGTCTGGGTTGT-ATGGGAAAGAGATGACCAGTTCTCCTT----CTCT--------AAATTGTCATTGTAAG------------------AGGTCCATAGTCTGTGGG--GAGAGAGGCAGGATGACATTCCTA---CCCATTTCACTCA-------------------CTGCGTGGATTAGGG-CCCCG-----ACTTCCCTGG------TGAGAAGCCA----------CAGGATGGCAGGGTAGG--------TAGG-------------------TGGGCCAA------------GCGGGCCCT--------TGGGAGCAGAGATAGTTAACTGCTGG----TGACATTTGACTTTTTTCTTTCACAGTCTTCTCGGGAGGTGGGGGGAGGAGTCTGTCTTGCAGATAAAGATGCTG--------------GCGGG------------TTTGAGGT---GCTGG--TGGGTGGGTGG---------------------------------GCTGCTGGGCTTACA-GTATCTATGG----TCCACAGTGTTCCACCACCTGTGGCCTGGGCGCCATCTGGAGGCTAGTGAGCTGCAGCTCTGGCAATGACGAGGACTGCACCCTCGCTAGCCGTCCCCAGCCTGCCCGCCATTGTCATCTGAGGCCCTGTGCTGCCTGGCGCACGGGCAACTGGAGTAAGGT-----------------AAGCAGG--------------------GAGCCCTGGAT-CCTGTGGCTGTGATTTGAAGACCAGCAGGGCAGG-GT-GAATATCATGCCACA-GTCTGTACTCTGATCCGGTCCTGTTCTCATCCCTCTTGGAGATCTTCATTCAGCATGGCCTGGCCCTGCTTGCGTTGCTGTACTTCCTCTGTGTTCGAACCACCCACCATTGGAC---TCTTCTT--ACCAGCTCA--------CCC--------TAGTAATTCCATCTGTTTTGTC-----------CCCTGGGTTTGCCACCTGGTGTTGAAGTC------------------TACTGGGACTCT--------TTGGTCTAGGCCAGA--------AGGTTTAAC-CCTGCTGTATGATAAACATCAT---GTTGCATTCATGTGCATAGA---------ATGTCTCTAT-GTGACTATTCTTTGCACTCCAGTGCTCTCGAAACTGTGGTGGAGGTTCCTCTACAAGGGATGTACAGTGTGTGGATACACGGGACCTCCGGCCACTGCGGCCCTTTCACTGCCAGCCCGGGCCTACCAAGCCACCCAACCGTCAGCTCTGTGGGACCCAGCCCTGCCTCCCCTGGTACACCTCCTCCTGGAGAGAGGTGAGGTTTGGGCCTGG--GGAAGTGGGGACTGAGGACACCCTTGGACCCCGGCTAT-ACTTGA-TGC-CTCTTTGTTCT---------TCCAGTGTTCCGAGGCTTGTGGTGGTGGTGAACAGCAGCGACTGGTGACATGTCCAGAGCCAGGGCTCTGTGAGGAGTC-GCTGAGACCCAACAACAGCAGGCCCTGCAACACCCACCCCTGCACACAGTGGGTGGTAGGGCCCTGGGGTCAGGTGAGCAGGGTTGCTTGTGGGGAGGAATTGGCAGCAACCCTTGGCAGATAGACCCTGGTC---CTTGGGCTTAGAAGGATGAGTTGTT--GT-GTGTGATGTGTGCTGG--TCTCTGGGGCCACTAAATATTC-AGTTGTGCCCTGATCAAG---------TCCTTGTAC------TTTGCCAGGGAATATCAGAT-AGAGGAAAAGTG-----GCCATG---
i mm10.chr9                      I 115 C 0
s canFam3.chr3                    58218234 1694 +  91889043 ---CACCAGGAAGGTGTG----GGGTGGCACGAAATGGAGGGTGGCCAG------GAGCCGCGTCC---------CTCATACTGCCGGACAGGGTGCCCCCT-GACAC-----CCTGCT--------------GGTGGGGAAGCCACCTC--CGTGGCTCCCAGGCC-----------------------CAGTAG--GGCCCCCTGGGCTCAGCCTGGCTCTCCTTGCCTGGCCCC----------------------TCCTACGTGGCCTCACCCTGCTCCTTTAGGGGCCG-GC---GAGTGTGTGAACTTG-ATGGCCAGAAACTGACTGTGTCCCTCTGCCCACCTGTGTCTTCCTATGG-----------------AAGTTCTG--------------TCTGGGCTGGGGAGGGACAGG----------CAGGGCTTA------------------------------------GCCAGGAGTCCAGTCAC-TCTCCCTAGGTGATTTTGGGGCGCAGTGAGCCCGGTCATGATGGTTGGGT------------------------------------CACCA-------------------CCTCTGTCCCCCGTGAGCCAGGACA----------TG----AGGTGTTTGAGGTTTTGTGTT-----------TGGGAGGTGGGTGGAGGGGCCCATTGCACAGATGGGTAAGGTGAGGTTCTGGCTCCAGCGGGTGCCCCCGCATTGCTGGCGG------------------------CCCGGCCGTGGGGCTGGGGGGGCGCGGGGATCTGCCC-GCCCTCACGG-CCTGTGCCCGGCCCCCAGTGCTCCACCACCTGCGGCCTGGGTGCTGTCTGGAGGCCCGTCCGCTGCAGCTCCGGCCGCGAAGAGGACTGTGCCCCCGCCGGCCGCCCCCAGCCTGCCCGCCGCTGCCACCTGAGGCCGTGTGCCGCCTGGCACGCGGGCAACTGGAGCAAGGTGCGTGA---------------------------GCCTCGGGGTGCAAGCTGGGCTGCCCAGTGCCC-----------ACTGCACGCTGGGTGGCGGACTCTGCGCTGC-----------------CATCCTGGGCT-----TGTCCTG----TCCAC--ACACCTGT-CCCGGGTTGGCCTGC-------CCTGCCCCTAGCACCTCTGCT-GCTGGC--CATGCCCTTTCTCTTGTACCTGCC-----ATGCCCCTCGGGATGGCATTGTCACTGACTGTTCCAG----TGGGGCCACCCTGGCTACA--------TGCCTGAAGCTGGCTGG--------TCTCCCCGGGGT------------------GGGTTGGG--------GGGTCCGATGCCCACACCGCCACC--CCTCGCAGGGCCGTGTGCGAGCAGGTGCAC---GGGGTCTGCTCACACTGCGCTC----CTTGCCCTGCAGTGCTCGCGTGGCTGCGGGGGAGGCTCCTCAGTGCGTGACGTGCAGTGTGTGGACACACAAGACCTCCGGCCACTGCGGCCCTTCCACTGCCAGCCAGGGCCCCCCATGCCGCCCACCCGCCGTCCCTGTGGGGTGCAGCCCTGCCTCAGCTGGTACATCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGCCCCGGGACAAGGTGG--GGGGGTGTCCTCAGACCCCGGCAGTACCCCGACCCCTTTCTCTGCCCATCCCGCTCTTCCAGTGCTCCGAGGCTTGTGGTGGTGGCCAGCAGGAACGTCTGGTGACCTGCCCAGAGCCAGGCCTCTGCGAAGAGGC-GTTGAGACCCAACAGCACGCGGCCCTGCAACACGCACCCCTGCACGCAATGGGTCGTGGGGCCCTGGGGCCAGGTGAGCAAGCCTGC---------GGACCAGGGAC------GGGCCCAGCGGCCACTGGGAAGTCCTCCG-TTCCCTCGAGAAGGCATCATCTGGTGTGCTATGTGCCAGGCTCTC--TGGTCACTGCAGATGTGGGTGGTGGCCAGACAAGGTCCCCACACTGCCGAAGCCTTGG-CCTGCTGGGGAGAGGGGGTTGAAAGGGAGTGGGTGGGTGCTGGGATG
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112811653 3213 - 170124641 I
e ponAbe2.chr15                   79937211   10 +  99152023 I

a score=1524760.000000
s hg38.chr15_KI270850v1_alt          40411 655 +    430880 tcagggaaggccttccgaggaggggtc-tggggttgagacccgagggaggagtcagtgatgccaaggacagggatcgaggggacagcaggtgtgaagt-ctgaggcaggaatgatgagcttggggagatcagggagcccagcaaaggcc--a--gcgGCAGAAGGGGGCAGAAGAGGGG---------CCTCGTAT-----------------GG-GCAGGACACCTT-CTGCTGGGCCTGTTTGGAACTGAGGGGTTCAGAAATCTCAGATTTGGGCCCTgagctgggtccgggagtcagctgggccagcgtttgagtct--gtccgactggctgctgagtgactctgggcaggttgctttgctt------------------tgctgggtca--gttttc----tcatctgtaaaattgggacgctttgggagaggagggtcaggaggattaaatggaggaacgcaacaaagcacagggc---------------c--gggcacagcacgacactggcacagactcagcacATGTTTAGGGCTTTC------AGACCTGCAC-----CTGTTAACAACAAAGCCTGG--CGGGCTGGG----CCCCGGCTGTGAAA-TTGTCTCCACCCCTCCTGCCCATGGGCTGCGGCAGGTCCTCT--GCCCTGTCCCTCGGGCACAGCGGTGTCTCGCCCACGTCTCTGCTCACTGCTGCATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC
s panTro4.chr15_GL392289_random      43008 657 -    187897 tcagggaaggccttccgaggaggcgtc-tggggtcgagacccgagggaggagtcagtgatgccaaggacagggatcgaggggacagcaggtgtgaagt-ctgaggcaggaatgatgagcttggggagatcagggagcccagcaaaggcc--a--acgGCAGAAGGGGGCAGAAGAGGGG---------CCTCGGAT-----------------GG-GCAGGACACCTT-CTGCTGGGCCTGTTTGCAACTGAGGGGTTCAGAAATGTCAGATTTGGGCCCTgagctgggtccgggagtcagctgggccagcgtttgagtctttgtccgactggctgctgagtgactctgggcaggttgctttgctt------------------tgctgggtca--gttttc----tcatctgtaaaattgggacgctttgggagaggagggtcaggaggattaaatggaggaacgcaacaaagcacagggc---------------c--gggcacagcacgacactggcacagactcagcacATGTTTAGGGCTTTC------AGACGTGCAC-----CTGTTAACAACAAAGCCTGG--CGGGCTGGG----CCCCAGCTGTGAAA-TTGTCTCCACCCCTCCTGCCCATGGGCTGCGGCAGGTCCTCT--GCCCTGTCCCTCGGGCACAGCGGTGTCTCGCCCACGTCTCTGCTCACTGCTGCATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14004 645 -     28805 tcagggaaggccttccgaggaggggtc-tggggttgagacctgagggaggagtcagtgatgccaaggacagggatcgaggggacagcaggtgtgaagt-ctgaggcaggaatgatgagcttagggggaccagggagcccagcaaaggcc--a--gCAGCAGAAGGGGGCGGAAGAGGGG---------CCTCGGAT-----------------GG-GCAGGACACCTT-CTGCTGGGCCTATTTGGAACTCAGGGGTTCAGAAATCTCAGATTTGGGCCCTgagctgggccctggagtcggctgggccagcgtttgagtctttgtcccactggctgctgagtgactctgggcaggttgctttgctt------------------tgctgggtcactgttttc----tcatctgtaaaattggaacagcttaggagaggagggtcgggaggattaaatgaaggaatgcaacgaagcacagggc---------------t--gggcacagcacgacaccggcacagactcagtgcACGTTTATGG--------------------------CTGATAACAATGAAGCCTGG--CAGGCTGGG----CCCTGGCTGTGAAACCTGTCTCCTCTCCTCCTGCCCATGGGCTGCGGCAGGTCCTCT--CCCCTGTCCCTTGGGCACAGTGGTGTCTCGTCCACATCTCTGCCCACTGCTGCATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112814866 656 - 170124641 tcagggaaggCCTTACAAGGAGGGGTC-TGGGGTTGAGACCCGAGGGAGGAGTCAGTGATGCCAAGGACAAGGATCAAGGGGATAGCAGGTGTGAAGT-CTGAGGTGGGAATGACGAGCTTGGGGTTATAAGGGAGCCCAGCAAAGGCC--A--GCGGCAGAAGGGGGCGGAAGAGGGC---------CCTCAGAT-----------------GG-GCAGGACACCTT-CTGCCAGGCCTGTTTGGAACTCAGGTGTTCAGGCGTCTCAGATTTGGGCCCTGAACTgggtcctggagtcagctgggccagcatttgagtctttgtcccactggctgctgagtgactctgggcaggttgctttgcctgaacagactgcccagtgactctgggtcactgttttc----tcatctgtaaaattggaacagcttaggagacaagggtcgggaggattaaatgaaggatcgtaatgaggcacaggac---------------c--aggcacagcacaacactggcacaGA--CAGCGCACATTTAGGA--------------------------CTGATAACAATGAAGCCTGG--TGGGCTGGG----CCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCCATGGGCTGCTGCAGGTCCTCT--GTC-----CCTCAGGCACAGCGTTGTCTTGCCCACGTCTCTGCCCACTGCTGCATCAGGGCTCCATCCTGGGGCCCCTGCCCAGGCCTC
i rheMac3.chr7                   I 3213 C 0
s macFas5.chr7                    61598961 656 + 171882078 TCAGGGAAGGCCTTACAAGGAGGGGTC-TGGGGTTGAGACCCGAGGGAGGAGTCAGTGATGCCAAGGACAAGGATCAAGGGGATAGCAGGTGTGAAGT-CTGAGGTGGGAATGACGAGCTTGGAGTTATAAGGGAGCCCAGCAAAGGCC--A--GTGGCAGAAGGGGGTGGAAGAGGGG---------CCTCAGAT-----------------GG-GCAAGACACCTT-CTGCCAGGCCTGTTTGGAACTCAGGTGTTCAGGCGTCTCAGATTTGGGCCCTGAACTgggtcctggagtcagctgggccagcatttgagtctttgtcccactggctgctgagtgactctgggcaggttgctttgcctgaacagactgcccagtgactctgggtcactgttttc----tcatctgtaaaattggaacagcttaggagacaagggtcgggaggattaaatgaaggatcgtaatgaggcacaggac---------------c--aggcacagcacaacactggcacaGA--CAGCGCACGTTTAGGA--------------------------CTGATAACAATGAAGCCTGG--TGGGCTGGG----CCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCCATGGGCTGCTGCAGGTCCTCT--GTC-----CCTCAGGCACAGCGTTGTCTTGCCCACGTCTCTGCCCACTGCTGCGTCAGGGCTCCATCCTGGGGCCCCTGCCCAGGCCTC
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108929070 660 - 162156779 TCAGGGAAGGCCTTCCAAGGAGGGGTC-TGGGGTTGAGACCCGAGGGAGGAGTCAGTGATGCCAAGGACAGGGATCAAGGGGATAGCAGGTgtgaagt-ctgaggcaggaatgaCGAGCTTGGGGGTATCAGGGAGCCCAGCAAAGGCC--A--GCGGCAGAAGGGGGCAGAAGAGGGC---------CCTCAGAT-----------------GG-GCAGGACACCTT-CTGCCGGGCCTGTTTGGAACTCAGGGGTTCAGGCGTCTCAGATTTGGGCCCTGAACTGGGTCCTGGAGTCAGCTGGGCCAGCGTTTGAGTCTTTGTCCCACTGGCTGCTGAGTGACTCTGGGCAGGTTGCTTTGCTT------------------TGCTAGGTCactgttttt----tcatctgtaaaattgggacagtttgggagaggagggttgggaagattaaatgaacGAACACAACAaagcacagggc---------------t--gggcacagcacGACACTGGCACAGACTCAGCGCATGTTTAGGGCTTTC------AGACCCACAC-----CTGATAACAACGAAGCCTGT--TGGGCTGGG----CCCCGGCTGTGAAACCTGTCTCCTCCCTTCCTGCCCATGGGCTGCGGCAGGTCCTCT--GCCCTGTTCCTCGGGCACAGCGGTGTCTCGCCCACATCTCTGCCCACCGCTGCATCAGGGCTCCATCCCGGGACCCCTGCCCAGGCCTC
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1327059 656 +  24206276 TCAGGGAAGGCCTTACAAGGAGGGGTC-TGGGGTTGAGACCCGAGGGAGGAGTCAGTGATGCCAAGGACAGGGATCAAGGGGATAGCAGGTATGAAGT-CTGAGGTGGGAATGACGAGCTTGGGGTTATAAGGGAGCCCAGCAAAGGCC--A--GCGGCAGAAGGGGGTGGAAGAGGGG---------CCTCAGAT-----------------GG-GCAGGACACCTT-CTGCCAGGCCTGTTTGGAACTCAGGTGTTCAGGCATCTCAGATTTGGGCCCTGAACTgggtcctggagtcagctgggccagcatttgagtctttgtcccactggctgctgagtgactctgggcaggttgctttacctgaacagactgcccagtgactctgggtcactgttttc----tcatctgtaaaactggaacagcttaggagacaagggtcgggaggattaaatgaaggattgtaatgaggcacaggac---------------c--aggcacaGCACAACACTGGCACAGA--CAGCGCACGTTTAGGA--------------------------CTGATAACAATGAAGCCTGG--TGGGCTGGG----CCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCCATGGGCTGCTGCAGGTCCTCT--GTC-----CCTCAGGCACAGCGTTGTCTTGCCCACGTCTCTGCCCACTGCTGGGTCAGGGCTCCATCCTGGGGCCCCTGCCCAGGCCTC
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113753439 673 - 132174527 TCAGGGAAGGCCTTCCCAGGAGGGGCC-TAGGGTTGAGACCCGAGGGAGGAGTCAGTGATGCCAAGAACAGGGATAAAAGGGACAGTAGGTGTGAAGT-CTGAGGCAGGAATGACAGGCTTGGGGCGATCAGGGAGCCTGGCAAAGGCC--A--GCGGCAGAAGGGGGCGGAAGAGGAG---------CCTTGGGT-----------------GG-GCAGGATACCTT-CTGCCGGGTCTGTTTGGAACCAAGGGGGTCAGAAATCTCAGCTCTGGGCCCTgagctgggccctggagtcagctgggccagcgttcaagtctttgtcccactggctgctgagtgactctgggcaggttgctttgcct------------------ctctgggtcactgttttc----tcatctgtaatacgggcatagtttgggagaggaggggcgggaggattaaataaagtaacgggatgaagcacagggctgggcacagactcagt--gGGCACAGCACGACACTGGCACAGACTTGGAGCATGTTTAGGGCTTTC------AGACCCGCAT-----CTGATAACAACGAAGCCTGG--CGGGCTGGG----CCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCTGTGGGCTG-GGCAGGTCCTCG--GCCCCATCCCTTGGGCACAGCGGTGTCTCGCCCATGTCTCTGCCCGCTGCTGAATTAGGGCTCCATCCTGGGG-CTCTGCCCAGGTCTC
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90196267 536 + 124595110 -cggggaaagtcctctgaggagaggactttgggttgacatctaa---aggcgtcagtgatgctaaagtgagggataaagagaacagcaagtgccgagc-ctgaggcaggaatgac------ggggtgttcagggaatggagcaaagacc--gctctggcagaagggagtAG-AGAGGCC---------CCAcagggcagggcagggcagggcagg-gcagggcagCTTGCTgctgagcctactgggtgctgactggttcaagaagctca--------------------------------------------ttgggtgcttgacccactggctgctgaatgactctgggcagg-tgctttgcct------------------tgctgggctgttttttcccccttcatctttaaattgggggCAGCAT-GGAGCGAGGAGTGGACAAATCTGAACGG-----------------CAGAGC-----------------------CTGTATTGTGCCAGCAGAGA------------TTAAAC--------------------------CTGAGAAC-----AGGCTGACTCAGGGTGGG----GACCACACCTGAGACACGCTTTCTCTCT--CTGCT----GGTAGCCACACCTTCTGT--GTC-----TCATGGGTACCATGGTGCCTCATCTCAGGGTCTGCCTTCT----------------------------CTGTGCAGGCATC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58219928 506 +  91889043 TCAGGGA----------------GGCC-TGC----------------AGGACTCGGTGGTTCGAAGTAGAGGTCcaaggggaacagcatgtgcaaagtcctggggcagaaaggaaagatctgagggt-ttagggaacagagcagaggcttga--gtgacagaaagg-gtggaggagggggcagcgAGCCCTCAGGG-----------------GGCGCAAGATGCCTTCCTGCCA--CCTGCT-ggagctacaaggtccaggaatccca------------------------------------------------gtccttgcccc-ctggctgctgagtggctctgggcaggtggcctggcct------------------tgctgggcctctggtttc----tcatgtgcaagacgggggt--------------------gtgggaatgaatagagcagcgcagtgaggcgcccagc---------------ccagagcctggcacCATG-TGGCAGAGATTAAACCTACTTCTAGAGCTTTTTTTAAAAAAAGTACATCCTAATTGTTAAGAATAGAGCCTGACTCAGGCTGGAGGGCCTCTGGTTGAGGAACCTG-----------------CAGGGGCTGTGGCAGGTCCTCTCAGCC-----TCTCGGGT--------------------------------------------------------GCTCCTG----GGCCTC
i canFam3.chr3                   C 0 I 8
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=156278.000000
s hg38.chr15_KI270850v1_alt          41066 77 +    430880 TCAGTCATGTCCCGTGTGAGGGGCTCACTGCCCTGCCGCCCCAAGGGCTGT-CCCATGGTTCTCATGCCCCTTCCCTC
s panTro4.chr15_GL392289_random      43665 77 -    187897 TCAGGCATGTCCCGTGTGAGGGGCTCACTGCCCTGCCGCCCCAAGGGCTGT-CCCATGGTTCTCATGCCCCTTCCCTC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14649 77 -     28805 TCAGGCATGTCCCATGTGAGGGGCTCACTGCCCTGCAGCCCCGAGGGCTGT-CCCACGATTCTCATGCCCCTCCCCTC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112815522 77 - 170124641 TCAGGTGTGTCCCATGTGAGGGGCTCACTGCCCAGGAGCCCTGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61599617 77 + 171882078 TCAGGTGTGTCCCGTGTGAGGGGCTCACTGCCCAGGAGCCCTGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108929730 77 - 162156779 TCAGGCATGTCCCTGGTGAGGGGCTCACTGCCCAGGAACCCCGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1327715 77 +  24206276 TCAGGTGTGTCCCGTGTGAGGGGCTCACTGCCCAGGAGCCCTGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113754112 78 - 132174527 TCGGGCATGTCCTGTGCGAGGGGCTTGCTGCCCTGCAGCCTCGAAGGCTGTCCCCACTGTTCTCATGGCCCTCCCCAC
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90196803 44 + 124595110 CTGTGTGTGTTTCGCAT---------------------CTCC--------T-CTTACTTGTATCTTGCC----CTCAT
i mm10.chr9                      C 0 C 0
e canFam3.chr3                    58220434  8 +  91889043 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=1284239.000000
s hg38.chr15_KI270850v1_alt          41143 512 +    430880 TGCAGCAGCCGATCCCACAAGTGAGAGTGGGGTTCCAGCACCAAGTGGGCTCTAGGAATGGGAACAGGTCCT-CCAGGAGGCACTGAGAGGGCGGCTGGGAGCAAGGGCAGGCCAGTCAGGCACAGGGCGCAGGGACGGCTTCCCAGAGGAGGTGTCCCTG----------------CCCCCACTGCTAGGGCTGGCC-CTGGAGACACTCATTCCTCCCCTGCTC-CCCCCAGTGCTCAGGCCCCTGTGGTGGTGGCATCCAGTGGTCACACACTGGTCAAGTGTGTCAACACCCAGACGGGGCTACCCGAGGAAGACAGTGACCAGTGTGGCCACGAGGCCTGGCCTTGTGAGCTCCCGGCTGTGTGGCACCGAGGATTGTGAGCCCGTCGAGCCTCCCCGTGA--GTCCCCCGACCC-----------------------CAAGCTCT--CTG-CTGAAGTGAGGTGGGGC--GGGAAGGGTGATGG---------GGAAATTGGGTCTTCAAACCATTGCACCCACGGCACCGGCTGGCTCCATCTGTAGTCTGGGCTCAGGAGCC
s panTro4.chr15_GL392289_random      43742 512 -    187897 TGCAGCAGCCAATCCCACAAGTGAGAGTGGGGTTCCAGCACCAAGTGGGCTCTAGGAATGGGAACAGGTCCT-CCAGGAGGCACTGAGAGGGCGGCTGGGAGCAGGGGCAGGCCAGTCAGGCACGGGGCGCAGGGACGGCTTCCCAGAGGAGGTGTCCCTG----------------CCCCCACTGCTAGGGCTGGCC-CTGGAGACACTCATTCCTCCCCTGCTC-CCCCCAGTGCTCAGGCCCCTGTGGTGGTGGCATCCAGTGGTCACACACTGGTCAAGTGTGTCAACACCCAGACGGGGCTACCCGAGGAAGACAGTGACCAGTGTGGCCACGAGGCCTGGCCTTGTGAGCTCCCGGCTGTGTGGCACCGAGGATTGTGAGCCCGTCGAGCCTCCCCGTGA--GTCCCCCGACCC-----------------------CAAGCTCT--CTG-CTGAAGTGAGGTGGGGC--GGGAAGGGTGATGG---------GGAAATTGGGTCTTCAAACCATTGCACCCACGGCACCGGCTGGCTCCATCTGTAGTCTGGGCTCATGAGCC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14726 500 -     28805 TGCAGGAGCTGATTCCACAAATGAGAGTGGGGTTCCAGCACCAAGAGGGCTCTGGGAATGGGACCAGATCCT-CCAGGAGGCACTGAGAGGGCAGCTGGGAGCAAGGACAGGCCAGTCAGGCA-------CAGGGACGGCTTCCCAGAGGAGGTGTCCCTG----------------CCCCCACTGCTAGGGCTGGCC-CTAGAGACACTCATTCCTCCCCTGCTC-CCCCCAGTGCTCAGCCCCCTGTGGCGGTGGTGTCCAGC-GTCGC---CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCTGAGGAAGACAGTGACCAGTGTGGCCACGAGGCCTGGCC-TGAGAGCTCCCGGCCATGTGGCACTGAGGATTGTGAGCCCGTCAAGCCTCCCCGTGA--GTCCCCTGACCC-----------------------CAGGCTCC--CTG-CTGAAGTGAGGTGGGAT--GGGGAGGGTGACAG---------GGAAGTGGGGTCGTGAAACCATTGCACCCACAGCACCGGCTAGCTCCATCTGTAGTCTGGGCTCAGGAGCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112815599 506 - 170124641 TGCAGGAGCCGATCCCACAAGTGAGAGTGGGGTTCCAGCACCAAGTGGGCTCTAGGAGTGGGACCAGGTCCT-CCAGGAGGCACTGAGGGGGCGGCTGGGAGCAAGGGCAGGCCTGGCAGGCACAGGGC-TAGGGATGGCTTCCCAGAGGAGGTGTCACTG----------------TCCCCACTGCTAGGGCTGGCC-CTGGAGAGACTCATTCCTCCCCCACTC-TCCCCAGTGCTCAGCCCCCTGTGGCAGTGGTGTCCAGC-GGTGC---CTGATCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGCGACCAGTGTGGCCACGAGGCCTGGCC-TGAGAGCTCCCAGCCGTGTGGCACCGAGGATTGTGAGCCTGTCGAGCCTCACCGTGA--GTCCCCTGACCC-----------------------CAGGATCT--CTG-CTGAAGTGAGGTGGGGC--CGGGAGGGCGATGG---------GGAAATGGGGTCGTCAAACTATTGCATCCACGGCACCGGCTGGCTCCATCTGTAGTCTAGGCTCAGGAGCC
i rheMac3.chr7                   C 0 I 185
s macFas5.chr7                    61599694 506 + 171882078 TGCAGGAGCCGATCCCACAAGTGAGAGTGGGGTTCCAGCACCAAGTGGGCTCTAGGGGTGGGACCAGGTCCT-CCAGGAGGCACTGAGGGGGCGGCTGGGAGCAAGGGCAGGCCTGGCAGGCACAGGGC-TAGGGACGGCTTCCCAGAGGAGGTGTCACTG----------------TCCCCACTGCTAGGGCTGGCC-CTGGAGAGACTCATTCCTCCCCCACTC-TCCCCAGTGCTCAGCCCCCTGTGGCAGTGGTGTCCAGC-GGTGC---CTGATCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGCGACCAGTGTGGCCACGAGGCCTGGCC-TGAGAGCTCCCAGCCGTGTGGCACCGAGGATTGTGAGCCTGTCGAGCCTCACCGTGA--GTCCCCTGACCC-----------------------CAGGATCT--CTG-CTGAAGTGAGGTGGGGC--CGGGAGGGCGATGG---------GGAAATGGGGTCGTCAAACTATTGCATCCACGGCACCGGCTGGCTCCATCTGTAGTCTGGGCTCAGGAGCC
i macFas5.chr7                   C 0 I 8
s papAnu2.chr7                   108929807 478 - 162156779 TGCAGGAGCCGATCCCACAAGTGAGAGTGGGGTTCCAGCACCAAGTGGGCTCTAGGAGTGGGACCAGGTCCT-CCAGGAGGCACTGAGGGGGCGGCTGGGAGCAAGGGCAGGCCTGTCAGGCACAGGGCACAGGGatggcttcccagaggaggtgtcACTG----------------TCCCCATTGTTAGGACTGGCC-CCGGAGAAACTCATTCCTCCCCCACTC-CCCGCAGTGCTCAGCCCCCTGTGGTGGTGGCGTCCAGC-GGCGC---CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCAGAGGAAGACAGTGACCAGTGTGGTCACGAGGCCTGGCC-TGAGAGCTCCCGGCCATGTGGCACCGAGGATTGTGAGCCCGTCGAGCTTCCCCGTGA--GTCCCCTGACCC-----------------------CAGGATCT--CTA-CTGAAGTGAGGTGGGGC--GGGGAGGGCGATGG---------GGAAATGGGGTCGTCAAACCATTGC-----------------------------GTCTGGGCTCAGGAGCC
i papAnu2.chr7                   C 0 I 8
s chlSab2.chr29                    1327792 507 +  24206276 TTCAGGAGCCGATCCCACAAGTGAGAGTGGGGTTCCAGCACCAAGTGGGTTCTAGGGGTGGGACCAGGTCCT-CCAGGAGGCACTGAGGgggcggctgggagcaagggcaggcctgtcaggcacagggcgcagggATGGCTTCCCAGAGGAGGTGTCACTG----------------CCCCCACTGCTAGGGCTGGCC-CTGGAGAGACTCATTCCTCCCCCACTC-TCCCCAGTGCTCAGCCCCCTGTGGCAGTGGTGTCCAGC-GGTGC---CTGATCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGCGACCAGTGTGGCCACGAGGCCTGGCC-TGAGAGCTCCCAGCCATGTGGCACCAAGGATTGTGAGCCTGTCAAGCCTCACTGTGA--GTCCCCTGACCC-----------------------CAGGATCT--CTG-CTGAAGTGAGGTGGGGC--GGGGAGGGCGATGG---------GGAAATGGGGTCGTCAAACCATTGCATCCACGGCACCGGCTGGCTCCATCTGTAGTCTGGGCTCAGGAGCC
i chlSab2.chr29                  C 0 I 8
s calJac3.chr10                  113754190 506 - 132174527 TGCAGGAGACGATCCCACAAATGCGAGTGGGATTCAAGTACCGAGTGGGCTCTAGGCATGGGACCAGGCCTTCCCAGGAGGCAGTGAGGGTGGGGCTGGGAGCAGGGGCAGGCCAGTCAGGCACAGGGCACAGGGATGGCTTCCCAGTGGAGGTGTCACTG----------------CCCCTGATGCTAAGGTGGCCC-AGGGAGACGCTTCTTCCTCCCC-ACTC-CCCACAGTGCTCAGCACCCTGTGGTGGGGGCGTCCAGC-GGCGC---CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGTGACCAGTGTGGCCATGAGGCCTGGCC-CGAGAGCTCCCAGCCGTGTGGCATCGAGGACTGCGAGCCCATCCAGCCGCCCCGTGA--GTCCCTGAACTC-----------------------CTGGCTCT--CTG-CTAAAGTGAGGTGGGGT--GGGGAGGGTAATGG---------GG-AGTGGGATTGTCAAACCATCGAAGCCACGGCACCGGCTGGCTCCATCTGTAGTCTGGGCTCAGGAGCC
i calJac3.chr10                  C 0 I 8
s mm10.chr9                       90196847 425 + 124595110 TGCAAGAACAGATACCCCCAGTGACAGTGGGG----------AGGTCAGCACTAGG--------------CT-CTAGT----------------------------------------------------CAGGGATGGCTTCCTGGAGAGGGTGGTACTGTCCAGTGATGGGCAGTCCCCGACTGTGATGGCTGGTC-CTGGAGACGTTCTCTCCTCTCTC---C-TATGCAGTGCTCAGCCCCCTGCGGTGGTGGTGTTCAGC-GGCGT---CTGGTCAGATGTGTGAACACTCAGACCGGCTTGGCAGAGGAAGACAGTGACCTGTGTAGCCATGAGGCGTGGCC-TGAGAGCTCACGGCCATGTGCCACTGAGGACTGTGAACTGGTTGAACCCCCACGTGAGTGTCTCCTTACT--------------------------------------CTTAGGGATGGTGGGATAAGGGGAGGATGGCTA---------GGAACTAGAG------AATCGTCGGTCCTAGAACAGCTGCTG---TTGTTTACAGTT--GGCTCAAACCCC
i mm10.chr9                      C 0 I 12
s canFam3.chr3                    58220442 479 +  91889043 TGCAGC------TCCTGCAGGTGAG---------------CCTGGTAGGCTCTGAGAG---------------GCAGGGGGCAACGAGAA---GCCTCAGAAC-TGGACATGC---TCCTGGCCAGGG--CATGGGCAGCTGCCC--CTGGGGTGCCCTTT----------------CCCC------------TGGCCACAGGGGGCCCTAACCTCTCCCCCACACATACACAGTGCTCGGCCCCCTGTGGTGGTGGTGTGCAGC-GGCGC---CTGGTCAGGTGTGTCAACACCCAGACTGGACTGCCCGAGGAGGACAGTGAGCAGTGTAGCCACGAGGCCTGGCC-CGAGAGCTCCCGGCCATGCGGCACCCAGGACTGTGACCTCAGCGAGGCCCCACGTGA--GTGCTGGAGGTCGGGGCAGGGGGGATGGCAGGAGACAGGAGCCAGCTGCCCTGGGTGATCCGTGAT--TGTGAGGCTGCTGGATGCTGTGCAGAAGCTGGGTTGT------GTCAGGGCCAGAGCAGAGGGTGTCCTGCCCTGCAGAC-ACTCCCAGACACC
i canFam3.chr3                   I 8 C 0
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=702268.000000
s hg38.chr15_KI270850v1_alt          41655 441 +    430880 --------------ACTG-AAAATCCTGATGCCACAGGATCCCATGCTGGAGGCTTGGCT--GTGCTGGGAGTCAGTCAAGAGA-AGTCCCAGCTACAC--------------AA-CATCCC---GCAGGCAGC--TTTCTGACCTCCGGTGAGTAGAGGGAGTGGCcttggcccctgattt--gctgtgtgaacctgggtaagctcttt-cccctctgggtctcagtattcc-catagtgagaccagggATGTCCCTGAAGCTGTGTGAAAACTGGGCCTGGGTGAGTCCCTGTCCCCTCCCCAGCCCTAGCCTGTCCATTCCCTGGCCAGAGGACTGCCTAGAGTGAGCAATGGAACCACAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGCTAA-TCCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGGTC---CTGGTGGAAGGGCCTGAGCTAGAGGTGGTTCTGGATATCCC--AACCCCCCACCTCC
s panTro4.chr15_GL392289_random      44254 442 -    187897 --------------ACTGGAAAATCCTGATGCCACAGGATCCCATGCTGGAGGCTGGGCT--GTGCTGGGAGTCAGTCAAGAGG-AGTCCCAGCTACAC--------------AA-CATCCC---GCAGGCAGC--TTTCTGACCTCCGGTGAGTAGAGGGAGTGGCcttggcccctgattt--gctgtgtgaacctgggtaagctcttt-cccctctgggtctcagtcttcc-cacagtgagaccagggATGTCCCTGAAGCTGTGTGAAAACTGGGCCTGGGTGAGTCCCTGTCCCCTCCCCAGCCCTGGCCTGTCCATTCCCTGGCCAGAGGACTGCCTAGAGTGAGCAATGGAACCACAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGCTAA-TCCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGGTC---CTGGTGGAAGGGCTTGAGCTAGAGGTGGTTCTGGATATCCC--ACCCCCCCGCCTCC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15226 341 -     28805 --------------ACTG-AAAATCCTGATGCCACAGGATGCCATGCTGGAGGCTGGGCT--GTGCTGGGAGTCAGTCAAGGGG-AGTCCCAGCCACAC--------------AA-CACCCC---ACAGGCAGC--TATCTGGCCTCAGGGGAGAAGAGGGAGTGgccctggcccctgagtt--gctgtgtgaacctgggtaagctcttt-ctcctctgggtctcagtcttcc-caCAGTGAGGCCAGGCATGGCCCTGAGGCTGTGTGAAAGCTGGGCCTGGGTGAgtccctg-----tccttagccctggcctgtccattccctggccAGAGGACTGCCTAGAGTGAGCAATGGAACCGCAGGAAG-GGCCTCCCT---------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTGCCCCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61600208 432 + 171882078 --------------ACTG-AAAATCCTGATGCCACAGGATGCCATGCCGGAGGCTGGGCT--GTGCTGGGAGTCAGTCAAGGGG-AGTCCCAGTCACAC--------------AA-CATCCC---GCAGGCAGC--TGTCTGACCTCGGGGGAGTAGAGGGAGTGgccctggcacctgattt--gctgtgtgaacctgggtaagctcttt-cccctctgggtctctgtcttcc-catagtgagaccagggATGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAGTCCCTG-----TCCCCAGCCCTGGCCTGTCCATTCCCCGGCCAGAGGACTGCCTAGAGTGAGCAATGGAATCGCAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGATAA-TCCAAGTGGTGGGGGGTTTCCTGGCCAGCTGGGTC---CTGGTGGAAGGGCCTGAGCTAGAGGTGGTTCTCCACA------ACCCCGCTGCTCAC
i macFas5.chr7                   I 8 I 418
s papAnu2.chr7                   108930293 482 - 162156779 --------------ACTG-AAAATCCTGATGCCACAGGATGCCATGCTGGAGGCTGGGCT--GTGCTGGGAGTCAGTCAAGGGG-AGTCCCAGTCATAC--------------AA-CATCCC---GCAGGCAGC--TGTCTGACCTCGGGGGAGTAGAGGGAGTGGCCCTGGCCCCTGATTT--GCTGTGTGAACCTGGGTAAGCTCTTT-CCCCTCTGGGTCTCAGTCTT---CACAGTGAGACCAGGGATGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAGTCCCTG-----TCCCTAGCCCTGGCCTGTCTATTCCCTGGCCAGAGGACTGCCTAGAGTGAGCAATGGAGCCGCAGGAAG-GGCCTCCCTTCCAGGGCCCTGCTGAGGAGGTAATGGGGTTTGAGGCAGGAAGGGCCTCCCTTCCAGGGTTCTGCTAA-TCCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGGTC---CTGGTGGAAGGGCCTGAGCTAGAGGTGGTTCTGCACA------ACCCCGCCGCTGcc
i papAnu2.chr7                   I 8 I 46
s chlSab2.chr29                    1328307 436 +  24206276 --------------ACTG-AAAATCCTGATGCCACAGGATGCCATGCCGGAGGCTGGGCT--GTGCTGGGAGTCAGTCAAGGGG-AGTCCCAGTCACAC--------------AA-CATCCC---GAAGGCAGC--TGTCTGACCTCGGGGGAGTAGAGGGAGTGgccctggcacctgattt--gctgtgtgaacctgggtaagcttttt-cccctctgggtctctgtcttcc-catagtgagaccagggATGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAGTCCCTG-----TCCCCAGCCCTGGCCTGTCCATTCCCCAGCCAGAGGACTGCCTAGAGTGAGCAATGGAACCGCAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGATAA-TCCAAGTGGTGGGGGGTTTCCTGGCCAGCTGAGTC---CTGGTGGAAGGGCCTGAGCTAGAGGTGGTTCTGGATACCCC--ACCCCCCCGCCTAC
i chlSab2.chr29                  I 8 I 16
s calJac3.chr10                  113754704 427 - 132174527 --------------ACTG-AGAATCCTGAGGCCACAGGATGCCATACTCAAGCCTGAGCT--GTGCTGGGAGTTGGCCCGGAG---GCCCCAGCCACAT--------------GA-TACCCT---GCTGATAGA--TGTCTGGCCTCGGGGGAGGAGAGGGAGAGGCCCTGGCCCCTGAGCT--GCTGTGTGAACCTGCATAAGCTCTTT-C-CCTCTGGGTCTCAGTCTTCC-CATAGTGAGGCCGGGGATGTCCCTGAGGCTGTGTGAAAGCTGGGCCTGGGTGAGGCCGGG-----TCCCCAGCCCTGGCCTGT---TTTCCCTGCCAGAGGGCTACCTAGAGTGAGCAGTGGAACTGCAGGGAG-GGCCTCCCTCCCAGGGTC----------------------------------------------------CTGCTAG-TCCCAGCGGCGGGGGGTTTCCTGGCCAGCTGTGTC---CTGGCAGAAGGGCCTGAGCCAAAG--TGGTCTGGACACCCTGACCCCTGCTGCT---
i calJac3.chr10                  I 8 C 0
s mm10.chr9                       90197284 347 + 124595110 --------------ACTG-G-------GAGGCCACAGGGTGCCA------AGGTC---CT--AAACTGGGACTCAGCCAAGGGG-AATCCCAAAGATTC--------------AAGCATCCT---GTAGGCAGC--TTTGGTAGCCTCGGGAAGTGGAAGGAGC--------CTCCTGACTCCAGCAGTG---------GCAAGCTTTTC-TCCCTTGGGGTCTTAGTC--CC-CACAGTGAAG--GGAGATGTCCTTG-GGCTGTGGGCA------------------------------------------CTGCCTATT-CCTAGGAGGATAACTGTCCAGAGGTGGCAGTGG-GCCACAGGAAG-GA-CTCTTTCCCAGGGTG----------------------------------------------------GTGTTGC-TTC------TGCTGTGTTTCCTGGCCAGCTGGGCCATTATGGAGGAAAGGTCTGAGCCAGAGGTAGCTCTGGAAATC----ACCTC---------
i mm10.chr9                      I 12 C 0
s canFam3.chr3                    58220921 413 +  91889043 CCTAGGCACCCCCTACGC-AACCTCCAGATACCCCAGG----CACCCTGCAGACACCTCCAGGCACCCGCAGTCACCCAAGGAACCCCCCCAGGCACCCTGCAGATACTCTCAGG-CACCCCCAGGCAGGCAGCCTTCTCTAGTGCAGAAACAGGGGAGGCAGCAGActtggcccct-agtt--gccgtgtgacctcgagcaagccccttgtcccccagggtctcagtGAGCCGCCCAGTGAGGCCAGG-----------------------------CCTGGGTGCGCCTCCG-----TCTCCAGCTCTG--------------CAGGAGGAGGAGTGCCCAGAGTGTGTGCTGCAGCCGCAGGAAGCGGCCTCCCTTCCAGGGTC----------------------------------------------------CTGCTGGCTGCCTGTGGCCAGCTGCTTCCTGGCCAGCTGTGTCCTCCTGGAGGAAGGGCCCGAGCCAGAGGTGGCAGTGGACA--------------------
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112816105 185 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=180.000000
s hg38.chr15_KI270850v1_alt          42096 1 +    430880 A
s panTro4.chr15_GL392289_random      44696 1 -    187897 A
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15567 1 -     28805 A
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s calJac3.chr10                  113755131 1 - 132174527 G
i calJac3.chr10                  C 0 C 0
e mm10.chr9                       90197631 0 + 124595110 C
e canFam3.chr3                    58221334 0 +  91889043 C
e chlSab2.chr29                    1328743 16 +  24206276 I
e papAnu2.chr7                   108930775 46 - 162156779 I
e macFas5.chr7                    61600640 418 + 171882078 I
e rheMac3.chr7                   112816105 185 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=255023.000000
s hg38.chr15_KI270850v1_alt          42097 142 +    430880 acacacacacacacacactcacacac--------------------------------------------------------TTCCTGCAGCCCCAGCTGCTCTCAgcagtgctgagggcaggaaatggggtggccctggagtgtcacctgggctcccctcaccagctgtgtggccttgggctccatttccctctcag
s panTro4.chr15_GL392289_random      44697 194 -    187897 acacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca----cacacactcacacacacTTCCTGCAGCCCCAGCTGCTCTCAGCAGTGCTgagggcaggaaatggggtggccctggagtgtcacctgggctcccctcaccagctgtgtggccttgggctccatttccctctcag
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15568 192 -     28805 acacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaGAGTCATACACTTCC------TTCCTGCAGTCCCAGCTGCTCCCAGCAGTGCTGAGGGCAGGAAATGGGGTGGCCCTGGAGTGTCACCTGGGATcccctcgccagctgtgtgaccttgggctccatttccctctcag
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61601058 145 + 171882078 ACTCACACACACACACACTCACACAC----------------------------------------------TTCC------TTCCTG-AGTCCCAGCCGCTCTCAGCAGTGCTGATGGCAGGAAACAGGGTGGCCCTGGAGTCTCACCTAGGCTCCCCTCACCAGCTGAGTGGCTTTGGGCTCCATTTCCCTCTCAG
i macFas5.chr7                   I 418 C 0
s papAnu2.chr7                   108930821 146 - 162156779 acacacacacacatacactcatacac----------------------------------------------TTCc------ttcctgcagccccagctgctcTCAGCAGTGCTGATGGCAGGAAACGTGGTGGCCCTGGAGTGTCACCTAGGCTCCTTTcgccagctgtgtggccttgggctcCATTTCCCTCTCAG
i papAnu2.chr7                   I 46 C 0
s chlSab2.chr29                    1328759 146 +  24206276 gcacccacacacacacactcacacac----------------------------------------------TTCC------TTCCTGAAATCCCAGCCGCTCTCAGCAGTGCTGATGGCAGGAAACAGGGTGGCCCTGGAGTCTCACCTAGGCTCCCCTCACCAGCTGAGTGGCTTTGGGCTCCATTTCCCTCTCAG
i chlSab2.chr29                  I 16 C 0
s calJac3.chr10                  113755132 173 - 132174527 ACACACACACACACACActctctctc----------------tctctctctctttctctctctttctctctcttCC------TTCCTGCAGCCCCAGCTGCTCCCAGCAGTGCTgagtgcaggaaacc--gtggccctggagtctcacctgggctcc-ctcgccagctgtgtggccttgggctccattcccctgtcag
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90197631 102 + 124595110 ---------------------------------------------------------------------------C------TTCCTGAAGCTCCAGCTGTCCCCAGCAGTGCCGAACACAGGAAACTGTGTGGCCCTTGAGTCACACCTGGGTACCT---------------GTCTCGGGCTCTGTTTCTCTATCTG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58221334  98 +  91889043 ----------------------------------------------------------------------------------------------CAGCTGCCCTCGG-GGCGCTAAGCACAGGAAGC----TGGCCCTGGAGCCACACCTGGGCGCC-CTCACCAGCTGGGTGGCCGTGGGCTCCATGTCCCTGTCTG
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112816105 185 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=69398.000000
s hg38.chr15_KI270850v1_alt          42239 28 +    430880 ggccttcatgtgc---t---gaataaaggggctg
s panTro4.chr15_GL392289_random      44891 28 -    187897 ggccttcatgtgc---t---gaataaaggggctg
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15760 28 -     28805 ggccttcttgtgc---t---gaataaagaggctg
i nomLeu3.chr6_GL398151_2_random C 0 I 105
s rheMac3.chr7                   112816290 28 - 170124641 GGCCTTCATGTGC---T---GAAGAAAGGGGCCG
i rheMac3.chr7                   I 185 C 0
s macFas5.chr7                    61601203 28 + 171882078 GGCCTTCATGTGC---T---GAAGAAAGGGGCCG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108930967 28 - 162156779 GGCCTTCATGTGC---T---GAATAAAGAGGCTG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1328905 28 +  24206276 GGCCTTCATGTGC---T---GAAGAAAGGGGCCG
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113755305 28 - 132174527 ggacttcatatgt---t---gaatcacggggctg
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90197733 31 + 124595110 GATTGTCATTTCCTCAT---GCATAAAGGGATGG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58221432 31 +  91889043 GGCCTCCCCTTCC---TTGAGCACAAAGGGGCTG
i canFam3.chr3                   C 0 C 0
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=167442.000000
s hg38.chr15_KI270850v1_alt          42267 101 +    430880 ccaagccccatccttgcaTAAGTGAGGTCTGGGCATGAAGGGCACAGCACTGCGTGGGGATCCAGGTGGTGCTCAGGGAAGGCGGCTTTTTCCCCTCCCGC
s panTro4.chr15_GL392289_random      44919 101 -    187897 CCAAGCCCCATCCTTGCATAAGTGAGGTCTGGGCATGAAGGGCGCAGCACTGCGTGGGGATCCAGGTGGTGCTCAGGGAAGGTGGCTTTTTCCCCTTCCCC
i panTro4.chr15_GL392289_random  C 0 C 0
s rheMac3.chr7                   112816318 101 - 170124641 CCAAGCCCCATCCTTGCATAAATGAGGTCTGGACATGAAGGGCCCAGCACTACGTGGGCATCCAGGTGATACTCAGGGAAGGCGGCTTTTTCCCCTCCCCC
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61601231 101 + 171882078 CCAAGCCCCATCCTTGCATAAATGAGGTCTGGACATGAAGGGCCCAGCACTACGTGGGCATCCAGGTGATACTCAGGGAAGGCGGCTTTTTCCCCTCCCCC
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108930995 100 - 162156779 CCAAGCCCCATCCTTGCATAAATGAAGTCTGGGCATGAAGGGCCCAGCACTGCCTGGGCATCGAGGGGATACTCAGGCAAAGCGGC-TCTTCCCCTCTGCC
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1328933 101 +  24206276 CCAAGCCCCATCCTTGCATAAATGAGGTCTGGGCATGAAGGGCCCAGCACTGCGTGGGCATCCAGGTGATACTCAGGGAAGGCGGCTTTTTCCCCTCCCCC
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113755333 101 - 132174527 TCAATCACCATCCTTGCCTAAATGAGGTCTGGGCACGAAGCATCCCGCACTGCGTGGGCGTCCAGGTGGTACTCAGGGAAGGCGGCTTTTTCCCCTTCCCC
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90197764  86 + 124595110 TCAATCCTTATTCTTGTATTAGTGGGGTCTACCGGTGAAAGGCTCAGTATTGCCCGTGA---------------AGGCTAGGCCGCTTTACCCCCTCCCTC
i mm10.chr9                      C 0 I 9
s canFam3.chr3                    58221463  38 +  91889043 -------AGAGCCATGCATAGG-GAGG---GGGCGGGGAGAGCT----------------------------------AAAGC------------------
i canFam3.chr3                   C 0 C 0
e nomLeu3.chr6_GL398151_2_random     15788 105 -     28805 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=322200.000000
s hg38.chr15_KI270850v1_alt          42368 139 +    430880 AAAGCCACTGTCATCCCCCATTGCAAGGTCAGGGAGAGGGCCTGGGGCTGACCC-TGCCAGTCTAAGGAATCCAGGAGCTGTGGCCTGAAGAGCTGCGG-CCCCTGTGCTATTGGCTGTCTGCCCCCTGACCCTAGGACAG
s panTro4.chr15_GL392289_random      45020 138 -    187897 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGGCTGACCC-TGCCAGTCTAAGGAATC-AGGAGCTGTGGCCTGAAGAGCTGCGG-CCCCTGTGCTATTGGCTGTCTGCCCCCTGAGCCTAGGACAG
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15893 139 -     28805 AAAGCCACTGTCATCCCCAGTTGCAAGGTCGGGGAGAGGGCCTGGGGCTGACCC-TGGCAGTCTAAGGAATCCAGAAGCTGTGGCGTGAAGAGCTGCGT-CCCCTGTGCTATTGGCTGTCTGCTCCCTGACCCTAGGACAG
i nomLeu3.chr6_GL398151_2_random I 105 C 0
s rheMac3.chr7                   112816419 139 - 170124641 AAAGTCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGACCCACCC-TGACAATCTAAGGAATCCAGAAGCTGTGGTGTGAGGAGCTGCGG-CCCCTGTCCTATTGACTATCTACTCTCTGCCCCTAGGACAG
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61601332 139 + 171882078 AAAGTCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGACCGACCC-TGACAATCTAAGGAATCCAGAAGCTGTGGTGTGAGGAGCTGCGG-CCCCTGTCCTATTGACTATCTACTCTCTGCCCCTAGGACAG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108931095 139 - 162156779 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGGCCAACCC-TGCCAGTCTAAGGAATCCAGAAGCTGTGGTGTGAGGAGCTGCGG-CTCCTGTGCTATTGGCTGTCTGCTCCCTACTCCTAGGACAG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1329034 139 +  24206276 AAAGTCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGACCGACCC-TGACAATCTAAGGAATCCAGAAGCTGTGGTGTGAGGAGCTGCGG-CCCCTGTGCTATTGACTGTCTACTCTCTGCCCCTAGGACAG
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113755434 140 - 132174527 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGAAGAGGGCCTGGGTCTGCCCC-TGGAAGTCTAGGGCACCCAGAAGCTGTGGTGGGAAGAGCTGTGGCCCCCTGTACTATTGGCTATCTGCCCCCTGCCCCTTGGACAG
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90197859 124 + 124595110 GCAGCCATTACTGTCTTCCATTGCAAAGGCATGGGGA--GTCTGAGGCCACCCCTTGACACCTGAGGGAACCTAAGAGCTT-----------GCT-TGG-CATTTAC-CTACTGGTTCTATGCAC-CTGTCCCCAGGACAG
i mm10.chr9                      I 9 I 18
s canFam3.chr3                    58221501  81 +  91889043 CAGGTCACTGTCGACT--------GGGGTCAGGAAGGAG-------------CC-GAGCAGCTTGTG---------------------------TGTGT-CTC----------AGCCATCTGCCCCGGGCCCCCAGGACAG
i canFam3.chr3                   C 0 C 0
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=115687.000000
s hg38.chr15_KI270850v1_alt          42507 49 +    430880 AGTCCTCAGCCACGGCCCTCAAACTGGCATTCGGGGCCCCCTGCAGTCT
s panTro4.chr15_GL392289_random      45158 49 -    187897 AGTCCTCAGCCACGGCCCTCAAGCTGGCATTCGGGGCCCCCTGCAATCT
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     16032 49 -     28805 AGTCCTCAGCCAGGGCCCTCAAGCTGGCATTCAGGGCCCCCTGCAATCT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112816558 49 - 170124641 AGGCCTCAGCCAGGGCACTCAAGCTGGCATTCGGGGCCCCCTGCAATCT
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61601471 49 + 171882078 AGGCCTCAGCCAGGGCACTCAAGCTGGCATTCGGGGCCCCCTGCAATCT
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108931234 49 - 162156779 AGTCCTCAGCCAGGGCCCTCAAGCTGGCATTCGGGGCCCCCTGCAATCT
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1329173 49 +  24206276 AGGCCTTAGCCAGGGCACTCAAGCTGGCATTCGGGGCCCCCTGCAATCT
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113755574 49 - 132174527 AGTTGGCAGCCAGGGCACTCAGGCTGGCATTCGGGGCCCCCTGCAGTCT
i calJac3.chr10                  C 0 C 0
s canFam3.chr3                    58221582 37 +  91889043 --------TCTGTGGTCCTTGGGCTGGCGGTCAGCGCCTCGGGGA----
i canFam3.chr3                   C 0 C 0
e mm10.chr9                       90197983 18 + 124595110 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=1532229.000000
s hg38.chr15_KI270850v1_alt          42556 711 +    430880 CCCCAGTCTGCCTTCTCCCCTTATCCAATGC-GCCTTCTCTACCTGC-GCTGGCTCCTGGGCAGCCCTCATTTGGGCTCAGAGTGGCCCCTGCCATGCCTCGCTGCCATGCCTTGCTACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCACAAACCCCATTACCTCAAGGCCAAGTGGCAGTGCC-CCCACCCTGTCCTGCCTGCCCTCAGcac---------------------gcacccagc-cagcatctcagagcactcctgtgtgctgcctgagctgggtgctggca----tcacaTCTCTCGCCT----------TCATGGCTAGAGCTGGCCACAGGGAGTGGGGTGGTTATGATCCCA----GGGGATGAGGACCAGATGGAGCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACAGATGGCCCAGGAGGCTCTGGGCTTGTAAGGTCTCCCAGGGGCG-GGTATGAGTGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTC---TGCCACCAGTGAAC-----------------------AGTGGAGGGG--CAGCTGGGAAGGTGTCTTGGACTTTGAG-ACCTGGAATTCCCAGGATGTTTTGCTGGTCTGTGGGACAGTT-GGCGGGAC-GGGGGAAAGCCAGGAAACTCCAGAGTGTGCGGTCGCTGCAGTGACACAGCAT----------GGCCACAT-CCATTTGCTGTGGAGGTGGG----Gttgacagagga
s panTro4.chr15_GL392289_random      45207 713 -    187897 CCCCAGTCTGCCTTCTCCCCTTGTCCAATGCAGCCTTCTCTACCTGC-GCTGGCTCCTGGGCAGCCCTCATTTGGGCTCAGAGTGGCCCCTGCCATGCCTCGCTGCCATGCCTTGCTACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCACAAACCCCATTATCTCAAGGCCAAGTGGCAGTGCC-CCCACCCTGTCCTGCCTGCCCTCAGCAC---------------------GCACCCAGC-CAGCATCTCAGAGCACTCCTGTGTGCTGCCTGAGCTGGGTTCTGGCA----TCACATCTCTCGCCT----------TCATGGCTAGAGCTGGCCACAGGGAGTGGGGTGGTTATGATCTCA----GGGGATGAGGACCAGATGGGGCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACGGATGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGCG-GGTATGAGTGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTAGGTGGCTGAACTGGAAGCTGTCCTAAGTGAGGAGTTTTC---TGCCACCAGTGAAC-----------------------AGTGGAGGGG--CAGCTGGGAAGGTGTCTTGGACTTTGAG-ACCTGGAATTCCCAGGATGTTTTGCTGGTCTGTGGGACAGCT-GGCGGGACAGGGGGAAAGCCGGGAAACTCCAGAGTGTGCGGTCGCTGCAGTGACACAGCAT----------GGCCACAT-CCATTTGCTGTGGAGGTGGG----Gttgacagagga
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     16081 696 -     28805 CCCCGGTCTGCCTTCTCCCCTTGTCCAATGCAGCGATCTCTACCTGC-GCCAGCCCCTGGGCAGCCCTCATTCAGGCTCAGAGTGGCCCC------------CTGCCATGCCTTGCTACCCTGCCTTTGGCATGGGTGGCCTTCCTGCCTCAAACCCCATTACCTCAAGGCCCAGTGGCAGTGCC-CCCACCCTGTCCTGCCTGTCCTCAGCAC---------------------ACACCCAGC-CAGCATCTCAGAGCACTTCTGTGTGCCTCCTGAGCTGGGTGCTGG-------CACGTCTCTCACCT----------TCATGGCTAGGGCTGGCCACAGGGAGCGGGGTGGTTATGATCCCAGGGCGGGGTTGAGGACCAGATGGGGCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACCGATGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGAGGCA-GGTGTGAGTGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTTGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTC---TGCCACCAGTGAAC-----------------------AGTGGAGGGG--CGGCTGGGGAGGTATCTTGGACTTGGAG-ACCTGGAATTCCCA-GATGTTCTGTTGGTCTGTGGGACAGTT-GGCGGGACATGTGGAAAGCCGGGAAACTC--GTGTGTGTGCTCACTGCAGTGACACAGCAT----------GCTCATAT-CCGTTTGCTGTGGAGGTGGG----GTTGACA---ga
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112816607 671 - 170124641 CCCCGGTCTGCCTTCTCCCCTTGTCCAATACAGCCTTCTCTATCTGC-ACTGGCTCCTGGGCAGCCCTCATTCAGGCTCAGAGTGGCCC-------------CTGCCATGCCTCGTTACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCT---------TTATCTCA---------GGCAGCACA-CCCACCCTGTCCTGCCTGCCCTCAGCAT---------------------GCACCCAGC-CAGCATCTCAGAGCACTCCTGTGTGTCTCCTAAGCTGGGTGCTGGCA----CCATGTCTCTCACCT----------TCAGGGCCAGGGT-----------GGTGGGGTGGTTATGATCCCT----GGGGGCGAGGACCAGATGGGGCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACGGATGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGCG-GGTGTGAGTGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTC---TGCCACCAGTGAAC-----------------------AGTGGAGGGG--CGGCTGGGAAGGTGTCTTGGACTTTGAG-ACCCGGAATTCCCAGGATGTCCTGCTGGTCTGTGGGACAGTT-GGCAGGACATGTGGAAAGCCGGGAAACTCCAGAGTGTGTGGTCGCTGCAGTGACACAGCAT----------GGCCACAT-CTGTTTGCTGTGGAGGTGGG----GTTGACAGACCT
i rheMac3.chr7                   C 0 I 20
s macFas5.chr7                    61601520 680 + 171882078 CCCCGGTCTGCCTTCTCCCCTTGTCCAATACAGACTTCTCTACCTGT-GCTGGCTCCTGGGCAGCCCTCATTCGGGCTCAGAGTGGCCC-------------CTGCCATGCCTCGCTACCCTGCCTCTGGCAAGGGTGGCCTTCCTGCCTCAAACTCCATTATCTCA---------GGCAGCACA-CCCACCCTGTCCTGCCTGCCCTCAGCAT---------------------GCACCCAGC-CAGCATCTCAGAGCACTCCTGTGTGTCTCCTAAGCTGGGTGCTGGCA----CCATGTCTCTCACCT----------TCAGGGCCAGGGT-----------GGTGGGGTGGTTATGATCCCT----GGGGGCGAGGACCAGATGGGGCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACGGATGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGTG-GGTGTGAGTGGGCT--GCAGGGAGTGGGCTATGGGGACTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTC---TGCCACCAGTGAAC-----------------------AGTGGAGGGG--CGGCTGGGAAGGTGTCTTGGACTTTGAG-ACCCGGAATTCCCAGGATGTCCTGCTGGTCTGTGGGACAGTT-GGCAGGACATGTGGAAAGCCGGGAAACTCCAGAGTGTGTGGTCGCTGCAGTGACACAGCAT----------GGCCACAT-CCGTTTGCTGTGGAGGTGAG----Gttgacagagga
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108931283 692 - 162156779 CCCCGGTCTGCCTTCTCCCCTTGTCCAATACAGCCTTCTCTATCTGC-ACTGGCTCCTGGGCAGCCCTCATTCAGGCTCAGAGTGGCCC-------------CTGCCATGCCTCGTTACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCTCAAACCTCAAGGCCCAG--------TGGCAGTGCC-CCCACCCTGTCCTGCCTGCCCTCAGCAT---------------------GCACCTAGC-CAGCATCTCAGAGTGCTCCTGTGTGTCGCCTAAGCTGGGTGCTGGCA----CCATGTCTCTCACCT----------TCAGGGTTAGGGCTGGCCAGAGGGAGCAGGGTGGTTATGATCTCC----GGGGATGAGGACCAGATGGGGCAGAGAACAGGAACTGAAGCACCTGGGGGCCTAGAACCAAGGACGGATGGCCCAGGAGGCTCTGGGCCTGCAAAGTCTCCCAGGGGCG-GGTGTGAGTGGGCT--GCAGGGAGTGGGCAACGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTC---TGCCACCAGTGAAC-----------------------AGTGGAGGGG--CGGCTGGGAAGGTATCTTGGACTTCCAG-ACCTGGAATTCCCAGGATGTTTTGCTGGTCTGTGGGACAGTT-GGCGGGACATGTGGAAAGCGGGGaaactggtgtgtgtgtggtcacTGCAATGACACAGCAT----------GGCCACAT-CCGTTTGCTGTGGAGGTGGG----GTTGACAGAGGA
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1329222 680 +  24206276 CCCCGGTCTGCCTTCTCCCCTTGTCCAATACAGCCTTCTCTATCTGC-ACTGGCTCCTGGGCAGCCCTCATTCGGGCTCAGAGTGGCCC-------------CTGCCATGCCTCGCTACCCTGCCTCTGGCAAGGGTGGCCTTCCTGCCTCAAACTCCATTATCTCA---------GGCAGCACA-CCCACCCTGTCCTGCCTGCCCTCAGCAT---------------------GCACCCAGC-CAGCATCTCAGAGCACTCCTGTGTGTCTCCTAAGCTGGGTGCTGGTG----CCGTGTCTCTCACTT----------TCAGGGCCAAGGT-----------GGTGGGGTGGTTATGATCCCT----GGGGGTGAGGACCAGATGGGGCAGAGAACAGGAACTGAAGCACCTGGGGGCCTAGAACCAAGGACGGATGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGTG-GGTGTGAGTGGGCT--GCAGGGAGTGGGCAACGGGGGCTGGTTAGGTGGCTGAACTAGAAGTTGTCCTAAGTGAGGAGTTTTC---TGCCACCAGTGAAC-----------------------AGTGGAGGGG--CGGCTGGGAAGGTGTCTTGGACTTTGAG-ACCCGGAATTCCCAGGATGTCCTGCTGGTCTGTGGGACAGTT-GGCAGGACATGTGGAAAGCCGGGAAACTCCAGAGTGTGTGGTCGCTGCAGTGACACAGCAT----------GGCCACAT-CCGTTTGCTGTGGAGGTGGG----Gttgacagagga
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113755623 676 - 132174527 CCCGGGTCTGCC-TCTCCCCTTGTCTTGCGTAGTCTTCTCTATCT-------GCTCCTGAACAGCCCTCATTCAGGCTCAGAGTGGCCC-------------CTGCCATGCCTCACTACCCTGCCTCTGACAGGGGTGGCCTTCCTGCCTCAAATTCCATTACCTCAAGGCCCAGAGGTAGTGCC-CCCACTTTGCCCTGCCTGTCCTCAGCAC---------------------GCACCGAGC-CAGCATCTGGGAGCACTCCTGTGTGCCGCCTGAGCTGGGTGCTGGCA----TCACATCTCTTGCTG----------TCAGGGCTAG-GCTGGCTACAGG-GAAAAGGTGGTTACCATCCCA----GTTGGTGAGGACCAGATGGGGCAGAGAATGGGAATTGAGGTGCCTGGGGGCCCAGAACCAGGGACA-ATGGCCCACGAGGCCCTGGGCTTGCAGGGTCT-CCAGGGGTG-GGTGTGAGTGGGTA--G-AGGGAGT--------GGGGCTGCTTAGGTGGCTGAACTAGAAGCTGTCTTAAGT---GAGTTTTC---GGTGGCCAGTGAAC-----------------------AGTGGAGGGG--AAGA-AGGAAGGTGTCTTGCACCTTGAG-ACCTGGAGTTCCCAGGATGTTTTGCTGGTCTGTGGGATAGTG-TGGTGGATATTTGGAAAGCCTGGAATCTCCAGAGTGTGTGGTCACTGCAGTGACCCAGCAT----------GGCTGCAT-CCGTTTGCTGCAGAGGCGGG----GCTGacaaagga
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90198001 697 + 124595110 CCCCGATCTGCT---TCTCCCTGCTCTGCACAGCCTTCACTACCAGCAGCTGGTTCCTG-GTGGTACTGGCTCAGGACCAGAGCAACTT-------------CTGCTCTGCCATTCTGCTCTG-----------------------------AATCCCATTGCCTCATGCCGGGGAGATGTTAAG-CCATCCCTGCCTGTTTCTCTCTCATCATCTCCTTCCATTTTTCCCACAGACACTCAGCACAGCTAAGCTGGGTGCTATACCACAGTGCTTGCCTTTGGGGCTGATAATGTCTATGGCTCTCTTCTGTTTCTCTCGTCAAGCTCAGGGTTGGC---AGAGAATACGGTAGCTATGGTCCCA----GGTGGTG-----CAGATAGGG-AGAGGGCAGGAATTCAGGCTCT-----------ATCCGAAATAGCGTGGCTCAGGAGGCTGTGGGTTTGCAAGGTCTCCAAGAGGAATGGGAAGGGTGGGCTTAGCAGGG-------------------------------ACCCAAAGCCTATCCATGTGAAGGGCCTCCCTGTGCCCCTACCCGCCTTCCCAGCACCCTCCCCCTCTCAAGTAAAGGGAGCCAATCAGGGAAGACTCTAGGATCGCAAGTTCCTGGAGCTTCCAGGATGTTTTGATGGTTTGTGGGATTGTTCAACAGGACATTTGGAAATCCTGGAAACTCCAGGGTGTGTGATCACCGTGGCAAGGCAGCTCACATGCC--GGGTCATGTGACCTTCCCCAGGGAGGTGGGGGCTGTTATCAAGA--
i mm10.chr9                      I 18 C 0
s canFam3.chr3                    58221619 455 +  91889043 ------------------CCTCGCT-------GCCTTCTCCACAGTG-GCTGGCTCCTTGGCAGCCC-----------------AGCCT----------------------------------------------------------CCTCCAATCCTGTGGCCTCAGGGCCCAGTGGAGGTGCCACCCACCCTGCCCCTGCCGCACACAGCCC--------------------------CGGC-CAGAGGCCGCCAAGGCTCCT-------------------------------TCCTGCCTCTCACCT------------------------------------------------GGGCTCG----GGGAGGGGGACCCATGGCGGGGAGAGGGTAGAA-----------TGGAGGCC-----------------------------------------GGGTCTCCGGAGGTCG-GGT-------GGAT--GGAGGGG---------------TGGTCAGGCGGCTGAGCCACCAGCCGACCCAAGTGAGGAGTTGGG----------------------------------------GGTGGAGGC---CAGCTCGGG-GGTGACGTGGGCGCCAAG-ATCCTGAAGCTCGGGGATGTTTTGATGGTTTGTGG--------GGCAAGACGTTTAGAAAGCCTGGAAACTCCAGGGCGTGCGGTCAGCCCGGTGAGGCAGCTGACCTAGCGTGGCCCACAT-CCGTT---TGTGGAGGTGGGCGTTATTGACAGA---
i canFam3.chr3                   C 0 C 0
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=20583.000000
s hg38.chr15_KI270850v1_alt          43267 8 +    430880 gggaacca
s panTro4.chr15_GL392289_random      45920 8 -    187897 gggaaccg
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     16777 8 -     28805 gggaaccg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61602200 8 + 171882078 gggagcca
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108931975 8 - 162156779 GGGAACCA
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1329902 8 +  24206276 gggagcca
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113756299 8 - 132174527 gggaaccg
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90198698 8 + 124595110 GGAAACCT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58222074 8 +  91889043 GGGAACCC
i canFam3.chr3                   C 0 C 0
e rheMac3.chr7                   112817278 20 - 170124641 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=4190587.000000
s hg38.chr15_KI270850v1_alt          43275 1759 +    430880 aggcccaagaggtgaagcagcttgtctgaggtcaccccgggcgaccaggatgcaggcctgcagatgtgcactttggagct-ctgcctgGA-GCTGGGGTGGAGGAGCCTGCCTGCTGCCTCGTGCCCTCTGCCGGGCCTGAGGGATGTCCCTGGCACAGGGCTGGCTGCTGTCCTCCTGCTCTTCCTCCCCAGGGAGGTCTGCTGGAGTAAGCA-GGGCCCAGGCGGCAGGTGGGGGCTGTCAGCAGT-----------GGCAGTGGCATCAGGAGCAAGGCCAGGAGGCTGGAGACAAGCCACTTCCCAAAATAGCTCTGATAACCACGGGGCAGGAGGGCCCAGCCAAGCCTCAGCCC-TGACAACCACAGCCTGCAGCCGGCCTCCCTCCCCACT-------------GG--GCCTGGGCTTAGTCCCTGGTTTCCGCTGACAGCCTGTAGGGCC----------CACTCACTCTAGGCTTCGTGGCCCACCTGAGAAGTGGGAGGCTGGCCTGGGAGATGCGA-CCTGTGACTCAGAACCCGAGGCTGAGTACAGCCCCTGTGGCT-----------GGAGGTGGTCACGGAGGTCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGCGGTGGCGG--GAGTCGGGGGCAGAGGCCGCTGCAGGTTGGCAGGAGGCCCC-GGGACCGCAGTTC-------------------TGTGCCAGGATCTGTC-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGATGGCAGGG----CGTCGCCCTGGGCAGGCTCTTTAACAGGCA---TGTGA-GGGGGT-CAGGGT-GCGGTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGCGCCCGTTCTCGAGTCCT-GGGGTCGGCCGTGAGTAGGTGGGACAGAGACACCAACAGTTGGAGACCTGCAAGTCCAGTTTGGGAGCCG--CTCCAGAAACTGGGGCTCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTTGAGGTGGTTGGGGTGGGG----------------------------AGCCAGGTTCTGGATACCCCAAACCACTGGTTCTGA--------------TGCCTCTCTGACCCCCC-ACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGTGAGACACTGCGCCTACTGGGCCGCTGCCAGCTGCCCACCGTCCGCACCCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCCACGGCTCCCCCTCCCGAGGCCATCAGCGGGT---CACCCGCCACT-----------GA----CGGTGCCAGGATGCACAGACCGACC-------GACAGACCTCAGTG-CCCACCACGGGCTGTGGCGGAGCTCCC-GCCCC--------CTACGCCCTAATGGTGCTAACCCCCTCTCACTACCCAGCGGCAGGCTGGGG-AGCTCCTCCCCCTC--GAAAAAGGTATTTTTTTATTCTAACAGTTTGTGTAACATTTATTATGATTTTACATAAATGAGCATCTACCATTCTAAAGCACAGTGTGACTTCATC-TTGGATTTGGGGAATCTTAAAAGTGAGAAACTCTTCCCCCGACCCCTCTGCCCAAAACTCCACCGCTGCAGCACCT-----------CGGCAGGC-GCGGCTTTTCACCTGCTCCTCT-GGGGCAGATCTGCAGGGGGCAGCGTAGCAAACGAGTCCCTGAGAGCATGGCATCTGGTG-AGGCACGGAAGGCCTCGGAAGCCAG-GGGGCTGCTGCCCAGGGAGGC-CTGTCT--GCAGAGGGTGGGGTTCTGGGGGCAGGAAGGTCTTCTGGGCAGG-GGCACAGCTTGGC---------------CCTTACTTGCTG--CCTG-----CCTTCAGCTCAGGCTCCCAGCCTTCCCTGGGGCCCCACTCTGTGGTCCTCAGAGACCT--GTTCCA---CAGGGATTGAG-
s panTro4.chr15_GL392289_random      45928 1760 -    187897 aggcccaagaggtgaagcagcttgtctgaggtcacCCCGGGCGACCAGGATGCAGGCCTGCAGATGTGCACTTTGGAGCT-CTGCGTGGA-GCTGGGGTGGGGTAGCCTGCCTGCGGCCTCGTGCCCTCTGCCGGGCCTGAGGGATGTCCCTGGCACAGGGCTGGCTGCTGTCCTCCCGCTCTTCCTCCCCAGGGAGGTCTGCTGGAGTAAGCA-GGGCCCAGGCGGCAGGTGGGGGCTGTCAGCAGT-----------GGCAGTGGCATCAGGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAAAATAGCTCTGATAACCACGGGGCAGGAGGGCCCAGCCAAGCCTCAGCCC-TGACAAGCACAGCCTGCAGCCGGCCTCCCTCCCCACT-------------GG--GCCTGGGCTTAGTCCCTGGTTTCTGCTGACAGCCTGTAGGGCC----------CACTCTCTCTAGGCTTTGTGGCCCACCTGGGAAGTGGGAGGCTGGCCTGGGAGATGGGA-CCTGTGACTCAGAACCCGAGGCTGTGTACAGCCCCTGTGGCT-----------GGAGGTGGTCACGGAGGTCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGCGGTGGCGG--GAGTCGGGGGCAGAGGCCGCTGCAGGTTGGCAGGAGGCCCC-GGGACCGCAGTTC-------------------TGTGCCAGGATCTGTC-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGATGGCAGGG----CGTCGCCCTGGGCAGGCTCTTTAACAGGCA---TGTGA-GGGGGT-CAGAGT-GGGGTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGCGCCCGTTCTCGAGTCCT-GGGGTCGGCCGTGAGTAGGTGGGACAGAGACACCAACAGTTGGAGACCTGCAACTCCGGTTTGGGAGCCG--CTCCAAAAACCGGGGCTCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTTAAGGTGGTTGGGGTGGGG----------------------------AGCCAGGTTCTGGGTACCCCAAACCACTGGTTCTGA--------------TGCCTCTCTGCCCCCCCCACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGTGAGACACTGTGCCTACTGGGCCGCTGCCAGCTGCCCACCGTCCGCACCCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCCACGGCGCCCCCTCCCGAGGCCATCAGCGGGT---CACCCGCCACT-----------GA----CGGTGCCAGGATGCACAGACCGACC-------GACAGACCTCAGTG-CCCACCACGGGCTGTGGCGGAGCTCCC-GCCCC--------CTACGGCCTAATGGTGCTAACCCCCTCTCACTACCCAGCGGCAGGCTGGGG-AGCTCCTCCCCCTC--GAAAAAGGTATATTTTTATTCTAACAGTTTGTGTAACATTTATTATGATTTTACATAAATGAGCATCTACCATTCTAAAGCACAGTGTGACTTCATC-TTGGATTTGGGGAATCTTAAAAGTAAGAAACTCTTCCCCCGACCCCTCTGCCCAAAACTCCACCGCTGCAGCACCT-----------CGGCAAGC-GCGGCTTTTCACCTGCTCCTCT-GGGGCAGAGCTGCAGGGGGCAGCGTAGCAAACGAGTCCCTGAGAGCATGGCATCTGGTG-AGGCACGGAAGGCCTCGGAAGCCGG-AGGGCTGCTGCCCAGGGAGGC-CTGTCT--GCAGAGGGTGGGGTTCTGGGGGCAGGAAGGTCTTCTGGGCAGG-GGCACAGCTTGGC---------------CCTTACTTGCTG--CCTG-----CCTTCAGCTCAGGCTCCCAGCCTTCCCTGGGGCCCCACTCTGTGGTCCTCAGAGACCT--GTTCCA---CAGGGATTGAG-
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     16785 1765 -     28805 aggcccaagaggtgaagcagcttgtctgaggtcaccccaggcaaccaagatgcaggcctgcagatgtgcactttggagct-ctgcctgGA-GCTGGAGTGGAGGAGCCTGCCTGCTGCCTCATGCCCTCTGCCGGGCCTGGGGGATGTCCCAGGCCCAGGGCTGGCTGCTGCCTTCCTGCTCCTCCTCCCCAGGGAGGTCTGCTGGAGTAAGCA-GGGCCTGGGCGGCAGCTGGGGGCTGTCAGCAGT-----------GGCAGTGGCATCAGGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAAAATAGCTCTGATAACCACGGGGCAGGAGGgcccagccaagcctcagccc-tgacaagcacagccTGCAGCTGGCCTCCCTCCCCAGT-------------GG--GCCTGGGCTCAGTCCCTGGTTTCTGCTGACGGCCTGTAAGGCC----------CACTCACTCTAGGCTTCGTGGCCCACCTGAGAAGTGGGAGGCTGGCCTGGGAGATGGGATCCTATGACCCAGAACTCAAGGCTGTGTACAGCCCCTGTGGCT-----------GGAGGTGGTCACGGAGGTCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGCGGTGGTGG--GAGTCAGGGACAGAGGCTGCTGCAGGCTGGCAGGAGGCCCCTGGGACCGCAGTTC-------------------TGTGCCAGGATCTGTCGGGGGAACATCAGGGGTGAGCAAGGATGGAGATGGGGTGGCAGGG----TGTCACCCTGGGCAGGCTCTTTAACAGGCA---TGTGAGGGGGGT-CAGGGTGGGGGTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGTGCTGGTTCTCTAGTCCT-GGGGTTGGCCATGAGCAGATGGGACAGAAGCAGCAACAGCTGGAGATGTGCAACTCCGGTTCAGGAGCCG--CTCCAGAAACCGGGGCTCTCTGCTTAGTGCGGAGCTGCTGGAGCCTCCTTAAGGTGGTTGGGGTAGGG----------------------------AGCCAGGTTCTGGGTACCCCAAACCACTGGTTCTGA--------------TGCCCCTCTGCCCCCCCCATTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGCGAGACTTTGCGCCTACTGGGCCGCTGCCAGCTGCCCACCGTCCGTACCCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCCACGGCGCCCCCTCCCGAGGCCATCAGCGGGT---TGCCCGTCGCT-----------GA----CTGCGCCAGGATGCACAGACCGACC-------GACAGACCTCAGTG-CCCACCACGGGCTGTGGC-GAGCTCCC-GTCCC--------CTGCGCCCTAATGGTGCTAACCCTCTCTCACTGCCCAGTGGCAGGCTGGGG-ACCTCCTCTCCCTC--AAAAAAGGTATTTTTTTATTCTAACAGTTCGTGTAACATTTATTATGATTTTACATAAATGAGCATCTGCCATTCCAAAGCACAGCATGACTTCATC-TTGGATTTGGAGAATCTTAAAAGTGAGAAACTCTTCCCCCGACCCCTCTGCCCAAAACTCCACCGCTGCAGCACCT-----------CGGCATGC-ACGGCTTCTCACCTGCTCCTCT-GGGGCAGATCTGCAGGGGGCAGCGTAGAAAATGAGTCCATGAGAGTATGGCGTCTGGTG-AGGCACGGAAGGTCTCAGAAGCCGGAGGGGCTGCTGCCCAGGGAGGG-CTGTCT--GCAGGGGGTGGGGTTCTGGGGGCAGGAAGGTCTTCTGGGCAGG-GGCACAGCTTGGC---------------CCTTACTTGCTG--CCTG-----CCTCCAGCTCAGGCTCCCAGCATTCCCTGGGGCCCCACTCTGTGGTCCTCAGAGACTT--GTTCCA---CAGGGATTGAG-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112817298 1721 - 170124641 AAGCCCAAGAGGTGAAGCAGCTTGTCTGAAGTCACCCTGGGCGACCAAGATGCAAGCCTGCAGATGTGCGCTTTGGAGCT-CTGCCTGGA-GCTTTGGTGGAGGACCCTGCCTGCTGCCTCGTGCCCTCTGCTGGGCCTGGGGGATGT-----------------CTGCTGCCCTCCTGCTCCTCCTCCCCAGGGAGGTCTGCTGGAGTAAGCA-GGGCCCGGGCAGCAGTTGGGGGCTGTCAGCAGT-----------GGCAGTGGCATCAGGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAGAATAGCTCTGATAACC-TGGGGCAGGAGGGCCCAGCCAAGCCTCAGCCC-TGACGAGCACAGCCTGGAGCTGGCCTCCCTCCCCAGT-------------GG--GCCTGGGCTCAGTCCCTGGTTTCTGCTGACAGCCTGTAAGGCCC--------ACACTCTCTCTAGGCTTTGTGGCCCATCTGACAAGTGGGAGGCTGGTCTGGGAGATGGGACCCTGTGACGCAGAACCCGAGGCTGAGTACAGTCCCTGTGGCT-----------GGAGGTAGTCACGGAGGCCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGTGGTGGAGG--GAGTTGGGGCCAGAGGCCGCTGCAGGCTGGCAGGAGGCCCC-AGGGCCACAGTTC-------------------TGTGCCAGGATCTGTT-GGGGAACACCAGGGATGAGCAAGGATGGAGATGGGGTGGCAGGG----CATCGCCCTGGGCAGACCCTTTCACAGGCA---TGTGA-AGGGGT-CAGGGT-GGGGTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGTGCCCATTCTCGTGTCAT-GGGGTTGGCCATGAGTAGGTGGGAGAGAGATAGCAACAGTTGGAGACCTGCAACTCTGCTTTGGGAGCCG--CTCTAAAAACCGGGGATCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTTAAGGTGGTTGGGGTGGGG----------------------------AGCCAGGTTCTGGGTACTGTAAACCACTGGTTCTGA--------------TGCCCCTCTGTCCCCTG-ACTCCAGACTGTGAGCGGGAC--CCCGTCTTTCGGGTTCTGCGAGACGCTGCACCTACTGGACGGCTGCCAGCTGCCCACCATCCACAC-CAGTGCTGCTGTTCATGCTCTCTGCCCAGCCATGGTGCCCCCTCCTGAGGCCATCAGTGGGTCACCACCCACCGCT-----------GA----CGTTGCCAGGATGCACAGACCAACC-------GACAGACCTCAGTG-CCCACAACGGGCTGTGGAGAAGCTCTT-GCCCC--------CTGCGCCCTAATGGTGCTAACCCTCTCC--CTACCCAGCGGCAGGCTGGGGAACCTCCTCCCCCTCAGAAAAAAAGTATTTTTTTATTCTAACAGTTTGTGTAACCTTTATTATTATTTTACATAACTGAACATCTAT----------CACAGTGTGACTTCATC-CTGGATTTGGCAAATCTTAAAAGTCAGAAACTCTTCCCCCAACCCCTCTGCCCAAAACTCCACTGCAGCAGCACCT-----------CGGTAGGC-GCGGCTTTTCACCGGCTCCTCT-GGGGCAGATCTGCAGGGGGCAGAGCAGCAATCGAGTCCATGACAGC-TGGTGTCTGGT--------------CCTCGGAAGCTGG-GTGGCTGCTGCCCAAAGAGGC-CTGTCT--GCAGAGGGTGGGGTTCTGGGGGCAGGAAGGTCTACTGGGCAGG-GGCACAGCTTGGC---------------CCTTTCTTGCTA--CCTG-----CCTCCAGCTCAGGCTCCCAGCCTCCCCTGGGGCTCCACTCTGTGGTCCTCAGAGACCT--GTTACA---CAGGGATTGGG-
i rheMac3.chr7                   I 20 C 0
s macFas5.chr7                    61602208 1721 + 171882078 -agcccgagaggtgaagcagcttgtctgaagtcacCCTGGGCGACCAAGATGCAAGTCTGCAGATGTGTGCTTTGGAGCT-CTGCCTGGA-GCTTTGGTGGAGGAGCCTGCCTGCTGCCTCGTGCCCTCTGCTGGGCCTGGGGGATGT-----------------CTGTTGCCCTCCTGCTCCTCCTCCCCAGGGAGGTCTGCTGGAGTAAGCA-GGGCCCGGGCAGCAGTTGGGGGCTGTCAGCAGT-----------GGCAGTGGCATCAGGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAGAATAGCTCTGATAACC-TGGGGCAGGAGGGCCCAGCCAAGCCTCAGCCC-TGACGAGCACAGCCTGGAGCTGGCCTCCCTCCCCAGT-------------GG--GCCTGGGCTCAGTCCCTGGTTTCTGCTGACAGCCTGTAAGGCCC--------ACACTCTCTCTAGGCTTTGTGGCCCATCTGACAAGTGGGAGGCTGGTCTGGGAGATGGGACCCTGTAACCCAGAACCCAAGGCTGAGTACAGTCCCTGTGGCT-----------GGAGGTAGTCACGGAGGCCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGTGGTGGAGG--GAGTTGGGGCCAGAGGCCGCTGCAGGCTGGCAGGAGGCCCC-AGGACCACAGTTC-------------------TGTGCCAGGATCTGTT-GGGGAACACCAGGGATGAGCAAGGATGGAGATGGGGTGGCAGGG----CATCGCCCTGGGCAGACCCTTTCACAGGCA---TGTGA-AGGGGT-CAGGGT-GGGGTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGTGCCCATTCTCGTGTCAT-GGGGTTGGCCATGAGTAGGTGGGAGAGAGAGAGCAACAGTTGGAGACCTGCAACTCTGCTTTGGGAGCCG--CTCCAAAAACCGGGGATCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTTAAGGAGGTTGGGGTGGGG----------------------------AGCCAGGTTCTGGGTACTGTAAACCACTGGTTCTGA--------------TGCCCCTCTGTCCCCTG-ACTCCAGACTGTGAGCAGGAC--CCCGTCTTTCGGGTTCTGCGAGACGCTGCACCTACTGGACGGCTGCCAGCTGCCCACCATCCACAC-CAGTGCTGCTGCTCATGCTCTCTGCCCAGCCATGGTGCCCCCTCCTGAGGCCATCAGTGGGTCACCACCCACCGCT-----------GA----CGTTGCCAGGATGCACAGACCAACC-------GACAGACCTCAGTG-CCCACAACGGGCTGTGGAGAAGCTCTT-GCCCC--------CTGCGCCCTAATGGTGCTAACCCTCTCC--CTACCCAGCGGCAGGCTGGGGAACCTCCTCCCCCTCAGAAAAAAAGTATTTTTTTATTCTAACAGTTTGTGTAACCTGTATTATTATTTTACATAACTGAACATCTAT----------CACAGTGTGACTTCATC-CTGGATTTGGCAAATCTTAAAAGTCAGAAACTCTTCCCCCAACCCCTCTGCCCAAAACTCCACTGCAGCAGCACCT-----------CGGTAGGC-GCGGCTTTTCACCGGCTCCTCT-GGGGCAGATCTGCAGGGGGCAGAGCAGCAATCGAGTCCATGACAGCATGGTGTCTGGT--------------CCTCGGAAGCTGG-GTGGCTGCTGCCCAAAGAGGC-CTGTCT--GCAGAGGGTGGGGTTCTGGGGGCAGGAAGGTCTTCTGGGCAGG-GGCACAGCTTGGC---------------CCTTTCTTGCTA--CCTG-----CCTCCAGCTCAGGCTCCCAGCCTCCCCTGGGGCTCCACTCTGTGGTCCTCAGAGACCT--GTTACA---CAGGGATTGGG-
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108931983 1746 - 162156779 AGGCCCAAGAGGTGAAGCAGCGTATCTGAGGTCACCCCGGGTGACCAGGATGCATGCCTACAGATGTACACTTTGGAGCT-CTGCCTGGA-GTTGGGGTGGAGGAGCCTGCCTGCTGCCTTGTGCCCTCTGCCGGGCCTGGGGGATGTCCCAGG---------GGCTGCcgccctcctgctcctcctccctaGGGAGGTCTGCTGGAATAAGCA-GGGCCCGGGCAGCAGTTAGGGGCTGtcagcagt-----------ggcagtggcatCAGGAGCAAGGCCAGGAGGCTGGGAACAAGCCACTTCCCAAAATGGCTCTGATAACT-TGGGGCAGGAGGGCCCAGCCAAGCCTCAGCCC-TGATGAGCACAGCCTGGAGCTGGCCTCCCTCCCCAGT-------------GG--GCCTGGGCTCAGTCCCTGGTTTCCGCTGACAGCCTATAAGGCC----------CACTCACTCTAGGCTTCGTGGCCCACCTGAGAAGTGGGAGGCTGGTCTGGGAGATGGGACCCTGTGACCCAGAACCCGAGGCTGAGTACAGCCCCCATGGCT-----------GGAAGTGGTCACGGAGGCCTGGCAGGACAGATGTAc---------tggggcaggg--ggtggtggtgg--gagttGGGGACAGAGGCCACTGCAGGCTGGCAGGAGGCCCC-GGGACCGTAGTTC-------------------TGTGGCAGGATCTGTT-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGATGGCAGGG----AGTCGCCCTGGGCAGGCTCTTTCACGGGCA---TGTGA-GGGCAT-CAGGGT-GGGGTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGGAGCGCCCGTTCTCGAGTCCT-GGGGTTGGTCATGAGTAGGTGGGACAGAAACAGCAACAGCTGGAGACCTGCAACTCCGGTTCGCGAGCCA--CTCCAAAAACTGAGGCTCTCTACTTGGTGGGGAGCTGCTGGAGCCTCCTTAAGGTGGTTGGGGTAGGG----------------------------AGCCAGGTTCTGGGTACCCTAAACCACTGATTCTGA--------------TGCCTCTCTGCCCCCC--ACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGTGAGAGGCTGCGCCTACTGGGCCGCTGCCAGCTGCCGACCATCCGCATGCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCCACGGCGTCCCCTCCCGAGGCCATCAGCGGGT---TGCCCGCCGCT-----------GA----CTGTGCCAGGATGCACAGACTGACC-------GACAGACCTCAGTG-CCCACCATGGGCTGTGGCGGAGCTTCC-ACCCC--------CTGCGCCCTAATGGTGCTAACCCTCTCC--CTACCCAGCGGCAGGCTGGGG-ACCTCCTCCCCAtc--aaaaaaggtatttttttattCTAACAGTTCGTGTAACATTTATTACGATTTTACATAAATGAGCATCTACCATTCCAAAGCACAGTGTGACTTCATC-CTGGATTTGGGGAATCTTAAAAGTCAGAAACTCTTCCCCCAACCCCTCTGCCCAAAACTCCACCACGGCAGCACCT-----------TGGCAGGC-GCGGCTTTTCACGTGCTCCTCT-GGGGCAGATCTGCAGTGGGCAGAGCAGCAGTCGGGTCCATGAGAGCATGGCGTCTGGTG-AGGCACAGAAGGCCTTGGAAGCTGG-G-GGCTGCTGCCCAGGGAGGC-CTGTGT--GCAGAGGGTGGGGTTCTGGGGGCAGGAAGGTCTTCTGGGCAGG-GGCACAGCTTGGC---------------CCTTACTTGCTG--CCTG-----CCTCCAGCTCAGGCTTCCAGCATCCGCTAGGGCCCCACTCTGTGGTCCTCAGAGACCT--GTTCCA---CAGGGATTGGG-
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1329910 1718 +  24206276 -agcccgagaggtgaagcagcttgcctgaagtcacCCTGGGCGACCAAGATGCAAGCCTACAGATGTGTGCTTTGGAGCT-CTGCCTGGA-GCTTTGGTGGAGGACcctgcctgctgcctcgtgccctctgctgggcctgggggatgt-----------------ctgctgccctcctgctcctcctccCCAGGGAGGTCTGCTGGAGTAAGCA-GGGTCCGGGCAGCAGTTGGGGGCTGTCAGCAGT-----------GGCAGTGGCATCAGGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAGAATAGCTCTGATAACC-TGGGGCAGGAGGGCCCAGCCAAGCCTCAGCCC-TGACGAGCACAGCCCACAGCCGGCCTCCCTCCCCAGT-------------GG--GCCTGGGCTCAGTCCCTGGTTTCCGCTGACAGCCTGTAAGGCC----------CACTCTCTCTAGGCTTTGTGGCCCACCTGAGAAGTGGGAGGCTGGTCTGGGAGATGGGACCCTGTGACGCAGAACCCAAGGCTGAGTACAGTCCCTGTGGCT-----------GGAGGTAGTCACGGAGGCCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGCGGTGGGGG--GAGTTGGGGCCAGAGGCCGCTGCAGGCTGGCAGGAGGCCCC-AGGACCACAGTTC-------------------TGTGCCAGGATCTGTT-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGGTGGCAGGG----CATCGCCCTGGGCAGACCCTTTCACGGGCA---TGTGA-AGGGGT-CAGGGT-GGGGTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGTGCCCATTCTCATGTCAT-GGGGTTGGCCATGAGTAGGTGGGAGAGAGATAGCAACAGTTGGAGACCTGCAACTCTGCTTCGGGAGCTG--CTCCAAAAACCGGGGATCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTAAAGGAGGTTGGAGTGGGG----------------------------AGCCAGGTTCTGGGTACTGTAAACCACTGGTTCTGA--------------TGCCCCTCTGTCCCCTG-ACTCCAGACTGTGAGCGGGAC--CCCGTCTTTCGGGTTCTGTGAGACGCTGTACCTACTGGACGGCTGCCAGCTGTCCACCATCCACAC-CAGTGCTGCTGCTCATGCTCTCTGCCCAGCCATGGTACCCCCTCCTGAGGCCATCAGTGGGTCACCACCCACCGCT-----------GA----CGTTGCCAGGATGCACAGACCAACC-------GACAGACCTCAGTG-CCCACAACGGGCTGTGGAGAAGCTCTC-GCCCC--------CTGCGCCCTAATGGTGCTAACCCTCTCC--CTACCCAGCGGCAGGCTGGGGAACCTCCTCCCCCTCA-AAAAAAAGTATTTTTTTATTCTAACAGTTTGTGTAACCTTTATTATTATTTTACATAACTGAACATCTAT----------CACAGTGTGACTTCCTC-CTGGATTTGGCAAATCTTAAAAGTCAGAAACTCTTCCCCCAACCCCTCTGCCCAAAACTCCACTGCAGCAGCACCT-----------CGGTAGGC-GCGGCTTTTCACCTGCTCCTCT-GGGGCAGGTCTACAGGGGGCAAAGCAGCAATCGAGTCCATGACAGCATGGTATCTGGT--------------CCTCGGAAGCTGG-GTGGCTGCTGCCCAAAGAGGC-CTGTCT--GCAGAGGGTGGGGTTCTGGGGGCAGGAAGGTCTTCTGGGCAGG-GGCACAGCTTGGC---------------CCTTTCTTGCTA--CCTG-----CCTCCAGCTCAGGCTCCCAGCCTCCCCTGGGGCCCCACTCTGTGGTCCTCAGAGACCT--GTTACA---CAGGGATTGGG-
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113756307 1672 - 132174527 aggcctgagaggtgaggcagcttgtgtgaggtcacCCCAGGCGAGCAGGATGCA-GCCTGCAGATGTGCGCTTTGGAGCT-CTGCCTGGA-GCTGAGCTGGAGGAGTCTGCCTGCTGCCTCGTGCCCTCTGCGGGGCCTGGAGGATGGCCCAGGCCCAGGGCTGGCTGCTCCTCTCCTGCTCCTCCTCCCCCGGGAGGTCTGCTGGAGTGAGCA-GGGCCAGGGCGGCAGCTGGGGGTTTTCAGCAGT-----------GACAACAGCATCAGGAGCAAGGCCAGGAGGCTGGAAAAAAGCCACTTCCCAAAATAGGTCTGATAACC-ACAGGCAGGAGGGCCCAGCCAAGCCTCGGCCC-TGACAAGC-----------------------------------------------------CTCAGCCCCTGGTTTCCGCTGACAGCCTGCAAGGTC----------CAGTCTTTCGAGGCTTCGTGGCCTCCCTGAGAAGTGGAAGGCTGGCCTGGGAGATGGGACCCTGTGACCCCAAAGCCGAGGCTGAGTGCAGCCCCCGTGGCT-----------GGAGGCGGTCACAGAGGCCTGGTAGGACAGGTGCAC---------TGATGCAGGA--GGAGGTGCCAG--GAAT-GGGGGCAGAGGCCACTGCAGGCTGGCAGCAGCCCCT-GGGACTGCAGTTT-------------------TGTGCCAGGCTCTATC-AGGGGATTCCAAGGCTGAGCAAGGATGGAGATGGGGTGGTGGGG----CATTGCCCCAGGCAGGCTCTTCCGTGGGCA---TGTGA-GGGGGT-CAGGGT-GGGGTCTCAGGCCCTTTTCTCCAGAAACCTCAG-CCCACCAGCACCTGTTCTCCAATCTTGGGGGTTGGCCATGGGAAGATGGGAGAGAGACAGCCACAGCTGGAGATGTGCAACTCTGGTTCGGGAGCTC--CTCCAGAAACTGGGGCCCTCTGCATAGCAGGGAGCTGCTGGAGACTCCTTAAGGTGACTGGTGTGGGG----------------------------AGCCAGGTTCTGTGTACCCCAAACCA------CTGA--------------TGTCCC-CCGCCCCCT--ACTCCAGGCTGTGAGCGGGACCGCCTGTCATTCGGATTCTGCGAGACACTGCGCCTGCTGGGCCGCTGCCGGTTGCCCACTGTCCGCACCCAGTGCTGCCACTCATGCCCTCCACCCAGCCATGGCACCCCCTCCCGAGGCCATCAGCGGGC---TGCCCGCCGCT-----------GA----CCGCATCAGGATGCACAGACCGACC-------AACAGACCTCAGTG-CCCACCATGGGCTGTGGTGGAGCTCCC-GCCTC--------CTGCGCCCTAATGGTGCTAACCCCCTCTCCCCATCCAGCGGCAGGCTGGGG-ACCTCCTCCCCGTC--AGAAAAAGTATTTTTTTATTATAACAGTTTGTGTAACATTTATTATTATTTTACATAAATGAGCATCTACCATTCCAAAGCACAGTGTGACTTCTTC-TTGGATTTGGAGAATCTT-AAAGTCAGAAACTCTTCTCCTGACTCCTCTGCCCCAATCTCCACTGC-GAAGCACCT-----------CAGCAGACAGCGGCTTTTCACCTGCTCCCCT-GGGGCAGATCTGCTGGGGGCAGAGCAGCAAGTGAGTCTGTGAGAGCAGG-----------------------CCTCGGGAGCCAG-GGGGGTGCTACCCTGGGAGAC-CTGTCT--GCAGAGGGCTGGGTTCT-GGGGCAGGAAGGTTTTCTGGGCAGG-GGTACAGCCTGGC---------------CTTTACTTGCTG--CCTG-----CCTCTAGCTCAGGCACCCAGCTTTCCCTGGGGCCTCACTCTGAGGTCCTCAGAGGCCT---------------------G-
i calJac3.chr10                  C 0 C 0
s mm10.chr9                       90198706 1784 + 124595110 ----TCACTCAGTGCTTAGGTCTGCTGGAGGTCACCCAGGGGAACTAGTGTGTCAG---------------TTTGGAGTTGCTGCCGAAAGGATAGGGTGGAGGGGCTTGTCTGCTGTCTTGTTCCCTCCGCTGCACCTG-GGGATGTCCCAGAC-CAGGGCCCACAGCTGCCCTCCTGTGCTTCCTCCCTAGGGA-ATCTGCAGAAGTAAGCAGGGGTCTGGGCAGCTGT----GGCT-TCAGCAGCAGCAACAGCAAAGCAGTAGCACTGGGAGGAAGGCCAAGGGTCTGGACGCAAGCCACTTTCCAAAATAGTCTT-----CC-CGGGAGAG------CCAGCCAGGCCTCAGATTGTGACAACTAGGGCTGACGACT---CTCCCTTCCCTGTGCCCTGCCaccaggg--gcctga-cccaggctttggttcctactgatgatctctgtggccttggccaagtccaactttctgggcttca----CCACCCAACAA--AATAGGCTGT---------------CCTGCCACACAAAGGTTCAGGGTGAACATGGTC-----------------------------CACAGGAGACTGGGAGGGTGTGTGTGTGTATGGGGGTGGGGCAGTGATGACAGCAAAGG--CATGTGGGACCAATGGAGGTGGCAGACTGTAGAGTGGATGC-ATATTAACAGTGTCTGACACACTGACAAGTGGTGGGCCTGATCCTGTC----CAGTACCAGGGGTGAGCAGGGAGAAAGATGGGGCCGAGAGGTTTACATCGCTGCCAGTAGGCTCTT----GGGTATCTTCTGA-GGTGGTAAAGGAT-GGGGTCTTTGAACTTTTCTTCCAGAAAGCTAAGTCCCAACACTG-----------------TCAGTAGTTCAAGGGCAGGTGAGGCAGGGA---CAAGAGCTGGGGACCTGGGGTTCTGATTCTGGGGCTATCCTTCAGAAACCCAG--TTTCTTGTTGGT-------TGCT--ATTCTTCCTAAGGCAATAGGGAAAGGGGCTTTTCAGTTGAATCACGGGGTGACAAAGTGTGGTTCTGGAGGCCAT-GCCCACTGATTCTGACCACTGCACCTCCTCTCCTCTCTTCCCTTCCCATCCCAGGTTGTGAGCGGGATCGCCTGTCCTTCAATTTCTGTGAGACGCTGCGCCTGCTGGGCCGCTGCCAGCTGCCCACCATCCGCGCTCAGTGCTGCCGTTCATGTCCCCCACTCAGTCGTGGTGTCCCTTCCCGAGGCCATCAGCGGGT---AGCCAGACGGTAAACCGAGGAAGG----CACCATTAGAATGCACAGACTGACCCTTGACACACAGACCTCAGTGCCCCACCACAGGCTGCGGTGGAGCCCCCTGCTCC--------TCGTGCCCTAACGGTGCTAACCCCACCC--CTGCACGGTGGCAGGCTGGGG-ACCCCCTTTCCTTTC-AGAAAAGGTATTTTTTTATTCTAACAGTTTGC---ACATTTGTTATTATTTTACATAAATGAGTATCTACCCTTTCAGAG--TGGTTTGGCCTTGTCTTTGGATCTGGAGACTCTCCAATGT----GACCCCGCCCTACCCACCTCTTGTCAAATGGCTACTACCCTGTCCCCTGTTGGAAGTCAGAGCAGTCAGCAGCTTCTC---TGTTTCTTTGGGGGCAAATCAGCA-TAACCAGCACA------GAGGCCATGAAAA---GCAGCCTAATGTAGACACGCAAGGTCTTGAAGGCGGT-GGAGGTGGCTTCTAGGGAAGCGGTATCC--CCAGAGGGTTACATGGTATGAGCAGGAAGGTCTTT---GCAGGAGGTACAGGTTGGCAAGAGATCCAGGGAGTCCTGTTCAATGTCCCTGATCATTCTTCACCTCTGCCTGCTA-TCTTCCATGAA------------GGTCCTCAGAGACCTGTGTTTCA---CAGAAATAGAG-
i mm10.chr9                      C 0 I 86
s canFam3.chr3                    58222082 1373 +  91889043 CCTCCCCCCGGGTTAAGAGGCTCGCCCGAGGTCACACGGTGCACACAGGATGCGGGTGTGCAGATGCAC-------AGCTGCTGCCCGAA-GCCCGGGTGGAGGACCCAGCCTGCTGCCTCGTGCCCTCTgcgggcccccgggg---------------------ccgcgggcTTTCCTGTCCTCCTCCCCCGGGACGCCCACTAGAG------------------GCAGCTGGGGGCTGTCAGCAGG-----------AGC---------GGGAGCGAGGCCAAGAGGCTGGAATCAAACCACTTCCCAAAATAGCTGCGACCAGCACAGGGCAGCAGGG-CCGGCCAAGCCCCGCCGT-GGACAAGCGTAGCCCGCAGCCTTCCTGTGTCCTCCTT-------------GGGAGCCGGGTTTTACCCCCAGG----------------GTCACACC----------CTCTCTCTTTGGGCCTCAGGGCCTGGCC-----------------TCTTGGAGCTCGGG-TCTGTGA-GTGGAAGCTGAGGCTCAGTAT-GACCCGGGGGCTTGGGGGGCCGGGGGGGCGGTCGGGGGCGTCCAGCAGGGCAGGTGCAC------------GGCAGG---GACGGCGGGGGTCGGGTCGGGGGCCGAGTCTCCTGCAGGCTGG-----------------------TC-------------------TGTGGC-----------------------------------------------------GG----T--------------------------------GGAGG-TGGGGT-CGGGGTGGGGGTCTCAGAACCTTCCCCCTGGAACCCTGA--CTCGGCCTTGCCAGCGCCCCCCTCCC-GAG--------------------------------ACCTCTGGAGTGCTGAGGCCCTGGGGTGGCTGCCG----------GCCGGTGTGATCC---CAGAGGGTGGC--------CCCCCACGGGGTGCT--------GG----------------------------TGCCAGCTCC-------------------ATCCTGA--------------GGGTCC-CTCCCACCCC-AAACCAGGCTGCGAGCGGGACCGCCTGTCGTTCGGCTTCTGTGAGACCCTGCGTCTGCTGGGCCGCTGCCAGCTGCCGGCCGTCCGCACCCAGTGCTGCCGCTCCTgccccccgccgggccacggcgccccctcccgcggccACCAGCGCAT---TGCCCGCCGCT-----------GACCCGCCCCAGCGGGCTGCCCTGACCGACC-------CCCCCACCCAACCC-CCCCAGACGCAC------GGACCTCAT-GCCCCACTGTGGGCTGCACCCCAAAGGTGCTAACCTGGCCT-----GCTGGTGGCAGGCCGGGG-ACCCCTCCCCC-----AGAAAAGGTATTTTTT-----TAATGGTCTGCATAACCTTTATTATTA---TACATAAACGAGCACCTACAGTTTCAGCGTGCAGCCTGGCTTCCTC-TTGCGTCGGGAGAATTTC--AGGTTGGAGCCCGCCCCCCGTCCCCATCCTCCTGAACCGCC----------CGCCC-----------TCACATGC---------TCCCGGGCACCTCC--GGACAGGTCTGGTGG--------------------------------------------------------CCCCCGCAGCTGC-AGAGGTG------GGGCAGGT-CCAACTTGGCAGAGGCCGG-----TGGGGG---------------GGCAGT-GGCCCCGCTTAGC------------------------CTG--CAC------CCCCCACTCCGGGGCCGCAG----AGCCGTGGTTTCATGGTGA------CAGGGTCAC--ATCCCACCTCAGGCAGCCAGG
i canFam3.chr3                   C 0 C 0
e ponAbe2.chr15                   79937211   10 +  99152023 I

a score=869732.000000
s hg38.chr15_KI270850v1_alt          45034 361 +    430880 CCCACCT------TGTCACTTGCAGGGACTGCCCCCTGGA------GTGGTGGGGACTGGGGCCCCCATGGGCACCTCCCTGGCTC-----------------TGTCTGTTCTATCTGTTGACTCTTCTGCAAAAAGCGGGCAGAGAGGGGAAGAGCAGGCTGGCCAATTTTGCCCTACTGTGTCCCCACGTGTCCCTTCAT--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTTGGGTTGGCCCCTTTCCCACCACCAGCCCAAGCAACAGGTTCCTACCATGCTGATCTATGGTCCAGCACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTAGTGCCCACAGCA
s panTro4.chr15_GL392289_random      47688 361 -    187897 CCCACCT------TGTCACTTGCAGGGACTGCCCCCTGGA------GTGGTGGGGACTGGGGCCCCCATGGGCACCTCCCTGGCTC-----------------TGTCTGTTCTATCTGTTGACTCTTCTGCAAAAAGCGGGCAGAGAGGGGAAGAGCAGGCTGGCCAATTTTGCCCTACTGTGTGCCCACGTGTCCCTTCAT--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTTGGAGAGGCCCCTTTCCCACCACCAGCCCAAGCAACAGGTTCCTACCATGCCGATCTATGGTCCAGCACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCT
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18550 359 -     28805 CCCACCT------TGTCACTTGCAGGGACTGCCCCCTGGA------GTGATGGGGACTGGGGCCCCCATGGGGACCTCCCTGGCCC-----------------TGTCTGTTCTATCTGTTGATTCTTCTGCAAAAAGCGGGCAGAGAGGGGAAGAGCAGGCTGGCCAACTGTGCCCTACTGTGTCCTCACGTGTCCCTTCAT--------TTC--TGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTTGGGGTGGCCCCTTTCCCACCACCAGCCCCAGCTACAGGTTCCTACCACGCTGATCTATGGTCTAGCACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112819019 361 - 170124641 CCCACCT------CGTCACTTGCAGGGACTGCCCCCTGGA------GTACTGGGGACTGGGGCCCCCATGGGCACCTCCTTGGCCC-----------------TGTCTATTCTATCTGTTGAATCTTCTGCAAAAAGCGGGCAGAGAGGGGAAAAGCAGGCTGGCCAGCTGTGCCCTACTGTGTCCCCATGTGTCCCTTCAT--------CTCTGTGCCCAGAGATAGGGCCCGGCTAATTGCCACTGCCTCAGGTTGGCCCCTTTCCCACCACCAGCCCCAGCAACAGGTTCCTACCATGCTGATTAACGGTTCAACACCAGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61603929 361 + 171882078 CCCACCT------CGTCACTTGCAGGGACTGCCCCCTGGA------GTACTGGGGACTGGGGCCCCCATGGGCACCTCCTTGGCCC-----------------TGTCTATTCTATCTGTTGAATCTTCTGCAAAAAGCGGGCAGAGAGGGGAAAAGCAGGCTGGCCAGCTGTGCCCTACTGTGTCCCCACATGTCCCTTCAT--------CTCTGTGCCCAGAGATAGGGCCGGGCTAATTGCCACTGCCTCAGGTTGGCCCCTTTCCCACCACCAGCCCCAGCAACAGGTTCCTACCATGCTGATTAACGGTTCAACACCAGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108933729 361 - 162156779 CCCATCT------TGTCACTTGCAGGGACTGCCCCCTGGA------GTGATGGGGACTGGGGCCCCCGGGGGCACCTCCCTGGCCC-----------------TGTCTGTTCTGTCTGTTGACTCTTCTACAAAAAGCGGGCAGAAAGGGGAAGAGCAGGCTGGCCAGCTGTGCCCTACTGTGTCCCCAGGTGTCCCTTCAT--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTCGGGGTGGCCCCTTTCCCACCACCAGCCCCAGCAACAGGTTCCTACCACGCTGATCGATGGTCCAGCACCTGGCACCTGCCTACCcacagccccttcccctcccatAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1331628 361 +  24206276 CCCACCT------CGTCACTTGCAGGGACTGCCCCCTGGA------GTACTGGGGACTGGGACCCCCACGGGCACCTCCTTGGCCC-----------------TGTCTATTCTATCTGTTGAATCTTCTGCAAAAAGCGGGCAGAGAGGGGAAAAGCAGGCTGGCCAGCTGTGCCCTACTGTGTCCCCACGTGTCCCTTCAT--------CTCTGTGCCCAGAGATAGGGCCGGGCTAATTGCCACTGCCTCAGGTTGGCCCCTTTCCCACCACCAGCCCCAGCAACAGGTTCCTACCATGCTGATTGACGGTTCAACACCAGGCACCTGCCCACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113757979 358 - 132174527 CCCACCTTGCAGGTGTCACCTGCAGGGACTGTACCCTGGA------GTGATGGGGGCTGGG-CCCCTGTGGGCAGCTCCCTGGCCC-----------------TCTCTGATGTATCTGTTGACTCTTCTGCAAAAACCAGGCAGAGAGGGGAAGAGCAGGCTGGCCAGCTGTGCCCTTCTATGTCCCCACGTGTCCCTTTAT--------CTCTGTTCCCAGAGATGGGGCTGGGCTAATTCCCACTGCCTCAGGGTGGTCCCTTCCCCACCACCAGCCCCAGAGCCAGGTTCCTACCACGCTGATCTGTGGT----AACCTGGTACCTGCCTACCCACAGCCCCTTCCCCTCCTATAAAATCTAGTCCTATGG----AGAATGTGGTGCCCACAGCA
i calJac3.chr10                  C 0 C 0
s canFam3.chr3                    58223455 343 +  91889043 CCCTTCC------TGTGTCCAGCAGGACCTGCCCCCCAGGGAAGACGGGGAGGGGGCTGGTACCCCGTTA---ACATGCCTGCATCAGAGGAGAGGAGGAGGGTGGCCAGTGGAGCTGGTGACCCC---------------CAGGGACTGGAGCAGATGGGCGGCCACC---GCCTTCCTG-GCCTTTACATGTCCTGTTTTGCCACATGCTCTGTGCTCAGAGACA--ACGGGGCTG---------GTCACAGGTGGTTCCTGCCCCCACTGCCACCTCAAGTGTTGGGCTCCCCCCACGCTGACCTGTG-------ACCTTGCACCTGCCCG-CCACGGCCCCTT-CCCGCCTGCCCAACCTGGGTCCATGGAGCC-------TGTGGACACAGCA
i canFam3.chr3                   C 0 C 0
e mm10.chr9                       90200490  86 + 124595110 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=89111.000000
s hg38.chr15_KI270850v1_alt          45395 32 +    430880 GGGAACAGATGGGCATGAAGGTGCTTTGAAGA
s panTro4.chr15_GL392289_random      48049 32 -    187897 GGGAACAGATGGGCATGAAGGTGCTTTGAAGA
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18909 32 -     28805 GGGAACAGATGGGCATGAATGTGCTTTGAAGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112819380 32 - 170124641 GGGAACAGAGGGGCATGAATGTGCTTTGAAAA
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61604290 32 + 171882078 GGGAACAGAGGGGCATGAAGGTGCTTTCAAAA
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108934090 32 - 162156779 GGGAACAGATGAGCATGAATGTGTTTTGAAAA
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1331989 32 +  24206276 GGGAACAGAGGGACATGAATGTGCTTTCAAAA
i chlSab2.chr29                  C 0 C 0
s calJac3.chr10                  113758337 32 - 132174527 GGGAACAGATGGGCATGAAGGTGCTTTGAAGA
i calJac3.chr10                  C 0 N 0
s mm10.chr9                       90200576 32 + 124595110 GAGAGCGGCTGGGCATGCAGGTACTTTGAAGA
i mm10.chr9                      I 86 C 0
s canFam3.chr3                    58223798 30 +  91889043 GGCAGCAGAGGGGTGTG-AGGTGCCCCAAGA-
i canFam3.chr3                   C 0 C 0
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=15481.000000
s hg38.chr15_KI270850v1_alt          45427 9 +    430880 GGGTCCTGG
s panTro4.chr15_GL392289_random      48081 9 -    187897 GGGTCCTGG
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18941 9 -     28805 GGGTCCTGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112819412 9 - 170124641 GGGTCCTGT
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61604322 9 + 171882078 GGATCCTGT
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108934122 9 - 162156779 GGGTCCTGT
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1332021 9 +  24206276 GGATCCTGT
i chlSab2.chr29                  C 0 C 0
s mm10.chr9                       90200608 9 + 124595110 GGATCCTGG
i mm10.chr9                      C 0 I 26
s canFam3.chr3                    58223828 2 +  91889043 --GT-----
i canFam3.chr3                   C 0 C 0
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=70650.000000
s hg38.chr15_KI270850v1_alt          45436 37 +    430880 CCTGACCAGGGGCGGGAGGCTGGAGAAGGGGCGGACA-----------------
s panTro4.chr15_GL392289_random      48090 37 -    187897 CCTGACCAGGGGCGGGAGGCTGGAGAAGGGGCGGACA-----------------
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18950 37 -     28805 CCTGGCCAGAGGTGGGAGGCTGGGGAAGGGGCAGACA-----------------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112819421 37 - 170124641 CCTGGCCAGGGGTGGGAGGCTGGGGAAGGGGCAGACA-----------------
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61604331 37 + 171882078 CCTGGCCAGGGGCGGGAGGCTGGGGAAGGGGCAGACA-----------------
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108934131 37 - 162156779 CCTGGCcaggggcaggaggctggggaaggggcagacA-----------------
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1332030 37 +  24206276 CCTGGCCAGGGGCAGGAGGCTGGGGAAGGGGCAGACA-----------------
i chlSab2.chr29                  C 0 C 0
s canFam3.chr3                    58223830 45 +  91889043 --------GAGGGAGGCGGCTGGGGAAGGGGCC-ACACGCAACCAGGCTGACCA
i canFam3.chr3                   C 0 C 0
e mm10.chr9                       90200617 26 + 124595110 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=400333.000000
s hg38.chr15_KI270850v1_alt          45473 223 +    430880 ---CTGTCCT-----------------cccaggc---ccaggcccag------------ccctgga----------------tccgaccctggccTCTGGCTGTGAGCCTTAGACTCAGCCGTT-GACAatttcctcctcagccc------tccccctggaaggtgttac-gccccttctacaggt-gggggacactaaggttcagagaggcc------aCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTACTCTCCAGCGTATGACAACCCTGGAC-G---AAAGGCA
s panTro4.chr15_GL392289_random      48127 235 -    187897 ---CTGTCCT-----------------cccaggc---ccaggcccaggcccaggcccagccctgga----------------tccgaccctggcctcTGGCTGTGAGCCTTAGACTCAGCCGTT-GACAATTTCCTCCTCAGCCC------TCCCCCTGGAAGGtgttac-gccccttctacaggt-gggggacactaaggttcagagaggCC------ACCCTGCAG---CCTACAGGGGTCACCTTTCACATTCTACTCTCCAGGGTATGACATCCCTGGAC-G---AAAAGCA
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18987 229 -     28805 ---CTGTCCT-----------------cccaggc---ccaggcccag------------ccctgga----------------tccaaccctggccTCTGGCTGTGAGCCTTAGACTTAGCCATT-GGCAATTTCCTCCTCAGCCCCCACCACCTCCCCGGAAGCTGTTAC-GCCCCCTCTCCAGGT-GGGGGACACTAAGGTTCAGAGAGGCC------ACCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTACTCTCCAGCGTGTGACATCCCTGGAC-G---AAAGGTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112819458 227 - 170124641 ---CTGTCCT-----------CCCAGGCCCAGGC---CCAGGCCCAG------------CCCTGGA----------------TCCAACCCTGCCCTCTGTCTGTGAGCCTTGGACTCAGCCGTT-GACAATTTCCTCCTCAGCCC------TCCCCTTGGAAGGtgttac-accccttctccaggt--ggggacactaaggttcagagaggtc------aCCTTGCAG---CCTACAGGGGTTACCTCTCACATTCTA-TCTCCAGCATATGACATCCCTGGAC-G---AAAGGCG
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61604368 222 + 171882078 ---CTGTCCT-----------------CCCAGGC---CCAGGCCCAG------------CCCTGGA----------------GCTGACCCTACCCTCTGTCTGTGAGCCTTGGACTCAGCCGTT-GACAATTTCCTCCTCAGCCC------TCCCCTTGGAAGGtgttac-accccttctccaggt--ggggacactaaggttcagagaggtC------GCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTATTCTCCAGCATATGACATCCCTGGAC-A---AAAGAGG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108934168 221 - 162156779 ---CTGtcct-----------------cccaggc---ccaggcccag------------ccctgga----------------GCTGACCCTACCCTCTGTCTATGAGCCTTGGACTCAGTTGTT-GACAATTTCCTCCTCAGCCC------TCCCCCTGGAAGGTGTTAT-GCCCCTTCTCCAGGT--GGGGAcactaaggttcagagaggtc------aCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTA-TCTCCAGCATATGACATCCCTGGAC-G---AAAGGCG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1332067 222 +  24206276 ---CTGTCCT-----------------CCCAGGC---CCAGGCCCAG------------CCCTGGA----------------GCTGACCCTACCCTCTGTCTGTGAGCCTTGGACTCAGCCGTT-GACAATTTCCTCCTCAGCCC------TCCCCTTGAAAGGtgttac-accccttctccaggt--ggggacactaaggttcagagaggtc------aCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTATTCTCCAGCATATGACATCCCTGGAC-A---AAAGAGG
i chlSab2.chr29                  C 0 C 0
s mm10.chr9                       90200643 174 + 124595110 ---CCTTCCT-----------------CCCAGG----CTAGGC----------------CCCTGA------------------CTGCCCTTTCCTTCTGGCTGTGAGC-------------------------CATCTTCAGGAG------TCTTC-TGGATGGCATTATGGGTCCTCCTCCAAGT-TTGAGGCCCTGAGGTTC---------------------CAG---------GGGGGCACCTGTCCCATTTTATTTGCCAGAGTGAGGTGCACGTGGAA-GCATGAAGGCA
i mm10.chr9                      I 26 N 0
s canFam3.chr3                    58223875 263 +  91889043 GGCCCCTCCTGGGGAGTGCCACACGCAACCAGGCTGACCAGGCCCCT------------CCTGGGGAGTGGCCTGTGCAGGTCCCAGACCTTACCTCTGGCC-CGAGCCTCAGACAGGACTCTTCTATAACCCGCTCACCAGTCC------TCCTCCTAGAGGGT-TGAC-TTCCCTTCTCCAGATGGGGGGACACCAAGGTTCAGAGGGGCCCAGGTGCCCCTGGGGGCACCTGCAGGGGATGC----CACATTCCA-----CCATGTGTGCCAGTCATGGTCTG---CAATGTG
i canFam3.chr3                   C 0 C 0
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=122091.000000
s hg38.chr15_KI270850v1_alt          45696 71 +    430880 -AATGTAGCCCTGGAGCC---TGCATGTGGC--AGCC--GCAGCCACTCAGGGCTGGGT--GTATGCTGGGGATGGAGAGG
s panTro4.chr15_GL392289_random      48362 71 -    187897 -AGTGTAGCCCTGGAGCC---TGCATGTGGC--AGCC--GCGGCCGCTCAGGGCTGGGT--GTATGCTGGGGATGGAGAGG
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     19216 71 -     28805 -AGTGTGGCCCTGGAGCC---TGCATGTGGC--AGCC--ATGGCCACTCAGGGCTGGGT--GTATGCTGGAGATGGAGGGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112819685 59 - 170124641 -AGTGTGGCCCTGGAGCC---TGCA----------------AGCCACTCAGGGCTGGGT--GTATGCTGAGGACGGAGTGG
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61604590 71 + 171882078 -AGTGTGGCCCTGGAGCC---TGCATGTGGC--AGCC--ACAGCCACTCAGGGCTGGGT--GTATGCTGAGGACGGAGTGG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108934389 71 - 162156779 -AGTGTGGCCCTGGAGCC---TGCATGTGGC--AGCC--ACGGCCACTCAGGGCTGGGT--GTATGCTGGGGATGGAGGAG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1332289 71 +  24206276 -AGTGTGGCCCTGGAGCC---TGCATGTGGC--AGCC--ACAGCCACTCAGGGCTGGGT--GTATGCTGGGGACGGAGTGG
i chlSab2.chr29                  C 0 C 0
s canFam3.chr3                    58224138 81 +  91889043 CATGGTGGTCCCTGAGCAATGTGTACGTTGTGAGGCCATACGGTCACGTGTGGCTGGGTGAGTGTGTGGAGGGTGGGGCGG
i canFam3.chr3                   C 0 I 200
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=321758.000000
s hg38.chr15_KI270850v1_alt          45767 182 +    430880 ACACCACTGAAAATCACTCCTggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcggatcacctaaggtcaggagtttgaaaccagcctggccaatgtggtgaaaccccatctctactaaaaatacaaaaattagccgggtgcagtggtgggcacctgt
s panTro4.chr15_GL392289_random      48433 182 -    187897 ACACCACTGAAAATCACTCCTggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcggatcacctaaggtcaggagtttgaaaccagcctggccaatgtggcgaaaccccatctctacaaaaaatacaaaaattagccgggtgcagtggtgggcacctgt
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     19287 182 -     28805 ACACCATTGAAAATCACTCCTggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggcgggcggatcacttgaggtcaggagtttgaaaccagcctggccaatgtggcaaaaccccatctctgctaaaaatacaaaaattagctgggtgtggtgatgggcacctgt
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112819744 182 - 170124641 ACACCACTGAAAATCCCTCCTggctgggtgcggtggctcacgcctgtaatcccagggctttgggagcctgaggcaggcagatcacctgaggtcaggagtttcaaaccagcctggccaatggggcaaaaccccatctctgctaaaaatacaaaaattagccaggtgcggtggtgggcacctgt
i rheMac3.chr7                   C 0 I 135
s macFas5.chr7                    61604661 182 + 171882078 ATACCACTGAAAATCACTCCTggctgggtgcggtggctcacgcctgtaatcccagggctttgggagcctgaggcaggcagatcacctgaggtcaggagtttcaaaccagcctggccaatggggcgaaaccccatctctgctaaaaatataaaaattagccaggtgcggtggtgggcacctgt
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108934460 181 - 162156779 ACACCACTGAAAATcactcctggctgggtgcagtggctcacgtttgtaatcccagtgctttgggaggct-aggtgggcggatcacctgaggtcaggagtttgaaaccagcctggccaatgtggcaaaaccctgtctctgctaaaaatacaaaaattagccgggtgcggtggtgggcacctgc
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1332360 182 +  24206276 ACACCACTGAAAATCACTCCTggctgggtgcggtggctcacgcctgtaatcccagggctttggcagcctgaggcaggcagatcacctgaggtcaggagtttcaaaccagcctggccaatggggcgaaaccccatctctactaaaaatacaaaaattagccaggtgcggtggtgggcacctgt
i chlSab2.chr29                  C 0 C 0
e canFam3.chr3                    58224219 200 +  91889043 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=138957.000000
s hg38.chr15_KI270850v1_alt          45949 131 +    430880 aatcccagctacttgggaggctgaggaagaagaatcgcttgaacctgggaggcagaggttgcagtgaactgagatcacgcctttgcactccagcctaggcgacagagggaggagactgtgtctcaaagaaa
s panTro4.chr15_GL392289_random      48615 131 -    187897 aatcccagctacttgggaggctgaggaagaagaatcgcttgaacctgggaggcagaggttgcagtgaactgagatcacgcctttgcactccagcctaggcgacagagggaggagactgcgtctcaaagaaa
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     19469 128 -     28805 aatcccagctacttgggaggctgagaaaggagaatcgcttgaacctgggaggcggaggttacagtgagctgagatcgcacctttacacaccagcctgggcaacagag---tgagactccatctcaaaaaaa
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61604843 127 + 171882078 aatcccagctacttgggaggctgaggaaggagaatcgcttgaatcc-gggggtggaggttgcagtaagctgagattgcacctttgcactccagcctgggcgacagag---ggagactgcatctaaaaaaaa
i macFas5.chr7                   C 0 I 15
s papAnu2.chr7                   108934641 121 - 162156779 aatcccagctactcaggaggctgaggaaggagaatcacttgaacccaggaggcggaggttgcagagagctgagatcgcgcctttacactccatcctgggcaacagag---tgagactccatctc-------
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1332542 127 +  24206276 aatcccagctacttgggaggctgagggaggagaatcgcttgaatcc-gggggcggaggttgcagtaagctgagattgcacgtttgcactccagcctgggtgacagag---ggagactgcatctaaaaaaaa
i chlSab2.chr29                  C 0 I 17
e canFam3.chr3                    58224219 200 +  91889043 I
e rheMac3.chr7                   112819926 135 - 170124641 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=249207.000000
s hg38.chr15_KI270850v1_alt          46080 169 +    430880 agaaaagaaa----agaaaaa-aaaTTACTCCTTAGGGACTGAGACCAAGAAAGAGCATCAGAGGCTGAACCCCTTGGTGAAGAGCGTCTGTCCCAGGACTTGGAAGGGAGGGAGGGGAATGTGGCCAGGGGGGCTGCCTGCAGGTGTCTGTCCTGCTGCTCCTCAAATCAACA
s panTro4.chr15_GL392289_random      48746 173 -    187897 agaaaagaaagaaaagaaaaa-aaATTACTCCTTAGGGACTGAGACCAAGAAAGAGCATCAGAGGCTGAACCCCTTGGTGATGAGCGTCTGTCCCAGGACTTGGAAGGGAGGGAGGGGAACGTGGCCAGGGGGGCTGCCTGCAGGTGCCTGTCCTGCTGCTCCTCAACTCAACA
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     19597 160 -     28805 aa------------aaaaaaa-aaaTTACTCCTTAGGGACTGAGACCAAGAAACAGTATCAGAGGCCGAACCCCTCAGTGATGAGCATCTGTCCCAGGACTCAGAAGGGAGGGA-GGGAGCGTGGCCACGGCAGCTGCCTGCAGGTGTGTGTCCTGCTGCTCCCCAACTCAACA
i nomLeu3.chr6_GL398151_2_random C 0 I 5785
s rheMac3.chr7                   112820061 165 - 170124641 agaaaaGAAA----AGAAAAATAAATTACTCCTTAGGGACTGAGACCAAGAAACAATATCAGAGGCTGAACCCCTTGGCAATGAGCATCTGTCCCAGGACTT----GGGAGGGA-GGGAGCATGGACAGGGTGGCTGCCTGCTGGTGCGTGTCCTGCTGCTCCCCAACTCAACA
i rheMac3.chr7                   I 135 C 0
s macFas5.chr7                    61604985 165 + 171882078 agaaaagaaa----agaaaaaTAAATTACTCCTTAGGGACTGAGACCAAGAAACAATATCAGAGGCTGAACCCCTTGGCAATGAGCATCTGTCCCAGGACTT----GGGAGGGA-GGGAGCATGGACAGGGTGGCTGCCTGCTGGTGTGTGTCCTGCTGCTCCCCAACTCAACA
i macFas5.chr7                   I 15 C 0
s papAnu2.chr7                   108934762 165 - 162156779 ---aaaaaaa----aaaaaaaaaagtgactcctTAGGTACTAAGACCAAGAAACAGTATCAGAGGCTGAATCTTTT-GTGATGAGTGTCTGTCCAAGGActtggaagggaggga-gggagcgtgACCAGGGCGGCTGCCTGCAGGTGCGTGTCCTGCTGCTCCCCAATTCAACA
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1332686 164 +  24206276 agaaaaGAAA----AGAAAAATAAATTACTCCTTAGGAACTGAGACCAAGAAACAATATCAGAGGCTGAACCCCTTGGCAATGAGCATCTGTCCCAGGACTT----GGGA-GGA-GGGAGCATGGCCAGGGTGGCTGCCTGCTGGTGCGTGTCCTGCTGCTCCCCAACTCAACG
i chlSab2.chr29                  I 17 C 0
e canFam3.chr3                    58224219 200 +  91889043 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=227759.000000
s hg38.chr15_KI270850v1_alt          46249 178 +    430880 TGCTCACCtcatttcacaccaacacgccccattctcagaggaggagcccaaggccctaagaggaagtaactggcccaaggacacatgccctagtgacacagGCCCATCCTAGGCGCCGACTGCCCACCTCCAAGTTCCAGGCCACTCTGAGCAGGTGAAAGAGGGAGAGGGCCCCAAG
s panTro4.chr15_GL392289_random      48919 178 -    187897 TGCTCGCCTCATTTCACAccaacacgccccattctcagaggaggagcccaaggctctaagaggaagtaactggcccaaggacacatgccctagtgacacaggcccatcctaggcgccgactgcccacctccaagttccagGCCACGCTGAGCAGGTGAAAGAGGGAGAGGGCCCCGAG
i panTro4.chr15_GL392289_random  C 0 C 0
s rheMac3.chr7                   112820226 178 - 170124641 TGCTCACCTCATTTCACAccaacacaccccatcctcagaggaggagcccaaggctctgagaggaagtaactggcccaagggcacatgccttgatgacacagtcaattcctaggctctgactgcccacctccaagttccagGCCACCCTAAGCAGGTGGAAGAGGGAGAGGGCCCCAAG
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61605150 178 + 171882078 TGCTCACCTCATTTCACAccaacacaccccatcttcagaggaggagcccaaagctctgagaggaagtaactggcccaagggcacatgccttgatgacacagtcaattcctaggctctgactgcccacctccaagttccagGCCACCCTAAGCAGGTGGAAGAGGGAGAGGGCCCCAAG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108934927 178 - 162156779 TGCTCACCTCATTTCACACCAACACACCCCATCCTCAGAGGAGGAGCCCAAGGCTCTGAGAGGAAGTAATGGGCCCAAGGGCACATGCCCTGCTGACACAGGCCCATCCTAGGCTCCAACTGCCCACCTCCAAGCTCCAGGCCACCCTGAGCAGGTGGAAGAGGGAGAGGGCCCCGAG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1332850 178 +  24206276 TGCTCACCTCATTTCACAccaacacaccccatcctcagaggaggagcctaaggctctgagaggaagtaactggcccaagggcacatgccttgatgacacagtcaattcctaggctctgactgcccacctccaagttccagGCCACCCTAAGCAGGTGGAAGAGGGAGAGGGCCCCAAG
i chlSab2.chr29                  C 0 C 0
e canFam3.chr3                    58224219 200 +  91889043 I
e nomLeu3.chr6_GL398151_2_random     19757 5785 -     28805 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=341301.000000
s hg38.chr15_KI270850v1_alt          46427 264 +    430880 CAGGCCCCAGCTATGGCTTTGCACAGAGAGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTTCCTGGGAAGGCTAGCGTGAGTCCCAGCCCCGCTGTGCTGACCGAGGGTGGAGGAGCGTCAGACGTGCTTCCTGTCTGTCTGCAGCAGCCAGGCTGGCCCAGCAAGAC-CTGGGGACCCACGCTCTGAGTCATGGGTTCCCAGGCCTTAGTCAGAACTGCCCC----TGGTGGCAGTCCCTTCCAAGGGGTAAGGAGCAGGGCCT
s panTro4.chr15_GL392289_random      49097 264 -    187897 CAGGCCCCAGCTATGGCTTTGCACAGAAAGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTTGCTGGGAAGGCTAGCGTGAGTCCCAGCCCCGCTGTGCTGACCGAGGGTGGAGGAGCGTCAGGCGTGCTTCCTGTCTGCCTGCAGCAGCCAGGCTGGCCCAGCAAGAC-CTGGGGACCCACGCTCTGAGTCATGGGTTCCCAGGCCTTAGTCAGAACTGCCCC----TGGTGGCAGTCCCTTCCAAGGGGTAAGGAGCAGGGCCT
i panTro4.chr15_GL392289_random  C 0 C 0
s rheMac3.chr7                   112820404 269 - 170124641 CAGGCCGCAGCTGTGACTTTGCATAGAGAGGGCAGCCTGCCAGAGTTCACTCAGGAAAGCAAGTCGCTCAGCAAGCTAGCATGAGTCCCAGCCCCGCTGTGCTGCCTGAGGTTGGAGGAGCGTCAGACGTGCTTCCTATCTGTCTGCAGCAGCCCGGCTGGCCCAAAGAGACTCTGGGGACCCATGCTCTGAGTCATGGCTTCCCAGGCCTTAGTCAGAACTAAGTCAGAAGGGTGGCAGTCCCTTCCAAGGGGTAGGGAGCAGGGCCT
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61605328 269 + 171882078 CAGGCCGCAGCTGTGACTTTGCATAGAGAGGGCAGCCTGCCAGAGTTCACTCAGGAAAGCAAGTCGCTCAGCAAGCTAGCATGAGTCCCAGCCCCGCTGTGCTGCCTGAGGTTGGAGGAGCGTCAGACGTGCTTCCTATCTGTCTGCAGCAGCCCGGCTGGCCCAAAGAGACTCTGGGGACCCATGCTCTGAGTCATGGCTTCCCAGGCCTTAGTCAGAACTAAGTCAGAAGGGTGGCAGTCCCTTCCAAGGGGTGGGGAGCAGGGCCT
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108935105 265 - 162156779 CAGGCCCCAGCGGCGGCTTTGCACAAAACGGGCAGCCTGCCAGAATTCACGCAGGAAAGCAAGTTGCTGGGCAAGCTAGCGTGAGTCCCAGCCCTGCTGCGCTGCCCGCGGGTGGAGGAGCGTCAGGAGTGCTTCCTGTCTGTCTACAGCAGCCCAGCTGGCCCAAAGAGACCCTGGGGACCCATGCTCTGAGTCATGGCTTCCCAGGCCTTAGTCAGAACTGCTCC----TGGTGGCAGCCCCTTCCAAGGGGTGGGGAGCAGAGCTT
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1333028 269 +  24206276 CAGGCCGCAGCTGTGACTTTGCATAGAGAGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTCGCTCAGCAAGCTAGCATGAGTCCCAGCCCCGCTGTGCTGCCTGAGGTTGGAGGAGCGTCAGACGTGCTTCCTATCTGTCTGCAGCAGCCCGGCTGGCCCAAAGAGACTCTGGGGCCCCATGCTCTGAGTCATGGCTTCCCAGGCCTTAGTCAGAACTAAGTCAGAAGGGTGGCAGTCCCTTCCAAGGGGTGGGGAGCAGGGCCT
i chlSab2.chr29                  C 0 C 0
s canFam3.chr3                    58224419 194 +  91889043 CAGGCCCCA-TGGTGTCTTCACGCACAGACGGTGG---GTCTGAGGTCACTCAGGAAAGTGAGTCACCGAG---GCATGCGAGAGGC------------------------GGGCAGGGGCATCAGA----CTTCCTG--TGTTTGCAACAGTCCTGC-GGCCTGAGGAGGCCCTGGGGACCCACGCACTG-----------TCCA-------------------------CTGCAGCAG-CCCTTACAAGGAAGGGGGAAGGGGGCCT
i canFam3.chr3                   I 200 N 0
e nomLeu3.chr6_GL398151_2_random     19757 5785 -     28805 I
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=33392.000000
s hg38.chr15_KI270850v1_alt          46691 35 +    430880 GTCGACTTGCTCCTGACCCACACACTGAAC-----CAGTC
s panTro4.chr15_GL392289_random      49361 35 -    187897 GTCGACTTGCTCCTGACCCACACACTGAAC-----CAGTC
i panTro4.chr15_GL392289_random  C 0 C 0
s rheMac3.chr7                   112820673 30 - 170124641 GTTGACTTGCTTCTGACCCACACACTGAGC----------
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61605597 30 + 171882078 GTTGACTTGCTTCTGACCCACACACTGAGC----------
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108935370 35 - 162156779 GTCGACTTGCTCCTGACCCACACACTGAGCCAGTC-----
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1333297 30 +  24206276 GTTGACTTGCTCCTGACCCACACACTGAGC----------
i chlSab2.chr29                  C 0 C 0
e nomLeu3.chr6_GL398151_2_random     19757 5785 -     28805 I
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=600.000000
s hg38.chr15_KI270850v1_alt          46726 1 +    430880 C
s panTro4.chr15_GL392289_random      49396 1 -    187897 C
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     25542 1 -     28805 C
i nomLeu3.chr6_GL398151_2_random I 5785 C 0
s papAnu2.chr7                   108935405 1 - 162156779 C
i papAnu2.chr7                   C 0 I 4717
e chlSab2.chr29                    1333327 0 +  24206276 C
e macFas5.chr7                    61605627 0 + 171882078 C
e rheMac3.chr7                   112820703 0 - 170124641 C
e ponAbe2.chr15                   79937211 10 +  99152023 I

a score=750047.000000
s hg38.chr15_KI270850v1_alt          46727 442 +    430880 CTAGGAACATCATCCTGGGCAT-GCCATACCTGTCGTGCAGTCTCAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAG----CCTGGGAGTGCTGAGAGCCAAATCCACTGCAAAGCAGGGCTGATAGTCAGGGCCCCACCTCATCTATCTGTCGGCAATCCAGTGGT-ATCTAGGTGAGAGTCCCATACACACGGTCATCCCACAACACACTCCACACTCCACAGGCCAGGCGGGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCACCATAGCTGCTAGTGTGTGACCGAAGGCAGGGTCCCTGGCCCCCGCTGAATCACTATCGCCGACCAGCAGGCTCACACACCTTGGCCTGTTGCTCCTAGGGGTCGCCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCGCCTAGCGAGCCCACCTG
s panTro4.chr15_GL392289_random      49397 442 -    187897 CTAGGAACATTATCCTGGGCAT-GCCGTACCTGTCGTGCAGTCTGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAG----CCTGGGAGTGCTGAGAGCCAAATCCACTGCAAAGCAGGGGTGATAGTCAGGGTCCCACCTCATCTATCTGTCGGCAATCCAGTGGT-ATCTAGGTGAGAGTCCCATACACACGGTCATCCCACAACACACTCCACACTCCACAGGCCAGGTGGGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCACCATAGCTGCTAGTGTGTGACCGAAGGCAGGGTCCCTGGCCCCCGCTGAAGCACTATCGCCGACCAGCAGGCTCACACACCTTGGCCTGTTGCTCCTAGGGGTCGCCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCGCCTAGCGAGCCCACCTG
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     25543 431 -     28805 CTAGGAACATCATCCTGGGTTTCACCATACCTGTCGTGCAGTCTGAGTCATGCTGCCA-------GTATCCAGCTCCCAG----CCTGGGAGTGCTGAGAGCCAAATCCACTGCAAAGCAGGGGTGATAGTCAAGGTCCCACCTCATCTATCTGTCGGCAATCCAGTGGTGATCTAGGTGAGAGTCCCATACACACGGTCATCCCACAA-------CACACTTCACAGGCCAGGCAGAGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAGCATGTGACTGAAGGCAGGGTCCCTGGCCCCCACTGAAGCACTACCGCTGGCCAGCAGGCTCACCCACCTTGGCCTGTTGCTCCTAGAGGTCGCCTGTGCTATTCAGCCAACAGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCTGCCTAGCAAGCCTGCCTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac3.chr7                   112820703 441 - 170124641 CTAGGAACATCATCCTGGGCAT-GCCATACTTGTCGTGCAGTCTGAGTCAAGCTGCCAGGGCAGGGTATCCAGCTCCCAGCCTCCCTGGGAGTGCCGAAAGCCGAATCCACTGCAGAGCAAGGGTGATTGTCAGGGTCCCACCTTCTCTATCTGTTGGCACTCCAGTGGCGATCTAGGTGAGAGTCCCATGCACATGGTCATCCCACAA-------CACACTCCACAGGCCAGGTAAGGACACACAGCCCCCTTCCCTCTCTCCCAGGTACCATCATAGCTGCTAGCGTGTGACCAAAGGCACGGTCCCTGGCCCCCACTGAAGCATTACCACTGGCCAGTGGGCTCACACACCTTGGTCTGTTGCTCCTAGAGGTCACCTGTGCTATTCAGCCAAGGAGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCACCTAGTGAGCTCACCTG
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61605627 441 + 171882078 CTAGGAACATCATCCTGGGCAT-GCCATACTTGTCGTGCAGTCTGAGTCAAGCTGCCAGGGCAGGGTATCCAGCTCCCAGCCTCCCTGGGAGTGCCGAAAGCCGAATCCACTGCAGAGCAAGGGTGATTGTCAGGGTCCCACCTTCTCTATCTGTTGGCACTCCAGTGGCGATCTAGGTGAGAGTCCCATGCACACGGTCATCCCACAA-------CACACTCCACAGGCCAGGTAAGGACACACAGCCCCCTTCCCTCTCTCCCAGGTACCATCATAGCTGCTAGCGTGTGACCAAAGGCACGGTCCCTGGCCCCCACTGAAGCATTACCACTGGCCAGTGGGCTCACACACCTTGGTCTGTTGCTCCTAGAGGTCGCCTGTGCTATTCAGCCAAGGAGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCACCTAGTGAGCTCACCTG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108940123 428 - 162156779 CTAGGAACATCATCCTGGGCAC-ACCGTACCTGTCGTGCAGTCTGAGTCATGCTGCCAGGGCAGGTCAtccagctcccag----cctgggagTGCCGAGAGCCGAATCCACTGCAGAGCAGGGGTGATAGTCAGGGTCCCACCTCTTCTATCTGTCGGCAATCCAGTGGCGATCTAGGTGAGAGTCccacacacacggtcatcccacaa-------cacactccacaggccaggcagggacacacagcccctttccctccctcccaagTGCCATCATAGCTGCTATTGTGTGACCAAAGGCAGGGTCCCTGGCCCCCACTGAAGCACTACCACTGGCCAGCGGGCTCACGCGCCTTGGCCTGTTGTTCCTAGAGGTTGTCTGTGCTATTCAGCCAATGGGACCACAGTG---------CCAGCTGAGCTCCGCCTAGCGAGCCCACCTG
i papAnu2.chr7                   I 4717 C 0
s chlSab2.chr29                    1333327 441 +  24206276 CTAGGAACATCATCCTGGGCAT-GCCGTACTTGTCGTGCAGTCTGAGTCAAGCTGCCAGGGCAGGGTATCCAGCTCCCAGCCTCCCTGGGAGTGCCGAAAGCCGAATCCACTGCAGAGCAAGGGTGATTGTCAGGGTCCCACCTTCTCTATCTGTCGGCACTCCAGTGGCGATCTAGGTGAGAGTCCCATGCACACGGTCATCCCACAA-------CACACTCCACAGGCCAGGTAAGGACACACAGCCCCCTTCCCTCTCTCCCAGGTACCATCATAGCTGCTAGCGTGTGACCAAAGGCAGGGTCCCTGGCCCCCACTGAAGCATTACCACTGGCCAGTGGGCTCACACACCTTGGTCTGTTGCTCCTAGAGGCCGCCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCACCTAGTGAACTCACTTG
i chlSab2.chr29                  C 0 C 0
e ponAbe2.chr15                   79937211  10 +  99152023 I

a score=1246207.000000
s hg38.chr15_KI270850v1_alt          47169 586 +    430880 CCTCTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCCCACGC-CCGCCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCCAGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGAGGACCCTGGGATTTTGGACCACCCAGAGGGGCCTCTGGCACTCACTCCAGTCATCCATCCCTTATAGCTTCACCATTTTTGGTTTAAGCAGTGTTCCCTTTCTATCAGGCCTGGTGGCTGTTGGGTGGGGCTCCCCAAGCAAGAGGTGGCCCTGGGCC-GTGAGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCGAGGGGGCTGAGCATTCGTCTGAACTATGGGTGGACTGCCTGGGTGCCATGAAAGAGGCCAGCGTGTGTGGGGTGGGGAGGGCCGCCGCAGTCCCCAGGCACTACCTATGAAGCTCTGGCTTCTCCCTCCATCTCCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACCTTGCCATGCCCAC-ACCTACGCCCTCCCCTCCCCGG
s panTro4.chr15_GL392289_random      49839 586 -    187897 CCTCTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCCCACCC-CCGCCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCCGGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGAGGACCCTGGGATTTCGGACCACCCAGAGGGGCCTCTGGCGCTCACTCCAATCATCCATCCCTTATAGCTTCACCATTTTTGGTTCAAGCAGTGTTCCCTTTCTATCAGGCCTGGTGGCTGTTGGGTGGGGCTCCCCAAGCAAGAGGTGGCCCTGGGCC-GTGAGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCGAGGGGGCTGAGCATTCACCTGAACTATGGGTGGACTGCCTGGGTGCCATGAAAGAGGCCAGCGTGTGTGAGCTGGGGAGGGCCGCCGCAGCCCCCAGGCACTACCTATGAAGCTCCGGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACCTTGCCATGCCCAC-ACCTACGCCCTCCCCTCCCCGG
i panTro4.chr15_GL392289_random  C 0 C 0
s ponAbe2.chr15                   17468397 560 -  99152023 CCTTTCCTGCCACGGAGTCTCCCTCTTTTGCTTTTCCCAGCAGGAAAGGCCCAGCCTCACCTATGTAACCTGCAGCCC----C-CCGCCAACCAGCTGAGGCTCCCCTCTTAGACTTAGAGGTCGGTGGCAAGTGGCATCCGGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGTGGACCCTGAGCT----GACTGCCCAGAGGGGCCTCTGGTGCTCACTCCAGCCAGCCATCCCTTATAGCTCCACCA-TTTTGGTTCAGGCAGTGTTCC--TTCTGTCAGGCTTGGTGGCTGTTGGGTGGGGCTCCCCAAGCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGACGGGGTGACCAGAGAAGAGGGAAGCCCGAGGGGGTCGAGCATTGGTCCAAACTATGGGTGGATTGCCT-GGTGCCATGAGAGAGGCCAGCGTGTGTGGGGTGGGGAGGGCTGCTGCAGCCCCCAAGCA------------CTCCAGCTTCTCCCTCCATCTTCCTCCCCTTTCTCTTCCAGCCC--CTTTACCAGGAACCTTGCCACGCCCAC-ACCTAAG-CCTTCCCTCCCCGG
i ponAbe2.chr15                  n 10 C 0
s nomLeu3.chr6_GL398151_2_random     25974 576 -     28805 CGTTTCCTGCCACGGACTTTCTCTCTTCTGCTTTTCCCAGCAGGAAGGG-CCAGCCTCACCTATGCAACGTGCAGCCC----C-CTGCCAACCAGGTGAAGCTCCCCTCTTAGACTGACAAGTCTATGGCCAGTGGCATCTGGCTACCTGCACTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGGCCCTAGGCTTTCTGACCACTCAGAGGGGCCTCTGGCACTCACTGCAGCCGTCCATCCCTTATAGCTTCACCA-TTTTGGTGCAAGCAGTGTTCC----TTACCAGGCCAGGTGGCTGTTGGGTGGGGTTCCCCAAGCAAGAGGTGGCCCTGGGCC-ATGGGTTGGAAGACAGAGTGACCAGAGAAGAGAGAAGCCTGAGGAGGCTGAGCATTGGTCTGAACTATGGGTGGACTGCCTGGATGTCATGAGAGAGGCCAGCGTGTGTGGGCTGGGGAGGGCCGCTGCAGTCCCCAGGCACTACATGTGAAGCTCTGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGTCCCTCTTTTCCAGGAACTTTGccacacccac-acctgcacccgcccctccccaa
i nomLeu3.chr6_GL398151_2_random C 0 I 1
s rheMac3.chr7                   112821144 583 - 170124641 CCTGTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCTAGCCTCACCTATGCAACCTGCAGCCC----CTCCACCAACCAGTCGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCTGGCTGCCTGCCCTCCCTGCCTTCCCCAGTGTCCCCTCAGAGGACCCTGGGCTTTCAGACCACACAGAGGGGCCTCTGGCGCTCACTCCAGTCATCCATCCCTTATAGCTTCGCCA-TTTTGGTCCAAGCAGCACCCCTTCTCTAACAAGCCTGGTGGCTGTTGGGTGGGGCTCCCCAAGCAAGAGGTGGCCCAGAGCC-GTGGGTTGGAAGACAGGGTGACCAGAGAAGGGAGAAACCCAAGAGGGCTGAGCATTGGTCTGAACTATGGGTGCACTGCCTGGGTGCCTTGGGAGAGGCCAGCGTGTGTGGGGTGGAGATGGCTGCCACAGCCCCCAGGCACCGCCTAAGAAGCTTCAGCTTCTCCCTCTATCTTCCTCCCCTTTCCCTTCCAGTCCTTGTGTTCCAGGAACCTTGCCACACCCGCAACCTGCGCCCTTCCCTCTCCAG
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61606068 583 + 171882078 CCTGTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCTAGCCTCACCTATGCAACCTGCAGCCC----CTCCACCAACCAGTCGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCTGGCTGCCTGCCCTCCCTGCCTTCCCCAGTGTCCCCTCAGAGGACCCTGGGCTTTCAGACCACACAGAGGGGCCTCTGGCGCTCACTCCAGTCATCCATCCCTTATAGCTTCGCCA-TTTTGGTCCAAGCAGCACCCCTTCTCTAACAAGCCTGGTGGCTGTTGGGTGGGGCTCCCCAAGCAAGAGGTGGCCCAGAGCC-GTGGGTTGGAAGACAGGGTGACCAGAGAAGGGAGAAACCCAAGAGGGCTGAGCATTGGTCTGAACTATGGGTGCACTGCCTGGGTGCCTTGGGAGAGGCCAGCGTGTGTGGGGTGGAGATGGCTGCCACAGCCCCCAGGCACCGCCTAAGAAGCTTCAGCTTCTCCCTCTATCTTCCTCCCCTTTCCCTTCCAGTCCTTGTGTTCCAGGAACCTTGCCACACCCGCAACCTGCGCCCTTCCCTCTCCAG
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108940551 574 - 162156779 CCTTTTCTGCCACGGACTCTCCCTCTTCTGCTTTTCCCAGTAGGAAAGGCCCAGCTTCACCTATGCAACCTGCAGCCC----C-CCATCAACCAGTTGAGGCTCCCCTCGTAGATTTATAAGTCTATGGCCAGTGGCATCCGGCTAcctgccctccctgccttccccaggCTCCCTTCAGAGGGCCCTGGTCTTGCTGACCACCCAGAGGGGCCTCTGGCACTCACTCCAGCCATCCATCCCTTATAGCTTCACTA-TTTTGGTTCAAGCAGTGTTCCTTAT----CAGGCCAGTTGGCTGTTGGGTGGGGCTCCCCAAGCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAGCCCAAGGGGGCTGAGCATTGGTTTGAACTATGGGTGTACTTCCTGGGTCCCATGAGAGAGGCCAGCGTGTGTGGGCTGGGGAGGGCTGCCACATCCCCCAGGCACCACCTGTGAAGCTCTGGCT----CCTCCgtcttcctcccctttcccttccagcCCCTCTTTTCTAGGAACCTTGCCACACCCAC-ACCtgtgccctcccctccccag
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1333768 583 +  24206276 CCTTTCCTGCCATGGACTCTCCCTCTTCCGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCC----CTCCACCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCTGGCTGCCTGCCCTCCCTGCCTTCCCCAGTGTCCCCTCAGAGGACCCTGGGCTTTCAGACCACACAGAGGGGCCTCTGGCACTCACTCCAGTCATCCATCCCTTATAGCTTCACCA-TTTTGGTCCAAGCAGCACTCCTTCTCTAACAAGCCTGGTGGCTGTTGGGTGGGGCTCCCCAAGCAAAAGGTGGCCAAGAGCC-GTGGGCTGGAAGACAGGGTGACCAGAGAAGGGAGAAACCCAAGAGGGCTGAGCATTGGTCTGAACTATGGGTGCACTGCCTGGGTGCCTTGGGAGAGGCCAGCGTTTGTTGGGTGGAGACGGCTGACACAGCCCCCAGGCACCGCCTAAGAAGCTTCAGCTTCTCCCTCTATCTTCCTCCCCTTTCCCTTCCAGTCCCTGTGTTCCAGGAACCTTGCCACACCCGCAACCTGCGCCCTTCCCTCTCCAG
i chlSab2.chr29                  C 0 C 0

a score=2228154.000000
s hg38.chr15_KI270850v1_alt          47755 1522 +    430880 -CCCTCCACAGCTGCTGCAGCGCACCCATACTCTGCACTTGCCTCACCAGCTCTGGCTTTTCTCTAACCCGTTTTCTCTCTGCTTTCTCTCCAACTGCCAGCTGATTGGGTCAGGCAAGTCCATCCCATCCGGGGAGCCCCAGGCCCCACTTCGACCTCTAAAC-AGATTCCTCCTCTTCTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGTGGGTGTCCTGTGACTTGACAGTGGCTCCCCCAGCCCCAAAGCCAGCCCCCTTCTTCTGTGACTT-AGTCTGTTGTAGTGGTGAGCTGACACATCCAGGTGTGACCGTTGCTGAAAACTTGTGCCCCCTCTGTGGTATGCCCCTGCCCTGTTCtataaatagctataaattatcatatatatacacatacacaaactcacacacacacacacatatatatatatacacatatacaTGTGGTCGACTGCCTCGCCTCTAGCACTGGGAATCAGTCCCCGTGCTGTGCTTGTGGAGTCTTGTAGCCCAGCAAGAGGAAGCTGTCTCCTGACATCGCCCCTCCAAAGTGCACCACCTCCAGTGAGCTTCCGGGACATGCGCGGCCTATGGACAGCCAGCCCCCGCCATCCCTCCCGCCCTTCTGGCCAAGCATGGCGGTGCTGTGCAGGCAGCTGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTCGGCTGAG----AAACCCATTTCTGAATGACAGAGAATGTGTCCTCTGCTGGCTG-TGTTCTCTATAGAGCTCAGGGGAGGGAAGAGGCCAAGCCATTTTTAGGGTGCTGTTGGCAGCAGTGAAAAGGTCACACCCTTTTCAAGGGACACTTTTCCTGGAAAGTCCCTGGAGCTTAGCTGGCTCTTATTCTGTGAAGCCGGCTCTGGCCAGTAGGGCACAGGGCCCTGAACTCAGCCTGGAAGGAGCCTGTGGGGCAGCCGGCACTCTGGAGGGACAG-----ACAGGCCACCCGGTGCAGACAGGAGAGGGAGGCAGGGGGACGGAATGGAAGACACGTGGGGTGGATGGAAGTCAGTGCCCTTGGGCACTGGTATCTGTCTTCCTGACCACAGCTAGATCAGGCTTCTCAACCTGTTGGCTCTCAGGGCCGGACTATACTCCAGAGGCGCCATGGCAGTCCTCGTGAAATCCACCAGGTATCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATTCCCCACAGCCCAGCTGGACATGCTGAGACACTCTGGGGCTCCTCATTGAGTGGGAAAAACTGCAGGACCCAGTGAGGGAAACAGGAACATGCCAGGCCGAGCAGTATGGCTAAATCCATTTATTCcaaaatcaaaagcgaaccaaaacaaaaac--------aaaaaaacaaaacaaaacaaaaAAGGGGTCCCATCACCAGGG-AGCCATGACGCCATCCCCACCCCCATCATCGCTCCTATGCTAACAATGAATAAGTTTCCCAGCCGCGAATAATTATAAGAACCTCTTCCTCATATGCCAGCTGCAACCTCCGCTAGGTA--CA
s panTro4.chr15_GL392289_random      50425 1524 -    187897 -CCCTCCACGGCTGCTGCAGCGCACCCATACTCTGCACTTGCCTCACCAGCTCTGGCTTTTCTCTAACCCGTTTTCTCTCTGCTTTCTCTCCAACTGCCAGCTGATCGGGTCAGGCAAGTCCATCCCATCCTGAGAGCCCCAGGCCCCACTTCGACCTCTAAAC-ACATCCCTCCTCTTCTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCTCCCCCAGCCCCAAAGCCAGCCCCCTTCATCTGTGACTTAAGTCTGTTGTAGCGGTGAGCTGACACGTCCAGGTTTGACCATTGCTGAAAACTTGTGCCCCCTCTGTGGTATGCCTCTGCCCTGTTCTGTAAATAGCTATAAATTCTCATATATatacacatacacatacacacacacacacacac------acacatacatatatacaTGTGGTCGACTGCCTCACCTCTAGAACTGGGAATCAGTCCCCGTGCTGTGCTTGTGGAGTCTTGTAGCCCAGCAAGAGGAAGCTGTCTCCTGACATCGCCCCTCCAAAGTGCACCACCTCCAGTGAGCTTCCGGGACATGCGCGGCCTGTGGACAGCCAGCCCCTGCCATCCCTCCCGCCCTTCTAGCCAAGCATGGCGGCACTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTCGGCTGAG----AAACCCATTTCTGAATGACAGAGAATGTGTCCTCTGCTGGCTG-TGTTCTCTATGGAGCTCAGGGGAGGGAA-AAGCCAAGCCATTTTTAGGGTGCTGTTGGCAGCAGTGAAAAGGTCACACCCTTTTCAAGGGACACTTTTCCTGGAAAGTCCCTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCCGGCTCTGGCCACTAGGGCACAGGGCCCTGAACTCAGCCTGGAGGGAGCCTGTGGGGCAGCAGGCACTCTGGAGGGACAG-----ACAGGCCACCCGGTGCAGACAGGAGAGGGAGGCAGGGGGATGGAATGGAAGACACCTGGGGTGGATGGAAGTCAGTGCCCTTGGGCACTGGTATCTGTCTTCCTGACCACAGCTAGATCAGGCTTCTCAACCTGTTGGCTGTCAGGGCCGGACTATACTCCATAGGCGCCATGGCAGTCCTCGTGAAATGCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATTCCCCACAGCCCAGCTGGACATGCTGAGACACTCTGGGGCTCCTCGTTGAGTGGGAAAAACTGCAGGCCCCAGTGAGGGAAACGGGAACATGCCAGGCCGAGCAGTATGGCTAAATCCATTTATTCcaaaatcaaagcaaaacaaaaacaaaaacaaaaacaaaaaaaaacaaaacaaaacaaaaaAGGGGTCCCATCACCAGGG-AGCCATGACCCCATCCCCGCCCCCATCATCGCTCCTATGCTAACAATGAATAAGTTTCCCAGCCGCGAATAATTATAAGAACCTCTTCCTCATATACCAGCTGCAACCTCCGCTAGGTA--CG
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     26551 1465 -     28805 -cctcccacagccacTGCGGTGCACCGGTGCTCTGCACTTGCCTCACCAGCTCTGGCTTTTCTTTAACCCCTTTTCTCTCTGC-TTCTCTCCAACTGCCAGCTGAATGGGTCAGACAAGTCCATCCTGTCCTGAGAGCCCCAGGCCCCGCTTCGAAATCCAAACAATATACTTCCTCTCCTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGCGGGCGTCCTGTGACTTGACTGTGGCTCCCCAG--CCCAAAGCCAGCCCCCTTCATCTGTGACTT-AATCTGTCGTA-TGGTGAGCTGACACATCCAGGTGTGACCGTTGCTGAAAACTTGTGCCCCCTCTGTGGTATGTCCCTGCCTTGTTCTATAAATAGCTATAAATACTCatatatatatatatatatatatat--------------------atatatatGCACCTAAACATGGCTGACCACCTCACCTCTAGCACTGGGAATCAGTCACCATGCTGTCCTT-----GTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACACTGCCCCTCCAAAGTGCGCCACCTCCAGTGAGCCTCCCTGTCATGCCCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACCACCC--ACCAAGCATGGGGGTGCTGCACAGGCAGCTGTGTGGCCTGACAGTCTCTACCAGTCCTGGTGTCCCTCGGCTGAGAATCAAACCCATTTCTGGATGATGGGGAATGTGTCCTCTGCTGGCTG-TGTTCTGTGTGGATCTCAGGGAAGAGAAAAGGCCAAGCCATTTCTAGGGTGCTGTTGGGAGTGGTGAAAAGGCCACACCCTTTCCAAGGGACACTTTTCCTGGAAAGCCCCTGGAGCTTAGCTAGCTCTTATCCTGTGAAGCCGACTCTGGCCACTAGGGGGCAGGGCCATGAACTCA-TAGGGACAGACTCAACAGGCCACCAGGTGCTCCGGAGGGACAGACAGAACAGGCCACCGAGTGCAGACAGGAGAGGGAGGCAAGGGGACAGAACGGAAGACGCCTGGGGTGGATGGAAGTCAGTGTCCTTGGGTGCTGGTATCTGCCTTCCCAGGCACCACTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCTGGACTGTGCCCCATAGGCGCCATGGCAGTCCCTGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCCAGCTGGACATCT-----CACTCTGGGGC-CTTCATTCAGTGGCACAAACTCCAGGACCCAGTGAGGGAAACGGGAACCCACCAGGCTGAGCAGTATGGCTAAATCCATTTACTCCAAAAT--------------------------------GAAAAACAAAAT------AAACAGGAGTTGCATCACCAAGGCAGCCAGGACCCCATCCCCGCCTCCTTCCTCTGTCCTGTGCTATCAATAGGTAAGTTTCCCAGCCATAAATAATGATTAGAACCTCCTCCTCATACGCCAGCTCCAGCCTCCACTACGTA--TA
i nomLeu3.chr6_GL398151_2_random I 1 I 29
s rheMac3.chr7                   112821727 1442 - 170124641 CCCTCCCACAGCTGCTGCAGCATACCACTGCTTTGCGCTTGCCTCACCAGCTCTGGCTTTTCTTTAATCCGTTTTCTCTCTGCTTTCTTTCCAACTGCCCGCTGAACGGGTCAGGCAAGTCCATCCCGTCCTAAAAGCCCCAGGCCCCACTTTGACCTCTAAAC-AGATCCT--GTCTTCTCAGAGGCCTCCCTTTCCAAGCCTGCCTGTGCGGGTGTCCTGTGACTTGACAGTGGATCCCCAC-TCCCAAAG-------CCTTCATCTGTGACTT-AGTCTGTTGTAGTGGTGAGCTGACACTTCCAGCTGTGACTGTTGCTGAAAACTTGTGCCCCCTCTGTGGTATGCCCCTGCCCTGTTCTGTAAATAGCTATAAATAGTAATATACATATAT----------------------------------ACACACACACACACACGTGGCCGATCACCTTCCTTCTAGCACTAGGAATCAGTCCCCGTGCTGTCCTTTTGAAGTCTTGTGGCCAAAGAAGAGAAAGCTATCCCCCGACATCGCCCCTCCAAAGTGCGCCACCTCCAGTGAGCCTCCCTGTCATGCCCAGCCTGTGGACAGCCAACCCCCGCCATCCCTCCCACCCTCC--ACCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCGTCAGCTGAGAATCAAACCTGTTTCTGGATGACAGGGAATGTGGCCTGTGCTGGCTGTTGTTCTCTGTGCAGCTCAGGGGAGGGAAAAGGCCAAGCCATTTCTAGAATGCTGTTGGGAGCAGTGAAAAGGCCACAGCCTGTCCAAGGGACAC--TTCCTGGAAAGCCCCTGGAGCTTAGCTGACTCTTATCCTGTGAAGCTGACTCTGGCCATTAGCAGGCATGGCCATGAACTCAGCCTGGA-GGAGCCTGCGGGGTAGCCAGCACTCTGCAGGGACAGACACAACAGGCTACCAGGTGCAGACAGGAGAGGGAGGCAAGGGGACAGAAAGGAAGATGCCTGGGGTGGATGGAAGTCAGTGGCCTTGGGTGCTGGAATCTGTCTTCCCGGCTACCGCTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCTGGACTGTGCCCCATAGGCACCATGGCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGAAACAGGCCTGGAAGGTCCCCAACAGCCCAGATGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGGACAAACTGCAGGACCCAGTGAGGGAAATGGGAACACACCAGGCCGAGCAGTATGGCCAAATCCATTTATTCCAAAAT--------------------------------GAAAAGCAAAAA------AAACAGGAGTCGCATCAC--------CCACAACCCCATCCCTGCCTCCTTCCTCTGTACTATGCTAGCAATAAGTAAGTTTCCCAGCCACA---AATGCTTAGAACCTTCTCCTCATATGCCAGCTCCAACCTCCATGATACA----
i rheMac3.chr7                   C 0 I 762
s macFas5.chr7                    61606651 1442 + 171882078 CCCTCCCACAGCTGCTGCAGCATACCACTGCTTTGCGCTTGCCTCACCAGCTCTGGCTTTTCTTTAATCCGTTTTCTCTCTGCTTTCTTTCCAACTGCCCGCTGAACGGGTCAGGCAAGTCCATCCCGTCCTAAAAGCCCCAGGCCCCACTTTGACCTCTAAAC-AGATCCT--CTCTTCTCGGAGGCCTCCCTTTCCAAGCCTGCCTGTGCGGGTGTCCTGTGACTTGACAGTGGATCCCCAC-TCCCAAAG-------CCTTCATCTGTGACTT-AGTCTGTTGTAGTGGTGAGCTGACACTTCCAGCTGTGACTGTTGCTGAAAACTTGTGCCCCCTCTGTGGTATGCCCCTGCCCTGTTCTGTAAATAGCTATAAATAGTAATATacatatat----------------------------------acacacacacacacacGTGGCCGATCACCTTGCTTCTAGCACTAGGAATCAGTCCCCGTGCTGTCCTTTTGAAGTCTTGTGGCCAAAGAAGAGAAAGCTATCCCCCGACATCGCCCCTCCAAAGTGCGCCACCTCCAGTGAGCCTCCCTGTCATGCCCAGCCTGTGGACAGCCAACCCCCGCCATCCCTCCCACCCTCC--ACCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCGTCAGCTGAGAATCAAACCTGTTTCTGGATGACAGGGAATGTGGCCTGTGCTGGCTGTTGTTCTCTGTGCAGCTCAGGGGAGGGAAAAGGCCAAGCCATTTCTAGAATGCTGTTGGGAGCAGTGAAAAGGCCACAGCCTTTCCAAGGGACAC--TTCCTGGAAAGCCCCTGGAGCTTAGCTGACTCTTATCCTGTGAAGCTGACTCTGGCCATTAGCAGGCATGGCCATGAACTCAGCCTGGA-GGAGCCTGCGGGGTAGCCAGCACTCTGCAGGGACAGACACAACAGGCTACCAGGTGCAGACAGGAGAGGGAGGCAAGGGGACAGAAAGGAAGATGCCTGGGGTGGATGGAAGTCAGTGGCCTTGGGTGCTGGAATCTGTCTTCCCGGCTACCACTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCTGGACTGTGCCCCATAGGCACCATGGCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCCAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGGACAAACTGCAGGACCCAGTGAGGGAAATGGGAACACACCAGGCCGAGCAGTATGGCCAAATCCATTTATTCCAAAAT--------------------------------GAAAAGCAAAAA------AAACAGGAGTCGCATCAC--------CCACAACCCCATCCCTGCCTCCTTCCTCTGTACTATGCTAGCAATAAATAAGTTTCCCAGCCACA---AATGCTTAGAACCTTCTCCTCATATGCCAGCTCCAACCTCCATGATACA----
i macFas5.chr7                   C 0 I 23
s papAnu2.chr7                   108941125 1451 - 162156779 ccctcccacAGCTGCTGTGGGTTGCCCATGCTCTGCACTTGCCTCACCAGCTCTGGCTTTTCTTTAACCcgttttctctctgctttc-ctccAACTGCCAGCTGAATGGATCAGGCAAGTCCATCCCATCCTGAGAGCCCCAGGTCCCCCTTCAACCTCTAAAC-AGATCCT-CCTCTTCTGGGAGGCCTCCCTTTCCAAGCCTGCCTGGGCAGGTGTCCTGTGACTTGACAGTGGCTCCCCA--GCCCAAAGCCAGCCCCCTTCATCTGTGACTT-AGTCTGTTGTAGTGCTGAGCTGACACATCCAGGTGTGACCATTGCTGAAAACTTCTG-CCCCTCTGTGGTATG-CCCTGCCCTGTTCTATAAATAGCTCtaaatactcatatatatatat--------------------------------------acacatctacacGTGGCCGACCGCCTCACTTCTAGCACTGGGAATCAGTCACCGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGAAAGCTGTCCCTTGACATTGCCCTTCCAAAGAGTGCCACCTCCAGTGAGCCTCCCTGTCATGCCCGGCCTGTGGACAGCCAGCCTCCACCATCCCTCCCACCCCCC--GCCAAGCATGGGGGTGCTGTACAGGCAGCTGTGTGGGCTGACAGTCTCTACCAGTTCTGTTGTCCCTCAGCTGAGAATCAGATCCATTTCTGGATGACGGGGAATGTGTCCTCTGCTGGCTG-TGTTCTCTGTGGAGCTCA-GGGAGGGAAAAGGCCCAGCCATGTCTAGGGTGCTGTTGGGAGTGGTGAAAAGGCCACACCCTTTCTGAGGGACAC--TTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCTGGCTGTGGCCACTAG-GGGCAGGGCCATGAACTCAGCCTGGA-GGAGCCTGCGGGGCACCTGTCACTCTGGAGGGACAGACAGAACAGGCCACCCAGTGCAGATAGGCGAGAGAGGCAGGGGGGCCAAAGGGAAGATGCCTGGGGTGGATGGAAGTCAGTGTCCTTGGGTGCTGGTATCTGCCTTCCTGGCCACCGCTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCCTCACTGTGCCCCATAGGTGCCATGGCAGCCCCCATGAAATCCACCAGGTGTCACCAGACAGCATATAAGTAACAGGCCTGGAAGGTCCCCAACAGCTGAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGCACAAACTCCAGCACCCAGTGAGGGAAACAGGAACCCAGCAGGCTGAGCAGTATGGCTAAATCcatttattccaaaat--------------------------------gaaaagcaaaat------aaacaggaGTCGCATCACCAGGG-AGCCACAACCCCATCCCGACCTCCTTCCCCTGTCCTGTGCTATCAATAAATAAGTTTCCCAGCCATGAATAATGATTAGAACCTCCTCCCCATATGCCAGCTCCAACCTCCACTAGGTATG--
i papAnu2.chr7                   C 0 I 29
s chlSab2.chr29                    1334351 1411 +  24206276 CCCTCCCACAGCTGCTGCAGCATACCACTGCTTTGCACTTGCCTCACCAGCTCTGGCTTTTCTTTAATCCATTTTCTCTCTGCTTTCTTTCCAACCGCCCGCTGAACG----------------------------------GGCCCCACTTTGACCTCTAAAC-AGATCCT--CTCTTCTCAGAGGCCTCCCTTTCCAAGCCTGCCTGTGCGGGTGTCCTGTGACTTGACAGTGGATCCCCAG-TCCCAAAG-------CCTTCATCTGTGACTT-AGTCTGTTGTAGTGCTGAGCTGACATTTCCAGGTGTGACCGTTGCTGAAAACTTGTGCCCCCTCTGTGGTATGCCCCTGCCCTGTTCTATAAATAGCtataaatagtaatatacatatacac------------------------------acacacacacacacacacGTGGCCGATCACCTTGCTTCTAGCACTAGGAATCAGTCCCCGTGCTGTCCTTTTGAAGTCTTGTGGCCAAAGAAGAGAAAGCTATCCCCTGACATCGCCCCTCCAAAGTGCGCCACCTCCAGTGAGCTTCCCTGTCATGCCCAGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACCCTCT--ACCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCATCAGCTGAGAATCAAACCTGTTTCTGGATGACAGGGAATGTGGCCTGTGCTGGTTG-TGTTCTCTGTGCAGCTCAGGGGAGGGAAAAGGCCAAGCCATTTCTAGGATGCTGTTGGGAGCAGTGAAAAGGCCACAGCCTTTCCAAGGGACAC--TTCCTGGAAAGCCCCTGGAGCTTAGCTGACTCTTATCCTGTGAAGCTGACTCTGGCCATTAGCGGGCATGGCCATGAACTCAGCCTGGA-GGAGCCTGCGGGGTAGCCAGCACTCTGCAGGGACAGACACAACAGGCTACCAGGTGCAGACAGGAGAGGGAGGCAAGGGGACAGAAAGGAAGATGCCTGGGGTGGATGGAAGTCAGTGGCCTTGGGTGCTGGAATCTGTCTTCCCGGCTACTGCTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCCGGACTGTGCCCCATAGGCACCATGGCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCCAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGGACAAACTGCAGGACCCAGTGAGGGAAACGGGAACACACCAGGCCGAGCAGTATGGCCAAATCCATTTATTCCAAAAT--------------------------------GAAAAGCAAAAA------AAACAGGAGTCGCATCAC--------CCACAACCCCATCCCTGCCTCCTTCCTCTGTACTATGCTAGCAATAAATAAGTTTCCCAGCCACA---AATGCTTAGAACCTTCTCCTCATATGCCAGCTCCAACCTCCATGATACA----
i chlSab2.chr29                  C 0 I 23
e ponAbe2.chr15                   17468957    0 -  99152023 C

a score=857333.000000
s hg38.chr15_KI270850v1_alt          49277 595 +    430880 ATACAGAATGTTACACAGCTACAGTATGTACACGGGGGAAGGGGGGCCACCCCCAGCAGCCTGTGCCCTGGCCTGGTCTACAGTTAACTCCACTGTCCCGCCTCAGCTGCCTCTCTGAGTAAGAAGATGGGAG-CCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGAAGGCCGTCAGACCTCCTCCAAACAAACCAACTCCACCAACCTCTGGCTCTTAAATAACAAACATCATCATCCAGAAATGTAAGGACTCAGCCTTGGTCAAGGTGGTAAAGGGTCTGTTTGTCT--CCCTCCATTAGACAGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGCTGACTGGGGAGGGGTTGTAGGGACATGGT-GGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGACAGGGGCCTGCTTTTATTTATTTTTATTTTTATCCCATGAC-TTTTTTTAAATCCTGTAACTAATTTTTCATAAC-TTTTTAAAATAACTTTTCATAAAAC---TTTTTTTTTACTTTTTTTCCACAACTTTTTTTTGCC---ACTTTTCCACAGTATTTTTTTATCCTGTAACTTTTTCATCCCACAACT
s panTro4.chr15_GL392289_random      51949 595 -    187897 ATACAGAATGTTACACAGCTACAGTATGTACACGGGGGAAGGGGGG-CACCCCCAGCAGCCTGTGCCCTGGCCTGGTCTACAGTTAACTCCACTGTCCCGCCTCAGCTGCCTCTCTGAGTAAGAAGATGGGAG-CCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGGAGGCCGTCAGACCTCCTCCAAACAAACCAACTCCACCAACCTCTGGCTTTTAAAT----AACATCATCATCCAGAAATGTAAGGACTCAGCCTTGGTCAAGGTGGTAAAGGGTCTGTTTGTCT--CCCTCCATTAGACAAGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGCTGACTGGGGAGGGGTTGCAGGGACATGGT-GGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGACAGGGGCCTGCttttatttatttttatttttatCCCATGATGTTTTTTTAAATCCCGTAACTTCTTTTTCAGAAC-TTTTAAAAAAAACTTTTCATAAAACTTTTTTTTTTTTACTTTTTTCCCACAAC-TTTTTTTGCCACAACTCTTCCACAGTA-TTTTTTATCCCGTAACTTTTTCATCCCACAACT
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     28045 577 -     28805 ATACAAAATGTTACACAAATACTATATGTACACTGGGGAACGGGGG-CCACCCCAGCAGCCCGAGCCCTCACCTGCTCTACAGTTAGCCCCACTGTCCTGCCTCGGCTGCCTCTCTGAAT---AAGATGGGAG--ACCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGGCCTCTTCCAAACAAACCAACTCCACCAGCCTCTGGCTCTTCAATAACAAACATCATTATCCAGAAATGTAAGGACTCAGCCCTGGTC-AGGTGGCAAAGGGTCTGTTTGTCT--CCCTCCATTAGACAGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGAAAGGGGTGGTTGGTACATGGT-GGGAGCGAAGACTCCGGTCCCACTTCTCCAGGCTTATGCTGACAGAGGCCTG----------GTTTTATTTTTATCACATGAC-TTAAAAAAAATCCCATAACTTCCTTGTCATAAC-TTTTTAAAAT-ACTTTTCATAAAAC----ATTTTTCTACTTTTTTT-CACAAC-TTCTTTTGCCACAGCTTTTCCACAGCA-TTTTTTATCCCATAACTTTTTCATCCCACAACT
i nomLeu3.chr6_GL398151_2_random I 29 C 0
s rheMac3.chr7                   112823931 565 - 170124641 ATACAAAATGTTACACAGATACTATATGTACACTGGGGAAGGGGGG-TCACCCCAGCAGCCCGTGCCCTCGCCTGCTCTACAGTTAGCCCCACTGTCCCGCCTCAGCTGCCTCTCTGAATAAGAAGATGCGAG-GCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGTCATCAGGCCTTCTCCAA---------CTCCATCAGCCTCTGGCTCTTCAATAACAAACATCATCGTCCAGGAATGTAAGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTGGTTGTCTGCCCCCCCATTAGACAGGGATCTTGTCTTGCTACCTTAATGGTAAAGGGGTGACTGGGAAGGGGTGATAGGGACACGGT-GGGGGTGAAGACTCCAGCCCCACTTCTCCAGGCTTATGCTGACAGGGGCTTGCttttatttatttttatttttatCCCATGACTTTTTAAAAAATCTCATAACTTCTT----ATAAC-TTAAAAAAAA-ACTTTTCATAAAAC-----TTTTTCTACTTTTTTG------------------GCCGCTTTTCCACAGCA-TTTTTTATCCCATAACTGTTTCATCCCACAACT
i rheMac3.chr7                   I 762 I 21
s macFas5.chr7                    61608116 579 + 171882078 ATACAAAATGTTACACAGATACTGTATGTACACTGGGGAAGGGGGG-CCACCCCAGCAGCCTGTGCCCTTGCCTGGTCCACAGTTAGCCCCATTGTCCTGCCTCAGCTGCCTCTGTGAAT---AAGATGGGAGCCCCCCCTGAGGGAAAAGTTCCTTTGGTGAGAGTAGAGAGGCCATCAGACCACCTCCAAACAAACCAGCTCCACCAGCCTCTGGCTCCTAAATAACAAACATCACCATCCAGAAATGTAAGGACTCAGCCCTGGTCAGCGTGGGAAAGGGTCTGTTTGTCT--CCCTCCATTAGACAGGGGTCTTGTCTTGCTACCCTAATGTTAAAGGGGTAACTGGGAAGGGTTGGTTGGTACATGGT-GGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGATAGGGGCCTGCTTTTATTTATTTTTATTTTTATCCCATGATGTTTTTTGAAATTCCATAACTTGTTTTTCATAAC-TTTTAAAAAA-AAATTTCATACAAC----TTTTTTCTACTTTTTTT-------------TTGCCACAACTTCTCCACAGCA-TTTTTTATCTCATAACT-TTTTACCGCACAGTT
i macFas5.chr7                   I 23 I 3
s papAnu2.chr7                   108942605 572 - 162156779 ATACAAAATGTTACACAGATACTATATGTACACTGGGGAAGGGGGG-TCACCCCAGCAGCCCGTGCCCTCGCCTGCTCTACAGTTAGCCCCACtgtcccacctcagctgcctctCTGAATAAGAAGATGCGAG-GCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGTCATCAGGCCTCCTCCAAACAAACCAGCTCCACCAGCCTCTGGCTCTTCAATAACAAACATCACCGTCCAGAAATTTAAGGACTCGGCCCTGGTCAAGATGGCAAAGGGTCTGTTTGTCT--CCCTCCATTAGAC-GGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAGGGGTGGTTGGTACATGGTGGGGGGCGAAGACTCTAGCCCCACTTCTCCAGGCTTATGCTGACAGGggcttgcttttatttatttttatttttatcccatgacttttaaaaaaatctcataacttctt----ataac-ttaaaaaaaa-acttttcataaaac-----tttttctacttttttg------------------gccgcttttccacagca-ttttttATCCCATAACTGTTTCATCCCACAACT
i papAnu2.chr7                   I 29 I 4
s chlSab2.chr29                    1335785 577 +  24206276 ATACAAAATGTTACACAGATACTGTATGTACACTGGGGAAGGGGGG-CCACCCCAGCAGCCTGTGCCCTCACCTAGTCCACAGTTAGCCCCATTGTCCTGCCTCAGCTGCCTCTGTGAAT---AAGATGGGAG-CCCCCCTGAGGGAAAAGTTCCTTTGGTGAGAGTAGAGAGGCCATCAGACCACCTCCAAACAAACCAGCTCCACCAGCCTCT-GCTCCTAAATAACAAACATCACCATCCAGAAATGTAAGGACTCAGCCCTGGTCAGCATGGGAAAGGGTCTGTTTGTCT--CCCTCCATTAGACAGGGGTCTTGTTTTGCTACCCTAATGTTAAAGGGGTAACTGGGAAGGGTTGGTTGGTACATGGT-CGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGATAGGGGCCTGCTTTTATTTGTTTTTAATTTTATCCCATGATGTTTTTTGAAATTCCGTAACTTGTTTTTCATAACTTTTTTAAAAA-AATTTTCATACAAC----TTTTTTCTACTTTTTTT--------------TGCCACAACTTCTCCACAGCA-TTTTTTATCTCATAACT-TTTTACCGCACAATC
i chlSab2.chr29                  I 23 I 3
e ponAbe2.chr15                   17468957   0 -  99152023 C

a score=12561.000000
s hg38.chr15_KI270850v1_alt          49872 16 +    430880 TT----AATTCCTGTTAACT
s panTro4.chr15_GL392289_random      52544 15 -    187897 TT----AATTCCTG-TGACT
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     28622 19 -     28805 TTTTTAAATTCCCA-TAACT
i nomLeu3.chr6_GL398151_2_random C 0 I 2
s macFas5.chr7                    61608698 15 + 171882078 TT----AATTCCCA-TAACT
i macFas5.chr7                   I 3 I 2
s papAnu2.chr7                   108943181 15 - 162156779 TA----AATTCCCA-TAACT
i papAnu2.chr7                   I 4 I 2
s chlSab2.chr29                    1336365 15 +  24206276 TT----AATTCCCA-TAACT
i chlSab2.chr29                  I 3 I 5
e rheMac3.chr7                   112824496 21 - 170124641 I
e ponAbe2.chr15                   17468957  0 -  99152023 C

a score=121730.000000
s hg38.chr15_KI270850v1_alt          49888 73 +    430880 TTTTTAGTTTGTGTTCTTTTAATAAACACACTTACATAGTTACAATTTTGTAAGAATAAAAACCGATTACCTC
s panTro4.chr15_GL392289_random      52559 73 -    187897 TTTTTAGTTTGTGTTCTTTTAATAAACACACTTACATGGTTACAATTTTGTAAGAATAAAAACCGATTATCTC
i panTro4.chr15_GL392289_random  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     28643 72 -     28805 TTTTTAGTTTATGTTCCTTTAATAAACACACTTGCATAGTTACAATTTTGTAAAAAT-AAAACCGATTATCTC
i nomLeu3.chr6_GL398151_2_random I 2 n 2
s rheMac3.chr7                   112824517 73 - 170124641 TTTTTAGTTTCTGTTCTTCTAATAAACACACTTGCATAGTTACAATTTTGTAAAAATAAAATCCGATGATCTC
i rheMac3.chr7                   I 21 C 0
s macFas5.chr7                    61608715 73 + 171882078 TTTTCAGTTTGTGTTCTTTTAATAAATACACTTGCATAGTTACAATTTTGTAAAAATAAAAACCGATGATCTC
i macFas5.chr7                   I 2 C 0
s papAnu2.chr7                   108943198 73 - 162156779 tttttagtttctgttcttttaataAACACATTTGCATAGTTacaattttgtaaaaacaaaagccGATTATCTC
i papAnu2.chr7                   I 2 C 0
s chlSab2.chr29                    1336385 73 +  24206276 ATTTCAGTTTGTGTTCTTTTAATAAATACACTTGCATAGTTACAATTTTGTAAAAATAAAAACCGATGATCTC
i chlSab2.chr29                  I 5 C 0
e ponAbe2.chr15                   17468957  0 -  99152023 C

a score=138699.000000
s hg38.chr15_KI270850v1_alt          49961 133 +    430880 ATGCCAAGCATGCCGAGAATTTGCAGAGTCTCAATACC--CAATACTATAGTTTTCAAGACACACAAAATTTTTAGGC-AAAACAGCACCTTGAAACAATTTAATAATGTATTACATTACAGTAGCatcacagcag
s panTro4.chr15_GL392289_random      52632 133 -    187897 ATGCCAAGCATGCCCAGCATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTGAAG--ACACAAAATTTTTAGGC-AAAACAGCACCTTGAAACAATCTAATAATTTATTACATTGCAGTAGCATCACAGAAG
i panTro4.chr15_GL392289_random  C 0 C 0
s rheMac3.chr7                   112824590 135 - 170124641 ATGCCAAGCGTGCCCAGCATTTGCACAGTCTCAATACATTTAATACCATAGTTTTGAAGACACACAAAA-TTTACGGCAAAAACAGCACTTTGCAACAATTTCCTAATTTATTACATTACAGTAGCATCACAGTAG
i rheMac3.chr7                   C 0 C 0
s macFas5.chr7                    61608788 135 + 171882078 ACGCCAAGTGTGCTCAGCATTTGCACAGTCTCAATACCTTTAATGCTATAGTTTTCAAGACACACAAAATTTTAAGGCAAAAACAACACTTTGCAACAATTTCATAATTTATTACATTACAGTA-tatcatgatag
i macFas5.chr7                   C 0 C 0
s papAnu2.chr7                   108943271 135 - 162156779 ATGCCAAGCGTGCCCAGCATTTGCACAGTCTCAATATATTTAATACCATAGTTTTGAAGACACACAAAA-TTTACGGCAAAAACAGCACTTTGCAACAATTTCCTAATTTATTACATTACAGTAGCATCACAGTAG
i papAnu2.chr7                   C 0 C 0
s chlSab2.chr29                    1336458 135 +  24206276 ATGCCAAGTGTGCTCAGCATTTGCACAGTCTCAATACTTTTAATGCTATGGTTTTCAAGATACACAAAATTTTAAGGCAAAAACAACACTTTGCAACAATTTCATAATTTATTACATTACAGTA-tatcatgatag
i chlSab2.chr29                  C 0 C 0
e nomLeu3.chr6_GL398151_2_random     28715   2 -     28805 I
e ponAbe2.chr15                   17468957   0 -  99152023 C

a score=1126346.000000
s hg38.chr15_KI270850v1_alt         50094 704 +    430880 cagtcaataatgccactttagacaaaaa----tcagtatttccattatgcattctgtgtataagaattcataaatcgg-taaaagtcattctaagaaaacttggcaaatacagctttggactggaattggcatttctttGTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAACTACAGTATTCATATTTTAAAATGTTTTAAATTATTTTAAGACGTTAATATAGCAGTTACATTTTTGAATAGTT-----ATTTGAAAGTGA--CTGTAAGATAAAGTTTTAGAGAATCTATTATGGATAGGGTTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA---TTGTTTTTCATTTTGGGAAAACCTACCAGGTTTAATCAATTACTTTAAAAATAATTATCATATTTTGCAGTCTTTAAATAGGTGTTTTGATTCTTTACTCCCTACAGAAATT--CAAATTTATTCAGTTGAAGTCACATTTTAAAATTCTATGTTCCTGCTGAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTAAAGGCTGCCTTATACTGAATGAGGTAGAGAACAAATACTTGGCTGAATGAGGTACTGCAAAAGACTGCATGCACTTTGAAGAAAGACTTGAGTTATTGTCATAGGATTTCCATTCTCTTTAGCTTTTTCTTAAACATATGACAAAATACCTACACAAAGAG
s panTro4.chr15_GL392289_random     52765 703 -    187897 CAGTCAATAATGCCACTTTAGACAAAAA----TCAGTATTTCCATCATGCATTCTGTGTATAAGAATTCATAAATCGG-TAAAAGTCATTCTAAGAAAACTTGGCAAATACAGC-TTGGACTGGAATTGGCATTTCTTTCTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAGCTACAGTATTCGtattttaaaatgttttaaattattttaaGACATTAATATAGCAGTTACATTTTTGAATAGTT-----ATTTGAAAGTGA--CTGTAAGATAAAGTTTTAGAGAATCTATTTTGGATAGGGTTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA---TTGCTTTTCATTTCAGGAAAACCTATCAGGTTTAATCTATTACTTTAAAAATAATTATCATATATTGCAGTCTTTAAATAGGTATTTTGATTCTTTACTTCCCACAGAAATT--CAAATTTATTCAGTTGAACTCACATTTTAAAATTCTATCTTTCTGCTGAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTACTGCAAGAGACTGCGTGCACTTTGAAGAAAGACTTGAGTTATTGTCATAGGATTTCCATCCTCTTTAGCTTTTTCTTAAACATATGACAAAATACCTACACAGAGAG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22725065 699 - 121039945 CAGTCAATAATGCCACTTTAGGCAACAGTGTTTCAGTATTTCCATTATACATTCTGTTTATAAGAATTCATAAGTTGG-TAAAAGTCATTCTAAGAAAACTTGGCAAATAAAGGTTTGGACTGGAATTGGCATCTC----TCTACTTTTCCTTC----AGTTTCTTTGTTTAAAACTACAGTATTCATATTTTGAAATGTTTTAACTTATTTCAAAACATTAATATAGCAGTAACATTTTTGAATAGTT-----ATTTTAAAGTGA--CTGTAAGATAAAGTTTTAGAGAAAGTATTATGGATAGGGCTGAGTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA---TT-TTTTTCATTTCTGGAAAACCTATCAGGTTTAATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATT--CAACTTTATTCCGTTGAACTCACATTTTAAAATTCTATATTTCTGATGAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAAGGACCGCATGAGCTTTGAAGAAAGACTTAAGTTATTGTCACAGGATTTCCATTCTTTGTAGCTTTTTCTGAAACACAGGACAAAATACCTACACAAAGGG
i nomLeu3.chr6                  I 9922 C 0
s rheMac3.chr7                  112824725 715 - 170124641 CAGTCAATAATTCCAGTTTACACAAAAGTTTTTCAGTATTTCCATTATACATTCTGTTGACAGGAATTCATAAATTGG-TAAAAGTCATTCTAAGAAAATTCGGCAAATAAAGCTTGGCATTGGAATTGGCATTTCTTTCTCTACTTTTCCTTCCCCCAGGTTCTTTGCTTTAAACTACAGTATTCATATTTTAAGATGTTTTAACTTATTTTAAAACATTAACATAGCAGTTACATTTTTGAATAGTTATATCATCTTAAAGTGACTCTGTAAGATAAAGTTTTAGAGAAAATATTACGGATAGGGCTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTAGTTTTTGAACTGA-TTTT-TTTTTCATTTCTGGAAATCCTATCAGGTTTAATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCGATAATTTATTCAGTTGAACTCACATTTTCAAATTTTATATTTCTGATGATCTCTAACCTTCTAGTGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACCGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGC-AAAGACTGCATG--CTTTGAAGAAACACTTAAGTTATTGTCATAGGATTTCCATTCTTTTTAGCTTTTTCTGAAACATAGGACAAAATCCCTACACAAAGAG
i rheMac3.chr7                  C 0 I 1014
s macFas5.chr7                   61608923 703 + 171882078 cagtcaataatgccactttagacaaaagtctttcagtatttccattatacattctgttaataagaattcataaattgg-taaaagtcattctaagaaaacttggcaaataaagct-----------ttggACTTTATTTCTCTACTTTTCCTTCCCCCAGTTTCTTTGTTTTAAACTACAGTATTCATATTTTAAAATGTTTTAACTTATTTCAAAACATTAACATAGCAGTTACATTTTTGAATAGTTATATTATTTTAAAGTAACTCTGTAAGATAAAGTTTTGGAGAAACTATTATGGATAGGGCTGATTTATATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA---TT-TTATTCATTTCCAGAAAATCTATCAGGTTTAGCCAGATACTTTAAAAATAATTATCATATATTGCAATCTTTTAACAGGTATTTTGATTCTTTATTTCCTACAGAAATT--AAAATTTATTCAGTTGAACTCACATTTTAAAATTATGTATTTCTGATGAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAACTGAAAGCTGCCTTATACTGAATGAAGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAAAGACTGCATGCACTTTGAAGAAAGACTTAAGTTATTGTGATATGATTTCCATTCTTTTTAGCTTTGTCTTAAACATATGACAAAATACCTACACAAAGAG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108943406 709 - 162156779 CAGTCAATAATTCCAGTTTACACAAAAGTTTTTCAGTATTTCCATTATACATTCTGTTGACAGGAATTCATAAATTGG-TAAAAGTCATTCTAAGAAAACTCAGCAAATAAAGCTTGGCATTGGAATTGgcatttctttctctacttttccttCCCCCAGGTTCTTTGCTTTAAACTACAGTATTcatattttaagatgttttaacttattttaaaacattaacataGCAGTTACATTTTTGAATAGTTATATCATCTTAAAGTGACTCTGTAAGATAAAGTTTTAGAGAAAATATTACGGATAGGACTGatttacattttcacattttctaaaaatcagcTTTAGTtttagaactgattttt-tttttcatttctggaaagCCTATCAGGTTTAatcagatactttaaaaataatgaccatATATTGCAATCTTTAAATAGGTATTTTGATTC-----TTCtaacagaaatt--caaatttattcaGTTGAActcacattttcaaattttatatttctgatgATCTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTGGAAGCTGCCTTATACCGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGC-AAAGACTGCATG--CTTTGAAGAAACACTTAAGTTATTGTCATaggatttccattctttttagatttttctgaAACATAGGACAAAATCCCTACACAAAGAG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1336593 703 +  24206276 cagtcaataatgccactttagacaaaagtctttcagtgtttccattatacattctgttaataagaattcataaattggttaaaagtcattctaagaaaacttggcaaataaagct-----------ttggACTTTATTTCTCTACTTTTTCTTCCCCCAGTTTCTTTGTTTTAAACTACAGTATTCATATTTTAAAATGTTTTAACTTATTTCAAAACATTAACATAGCAGTTACATTTTTGAATAGTTATATTATTTTAAAGTAACTCTGTAAGATAAAGTTTTGGAGAAACTATTATGGATAGGGCTGATTTATATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA---TT-TTATTCATTTTCAGAAAATCTATCAAGTTCAGCCAGATACTTTAAAAATAATTATCATATATTGCAATCTTTTAACAGGTATTTTGATTCTTTACTTCCTACAGAAATT--AAAATTTATTCAGTTGAACTCACATTTTAAAATTCTGTATTTCTGATGAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAAGAAGAGAACAAATACTT-GCTGAATGAGGTATTGCAAAAGACTGCATGCACTTTGAAGAAAGACTTAAGTTATTGTGACATGATTTCTACTCTTTTTAGCTTTGTCTTAAACATATGACAAAATACCTACACAAAGAG
i chlSab2.chr29                 C 0 C 0
e ponAbe2.chr15                  17468957   0 -  99152023 C

a score=10509.000000
s hg38.chr15_KI270850v1_alt         50798 11 +    430880 TCGTATTTGAA
s panTro4.chr15_GL392289_random     53468 11 -    187897 TGGTATTTGAG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22725764 11 - 121039945 TGGTATTTCAG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   61609626 11 + 171882078 TGGTATTTCAG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108944115 11 - 162156779 TGGTATTTAGA
i papAnu2.chr7                  C 0 I 443
s chlSab2.chr29                   1337296 11 +  24206276 TGGTATTTCAG
i chlSab2.chr29                 C 0 C 0
e rheMac3.chr7                  112825440 1014 - 170124641 I
e ponAbe2.chr15                  17468957  0 -  99152023 C

a score=305309.000000
s hg38.chr15_KI270850v1_alt         50809 367 +    430880 TTAATATAGTATATTTATTTTTCAGACTGACATTCATCTTAAATATGCCAGTATGTGATTTAATCCACAGGTACCTGATGAACACATTATTGTCAGATTGGTTACAGTTGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATACGTGTCAGGGTAAAAGTGAAGCGATTTGAACTATAAAAATACCTTTGAAATAATTTATCAATGTATTAGATAAGCTCAGTTTCAGAATGATAAACAAAAACTGTTAGACCAAATAACTTGGCTAATTAACAGTGGTACGATTTCTAGCCCGAGGGTTTAAAATGGAGTTAAAGTAAGTGTCTTTAAACTGAACTCAAAGAATGCAAAAGCGGCAAGTTCA
s panTro4.chr15_GL392289_random     53479 367 -    187897 TTAATATAGTACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCACAGGTGCCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATACGTGTCAGGGTAAAAGTGAAGTGATTTGAACTATAAAAATACCTTTGAAATAATTTATCAATGTATTAGATAAACTCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAATAATGTGGCTAATTAACAGTGGTACGATTTCTAGCCTGAGGGTTCAAAATGGACTTAAAGTAACTGTCTTTAAACTGAACTCAAAGAATGCAAAAGCAGCAAGTTCA
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22725775 367 - 121039945 TTAACATAGTACATTTATTTTCCAGATTGACATCCAGCTTAAATATGCCAGTGCGTGATTTAATCCATAGGTACCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATCTTTATCAGGGTAAAAGTGAAGTGATTTGAACTATAAAAATTCCTTTGAAATAATTTATGAATGTATTAGGTAAACCCAGTTTCAGAATTATAAAGAAAAATTGTTAGACCAAATAAGGTGGCTCATTAACAGTGGTACAATTTCTAGCCCAAGGGTTTAAAATGGACTTAAAGTAACTGTCTTTCAAGTGAACTCAAATAATGCAAAAGTGGCAAGTTCA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   61609637 367 + 171882078 TTAATATAGTACATTTATTTTCCAGGCTGATATTCAGCTTAAATATGCCAGTATGTGATTTAATCCATAGGTCCCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAATGCGATCTGAAGGTCATTCCTAGTCATTTATATGTGTCAGGGTAAAAGTGAAGTGACTGGAACTATAAAAATTCCTTCAAAATAATTTATCAATGTATTAGGTAAACCCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAATAATGTGGCTAATTAACACTGGTACGATTTCTAGCCCGAGGGTTTTAAATGGACTTAAAGTAACTGTCTTTCAAGTGAACTCAAATAATGCAAAAGCGGCAAGTTCA
i macFas5.chr7                  C 0 I 5
s chlSab2.chr29                   1337307 367 +  24206276 TTAATATAGTGCATTTATTTTCCAGGCTGATATTCAGCTTAAATATGCCAATATGTGATTTAATCCATAGGTCCCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAATGCGATCTGAAGGTCATTCCTAGTCATTTATATGTGTCAGGGTAAAAGTGAAGTGACTGGAACTATAAAAATTCCTTCAAAATAATTTATCAATGTATTAGGTAAACCCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAATAATGTGGCTAATTAACAGTGGTACGATTTCTAGCCCGAGGGTTTAAAATGGATTTAAAGTAACTGTCTTTCAAGTGAACTCAAATAATGCAAAAGCGGCAAGTTCA
i chlSab2.chr29                 C 0 I 515
e papAnu2.chr7                  108944126 443 - 162156779 I
e rheMac3.chr7                  112825440 1014 - 170124641 I
e ponAbe2.chr15                  17468957   0 -  99152023 C

a score=15173.000000
s hg38.chr15_KI270850v1_alt         51176 35 +    430880 G-----ACAAGGCAAGAACAGGACCTTTAGTCCATTTTAA
s panTro4.chr15_GL392289_random     53846 40 -    187897 GAAAATAAAAGGCAAGAACAGGACCTTAAGTCCATTTTAA
i panTro4.chr15_GL392289_random C 0 I 464
s nomLeu3.chr6                   22726142 40 - 121039945 CAAAATAGAAGGCAAGAACAGGACCTTAAGTCCATTTTAA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   61610009 35 + 171882078 -----TAGAAGGTAAGAACAGGACCTCAAGTCTATTTTAA
i macFas5.chr7                  I 5 C 0
e chlSab2.chr29                   1337674 515 +  24206276 I
e papAnu2.chr7                  108944126 443 - 162156779 I
e rheMac3.chr7                  112825440 1014 - 170124641 I
e ponAbe2.chr15                  17468957  0 -  99152023 C

a score=329.000000
s hg38.chr15_KI270850v1_alt         51211 2 +    430880 GC
s nomLeu3.chr6                   22726182 2 - 121039945 AC
i nomLeu3.chr6                  C 0 I 463
s macFas5.chr7                   61610044 2 + 171882078 AC
i macFas5.chr7                  C 0 I 473
e chlSab2.chr29                   1337674 515 +  24206276 I
e papAnu2.chr7                  108944126 443 - 162156779 I
e rheMac3.chr7                  112825440 1014 - 170124641 I
e ponAbe2.chr15                  17468957 0 -  99152023 C
e panTro4.chr15_GL392289_random     53886 464 -    187897 I

a score=632209.000000
s hg38.chr15_KI270850v1_alt         51213 544 +    430880 CATAAATATTACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGTATAGACAC-TTTCCTCATGACACTTTGACAGTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTACGTTGCATAAACTGCTCCTTGATTTTCAAATGTAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACT-AAGTACTCTCACATATATTAGTTTATAATAATGTTTGTTA---TTATTTTTAAAGTGTTCTCCATTCAAGGAAAAGAAGTAAATTCCTATGTCAGA----------TGGTTGAAGACTAGCTATTAGCCAGAGAGGTCTAGATGGTAAAATCC-ATCTTCTAGCCTCAAATAAGCTCCATGAACACAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTATATGCCTGTTCCAGGGGCATTTAAACTCTTAAAGGATTTCTTCTGATCTTTACTAAATACAT
s panTro4.chr15_GL392289_random     54350 538 -    187897 CATAAATATTACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCGTAAAGAACTTTGTGAGGAAATATAACTCCGTGATTGTATAGACAC-TTTCCTCATGACACTTTGACATTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTAAGTTGCATAAACTGCTCCTTGATTTTCAAATGTAGTATAATACTGTCTACTAAAATTCCTTTTTGTTTCAACTTAAGTACTCTCACATATATTAGTTTATAATAATGTTTGTTA---TTATTTTTAAAGTCTTTTCCATTCAAGAAAAAGAA-----TGCCTATGTCAGA----------TGGTTGAAGACTAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCC-ATCTTCTAGCTTCAAGTAAGCTCCATGAACATAGAGGAATGCCAGGTGTCACGCAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTAT--GCCTGTTCCAGGGACATTTAAACTCTTAAAGGATTTCTTCTGATCTTTACTAAATACAT
i panTro4.chr15_GL392289_random I 464 C 0
s nomLeu3.chr6                   22726647 547 - 121039945 CATAAATATGGCACAAAATATGTCTCTAACTGAAACCGAGAGGTATAAAAATGTATTTCA--CTTTGTGAAGAACTCTGTGAGGAAATATAACT--GTGATTGTTTAGACACTTTTCCTCATAATACTTTGACTTTCACAAACAGTAGATTGCACTGCGGCTTGTAAACATTTTAAGTTGCATAAACTTCACCTTGATTTTCGTATGTAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACT-AAGTACTGTCACATATGTTGGTTTATAATAATG---GTTA---TTATTTTTAAAGTGTTTTCCATTCAAAGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAATGTGGTTGAAGAATAGGTATTAGCCAGAGAGGTCTAGATGGTAAAAACCAATCTTCTAGCCTCAAAGAAGCTCCATGAACATAGAGGAAGGCCAAGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGACTGTAT--GCCTCTTCCAGGGACATTTAAGCTCTTAAAGGATTTCTTAGGATCTTTACTAAATACCT
i nomLeu3.chr6                  I 463 C 0
s macFas5.chr7                   61610519 550 + 171882078 CATAAGTATGACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAGAACATATTTCACTCTTCATAAAGAACTTTGTGAGGAAATATAACTCTGTAATTGTATAGATACTTTTCCTCAAAATACTCTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTGCATAAACATCTCCTTGATTTTCAAATGTAGTAGAATACTGTCTACTAAAACTTCTTTTTGTTTCAACT-AAGTACTCTCACATATATTGGTTTATAATAATG---GTTG---TTATTTTTTAAGTGTTTTCCATTCAAGGAAAAGAAGTAAATTCCTATGTGAGAGTAACCTATGTGGTTGAAGAAAAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCA-ATATTCTAGTCTCAAAAAAGCTCCATGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTAGAATTAATTCTTGACTAAAGCCTGTAT--GCCTGTTCCAGGGACATTAAAACTCTGAAAGGATTTCTTATGATCTTTACTAATTACAT
i macFas5.chr7                  I 473 C 0
s papAnu2.chr7                  108944569 552 - 162156779 CATAAATACGGCACAAAATATGCCTCTAACTGAAACCGAGAggtataaaaacatatttcaccCTTCGTAAAGAACTTTGTGAGGaaatataactctgtgattgTATAGATACCTTTACTCATAATACTTTGACATTCACAAACAGTAGATTGCATtgcagtttgtaaatattttaagttgcaTAAACTTCTCCTTGATTTTCAAATGTAGTATAACACTGTCCACTaaaactgctttttgtttcaaCC-AA-TACTCTCAAATGTATTAGTTTATTAAAatg---gttgttattatttttaaagtgttttccattcaaggaaaagaagtaaaTTCCTATATCAGATTAACCAATGTGGCTGAAAAATAGGTATTAGCAAGAGAGGTCTAGATGGTAAAATCA-GTCTTCTAGCCTCAAAGAAGCTCCGTGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTCTAT--GCCTGTTCCAGGGACATTTAAACTCTGAAAGGGTTTCTTATGATCTTCACTAAATACAT
i papAnu2.chr7                  I 443 C 0
s chlSab2.chr29                   1338189 550 +  24206276 CATAAGTATGACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCATAAAGAACTTTGTGAGGAAATATAACTCTGTAATTGTATAGACACTTTTCCTCAAAATACTCTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTGCATAAACATCTCCTTGATTTTCAAATGTAGTAGAATACTGTCTACTAAAACTTCTTTTTGCTTCAACT-AAGTACTCTCACATATATTGGTTTATAATAATG---GTTG---TTATTTTTTAAGTGTTTTCCATTCAAGGAAAAGAAGTAAATTCCTATGTGAGAGTAACCTATGTGGTTGAAGAAAAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCA-ATATTCTAGCCTCAAAAAAGCTCCATGAACATAGAGGAATGCCAGGTGTCGCACAGCTTTCCTTCACTAGAATTCATTCTTGACTAAAGCCTGTAT--GCCTGTTCCAGGGACATTTAAACTCTGAAAGGATTTCTTATGATCTTTACTAATTACAT
i chlSab2.chr29                 I 515 C 0
e rheMac3.chr7                  112825440 1014 - 170124641 I
e ponAbe2.chr15                  17468957   0 -  99152023 C

a score=1251565.000000
s hg38.chr15_KI270850v1_alt         51757 768 +    430880 TAAGGAGAACGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGGAACATGAACTCTGACTTTAAAATGTATTGTAGATATAAATGCTCTCAGCTAGAAAAGGTTTTCCACATCCACAGTC-ATGATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTCAGGTCATCAAAAAAGAGTACAACTGCCACAGCTCATGAGGCAGTATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGAACTACCGTAGTACAGCGCTCATTCTTGGCACCGGAACAAATGAAACATATTCTATCCTGCACACACCTGCCAAAGCAGGCCACTTTCCTCTTCTGGGAGATTTAAAAACCTCCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAAAGGGGGAAAGGCTGTTTCCAGTGCTCCACCTTTAAACAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--CGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAACAGCAGAACATAAGGAAATTTTATCTGAATTCCGTAATGAATATACAGGCTGTACTAACA-TTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAAGAACAGTTGTGTGCATACAGTGGGTCTTTGTGTGTTTGAACTCCCACCACATAAGGGCAAACTCGATATGCATGCTAACGTCCTATAATTATCAAATTAAAAA
s panTro4.chr15_GL392289_random     54888 768 -    187897 TAAGGAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGGAACACGAACTCTGACTTTAAAATGTATTGTAGATATAAATGCTCTCAGCTAGAAAAGGTTTTCCACATCCACAGTC-ATGATGGGAGCCTTTCATTCCTCAGAAATAATCCCCTTTTAGGTCATCAAAAAAGAGTACAACTGCCACAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATGCAAATCCTAAGGGAACTACCGTAGTACAGTGCTCATTCTTGGCACCAGAACAAATGAAACATATTCTATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGGGAGATTTAAAAAGCTCCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAAAGGGGGAAAGGCTGTTTCCAGCGCTCCACCTTTAAACAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--CGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAACAGCAGAACATAAGGAAATTTTATTTGAATTCCATAATGAATATACAGGCTGTACTAACA-TTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAAGAACAGTTGTGTGCATACAGTGGGTCTTTGTGTGTTTGAACTCCCATCACATAAGGGCAAACTCGATATGCATGCTAGCGTCCTATAATTATCAAATTTAAAA
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22727194 766 - 121039945 TAAGAAGAATGACAACCAGTGCTCTTTTGTGTACTGGGACATATATTCATGTGACTAAAACAGGTAACATGAACTCTGACTTTAAAA-----TGTAGATATAAATGCTCTAAGCTAGAAAAGGTTTTCCACATCCACAGTCAATGATGGGAGCCTTTCATTCCTCAGAAATCATCCCTTTTTAGGTCATCAAGAAAGGGTACAACCGCTGCAGCTCGTGATGCAATATCTTCATGAGCCCAGAGCCCATACAAATCCTAAGGGAGCCACCATAGTACAGCGCTCATTCTTGGCACCAGAACACATGAAACACACTCTATCCTACGCACACCTGCCAGAGCAGGCCACTTTCCTCTTCCGTGAGATTTAAAAAGCTCCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAATAGGAGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTCTAAAGGTCAGTACTCACAGTGGCATATTACAAAGTAATAAACAGTGCTCACTTGAGGGCAAACCACATATTCAGCTAATGAAGAGCTCACTGTGGTTAGGATTCAATCAAACATAACAGCAGAACATAAGCACATTTTATCTGAATTCTGTAATGAATATACATGCTGCACTAACA-TTAAAAAAGCATGGCAGCCTATTCCAAATCAGCAAGAATAGTTTTGTGCAGATAGTGGGTCTTTGTGTGTTTGAACTCCCACCACCTAAGGGCAAACTCGATATGTGTACTAATGACCTACAATTCTCAAAAAAGAAA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112826454 766 - 170124641 TAAGAAGAATGCCAACCAGTGCCCTTTTGCGTACTGGGACTTGTAGTCATGTGATTAAAACAGGTAATATGAACTCTGACTTTAAA--GTATTGTAGATATAAAGGCTCTAAGCTAGAAAAGATTTTCCACATCCACAGTCAATGACGGGAGCCTTTCATTCCTCAGAAATAATCCC-TTTTAGGTCATTGAGAAAGAGTCCAACTGCTGCAGCTCATGCTGCGATATCTTCATGAGCCCAGAGCACGTACAAATCCTCAGGGAACTACCATAGAACCGCGCTCATTCCTGGCACCAGAACAAATGAAACACACTCTATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCAAAATGTTATCACTCCCATCCCCAATACACAGAAAATAGGGGAAAGGCTGTTTCCACTTCTTGGCCTTTAAACAACTCTAAATAAGAC-ACTCACGGTGGCATATTACAAAGTAATCAACAGTG-ACACTTGGAGGTAAACCACATATTGAGCTAATGAAGAGGTCACTGTGATTAGGATTCGATCAAACATAATAGCAGAACATAAGCAGATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACA-TTTAAAAAGCAGGGCAGCCTATTCCAAACCAGTAAGAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTGTTTGAACTCCCACCATGTAAGGGCAAACTCGATATGTGAGCTAATGACCTACAATTATCAAATTAAAAA
i rheMac3.chr7                  I 1014 I 75
s macFas5.chr7                   61611069 770 + 171882078 AAAGAAGAATGCCAACCAGTGCCCTTTTGTGTGATGGGACCTGTAGTCATGTGATTGAAATAGGTAACATGGACTCTGATTTTAAA--ATGTATTGTATATATTTGCGCTAAGCTAGAAAAGGTTTTCCCTATCCACAGTCAATGATGGGAGCCTTTCCTTCCTCAGAAATAATCCCTTTTTAGGTCATTGAGAAAGAGTACAAAGGCCACAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGAACTACCATAGTACCGCGCTCATTCTTGGCACCAGAACGAAGGAAACACACTGTATCCTGCAGGCACCTGCCAAAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAATGTTATTACACCCATCCCCAATACACAGAAAATAGAGGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTGTAAATGTCACTACTCACAGTGGCATATTACAAAGTAATAAACAGTGTGCACTTGAGGGCAAACCATATATTGAGCTAATGAAGAGCTCGCTGTGATTAGGATTCGAGCAAACATAATATCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAACATACATGCTGCAAAAACATTTTAAAAACCATGGCAGCCTATTCCAAACCAGCAAGAATAATTTTGCGCAAATAGTGGGTCTTTGTGTGCTTGAACTCCCACCAGGTAAAGGCAAACTCGATATGCGAGCTAACGACTTACAATTATCAAATTAAAAA
i macFas5.chr7                  C 0 I 5
s papAnu2.chr7                  108945121 770 - 162156779 TAAGAAGAATGCCAAGCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGTAACATGAACtctgactttaaaatgtattgtagATATAAATGCTCTAGGCTGGGAAAGGTTTTCCACATCCACAGTCAATAATGGGAGCCTTTCATTCCTCAGAAAGAATCCCTTTTTAGGTCATTGAGAAAGAGTCCAACTGCTGCAGCTCATGCTGCGATATCTTCATGAGCCCAGAGCACATACAAATCCTCAGGGAACTACCATAGTACCGCGCTCATTCCTGGCACCAGAACAAATGAATCACACTCTATCCTGCACACACCTGCCAGAACAGGccactttcctcttctgtgagaTTTAAAAAGCTCCCCAAAATGTTATCACTCCCATCCCCAATACACAGAAAATAGGGGAAAGGCTGTTTCCAGTTCTTGGCCTTTAAACAACTCTAAATGTCAGTAACCACAGTGGCATATTACAAAGTAAGAAACAGTGCGCACTTGAGGGCAAACCACATGCTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAATAGCAGAACATAAGCCAATTTTATCTGAATTCTGTAATGAATATACATGCtgcaataaca-tttaaaaagcatgGCAGCCTATTCCAAACCAGTAAGAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTGTTTGAACTCCCACCATGTAAGGGCAAACTCAATATCCGTGCTAATGACCTACAattatc-aattaaaaa
i papAnu2.chr7                  C 0 I 4
s chlSab2.chr29                   1338739 772 +  24206276 AAAGAAGAATGCCAACCAGTGCCCTTTTGTGTGATGGGACCTGTAGTCATGTGATTGAAATAGGTAACATGGACTCTGATTTTAAAATGTATTGTAGATATAAATGCGCTAAGCTAGAAAAGGTTTTCCCTACCCACAGTCAAAGATGGGAGCCTTTCCTTCCTCAGAAATAATCCCTTTTTAGGTCATTGAGAAAGAGTACAACGGCCACAGCTCATAATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTGAGGGAACTACCATAGTACCGCGTTCATTCTTGGCACCAGAACGAAGGAAACACACTGTATCCTGCGCGCACCTGCCAAAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAATATTATTACTCCCATCCCCAATACACAGAAAATAGAGGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTGTAAACATCACTACTCACAGTGGCATATTACAAAGTAATAAACAGTGTGCACTTGAGGGCAAACCATATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAATATCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAACATACATGCTGCAAAAACATTTTAAAAACCATGGCAGCCTATTCCAAACCAGCAAGAATAATTTTGCACAAATAGTGGGCCTTTGTGTGCTTGAACTCCCACCAGGTAAAGGCAAACTCGATATGCGAGTTAATGACTTACAATTATCAAATTAAAAA
i chlSab2.chr29                 C 0 I 5
e ponAbe2.chr15                  17468957   0 -  99152023 C

a score=65035.000000
s hg38.chr15_KI270850v1_alt         52525 124 +    430880 AATGCTAAAAGATGCCAGAGTGAACATGAGAGAAAGACCCACTCTCATTTAACTTtttacaaataaatttaaattataaattagaaacacaaataaatttaaactataaattagaaacacaaat
s panTro4.chr15_GL392289_random     55656 124 -    187897 AATGCTAAAGGATGCCAGAGTGAACATGAGGGAAAGACCCACTCTCATTTAACTTTTTACAGATAAATTTAAACTATAAATTAGAAACACaaataaatttaaactataaattagaaacataaat
i panTro4.chr15_GL392289_random C 0 I 73047
s nomLeu3.chr6                   22727960  93 - 121039945 AATGCTAAAGGATGCCAGAGTGAACATCAGGGAAAGACCAACTCTCCCTTAACTTTTTACAAATAAATTTAAACTGTAAATTAGAAACACAAA-------------------------------
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   61611844  63 + 171882078 AATGCTAAAGGATGCGAGAGTGAACATCAGGGAAAGATCCACTCTCCC-TAATTTTCTACAAAT------------------------------------------------------------
i macFas5.chr7                  I 5 C 0
s papAnu2.chr7                  108945895  64 - 162156779 aatgctaaagGATGCCAGAGTGAACATCAGGGAAAGACCCACTCTCCCTTAACtttctacaaat------------------------------------------------------------
i papAnu2.chr7                  I 4 C 0
s chlSab2.chr29                   1339516  63 +  24206276 AATGCTAAAGGATGCGAGAGTGAACATCAGGGAAAGATCCACTCTCCC-TAACTTTCTACAAAT------------------------------------------------------------
i chlSab2.chr29                 I 5 C 0
e rheMac3.chr7                  112827220  75 - 170124641 I
e ponAbe2.chr15                  17468957   0 -  99152023 C

a score=1100.000000
s hg38.chr15_KI270850v1_alt         52649 30 +    430880 aaatttaaattataaattagaaacacaaat
s panTro4.chr15_GL392289_random    128827 30 -    187897 aaatttaaactataaattagaaacataaat
i panTro4.chr15_GL392289_random I 73047 T 73077
s macFas5.chr7                   61611907  4 + 171882078 --------------------------AAAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108945959  4 - 162156779 --------------------------aaat
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1339579  4 +  24206276 --------------------------AAAT
i chlSab2.chr29                 C 0 C 0
e rheMac3.chr7                  112827220 75 - 170124641 I
e nomLeu3.chr6                   22728053  0 - 121039945 C
e ponAbe2.chr15                  17468957  0 -  99152023 C

a score=40571.000000
s hg38.chr15_KI270850v1_alt         52679 44 +    430880 ttaaactataaattAGAAACACAAATAAACATAAGTGGCTCTAA
s panTro4.chr15_GL392289_random     55780 44 -    187897 ttaaactataaattaGAAACACAAATAAACATAAGTGGCTCTAA
i panTro4.chr15_GL392289_random T 73077 C 0
s nomLeu3.chr6                   22728053 18 - 121039945 --------------------------AAATATGAGTGGCTCTAA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   61611911 44 + 171882078 TTAAACTGTAAATTAGAAACACAAATGAACATGAGTGGCTCTAA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108945963 44 - 162156779 ttaaactgtAAATTAGAAACGTAAATAAACATGAGGGGCTCTAA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1339583 44 +  24206276 TTAAACTGTAAATTAGAAACACAAATAAACATGAGTGGCTCTAA
i chlSab2.chr29                 C 0 C 0
e rheMac3.chr7                  112827220 75 - 170124641 I
e ponAbe2.chr15                  17468957  0 -  99152023 C

a score=95235.000000
s hg38.chr15_KI270850v1_alt         52723 82 +    430880 CATTCAAATGAAGTAAATGAATTGTGTAGGATATTAACCCCTTAAA-TGttttgttttttttttttttCAATTTCTTGACCCG
s panTro4.chr15_GL392289_random     55824 83 -    187897 CATTCAAATGAAGTAAATGAATTGTGTAGGATATTAACCCCTTAAACtttttttttttttttttttttAAATTTCTTGACCCG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22728071 78 - 121039945 CATTCAAACGGAGTAAAAGAATTGTGTGGGAGATTAACCCCATCAC-----TTTTTGTTGTTGTTTTTAAATTTCTTGACCAG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112827295 76 - 170124641 CATTCAAATGAAGGAAATGAATTGTGTAGGAGATTAAC-----CAC--ATTTCGTTGTTGTTGATTTTAAATTTCTTGACCAG
i rheMac3.chr7                  I 75 C 0
s macFas5.chr7                   61611955 81 + 171882078 CATTCAGATGAAGTAAATGAATCGTGTACGAGATTAACGCCATAAC--TTTTTGTTGTTGTTGTTTTTCAATTTCTTGACCAG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108946007 73 - 162156779 CATTCCAATGAAGTAGATGGATTGTGTAGGGGATTGaccccataat--tttttttt--------tttttaatttcttgaccAG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1339627 81 +  24206276 CATTCAGATGAAGTAAATGAATTGTGTACTAGATTAACGCCATAAC--TTTTTGTTGTTGTTGTTTTTCAATTTCTTGACCAG
i chlSab2.chr29                 C 0 C 0
e ponAbe2.chr15                  17468957  0 -  99152023 C

a score=131698.000000
s hg38.chr15_KI270850v1_alt         52805 59 +    430880 CTCTTAGATGATGGTGATGTTTAGCTCCCTGTTCTCCGCAGCCCG--AAAAGAATGGCATG
s panTro4.chr15_GL392289_random     55907 59 -    187897 CTCTTAGATGATGGTGATGTTTAGCTCTCTGTTCTCGGCGGCCCG--AAAAGAATGGCATG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17468957 59 -  99152023 CTCTTAGATGATGGTGATGTTTATCTCCCTGTTCTTGGCAGCCCA--AAAAGAATGGCATG
i ponAbe2.chr15                 C 0 I 14
s nomLeu3.chr6                   22728149 61 - 121039945 CTCTTAGATGATGATGATGTTTATCTCCCTGTTCTTGGCTGCTCGGTAAAAGAATGGCATG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112827371 61 - 170124641 CTCTCAGATGATGATGATGTTTATCTCTCTGTTCTCGGCTGCCCGGTAAAAGAATGGCACG
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   61612036 61 + 171882078 CTCTTAGATGATGATGATGTTTATCTCCCTGTTCTCGGATGCCCGGTAAAAGAATGGCATG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108946080 61 - 162156779 CTtttagatgatgatgatgtttaTCTCCCTGTTCTTGGCTGCCCGGTAAAAGAATGGCACG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1339708 61 +  24206276 CTCTTAGATGATGATGATGTTTATCTCCCTGTTCTCGGATGCCCGGTAAAAGAATGGCATG
i chlSab2.chr29                 C 0 C 0

a score=6111.000000
s hg38.chr15_KI270850v1_alt         52864 3 +    430880 CAG
s panTro4.chr15_GL392289_random     55966 3 -    187897 CAG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22728210 3 - 121039945 CAG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112827432 3 - 170124641 CAG
i rheMac3.chr7                  C 0 I 11
s macFas5.chr7                   61612097 3 + 171882078 CAG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108946141 3 - 162156779 CAG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1339769 3 +  24206276 CAG
i chlSab2.chr29                 C 0 C 0
e ponAbe2.chr15                  17469016 14 -  99152023 I

a score=887.000000
s hg38.chr15_KI270850v1_alt         52867 9 +    430880 CCTCTTCTG
s panTro4.chr15_GL392289_random     55969 9 -    187897 CCTCTCCTG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22728213 9 - 121039945 GGTTTGCTG
i nomLeu3.chr6                  C 0 I 2
e chlSab2.chr29                   1339772 0 +  24206276 C
e papAnu2.chr7                  108946144 0 - 162156779 C
e macFas5.chr7                   61612100 0 + 171882078 C
e rheMac3.chr7                  112827435 11 - 170124641 I
e ponAbe2.chr15                  17469016 14 -  99152023 I

a score=-1208.000000
s hg38.chr15_KI270850v1_alt         52876 40 +    430880 CTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCACT
s panTro4.chr15_GL392289_random     55978 40 -    187897 CTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCACT
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                   61612100 11 + 171882078 ----------------------------GGTTTGGTGGC-
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108946144 11 - 162156779 ----------------------------GGTTTGGTGGC-
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1339772 11 +  24206276 ----------------------------GGTTTGGTGGC-
i chlSab2.chr29                 C 0 C 0
e rheMac3.chr7                  112827435 11 - 170124641 I
e nomLeu3.chr6                   22728222  2 - 121039945 I
e ponAbe2.chr15                  17469016 14 -  99152023 I

a score=505630.000000
s hg38.chr15_KI270850v1_alt         52916 243 +    430880 CAAGCCTGGGTGCTCCTGGGGAGTCCTGCATTAGAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCATGGGGGAGAACCCTCCCTGTCCTCTCCCGGTGCAGCCTCCATGCTATCAGTGAGGCTCAGCTCACTAAGATCTTCAGAGAGAGGGAGGGGG-TGGGAATCTGGGCACAGTGCGAGCCTCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGGGCTCTACTCACCACCCTGCT
s panTro4.chr15_GL392289_random     56018 244 -    187897 CAAGCCTGGGTGCTCCTGGGGAGTCCTGCATTAGAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCATGGGGGAGAACCCTCCCTGTCCTCTCCCGGTGCAGCCTCCATGCTATCAGTGAGGCTCAGCTCACTAAGATCTTCAGAGAGAGGGAGGGGGGTGGGAATCTGAGCACAGTGCGAGCCTCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGGGCTCTACTCACCACCCTGCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17469030 236 -  99152023 CAAGCCTGGGTGCTCCTGGGGAGTCCTGCGTTACAGGAAACACCTGCTGGATCTGCTGCGCAGTGGGGTTGTCAT-GGGGAGAACCCTCCCTGTCCTCTCCTGGTGCAGCCTCCACGCTGTCAGTGAGGCTCACCTCACAAAGATCTTT------AGGGGGGCGG-TGGGAATCTGAGCACAGTGCAAGCCTCCCCTGCCCCTGCCTGCCCACCCCGGCTGAGGGCTCTACTCACCACCCTGCT
i ponAbe2.chr15                 I 14 C 0
s nomLeu3.chr6                   22728224 238 - 121039945 CAAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGCTGCGTGATCTTCTGTGCAGTGGGGTTGTCAT-GGGGAGAACCCTCCCTGGCCGCTCCTGGTGCAGGCTCCATGCTGTTGTCCAGGCTCACCTCATAAAAATCTTCAGAGAGAGGGAGG----CGGGGGTCTGAGCACAGTGCCAGCCTCCCCTGCTCCTGCCTGCCCACCCCACCTGAGGGCTCTACTCAGCACTCTGCT
i nomLeu3.chr6                  I 2 C 0
s rheMac3.chr7                  112827446 238 - 170124641 CAAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGCTGTACAACCTTCTGTGCAGTGGGGTTGTCAT-GGGGAGAACCCTCCCTGGCCTGTCCCGGTGCAGGCTCCACGCTGAGGGCCAGGCTCACCTCATAGAAATCTTCGGAGAGAGGGAGG----CAGGGGTCTGAGCACAGTGCGAGCCTCCCCTGCCCCTGCCTGTCCACCCCGCCTGAGGGCTCTACTCACCACCCTGCT
i rheMac3.chr7                  I 11 I 1874
s macFas5.chr7                   61612111 238 + 171882078 CAAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGGTGCACGATCTGCTCTGCAGTGGGGTTGTCAT-GGGGAGAACCCTTCCTGGCCTCTCCTGGTGTGGGCTCCACGCTGTTGTCCAGGCTCACCTCAGAAAAATCTTCAGAGAGAGGGAGG----CAGGGATCTCAGTGCAGGGCCAGCCTCCCCTGCTCCTGCCTGCCCACCCCACCTGAGGGCTCTACTCACCACCCTGCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108946155 238 - 162156779 CAAGCCTGGGTGCTCCTGGGT-GTCCTGCGTTACAGGAAGCAGCTGCAGGATCTTCTGTGCAGTGGGGTTGTCAT-GGGGAGAACCCTCCCTGTCCTCTCCTGGTGCAGGCTCCATGCTGTTGGCCAGGCTCACCTCATAAAAATCTtcggagagagggagg----caggggtcTGAGCACAGTGCTAggctcccctgcccctgcctgcccacCCCACCTGAGGGCTCTACTCACCACCCTGCT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1339783 238 +  24206276 CAAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGGTACATGATCTGCTCTGCAGTGGGGTTGTCAT-GGGGAGAACCCTTCCTGGCCTCTCCTGGTGTGGGCTCCACGCTGTTGTCCAGGCTCACCTCACAAAAATCTTCAGAGAGAGGGAGG----CAGGGATCTCAGTGCAGGGCCAGCCTCCCCTGCTCCTGCCTGCCCACCCCACCTGAGGGCTCTACTCACCACCCTGCT
i chlSab2.chr29                 C 0 C 0

a score=1481.000000
s hg38.chr15_KI270850v1_alt         53159 2 +    430880 TG
s panTro4.chr15_GL392289_random     56262 2 -    187897 TG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17469266 2 -  99152023 TG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22728462 2 - 121039945 CA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   61612349 2 + 171882078 TG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108946393 2 - 162156779 CA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1340021 2 +  24206276 TG
i chlSab2.chr29                 C 0 I 1932
e rheMac3.chr7                  112827684 1874 - 170124641 I

a score=14744.000000
s hg38.chr15_KI270850v1_alt         53161 19 +    430880 TCCGCACATCCAAGCTCCT
s panTro4.chr15_GL392289_random     56264 19 -    187897 TCCGCACACCCAAGCTCCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17469268 19 -  99152023 TCCGCACACCCAAGCTCCT
i ponAbe2.chr15                 C 0 I 1833
s nomLeu3.chr6                   22728464 18 - 121039945 TTGGCAGCCCCAAGTTCC-
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   61612351 19 + 171882078 CCAGCAGCCCCAAGTTCCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108946395 19 - 162156779 TGGGCAGCCCCAAGTTCCT
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                   1340023 1932 +  24206276 I
e rheMac3.chr7                  112827684 1874 - 170124641 I

a score=9514.000000
s hg38.chr15_KI270850v1_alt         53180 15 +    430880 TGTGGGACTGGGGCT
s panTro4.chr15_GL392289_random     56283 14 -    187897 -GTGGGACTGGGGCT
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22728482 15 - 121039945 TGGGGGGCTGGGGCC
i nomLeu3.chr6                  C 0 I 1896
s macFas5.chr7                   61612370 14 + 171882078 -CGGGGGCTGGAGCC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108946414 14 - 162156779 -GGGGGGCTGGGGCC
i papAnu2.chr7                  C 0 I 1892
e chlSab2.chr29                   1340023 1932 +  24206276 I
e rheMac3.chr7                  112827684 1874 - 170124641 I
e ponAbe2.chr15                  17469287 1833 -  99152023 I

a score=1000.000000
s hg38.chr15_KI270850v1_alt         53195 1 +    430880 C
s panTro4.chr15_GL392289_random     56297 1 -    187897 C
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22730393 1 - 121039945 C
i nomLeu3.chr6                  I 1896 C 0
s macFas5.chr7                   61612384 1 + 171882078 C
i macFas5.chr7                  C 0 I 1898
s papAnu2.chr7                  108948320 1 - 162156779 C
i papAnu2.chr7                  I 1892 C 0
e chlSab2.chr29                   1340023 1932 +  24206276 I
e rheMac3.chr7                  112827684 1874 - 170124641 I
e ponAbe2.chr15                  17469287 1833 -  99152023 I

a score=15459.000000
s hg38.chr15_KI270850v1_alt         53196 14 +    430880 CAGGTACTGGTCTG
s panTro4.chr15_GL392289_random     56298 14 -    187897 CAGGTACTGGTCTG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22730394 14 - 121039945 CAGGTACTGGTCTC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   61614283 14 + 171882078 CAGGTTCTAGTCTC
i macFas5.chr7                  I 1898 C 0
s papAnu2.chr7                  108948321 14 - 162156779 CAGGTACTAATCTC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1341955 14 +  24206276 CAGGTACTAGTCTC
i chlSab2.chr29                 I 1932 C 0
e rheMac3.chr7                  112827684 1874 - 170124641 I
e ponAbe2.chr15                  17469287 1833 -  99152023 I

a score=16658.000000
s hg38.chr15_KI270850v1_alt         53210 10 +    430880 GCTGCTGCTG
s panTro4.chr15_GL392289_random     56312 10 -    187897 GCTGCTGCTG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22730408 10 - 121039945 ACTGCTGCTG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112829558 10 - 170124641 GCTGCTGCTG
i rheMac3.chr7                  I 1874 C 0
s macFas5.chr7                   61614297 10 + 171882078 ACTTCTGCTG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108948335 10 - 162156779 ACTGCTGCTG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1341969 10 +  24206276 ACTTCTGCTG
i chlSab2.chr29                 C 0 C 0
e ponAbe2.chr15                  17469287 1833 -  99152023 I

a score=325608.000000
s hg38.chr15_KI270850v1_alt         53220 155 +    430880 CAGACTCGGAGCCTCTTGGCTCTTCAGCTCCA-CCTGCCGGAAGACCCTGGGCATGAGGACA-----TGTGG-TGGCTGGCTTCCAGATTCCTGGCCCATTAATAGGGTAGCGAGGGCACTGT-GGGGCTCTGTGGCCTGCCCAGGCCCCTGGCCCCTTGCTC
s panTro4.chr15_GL392289_random     56322 155 -    187897 CAGACTCGGAGCCTCTTGGCTCTTCAGCTCCA-CCTGCCGGAAGACCCTGGGCATGAGGACA-----TGTGG-TGGCTGGCTTCCAGATTCCTGGCCCATTAATAGGGTAGCGAGGGCACTGT-GGGGCTCTGTGGCCTGCCCAGGCCCCTGGCCCCTTGCTC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17471120 160 -  99152023 CAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCCTGCTGGAAGACCCTGGGCAT---GACATTCTCTGTGGTTGGCTGGCTTCCAGCTTCCTGGCCCATTAATAGGGTAGCTAGGGCATTGTGGGGGCTCTGTGGCCTGCCCAAGCCCCTGGCCCCTTGCTC
i ponAbe2.chr15                 I 1833 C 0
s nomLeu3.chr6                   22730418 135 - 121039945 CAGACTCTGAGACTCTTGGCTCTTCAGCTCCA-CCTGCAGGAAGGCCCTGGGCATGAGGGCA-----CATGG-TGGCTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCCAGGGCACTGT-GGGGCTCTGT--------------------CACCTGCTC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112829568 155 - 170124641 CAGATTGTGAGATTCTTGACTCTTCAGCTGTA-TCTGCAGGAAGACCCTGGGCATGAGGGCA-----TGTGG-TGGTTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCGAGGGCACGGT-GGGGCTCTGTCACCTGCCCGGGACCCTGGCCCCTTGCTC
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   61614307 155 + 171882078 CAGACTCTGAGACTCTTGGCTCTTCAGCTCCA-CCTGCAGGAAGACCCTGGGCATGAGGGCA-----CGTGG-TGGCTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCAAGGGAACTGT-GGGGCTCTGTCACCTGCCCAGGCCCCTGGCCCCTTGCTC
i macFas5.chr7                  C 0 N 0
s papAnu2.chr7                  108948345 155 - 162156779 CTGACTGTGAGATTCTTGGCTCTTCAGCTCCA-CCTGCAGGAAGACCCTGGGCATGAGGGCA-----TGTGG-TGGTTGACTTCCAGATTCTGGGCCCATTAATAGGGTAGCGAGGGCACAGT-GGGGCTCTGTCACCTGCCCAGGCCCCTGGCCCCTTGCTC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   1341979 155 +  24206276 CAGACTCTGAGACTCTTGGCTCTTCAGCTTCA-CCTGCAGGAAGACCCTGGGCATGAGGGCA-----CGTGG-TGGCTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCAAGGGAACTGT-GGGGCTCTGTCACCTGCCCAGGCCCCTGGCCCCTTGCTC
i chlSab2.chr29                 C 0 N 0

a score=99109.000000
s hg38.chr15_KI270850v1_alt         53375 49 +    430880 CAGGCCTAAGAGA--CTGTCTCCCTTGCCTAGAACCCCATGCCTCCTT-CCC
s panTro4.chr15_GL392289_random     56477 49 -    187897 CAGGCCTAAGAGA--CTGGCTCCCTTGCCTAGAACCCCATGCCTCCTT-CCC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17471280 50 -  99152023 CAGGCCTAAGAGACTCTGCCTCCCTTGCCTA-AAGTCCATGCCTCCTT-CCC
i ponAbe2.chr15                 C 0 I 819
s nomLeu3.chr6                   22730553 49 - 121039945 CAGGCCTAAGAGA--CTTCCTCCCTTGCCTAGAACCCCATGCCTCCTT-CCC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112829723 49 - 170124641 CAGGCCTAAGAGA--CATCCCCCCTTGCCTAGAACCCCATGCCTCCTT-CCC
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  106458542 49 - 171882078 caggcctaagtga--ctgcCTCCCTTGCCTGGAACCCCATGCCTCTTT-CCT
i macFas5.chr7                  N 0 C 0
s papAnu2.chr7                  108948500 50 - 162156779 CAGGCCTAAGAGA--CTTCCTCCCTTTCCTAGAACCACATATTTCCTTCCCC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20302015 49 -  24206276 caggcctaagtga--ctgcCTCCCTTGCCTGGAACCCCATGCCTCTTT-CCT
i chlSab2.chr29                 N 0 C 0

a score=403021.000000
s hg38.chr15_KI270850v1_alt         53424 254 +    430880 TAGCATCAAATCTCACGTCCTTTTTCCCAGCATGTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGGCGGAGCCAACCaccatctgctaagtgtgctacatgcctaatg-tttccacgtattatctcatttaatcctcagcacctctgcaaggaaaaggctaacttccttttgaagttaaagaaacagagacttagagatgcaaagtagttGAATTATGACCAGTGGAACCGAGGCCGGAATCCAGTTTGAATC
s panTro4.chr15_GL392289_random     56526 254 -    187897 TAGCATCAAATCTCACGTCCTTTCTCCCAGCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGGCGGAGCCAACCaccatctgctaagtgtgctacatgcctaatg-tttccacgtattatctcatttaatcctcagcacctctgcaaggaaaaggctaacttccttttgaagttaaagaaacagagacttagagatgcaaagtAGTTGAATTATGACCAGTGGAACCGAGGCCGGAATCCAGTTTGAATC
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22730602 255 - 121039945 CAGCCTCAAATCTCACATCCTTCTTCCCACCGTTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCaaccaccatctgctaagtgtgctacatgcctaatgctttccatgtattctctcattcaatcctcagcgcctctgcaaggaaaatgctaacttccttttgaagttacagaaacagagactaagagTTGAACAGTAGTTGAATGGTGACCAGTGGAACCGAGGCTGGAATCCAGTTTGAATC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112829772 255 - 170124641 CAGCCTCAAATCTCCTGTCCTTCTTCCCACCATTTAAACTGTAGACCACAGACTGGTGGAAAAGCTGAGGGAGCCAAtcaccatctgctaagtgtgctccatgcctaatgctttccatgtgttctctcatttaatcccaggcacctccataagaaaaatgctaacttccttttgaagtcaaagaaacagagacttagagatgaaaagtagttgaatggtgaccagtggaatcgaggttggaatccaggttgaatc
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  106458591 253 - 171882078 CAGCCTCAAATCTCACATCC-TCTTCTCACCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCAACCACCATCTGCTGAGtgtgctacatgcctaatg-tttccacctattatctcatttaatcctcaaaccctctgcaaggaaaaagctcacttcctttttaagtgaaagaaaccaagacttagagatgcaaggtagttcaatggtgagcagtggagccgaggttggaattcaggtTGAATC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108948550 255 - 162156779 CAgcctcaaatctcatgtccttcttcCCACCATTTAAACTGTAGACCACAGACTGGTGGAAAAGCTGAGGGAGCCAATGACCATCTGCTAAGTGTGCTCCATGCCTAATGCTTTCCATgtgttctctcatttaatccccagCACCtccataagaaaaatattaacttcCTTTTGAAGTTAAAGAAACAGAGACTTAGAGATGAAAAGTAGTTGAATGGTGACCAGTGGAATCGAGGTTGGAATCCAGTTTGAATC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20302064 253 -  24206276 CAGCCTCAAATCTCACATCC-TCTTCTCACCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCAACCACCATCTGCTGAGTGTACTACACACCTAATG-tttccacctattatctcatttaatcctcaaaccctctgcaaggaaaaagctcacttcctttttaagtgaaagaaaccaagacttagagatgcaaggtagttcaatggtgagcagtggagccgaggttggaattcaggtTGAATC
i chlSab2.chr29                 C 0 C 0
e ponAbe2.chr15                  17471330 819 -  99152023 I

a score=9230.000000
s hg38.chr15_KI270850v1_alt         53678 8 +    430880 TAAGGAGT
s panTro4.chr15_GL392289_random     56780 8 -    187897 TAAGGAGT
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22730857 8 - 121039945 TAAGGAGC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112830027 8 - 170124641 taaggAGG
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  106458844 8 - 171882078 TAAGGAGG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108948805 8 - 162156779 TAAggagg
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20302317 0 -  24206276 C
e ponAbe2.chr15                  17471330 819 -  99152023 I

a score=30699.000000
s hg38.chr15_KI270850v1_alt         53686 60 +    430880 Cttttttgtttttctgttttgttttgttttgag--agagtgtcactctgtgtcccaggctgc
s panTro4.chr15_GL392289_random     56788 60 -    187897 Cttttttgtttttctgttttgttttgttttgag--agagtgtcactctgtgtcccaggctgg
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22730865 52 - 121039945 Cttttt--------tgttttgttttgttttgag--acagtgtcactctgtggcccaggctgg
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112830035 49 - 170124641 -------------Cttttttgttttatttggagacagagtgtcaccttgtggcccaggctgg
i rheMac3.chr7                  C 0 C 0
s papAnu2.chr7                  108948813 49 - 162156779 -------------cttttttgttttattttgagacagaatgtcacCTTGTGGCCCatactgg
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20302317  0 -  24206276 C
e macFas5.chr7                  106458852  0 - 171882078 C
e ponAbe2.chr15                  17471330 819 -  99152023 I

a score=272218.000000
s hg38.chr15_KI270850v1_alt         53746 260 +    430880 agtgcagtggtgcaatctcagctca-------------------ctgcaaccttcatctcccgggctcaagtgattctcgtgtctcagcctcctgagtagctgggattacaggcatgcaccaccaggcccggctaat-tattattattatt---tttaattttagtagagatgagctttcaccatgttggccatgttggtctcaaactcctgacctcaagtgattgtcctgcctcagcctcccaaagtgctgggattgcaggcgtgagccaccacacccgacA
s panTro4.chr15_GL392289_random     56848 263 -    187897 agtgcagtggtgcaatctcagctca-------------------ctgcaaccttcacctcccgggctcaagtgattctcgtgtctcagcctcccgagtagctgggattacaggcatgcaccaccaggcccggctaat-tattattattattatttttaagtttagtagagatgagctttcaccatgttggccatgttggtctcaaactcctgacctcaagtgattgtcctgcctcagactcccaaagtgctgggattgcaggcgtgagccaccacacccgacA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17472149 257 -  99152023 agtgcagtggtgcgatc-cagctca-------------------ctgcaaccttgacctcccgggctcaattgattctcgtgtctcatcctcctgagtagctgggattacagtcatgcaccaccaggcctggctaat-tattat--ttttt---cttaattttagtagagatgaggtttcgccatattggccacgctggtctcaaactcctgacctcaagtgattgtcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccacacccgacA
i ponAbe2.chr15                 I 819 C 0
s nomLeu3.chr6                   22730917 258 - 121039945 agtgcagtggtgcaatctcagctca-------------------ctgcaacctccacctcccaggctcaagcgattctcatgcctcagcctcctgagtagctgggattataggcatgtgccaccatgcctggctaat-tttttt--tttgt---tttaattttagtagagatgaggtttcgccatgttggctaggctggtctcaaacccttgacctcaagtgattctcctgcctcagcctcccaaagtgctgggattacaggcacgagccaccgtgcccggcA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112830084 258 - 170124641 agtgcagtggtgcaatctcggctcannnnnnnnnnnnnnnnnnn---------------------ctcaagcgattctcgtgcctcagcctcctgagtagctgagattacaagcatgcgccaccgtgcctggctaatttgttgttgttgtt---gtt-attttagtagagatgaggttttgcaattttggccaggttggtctcaaactcctgacctcaagtaattctcctgcctcagcctcccaaagtgctgggattacaggcaggagccactgtgcccggcA
i rheMac3.chr7                  C 0 C 0
s papAnu2.chr7                  108948862 257 - 162156779 agggcagtggtgcaatctcgactca-------------------ctgcaacatccacctcccaggctcaagcgattctcgtgcctcagcctcctgagtagctgagattacaggcatgtgccaccatgccgggctaat---ttgttgttgtt---gtt-atttcagtagagatgaggttttgcaattttggccaggttggtctcaaactcctgacctcaagtaattctcctgcctcagcctcccaaagtgctggggttacaggcaggagccactgtgcccggca
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20302317   0 -  24206276 C
e macFas5.chr7                  106458852   0 - 171882078 C

a score=13962.000000
s hg38.chr15_KI270850v1_alt         54006 8 +    430880 TAAGGAGC
s panTro4.chr15_GL392289_random     57111 8 -    187897 TAAGGAGC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17472406 8 -  99152023 CAAGGAGC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22731175 8 - 121039945 TAAGGAGC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112830342 8 - 170124641 TAAGGAGC
i rheMac3.chr7                  C 0 C 0
s papAnu2.chr7                  108949119 8 - 162156779 taaGGAGC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20302317 8 -  24206276 TAAGGAGG
i chlSab2.chr29                 C 0 C 0
e macFas5.chr7                  106458852 0 - 171882078 C

a score=89345.000000
s hg38.chr15_KI270850v1_alt         54014 48 +    430880 CTCTTATACCACTGTCTCTTCCTCTGTGATTGGGGGGCTCCATGCCTC
s panTro4.chr15_GL392289_random     57119 48 -    187897 CTCTTATACCACTGTCTCTTCCTCTGTGATTGGGGGGCTCCATGCCTC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17472414 48 -  99152023 CTCTTATACCACTGTCTCTTCCTCTGTGATTGGGGGGCTCCATGCCTC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22731183 48 - 121039945 CTCTTATACCACCATCTCTTCCCCTATGATTGGGGGAATCCATGCCTC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112830350 47 - 170124641 CTCTTGttcagctgtctcttcccctatggttagggaa-tccatgcctt
i rheMac3.chr7                  C 0 I 73
s macFas5.chr7                  106458852 48 - 171882078 CTCTTATAATACTGTCTCTTTCCTTATGACTGGGGAGCTCCACGCCTC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108949127 48 - 162156779 CTCTTGTTCCACTGTCTCTTCCTCTATGGTTGGAGTAATCTATGCCTT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20302325 48 -  24206276 CTCTTATAATACTGTCTCTTTCCTTATGACTGGAGAGCTCCACGCCTC
i chlSab2.chr29                 C 0 C 0

a score=121143.000000
s hg38.chr15_KI270850v1_alt         54062 74 +    430880 TAGCTGGGATGATGATGATGTCCAGACCTGGGAGGGCCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGA
s panTro4.chr15_GL392289_random     57167 71 -    187897 TAGCTGGGATGATGATG---TCCAGACCTGGGAGGACCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17472462 71 -  99152023 TAGCTGGGATGATGATG---TCCGGACCTCAGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22731231 71 - 121039945 TAGCTGGGATGATGATG---TCCAGATCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCACAGGGCAGGA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106458900 71 - 171882078 TAGCTGGGATGATGACG---TTCAGACCTGGGAGGAATCCAGGGCTACCCACCTCTAAAATTCGGAGGGCAAGA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108949175 71 - 162156779 TAGCTGGGGTGATGATG---TCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20302373 71 -  24206276 TAGCTGGGATGATGACG---TTCACACCTGGGAGGAATCCAGGGCTACCCACCTCTAAAATTCGGAGGGCAAGA
i chlSab2.chr29                 C 0 C 0
e rheMac3.chr7                  112830397 73 - 170124641 I

a score=237233.000000
s hg38.chr15_KI270850v1_alt         54136 111 +    430880 AGCAAGAAACAGTCATAGGACTGCCCCGGAGGGTGCTGGGGTCACCTGTCCCCAG-GCTGCAGCTGCCTGTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGTGCCCGCCTCC
s panTro4.chr15_GL392289_random     57238 111 -    187897 AGCAAGAAACAGTCATAGGACTGCCCCGGAGGGTGCTGGGGTCACCTGTCCCCAG-GCTGCAGCTGCCTGTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGTGCCCGCCTCC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17472533 111 -  99152023 AGCAAGAAACAGTCATAGGACTGCCCTGGAGGGTGCTGGGGTCACCTGCCCCCGG-GCTGCAGCTGCCTCTGGCCTGGCACCTCCCCTCCCCAGGGGTGGGTGCCTGCCTCC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22731302 109 - 121039945 AGCAAGAAACATTCATAGGGCTGCCCTGGAGGGTGCTGGGGTCACCTGCCCCCCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCCTCCC--AAGGCTGGTGCCCGCCTCC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112830470 111 - 170124641 catAAGAAACAGTCATGGAGCTGCCCTGGAGGTTGCTGCCATCACCTGCCCCCCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGTGCCCGCCTCC
i rheMac3.chr7                  I 73 C 0
s macFas5.chr7                  106458971 112 - 171882078 AGCAAGAAACAGTCACAGCACTGCCCTGGAGGCTGCTGGGGTCACCTGTCCCCCAGGCTGGAGCTGCCTCTGGCCTCGCACCTCCCTTCCCCAGAGACTGGTGCCCGCCTCC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108949246 110 - 162156779 AGCAAGAAACAGTCATGGAGCTGCCCTGGAGGTTGCTGCCATCACCTG-CCCCCA-GCTGGAGCTGCCTTTGGCCTggcacctcccctccccagaggctggTGCCTGCCTCC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20302444 112 -  24206276 AGCAAGAAACAGTCACAGCACTGCCCTGGAGGCTGCTGGGGTCACCTGTCCCCCAGGCTGGAGCTGCCTCTGGCCTCGCACCTCCCTTCCCCAGAGACTGGTGCCCGCCTCC
i chlSab2.chr29                 C 0 I 212

a score=77536.000000
s hg38.chr15_KI270850v1_alt         54247 57 +    430880 CACATCTTCTTGGATGGGTCAGAGGTTACAGTCTCTTTCAGCTCACCCGACTTCTC---C
s panTro4.chr15_GL392289_random     57349 57 -    187897 CACATCTTCTTGGATGGGTCGGAGGTTACAGTCTCTTTCAGCTCACCCGACTTCTT---C
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17472644 57 -  99152023 CAGCCCTTCTTGGATGGGTCAGAGGTTACCATCTCTTTCAGCTCACCCAGCTTCTT---C
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22731411 60 - 121039945 CAGCCCTTCTTGGATGGGGCAGAGGTTACCATCTTCTTCACCTCGCCTGGCTTCTCCTGC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112830581 57 - 170124641 CAGCCCTTCTTGGATGGGGCAGAGGTTACCATCTCCTTCACCTCGCTCAGCTTCTC---C
i rheMac3.chr7                  C 0 I 3
s macFas5.chr7                  106459083 57 - 171882078 TAGCCCTTATTGGATGGGGCAGGGGTTGCTATCTGCTTCGGCTTGGCCAGCTGCTC---C
i macFas5.chr7                  C 0 I 97
s papAnu2.chr7                  108949356 57 - 162156779 CAGCCCTTCTTGGATGGGGCAGAGGTTACCGTCTCCTTCACCTCGCTCAGCTTCTC---C
i papAnu2.chr7                  C 0 I 3
e chlSab2.chr29                  20302556 212 -  24206276 I

a score=228337.000000
s hg38.chr15_KI270850v1_alt         54304 189 +    430880 AGCTCCTTTACTTGCTGCTCCAACTGCAGTGTGCTCTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTAGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAAT-ATCCCCTCTCTCCCACAGCCATCAGAGCGGG---------GC
s panTro4.chr15_GL392289_random     57406 189 -    187897 AGCTCCTTTACTTGCTGCTCCGGCTGCAGTGTGCTCTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTAGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAAT-ATCCCCTCTCTCCCACAGCCATCAGAGCAGG---------GC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17472701 190 -  99152023 AGCTCCTTTACTTGCTGCTCCAACTGCAGTGTGCTCTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTGGGGTCTGCCTCCCATGGCACCAGGAAGGGTGGAGGCAGATTAGAAAAATCATCCCCTCTCTCCCACAGCCATGAGAGCAGG---------GC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22731471 196 - 121039945 AACTCCTTTGCTTCCTGCTCAAATTGCAGTGCGCTC---TTCTCGTTGTTCTGCACAGAGAGAAGCAATCAGTGGCCATCCGCTGCAGCTGGGGACCCCTGAACTTGGTGTCTGCCTCCCATGTCACCGGGAAGGGTGGAGGCAGGTTAGAAAAATCATCCCCTCTCCCCCACAGCCATCAGAGGAGGGCCTGATGAGC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112830641 190 - 170124641 AGCTGCTTTACTTGCTGCTACAACTGCAGTGCGCTCTTGTTCTTGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCAGCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGTCACCGGGAAGGGTGGAGGCAGGTTAGAAAAACCATCCCGTCTCCCCAACAGCCATCAGAGCAGG---------GC
i rheMac3.chr7                  I 3 I 3700
s papAnu2.chr7                  108949416 190 - 162156779 AGCTCCTTTACTTGCTGCTCCAACTGCAGTGCGCtcttgttctcattgttctggaCAGAAAGAAGCAATCAGTGGCCAGCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGTCACTGGGAAGGGTGGAGGCAAGTTAGAAAAATCATCCCCTCTCCCCCACAGCCATCAGAGCAGG---------GC
i papAnu2.chr7                  I 3 I 9
e chlSab2.chr29                  20302556 212 -  24206276 I
e macFas5.chr7                  106459140  97 - 171882078 I

a score=124972.000000
s hg38.chr15_KI270850v1_alt         54493 156 +    430880 TCTGGCTCACAGATGCCTTTAGAAGTACCATTTCATGTGAAGGCTACAATGccccattttacaggtggggaaacaaaggccttgagggctaggGAAGAGGGCAGCCTCCCCAGGTGGGGCAACGTACCAGCTCCTCGAAGCCGCTGCGTGGCTCGG
s panTro4.chr15_GL392289_random     57595 156 -    187897 TCTGGCTCACAGATGCCTTTAGAAGTACCATTTCATGTGAAGGCTACAATGccccattttacaggtggggaaacaaaggccttgagggttaggGAAGAGGGCAGCCTCCCCAGGTGGGGCAACGCACCAGCTCCTCGAAGCCGCTGCGTGGCTCGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17472891 156 -  99152023 TCTGGCTCACAGGTGCCTTTAGAagtaccatttcatatgaaggctacaatgccccattttacaggtggggaaacaaaggccttgagagCTAGGGAAGGGGGCATCCTCCCCAGGTGGGGCAATGCACCAGCTCCTCAAAGCCGCTGTGTGGCTCCG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22731667 156 - 121039945 TCTGGCTCACAGGTGCCTTTAGAAGTACCATTTCACGTGAGGGCTACGCTGTcccattttacaggtggggaaacaaaggcctggagggAGAGGGATGAGGGGAGGCTCCCCAGGTGGGGCAACCCACCAGATCCTCGAAGCCGCGCTGTGGCTCGG
i nomLeu3.chr6                  C 0 I 38
s papAnu2.chr7                  108949615 156 - 162156779 TCTGGCTCACAGATGCCTTTAGAAGTACCATGTCATGTGAGGGCTACActgcctcattttacaggtggggaaacaaaGGCCTGGAGGGCTAGGGATGAGGGCAGGCTGCCCAGGTGGGGCAACCCACCAGATCCTCAAAGCTGCACTGTGGCTCGG
i papAnu2.chr7                  I 9 C 0
e chlSab2.chr29                  20302556 212 -  24206276 I
e macFas5.chr7                  106459140  97 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I

a score=3864.000000
s hg38.chr15_KI270850v1_alt         54649 9 +    430880 CCCGCTGCT
s panTro4.chr15_GL392289_random     57751 9 -    187897 CCCGCTGCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473047 9 -  99152023 CCCACTGCT
i ponAbe2.chr15                 C 0 C 0
s papAnu2.chr7                  108949771 9 - 162156779 CCAGTTGCT
i papAnu2.chr7                  C 0 I 29
e chlSab2.chr29                  20302556 212 -  24206276 I
e macFas5.chr7                  106459140 97 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I
e nomLeu3.chr6                   22731823 38 - 121039945 I

a score=6628.000000
s hg38.chr15_KI270850v1_alt         54658 26 +    430880 CGTACAGGGCTTCCCACCccagctcc
s panTro4.chr15_GL392289_random     57760 26 -    187897 CGTAGAGGGCTTCCCACCCCAGCTCC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473056 26 -  99152023 TGTGGAGGGCTTCCCACCCCAGCTCC
i ponAbe2.chr15                 C 0 C 0
e chlSab2.chr29                  20302556 212 -  24206276 I
e papAnu2.chr7                  108949780 29 - 162156779 I
e macFas5.chr7                  106459140 97 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I
e nomLeu3.chr6                   22731823 38 - 121039945 I

a score=51051.000000
s hg38.chr15_KI270850v1_alt         54684 213 +    430880 agcatcctctccagctcccgcagcctctccagctcccgcagcctctccagctcccgcAGAGTCTCCTGCTGCCACAGCCTCTCATCCTGTTGCCGAAGCCTCTCCTGCTCCAGGAGCTCCTCCACCTCGTCCAGCAGCCTCTCCCTCTCCAGCAGCCTCTCCTGCTCCTCCTGCCGCCT---CTCCTGTTCTAACAGCTTCTCCACCTCTTCCAGC
s panTro4.chr15_GL392289_random     57786 195 -    187897 AGCATCCTCTCCAGCTCCCGCAGCCTCTCCAGCTCCTGCAG------------------AGTCTCCTGCTGCCACAGCCTCTCATCCTCTTGCCGAAGCCTCTCCTGCTCCAGGAGCTCCTCCACCTCGTCCAGCAGCCTCTCCCTCTCCAGCAGCCTCTCCTGCTCCTCCTGCTGCCT---CTCCTGTTCTAACAGCTTCTCCACCTCTTCCAGC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473082 155 -  99152023 AGCATCCTCTCCAGCTCCCGCAG------------------------------------AGTCTCCTGCTGCCAC---------------------AGCCTCTCCGGTTCCAGCAGTTCCTCCA-CTGGTCCAGCAGCCTCTCCCTCTCCAGCAGCCTCTCCTCCTCCTCCTGCCACCT---CTCCTGTTCCAACAGCTTCTCTACCTGCTCCAGC
i ponAbe2.chr15                 C 0 C 0
s papAnu2.chr7                  108949809 168 - 162156779 AGCCTCTCCTCCTGCATTCGCAGACTCT---------------------------------TCTCCTGTTTTCGTagcctctcctccttctcccacagcctctcctcct--------gctttca-------tagcctctcctcctgcttttgcagcctctcctcctccttttgcagcctctcctcctgctttcgtagcctctcctccttctcccac
i papAnu2.chr7                  I 29 C 0
e chlSab2.chr29                  20302556 212 -  24206276 I
e macFas5.chr7                  106459140  97 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I
e nomLeu3.chr6                   22731823  38 - 121039945 I

a score=9625.000000
s hg38.chr15_KI270850v1_alt         54897 34 +    430880 AGCCTC---TCCTGCCCTGGCAGCTTCTCCTGTTCAC
s panTro4.chr15_GL392289_random     57981 31 -    187897 AGCCTC---TCCTGCCCTGGCAGCTTCT---GTTCAC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473237 34 -  99152023 AGTGTC---TCCTGCCCTGGCAGCTTCTCCTGCTCAC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22731861 37 - 121039945 AGCCTCTCTTCCTGCTTTCGCAGCGTCCCCTCCTTTC
i nomLeu3.chr6                  I 38 C 0
s papAnu2.chr7                  108949977 19 - 162156779 agcctc---tcctcct------gctttt---------
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20302556 212 -  24206276 I
e macFas5.chr7                  106459140 97 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I

a score=108543.000000
s hg38.chr15_KI270850v1_alt         54931 378 +    430880 ACAGCCTCTCCTCCTGTTCACATAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGTAGCCTC---TCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCAT
s panTro4.chr15_GL392289_random     58012 335 -    187897 ACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCAC---------------------GTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCATGTAGCCTC---TCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCAC---------------------ACAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCA-
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22731898 378 - 121039945 GCAGCCTCCCCTCCTTCTTTCGCAGCCTCTCCTCCTCCTTTCGCAGCCTCTCCTCCTCCTTTAGCAGCCTCCCCTCCTCCTTTCGCAGCCTCCCCTCCTGCTTTCGCAGCCTCTCCTCCTCCTTTTGCAGCCTCCCCTCCTCCTTTCGCAGCCTCCCCTCCTGCTTTCGCAGCGTCCCCTCCTCCTTTTGCAGCCTCCCCTTCTCCTTTCGCAGCCTCTCCTCCTCCTTTCGCAGCCTCCCCTCCTGCTTTCGCAGCCTC---TCCTCCTCCTTTCGCAGCCTCCCCTCCTCCTTTTGCAGCCACCCCTCCTGCTTTCGCAGCCTCTGCTCCTGCTTTTGCAGCCTGTCACCCTTCTCCTGTAGCATCTCCTGCTGCTCCT
i nomLeu3.chr6                  C 0 I 42
s papAnu2.chr7                  108949996 333 - 162156779 gtagtctctcctcctgctttcgcagcctctcctcctgcttttgtagcctctcctccttctcccacagtctctcctcctgctttcatagcctctcctccttctcccacagcctctcctcctcctttt---------------------gcagcctctcctcctgctttcGCAGCCTGTCACCCTGCTCCCCCAGCCTCTTCTGCTGCTCCCGAAGCATCTCCTTTTGCTCACACAGTCT---CTCCTGCTCCTGCAgcctcctttcctcctgctcgtggatcttctcctcctgcttttggagcctctcctgctgctctt---------------------ggagcct-tcctcctcctcctggagtctctccttttgctc--
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20302556 212 -  24206276 I
e macFas5.chr7                  106459140  97 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I
e ponAbe2.chr15                  17473271   0 -  99152023 C

a score=816.000000
s hg38.chr15_KI270850v1_alt         55309 9 +    430880 GTAGCCTCT
s ponAbe2.chr15                  17473271 9 -  99152023 GTGGCGTCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22732318 9 - 121039945 GCATCCGCT
i nomLeu3.chr6                  I 42 C 0
e chlSab2.chr29                  20302556 212 -  24206276 I
e papAnu2.chr7                  108950329 0 - 162156779 C
e macFas5.chr7                  106459140 97 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I
e panTro4.chr15_GL392289_random     58347 0 -    187897 C

a score=34840.000000
s hg38.chr15_KI270850v1_alt         55318 61 +    430880 CCTCCTGTTCACGTAGCCTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTT
s panTro4.chr15_GL392289_random     58347 50 -    187897 -----------CGTAGCCTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473280 61 -  99152023 CCTCCTGTTCATGTAGCCTCTCCTCCTGTCTTCTGTTCAGGAGACTCAACATCTGATTATT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22732327 61 - 121039945 CCTCCTGCTCTCGGAGCCTCTGCTTTTGTTCCTTGCTCTGGAGACTCAAGGCCTGGTTGTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106459237 58 - 171882078 CTTTCCGCTCCTGCGGCCTCTAC---TGCTCCCGGTTCAGGCGACTCAAGCCCTCATTGGC
i macFas5.chr7                  I 97 C 0
s papAnu2.chr7                  108950329 30 - 162156779 -------------------------------cttgctcAGGAGACTCAAGGCCTGATTGTT
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20302556 212 -  24206276 I
e rheMac3.chr7                  112830831 3700 - 170124641 I

a score=236170.000000
s hg38.chr15_KI270850v1_alt         55379 161 +    430880 TTCCACCTCAGCCTGGAGCTGTCTTCCCACACTCTCTAGCTCCTTCCTTAGGTGGTTGGTCTCATCTTGTA---GCTGCTCCACCTTAGATGGCCCTGCTGGGGGCTCTGGGGCCAGGGGTTCAGCTGAGAAAGCAAGCAGAGAATAAGGGCCTCTGGATTCTC
s panTro4.chr15_GL392289_random     58397 161 -    187897 TTCCACCTCAGCCTGGAGCTGTCTTCCCACACTCTCTAGCTCCTTCCTTAGGTGGTTGGTCTCATCTTGTA---GCTGCTCCACCTTAGATGGCCCTGCTGGGGGCTCTGGGGCCAGGGGTTCAGCTGAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCTC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473341 160 -  99152023 TTCCACCTCAGCCTGGAGCTCTCTTTCCACACTCTCCAGCTCCTTCCTTAGGTGGTTGGTCTCATCTTGTA---GCTGCTCCATCTCAGAGGGCCCTGCTGGGGTCTCCGGGG-CAAGGGTTCAGCTGAGAAAGGAAGCAGACAGTAAGGGCCTCTGGATTCtt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22732388 161 - 121039945 TTCCACCTGGGATTGGAGCTTTCCCTCCAGTACCTCCACTTCCTTCCTCAGCTGTTTGGCCTCATCTTGTA---GCTGCTCCAACTCAGAGGTCCCTGCTGGGGGTGCCAGGGACTGGGGCTCAGCTGAGAAATGAAGCAGACAATAAGGGCCTCTGGATTCCC
i nomLeu3.chr6                  C 0 I 20
s macFas5.chr7                  106459295 164 - 171882078 TTCCACCTGGGCTTGGAGCTGTCCTGCCAGACTCTCCAGCTCCTTTCACAGGTGCTTGACCTCAGCTTATAGCTGCTGCTCCACCTCTGAGGGTCCTGCTGGGGGCTCCAGGTGTAGGGGTTCAGCTGAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCTC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108950359 161 - 162156779 TTCCACCTGGGATTGGAGCTTTCCCTCCAGACTTTCCACCTCCTTCCTCAGGTGTTTGGCCTCATCTTGTA---GCTGCTCCACCTCAGATGTCCCTGCTGGGGGTGCCGAGGATGGGGGCTCAGCTGAGAAATGAAGCAGACAATAAGGGGCTCTGGAttccc
i papAnu2.chr7                  C 0 I 18
s chlSab2.chr29                  20302768 164 -  24206276 TTCCACCTGGGCTTGGAGCTGTCCTGCCAGACTCTCCAGCTCCTTTCACAGGTGCTTGACCTCAGCTTATAGCTGCTGCTCCACCTCTGAGGGTCCTGCTGGGGGCTCCAGGTGTAGGGGTTCAGCTGAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCTC
i chlSab2.chr29                 I 212 C 0
e rheMac3.chr7                  112830831 3700 - 170124641 I

a score=2556.000000
s hg38.chr15_KI270850v1_alt         55540 10 +    430880 aaaaaaaaaa
s panTro4.chr15_GL392289_random     58558 10 -    187897 AAAAAAAAAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473501 10 -  99152023 aaaaaaaaaa
i ponAbe2.chr15                 C 0 C 0
s papAnu2.chr7                  108950538  2 - 162156779 --------AA
i papAnu2.chr7                  I 18 C 0
e chlSab2.chr29                  20302932  0 -  24206276 C
e macFas5.chr7                  106459459  0 - 171882078 C
e rheMac3.chr7                  112830831 3700 - 170124641 I
e nomLeu3.chr6                   22732549 20 - 121039945 I

a score=714403.000000
s hg38.chr15_KI270850v1_alt         55550 469 +    430880 aaaaaaaaTCCTCCCTTTGGTGCACAGCTCCTCCTCTCAGGCTTCCCAAACTTGGCCTCACTGCTAATGACTCCTCACACCCGGATGGTAGACAATCTTCCAAGTCACTTTCAGATAGAGAGCACTGTGGGTGGCTGACAATGGGCACTCctccctctttactgatggggacactgaggctcatggagatgacaagacttgtccTCCCCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCATTCTAAGTCACCCCCACAGCCCTCTAATGCCAGTCCAGCTGCCAGGTCATGCCAGCCCCATCTTACCCGTCTGGTTTTTGAGTTTGAACAAGCTCCTCCCAAGCTTCTGTACCAGATGTATCTCATGCTTCTTCTCCTCCTTAGATGTGCGAACCTGCCCAAAGCAAAGGGGGAAAAGGGCCCTGGA-GGGAGGGGCTGGT
s panTro4.chr15_GL392289_random     58568 467 -    187897 AAAAAA--TCCTCCCTTCGGTGCACAGCTCCTCCTCTCAGGCTTCCCAAACTTGGCCTCACTGCTAATGACTCCTCACACCCGGATGGTAGCCAATCTTCCAAGTCACTTTCAGATAGAGAGCACTGTGGGTGGCGGACAATGGGCACTCctccctctttactgatggggacactgaggctcatggagatgacaagacttgtccTCCCCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCATTCTAAGTCACCCCCACAGCCCTCTAATGCCAGTCCTGCTGCCAGGTCATGCCAGCCCCATCTTACCCGTCTGCTTTTTGAATTTGAACAAGCTCCTCCCAAGCTTCTGTACCCGATGTGTCTTATGCTTCTTCTCCTCCTTAGATGTGCGAACCTGCCCAAAGCAAAGGGGGAAAAGGGCCCTGGA-GGGAGGGGCTGGT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473511 451 -  99152023 aaaaaaaatCCTTCCTTTAGTGCACAGCTCCTCCTCTCAGGCTTCCCAAACTTGGCCTCACTGCTAATGATTCCTGGCACCCAGATGGTAACCAATCTTCCAAGTCACTTTCACATAGAGAGCACTGTGGGTGGCTGACAATGGGCACTCctccctctttactgatggggacactgaggctcatggagatgacaagacttgccATCTCCTGGCACAGACCTCTTTCCCTCTGCCT---------------CACCCACCTCCCTGGGGCATTCTAAGTCACCCCCACAGCCCTCTGATGCCAGTCCTGCTCCCAGGTCACGTCAGCCCCATCTTACCCATCTGGTTTTTGAGTTTGAACAAGCTCCTCCCAAGCTTCTGTACCCAATGTATCTCATG---CTTCTCCTCCTTCAATGTGCCAACCTGCCCAAAGCACAGCAGGGAAAGGGCCCTAGA-GAGAGGGGCTGGT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22732569 461 - 121039945 AAAAAAAACCCTCCTCTTGATGCACAG---CTCCTCTCAGGCTTCCCAAACTTGGCCTCACTGCTAATGATTCCTTGCACCC-GATGGTAGCCAAT-TTCCAAGCCACTTTCACATAGAGAGCACTGTGGGTGGCTGACAACGGACACCCCTCCCTCTTTGCTGATGGGGACCCTGAGGCT-ATGGAGATGACAAAACTTGCCGTCTTCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTACATCCACCCACCTCCCTGGGGCATTCTAAGCCACCCCCACAGACCTCTGATGCCACTCCTGCTCCCAGGTCACACCAGCCCCATCTTACCCATCTGGTTTTGGAGTTGGGACAAGCTCCTCTCCAGCTCCTCTATCCGATGTATGTCACGTTTCTTCTCCTCCTTCAATGTAAGAGTCTGCCCAAAGCACAG--GGGAAAGGGCCCTGGA-GAGAGGGGCTGGT
i nomLeu3.chr6                  I 20 C 0
s macFas5.chr7                  106459459 462 - 171882078 --AAAAAACCCTCCTCTTGGTGCACAG---CTCCTCTCAGGCTCTGCAAACTTGGCCTCCCTGCTAATGATTCCTTGTACCC-GATGGTAGCCTATCTTCCAAGCCCCTTTCAGATAGAGAGCACTGTGGGT-GCTGACAATCGGCACTCctccctctttgttgatggggacactgaggctcatggagatgacaagacttgccATCTCCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATGCACCCACCTCCCTGGGGCATTCTAAGCGACCCCCACAGCCCTCCGATGCCAGTCCTGCTTTGAGGTCACCCCAGCCCCAGCTCACCCATCTGGTTCTTCAGTTTGGTCAAGCTTGTCTCCAGCTCCTGTACCTGATGCAGGTCATGCTTCTTCTCCTCCTTCAATGTGCAAACCTGCCCAAAGCACAG-GGGGAAAGGGCCCTGGAGAAGAGGGGCTGGT
i macFas5.chr7                  C 0 I 3474
s papAnu2.chr7                  108950540 459 - 162156779 AGAAAAAGCCCTCCTTTTGATG--CAG---CTCCTCTCAGGCTTCCCAAACTTGGCCTCATTGCTAATGATTCCTTGCACCG-GATGGTAGCCAAT-TTCCAAG-CCATGTCAGATAGAGAGCACTGTGGGTGGCTGACAATGGGCACTCCTCTCTCTTTGCTGATGGGGACCCTGAGGCTCATGGAGATGACAAGGCTTGCTGGCTGATGACACAGACCACTTTCCTGCTGCCTCAAAgcccttccatccacccacctccctgggGCATTCTAAGCCA-CCCCACAGCCCTCTGATGCCAGTCCTGCTCCCAGGTCACACCAGCCCCATCTTACCCATCTGGTGTTTGAGTTCAGACAAGCTCCTCTCCAGCTCCTGTATCCGATATATGTCAcgtttcttctcctccttcaatGTGCGAGCCTGCCCAAAGTACAG-GGGGAAAGGGCCCTGGA-AAGAGGGGCTGGT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20302932 462 -  24206276 --AAAAAACCCTCCTCTTGGTGCACAG---CTCCTCTCAGGCTCTGCAAACTTGGCCTCCCTGCTAATGATTCCTTGTACCC-GATGGTAGCCAATCTTCCAAGCCCCTTTCAGATAGAGAGCACTGTGGGTGGCTGACAATCGGCACTCctccctctttgttgatagggacactgaggctcatggagatgacaagacttgccgtctcctggcaCAGACCTCTTTCCCTCTGCCTCAAAGTCCTTCCATGTACCCACCTCCCTGGGGCACTCTAAGCGACCCCCACAGCCCTCCGATGCCAGTCCTGCTTTGAGGTCACCCCAGCCCCAGCTCACCCATCTGGTTCTTCAGTTTGGCCAAGCTTGTCTCCAGCTCCTGTACCTGATGCAGGTCATGCTTCTTCTCCTCCTTCAATGTGCAAACCTGCCCAAAGCACAG-GGGGAAAGGGCCCTGGA-GAGAGGGGCTGGT
i chlSab2.chr29                 C 0 C 0
e rheMac3.chr7                  112830831 3700 - 170124641 I

a score=1500.000000
s hg38.chr15_KI270850v1_alt         56019 1 +    430880 G
s panTro4.chr15_GL392289_random     59035 1 -    187897 G
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473962 1 -  99152023 G
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22733030 1 - 121039945 G
i nomLeu3.chr6                  C 0 I 2442
s papAnu2.chr7                  108950999 1 - 162156779 G
i papAnu2.chr7                  C 0 I 2477
s chlSab2.chr29                  20303394 1 -  24206276 G
i chlSab2.chr29                 C 0 I 3929
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I

a score=5252.000000
s hg38.chr15_KI270850v1_alt         56020 7 +    430880 AACGTCC
s panTro4.chr15_GL392289_random     59036 7 -    187897 AACCTCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473963 7 -  99152023 AACCTCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22735473 7 - 121039945 AACCTCT
i nomLeu3.chr6                  I 2442 C 0
s papAnu2.chr7                  108953477 7 - 162156779 AACCTCT
i papAnu2.chr7                  I 2477 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112830831 3700 - 170124641 I

a score=635117.000000
s hg38.chr15_KI270850v1_alt         56027 558 +    430880 AGAGACAGAGTTTGAGAAAGGCCCACCCCCCTTCTGCCAGTTTGTGATTTAGAAACGTGcattcattcaacaaacatttactgagcatgtacaggccaggtacagttcttcatagcagagatataaaacagcaaaggacagacaggagcccttggccctgaggtttccattctaggggCCTTTAaatctctgactttcagagctaaccaagacctttgatactctctacctcctccagaaacacgagcataaagaggagagatggcttgtccagactcaaaaagcaaattagggactgaggcagggcagaaatat-ggacccctgacaaccagtcAGGCTAGTGCTTCCCAGAGAGGTGACAACCCCAGGGCATGTGTGGCAAGGACTAGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTG-CAGAAGACCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTG-CCCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCCTAGCTCCTTTCTTCAGGGCCCCAAGAGGAAA
s panTro4.chr15_GL392289_random     59043 558 -    187897 AGAGACAGAGTTTGAGAAAGGCCCACCCCCCTTCTGCCAGTTTGTGATTTGGAAACGTGcattcattcaacaaacatttactgagcatgtacaggccaggtacagttcttcatagcagagatataaaacagcaaaggacagacaggagcccttggccctgaggtttccattctaggggCCTTTAAATCTCTgactttcagagctaaccgagacctttgatactctctaccttctccagaaacacgagcataaagaggagagatggcttgtccagactcaaaaagcaaattagggactgaggcagggcagaaatat-ggacccctgacaaccagtcAGGCTAGTGCTTCCCGGAGAGGTGACAACCCCAGGGCATGTGTGGCAAGGACTAGAGCAGAGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTG-CAGAAGAGCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTG-CCCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCCTAGCCCCTTTCTTCAGGGCCCCAAGAGGAAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17473970 545 -  99152023 AGAGACAGAGTTTGAGAAAGGCCCACCCCCCTTCTGCCAGCTTGTGATTTAGAAAGGTGcattcattcaacaaacatttactgagcac-----------gtacagttcttcatagcagagatataagacagcaaaggacagacaggagcccttggccctgaggtttccattctaggggCCTTTAaatctcatactgtcagagctaacagaga-ctttgatactctctacctcctccagaaacatgaccctaaggaggagagatggcttgtccaggctcaaaaagcaaattagggactgaggcacggcagaaatac-aggcccctgacaaccagtcAGGCTAGTGCTTCCCTGAGAGGCGACAACCCCAGGGCATGTGTGGCAAGGATAAGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTG-CAGAAGAGCCATGCTGCATGTTCTGTGGTCTGGGGTCCCTCCAGGTGAGACCTGGGTGCCCCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCCTAGCCC--TTCTTCAGGGCCCCGAGGGGAAA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22735480 551 - 121039945 AGAGACGGAGACTCAGAAAGACCCA---CCCTTCTGCCAGCTTGTGATTTAGAAAGGTGCCttcattccacaaacagttactgagcacatacaggacaattatggttcttcacagc--agatataggatggaaaaggacagacaggagcccttggccctcaggtttccattctagaggCCTTTAaatctcggactttcagagctaacagagacctttgatg--ctctacctcctccagaaacacgagcccaaggaggagaggtggcttgtccagactcaaagaggaaattagggacggagtcagggcagaaatatggggcccctggcaaccagtcAGGCTAGTGCTTCCCTGAGAGGTGACAACCCCAGGGCATGTGTGGCAATGATTGGAGT-GGGGTGTCTGGAGAAGAGAGAGTTGGCAAAGAGGGCAGCGACAGAAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCAGGTGAGGCCTGGGTGCTCCAGCTCCCCATGTGTCCTTGGCATCAGGGGGCCC-AACTCCTTTCTTCAGGGCCCCAAGGGG-AA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112834531 552 - 170124641 AGAGACGGAGTCTGAGAAAGGCCCA---CCCTTCTGCCAGCTTGTGATTGAGAAAGGTGcgttcattcaacaaacatttactgagcacgtacaagccaggtacagttcttcacagc--agatatagaatggaaaaggacagacaggagcccttggccctcaggtttccattctaagggCCTTTAaatctcagactttcagagctaacagaga-ttttgatg--ctctacctcctctggaaacaggagcccaaggaggaaaggtggcttgtccagactcaaagagcaaattagggactgagtcatggcagaaatacagcacccttgacAAACCATCAGGCTAGTGCTTCCCTGAGAGGTGACAACCCCAGGGCGTGTGTGGCAAGGACTGGAGCAGGGGTGTCTGGAGAAGAGAGAGTCGGCAAAGAGGGCAGTGACAGAAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCTGGTGAGGCCTGGGTGCTCCAGCTCCCCATTTGCCCTTGGCCTCAGGGGCCCC-AGCCCCTTTCTTCAGAGCCCCAAGGGGAAA
i rheMac3.chr7                  I 3700 M 78
s papAnu2.chr7                  108953484 551 - 162156779 AGAGACGGAGTCTGAGAAAGGCCCA---CCCTTCTGCCAGCTTGTGATTGAGAAAGGTgcgttcattcaacaaacatttactgagcacgtACAAGCCAGGTACAGTTCTTCACAGC--AGATATAGGACAGAAAAGAACAGACAGGAGCCCTTGGCCCTGAGGTTTCCATTCTAAGGGCCATTAAATCTCAGACTTTCAGAGCTAACAGAGA-TTTTGATG--CTCTACCTCCTCTGGAAACAGGAGCCCAAGGAGGAGAGGTGGCTTGTCCAGACTCAAAGAGCAAATTAGGGACTGAGTCATGGTAGAAATACAGGACCCCTGACAAACCATCAGGCTAGTGCCTCCCTGAGAGGAGAAAACCTCAGGGTGTGTGTGGCAAGGACTGGAGCAGGGGTGTCTGGAGAAGAGAGAGTCGGCAAAGAGGGCAGTGACAGAAAAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCAGGTGAGGCCTGGGTGCTCCAGCTCCCCATTTGCCCTTGGCACCAGGGGCCCC--GACCCTTTCTTCAGAGCCCCAAGGGGAAA
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I

a score=155264.000000
s hg38.chr15_KI270850v1_alt         56585 212 +    430880 CTGGAGTCCAGGATTGACCAGCTGTAATCAGGGGACCCCACTGGACTCTTACCAGTGAATTGATGTTTTCAGTGAGTTGACTGATTATTGCGGAGCTTGAATCCAGGGCCACTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGAGAGAAGGAGTTGGAGGAAGATTGTGGCGAGGGGTAGAGAGAATAATCATTAGGGCTGGTGGGG
s panTro4.chr15_GL392289_random     59601 212 -    187897 CTGGAGTCCGGGATTGACCAGCTGTAATCAGGGGACCCCACTGGACTCTTACCGGTGAATTGATGTTTTCAGTGAGTTGACTGATTATTGCGGAGCTTGAATCCAGGGCCACTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGAGAGAAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGAGAGAATAATCATTAGGGCTGGTGGGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17474515 212 -  99152023 CTGGAGTCCAGGATTGACAGGCTGGAATCAAGGGACCCCACTGGACTCTTACCAGTGAACTGATGTTTTCACTGAGTTGACTGATTATTGCGGAGCTTGAATCCAGGGCCACTGCTAGTTCTTAGTACTGGCTCTGAGGTGCATGCAGAAAGGAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGAGAGAACAATCATTAGGGCTGGTGGGG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22736031 212 - 121039945 CTAAAGCCCAGGATTGGCAGCGTGGAATCACGGGACCCCACTGGACTCTTATCAATGATTCTATGTTTTCATTTAGTTCATTGATTGTTGTGTAGCTTGACTGTAGGGCTACTTCCAGTTCTTGGTACCGGCTCTGAGACACATGCAGAGAGGAGGAGTTGGAGAAGGATTGTGGGGAGAGGTAAAGAGAACCATCATTAGGGCTGGGGTGT
i nomLeu3.chr6                  C 0 C 0
s papAnu2.chr7                  108954035 212 - 162156779 GTAAAGCTCAGGATTGGCAGCGTGGAATCACAGGACCCCACTGGACTCTTACCAATGATTCTATGTTTTCACAGAGTTGATTGATTGTTGCAGAGCTTGAGTCTAGGGCTACTTTCAGTTCTTGGTTCCAGCTCTGAGGCGCATGCAGAGAGGAGGAGTTGGAGGAGGATTGTGGGAAGAGGTAGAGAGAACAATCATTagggctggggtgt
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112835083  78 - 170124641 M

a score=156568.000000
s hg38.chr15_KI270850v1_alt         56797 130 +    430880 GTGTGTG------GGCTGCCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTCGGCCCAGGGCCTCTTACCTCCAGATCCTGCAGGGTAGTAGA
s panTro4.chr15_GL392289_random     59813 130 -    187897 GTGTGTG------GGCTGCCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCATCTCGGCCCAGGGCCTCTGACCTCCAGATCCTCCAGGGTAGCAGA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17474727 130 -  99152023 GGGTGTG------GGCTGTCTCAGCTGGCAGAGGGGCAACAAGCTCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTCGGCCCAGGGCCTCTTACCTCCAGATCCTTCAGGGTAGCAGA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22736243 126 - 121039945 GTGTGGGCTGTCAGGCTGTCTCAGCTGGCAG----------AGCCCCTGCTGTGAGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTTGGCCCAAGGCCTCTTACCTCCAGATCCTTCAGGGTAACAGA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112835163 130 - 170124641 GTGTGTG------GGCTGTCTCAGCTGGCAGAGGGGCACCCAGCCCCCACTGTGAGAGGAGGCTGGAGGGCTGGCCTGCAGGGTCACTGCACGTCAGCCCAGGGCCTCTTACTTCCAGATCCTTCAGGGTAGCAGA
i rheMac3.chr7                  M 78 I 1333
s papAnu2.chr7                  108954247 130 - 162156779 gtgtgtg------ggctgTCTCAACTGGCAGAGGGGCACCCAGCCCCCGCTGTGAGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACGTCAGCCCAGGGCCTCTTACTTCCAGATCCTTCAGAGTAGTAGA
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I

a score=2509.000000
s hg38.chr15_KI270850v1_alt         56927 4 +    430880 GGAT
s panTro4.chr15_GL392289_random     59943 4 -    187897 GGAT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17474857 4 -  99152023 TGAT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22736369 4 - 121039945 TGAT
i nomLeu3.chr6                  C 0 I 1278
s papAnu2.chr7                  108954377 4 - 162156779 TGAT
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112835293 1333 - 170124641 I

a score=1746.000000
s hg38.chr15_KI270850v1_alt         56931 3 +    430880 GCA
s panTro4.chr15_GL392289_random     59947 3 -    187897 GCA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17474861 3 -  99152023 GCA
i ponAbe2.chr15                 C 0 C 0
s papAnu2.chr7                  108954381 3 - 162156779 GCA
i papAnu2.chr7                  C 0 I 1311
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112835293 1333 - 170124641 I
e nomLeu3.chr6                   22736373 1278 - 121039945 I

a score=50025.000000
s hg38.chr15_KI270850v1_alt         56934 191 +    430880 CGGCCCTCCCCGTAGATACCTGTTGCTGACTGCAAGAGATGAGAGTGCACATGGAGATGTTCTGTCCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTTCCCCCATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTTCCCCATAACTCCTTTGTGCCAACTTCTCTCGTGGTTCTTA
s panTro4.chr15_GL392289_random     59950 191 -    187897 CGGCCCTCCCCGTAGATACCTGTTGCTGACTGCAAGAGATGAGAGTGCACATGGAGATGTTCTGTCCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCATCCCCCATCAACTGGCAAAAGCTTCTTTTCTGTCTATCTTGGACCCTTTTTCCCATAACTCGTTTGTGCCAACTTCTCTCGTGGTTCTTA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17474864 190 -  99152023 GGGCCCTCCCCGTAGATACCTGTTGCTCACTCCAAGAGATGAGAGTGCACATGGAGATGTTCTGTCCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTT-CCCCATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCATAACTCCTTTGTGCCAGCTTCTCTCATGGTTCTTA
i ponAbe2.chr15                 C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e papAnu2.chr7                  108954384 1311 - 162156779 I
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112835293 1333 - 170124641 I
e nomLeu3.chr6                   22736373 1278 - 121039945 I

a score=1146.000000
s hg38.chr15_KI270850v1_alt         57125 2 +    430880 TC
s panTro4.chr15_GL392289_random     60141 2 -    187897 TC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17475054 2 -  99152023 TC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22737651 2 - 121039945 tc
i nomLeu3.chr6                  I 1278 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e papAnu2.chr7                  108954384 1311 - 162156779 I
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112835293 1333 - 170124641 I

a score=16673.000000
s hg38.chr15_KI270850v1_alt         57127 33 +    430880 TCCCCACCATCCCACCCTGGGGCCCTTTCAGTG
s panTro4.chr15_GL392289_random     60143 33 -    187897 TCCCCACCATCCCACCCTGGGGCCCTTTCAGTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17475056 32 -  99152023 TCACCACCATCCCA-CCTGGGGCCCTTTCAGTG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22737653 30 - 121039945 tcctcaaca---caccctgGGCCCCCTTCAGTG
i nomLeu3.chr6                  C 0 C 0
s papAnu2.chr7                  108955695 30 - 162156779 TCCTCACCA---CACACTGGCCCTCCTTCTGTA
i papAnu2.chr7                  I 1311 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112835293 1333 - 170124641 I

a score=766684.000000
s hg38.chr15_KI270850v1_alt         57160 714 +    430880 ACTCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATCAaacagcaacgaccatttcctcagtgtcctgggtgtttgcagcaggccatgtactaaggattcacataaa---agcaacaataacgaatctcatttaaacttcacaaatggaagt-caaaaaataccacctctattatacagatgtgaaaagagaggcccaaagacctcaagcaacttgccctaaatcatatgctaatcaatCCCTAATCAATTCTTAGCAGACGGAGAGGCAGGATTCAAATCCAGAATTCTTAACCAGTACCCAACAGTCCATCTACAATCTTAACAATTACCCTCTACTGCCCCTTGGGCCCCCTGTCCCCAGGAGCCTGGCCCGCCGAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCATTGACTTTCTTTTTCCTGTTAGCTCCTGCTGGAATGCCAGGGCTCTTCCTCTGCCAATATGCTTTTAACTGTGGGAAAGAAGAGCAGTAACACTCATGAGaatgatcagcccctacagccacatcctcctttacagttttgacaaaatacccttatataccatctgatgtaatgccaccaacaaccgtacaaggtGTTGTCACAATCA----GTGACTGAGAGGGATTCATATCATGGATA
s panTro4.chr15_GL392289_random     60176 718 -    187897 ACTCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATCAaacagcaacgaccatttcctcggtgtcctgggtgtttgcagcaggccatgtactaaggattcacataaa---agcaacaataacgaatctcatttaaacttcacaaatggaagt-caaaaaataccacctctattatacagatgtgaaaagagaggcccaaagacctcaagcaacttgccctaaatcatatgctaatcaatcccaaatcaatccttagcagacggagaggcaggattcaaatccagaattcttaaccagtaCCCAACAGTCCATCTACAATCTTAACAATTACCCTCTACTGCCCCTTGGACCCCCTGTCCCTAGGACCCTGGCCCGCCGAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCATTGATTTTCTTTTTCCTGTTAGCTCCTGCTGGAATGCCAGGGCTCTTCCTCTGCCAATATGCTTTTAACTGTGGGGAAGAAGAGCAGTAACACTCATGAGaatgatcagcccctacggccacatcctcctttacagttttgacaaaatacccttatataccatctgatgtaatgccaccaacaactgtacaaggtGTTGTCACAATCACTTAGTGACTGAGAGGGATTGATATCATGGATA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17475088 718 -  99152023 ACT-CTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGTCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATCAAACAGCAATGaccatttccttggtgtcctgggtgtttgcagcaggccatgtactaaggattcacataaa---ggcaacaataacgaatctcatttaaacttcacaaatggaagtaaaaaaaataccacctctattatacagatgtgaaaagagaggcccaaagacctcaagcaacttgccctaaatcatatcctaatcaatccctaatcaatcctcagcagatggagaggcaggattcaagcccagaattcttaaccagtaccgaacagtccatccacaatcttaacaattaccctctactgCCCCTTGGGCCTCCTGTCCCCAGGAGCCTGGCCAACCAAAACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGTTGTGTCCGGGCTACTGCCATTGATTTTCTTTTTCCTGTTAGCTCCTGCTGGAATGCCAGGGCTCTTCCTGTGCCAATATTCTTTTAACTGTGGGAAAAAAGAGCAGTAACACTCATGTGAACTATCAGCCCCTATAGCCACATCCTCctttacagttttgacaaaatactcttatacaccatctgatttaatgccaccagcagctgcacaaggtGTTGTCACAATCACTTAGTGACTGAGAGGGATTGATCTCATGGATA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22737683 689 - 121039945 ACTCCTATAGGTACAGCCTGATGGCAAGTGGCTGTACTCATTGGCCCAGCTTCCCCTTGAGACTGGGGATCAGGAAAATCAAACAGCAATGACCATTTCCTGAGTATCCTGGGTGTTTACAGCCGGCCATGTACTAGGGATTAACATAAAAACAACAACAATAAGGAatctcatttaaacttcacaaatggaagt-caaacaatactcccccgattttacagatgtgaaaagagaggcccaaagagctcaagaagtttgccgtaaatca---------------------gatccctagaagagggagaggcaggattcaaacccagaattcttaatcagtacccagcaatcc-----------taacaattaccctccactgccccTTGGGCCCCCTGTCCCCAGGAGCCAGGCCAGCCAAGACTCACATCCCCAGGTGAGTGCCAACCAAAACAAGTGGTTGTCTCAGGGCTACTGCCAGGTTTTTTCTTTTTCATCTTTGCTCGTGCCGGAACACCAGGGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTAATACTCATGAGAACTTCCAGCCTCTACAGCCACATCCTCCTTTATAGTTTTTGCAAAATACTCTTATACACCATCTGATTTAATGCCACCAACAACTGTACAAGGTGTTGTCACGATCACTTAGTGACTGAGAGGGATGGATATTATGGCTA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112836626 679 - 170124641 ACTCCTAAAGGGACAGTCTGATGGCAAGTGGCTGTACACATTGTCCCAGCTTCCCCTTGAGAATGGGGATCAGGAAAATCAAATAGCAATGACCATTTCATGGGCATCCTGAGTGTTTACAGCAGACCATGTACTGGGGATTAACATAAAAACAACAACAATAAGGAatttcatttaaacttcacaaatggaagt-caaacaatgctacctctgttttacagatgtgaaaacagaggcccaaaatgctcaagcaatttgccgtaaatca---------------------gaagcctactcgatggagaggcaggattcaatcccagAATCCTT--------ACCAGCAATCT-----------CAACAATTACCCTCTACTGCCCCTTGGGCCCCCTGTCCCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGCTACTGCCAGTATTTTTCTTTTTCGTCTTCACTCCTGCCGGAACACCAGGGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTCATACTCATGAGGACTACCAGCCCCTACGGCCATGT-CACCTTTACAGTTTTT-CAAAATACTCTTATACACCATCTGACTTAATGCCACCAACAACTGTACAAGGCGTTGTCACAGTCACTTAGTGACTGAGAGGAATGTATATTATGGCTT
i rheMac3.chr7                  I 1333 I 16
s papAnu2.chr7                  108955725 689 - 162156779 ACTCCTAAAGGGACAGTCTGATGGCAAGTGGCTGTACACATTGTCCCAGCTTCCCCTTGAGAATGGGGATCAGGAAAATCAAACAGCAATGACAATTTCATGGGCATCCTGAGTGTTTACAGCAGACCATGTACTGGGgattaacataaaaacaacaacaataaggAATTTCATTTAAACTTCACAAATGGAAGT-CAAACAATGCtacctctgttttacagatgtgaaaacagaGGCCCAAAATGCTCAAGCAATTTGCCGTAAATCA---------------------GATCCCTAGCAGATGGAGAGGCAGGATTCAATCCCAGAATCCTTAACCAGTAACCAGCAATCT-----------CAACAATTATCCCCTACTGCCCCTTGGGCCCCCTGTCCCCAGGAGCCTGGTCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGCTACcgccagtttttttcttttttgtcttctctccTGCCAGAACACCAGGGCTGTTCCTCTGATGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTAATACTCATGAGAACTACCAGCCCCTACAGCTACATCCCCCTTTACAGTTTTTGCAAAATAGTCTTTTATACCATCTGATTTAATGCCACCAACAACTGTACAACGCGTTGTCACAGTCACTTAGTGactgagaggaatgtatattatGGCTT
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I

a score=1458.000000
s hg38.chr15_KI270850v1_alt         57874 28 +    430880 Gaaaaaaaaaaaaaagaaagatcaaaaa
s panTro4.chr15_GL392289_random     60894 28 -    187897 GAAAAAAAAAAGAAAGAAAGATCAAaaa
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17475806 20 -  99152023 CAAAAAAAAAAAAAA--------AAaaa
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22738372 14 - 121039945 AAAAAAAAG--------------GGCGG
i nomLeu3.chr6                  C 0 C 0
s papAnu2.chr7                  108956414 17 - 162156779 -aaaaaaaGTAGTGGGGA----------
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I
e rheMac3.chr7                  112837305 16 - 170124641 I

a score=2434591.000000
s hg38.chr15_KI270850v1_alt         57902 2263 +    430880 aGGCAATACTGGAACTTAAACTCAGTCCTCTGACTCCACGCTCTGGGGTTTTGCCATGAATCAGCAGCTTCCAGGGACCAAAACCAGGGGCAGAGGTAGAAAAGCACACATTAAGCAGGCAGGAACTGTAGGCCGTGTGGTTTAGAGTCATACATCCTCACAGGTCTGCTAGCGTGAAGAAGCGTACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAGCTTTTCTATTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGCAAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCACCCCCAAGTACATTAATGCATTT----TCTCAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccgcatttatcctgtggcACTCAAAGTACCCCAGGTTGAGACGATATGAGGAAGATTCAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGGCCACTGACTGAAGGGCAGTCTGGTCCCAGAACC--------------------GTGGAGAACTCAGAAAAAAATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAAAAAA--------------------CCAAACCAAACCCATTCTCCCATTGCCACCCAGAGATACTGTGAACATTTTGAGCTCACAGGGGAAGTGTAGGCTTTTCCCACTGTCAAT--GTCTATGTTAAGGGAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCTCCACTCCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCTGGTCTTGCAGCAGTAATGACAGTTCCTAGGGGCACTGTGACATCATTGCATTCCACTCCTCCCA-GGGGA----GGGGACCACATCAGCGCGATGCCCGAGTCGCTGCTCCACGATGGGGGAGGGAAACACACGGTTTCGACCCAGGTCCTCAGAGACGCCAGCCCAAGAAGCCTAGGGAGGTCGAGCTTGGGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGTAGGGAGCCCCGGGAGTCACCAGCCCAAAGCCACCCAGGGATGACTGGTGAGGGCAGGGC-CTGGGGCTGGGGGACCCAGGTCCTGGGAGACGCAAGCCCAAAGAGCCCAGGGAGGTTGGGCTT-------------------------------------------GGGGTGGCAGGAGGTGAGAGCTGATTATGGAGCAGGGAGCCCCAGGAGTCACCTGCCCAAAGTCACCCTGGGGTGATTGGCAAGGGCAGGGACTGGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACTAGGCTTTGGTT-GGGGGAGCCCAGAGGGGCTGGGGTTGGGGGGCCCCATCTGGTATGCCTCAGGAGTGGTATGGACTCTGGCACAGGTCTTGTCATCGGAGGGGATCTGTGGCTGGGTTGGGG---GCCATGACCTGGTGTGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACATCAGCGAAATACCAGTGAGCACTGCTCAATGCCTCCAGTCACCTACCAGGCAGCTGTGCAACTGAGCCACAGGTGGCGTAACCAGGGCACCAATGGAACGCAGAATAGGGGCGTGGCCTTA-----------------------------------------------------------------------------------------------ATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGCAGCATGTCCAGAGGGACCTGTGGCATCATAAGGAAAGCTGCCCATGCAACCGCTGTCCCCGCCCACTCAGAGAAAGGGGAGGGGCC-GCCCACTCTGGGAGAGGGGAAGGGCTGGGTTTTGCTTTAAAACTTTTAAAACTGTAAAAAATAAACTTTAAAAAATATATGTGTATATACTTTATATA---TA----tgtgtgtctgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTATGCAGCTTCTGTGCAAAGTCTGTGA-TTTTGGCCTATATTTTTCATCTTCAAATGGAGTACAAGAATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCCGACTATAGTATCCGACATTCCAATAAGACAAAATAATCACAACAATTTCTCTTTTTTGGAAAAATGTTTGTCTTATTCTCCTACATTATTGTTAAGATTTCTTTTAAAAACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
s panTro4.chr15_GL392289_random     60922 2264 -    187897 aggcaatactggaacttaaactcagtcctctgactccaagctctggggttttgccatgaatcaGCAGCTGCGAGGGACCAAAACCAGGGGCAGAGGTAGAAAAGTAAACATGAAGCAGGCAGGAGCTGTAGGCCGTGTGGTTTAGAGTCACACATCCTCACAGGTCTGCTAGCGTGAAGAAGCGCACCAGTACCTCTCACACTTTCGTATCAATGTGTCCTCATGGCAGAAGGCAGCTTTTCTATTAAATCCGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGCGAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCATCCCTAAGTACATTAATGCATTT----TCTCAAGAGAAtcaagggaaaacgatgcttcagaaagatgtcccacatttatcctgtggcACTCAAAGTACCCCAGGTTGAGACGATATGAGGAAGATTCAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGGCCACTGACTGAAGGGCAGTCTGGTCCCAGAACC--------------------GTGGAGAACTCAGAAAAAAATGTGAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAAAAAA-------------------ACCAAACCAAACCCATTCTCCCATTGCCACCCAGAGATACTGTGAACATTTTGAGCTCACAGGGGAAGTGTAGGCTTTTCCCACTGTCAAT--GTCTATGTGAAGGGAGTAAGGCATCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCTCCACTCCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTACGATCAAAGGCCGGTCTTGCAGCAGTAATGACAGTTCCTAGGGGCACTGTGACATCATTGCATTCCACTCCTCCCA-GGGGA----GGGGACCACATCAGCGCGATGCCAGAGTCGCTGCTCCACGATGGGGGAGGGAAACACACGGTTTCGACCCAGGTCCCCAGAGACGCCAGCCCAAGAAGCCTAGGGAGGTCGAGCTTGGGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGTAGGGAGCCCCGGGAGTCACCAGCCCAAAGCCACCCAGGGATGACTGGTGAGGGCAGGGC-CTGGGGCTGGGGGACCCAGGTCCTGGGAGACGCAAGCCCAAAGAGCCCAGGGAGGTTGGGCTT-------------------------------------------GGGGTGGCAGGAGGTGAGGGCTGATTATGGAGCAGGGAGCCCCAGGAGTCACCTGCCCAAAGTCACCCTGGGGTGATTGGCAAGGGCAGGGACTGGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACTAGGCTTTGGTT-GGGGGAGCCCAGAGGGGCTGGGGTTGGGGGGCCCCGTCTGGTATGCCTCAGGAGTGGTATGGACTCTGGCACCGGTCTTGTCATCGGAGGGGATCTGTGGCTGGGTTGGGG---GCCATGACCTGGTGTGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACATCAGCGAAATACCAGTGAGCGCTGCTCAATGCCTCCAGTCACCTACCAGGCAGCTGTGCAACTGAGCCACAGGTGGCGTAACCAGGGCACCAATGGAACGCAGAATAGGGGCGTGGCCTTA-----------------------------------------------------------------------------------------------ATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGCAGCATGTCCAGAGGGACCTGTGGCATCATAAGGAAAGCTGCCCAGGCAACCGCTGTCCCCGCCCACTCAGAGAAAGGGGAGGGGCC-GCCCACTCTGGGAGAGGGGAAGGGCTGGGTGTTGCTTTAAAACTTTTAAAACTGTAAAAAATAAACTTTAAAAAAtatatgtgtatatactttatata---ta----tgtgtgtctgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTATGCAGCTTCTGTGCAAAGTCTGTGA-TTTTGGCCTATATTTTTCATCTTCAAATGGAGTACAAGAATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAAGGAAGCCGACTATAGTATCCAACATTCCAATAAGACAAAATAATCACAACAATTTCTCTTTTTTGGAAAAATGTTTGTCTTATTCTCCTACATTATTGTTAAGATTTCTTTTAAAAACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17475826 2359 -  99152023 aggcaatactggaacttgaactcagtcctctgactccaagctccggggttttgccatgaatcagcagctgccAGGGACCAGAACCAGGGGCAGAGGAAGAAAAGTAAACATTAAGCAGGCAGGAACTGTAGGCTGTGTGGTTTAGAGTCACACATCCTCACACGTCTGTTAGTGTGGAGAAGTGCACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAGCTTTTCTGTTAAATCTGGGAATTTATC--AAAGAGGACAAACCAAGTCTCATTTCAGAGAGAAGTCTGGTATATGCTTGGAAACCCATGTGTCTGTCATCCCTAAGTACATTAATGCTTTT----TCTCAAGAGAATCAGGGGaaaatgatgcttcagaaagatgtcccacatttatcctgtggcACTCAAAGTACCCCAGGTTGAGATGACATGAGGAAGATTCAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGGGTAAATCTCACTTCAGAGACCACTGACTGAAGGGCAGTCTGGTCCCAGAAGC--------------------GTGGAGAACTCAGAAAAAAATGTTAAAGTCTCTCTGGAAAGTAGAAGTCTGGGAGAAAA--------------------CCAAACCAAACCCATTCTCCCATTGCCACCCAGAGATACTGTCAACGTTTTGAGCTCACAGGGGACGTGTAGGCTTTCCCCACTGTCAATTAGACATTGTTAAGGGAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCCCCACTCCCCTTCCAGCCGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCCAGTCTTGCAGCAGTAATGACAGTTCCTAGGGGGACTGTGACATCACTACATTCCACTCCTCCAAGGGGGA----GAGGACCACATCAGCATGATGCCCGAGTTGCTGCTCCACGATGTGGGAGGGAAACACAGGGTTTTGACCCAGGTTCTCGGAGATGCCAGCCCAAGAAGCTCAGGGAGGTCGAGCTTAGGGCAGTGGAAGGAGAGGGCAGAGTCTGCAATAGGGAGCCCCAGGAGTCACCAGCCTAAAGTCACCCAGGGATGACTGGTGAGGGCGGGGC-CTGGGGCTGGGAGACCCAGGTCCTAGGAGACACAAGTCCAAAGAGCCCAGGGAGGTTGGGCTT-------------------------------------------GGGGCAGCAGGAGGTGAGGGCCGAGTATGAAGCAGGGAGCCCAAGGAGTCAGCCGCCCAAAGTCACCCTGGGGTGACTGGCAAGGGCAGGGACTGGGCTCCTTGCTGAAGGGGTGGGGCTGACTGACAAGACTTTGGTC-GGGGGAGCCCAGGGGCACTGGTGTTGGGGGCCCCAGTCTGGTATGCCTCAGGAGTGCTATGGACTCTGACACCGGTCTTATCATCAGAGGGGATCTGTGGCTGGGTTGGGG---GCCATGACCTAGTGCATTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGTGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACATCAGCAAAATCCCAGTGAGCACTGCTGAATGCCTCCAGTCACCTACCAGGCAGCTGTGCGACTCAGCCACAGGAGGCGTAACCAGGGCCCCACTATAATGCAGAATAAGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCNNNNNNNNNNCCACTAGAATGCAGAATAGGGGCGTGCCTTTATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAAGCAGCAGCATGTCCAGAGGGACCTGTGGCTTCACAAGGAAAGCTGCCCATGCAACCGCTGGCCCCGCCCACTCAGAGAGAGGGGAGGGGCC-GCCCACTC--AGAGAGGGGAGGGGCTGGCTTTTGCTTTAAAAGCTTTAAAACTGTAAAAAATAAACTTTAAAA---Atatgtgtgtatactttatata---tatatgtgtgtgtctgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTGTCCAGCTTCTGTGCAAAGTCTATGATTTTTGGCCTATATTTTTCATCTTCAAATGGAGCACAAGAATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCCGACTATAGTATCCAACATTCCAGTAAGACAAAATAAGCACAATGATTTCTCTTATTTGGAAAAATATTTGTCTTATTCTCCTACATTATTGTTAAGATTTCTTTTAAAAACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22738386 2273 - 121039945 GGGCAATAATGgaacttaaactcagtcttctgactccaagttctggggttttgccacGAATCAGTAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAAGTAAACATTAAGTAGACAGGAACTGCACTCTGTGTGGGTTACAGTCATACATCCTCACATGTCTGTTAGTGT---GAAGTGCACCAGTACCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAGCTTTTTTGTTAAATCTGGGAATTTATCAGAAAGAGGACAACTCAAGTCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACATTAATGTTTTT----TCTCAAGAGAATCAAGGGAAATGGATGCTTCAGAAAGATCTCCCACATTTATCCTCTGGCACCCAATGTACCCCAAGTTGAGATGATATGAGGAAGATTCAAGCTGTCAAGTTCAATTTCCCAAGATCTATTCCACAGAAGATGAGTAAATCTCACTCCAGCGACCACTGACTGAAGGACAGTCTGGTCCCAGAACCATGAAGAATTAGAATATGAGGTGGAGAACTCAGAAAAGAATGTTAAAGTCTCTCTGGAGAGTAGAAGCCTGGGAGAaaaccaaaccaaaccaaaccagaccaaaccaaacTTGTTCTCCCATCGCCACCCAGAGATACTGTCAATGTTTTGAGCTCACGGGAGAAGTGTAGGCTTTTCACATTGTCCAT--GTCTATGTGAAGGGAGTAAGGCAGCCTGAAACCTCTTGCCCCAAGGTCCCATAGTCCCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGCGTGAGAATGCTTAGGGGACTGGATTGTAAGATCAAAGGCCGGTCTTGAAGCAGTAATGAGGGTTCCTGGGGG-ACTGTGACATCACTACATTCCACTCCTCCTG-GGGGAGTGGGGGAAGAATATCAGTGTGATGGCTGAGTCACCGATTCACAATGGCAGGGGCGGATGTAGGGCTGGGACCCAGGTCCATGGAGACACCAGCCCAAAGAGCCCAGGGATGTCGGGCTTGGGTCAGCAGGAGGGGAGAGCGGAGTCTGCAGCAGGAAGCCCCAGGAGTCACCAGCCCAAAGTCACCCAGGGATGACTGGCGAGGGTGGGGC-CTGGGGCTGAGGGACCCAGGTCCTTGGAG-----AGCCCAAAGAACTCAGGGAGGTCGGGCTT-------------------------------------------GGGGTGGCAGGATGTGAAGGCTGAGTATGGAGCAGGGAGCCCCAGAAGTCACTTGCCCAAAGTCACCCTGGGGTGATTGGTGAGGGCAGGGCCTGGGCTGCTTGCTGAAGGGGCGGGGCTGACTGACAAGACTTTGGTTGGGGGGAGCATAGAGGCGCCAGGGTGGGGGTACCCAGCCCCGTGTGCCTCAGGAGTGGTATGGACTCTGGCAGTGGTCTTGCCATCAAAGGGAATCTGTGGCTGGGTTGGGGGGAGCCATGATCTGATGCGTTTTACCTCTTTCTTGGCTGCGGCCAGTTTACTCTGTTGAGTTTCTTCTAACATCATGGGGTGGGGAGGGTGGCAGGGTTGGGGCCACATCAGCG---------------------AACACGTCCAGTCACCTACCAGGTAGCTGTGCGACTGAGCCAGAGGAGGCGTAACCAGGGCACCACTAGAATGCAGAAT-GGGGCGGGGCCTTA-----------------------------------------------------------------------------------------------ATGCTCCAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAAAGAGGCGTGGCCAGGCAGCAGTGTGTCCAGAGGAACCTGTGGCATCACAAGGAAAGCTGCCCAGGCAACTGCTGTCCCCATCCACTTGAGGAGAGGGGCGGGGCCTGCCTACTCCAGGAGAGGGGAGGGGCCGGCTTTTGCTTTAAAAGCTTTAAAACTTT-AAAAATAAACTTTAAAAAATATATGTGCTTATACTTtatata---ta----tgtgtatcagtgtgcgtatgtgtacgtgtTCCACCAGAGCTGTCTTCATTATCCAGCTTCTATGCAAGGTCTATGA-TTTTGGCCTACATTTTTCATCTTCAGATGAAGTACAAGAATTAGCAGTATTACCTCAATTGAGATACAAATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGTTTAATGAAACGGACTATATTATCCAACATTCCAATAAG-----ATAATCACAATGATTTCTCTGTTTTGGAAAA--GTTTCTCTTGTTCTCCTGCATTATTAAGATTTTTTTTTTTTTAAACAAGAAGCATGTCTAATATCTTTAAAAACACAAAGATTTTGT
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112837321 2214 - 170124641 AGGCAATAATGGAACTTAAACTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGCCATGAATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAAGTAAACATTAAGTAGGCAGGAACTGCACACTGTGAGGTTTGGAGTCACACATCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCGGGACCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAGGTTTTC-GGTAAATCTGTGAATT------------------------------------------------------------------------TCATCCCTAAGTACATtaatgttttttctctctcaagagaatcaagggaaactgatgcttcagaaagatctcccacatttatcctgagacACTCAAAGTA--CCAGGTTGAGATAATATGAGGAAGATTCAAGCTATCAAGTTCAGTTTTCCAAGATCTATTCCACAGAAGATAAGCAAATCTCACTTCAGAGACCACTGACTGAAGTGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAGAAAAACATGTTAAAGTCTCTCTGGAGAGTAGAAGGCTGGGAGAAAA--------------------CCAATCCAAACCCATTCTCCCATTGCCACCCAGAGATACTGTCAACG-TTTGATCTCACAGGGGAAGTGTAGGCTTTTCACAAAGTCAAT--GTCTATCCGAAGGGAGTAAGGCAACCTGAAACCTGTTGCTCCTAAGTCCCATTGTCCCCATTCCCCTCCCAGCTGGAAATTTGTGCTGCGGCCAGAGGAACCAGAAATGGGGCGAGGATGCTTAGGGGACTGAGTTATAAGATCAAAGGCTGGTCTTGCAGCAGTAATGACAGTTCCTTGGGGGACTGTGACATCACTACATTCCACTCCTCCTG-GGGGA-GGGGGGAACCACATCAGTGCAATGGTTGAGTTGCTGATCCATGATAGGGGAGGGGGATATAGGGCTGGGACCCAGGCCTTTGGAGGTGCCGGTCCAAAACGCCCAGGAAGGTCAGGCTCGGGTCAGCAGGAGGGGAGAGCAGAGTCTGCAGCAGGGAACCGTAGGAGTCAGCAGCCCAAAGTCACCCAGGGATGACTGGTGATGGTGGGGTGCTGGGGCTGGGGGACCGAGGTCCTCGGACAGGTGAGCCCAAAGAATCCAGGGAGGTTGGGCTTGGGGCGGTGGGATGTGAGAACCAAATCCAGGGAGGTTGGGCTTGGGGCGGTAGGATGTGAGAACCAAGTATGGAGCAGGGAGGCCCAGGAGTCACCCATCAAAAGTCACCGTGGGGTGATTGGTGAGGGCAGAGGCTGGGCTGCTTGCTGAAGGGGTGGGGTTGACTGATGAGACATTGGTG-AGGGGAGCCCAGAGGCACCAGTGT-AGGGGACTCAGCTTGGTGTGCCTGAGGACTGGTATGGATTCTGGCAGTAGACTTGTCATTGGAAGAGATCTCTGGCTAGGTTGGGGG--GCCATGACCTGTTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTTTCTCTGTCGAGTTTCTTCTAACATTGTGGGGTGGGAGG---------GTTGGGGCCACATCAGGG---------------------AACACCTCCAGTCACCTACCAGTCAGCTGTGTGACTGAGCCAGAGGAGGCGTAACCAGGGCCCCACTAGAATGCAGAATGGGGGCGTGGCCTTA-----------------------------------------------------------------------------------------------ATTCTCCAAGCCCATTGGTCACTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAAGCAGCCGTGAGGCCAGAGGAACCTGTGGCATCACAAGGAAAGCTGCCCATGCAACTGCTGT-CCCGCCCACTTGGAGAGAGGGGTGGGGCCTGCCTACTCCGGGAGAGGAGAGGGGCTGGGTTTTGCtttaaaacttt----------aaaaataatctttaaaaaatatatGTGTTTATACTTTATATGTGCTA----TGTGTGTCAGTGTGTGTGTGTGTACATGTTCCTCCAGAGCTCTCTTCATTATCCAGCTTCTATGCATGGTCTATGA-TTTTGGCCTACATTTTTCACCTTCACATGGAGTACAAGAATTACCAGTATTACCTCAATTGAG--ACAAATCCTATAAAAATGGAAAATCCATAGCATGTTTGATGATTAATGAAGTGGGCTATATTATCCAACATTCCAATAAGGTAAAATAATCACAATGATTTCTCTTTTATGAAAGA-CATTTCTCTTATTCTCCTACATTATTTGGA----TTTTTTAAAGAACAAGAAACATGTTCAATATCTTTAAAAACACAAAGCATTTGg
i rheMac3.chr7                  I 16 C 0
s papAnu2.chr7                  108956431 2178 - 162156779 -GGCAATAATGGAACTTAAACTCAGTCTTCTGACTCCAAGctctggggttttgccatgaatCAGCAGCTGCCAGAGACCAAAACCAGAGGCAGAGGTAGAAAAGTAAACATTAAGTAGGCAGGAACTGCACACTGTGAGGTTTGGAGTCACACATCCTCACACATCTGTTAGTGTGAAGAAGTGCACTGGGACCTCTCAAACTTTTATATCAATGTgtcctcatggcagaaggcaggtTTTT-GGTAAATCTGTGAATT------------------------------------------------------------------------TCATCCCTAAGTACAttaatgttttttctctctcaagaGAATCAAGGGAAACTGATGCTTCAGAAAGATCTCCCACATTTATGCTGAGACACTCAAAGTA-CCCAGGTTGAGATGATATGAGGAAGATTCAAGCTATCAAGTTCAGTTTTCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGACCACTGACTGAAGGGCAGTCTGGTCCCAGAACTGTGGAGAATTAGAATATGAGGtggagaactcagaaaaacaTGTTAAAGTCTCTCTGGAGAGTAGAAGCctaggaaaaaa--------------------tgaaagcaaacctATTCTCCCATTGCCACCCAGAGATACTGTCAACG-TTTGATCTCACAGGGGAAGTGTAGGCTTTTCACAATGTCAAT--GTCTATGCAAAGGGAGTAAGGCAACCTGAAACCTGTTGCTCCTAAGTCCCATTGCCCCCATTCCCCTCCCAGCTGGAAATTTGTGCTGCGGCCAGAGGAACCAGAAATGGGGCGAGGATGCTTAGGGGACTGAGTTATAAGATCAAAGGCTGGTCTTGCAGCAGTAATGACAGTTCCTTGGGGGACTGTGACATCACTACATTCCACTCCTCCTg-ggggagggggggAACCACATCAGTGCAATGGTTGAGTTGCTGATCCATGATAGGGGAGGGGGATATAGGGCTGGGACCCAGGCCTTTGGAGGTGCCAGTCCAAAATGCCCAGGAAGGTCAGGCTCGGGTCAGCAGGAGGGGAGAGCAGAGTCTGCAGCAGGGAACCGTAGGAGTCAGCAGCCCAAAGTCACCCAGGGATGACTGGTGATGGTGGGGCGCTGGGGCTGGGGGACCGAGGTCCTCGGAAAGGTGAGCCCAAAGAATCCAGGGAGGTTGGGCTT--------------------------------------------GGGCGGTAGGATGTGAGCACCAAGTATGGAGCAGGGAGCCCCAGGAGTCACCCACCAAAAGTCACCGTGGGGTGATTGGtgagggcagaggctgggctGCTTGCTGAAGGGGTGGGGTTGACTGACGAGACTTTGGTG-AGGGGAGCCCAGAGGCACCAGTGT-AGGGGACTCAGCTTGGTGTGCCTGAGGACTGGTATGGATTCTGGCAGTAGACTTGTCATTGGAAACGATCTCTGGCTAGGTTGGGGG--GCCATGACCTGGTGTTTCTTACCTTTTTCTTGGCTGCTGCCAATTTTCTCTGTCGAGTTTCTTCTAACATtgtggggtgggaagggaggcagTGTTGGGGCCACATCAGCG---------------------AACACCTCCTGTCACCTACCAGGCGGCTGTGCGACTGAGCCAGAGGTGGCGTAACCAGGGCCCCACTAGAACACAGAATAGGGGTGTGGCCTTA-----------------------------------------------------------------------------------------------ATGCTCCAAGCCCATTGGTCAATgagaaagatgaaagggaaaggaggCATGGCCAGTGAGCAGTGTGTCCAGGGGAACCTGTGGCATCACAAGGAAAGCTGCCCATGCAACTGCTGT-CCCGCCCACTTGGAGAGAGGGGTGGGGCCTGCCTACTCCgggagaggagaggggctgggttttgctttaaaacttt----------aaaaataatctttaaaaaa-atatgtgtttatactttatata---ta----tgtgtgtcagtgtgtgtgtgtctacatgttCCTCCAGAGCTGTCTTCATTATCTAGCTTCTATACATGGTCTATGA-TTTTGGCCTACATTTTTCATCTTCAGATGGAATACAAGAATTACCAGTATTACCTCAATTGAGACACAAAtccaataaaaatggaaaatccatAGCACGTTTGATGATTAATGAAGTGGACTATATTATCCAACATTCCAATAAGGTAAAATAATCGCAATGATTTCTCTTTTATGAAAGA-TATTTCTCTTATTCTCCTACATTATTagga----ttttttaaagaacaagaaacatgttcaatatctttaaaaacataaagcatttgg
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I
e macFas5.chr7                  106459921 3474 - 171882078 I

a score=428247.000000
s hg38.chr15_KI270850v1_alt         60165 380 +    430880 gccgggtgcggtggctcacgcctgtaatgccatcactttgggaggccgaggtgggtggattgcctgaggtcaggagttcgaga------------------------------------------------------------ccagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaaactagccag--------------------------gcgtggttgcgggtgcctgtaatcccagctatttgggaggctgaggcaggagaatcacttgaacccaggagatggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagactccatctcaaaagaaataaaataaaatacaaaataaGTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAATTACAAGGCC----------------------------------------------------------------------------------------C
s panTro4.chr15_GL392289_random     63186 380 -    187897 gccgggtgcggtggctcacgcctgtaatgccatcactttgggaggccgaggtgggtggattgcctgaggtcaggagttcgaga------------------------------------------------------------ccagcctggccaacatgaagaaaccctgtctctactaaaaatagaaaaactagccag--------------------------gcgtggttgcgggtgcctgtaatcccagctatttgggaggctgaggcaggagaatcactggagcccaggagatggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagactccatctcaaaagaaataaaataaaatacaaaaTAAGTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAAATACAAGGCC----------------------------------------------------------------------------------------C
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17478185 380 -  99152023 gccgggtgcagtggctcatgcccgtaatgccatcactttgggaggccgaggtgggtggatcgcctgaggtcaggagtttgaga------------------------------------------------------------ccagcctggccaacatgaagaaaccctgtctctactaaaaatacaaaaactagccag--------------------------gcatggtggtgggtgcctgtaatcccagctatttgggaggctgaggcaggagaatcacttaaacccaggagatggaggttgcagtgagccaagctcatgccactgcactccagcctgggtgacagagaaagactccatcccaaaagaaataaaataagatacaaaataaGTAAGAACACAAAGCTTCCAGTTTAATAAGCACTTAAAGCTCTTTACTGGTTTAAAACAAATACAAGGCC----------------------------------------------------------------------------------------C
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22740659 374 - 121039945 gccaggtgcggtggctcactcctgtaatctcagcactttgggaggcctaggtgggtggatcaccttaggtcaggagttcaaga------------------------------------------------------------ccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaactagacag--------------------------gtgtggtcatgggtacctgtaatctcagctactcgggagactgaggcaggagaatcacttgaacctgggaggcagaagttgcagtgagccaaggtcacgccactgcactccagcttgggtgacagactgagactccatctcaaaaaaga------aaagtaaaaaattaataaaaaCACAAAGCTTTCCATTTAGTAAGCACTCAAAGCTCTTTACTGGGTTAAAGCATATACAAGGCC----------------------------------------------------------------------------------------T
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112839535 361 - 170124641 gcagggtgcggtggctcacacctgtaatcccagcactctgggaggc--------------------------------ctagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnngtgtggtggtgggtacctgtaatctcagctactcgggaggctgaggcagtag-atcacttgaatcagggaggcagaagctgcagtgagccaaggtcatgccactgcactccagcctgggtgacaaagtgagactccatctcaaaagaaataaaataa--gaaaaaataaataaAAACACAAAGCTTTCAATTTAATAAGCACTCAAAGCTCTTTACTGGTTTAAAG-----------------------------------------------------------------------------------------------------C
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  106463395 454 - 171882078 gccaggcctgatggttattgcctacaatcccagcactttgagaggctgaggcgggtggatcacctgagctcaggagttcaaga------------------------------------------------------------ccag-ctggccaacatcatgaaaccctgtctctactaaaaatacaaaaactagctgg--------------------------gcatggtggcagacacctgtaatcccagtcacttgggagcctgaggcaggggaatcgcttgaaccagggaggtggaggttgtagtgagccaaaattgtgccactgcatttcagcctgagcaacagaataagactcagtctctaaataaaT-------------CATTAAATAATTACACAATGCTTTCCATTTAATAAGCACTCAAAGCCCTTTATCAGTTTAAAATAAATACAAGCCCCTTGTAAAGTAAGGCTAAATGCTAAGTGATGCGGGAGAGAAAAAGGACATAAGTAACTCCTACTCTCATGAGGTTAATGACTAAATCCT
i macFas5.chr7                  I 3474 C 0
s papAnu2.chr7                  108958609 335 - 162156779 gcagggtgcggtggctcacacctgtaatcccagcactctgggaggcctagatgggtggatcaccttaggtcaggagttcaaga------------------------------------------------------------ccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagctagccag--------------------------gtgtggtggtgggtacctgtaatctcagctactcgggaggctgaggcagtag------------------------------------------tcacgccactgcactccagcctgggcgacaaagtgagactccatctcaaaagaaataaaataa--taaaaaataaacaa-aacacaaagctttCAATTTAATAAGCACTCAAAGCTCTTTACTGGTTTAAAGCATATACAAAGCC----------------------------------------------------------------------------------------C
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20303395 3929 -  24206276 I

a score=2711673.000000
s hg38.chr15_KI270850v1_alt         60545 1288 +    430880 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAGCTGAATTTCTCACTTGATACTTGGCTCTCACTTGCAGTCATGAAAACCAAGAATT-TGTTATGTCACTGTGTATTGCTTGTTACCTGAAATCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCACACCAAACTAAGCTTTTTTTCTAGAGCTCTGCAACTTACAGTTAGTATATGAGagcagttctcaaaaatgtagtctctggactagcagctccagcagcacctgggaacttcttataaatacacatcctccggccccaccctggacctgatgaatcagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAACCAGGGATACTATATGTTT--TCTCTATATGAAACAATGACGTGCAATTAAAAGACATAAATCTCCTTCCTGCTCCCACCTTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAA-------CAATCAGAGATTTTGTCTAAATCGCATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTTATCCAATATCATTTATATTCTCTTACATGTGAAG-TTTTAGAGAAGGATC-------TTCACAATGTAAGACTCAGGCACACTAGCAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAAGTGGAATCATTGGCTATATTTTCAAATTGCAATAAACAGGATAT-TAAAGTTTTGAA-TTTTTTTCACCTTCATCCTTCCACGTTAATAGAATTAAGCCAAAATACTT--GTCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATACCTGCAAAGATGAAGAACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAACAAAACTAAACTCTCggctgggagctctagttcatg-cc-gtaatcccagcactttggcaagcaaaggtgggaggattacttgaagtcaggaattcaagaccagccttggcagcatagtgaattcacacctctacagaaag-tttttaaaattagctggg
s panTro4.chr15_GL392289_random     63566 1290 -    187897 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATCACTTGCAGTCATGAAAACCAAGAATT-TGTTATGTCACTGTGTATTACTTGTTACCTGAAATCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCACACCAAACTAAGCTTTTTTTCTAGAGCTCTGCAATTTACA-TTAGTATATGAGagcagttctcaaaaatgtagtctctggactagcagctccagcagcacctgggaacttcttataaatacacattctcaggccccaccctggacctgatgaatcagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAACCAGGGATACTATATGTTCTGTCTCTATATGAAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTGCTCCCACCTTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAGGAAAA-------CAATCAGAGATTTCGTCTAAATCGCATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTTATCCAATATCATTTATATTTTCTTACATGTGAAG-TTTTAGAGAAGGATC-------TTCACAATGCTAGACTCAGGCACACTAGGAGTTCTATAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAAGTGGAATCATTGGCTATATTTTCAAATGGCAATAAACAGGAAAT-TAAAGTTTTGAATTTTTTTTCACCTTCATCCTTCCAAGTTAATAGAATTAAGCCAAAATACTT--GTCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATACCTGCAAAGATGAAGAACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAACAAAACTAAACTCTCggctgggagctctagttcatg-cc-gtaatcccagcactttggcaagcaaaggcgggaggattacttgaagccaggaattcaagaccagccttggcagcatagtgaattcacacctctacagaaag-tttttaaaattagctggg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17478565 1298 -  99152023 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCCTGTAAATGAAACTGAATTTCTCACTTGATACCTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGCTATGTCACTCTGTATTGCTTGTTACCTGAAATCCACACGAGGCTGGGATCAAGGGTTGAATCTTCCATGATTTTCTGCATAACCTGTGTGCTTCTTATCCCAGACCAAACTAAGA-TTTTTTCTAGAGTTCCACAATTAACAGTTAATAGACAAGagtggttctc-taaatgtagtctatggactagcagcaccagcagcacctgagacctttttataagtggaaattctcaggccccaccctggacctggtgaatcagaaactctgaagtagggttcagcaatgtgtgctgcagtaatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGTAAAATGTGTTTCCTTCTATAGGTCCAAAGCCAGGGTTACCACATGTTCTGCCTTGTTATGAAACAATGACATGCAATTAAAAGACATGAATCTCCTTCCTACTCGCACCCTCCATCCAATGTGTTTTATTTTTATGAGTTCAATAAGAAAACAAGTGGCAATCAGAGATTTAGTCTAAAAAGTATGTTTACAAGTGTCCATTCTCATCCAGCCTGATCTCCTACAAAACCATTTATATCCTCTTACATCTCAAG-TTCTAAAAAAGTATC-------TTCACAATGTAAGACTCAGGCACACTAGCAGTTCTATAATAAAACACCAAGTAGATCAGAATGTCCAACCTTACTAGAGAAGAAAAGTGGAATCGTTGGCTCTATTTTCAAATTGCATTCAACAGGAAAT-TTAAGTTTTGAATTTTTTTTCACCTTCATGCTTCCAAGTTAATAGAATTAAACCAGAATACGCCATTCTTTCAAAGCCTCTATGCAGGCAAAATTTTCCTGTATTATTTCTTGC-TCTCAATGGATATAATGCAGATTCCTGGTAGGCACATTCTGTATGCCTGCAAAGATGCAAAACTAAACAGTTCCATCTGTTCAATATTAAACCAAAAGTCCTGTAGACCTCGGATGGTGAGTGTAATACTTCAGCACTAGC-CCAAAGCCTCAAATATGAAAAGATACCAAGAAGCCCACTAGCAAACAAAACTAAACTCTCggccaggagcaggagctcacg-cctgtaatcccagcactttggcaagccaaggtggggggattacttgaagtcaggagttcaagactagcctgggcagcatagccaattcacatctccacaaaaat-ttttaaaaattagctggg
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   22741033 1296 - 121039945 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGACACTTGGCTATGACTTGCAAGCATGAAAACCAAGAATTGTGTTGTGTCACTGTGTATTGCTTGTTACCTGAATTCCACACTAGGCTGGGATCAAGGGTTCAATCTTTCATGATTTGCTCCATATCCTGTGAGCTTCTTTTCCCACACCAAACTAAGC-TTTGTTCTAGAGTTCTACAATTTACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactagcagcaccagcagaacctgagaactttttataactgcaaattctcaggccccaccctgtacctggtgactcagaaactctggagtagggctcagcaatctgtgctgcagtgatccctccaggtgTTCAAGAACCTCCGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATGCCATATGTTCTGTCTTGATATGAAACAATGGCATGCAATTAAAAGACATAAATCTCCTTCCTACTCCCACCCTCCATCCAATGTGTTTTATTTTTATGAGT----TAAGAAAACCAATGGCAATCAGAGATTCAGCCTAAAAAGTATATTTACAAGTGTCAGTTCTCATCCAGCCTGATCACATACAATAGCATTTACACCCTCTTACCTTTCAAGTTTTTTAAAAAGTGTC-------TTCACAATGTAAGTCTCAGATACACTAACAGTTCTATAATAAAACACCAAGTAGATCAGAATGTCCAGACTTACTAGAGAAGAAAAGTGGAATCACTGGCTGTATTTTCAAATTGCATTTGACAGGAAATGTTAAGTTTTGAA-TTCTTTTCACCTTCACACTTCCAAGTTAATAGCATTAAATCAGAATACTCCATTCTTCCAAAGCCTCTAGCCAGGCAAAGTTTTACTGTATTACTTCTTGC-TTTCAATGTATATAAAGCAGAGTCCTGCTAGGCAGATTTTGTATACCTGCAAAGATGCAGAACTAACCAGTTCCATCTATTCAATATTAAAACAAAAGTCCTGCAAACCTCAGATGGTGAATGTAATACTTCAGCACTAGCAGCGAAGCCTCAAATATAAAAGGATACCAAGATCACCACTAGCAAACAAAA-TGAGCTCTCAgccaggagcagtagttcacg-cctgtaatcccaaccctttggcaagccaaggtgggaggatcactttaaatcaggagttcaagaccagcctgggcagcatagtgaattcgcatctctacgaaaaa-ttttaaaaattagctgag
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  112839896 1297 - 170124641 ATTTATCTAGAATCACCTGACCTCTCTAAAACTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGACTTACAACAATGAAAACCAAGAACTGTGCTATATCACTGTGTATTGCTTGTTACCTGCATTCCACACTAGACTGAGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTGAGCTTCTTTTCCCACACCAAACTAAGC-TTTTTT-TAGAGTTCTACAATTCACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactagcagcaccagcagaacctgagaactttttataagtgcaaattctcaggccccaccctggacctcgtgaaagagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccagatgTTCAAGAAC----GACATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACCATATGTTCTGTCTTGATACGAAACCATGACATGCAATTAAAACACATAAATCTCCTTCCTACTCCCACCCTCCACCCAATGTGTTTTATTTTTATGTGTTAAATAAGAAAACAAGTGGCGATCAGAGATTCAGTCTAAAAAGTATATTTACAAGCGTCAGTTCTCATTCAGCCTGATCTCATACA-----ATTTACACCCTCTTACATCTCAAGTTTTTAAAAAAGTGTCTTCACATTTCACAATGTAAGTCTCAGGCAAACTAGCAGTTCTATAATAAAATGCCAAGTAGATGGGAATGTCCAAACTTACTAGAGAAGAAAAGTGGAATCATTGGCTGTATTTTCAAATTGCATTCAACAGGAAAT-GTAAGTTTTGAA-TTCTTTTCACCTTCACACTTCCACGTTAATAGAATCAAATCAGAATACTTCATTATTTCAAAGCCTCTAGCCAGGCAAAGTTTTATTGTATTACTTCTTTC-TTTCAATGGATATAAAGCTGAGTCCTGGTAGGTACATTTTTTATGTCTACAAACATGCAGAACTAAACAGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTTGGATAGTGAGTATAATACTTCAGCACTAGCACCAAAGCCTCAAATATAAAAGGATACCAAGAACTCCACTAGCAAAC-AAAATGAGCTCTCAgccagaagcagtagttcatgtct-gtaatcccagaactttggcaagccaaggtggtaggctcactttaagtcaggaattcaagaccagcctgggcagcatagtgaattcacatctctacaaaaaatttttaagaattagctggg
i rheMac3.chr7                  C 0 N 0
s macFas5.chr7                  106463849 1279 - 171882078 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCCTGTGAATGAAACTGAATTTCTCACTCAATACCTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACCGTGTATTGCTTGTAACCTGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTATGCTTCTTATCCCAGACCAAACTAAGC-TTTTTTCTAGAGTTCTGCAATTTACAGTTAGTATATAAGagtggttttcaaacatgtagtctctggaccagcagctctagcagcacctgggaacttcttataaatgcaaattctcaggccccacccaggacctgatgaatcagaaactctggactagggctcagcaatcggtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATATAGCAGGTAGTAAAATGTATTTCCTTCTGTAGGTCCAAAGCCAGGGATACTATATGTTCTGTCTCAAAATGAGAAAATGACATGCAATTAAAAGACGTATATC----TCCTACTCCCACCCTCCATCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAATGAGTGGCAATCAGAGATTTAATCTAAAACGTATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTCATCCAATATCATTTATATCCTCTTATGTGTAAA--TTTTAGAAAAGGATC-------TTCACAATGTAAGACTCAGGCATACTAGGAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAAATTACTGGAGAAGAAAACTGGAATCATTGGTTATATTTTCAAATTGCATTCAACAGGAAAT-TTAAGTTTTGAA-TTTTTTTCACCTTCAT-CTTCC-----AATAGAATTAAGCCAAAATACTCCAGCCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAATGGCTATAAAGCAGACTC---------ACATTTTGTATAGTTGCAAAGATGCAGACCTAAACAGTTCCATCTGTTCAAGATTAAAACAAAAGTCCTGTAAACCTCAGATGGTGAGTGTAATACTTCACCATTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAATCGAAAGTAAACTCTTggccgggagcactagttcatg-cc-gtaatcccagcactttggcaagccaaggtgggaggattacttgaagtcaggagttcgagaccagtctgggcagcatagtgagttcacatctctacaaaaag-ttttaaaaattagctagg
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108958944 1294 - 162156779 ATTTATCTAGAATCACCTGACCTCTCTAAAACTtgaaaatgaaactgaatttcTCACTTGATACTTGGCTATGACTTACAACCATGAAAACCAAGAATTGTGCTATATCACTGTGTATTGCTTGTTACCTGAATTCCACACTAGACTGAGATCAAGGGTTGAATCTTTTATGATTTGCTCCATAACCTGTGAGCTTCTCTTCCCACACCAAACTAAGC-tttttt-tAGAGTTCTACAATTCACAGTTAGTAGACAAGAGTGGTTCTCAAAAATGTAGTCTCTGGACTAGCAGCACCAGCAGAACCTGAGAACTTTTTATaagtgcaaattctcaggcctcacCCTGGACCTCGTGAAAGAGAAACTCTGGAGTAGGGCTCAGCAATCTGTGCTGTAGTAATCCCTCCAGATGTTCAAGAACCTCTGGCATACAGCAGgtagaaaaatgtgtttccttctGTAAGTCCAAAGCCAGGGATACCATATGTTCTGTCTTGATATGAAACCATGACATGCAATTAAAACACATAAATCTCCTTCctactcccaccctccacccaatgtgttttatttttatgagttaaataagaaaacaagtggCAATCAGAGATTCAGtctaaaaagtatatttacaaGTGTCAGTTCTCTTTCAGCCTGATCTCATACA-----ATTTACACCCTCTTACatctcaagtttttaaaaaagtgtc-------ttCACAATGTAAGTCTCAGACACACTAGCAGTTCTATAATAAAACACCAAGTAGATGGGAATGTCCAAACTTACTAGAGAAGAAAAGTGGAATCATTGGCTGTATTTTCAAATTGCATTCAACAGGAAAT-GTGAGTTTTGAA-TTCTTTTCACCTTCACACTTCCACGTTAACAGAATCAAATCAGAATACTTCATTATTTCAAAGCCTCTAGCCAGGCAAAGTTTTATTGTATTACTTCTTGC-TTTCAATGGATATAAAGCAGAGTCCTGGTAGGTACATTTTTTATGTCTACAAACATGCAGAACTAAACAGTTCCATCTGttcaatattaaaacaaaagtcCTGTAAACCTTGGATAGTGAGTGTAATACTTCAGCACTAGCACTAAAGCCTCAAATATAAAAGGATACCAAGAACACCACTAGCAAAC-AAAATGAGCTTTCAGCCAGAAGCAgtagttcatgtct-gtaatcccagaactttggcaagccaaggtggtaggatcactttaagtcaggagttcaagaccaacctgggcagcatagtgaattcacatctctacaaaaaatttttaagaattagctggg
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20307324 1283 -  24206276 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCCTGTGAATGAAACTAAATTTCTCACTCAATACCTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACCGTGTATTGCTTGTAACCTGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTATGCTTCTTATCCCAGACCAAACTAAGC-TTTTTTCTAGAGTTCTGCAATTTACAGTTAGTGTATAAGagtggttttcaaacatgtagtctctggaccagcagctctagcagcacctgggaacttcttataaatgcaaattctcaggccccaccctggacctgatgaatcagaaactctggactagggctcagcaatctgtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATACAGCACGTAGTAAAATGTATTTCCTTCTGTAGGTCCAAAGCCAGGGATACTATATGTTCTGTCTCGATATGAAAAAATGACATGCAATTAAAAGACATATATCTCCTTCCTACTCCCACCCTCCATCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAATGAGTGGCAATCAGAGATTTAATCTAAAACGTATATTTACAGGTATCAGTTCTCATCCAGCCCGATCTCATCCGATATCATTTATATCCTCTTATGTGTAAA--TTTTAGAAAAGGATC-------TTCACAATGTAAGACTCAGGCATACTAGGAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAAATTACTGGAGAAGAAAACTGGAATCATTGGTTATATTTTCAAATTGCATTCAACACGAAAT-TTAAGTTTTGAA-TTTTTTTCACCTTCAT-CTTCC-----AATAGAATTAAGCCAAAATACTCTAGCCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAATGGCTATAAAGCAGACTC---------ACATTTTGTATAGTTGCAAAGATGCAGACCTAAACAGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTCAGATGGTGAGTGTAATACTTCACCATTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAATCGAAAGTAAACTCTCggccgggagcactagttcatg-cc-gtaatcccagcactttggcaagccaaggtgggaggattacttgaagtcaggagttcaagaccagtctggacagcatagtgagttcacagctctacaaaaag-ttttaaaaattagctggg
i chlSab2.chr29                 I 3929 C 0

a score=19173.000000
s hg38.chr15_KI270850v1_alt         61833 13 +    430880 tgtggcagcacac
s panTro4.chr15_GL392289_random     64856 13 -    187897 tgtggcagcacac
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17479863 13 -  99152023 tgtggtggcacac
i ponAbe2.chr15                 C 0 n 0
s nomLeu3.chr6                   22742329 13 - 121039945 cgtggtggcacac
i nomLeu3.chr6                  C 0 I 45553
s macFas5.chr7                  106465128 13 - 171882078 tgtgtcagcacac
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  108960238 13 - 162156779 catggtggcacac
i papAnu2.chr7                  C 0 N 0
s chlSab2.chr29                  20308607 13 -  24206276 tgtgtcagcacac
i chlSab2.chr29                 C 0 C 0

a score=1820.000000
s hg38.chr15_KI270850v1_alt         61846 2 +    430880 TT
s panTro4.chr15_GL392289_random     64869 2 -    187897 TT
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106465141 2 - 171882078 TT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102440815 2 - 162156779 tt
i papAnu2.chr7                  N 0 C 0
s chlSab2.chr29                  20308620 2 -  24206276 TT
i chlSab2.chr29                 C 0 C 0
e nomLeu3.chr6                   22742342 45553 - 121039945 I
e ponAbe2.chr15                  17479876 0 -  99152023 I

a score=1224185.000000
s hg38.chr15_KI270850v1_alt         61848 1064 +    430880 CCTGGGGCAGATGTGCCATTGCTGGAAACTTCTCTATGGAGA--------GTACCAAGTACTTCTA-CCTGTAGCATTTTCCCTGGCTGGAATCCTGCAATTATCACAGTAGCCCGAGATCCAAGAAGGCAGAGCAGGAGCATCCTGTCCCCTCCCCAGCAGGTGCAA-GGGAGGCTGGGGGGTGAGGCACA----------------AGCCCGTGGGAGGGTGAGGAGCAGGAGGGATGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCAAATGTCTATTACAGGTTA------AATTAcagaagtatttcagattttgga----tttttttcagattttggaattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaatctggccttcgaacatcatgtcggcactcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatgctGTATTATCTTCTGAATGAGGCCACTCATTCAGGAAAGCCCAGAGCTTGGGGACGTGGAGCTGCAGACCAAAGAGGTGATTTCTGTAGTGGCTTTCAGTGCGGAAGGGCCTACAAAGTGGTTTAAAGCAAGCCACAAAATAGGAAACCCAATATTTAGCTAATGGAACTCTGATAAAACCTGCTCAAGATGTCTGTCTCTACTAATTCAGATGGAGCCAAGCCAAAGCATCATTATTATTTTAAAAAGGCACCAATCCCTCTGCAAAAGCACTGAATTATATCATGATACAATCATCAATTGTACCATGAATCACCATCAGCGGTggtcttttagggatatgaagaaggggttttcacaatacatcgcatgacacaccatcttccaaatctctaaacatttctctccac-agcccagtcctctccatagttgtccaaatccctccctcttttctcttgttgtctccaaaactcaaaaccatgctctgactttctatatcccgccctccccttcttggaccatctgggaagccccctgcttccccagggtgtcccctcctccccttctggga-tcagtcatctttcctcaaatggaccagttcggc
s panTro4.chr15_GL392289_random     64871 1064 -    187897 CCCAGGGCTGCTGTGCCATTGCTGGAAACTTCTCTGTGGAGA--------GTACCAAGTACTTCTA-CCTGTAGCATTTTCCCTGGCTGGAATCCTGCAATTATCACAGTAGCCTGAGATCCAAGAAGGCAGGGCAGGAGCATCGTGTCCCCTTCCCAGCAGGTGCAA-GGGAGGCTGGGGGGTGAGGCACA----------------AGCCAGTGGGAGGGTGAGGAGCAGGAGGGATGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTA------AATTAcagaagtatttcagattctgga----tttttttcagattttggaattcgaaaatctgaaatccaaaaggctccaatgagcatttcctttgaatctggccttcgaacatcatgtcggcactcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatgctGTATTATCTTCTGAATGAGGCCACTCCTTCAGGAAAGCCCAGAGCTTGGGGACGTGGAGCTGCAGACCAAAGAGGTGATTTCTGTAGTGGCTTTCAGTGCAGAAGGGCCTACAAAGTGGTTTAAAGCAAGCCACAAACTAGGAAACCCAATATTTAGCTAATGGAACTCTGATAAAACCTGCTCAAGATGTCTGTCTCTACTAATTCAGATGGAGCCAAGCCAAAGCATCATTATTATTTTAAAAAGGCACCAATCCCTCTGCAAAAGCACTGAATTATATCATGATACAATCATCAATTGTACCATGCATCACCATCAGCGGCGGTCTTTTAGGGATATGAAGAAGGGGTTTTCACAATACATCGCATGACACACCATCTTCCAAATCTCTAAACATTTCCCTCCAC-AGCCCAGTCCTCTCCATAGTTGTCCAAATCCCTCCCTCTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTATATCCCGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCCCCGCTTCCCCAGGGTGTCCCCTCCTCCCCTTCTGGGA-TCAGTCATCTTTCCTCAAATGGACCAGTTCGGC
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   22787895 1057 - 121039945 CCCAGGGCTGCTGTGCCATTGCTGGAACGTCCTCTTTGGAGGAACTTTGTGTACCAAGTACTTCTACCCTGTAGCATTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGTCCAAGATCCAGGAAGGCAGGGCGGGAGCATCATGCCCGCTTTCCAGCAGGTGCAAGGGGAGGCTGGGGGCTGATGCACAAGTCCAGCTAGCAGGGAGCCCGTGGGAGGGTGAGGGGTGGGAGGGGTGCATGGAGAGCCTCTATTGGCTGCTCACTGCCTTAGCTGGCAGGTCAGGACCCAATTGCAATTCCAGGATACAATACAATTAcagaagtattttggattttagatttttttttttcagattttggaatttgaaaatctgaaatccaaactgctccaatgatcatttcctttgaacctggcctttgagcatcctgtcggcactcaaacagttttggattttgaaccatttccaattttggattttcggattagggatgctATATTATCTTCTGAACGAGGCCACTCATTCAAGAAACCCCAGAGCTTGGGGAGATAGAGCTGCAGGCCAAAGAGGTGATTTCTGAGGTGCCTCCCACTGTGGAAAGGCCTACAAAGTGGTTTCAGGCAACCCAGAAAATAGGAAACCCAATATTTAGCTAACGGAACATGAATAAAGTCTGCTGAAGATGTTTGCCT---GTAATTTAAATGGAGCCAAGCCAATGCGTTACTAAAA---AAAAAAGACACCAATCTCTCTGCAAAAGCACTGAATTGTACCATG--------------------------TATCATCAGTGGTGGTTTTCTAGGGATATGAAGAAGGGGTTTTCACAATACATCACATGATACACTATCTCCCAAATCTCTAAACTTTTCTCTCCACAAGCCCAGTCCTT----TAGTTATCCAAATCCCTCCCTCTTTTCTCTTGCTGTCTCCAAAACTCAGAACTGTGCTCTGACTTTCTGCATCCTGCCC-CACTTTCTCGGCCTCCCTGGAAAGCCCCCCACTGCCCCAGGGTGTCCCCTCTTCCCCTCCTGGGGTTCCCCCATCTTTCCTCAAGTGGACC--------
i nomLeu3.chr6                  I 45553 C 0
s macFas5.chr7                  106465143 1036 - 171882078 CCCGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGA--------GTACTGAGTATTTCTA-CCTGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGCGAGTGCAA-GGGAGGCCGGGGGGTGATGCACA----------------AGCCTGTGGGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCGTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTA------AATTAcagaagtatttcagatttcaga----ttttttacagattttggaattcgaaaatctgaaatccaaaacgctccaataagcatttcctttgaacctggccttcgaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatgctGTATTATCTTCTGAATGAGGCCACTCATTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAGAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCACAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTGTCT--ACTAACACAAATGGAGCCAAGCCAATGCATTATTATCATTTGAAAAAGGCACCAGTCCCTCTGCAAAAGTACTGAATTGTATCGTG--------------------------AATCATCGCTGGTGGTTTTTTAGGGATATAAAGAAGGTGTTTTCACAATAGATCGCTCAACACACTATCTTCCAAATCTCTAAACATTTCTCTCCCC-AGCGCAGTCTTCTCCATAGTTGTCCAAATCCCCCCCTCTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTGTATCCTGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCCCTGATTCCCCAGGGTGTCCCCTTCTTCCCTCCTGGGA-TCCCTGATCTTTCCTCAAATGGAGCAGTTTGGC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102440817 1036 - 162156779 cctggggctgctgtgcCATTGCTGGAATCTGCTCTATGGAGA--------GTACTGAGTACTTCTA-CCTGTAGCACTTTCGCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGAGCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGCGagtgcaa-gggaggctggggggTGATGCACA----------------AGCCTGTGGGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAACTGGAAGGTCAGGACCCAATGTCTATTACAGGTTA------AATTACAGAAGTATttcggatttcaga----ttttttgcaGATTTTGGAATtcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaacctGGCCTTCGAACATCATATCGGCGCTCAAACAGTTttggattttgaagcatttcagattttgggttTTCAGATGAGGGATGCTGTATTATCTTCTGAATGAGGCCACTCATTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAGAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCACAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGTTCAAGATGTCTGTCT--ACTGACACAGATGGAGCCAAGCCAATGCATTATTATCATTTGAAAAAGGCACCAATCCCTCTGCAAAAGCACTGAATTGTATCATG--------------------------AATCATCGCTGGTGGTTTTTTAGGGATATAAAGAAGGTGTTTTCACAATAGATCGCACAACACACTATCTTCCAAATCTCTAAACATTTCTCTCCCC-AGCCCAGTCTTCTTCATAGTTGTCCAAATcccccccTCTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTGTATCCTGCCCTCCCCTTCTTGGACCACCGGGGAAGCCCCCTGATTCCCCAGGgtgtcccctcctcccctcctggga-TCCCTGATCTTTCCTCAAATGGAGCAGTTTGGC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20308622 1038 -  24206276 TCCGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGA--------GTACTGAGTACTTCTA-CCTGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGTGGGTGCAA-GGGAGGCCGGGGGGTGATGAACA----------------AGCCTGTGGGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAACTGGAAGGTCAGGACCCAATGTCTATTACAGGTTA------AATTAcagaagtatttctgatttcaga--ttttttttacagattttggaattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaacctggtcttcgaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatgcCGTATTATCTTCTGAATGAGGCCACTCACTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAAAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCACAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTGTCT--ACTAACACAGAtggagccaagccaacgcattattatcatttgaaaaaggcaccaatccctctgcaaaagcactgaattgtatcatg--------------------------aatcatcgctggtggttttttagggatataaagaaggtgttttcacaatagatcacacaacacactatcttccaaatctctaaacatttctctcccc-agcccagtcttctccatagttgtccaaatcccccgctcttttctcttgttgtctccaaaactcaaaaccatgctctgactttctgtatcctgccctccccttcttggaccacctgggaagccccctggttccccagggtgtcccctcgtcccctcctggga-tccctgatctttcctcaaatggagcagtttggc
i chlSab2.chr29                 C 0 C 0
e ponAbe2.chr15                  17479876    0 -  99152023 I

a score=472181.000000
s hg38.chr15_KI270850v1_alt         62912 290 +    430880 ctctcttagtttctccaactctgcatctcaacctttctcccttcactacacaataatgtccaggaggcaaagagcccacaaacctgggaacctccctttccagaagggaggttctggaatgactacaaatatttggttatgattttcttccctgccacGCCTGTTTTCATGGGCAGTGCTGAGCCCCGGTCCTGGCAGAGCTCAGAA-CCAGGCTCTCATGAGCTGGGGCAAGTGGGGCCTAGGGAACCTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGCTGCCCTGC
s panTro4.chr15_GL392289_random     65935 289 -    187897 CTCTCTTAGTTTCTCCAACTCTGCATCTCAACCTTTCTCCCTTCACTACACAATAATGTCCAGGAGGCAAAGAGCCCACAAACCTGGGAACCTCCCTTTCCAGAAGGGAGGAGA-GAGGTGACTACAAATATTTGGTTATGATTTTCTTCCCTGCCACGCCTGTTTTCATGGGCAGTGCTGAGCCCCAGTCCCGGCAGAGCTCAGAA-CCAGGCTCTCATGAGCTGGGGCAAGTGGGGCCTAGGGAACCTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGCTGCCCTGC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17580145 281 -  99152023 CTCTCTTAG-TTCTCCAACTCTGCATCTCAACCTT--CTCCTTCACTACACAATAATGTACAGGAGGCAAGAG--CCACAAACCAGGGAACCT-CCTTTCCAGAAGGGAGGAGA-GAGGTGACTAC-AATATTTGGTTATGATTTTCTT-CCTGCCACGCCTGTTTTCATGGGCAGTGCTGAGCCCCAGTACTGGCAGAGCTCAGAA-CCAGGCTCTTATGAGCTGGGGCAAGTGGGGCCTAGGGAGCCTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGCTGCCCTGC
i ponAbe2.chr15                 n 0 C 0
s nomLeu3.chr6                   22788952 286 - 121039945 --CTCTTAGTTTCTCTAACTCTGCATCTCAACCTTTCTGCCTTCACTACACAATAATGTCCAGGAGGCCAAGAGCCCACAAACAAGGGACCCTCCCTTTCCAGAAGGGAGAA---GAGGTGACTACAAATATTTGGTTATAATTTTTTTCCCTGCCACACCTGTTTCCACAGGCAGTGCTGAGCCCCAGTCCTGGCAGATCTCAGAATCCAGGCTCTCATGAGCCAGGGCAAGTAGGTCCCAGGGAGCCTCTGGGTTGAGGACATTGCATCCCACTCTGCAGctgccctgc
i nomLeu3.chr6                  C 0 N 0
s macFas5.chr7                  106466179 289 - 171882078 CTCTCTTAGTTTCTCCAACTCTGCATCTCAACCTTTCTTCCTTCACTACACAATAATGTCCAGGAGGCAAAGAGCCCACAAACCAGGGAACCTCCCTTTCCAGAAGGGAGGAGA-GAGGTGACTACAAATATATGGTTATGATTTTCTTCCCTGGCATGACTGTTTCCATGGGCAGCGCTAAGCCCCAGTCCTGGCATTCCTCAGAA-CCAGGCTCTCTTGAGCTGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAAGATCTTGCGTACTACTCTGCAACTGCCCTGC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102441853 289 - 162156779 CTCTCTCAGTTTCTCCAACTCTGCAGCTCAACCTTTCTTCCTTCACTACATAATAATGTCCAGGAGGCAAAGAGCCCACAAACCAGGGAACCTCCCTTTccagaagggaggaga-gaggtgACTACAAATATATGGTTATGATTTTCTTCCCTGGCATGACTGTTTCCATGGGCAGCGCTAAGCCCCAGTCCTGGCAGACCTCAGAA-CCAGGCTCTCTTGAGCTGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAAGATCTTGCGTACTACTCTGCAACTGCCCTGc
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20309660 289 -  24206276 ctctcttagtttctccaactctgcatctcaacctttcttccttcactacacaataatgtccaggaggcaaagagcccacaaaccagggaacctccctttccagaagggaggaga-gaggtgaCTACAAATATGTGGTTATGATTTTCTTCCCTGGCATGACTGTTTCCATGGGCAGTGCTAAGCCCCAGTCCTGGCATACCTCAGAA-CCAGTCTCTCTTGAGCTGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAGGATCTGGCATACTACTTTGCAACTGCCCGGC
i chlSab2.chr29                 C 0 C 0

a score=315232.000000
s hg38.chr15_KI270850v1_alt         63202 179 +    430880 TGATTTggctca-tgcaacctct-cctcctgggctcaagcgatccttctacatcggtctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtacagatggggtttcacctgtagcccaggctggtctcgaa-tcctgggctctagtgatctaccctcctc
s panTro4.chr15_GL392289_random     66224 180 -    187897 TGATTTggctca-tgcaacctct-cctcccgggctcaagcgatccttctacatcggtctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtacagatggggtttcacctgtagcccaggctggtctcgaactcctgggctctagtgatctaccctcctc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17580426 180 -  99152023 TGATTTggctta-tgcaacctct-cctcccgggctcaagcgatccttctacctcgatctcccaagtatctgggatctgggctaccatgtttggctaatttttgtatcttttagtacagatggggtttcacctgtagcccaggctggtctcgaactcctgggctcgactgatctaccctcctc
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101773140 182 + 121039945 TGATTTggctcactgctacctctgcctcccgggctcaagcaatccttctacctcggcctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtgcagacggggtttcacctgtagcccaggctggtctcgaactcctgggcttgagtgatctaccctcctc
i nomLeu3.chr6                  N 0 N 0
s macFas5.chr7                  106466468 182 - 171882078 TGATTTggctcactgcaacctctgcctcaccggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102442142 182 - 162156779 tgatttggctcactgcaacctctgcctcaccggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcaaactcctggactcgagtgatttatcctcctc
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20309949 182 -  24206276 TGATTTggctcactgcaacctctgcctcaccggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i chlSab2.chr29                 C 0 C 0

a score=230106.000000
s hg38.chr15_KI270850v1_alt         63381 176 +    430880 agcctcccaaagtgctgggattacaggtgtgagccactgcgcccggccTTgtgccagcttttaaatatcaacaaggacaaattagagaacagtggaagagggtgagcagcatgatgaggtgatacagaaataatttcacatgaagaacTGGGCATGCCTGGC-------TTTTTTTTTTTTTT
s panTro4.chr15_GL392289_random     66404 183 -    187897 ggcctcccaaagtgctgggattacagatgtgagccactgcacccggccTTgtgccagcttttaaatatcaacaaggacagattagagaacagtggaagagggtgagcagcatgatgaggtgatacagaaataatttcacatgaagaactgggcatgcttggcctttttttttttttttttttt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17580606 177 -  99152023 agcctcccaaattgctggggttacaggtgtgagccactgcgcccggccTTGTGCCAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATGAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCATGCTTGACC------TTTTTTTGTTTTTT
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106466650 176 - 171882078 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccTTGTGCCAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATAAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCATGCTTGACC------ttttttttttttt-
i macFas5.chr7                  C 0 I 17
s papAnu2.chr7                  102442324 176 - 162156779 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccttgtgccAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATAAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCAtgcttgacc------ttttttttttttt-
i papAnu2.chr7                  C 0 I 8
s chlSab2.chr29                  20310131 176 -  24206276 agcctcccaaagtgctgggattacaggtgtgagccactgcacccggccTTGTGCTAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATGAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCATGCTTGACC------ttttttttttttt-
i chlSab2.chr29                 C 0 I 337

a score=21664.000000
s hg38.chr15_KI270850v1_alt         63557 40 +    430880 AAGCTATTCTGGGTTGGATGCTGAGGCTCACACCTGTAAg
s panTro4.chr15_GL392289_random     66587 40 -    187897 aaGCCATTCTGggttgggtgctgaggctcacacctgtaag
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17580783 40 -  99152023 AAGCCATTCTGggttgggcgtgggggctcacacctgtaag
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106466843 32 - 171882078 AAGCCATTCTGggctgggcacaggggctcatg--------
i macFas5.chr7                  I 17 C 0
s papAnu2.chr7                  102442508 32 - 162156779 aagccattctgggctgggcacaggggctcatg--------
i papAnu2.chr7                  I 8 C 0
e chlSab2.chr29                  20310307 337 -  24206276 I

a score=3000.000000
s hg38.chr15_KI270850v1_alt         63597 2 +    430880 cc
s panTro4.chr15_GL392289_random     66627 2 -    187897 cc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17580823 2 -  99152023 cc
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102101939 2 + 121039945 cc
i nomLeu3.chr6                  N 0 C 0
s macFas5.chr7                  106466875 2 - 171882078 cc
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102442540 2 - 162156779 cc
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20310307 337 -  24206276 I

a score=17169.000000
s hg38.chr15_KI270850v1_alt         63599 9 +    430880 tgtaatccc
s panTro4.chr15_GL392289_random     66629 9 -    187897 tgtaatccc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17580825 9 -  99152023 tgtaatccc
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102101941 9 + 121039945 tgtaatccc
i nomLeu3.chr6                  C 0 I 1
s macFas5.chr7                  106466877 9 - 171882078 tgtaatccc
i macFas5.chr7                  C 0 I 291
s papAnu2.chr7                  102442542 9 - 162156779 tgtaatccc
i papAnu2.chr7                  C 0 I 291
s chlSab2.chr29                  20310644 9 -  24206276 tgtaatcct
i chlSab2.chr29                 I 337 C 0

a score=27012.000000
s hg38.chr15_KI270850v1_alt         63608 15 +    430880 agcactttgggaggc
s panTro4.chr15_GL392289_random     66638 15 -    187897 agcactttgggaggc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17580834 15 -  99152023 agcactttgggaggc
i ponAbe2.chr15                 C 0 I 285
s nomLeu3.chr6                  102101951 15 + 121039945 ttcactttgggaggt
i nomLeu3.chr6                  I 1 C 0
s macFas5.chr7                  106467177 15 - 171882078 agcactttgggaggc
i macFas5.chr7                  I 291 C 0
s papAnu2.chr7                  102442842 15 - 162156779 agcactttgggaggc
i papAnu2.chr7                  I 291 C 0
s chlSab2.chr29                  20310653 15 -  24206276 agcactttgggaggc
i chlSab2.chr29                 C 0 C 0

a score=530401.000000
s hg38.chr15_KI270850v1_alt         63623 333 +    430880 cgaggtgggtggatcacctgaagtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctggaattggtggcatgtgcctgtaattccagctac-tcgggcagctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgatatcgtgccattgcactccagcct-gggcaacaagagtgaaactctgcctc--------a----aaaaaaaaaaaaaaaaagaaagaaag-------aaaAGAAAATATATCTATGCACCAGAGCTCAACACTAGGTTAGGAGCATTTCTGAGATTTGGAGCTATT
s panTro4.chr15_GL392289_random     66653 348 -    187897 cgaggtgggtggatcaccggaagtcaggagttcaagaccagcctggccaaaatggtgaaaccccgtctctactaaaaatacaaaaaattagctgcaattggtggcatgtgcctgtaattccagctac-tcgggcagctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgatatcgtgccattgcactccagcct-gggcaacaagagtgaaactctgcctcaaaaaaaaa----aaaaaaaaaaaaaaaaagaaagaaagaaaaaaaaaaagaaaaTATATCTATGCACCAGAGCTCAACACTAGGTTAGGAGCATTTCTGAGATTTGGAGCTATT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17581134 337 -  99152023 cgaggtgggtggatcacctgaagttaggagttcaaaaccagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaaattagccaggcgtggtggcatgtgcctgtaattccagctac-tcgggcagctgaggcaagagaatcgcttgaacctgggaggcggaggttgcggtgagctgatattgcgccattgcactccagtgt-gggcaacaagagtgaaactctgactc-------------aaaaaaaaaaaaagaaagaaagaaag--aaaaGAAAAGAAAATATATGTATGCACCAGAGATCAACATTAGGTTAGGAGCATTTCTGAGATTTGGAGCTATT
i ponAbe2.chr15                 I 285 C 0
s nomLeu3.chr6                  102101966 330 + 121039945 cgaggtgggcggatcacctgacgtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaagatacaaaaaattagccaggcgtggtgaggtgtgcctgtaattccagctacagtgggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcggtgagctgatatcgcgccattgcactccagcctggggcaacaagagtgaaactctgcctc--------a----aaaaaaaaaaaaagaaa-----aaag-------aaaagaaaATATATCTACGCACCAGAgctcaacattaggttaggtgcatttctaagatttggagctatt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106467192 321 - 171882078 cgaggcaggtggatcacctgaagtcaggagttcgagaccagcctagtcaacatggtgaaaccccatttctactaaaaatacaatacattagccgggcatggtggcgtgtgcttgtaattccagctac-tcgggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgcactccagcct-gggcaac--gagtgaaactccgcttc--------c----aaaaaaaaaaagaaga-----------------agaagagaaTATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCATTTCTGAGATTTGGAGCTATT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102442857 325 - 162156779 cgaggcaggtggatcacctgaagtcaggagttcgagaccagcctagtcaacatggtgaaaccccatttctactaaaaatacaatacattagccgggcatggtggcgtgtgcttgtaattccagctac-tcgggcagctgaagcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgcactccagcct-gggcaac--gagtgaaactctgcttc--------caaaaaaaaaaaaaaaaaaaa-----------------agaagagaatatatGTACGCACCAGAGCTCAACATTAGCTTAGGAGCATTTCTGAGATTTGGAGCTATT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20310668 320 -  24206276 cgaggcaggtggatcacctgaagtcaggagttcgagaccagcctagtcaacatggtgaaaccccatttctactaaaaatacaatacattagccgggcatggtggcatgtgcttgtaattccagccac-tcgggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgca-tccagcct-gggcaac--gagtgaaactctgcttc--------c----aaaaaaaaaaaagaaa-----------------agaagagaaTATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCATTTCTGAGATTTGGAGCTATT
i chlSab2.chr29                 C 0 C 0

a score=377911.000000
s hg38.chr15_KI270850v1_alt         63956 185 +    430880 CAACCATGGAAGTTCCTGGCACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCATTTTTTTTGGGGGGGGGGTTGTGGGGGTATATACCATACCAGAttttttaaaaattgacat
s panTro4.chr15_GL392289_random     67001 184 -    187897 CAACCATGGAAGTTCCTGGCACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCA-TTTTTGGGGCGGGGGGGTTGTGGGGGTATATCCCATACCAGATTTTTAAAAAATTGACAT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17581471 178 -  99152023 CAACAATGGAAGTTCCTGGCACACACATCAGGTATTCATAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCA-TTTTTTTGGGGGG------ATGGGGGTATATCCCATACCAGATTTTTTAAAAATTGACAT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102102296 182 + 121039945 caacaatggaaGTTCCTGGTACACACATAAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCA-TTTTTTTGGTGGGGGGG--GTGGGGGTGTATCCCATACGAGATTTTTTAAAAATTGACAT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106467513 181 - 171882078 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTTATTTGCATCTTTGCA-TTATTTTTGGGGGTGGG--GTGGGGGCATATCCCATACTATA-TTTTAAAAAATTGACAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102443182 181 - 162156779 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTTATTTGcatctttgca-ttatttttggCGGTGGG--GTGGGGGCATAGCccatactata-ttttaaaaaattgacat
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20310988 181 -  24206276 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAGTACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTTATTTGCATCTTTGCA-TTATTTTTGGGGGTGGG--GTGGGGGCATATCCCATACTATA-TTTTAAAAAATTGACAT
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113945447 168 - 132174527 CAACAATGGAAGTTTTTGTTACACACATCAGGTATTCATAATACCCTTTCTCAGGTATTTGGTCACTGCT-GTGAGCCTGCCTGCGTCAGTGTTTCCCAAATGGCAGTC--------CTTGGCA-TTCTTTTTTTGGGTGGG------GGGTGTATCCCGTGCCAGA-TTTTTAAGAGCTGACAT
i calJac3.chr10                 N 0 I 542

a score=2294448.000000
s hg38.chr15_KI270850v1_alt         64141 1090 +    430880 taaaaatacatgtataaaatgtgtaaagt-----------------------------------gcactaa----tctaaagtgcactggatgtattttttattgatgtacatacttttgttatccatcacccaggtcaaaatacagaatcagcaccacagagggttccctcctcctccttcccagccaataatcttctcctcctacctaaccaactgttcttacttcaagcactgtcaactagtattttacattcttgaactgcatataaaGTGTCTCAAGTttcacttaacacttttcttgaaatacac-ttgttttttgccactttttatttgacctaagaagtaacattaatgaaacaatgatttgacgtgataggcatttccctcctaatgagcactaaaacacttaactatttgaaaaaagaagtttctccgtgtaccagctaatatattctcctcggccgccgttggtacacggaccacattttgTTTCTCAAAGCAATCCGATGATTTCTGAGGTCCTTTGCAGCTTGAAGACGGAACGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTTAGAGTGTCCTAGGCTGTGGACACACAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAATGCTACAGCTCAGGTAACCACGAGCACACAGAGAAAGGGCAGTTTCTAGAAACAGGGCGGAGAGGAGACCGT--GAGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACCCTGCTGTGATCACTTTGCCACAGAGCAGCCCCGGCGGT----------CAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGACGTTACTGCCTTCTTGCGTGCCCCGGCCACCCCCGGGCGGCTTGTAGCCGGTGCGCGGGGTGGCTGGGGCTACGTGCAG
s panTro4.chr15_GL392289_random     67185 1090 -    187897 TAAAAATACAGGTATAAAATGTgtaaagt-----------------------------------gcactaa----tctaaagtgcactggatgtattttttattgatgtacatacttttgttatccatcacccaggtcaaaatacagaatcagcaccacagagggttccctcctcctccttcccagccaataatcttctcctcctacctaaccaactgttcttacttcaatcactgtcaactagtattttacattcttgaactgcatataaaGTGTCTCAAGTtttacttaacacttttcttgaaaaacac-ttgttttttgccactttttatttgacctaagaagtaacattaatgaaacaatgatttgatgtgataggcatttccctcctaatgagcactaaaacacttaactatttgaaaaaagaagtttctccgtgtaccaactaatatattctcgtcggccgccgttggtacacggaccacattttgTTTCTCAAAGCAATCCgatgatttctgaggtcctttgcagcttgaacaCGGAACGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGGACGCAGAAGACTCAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAATGCTACAGCTCAGGTAACCACGAGCACACAGAGAAAGGGCAGTTTCTAGAAACAGGGCGGAGAGGAGACCGT--GAGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACCCTGCTGTGATCACTTTGCCACAGAGCAGCCCCGGCGGT----------CAACCTCAGCCTCCCTGAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGACGTTACTGCCCTCTTGCGTGCCCCGGCCACCCCCGGGCAGCTTGTAGCCGGTGCGCGGGGTGGCTGGGGCTACGGGCAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17581649 1086 -  99152023 TAAAAATACATGTTTAAGATGTgtaaagt-----------------------------------gcactca----tctaaagtgcactggatgtattttttattcatatacatacttttgttatccatcacccaggtcaaaatacagaaccagcaccacagacggttccctcctcctccttcccagccaataatcttctcctcccacctaaccaactgttcttacttcaatcactgtcaactagtattttacgttcttgaactgcatataaagggTCTCAATTtttacttaacgcttttcttgaaatacac-ttgttttttgccactttttatttgacctaagaaataacataaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcactaaaacacttaactatttgaaaaaagaagtttcttggtgtaccaactaatatactctcctcg------gttggtacacggaccacattttgTTTGTCAAAGCAATCCGATGATTTCTGAGGTCCTCTGCATCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTCGGGGAAATAGGGGAGTAAATCATTTCTCGACGTGTGGTTAAGTGCTACAGCTCAGGTAACCACCGGCACACAGAGAAAGGGCGGTTTCTAGAGACAGGGCGGAGACGAGACCGT--GGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACCCTACTATGATCACTTTGCCACAGAGCAGCAGCGGCAGT----------CAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCGTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGTTCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTCACCGCCCTCTTGCGTGCCCCGCCCACCCCGGGGCAGCTTGTAGCAGGTGCGCGGGCTGGCTGGGGCTATGTGCAG
i ponAbe2.chr15                 C 0 I 1078
s nomLeu3.chr6                  102102478 1094 + 121039945 TAAAAATACATGTTTAAAATATgtaaagt-----------------------------------gca---------ctaaagtgcactggatgtattttttattcatgtacatactttagttatccatcacccaggtcaaaatacagaaccagcaccacagagggttcccacctcctcctttccacccaataatcttctcctcctacctaacc-actgttcttacttcaatcactgtcaactagtattttacgttcttgaactgcatataaaGTGCCTCAATTTTTACTTAACGCTTTTCTTGAAATACAC-TTGTTTTTTGCCACTTTTTATTTGAcctaagaaataacattcatgaaacaatggtttgacatgatatgcatttccctcctaatgcgtactaaaacac--aactatttgaaaaaagaagtttcttcgtgcaccaagtaatatgttctcctcggccaccgttggtacacggaccacattttgCTTCTCAAAGCAATCAGATGATTTCTGAGGCCCTTTGCAGCTCGAACACGGAATGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGAGCCGTGCATCCACCCAACACTTGTTTAATACCTATATTTAATACCTAACACCTTAGACTGTGCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGGGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTACAGCTCAGGTAACCACTAGCGCACAGAGAAAGGGCGGTTTCTAGAGACAGGGCGGAGAGGAGACCATGGGGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACCCTACTTTGATCACTTTGCCACAGAGCAGCAGCCGCAGTCAACCTCAGCCAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCATGGAGCTGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCTTGCGTGCCCCGCCCACCCCCGGGCAGCTTGTATCCGGTACGCTGGCTGGCTGGGGCTATGTGCAG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106467694 1056 - 171882078 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgtatttttttttcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagcaac-caga-ggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacc-actgtcctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctcaatttttacttaacatttttcttgaagtacac-ttgttttttgccactttttatttgacctaagaaataccattaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcactaaaacacttaactatttgaaaaaagaagtatctttgtgtatcaactaatatattctcctcggccaccgttggtacacggaccacattttgTTTCTCAAAGCAACCAGATGATTTCTGAGGTCGTTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATACCGCCGTGCATCCATCCAACACTTG-------------TTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACTGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACGGT--A--------------AGAGAAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGTGGCAGT----------CAACCTCAGCCTCCCTTAGCAACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGGGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCCTGCGTGCCCCGCCCACCCTCGGGC-GCTTGTAGCTGGTGCGCAGGC-----GGGGCTGTGTGCAG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102443363 1056 - 162156779 taaaaatacatgtttaaaatgtgTAAAGT-----------------------------------GCACTAA----TCTTAAGTGCACTGGatgtattttttattcatgtatACACTTTTGTTATCCATCACCCAGGTCAAAATACAGAACCAGCACC-CAGAGggttccctcctcttccttcccagtCAATAATCGTCCCCTCCTACCTAACC-ACTGTTCTTACTTCAGTCACTGTCAACTAGTTTTGCACGTTCTTGAACTGCATATAAAGTGTCTcaattttt-cttaacatttttcttgaagtacac-ttgttttttgccactttttatttgACCTAAGAAATACCATTAATGAAACAATGGTTTGACGTGATAGGCATTTCCCTCCTAATGCGCACTAAAACACTtaactatttgaaaaaagaaGTAACTTTGTGTATCAACTAATATATTCTCCTCGGCCACCGTTGGTACACGGACCACATGTTGTTTCTCAAAGCAACCAGATGATTTCTGAGGTCGTTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTG-------------TTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACAGT--G--------------AGAGAAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCGGT----------CAACCTCAGCCTTCCTTAGCAACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGGGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCTCTC-GCTCCGCGTGTACTCACGGGAGGACTCACAGGCGTTACCGCCCTCCTGCGTGCCCCGCCCACCCTCGGGC-GCTTGTAGCTGGTGCGCAGGC-----GGGGCTGTGTGCAG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20311169 1071 -  24206276 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgtattttttattcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagcacc-cagagggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacc-actgttctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctcattttttacttaacatttttcttgaagtacac-ttgttttttgccactttttatttgacctaagaaataccattaatgaaacaatggtttgacgtgataggcatttccctcc-aatgcgcactaaaacacttaactatttgaaaaaagaagtatctttgtgtatcaactaatatattctcctgggccaccgttggtacacggaccacattttgTTTCTCAAAGCAaccagatgatttctgaggtcatttgcagctcgaacacggaatgactttgtggtGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTG-------------TTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCCGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGT--GGGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCGGT----------CAACCTCAGCCTCCCTTAGCAACTTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCTTGCAATCCTAGCTAGCAGCCCTC-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCGCCTGCGTGCCCCGCCCACCCTCGGGCAGCTTGTAGCTGGTGCGCAGGC-----GGGGCTGTGTGCAG
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113946157 1018 - 132174527 TAAAAATACATGTTTAAAACGTGTAAAGTTACTGGCTGTGGAAAAGAAAAATAAAAAAAGAAAAacaataaaacgtgtaaagtgcactagatgtatttttcattcatgtatatgcttttgttatccacctcccaggtcaaaatacagaaccagcaccccagagggttctctcctcctcc--------------------------------------------------------------------------tccTTGAAGTGTACTTCAAGAAG---AGTTtttacttaacactttttttgaagtacacttttttttttgccactttttatttga------------cattaatgaaacaatggtttgacgtgataggcattcccctcctaatgagcactacaacacttaactatttgaaaaaagaagtttcttcgtgtaccagctaatatattctcctcggccacagttggtacatagattacattttgTTTCTCAAAGCAaccagatgatttctgaggtcctttgcagctcgaacacggaatgactttgtggtGATCTAGTAGC--------CACGGAATGCACTGTCACAATCGTGATTCCGCCATAGCACCGTGCATCCATGCAACACTTG-------------TTTAATACCTAGCAGT---GACTCTGCTAGGCTGTGGACACAGAACACTAAACCCCACTTCCTGATTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCAGGATGTGTGGTTAAGTGCTACAGTTCAGGTAACCACTGGCACACAGAGGAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGT--GGGTGGGCATTTCCCAGAGCAGCCTCAGCCGGCCACCCCACTTTGATCACTTTGCCGCC-AGCAGCAGCGGCGGT----------CAACCTCAGCCTCCCTTAGCAACCTGCGTGCCCCGCCCAGGAGCCTTACTATTGGTGTCGTGGAGCGGAATGGGCAGCTCTGCCGTGCAATCCCAGCTCGTAGCCCTTGGCTCCGCGTGTATTCACTGGAGGATTCTCGGGCTTTATAACCCTCCCGCGTGCCCCGCCCACCC-CGGGCAGGCTGCTGCGCATGCGCGGGCAGGCTGGGTCTGTGTTCTG
i calJac3.chr10                 I 542 C 0

a score=2250077.000000
s hg38.chr15_KI270850v1_alt         65231 1512 +    430880 AGCTGTCGCGGAGCCGGAACAGCAGCGGTGAAGCCCCTCGGCTCGGCCGAGACCGCCGTGCCCATTGCTCGCCTCGGTTgccgccgctttagccgcagccgctgctgccgccgccgGGGGAGAGGCAGCCTA-TTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTCTCGGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCGGGATGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCTCGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCAGGGGCGGG---------CGGCACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGATGGGGGGCGCGCCCGGCGGCG-----------------------GATGGCCCCGAACCCTTGCCCCGGGTCCCCGGGTTGGCGCCGCTGGGGCGGACTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGCGAGGGAGCGGTTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCCGGCGGCGCCCGCCTGCTGGGGCCTCTCCGCTGTTTCTCGCGGGCGCGGCCCGGCTGAAACTGCGACCGTCGGAGGCGAGCGGCC--------------------------CTCTGGGACCCGTGCAGCCGGTCCACCTTGCAGCTATACTTTGAGACTAAACA----tt---------tttttttttttttttGCA-------------------------------AAGGCAAACCGGTATGTGAAGTTGAAAAAATCAAAAACCCTCAAAt--------tttcc-----tt----ctttttttt---ttttttttttttAAA-TCAAGAAAGGGGGTAGATAGGTTTGTTTTGTTTTAGAAATAGTTTTTATAGCAGAGTGATACCGTCACATTTAAT------GATCCTACTGTGAATTCAAGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGATACTCATTAATGAAGTTCGTTGGAGAA-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCCTTT----TTTT-------TTGTTACTACTC---------CCCCCTCCCCGC-ATTGTTTTATTTTTCGAAGAAGCACTTTATTCAGTTTTTCTAAGCCACGGGATTGCCCAGATGAGGACCAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATGAGTTGAGATAAACCAGTGTTACTGTTCTTGTATTCTGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTCTGGCTTATTATATGAACATGATTCTGTTTCACTTCCCCAGATGGAACTAGCTTAAATGTCTATCATTTATAGTGACAAATGATCAAAATGGCTAGAGTGTCATTTA
s panTro4.chr15_GL392289_random     68275 1520 -    187897 AGCTGTCGCGGAGCCGGAGCAGCAACGGTGAAGCCCCTCGGCTCGGCCGAGAccgccgtgcccatcgctcgcctcggttgccgccgctttagccgcagccgctgctgccgccgccgGGGGAGAGGCAGCCTA-TTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTCTCGGCTGGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCTCGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCAGGGGCGGG---------CGGAACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGATGGGGGACGCGCCCGGCCGCG-----------------------GATGGCCCCGAACCCTTGCCCCGGGTCCCCGGGTTGGCGCCGCTGGGGCGGACTCAGTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGGGAGGGAGCGGCTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCCGGCGGCGCCCGCCTGCTGGGGCCTCTCCGCTGTTTCTCGCGGGCGCGGCCCGGCTGAAACTGCGACCGTCGGAGGCGAGCGGCC--------------------------CTCTGGGACCCGTGCAGCCGGTCCACCTTGCAGCTATACTTTGAGACTAAACAAttttt---------tttttttttttttttGCA-------------------------------AAGGCAAACCGGTATGTGAAGTTGAAAAAAGCAAAAACCCTCAAAT--------tttccttct-tt----ctttctttc---tttttttttttTAAA-TCAAGAAAGGGGGTAGATAGGTTTGTTTTGTTTTGGAAATAGTTTTTATAGCAGAGTGATACCGTCACATTTAAT------GATCCTACTGTGAATTCAAGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGATACTCATTAATGAAGTTAGTTGGAGAG-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCCTTT----TTTT-------TTGTTACTACTC---------CCCCCTCCCCGC-GTTGTTTTATTTTTCGAAGAAGCAATTTATTCAGTTTTTCTAAGCCACGGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATGAGTTGAGATAAACCAGTGTTACTGTTCTTGTATTCTGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTATATGAACATGATTCTGTTTCACTTCCCCAGATGGAACTAGCTTAAATGTCTATCATTTATAGTGACAAATGATCAAAATGGCTAGAGTGTCATTTA
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102103572 1545 + 121039945 GGCCCGCGCAGAGCCGGAGCAGCAGCGGTGAAGTCCCTGGGCTCAGCCGAGACcgccgtgcccattgctcgcctcggtcgccgccgctttagccgtagcc------gccgccgccAGGGGAGCGGCCGCCTATTTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTTTCGGCTGGGCCTGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCAGGGTGCGGAGCGCGGCCGGT-CCCCTGCTGCCGCTCGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCGGTGGCGGGCGGGAGGGACGGGACGGACGGGTAGCCGGGCAGCGCGGGGACCTCAGCTTTGCAGACCCCTCCTCCCTGCGCATCATCCTTCTCCCACA-TGTCTGATAGGGGCGCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCACG-----------------------GATGGCCCTGAACCCCTGCCCCAGCTCCCCGGGTTGGCGCCGCTGGGGCGGACTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAGGTGCTGCGGGCGCGAGGGAGCGGCTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCTGGCGGCGCCCGCCGGCTGGGGCCTCTCCGCTGCTTCTCCGGGGCGCGGCCCGGCTGAAACTCCGCCCTTCGGAGGCGAGCGGCCCAGGAGGCCCGTGCGGTCCCCAAGCGCTCTGGGACCTGTGCAGCCGGTCCAACTTGCAGCTATACTTTGAGACTAAACA-----A---------TTTTTTTTTTTTTTTGCA-------------------------------AAGGCAAACCGATATGTGAACTTGAAAAAAGCAAAAACCCTCAAAt--------tttctttct-tt----ctttttttctttttttttttttttAAA-TCAAGAAAGGGGGTAGATAAGTTTGTGTTGTTTTGGAAATAGTTCTTACAGCAGAGTGATACCGTCATATTTAAT------GATTCTACTGTGAACTCAGGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGATACTCATTAATGAAGTTATTTGGAGAG-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCCTTT----TTTT------GTTGTTACTACT----------CCCCGTCCCCGC-ATTGTTTTATTTTTCGAAGAAGCAGTTTCTTCAGTTTTTCTAAGCCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAGATAAACCAGTGTTA--GTTCTTGTATTCTGTCGTGGACTCTTGGGTATTTGCAGGCTGCATTAAATACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTCTGGCTTATTATATGAACATGATTCTGTTTCAGTTTCCCAGATGGACCTAGCTTAAATATCTGTCATTCGCAGTGACAAATGAACAAAATGGCCAGAGTGTCATTTA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106468750 1500 - 171882078 GGTCAGCGCGTAGCCCGAGCAGTAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCAGTCGCCGCCTCTTTAGCCACCGCC------GCCTCTGCCGGGGGAGCGGCCGCCTA-TTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGTCTCGGCCG-----GCGGGGGAGCCCCGGGAGCTTCACTGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGCAAGTTTTGTAATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCTGCTAGGTGGGGCGGGCTCC------------GGAGCTGCGCAGGGCTTCCGgggcagg---------cgggacggacgggtagccgggcggcgcgggGACCTCAGCTTTGCAGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTT-GGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAACCC-TGCCCCGGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCCGGCGGCCTCCGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCCGGGGGCCGACGCAGACGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTGTCCCGGACGCGGCCCGGCTGAAACCCCGCCGCTCCGAGTCGAATGAC---------------------------CCAGGAGACCTGTGCGGTCGGTCCAACTTGCAGCTATACTTTGAGACTAATCT----TA------------TTTTTTTTTTTTGTA-------------------------------AAGGCAAACCGGTATGTGAAATTG-AAAAAGGAAAAACCCTCAAACAAAc----tttctttctctc----ctctctctc---tctttcttttttAAACTCAAGAAAGGGGGTAGATAGGT-----TTGTTTTGGAAATGGTTCTTATAGCAGAGTGATACCGTCACATTTAAT------GCTCCTACTGTGAACTCAGGAATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCCttttttgtttgtttg--tttgttACTACTTCCC----CCCCCACCCCCCGC-ATTGTTTTAATTTTCGAAGAAGCAGTTGTTTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTGGTTATTGGCAAGTTTGTGAAGAAGCTAAGATCAGTTGAGATAAATCATTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATGATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTA
i macFas5.chr7                  C 0 I 3
s papAnu2.chr7                  102444419 1499 - 162156779 GGGCAGCGCGTAGCCCGAGCAGCCGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCGGTCGCCGCCTGTTTAGCCACCGCC------GCCTCTGCTGGGGGAGCGGCCGCCTA-TTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGTCTTGGCCG-----GCGGGGGAGCCGCGGGAGCTTCACTGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCTGCTAGGTGGGGCGGGCCCC------------GGAGCTGCGCGGGGCTTCCGGGGCAGG---------CGGGACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGTATTGTCTGCCTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTT-GGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAACCC-TGCCCCGGGTCCTTTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCCGGCGGCCTCCGTTTGGAGTCCGCGCCCAGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCCGGGGGCCGACGCAGACGGTAAATCTGTCGGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTCTCCCGGACGCGGCCCGGCTGAAACCCCGCCGCTCCGAGTCGAATGAC---------------------------CCAGGAGACCTGTGCGGTCGGTCCAACTTGCAGCTATACTTTGAGactaatct----ta-----------tttttttttttttgta-------------------------------aaggcaaACCGGTATGTGaaattgaaaaaaggaaaaatcctcgaacaaactttatttctttctctc----ctctctttc---tctttcttttttaaactcaAGAAAGGGGGTAGATAGGT-----TTGTTTTGGAAATGGTTATTATAGCAGAGTGATACCGTCACATTGAAT------GCTCCTACTGTGAACTCAGGAATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--cagtgtgccttt----tttttttg--tttgttactactt-cc----cccccaccccccgc-attGTTTTAATTTTCGAAGAAGCAgtttattcagtttttctaaaCCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAACCAGTGTTGCTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAATTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGtgacaaatgaacaaaatagcCAGAGTGTCATTTA
i papAnu2.chr7                  C 0 I 3
s chlSab2.chr29                  20312240 1505 -  24206276 GGGCAGCGCGTAGCCCGAGCAGCAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCGGTCGCCGCCTCTGTAGCCACCGCC------GCCTCTGCT-GGGGAGCGGCCGCCTA-TTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGTCTCGGCCG-----GCGGGGGAGCCCCGGGAGCTTCACTGTGACAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGAGGGGGTGGCGGTGCGGAGCGCGGCCCGTCCCCCTGCGGCTGCTAGGTGGGGCGGGCCCC------------GGAGCTGCGCGGGGCTTCCGgggcagg---------cgggacggacgggtagccgggcggcgcgggGAGCTCAGCTTTGCGGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAACCC-TGCCCCGGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCTGGCGGCCTCCGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCCGGGGGCCGACGCAGATGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTCTCCCGGACGCGGCCCGGCTGAAACCCCGCCGCTCCGAGTCGAATGAC---------------------------CCAGGAGACCTGTGCGGTCGGTCCAACTTGCAGCTGTACTTTGAGACTAATCt----tt--------ttttttttttttttttGTA-------------------------------AAGGCAAACCGGTATGTGAAATTGAAAAAAGGAAAAACCCTCAAACAAAc----tttctttctctcctctctctctctc---tctttctTTTTTAAACTCTAGAAAGGGGGTAGATAGGT-----TTGTTTTGGAAATGGTTCTTATAGCAGAGTGATGCCGTCACATTTAAT------GCTCCTACTGTGAACTCAGGGATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCCTCT----TTTTTTTT--GTTGTTACTACTTCCC----CCCCACCCCCCCGC-ATTGTTTTAATTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAGCCAGTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTACAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTGTATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCACAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTA
i chlSab2.chr29                 C 0 I 3
s calJac3.chr10                 113947175 1534 - 132174527 -GGGAGCGCGGAGCCGGAGCAGCCGCGGAGGAGCGCTTGGGCTCCGCCGATACCGTAGTGTCCACTGCTCGCCTCAGTCGCCACTGCTTTAGCC------------GCCGCCACCGGTGGAGCGGCCGCCTA-TTGTCTTTCTCCGTGGCGAAGGTGAGGAGCTCTCCCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGCCGGAGTTGGGGGAAGTTTTG--ATTTGAGGA-GG--------------------------------------------GGGGCG------------------GGGTCTGCAGCGGGCTTTAGGGGCGGG---------CGGGACGGACGGGTTGCCTGGCGGCGCCGGGACCTCTACTCTGCGGACCCCTCCTCCCTTCGCATCACCCTTCTCCCGCATTGTCTGTTCCGGGCTCGGCGCGCTTCCCACCCCGCGGCGCCGCTT-GGGTCAGTCACCGCTTTCCGGGTCGGAGACGCGCTCGGCCGCGGAGGCCTCCTCAGTCGCCCCAGTGAGGCCCCCGAACCCCTggcccgggtccccgggtcggcgccgcgggggcgggcccgcTCCTGCCGTGGGGCTGGCGGCCGCGGTGTGGAGTGCGCGCCTCGAACAAGTGCTGCGCGCGCGAGGGAGCGGTTCTCC-GGGGCCGACCCGGGCGGTAAACACGTCGGGCCGCGCCCGCCTGCCGGGGCCGTTCTGCGCCTCCTCGGGGGCGCCGCCGGGCTGAAACCGCGCGGGTCTGAGGCGAGCGGCCCAGGAGACCTGTGCGGTCCTCACGCACTTTGCGACCATTGCAGCTGGCTCAACTTGCAGCTATATCTTGAGAGCAAACA----AAACAAAACACTTTTTTTTTTTTTTTGTAAGTATGGCTCACTGCCTTTTTTTTTTTTTGCAAAGCCAACCAGTTTGTGAAGTTG-AAAAAGGAAAAACCCTCAACG------------------TC----CCCCCCCCC------TTTTATTTTAAA-TCAAGAAAGGGGATAGATAGGTTTGTTTTGTTTTGGAA---GTTCTTACAGTCGAGTGATACCGTCGGGTTTAATTTTCTAGGTCCTACTGTGAACTCAGGAATTCGCAGTGAAAGTTGGATTGAACTTTATTTTGGTGTTCATTCTTTGCTGTGACACTCCTTATTGAAGTTATTTGGAGAGTTTTACTGCTTCAGTACAGTAAAAACTGTACTGTGCCTTT----TGTTGTTGTTGTTGTTGCTACTCGCCCTCACCCGCCCCCCCCACAACTGTTTTATTTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCGTTGGATTGCCCAGATGAGGACAAAAGTTGCAGTTCTTAAAAGGTCATTATTAGCAAGTTTGTGAAGGAGCTGACATCAGTTGAGATAAATCAGTGTTCCCGTTCTTGTATTCCATCGTGTACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTTGTCAAGTTTTGGGTGCTCGTATCCCAGTGAATTTGGTTCTCGTGGCTTATGAGATGAACGTAATTCTGTTTGAGTTTCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTG------GAAGAAAATGTCCAGAGTGTCATTTA
i calJac3.chr10                 C 0 I 3
e ponAbe2.chr15                  17582735 1078 -  99152023 I

a score=639231.000000
s hg38.chr15_KI270850v1_alt         66743 310 +    430880 TTAACTTCAGTTGTAGTCCTTTACCTT-ACCTTCTGCT-AAATGAAAAAGAAAAATTTGACAAAT-ACTGTGTGCGTCAGTTTGCTCTGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCCCTTTTAAACTACAGAGCCACTTGTAGGATTCACAATACTCACTCAATGGCTTCCCTTCCTGGCAgtgtggttttgtgtgtgtgtgtg
s panTro4.chr15_GL392289_random     69795 310 -    187897 TTAACTTCAGTTGTATTCCTTTACCTT-ACCTTCTGCT-AAATGAAAAAGAAAAATTTGACAAAT-ACTGTGTGCGTCAGTTTGCTCTGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCCTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCCGTTTTAAACTACAGAGCCACTTGTAGGATTCACAATACTCACTCAATGGCTTCCCTTCCTGGCAGTGTGGTTTTGTGTGTGTGTGTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17583813 308 -  99152023 TTAACTTCAGTTGTATTCCTTTACCCTAACCTTCTGCTAAAATGAAAAATAGAAATTTGACAAAC-ACTGTGTGTGTCAGTTTGCTCTGAGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGCTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTAT-AAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAA---TCTTCAGGCACAGGCATTGCCCTTTTAAACTACAGAGCCACTTTTAGGATTCACAATCCTGGCTCCATGGCTTCCCTTCCTGGTtgtgtggttgtgtgtgtgtgtgtg
i ponAbe2.chr15                 I 1078 I 11
s nomLeu3.chr6                  102105117 310 + 121039945 TTAACTTCAGTTGTATTCCTTTACCTT-ACCTTCTGCT-AAATGAAAAATAAAAATTTGACAAAT-ACTGTGTGTGTCAGTTGGCTCTGAGTGATTTCTCATGCTAAGTGAGTCCCGTGGAGAAGCGTTCCTGGGCTTTTCTGCTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCACTTTTAAACTACAGAGCCACTTTTGGGATTCACAATATTCGCTCAATGGCTTCCCTTCCTGGTtgtgtggttttgtgtgtgtgtgtg
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106470253 300 - 171882078 TTAACTTCAGTTGTGTTCCTTTACCAT------CTGCT-AAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGGGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCGATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTTAAACTACAGAGCCAGTTTTAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGT--TGTGTGTGTG----
i macFas5.chr7                  I 3 C 0
s papAnu2.chr7                  102445921 302 - 162156779 TTAACTTCAGTTGTATTCCTTTACCAT------Ctgct-aaatgaaaaagaaaaatttgagaaataactGTGTATGTCAGTTTGTTGTGAGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGTGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAAAACTGTAGAGCCAGTTTTAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGgttgtgtggttgtgtgtgtgtg----
i papAnu2.chr7                  I 3 C 0
s chlSab2.chr29                  20313748 300 -  24206276 TTAACTTCAGTTGTGTTCCTTTACCAT------CTGCT-AAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGAGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAGAACTATAGAGCCAGTTTTAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGT--TGTGTGTGTG----
i chlSab2.chr29                 I 3 C 0
s calJac3.chr10                 113948712 290 - 132174527 TTAACT-------TGTTCCTTTACCAC------TTGCA-AATGAAAAAAGAAAAATTAGAGAAAT-ACTGTGTGTGTCAGTTTGCTTTGAGTGATTTCCCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTCTC-----TGGTGGGCCTTGTGTTATAAAACTAACTTTCTTCGCCTGATGAAACTAAAGACAAATTTTCTTCAGCTACAGACATTGCACTTTTAAAAC-TAACGTCACTTTTAGAATTCAGAATATTCGCTCGATGGCCTTCCTTCCTGGTTTTGTGGTTGTGTGTGTGTGTG--
i calJac3.chr10                 I 3 C 0

a score=40231.000000
s hg38.chr15_KI270850v1_alt         67053 28 +    430880 attgtgGGGAAGGAGGCTGACAG----AGGTT
s panTro4.chr15_GL392289_random     70105 28 -    187897 ATTGTGGGGAAGGAGGTTGACAG----AGGTT
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102105427 28 + 121039945 attgtgGGGAAGGAGGTTGACAG----AGGTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106470553 30 - 171882078 ATTGTGGGGAAGGAGGTTGGTTGAC--AGGTT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102446223 30 - 162156779 attgcgGGGAAGGAGGTTGGTTGAC--AGGTT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20314048 32 -  24206276 CTTGTGGGGAAGGAGGTTGGTTGACAGAGGTT
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113949002 28 - 132174527 ATTGTGGAGGAGGAGGTTGACAG----AGGTT
i calJac3.chr10                 C 0 C 0
e ponAbe2.chr15                  17584121 11 -  99152023 I

a score=567472.000000
s hg38.chr15_KI270850v1_alt         67081 251 +    430880 GGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTA---ACAACATAACGTGACGAGGGCACCAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTGTAGGATTTCTCACAGTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATACTATAAATGGActcctcctctagtcctttaactccttgagggctgtgatagaccttatttaactttgtaccct
s panTro4.chr15_GL392289_random     70133 251 -    187897 GGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTA---ACAACATAACGTGACGAGGGCACCAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTGTAGGATTTCCCACAGTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATACTATAAATGGActcctcctctagtcctttaactccttgatggctgtgatagaccttatttaactttgtaccct
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17584132 254 -  99152023 GGAAGGGATTGTCAGGGAGG--GACATAATGTAAGCAAGTACTACTTACAGCATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATACTGTAGGAACTATTGTTTTAGGATTTCTCACAGTTCATTTGCCTTGACTAAACGATAACTGCACACATACTATACTATAAATGGActcctcctctaatcctttaactccttgagggctgtgatagaccttatttagctttgtaccct
i ponAbe2.chr15                 I 11 C 0
s nomLeu3.chr6                  102105455 250 + 121039945 GGAAGGGATTGTCAGGGAGG--GACATAATGTAAGCAAGTGCTGCTTACAACATAATGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATACTGTAGGTGCTA---TTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATAGTATAAATGGActcctcctctagtcc-ttaacttcttgagggctgtgatagaccttatttagctttttaccct
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106470583 253 - 171882078 GGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTTACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTGCTGTGATAGACCTTACTTAGCTTTGTACCCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102446253 253 - 162156779 GGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTGTTTACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTACCCTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGACTCCTCCTCTAGTTC-TTAACTCCTTGAGTGCTGTGATAGACCTTACTTAGCTTTGTACCCT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20314080 253 -  24206276 GGAAGGGATTGCCAGGGAGG--GACACAATGTAAGCCAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTGTAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTGCTGTGATAGACCTTACTTAGCTTTGTACCCT
i chlSab2.chr29                 C 0 I 18239
s calJac3.chr10                 113949030 247 - 132174527 AGAAGGGATTGTCAGGGAGGGAGACATAATGTAAACAAGTACTACTTACAGCATAACGTCACAAGTACACCAGTTGCTTTCCTTCCCTGGGCTGTGATGGCGTGTTACACTGTAGATACAATTGTTTTAGGATTTCTCACACTTCATCTGCCTTGACTAAATGGTAACTGCACACATACTG------AAATGGA---CTCCTCTAGTCCTTTAACTCCTTGAGGTCTGTGATAGACCTTATTTAGCTTTGTACCCT
i calJac3.chr10                 C 0 C 0

a score=1209592.000000
s hg38.chr15_KI270850v1_alt         67332 574 +    430880 ctttgccagt----ggttttaacatagtgcaggcccggtatgtgtttgaattgggtaaatTACTTTTACTGCCTAGTGGTAGCTGGTGTACACAGGAGAGGGCCACCAACTCTGGGGACTTGTCCAAAATGACAATTCACTTGCAGATCTCTGATGAAATTTACTTTAAAAGGATTTCTAACC---TTTTTTT--------TAATCTGTCGGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTTAACAAGAGATTCCGATTTAGAAATCTG-------T--CCCC-C-CTTTTGGTGAAAttctta-ttttttttagagtcagaatcttcactgttgcccagttgtct----ccccgggacccaagccgtcttcccacctcagcctcccacagtactggaattacaggcgtgagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTGCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtacgccctttggagctaggtagagttcagatccccacatttccattgagtagttgcatagcctctcagagcttcagcttccta
s panTro4.chr15_GL392289_random     70384 573 -    187897 ctttgccagt----ggtcttaacatagtgcaggcacggtatgtgtttgaattgggtaaatTACTTTTACTGCCTAGTGGTAGCTGGTGTACACAGGAGAGGGCCACCAACTCTGGGGACTTGTCCAAAATGACAATTCCCTTGCAGATCTCTGATGAAATTTACTTTAAAAGGATTTCTAACC---TTTTTTT--------TAATCTGTCGGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTTAACAAGAGATTCCGATTTAGAAATCTG-------T--CCCC-C-CTTTTGGTGAAATTATTA--tttttttagagtcggaatcttcactgttgcccatttgtct----cctggggacccaagccgtcctcccacctcagcctcccaccgtattggaattacagacgtgagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTGCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaagaaagtacgccctttggagctaggtagagttcagatccccacatttccattgagtagttgcatagcctctcagagcttcagcttccta
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17584386 575 -  99152023 ctttgccagt----ggtcttaacatagtgcaggcacagtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGTGTACACAGGAGAGAGCCACCAACTGTGGGGGCTTGTCCAAAATGACGGTTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAACCTTTTTTTTTT--------TAATCTGTCGGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTACTCTAAGGATTTTAACAAGAGATTCCGATTTGGAAATCCG-------TCCCCCC-C-CTTTTGGTGAAATTATTA--tttttttagagtcggaatcttcactgttgcccagttgtct----ccctgggacccaagccatctttccacctcagcctcccacagtgttggaattacaggcgtgagccaccctacccagcTGGTGAAATTATTAAAATT--------------GTGAAAACTCTCCCCCCATTTTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtataccctttggagctaggtagagttcagatccccacatttccattgagtagttgcatagcttctcagagcttcagcttccta
i ponAbe2.chr15                 C 0 I 1324
s nomLeu3.chr6                  102105705 575 + 121039945 ctttgccggc----agtcttaacatagtgcaggcacggtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGAGAGCCACCAACTCTGGGGACTTGTCCACAATGACAGTTCACTTGCAGATCTCTGATGAAATTTACTTTAAAAGGATTTCTAACC--TTTTTTTT--------TAATCTGTCGGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTTAACAAGAGATTCCGATTTTGAAATCTG-------T--CCCC-CGCTTTTGGTGAAATTACTG--tttttttagaatcggaatcttcgctgtttcccagttgtct----ccccgggacccaagctgtcctcccacctcagcctcccacagtgttggaattacaggcaggagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtgtaccctttggagctaggtagagttcagatccccacatttccattgactagttgcatagcctttcagagcttcagcttccta
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106470836 575 - 171882078 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAAAGAGCCACTAACTCTGGAGACTTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAAC---------TTAAAAAAAAAAATCTGTCGGTTATTACTTATTTAAAGAAGTGGGGCTTAACTGGTGCTCAAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCG-------T--CCCC-CCCTTTTGGTGAAACTATTA--tttttttagagtcggaatc-tcactgtttcccagttgtct----gccgggaacccaacccgtcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacatttccattgactagttgcacagtctctcagagcttcagtttccta
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102446506 574 - 162156779 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTgggtaaattatttttactgcCTAGTGGTAGCTAGCGTACACAGGAGAGAGCCACTAACTCTGGAGACTTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGAAATTTactttaaaaggatttttaac---------tt-aaaaaaaaaatctatcggttattatttatttaaagaagtgGGGCTTAACTGGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCG-------T--cccc-cccTTTTGgtgaaactatta--tttttttagagtcgGAATC-TCACTGTTTCCCAGTTGTCT----GCCGGGAACCCAAcccgtcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccACCCAGCTggtgaaattattaaaattg-----------tagTGACAACTCTCCCTCCATtgtgaaattgg---aaaaaaattagacattttaGTAAAACGTACACCCTTTGAAGCTAGGTAGAGTTCAGATCCCCACATTTCCATTGACTACTTGCATAGTCTctcagagcttcagtttccta
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4012262 576 +  24206276 gtgtgccagt----agtcttaacatagcgcaggcacagtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAGAGAGCCACTAACTCTGGGCACTTGTCCAAAATGACAATTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGAATTTCTAACC---TTTTTTT--------AAATCTGTCAGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCCCTAAGGATTTCAACAAGAGATTCTGATTTAGAAATCTGCCCCCCCT--CCCC-CCGTTTTGGTGAAATTATTA--tttttttagagtcggaatc-tcactgtttcccagttgtct----cccggggacccaagccatcctcccacctcagtctcccacagtgtttgaattacggatgtgagccaccccacccaacTGGTGAAGTTATTAAAATTG-----------TAGTGACAACT----CTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTAAAAaaaacgtacaccctttggagctaggtagagttcacatccccacatttccattgactagttgcatagcctctcagagcttcagtttccta
i chlSab2.chr29                 n 18239 C 0
s calJac3.chr10                 113949277 594 - 132174527 CTTTGTCAGTAAAGAGTTTTAACATAGTGCAGGCAGAGTATGTATTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGGGAGCCACTAACTCTGGGGACTTGTTCAGAATGACAGTTAACTTGGGGCTCTGTAATGAAATGTATTTTAAAAGGATTTTTAGCC-------TTT--------TAAAAAATCTGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCC-------A--CCCCACCCCTTGGGTGAAATTAttttttttttttagagccagagta-tcactgtttcccagctttctctaactcctggacccaagccatcctcccacctcagcctcccacagtgttggaattacaggcgtgatccaccccacccagcTGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAACTCTCCCTCCATTGGGAAATTGGAAAAAAAAAATGAGAAGTTTTAgaaaaaagtacatgctttggagctaggtaaagttcagatccgcacatttccattgaccagttgcatagcctgtcagagcgtcagtttccta
i calJac3.chr10                 C 0 C 0

a score=1533581.000000
s hg38.chr15_KI270850v1_alt         67906 704 +    430880 ctccttaagggttagtaacatgctttgcagtgttgttaggaatcagtgaaactgtgtgagatacttaactgcagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCATTCTGAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCA-TAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCAAAGG-TGTCAGATGAACTGAAGGATAATGGAAACAATAGCAAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTT-GCAGAGT-ACTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAGTGAGTTCCAACTTTCCTTATTTT------ACCTTAGTCTTGACAAATAACAAGTATGGATTATGTCTGTATTTCTCCGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGT--AGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTTACACTAGCTGATGGAGTAGATACATTCTAG
s panTro4.chr15_GL392289_random     70957 705 -    187897 ctccttaagggttagtaacatgctttgcagtgttgttaggaatcagtgaaactgtgtgagatacttaactgcagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACGTGACTTAAGCATTCTGAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCATTAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCACAGG-TGTCAGATGAACTGAAGGATAATGGAAACAATAGCAAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGCGAGTGGGACTT-GCAGAGT-ACTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAGTTAGTTCCAACTTTCCTTATTTT------ACCTTAGTCTTGACAAATAACAAGTATGGATTATGTCTGTATTTCTGAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGT--AGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTCAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTTACACTACCTGATGGAGTAGATACATTCTAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79937221 704 +  99152023 CTCCATAAgggttagtaacatactttgcagtgttgttaggaatcagtgaaactgtgtgagatacttaactgcagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATATGTTTTTACATGACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCA-TAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCAAAGGATGTCAGATGAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGGCAGAGTGGCTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAGTTAGTTCCAACTTTCCTTATTTT------ACCTTAGTCTTGACAAAT---AAGTATGGATTATGTCTGTATTTCTCACACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTAGTTCACT--ACAGACATGAGCAAATCACTCTCTTCCCCTTCAAGATAACACTTTACAGGCGCCACCATTTGCACAACAAAGCATTGATTTAACGCAGCTATACTAGCACAGTTTAGAATACTTCCATTCCCCCATGGAGTAGATACCCTCCAG
i ponAbe2.chr15                 I 10 C 0
s nomLeu3.chr6                  102106280 699 + 121039945 ctccataagggttagtaacatgctttgcagtgttgttagcaatcagtgaaactgtgtgagatagttaactgcagtatctaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCATTCTTAAAGGTCTGATGCTTCTGAGTATGGAGGCTTAGCTACTTCTTTCA-TAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCAAAGG-TGTCAGATGAACTGAAGGATAATGGAAACAATAGCGAATGTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTT-GCAGAGTGGCTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGA------AAGTTAGTTCCAACTTTCCTTATTTT------ACCTTAGTCTTGACAAATGACAAGTATGGATTATGTCTGTATTTCTCAGACTTGTTTAAGATAGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGT--AGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTTACAGTACCAGATGGAGTAGATACATTCTAG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106471411 699 - 171882078 ctccataaaggttagtaacatgctttgcagagtttttagggatgaatgaaac--tgtgaggtacttaacttcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGGTTTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTATTTCTTTCA-TAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATAGGAATGCATTTCTT---AGG-T--CATGTAAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGAGACTC-GCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCGGTACATCAGTCCTAAGAGGCTATGAGGTACTTCCAACTTTCTTTATTTT------ACCTTAGTCTTGACAAATAACAAGTGTGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTGGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAACCTGCCACCATTTACAGAAGAAAACAGTGATTTAAAGCAGCTATACCAGCACAGTTTAGAATACTTACAGTACCCTATGGAGTAGATACATTCTAG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102447080 699 - 162156779 CTCCATAATGGTTAGTAACATGCTTTGCAGAGTTTTTCGGGATGAATGAAAC--TGTGAGGTACCAAACTTCAGTATTTAACATGAAGTAGGTAGCTATTTCCTGGTAGCTGTAATGATAATAATTTTGATACGTTTTTACGTGACTTAAGCTTTCTTAAAAGTCTGATGCTTCTGAGTATACAGGCTTAGCTAATTCTTTCA-TAAAGAAAGGGCCCTGAGACTCCTGAGTCTTATAGGAATGCATTTCTT---AGG-T--CATGTAAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGACTGAGACTC-GCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCCTAAGAGGCTATGAGGTAGTTCCAACTTTCTTTATTTT------ACCTTAGTCTTGACAAATAACAAGTGTGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTGGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTGCCACCATTTACAGAAGAAAGCAGTGATTTAAAGCGGCTATACCAGCACAGTTTAGAATACTTACAGTACCCGATGGAGTAGATACATTCTAG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4012838 697 +  24206276 ctctgtaagggttagtaacatgctttgcagtgttcttagaaatcagtgaaactatgtgaggtacttaactgcagtatctaacgtggaataagtagctatttcctggtagctGTCATGAGAATAATTTTGATACATTTTT-----ACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTAATTCTTTCA-TAAAGAAGGGGCCTTGAGACTTGTGAGTCTTATCTAAATCTGTTTCTTCAAAGG-TGCCAGATGAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTT-GCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTGTGTTATTTAGGAAACAGTGCGAGATGGATTGTTTTCAGTTCATCAGTCATAAGAGGATATGTG----TTCCAATTTTCTTTATTTT------ACCCTAGTCTTGACAAATAATAAGTGTGGAATATGTCTGTATTTGTCAGACTTGTTTAAGGTGGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTACCACCATTTACAGAAGAAAGCTGTGATTTAAATCAGTTATATTAGCAAAGCTTAGAATACTTATAGTACCAGATGGAATAGATACATTCTAG
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113949871 707 - 132174527 ccccctaagggttagtgacatgctttgcagtgttctcaggaataaatgaagctgtgtgaggtattt-actacagtacctaacacgaagtaggTAGCTATTTCCTCGTAGCTGTAATGATAATAATTGTGATACGTTTTTACATGACTTAAGCATTCTTAA--GTCTGATGCTTCTAAGTATAGAGGTTTAGCGATTTCGTCCA-TAAATAAGGGGCCCTGAGACTGGTGAGTCTTATCCAAATGCATTTCTC-AAAGG-TGCCAGATGAACTGAAGGATAATGGAAACAGTAGTGAGTTTATCTTCTCAGTCACCTGTTAGTCTTCCTTTGAGAGTGGGACTT-GCAGAGTGGCTTGGTAGGGTAGAGCTCTTTGTGGCTGTGGTATTTAGAAAACGGTGAGAGATGGATTGTTTTCAGTATATCAGTCATAAGAGGATATGAGTTAGTTCCAACTTTTTTTCCTTTTTTTTAACCTTAGTCTTGAAAAGTAATAAGTATGGATTATGTC--TATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGATGTTAACAGTGTTAGTTCAGTACATAGACATGAGCGAGTCACTTCTTTCCCTTTCAAGATAACACTTTAAAGGTGCCACCGTTTACAGAAAAAAGCAGCGATTTAAATCAGTTATACTAGTACAGTTTAGAATACTTACAGTACGAGATGGAGTAGATACATTCTAG
i calJac3.chr10                 C 0 C 0

a score=105310.000000
s hg38.chr15_KI270850v1_alt         68610 100 +    430880 AAATATTTACCTGTagtgggagttgaacagtg-agaacacacgg--acacagg-gaggggggaacatcacacactggggcctgttgggggttggggggctaggg
s panTro4.chr15_GL392289_random     71662 100 -    187897 AAATATTTACCTGTagtgggagttgaacagtg-agaacacacgg--acacagg-gaggggggaacatgacacactggggcctgttgggggttggggggctaggg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79937925 102 +  99152023 AAatatttacccgtagtgggagttgaacattgcccaacacccgg--acacttgcaaggggggaacatcatacactgctgtctgttgggggttgcggtgctaggg
i ponAbe2.chr15                 C 0 I 11
s nomLeu3.chr6                  102106979  99 + 121039945 AAATTTTTACCTGTagtgggagttgaacagtg-agaacacacgg--acacagg-gaggggggaacatcacacactggggcctgttggggg-tggggggctaggg
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106472110  96 - 171882078 AAATATTTACCTGTagtgggagttgaacagtg-agaacacatgg--acacaga-----ggggaacatcacacactggggcctgttgcggggtgtggggctaggg
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102447779  98 - 162156779 AAATATTTACCTGtagtgggagttgagcaatg-agaacacatggacacacaga-----ggggaacatcacacactggggcctgttgcgggGTGTGGGGCTAGGG
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113950578   0 - 132174527 C
e chlSab2.chr29                   4013535   0 +  24206276 C

a score=122777.000000
s hg38.chr15_KI270850v1_alt         68710 148 +    430880 gagggatagcattaggagaaatacctagtgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatataccccagaacttaaagtataataat-aagaaagaaaAAT
s panTro4.chr15_GL392289_random     71762 142 -    187897 gagggatagcattaggagacatacctagtgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatatacctcagaactt------taataat-aagaaagaaaAAT
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102107078 148 + 121039945 gagggatagcattaggagaaatacctgatgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacattctgcacatgtaccccagaacttaaagtataataat-aataaagaaaAAT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106472206 149 - 171882078 gcgggatagcattaggagaaatacctagtgtagatgacaagttgatgggtgcagcaaaccactgtggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatgtacgccagaacttaaagtataataataaaaaaagaaAAAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102447877 149 - 162156779 gcgggatagcattaggagaaatacctagtgtagatgacaagttgatgggtgcagcaagccactgtggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatgtacgccagaacttaaagtataataataaaaaaagaaaaat
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113950578   0 - 132174527 C
e chlSab2.chr29                   4013535   0 +  24206276 C
e ponAbe2.chr15                  79938027  11 +  99152023 I

a score=280881.000000
s hg38.chr15_KI270850v1_alt         68858 177 +    430880 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTT-----------------------------------------------------GAACTTAACAGATTGAGGGTAAACCTTTAAAAAATATATTTGGTCACACT--TACAGACTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
s panTro4.chr15_GL392289_random     71904 177 -    187897 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTT-----------------------------------------------------GAACTTAACAGATTGAGGGTAAACCTTTAAAAAATATATTTGGTCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102107226 176 + 121039945 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTT-----------------------------------------------------AAACTT-ACAGATTGAGGGTAAACCTTTAAAAATTATATTTGGTCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106472355 196 - 171882078 AAATATTTACCTGTTAAGGACATTTTCTGTATATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTAAACATTATGTTTGAT------------------------------------CAAACTT-ATAGATTGAGGTTAAACCTTTAAAAATTATATTTGGTGACACTTATACAGAGTTAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448026 194 - 162156779 aaatatttacctgTTAAGGacattttctgtgtattttattcCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTAAACATTATGTTGGAT------------------------------------CAAACTT-ATAGATTGCGgttaaacctttaaaaattatatttggtgACACT--TACAGAGTTAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4013535 193 +  24206276 AAATATTTACCTGTTAAGGACA-TTTCTATAGATTTTATTCCATTTTTCCATTAGTTTTCTGATGAAGAGATTGTAGTAAACCTTTAAAAATTATATTTGGT------------------------------------CAAACTT-ACAGATTGAGGGTAAACCTTTAAAAATTATATTTGATCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113950578 229 - 132174527 AAATACTTATCTGTTAAGGACA-TTTCTATATATTTTATTTCATCTGTTCATTAGTTTTTGTATGAAGAGATTATAGTGAACCTTTAAAAATTATATTTGATCACACAGATTGAGGGTAAAAACATTAAAAATTTGAACAAACTT-ACAGATTGAGGGTAAACCTTTAAATATTATATTTGATCACACT--TTGAGATTAAGGGTAAAGACATTCCTGACAAAGCTAGGCGAA
i calJac3.chr10                 C 0 C 0
e ponAbe2.chr15                  79938027  11 +  99152023 I

a score=26965.000000
s hg38.chr15_KI270850v1_alt         69035 34 +    430880 GACACTTGGAC-----------ttttttttttttttgagacggag
s panTro4.chr15_GL392289_random     72081 35 -    187897 GACACTTGGAC--------t--ttttttttttttttgagatggag
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102107402 38 + 121039945 GACACTTGGAC-----TCtt--ttttttttttttttgagatggag
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106472551 43 - 171882078 GAGACTTGGAAtttgttttt--gtttttttttttttgagaaggaa
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448220 38 - 162156779 Gagacttggaa-----tttt--ttttttttttttttgagaaggaa
i papAnu2.chr7                  C 0 C 0
s calJac3.chr10                 113950807 40 - 132174527 GAAACTTGGAC-----TTTTGATGTTCCACACTTTTGAGATTGAG
i calJac3.chr10                 C 0 I 31
e chlSab2.chr29                   4013728  0 +  24206276 C
e ponAbe2.chr15                  79938027 11 +  99152023 I

a score=157078.000000
s hg38.chr15_KI270850v1_alt         69069 190 +    430880 tctcgctctgtcacccaggctggagtgcagtagcacgatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgcctctcccgagtagctgggactacaggcacacgccaccatgcctgactaattttt-tatttttagtagagacggggtttcaccatattgaccaggctggtcttga
s panTro4.chr15_GL392289_random     72116 191 -    187897 tctcgctctgtcacccaggctggagtgcagtagcacgatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgcctctcccgagtagctgggactacaggcacacgccaccatgcctgactaatttttgtgtttttagtagagacggggtttcaccatattgaccaggctggtcttga
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102107440 191 + 121039945 tctgtccctgtcacccaggctggagtgcagtggcacgatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgtctctcccgagtagctgggactacaggcacgtgccactatgcctgactaatttttgtatttttagtagagacggggtttcaccatattggccaggctggtcttga
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106472594 191 - 171882078 tctcactctgtcacccaggctggagtgcagtggtgcgatcttggttcactgcaacctctgcctcccgggttcaagcgaatcttctgcctctgccgagtagctgggactataggcacgcaccaccatgtcttgctaacttttgtatttttagtagagctggggtttcaccatattggccaggatggtcttga
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448258 191 - 162156779 tctcacactgtcacccaggctggagtgcagtggtgcgatcttggttcactgcaacctctgcctcccgggttcaagcgaatcttcTGCctctgccgagtagctgggactataggcacgcaccaccatgtcttgctaacttttgtatttttagtagagctggggtttcaccatattggccaggatggtctcga
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113950847  31 - 132174527 I
e chlSab2.chr29                   4013728   0 +  24206276 C
e ponAbe2.chr15                  79938027  11 +  99152023 I

a score=94206.000000
s hg38.chr15_KI270850v1_alt         69259 76 +    430880 actcctgacctcgtgatccacccacctcagcctcctaaagtgctgggattacaggcatgagccactgcacccggcT
s panTro4.chr15_GL392289_random     72307 76 -    187897 actcctgacctcgtgatccacccgcctcagcctcctaaagtgctgggattacaggcatgagccactgcacccggcc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17586285 76 -  99152023 actcctgacctcgtgatccacccgcctcagcctcctaaagtgctgggatttcaggcgtgagccactgcacccggcC
i ponAbe2.chr15                 I 1324 C 0
s nomLeu3.chr6                  102107631 76 + 121039945 actcctgacctcatgatccacccgcctcagcctcctaaagtgctgggattataggcatgagccaccgcgcccagcc
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106472785 76 - 171882078 actcctgacctcgtgatccccccgccttggcctccgaaagtgctgggattacaggcatgagccaccgcgcctgTCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448449 76 - 162156779 actcctgacctcgtgatcctcccgccttggcctccgaaagtgctgggattacaggcatgagccaccgcgcctgtct
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113950847 31 - 132174527 I
e chlSab2.chr29                   4013728  0 +  24206276 C

a score=42014.000000
s hg38.chr15_KI270850v1_alt         69335 18 +    430880 GAAACTTGGACTTTTGAT
s panTro4.chr15_GL392289_random     72383 18 -    187897 GAAACTTGGACTTTTGAT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17586361 18 -  99152023 GAAACTTGGACTTTTTAT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102107707 18 + 121039945 GAAACTTGGACTGTTGGT
i nomLeu3.chr6                  C 0 I 17438
s macFas5.chr7                  106472861 18 - 171882078 GAAACTTGGACTTTTGAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448525 18 - 162156779 gAAACTTCGACTTTTGAT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4013728 18 +  24206276 GAAACTTGGACTTTTGAT
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113950878 18 - 132174527 GAAACTTGGACTTTTGAT
i calJac3.chr10                 I 31 C 0

a score=756697.000000
s hg38.chr15_KI270850v1_alt         69353 465 +    430880 GTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCCCTCTCTCTC--TCTTTCCCAGGTTAGGCTGTCTTATTGCTGTAAATGGGGAGAGAAGAGAAAGCCGTGGGTGGAAGAAAG--TGTTTCATggcctggtgcggtggctcatgcctgtaa---------------------------------tcccagcactttgggaggccgaggcgggtggatcacttgagttcaggagttcaagaccagcctggccaacatggtgaaaccccgtttctactaaaaacagaaaaattagctgggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccaggagatggaggttgcagtgagccgagatt------gcaccacttcactccagcctggtcgacagagcgagaccttgtctc--aaaaaaaaaa
s panTro4.chr15_GL392289_random     72401 500 -    187897 GTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCCCTCTCTCTC--TCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCCGTGGGTGGAAGAAAG--TGTTTCATGGCCTGGTGCGGTGGCTCATGCCTGTACTTTGGGAggccgaggcgggtgggtcacttgagttcccagcactttgggaggccgaggcgggtgggtcacttgagttcaggagttcaagaccagcctggccaacatggtgaaaccccgtttctactaaaaacagaaaaattagctgggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccaggagatggaggttgcagtgagccgagatt------gcaccccttcactccagcctggtcgacagagcaagaccttgtctcaaaaaaaaaaaa
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17586379 473 -  99152023 GTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTAATGGGGACAGGCGTCTATTTGGAAGTAGCTTCC--CTCTCTC--TCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCCGTGGATGGAAGAAAGTTTGTTTCATggcctggcgcagtggctcatgcctgtaa---------------------------------tcccagcactttgggaggccaaggtgggtagatcacttgagttcaggagttcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaacagaaaaattagctgggcatggtggcaggcacctgtaatcccagctacttgggagactgaggcaggagaatcgctt-gaacccgggagatggaggttgcagtgagccaagattcactccacttcacttcactccagcctggtcgacagagcgagatctcgtctcaaaaagaagaaa
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106472879 469 - 171882078 GTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGACATCCATTTGGAAGTAGCTTTCCTCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgtggtggctgatgcctgtaa---------------------------------tcccagcactttgggaggccgaggtgggtgggtcacttgagttcaggagttcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatagaaaaattagctgggcatggtggcggtcacctgtaatctcagctgcttgggaggctgaggcaggagaattactt-gaacccggtcagtggaggttgcagtgagctgagatt------gcaccacttttcttcagcctggtggacagagcaagacctcgtctc--aaaaaagaag
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448543 469 - 162156779 GTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACGGGCATCCATTTGGAAGTagcttccctctctctctgtctttcccaggTTAGGCTCTCTTACTGCTGTAaatggggagagaagagaaagctgtGGGTGGAAGAAAGTTTGTTTcatagcctggcacagtggctgatgcttgtaa---------------------------------tcccagcattttgggaggctgaggcgggtggatcacttgagttcagaagttcaagaccagcctggccaacatggcgaaaccctgtctctactaaaaatagaaaaattagctgggcatggtggcggtcacctgtaatctcagctacttgggaggctgaggcaggagaattgctt-gaacccagtcagtggaggttgcagtgagctgagatt------gcaccacttcacttcagcctggtggacagagcaagacctcgtctc--aaaaaagaag
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4013746 469 +  24206276 GTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCGTCCATTTGGAAGTAGCTTCCCTCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgcagtggctgatgcctgtaa---------------------------------tcccagcactttgggaggccgaggcgggcagatcagttgaggtcaggagatcaagaccagcctggccatcatggtgaaaccccatctctactaaaaatacagaaactaccccagcagggtggcggatgcctttaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccgggaggtggaggttgcagtgagccgagatc------atgccactgcactccagcctgggcaacagagtgagactccatctc--aaaaaaaaaa
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113950896 469 - 132174527 GTTCCCTTCATTTAACGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGAGGGGGACAGGCGTCCATTTGGAAGTAGCTTCCCTCTCTCACTCTCTCTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTTGGTGGAAGAAAGTTTGTTTCATggcctggctcagtggctcacgcctgtaa---------------------------------ttgcagcattttgggaggccgaggtcagcggatcacttgaggtcaggaattcaagacccgcctgggcaacatggcgaaaccctgtctctactgaaaatacaaaaattagccaggcgttgtggcagacg-gtgtaatcctggctactggggaggctgaggcaggaaaatcgcttccaacttgggaggtgaaggttgcagtgagccgagatc------acgccactgcactccagcctatgtgacagagtgtgactctatttc--aaaaaaGGAA
i calJac3.chr10                 C 0 T 89514
e nomLeu3.chr6                  102107725 17438 + 121039945 I

a score=1525.000000
s hg38.chr15_KI270850v1_alt         69818 13 +    430880 aaaaaaaaaaa--a-----a
s panTro4.chr15_GL392289_random     72901 13 -    187897 aaaaaaaaaaa--a-----a
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17586852 18 -  99152023 aaaaaaaaaaa--aaagata
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106473348 11 - 171882078 aaagaaagata---------
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102449012 11 - 162156779 aaagaaagata---------
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4014215 13 +  24206276 aaaaaaaaaaaaa-------
i chlSab2.chr29                 C 0 n 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e nomLeu3.chr6                  102107725 17438 + 121039945 I

a score=595910.000000
s hg38.chr15_KI270850v1_alt         69831 715 +    430880 gtgtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgaaccaagcgattatcccacctcagcctcccaagtagctgggatcacatgcatgcactgccatgcctggctaa-tttttttatttttgtagagacagggtctctctatgttgcccagcctggtctcaaactcccgggatgaagcaatcctcccaccatggtctcccaaagtgtagggcttacaggcgtgag-------------agcctgctggggtttttgattgacattgcattgaaactggaaatcagttaggaggcaactgacattttaataatgagccatgaacatggtatatctatttatttagaccttcttagatttttcgtcagtgttttgtagtttttagcagttggatcttgcttgtattttgtaatcttacacatttatttcatgt-ttgtggtactgttgtgaatgatacttctcaatttccagttggtgattgctagtatataggaaggtgattttatgttatatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttttgtagatttttggaattttgtgcatagacagtaatgtcactggcaaa--taagggcagtttaatttctttgttttcactttgtatgcttttatttcc------t-----tttttttttttGAGACGGAGTTTCTCTCTTGTTGCCCAG
s panTro4.chr15_GL392289_random     72914 731 -    187897 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgaaccaagcggttatcccacctcagcctcccaagtagctgggatcacatgcatgcaccgccatgcctggctaattttttttatttttgtagagacagggtctctctatgttgcccagcctggtctcaaactcccgggatgaagcaatcctcccaccatggtctcccaaagtgtagggcttacaggcgtgagagccaccatgcccagcctgctggggtttttgattgacattgcattgaaactggaaatcagttaggaggcaactgacattttaataatgagccatgaacatggtatatctatttatttagaccttgttagatttttcgtcagtgttttgtagtttttagcagttggatcttgcttgtattttgtaatcttacacatttatttcatgt-ttgtgatactgttgtgaatgatacttctcaatttccagctggtgattgctagtatataggaagatgattttatgttatatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttttgtagatttttggaattttgtgcatagacagtaatgtcactggcaaa--taagggcagtttaatttctttgttttcactttgtatacttttatttcc----ttt-----tttttttttttgagacggagtttctctcttgtcgcccag
i panTro4.chr15_GL392289_random C 0 I 10804
s ponAbe2.chr15                  17586870 727 -  99152023 gggtcccactcagttgcccaggctgaaacacagtggcaggatcactgctcactgcagccttgaaccaagcaattatcccacctcggcctcccaagtagctgggatcacatgcatgcaccaccatgcctggctaa-tttttttatttttgtagagacagggtctctctatgttgtccaggctggtctcaaactcccgggatgaagcagtcttcccaccatggtctcccaaagtgtagggcttacaggcgtgag--ccaccatgcccagcctgctggggtttttgattggcattgcattgaagctggaaatcagttaggaggcaattgacattttaataatgagccatgaacatggtatatctatttagttagaccttcttagatttttcttcagtgttttgtagtttttagcaattggatcttgcatgtattttgtaatcttacacatttatttcatgtgttgtggtactgttgtgaatgatacttctcaatttccagttggtcattgctagtatatatgaagatgattttatgttatatgctgatcttggattctacaaccttgctaaa--catttttagtactagaagcttttttgtagatttttggatttttgtgcgtagacagtaatgtcactagcaaa--taagggcactttaatttcttcg-tttcactttgtatacttttttttttt---ttt-----tttttttttttgagacagagtttctctcttgttgcccag
i ponAbe2.chr15                 C 0 I 11549
s macFas5.chr7                  106473359 731 - 171882078 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaa-tttttttgtttttgtagagagaggatctctctatgttgcccaggctgctcttaaactccttggatgaagtgatcctctcaccgtgaactcccaaagtgtagggcttacaggtgtgag--ccaccatgctcagcctgctggggtttttgattggcattgcattgaagctggaaatc----aggaggcaattgacgttttaataacgagccatgagcatggtatatctatttatttagacctttttagatttttcatcagtattttgtagtttttagcaattggatcttgcatgtattttgtaatcttatatatttatttcatgggttgtgatgctgttgtgaatgatacttttcaatttccagttggtcgttgctaggctataggaagatgattttatgttacatgctgaccttggattctacaaccttgctaaactcatttttagtgctagaagcttttttgtaaatttttggaattttgtgcatggacagtaatgtcactgccaaatttaagggcagtttaatttcttcattttcactttgtatacttttattttctttcttt-----tttttttttctgagacgcagtttctctcttgttgcccag
i macFas5.chr7                  C 0 I 30845
s papAnu2.chr7                  102449023 734 - 162156779 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaa-tttttttgtttttgtagagagaggatctctctgtgttgcccaggctggtcttaaactccttggatgaagtgatcctctcatcgtgaactcccaaagtgtagggcttacaggtgtgag--ccaccatgctcagcctgctGGGGTTTTTGATTGGCATTGCATTGAAGCTGGAAATC----AGGAGGCAATTGACGTTTTAATAACGagccatgagcatggtatatctatttatttagacCTTCTTAGatttttcatcagtattttgtagtttttagcaaTTGGATCTTGCATGTATTTTGtaatcttatatatttatttcatgggTTGTGATGCTGTTGTGAATGATACTTTTCAATTTCCAGTTGGTCATTGCTAGGATATAGGAAGATGATTTTATGTTACATGCTGACCTTGGATTCTacaaccttgctaaactcattttTAGTACTAGAagcttttttgtagatttttggAATTTTGTGCATAGACAGTAATGTCACTGGCAAA--TAAGGGcagtttaatttcttcattttcactttgtatacttttattttctttctttctttctttctttttctgagacgcagtttctctcttgttgcccag
i papAnu2.chr7                  C 0 I 16541
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   4014228   0 +  24206276 I
e nomLeu3.chr6                  102107725 17438 + 121039945 I

a score=0.000000
s hg38.chr15_KI270850v1_alt         70546 12 +    430880 TAAATTAGCCCA
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   4014228  0 +  24206276 I
e papAnu2.chr7                  102449757 16541 - 162156779 I
e macFas5.chr7                  106474090 30845 - 171882078 I
e nomLeu3.chr6                  102107725 17438 + 121039945 I
e ponAbe2.chr15                  17587597 11549 -  99152023 I
e panTro4.chr15_GL392289_random     73645 10804 -    187897 I

a score=103509.000000
s hg38.chr15_KI270850v1_alt         70558 400 +    430880 TGTAAATATTTCTGTTTGTATCTCTTGAAAGTAAAGACTCTTTTAACCATGGATGAGTGTCTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATTAAGGGAAAAATGGGGTTGGATTTCAAATGCCAGGACCTGTCTACTGGGTTTGTGATTTGTTATTCTCTAAAGTTGTAGCTCTTAAAACAAAGAAAGGAGTGAGTTTGGCCTATTCATTAACTTTTACTCTTTAGACAGTTCAAATGTTTATTGAGTTCTTCTACAGGCCGAGCCCTGCCTTCTTCATGCTTACCAAGAAGCATTTTTACGCGGTTTCTCTAATGTTTGGGTGGACGGTACCTCACTAAGTTGTTTTTCACGCACGTGCGTGCTCGTTCCTG
s panTro4.chr15_GL392289_random     84449 399 -    187897 tgtaaatatttctgtttgtatctcttgaaggtaaagactcttttaaCCACGGATGAGTGTCTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATTAAGGGAAAAATGGGGTTGGATTTCAAATGCCAGGACCTGTCTACTGGGTTTGTGATTTGTTATTCTCTAAAGTTGTAGCTCTTAAAACAAAGAAAGGAATGAGTTTGGCCTATTCATTAACTTTTCCTCTTTAGACAGTTCAAATGTT-ATTGAGTTCTTCTACAGGCCGAGCCCTGCCTTCTTCATGCTTACCAAGCAGCATTTTTACGCGGTTTCTCTAATGTTTGGGTGAACGGTACCTCACTAAGTTGTTTTTCACACACATGCGTGCTCGTTCCTG
i panTro4.chr15_GL392289_random I 10804 C 0
s ponAbe2.chr15                  17599146 393 -  99152023 tgtaaatatt--tgtttgtatctcttgaaggtaaagactcttttaACCATGGATGAGTGTCTTGATCAAATCAACATGGCTTGTTCATGTTGATACCATTTGCTCAGAAGGGAAAGATTAAGGGAAAAATGGGGTTGGATTTCAAATGCCAGGACCTGTCTACTGGGTTTGTGATTTGTTATTCTCTAAAGTTGTAGCTCTT-----AAAGGAAGGAGTGAGTTTGGCCTATTCATTAACTTTTCCTCTTTAGACAGTTCAGATATTTATTGAGTTCTTCTACAAGCTGGGCCCTGCCTTCTTCATGCTTACCAAGAAGCATTTTTATGCAGTTTCTCTAATGTTTGGGTGAACGGTACCTTACTAAGTTGTTTTTCACACACGTGCGTGCTAGTTCCTG
i ponAbe2.chr15                 I 11549 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   4014228   0 +  24206276 I
e papAnu2.chr7                  102449757 16541 - 162156779 I
e macFas5.chr7                  106474090 30845 - 171882078 I
e nomLeu3.chr6                  102107725 17438 + 121039945 I

a score=881104.000000
s hg38.chr15_KI270850v1_alt         70958 537 +    430880 AAGAGTCCTGTCCAGGTGCCCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGCCGTTTCCCTATAGAACGTG-CCCTGACCTCCACCCCTTAACCCTAACCAATTTGCCTTTACATGTCTGACCATCCATCAAGGCTCTTTTGGGTCATATTCAGTCCATGTTGATATTTCCCCTTCCTCCCTTCTTTAGTCCTTACTATTTTTGCTTTGGTCATGTTTTCTTACACTGTATTCTGTAAGCCTGTTT-----AATTTTTTT---ATGGTGGCAGGGGAAAATATTTCATAATTATGCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTATGAGCCTATTCTAGCTATATTGTGCTTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATCAAGAGCTTGTCATGGATAGTACAAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
s panTro4.chr15_GL392289_random     84848 537 -    187897 AAGAGTCCTGTCCAGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGCTGTTTCCCTATAGAATGTG-CCCTGACCTCCACCCCTTAACCCTACCCAATTTGTCTTTACATGTCTGACCATCCATGAAGGCTCTTCTGGGTCGTATTCAGTTCATGTTGATATTTCCCCTTCCTCCCTTCTTTAGTCCTTACTATTTTTGCTTTGGTCATGTTTTCTTACGCTGTATTCTGTAAGCCTGTTT-----AATTTTTTT---ATGGTGGCAGGGGAAAATATTTTATAATTATGCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTGTGAGCCTATTCTAGCTATATTGTGCTTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATCAAGAGCTTGTCATGGATAGTACAAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17599539 506 -  99152023 AAGAGTCCTGTCCAGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGCTGTTTCCCTATAGAATGTG-CCCTGACCTCCACCCCTTAACCCTACCCAATTTGCCTTTACATGTCTGACCATCCATCAAGGCTCTTCTGGGTCATATTCAGTCCATGTTGCTATTTCTCCTTCCTCCCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATGTTTTCTTACACTGTATTCTGTAAGCCTGTTT-----AATTTTTTT---ATGGTGGCAGGGAAAAATATTTTATAATTATTCTTTGTGCTTTTTATCTTCCACTCAATTAATGCTTGGTAAATATTTGTTTTGTTGAGTAAATGACACTATTCAAGCTATACTGTGCTTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAAT-------------------------------TTGTCATGGATAGTACAAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   18835388 531 - 121039945 AAGAGTCCTGTCCAGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTATATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCCCTAACCCTACCCAATTTGTCTTTACGCGCCTGACCATC----AAGGCTCTTCTGGGTCATATTTAGTTTGTGCTGATGTTTCCCCTTCCTCCCCTCTTTAGTCCTCACTATTTTTGCTTTGGTCATG-----TTATGCTGTATTCTGTAAG---GCTTAAAAAAACTTTTTT---ATGGTGGCAGGGGAGAATGTTTTATAAGTATGCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTTGGTAAATGTTTGTTTTATTGAATGTATGACCCTATTCTAGCTATATTGTGCTTGAACAAAAATCTTAACTGCTTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGACATAACTTCAAGAACTTGTCATGGATAGTACAAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTCCCTATGAAAGAGAGTGTAAGAAGTGA
i nomLeu3.chr6                  n 17438 C 0
s macFas5.chr7                   65240125 532 + 171882078 AACAGTCCTGTACAGGCGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTATTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCACTAACCCTACCCAATTTGTCTTTACATGTCTGACCACC----AAGGCTCTTCTGGGTCATATTTTGTTCATGCTGATATATCACCTTCCTACCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATG-----TTATGCTGTATTCTGTAAGCCTTTTT-----ACTTTTTTTAAAATGGTGGCAGGGGAGAATATTTTATAATTATACTTTGTGCTTTTCATCTTCCACTGAATAAATGCTTGGTAAATATTTGTTTTATTAAGTGTGTGATTCTATTGTCACTACATTGTGCTTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATCAAGAACTCGTCATGGATAGTACAAAAAGGTCTCTAAGGGCTTGATAGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTGA
i macFas5.chr7                  n 30845 I 2313
s papAnu2.chr7                   59621430 532 + 162156779 AACAGTCCTGTACAGGCGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTATTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCACTAACCCTACCCAATTTGTCTTTACATGTCTGACCACC----AAGGCTCTTCTGGGTCATATTTTGTTCATGCTGATATGTCACCTTCCTCCCCTCTTTAGTCCttactatttttgctttggtcatG-----TTATGCTGTATTCTGTaagccttttt-----actttttttaaaatggtggcaggggagaatattttataattatactttGTGCTTTTCATCTTCCACTGAATaaatgcttggtaaatatttgttttattaagtGTGTGATCCTATTGTCACTATATTGTGCTTGAACAAAAATCTTAACTGCCTTATAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATCAAGAACTCGTCATGGATAGTACAAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTGA
i papAnu2.chr7                  n 16541 T 532
s chlSab2.chr29                   3815439 532 +  24206276 AAGAGTCCTGTACAGGTGATCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACAGCCGCCCCCTAACCCTACCCAATTTGTCTTTACATGTCTGACCACC----AAGGCTCTTCTGGGTCATATTTTGTTCATGCTGATATGTCACCTTCCTCCCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATG-----TTATGCTGTATTCTGTAAGCCTTTTT-----ACTTTTTTTTAAATGGTGGCAGGGGAGAATATTTTATAATTATACTTTGTGCTTTTCATCTTCCACTGAATAAATGCTTGGTAAATATTTGTTTTATTAAGTGTGTGATCCTATTGTCACTATATTGTGCTTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATCAAGAACTCGTCATGGATAGTACAAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTGA
i chlSab2.chr29                 n 0 I 2675
e calJac3.chr10                 113951365 89514 - 132174527 T

a score=116102.000000
s hg38.chr15_KI270850v1_alt         71495 434 +    430880 AAAAAAGCAAAACAGAGTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCTA--TTTTTTTCCTGTTTTATAAATTTGCCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAAC--CAAGGAATCCTTTTTATACTTCTTTTCTGTGAAGCCATGTTATGAAAGATTGTTATACAAACTTAAGTATAGTTTTTCCATCTTCAGTAACAGACCTGATTGCCATCTAGTTACTGGTTCTGATCACACAAGaatgcaaagcagcttgttctaataacttgtgcaggcctattgggaactagtatatggctttgagtccttttgaagtatttaacataatttggcaattccattactccttttatggacttcttggcatctatgaactcttggtagggaatcactgTTTTAGAATGAAAAATGtctcccagg
s panTro4.chr15_GL392289_random     85385 437 -    187897 AAAAAAGCAAAACAGAGTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCTA-TTTTTTTTCCTGTTTTATAAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCCTTTTTATACTTCTTTTCTATGAAGCCATGTTATGAAAGATTGTTATACCAACTTAAGTATAGTTTTTCCATCTTCAGTAACAGACGTGATTGCCATCTAGTTACTGGTTCTGATCACCccaaaatgcaaagcagcttgttctaataacttatgcaggcctattgggagctagtatatggctttgagtccttttgaagtatttaacataatttggcaattccattactccttttatggacttcttggcatctgtgaactcttggtagggaatcactgTTTTAGAATGAAAAATATCTCCCAGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17600045 438 -  99152023 AAGAAAGCAAAACAGAGTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCTATTTTTTTTTCCTGTTTTATAAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCCTTTTTATATTTCTTTTCTGTGAAGCCATGTTATGAAAGATTGTTATACAAACTTAAGTATAGTTTTTCCATCTTCAGTAACAGACCTGATTGCCGTCTAGTTACTGGTTCTGATCACAccaaaatgcaaagcagcttgttctaataacttgtgcaggcctattgggaactagtatatggctttgagtccttttgaagtatttaacataatttggcaattccattactccttttatggacttcttggcatctgtgaactcttggtagggaatcactgTTTCAGAATGAAAAATGTCTCCCAGg
i ponAbe2.chr15                 C 0 I 6646
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e papAnu2.chr7                   59621962 532 + 162156779 T
e macFas5.chr7                   65240657 2313 + 171882078 I
e nomLeu3.chr6                   18835919   0 - 121039945 C

a score=668336.000000
s hg38.chr15_KI270850v1_alt         71929 7448 +    430880 [encoded data, 7462 characters]
s panTro4.chr15_GL392289_random     85822 7428 -    187897 [encoded data, 7462 characters]
i panTro4.chr15_GL392289_random C 0 I 72898
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e papAnu2.chr7                   59621962  532 + 162156779 T
e macFas5.chr7                   65240657 2313 + 171882078 I
e nomLeu3.chr6                   18835919    0 - 121039945 C
e ponAbe2.chr15                  17600483 6646 -  99152023 I

a score=16296.000000
s hg38.chr15_KI270850v1_alt         79377 173 +    430880 gttgctagctttatcctttttctcccctgcattacttgaggtatttcccatcttgaaaagggattggggtgaggctcaatttcccctactagaaatttcttcccagttacgagaggtttgtataaggctcaacctctcctactggagatttctcacctttcctttccttccct
s panTro4.chr15_GL392289_random    166148 173 -    187897 gttgctagctttatcctttttctcccctgcattacttgaggtatttcccatcttgaaaagggattggggtgaggctcaatttcccctactagaaatttcttcccagttacgagaggtttgtataaggctcaacctctcctactggagatttctcacctttcctttcctttcct
i panTro4.chr15_GL392289_random I 72898 I 1
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e papAnu2.chr7                   59621962 532 + 162156779 T
e macFas5.chr7                   65240657 2313 + 171882078 I
e nomLeu3.chr6                   18835919   0 - 121039945 C
e ponAbe2.chr15                  17600483 6646 -  99152023 I

a score=0.000000
s hg38.chr15_KI270850v1_alt         79550 148 +    430880 tcccttcccttcccttcccttcccttccctttcccttctctttcccttccctttcccttccctttccctttcctttcctttccctttcctttcctttccctttcctttcctttccctttcctttcctttccctttccctttccctttc
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e papAnu2.chr7                   59621962 532 + 162156779 T
e macFas5.chr7                   65240657 2313 + 171882078 I
e nomLeu3.chr6                   18835919   0 - 121039945 C
e ponAbe2.chr15                  17600483 6646 -  99152023 I
e panTro4.chr15_GL392289_random    166321   1 -    187897 I

a score=220.000000
s hg38.chr15_KI270850v1_alt         79698 5 +    430880 ctttc
s papAnu2.chr7                  102466298 5 - 162156779 ccttt
i papAnu2.chr7                  I 16541 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e macFas5.chr7                   65240657 2313 + 171882078 I
e nomLeu3.chr6                   18835919 0 - 121039945 C
e ponAbe2.chr15                  17600483 6646 -  99152023 I
e panTro4.chr15_GL392289_random    166321 1 -    187897 I

a score=3438.000000
s hg38.chr15_KI270850v1_alt         79703 12 +    430880 cctttcctttcc
s ponAbe2.chr15                  17607129 12 -  99152023 cctttcctttcc
i ponAbe2.chr15                 I 6646 I 2
s papAnu2.chr7                  102466303 12 - 162156779 cctttcctttcc
i papAnu2.chr7                  C 0 I 2
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e macFas5.chr7                   65240657 2313 + 171882078 I
e nomLeu3.chr6                   18835919  0 - 121039945 C
e panTro4.chr15_GL392289_random    166321  1 -    187897 I

a score=266130.000000
s hg38.chr15_KI270850v1_alt         79715 541 +    430880 gaggctcaacccccctgctggaggtttcttgcacttttctcctttcgcttcatccttctctggctgcttccctcatgggaacgttggtttcctcttagcaatggctgtttcagtagaaacccctgacccagactcctttacagaagggctaccttaagctgtataaggtgaccacagaactgcagatctggactgaacacttgctttgcactcaattgtgagtctcaacacacactttcaatctccaagatatcccaaccaccaagaaaatagtttgtcgctcttgtgatgtttcttacgttggtctgtgcacatagttacctggtcaccatggtatgtgaggatccttttctcttaagttgttggtctgttcctttccagactgctgagagtccgggtttattcatcacactgggtgggtcctgatccctcaccatgaggccacctcagtgaggcagtgggatgcttctcctcactattggtgactggagacccttttctcagaggagaatgGGAATTCCAGACGAGCCCCCAGATTGTT
s panTro4.chr15_GL392289_random    166322 540 -    187897 gaggctcaacccccctgctggaggtttcttgcacttttctccttttgcttcgtccttctctggctgcttccctcacgggaacgttggtttcctcttagcaatggctgtttcagtagaaacccc-gacccagactcctttacagaagggctgccttaagctttataaggtgaccacagaactgcagatctggactgaacacttgctttgcactcaattgtgtgtctcaacacacactttcaatctccaagatatcccaaccaccaagaaaatacttcgtcgctcttgtgatgtttgttacgttggtctgtgcacatagttacctggtcaccatggtatgtgaggatccttttctcttaacttgttggtctgttcctttccagactgctgagagtccgggtttattcatcacactgggtgggtcctgatccctcaccatgaggccacctcaatgaggcagtgggatgcttctcctcactattggtgactggagacccttttctcagaggagaatgggaattccggacgagcccccagattgtt
i panTro4.chr15_GL392289_random I 1 C 0
s ponAbe2.chr15                  17607143 541 -  99152023 gaggctcagcccccctgctggaggtttcttgcacttttctcctttcacttcgtccttctctggctgcttccttcacgggaacgttggtttcctgttagcaatggctgtttcagtagaaacccctgacccagactcctttacagaagggtcgccttaaccagtataaggtgaccacagaaccgcagatctggactgaacacttggtttgcgctcaattgtgagtctcaacacacactttcaatctccaggatatcccaaccaccaaggaaatgctttgttgctgttgtgatgtttcttactttggtctgtgcagatagttacctggtcaccatggtatgtgaggatatttttctcttaagttgttggtctgttcctttccacattgctgagagtccgggtttattcgtcacactgggtgggtcctgatccctcaccatgaggccacttcaacgaggcagtgggatgcctctcctcactattggtgaccggagacccttttcccagaggagagtgGGAATTCCAGACGAGCCCCCAGATtgtt
i ponAbe2.chr15                 I 2 C 0
s papAnu2.chr7                  102466317 540 - 162156779 gaGGCTCAACCCCCCTGCTGGAGGTTTCTTGCACTTTTCTCCTTTCACTTTGTCCTTCCCTGGCTGCTTCCCTTGTGGGAACATTGGGTTCCTCTTAGCAATGGCGGGTTCAGTAGAAACCCCTGACCTGGACTGCTTTACTGAAGGGCCACCTTAAGCAGTATAAGGTGTCCACAGAATCGCAGATCTGGACTGAACACTTGCTTCTCACTCAGTTGTGAATTTCAACACACACTTTCAATCTCCAAGATATCCCAACCACCAAGGAAATATTTTGTTACTCTTGTGAAGTTTCTTACTTTGGTCTGTGCACATGGTTACCTGGTCTCAGTGGTATGTGAGGATTCTTTTCTC-TAAGTTGTTGGTCTATTCCTTTCCACATTGCTGAGAGTCTGGGTTTATTCGTCACACTGGGTGAGTCCTGATCACTCACCATGAGGCCACCTCAGTGAGGCAGTGGGACGCCTCTCCTCACTAGAGTTGACCAGAGACCCTTTCCCTAGAGGAGAATGGGAATCCCGGACAAGCCCCCAGATTGTT
i papAnu2.chr7                  I 2 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e macFas5.chr7                   65240657 2313 + 171882078 I
e nomLeu3.chr6                   18835919   0 - 121039945 C

a score=81879.000000
s hg38.chr15_KI270850v1_alt         80256 332 +    430880 AGAAACAAATGATCAggctgggcacagtggctcgcccctgtaatcccagcactttgggaggccgaggtgggcggatcatgaagtcaggagatcgagaccatcctggctaacatggtgaaatgccgtctctactaaaaaaaaaaaaaaaacacaaaaaaattagctgggcgcaatggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagctgagatcaagccactgtgctccaccctgggcaacagagcgaaactctgtctcaaaaaaaaaaaaaa------gaaagaaaaa
s panTro4.chr15_GL392289_random    166862 332 -    187897 AGAAACAAATGATCAggctgggcgaagtggctcgcccctgtaatcccagcactttgggaggccgaggcgggcggatcatgaagtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaaaaaacaaaaaa-acaaaaaaattagctgggcgcagtggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagctgagatcaagccactgtgctccaccctgggtgacagagcgaaactctgtctcaaaaaaaaaaaaaa-----agaaagaaaaa
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17607684 333 -  99152023 agaaacaaatgatcaggctgggcgcggtggctcgcccttgtaatcccagcactttgggaggccgaggtaggcggatcatgaggtcaggagattgagaccatcctggctaacattgtgaaaccccgtctctactaaaaaaaaaaat-----acaaaaaaattagctggatgcagtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaacctgggaggcggagcttgcaatgagcctagatcaagccactgagctccagcctgggcgacagagcaaaactctgtctcaaaaaaaaaaaaaaaaaagaaaagaaaaaa
i ponAbe2.chr15                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e papAnu2.chr7                  102466857   0 - 162156779 C
e macFas5.chr7                   65240657 2313 + 171882078 I
e nomLeu3.chr6                   18835919   0 - 121039945 C

a score=670851.000000
s hg38.chr15_KI270850v1_alt         80588 837 +    430880 agaaaCaaatgatcagtgctgcaaggaagaaccagcactcaggaaaaaa-agttttctcagcaagacaacttacttctgcaaaagactgctgtttgcattagtcacgaatgcaagagcacaccgagcagg------atagagcaggag-tttatatccctaacgcagtccctacctctctgtcatttccacatgggctggagtcggactacacaatctaagcagacttgatttgctatcgcgaatattctccctaataaggaagggagagggaatgtgagttacaggttgggactgacgggaagagttgtttacaaggcaggtaactgagcagataactaagcaggtaaataggggtgagaaggtacagggaaattgttcttaggaacaaagaacgaggaagttgaacaggttaaacctttgaagaggaacttactgtacctaataAG---TTTTTTT-GATTGGCTAATTAAATGTCTATTCATTATTGCCAAAAAGTGCCTACCTCAACAACAAGATACCAAATTTTAGAAAATGTTGGAGCTCTCTCTGAATCTAGGAGGAAGTGAGTAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCACTTTTTTTACTGTGTTTCTGTATAACATAGATAATATTTTTTGCCCTGCAAGAGAGCATATAGAGGAAAGCTCTTTGGCAGCGATACTGTGCCCTATGAATAAAAAAGTGATGGTGTCATTTGTGGCTGAATAACAGTTTATTTTGAGAATGCTTTATAACAGCTTTTCATGGGAAATAAAGCAATGCTGTTAACTTCATCTTGCA-TTTTTCTCATTTTTACTATGATTAAAAAGTA
s panTro4.chr15_GL392289_random    167194 837 -    187897 agaaaCaaatgatcagtgctgcaaggaagaaccagcactcaggaaaaaa-agttttctcagcaagacaacttacttctgcaaaagagtgctgtttgcattagtcacgaatgcaagagcacaccgagcggg------atagagcaggag-tttatatccctaatgcagtccctacctctctgtcattcccacatgggctggagtcggactacacaatctaagcagacctgatttgctatggcgaatattctccctaataaggaagggagagggaatgtgagttacaggttgggactgacgggaagagttgtttacaaggcaggtaactgagcagataactaagcaggtaaataggggtgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaggttaaacctttgaagaggaacttactgtacctaataAG---TTTTTTTTGATTGGCTAATTAAATGTCTATTCATTATTGCCAAAAAGTGCCTACCCCAACAACAAGATACCAAATTTTAGAAAATGTTGGAGCTCTCTCTGAATCTAGGAGGAAGTGAGTAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCACTTTTTT-ATTGTGTTTCTGTATAACATAGATAATATTTTTTGCCCTGCAAGAGAGCATATAGAGGAAAGCTCTTTGGCAGCGATACTGTGCCCTATGAATAAAAAAGTGATGGTGTCATTTGTGGCTGAATAACAGTTTATTTTGAGAATGCTTTATGACAGCTTTTCATGGGAAATAAAGCAATGCTGTTAACTTCATCTTGCA-TTTTTCTCATTTTTACTATGATTAAAAAGTA
i panTro4.chr15_GL392289_random C 0 T 74781
s ponAbe2.chr15                  17608017 795 -  99152023 agaaacaaatgatcagtgctgcaaggaagaaccagcactcagggaaaaa-agttttctcagcaagaca----acttctgcaaaagagtgctgtttgcattagtcacgaatgcaagagcacaccaagtggc------gtagagcagggg-tttatatccctaacgcagtccctacctctgtgtcattcccacatgggctggagtcagactacacaatctaagcagacctgatttgctatcgtgaatattttccctaataaggaagggagagggaatgtgagttacaggttgggactgacgggaagagtcgtttacaaggcaggtaactgagcagataactaagcaggtaaataggggtgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaa---gttaaacctttgaagaggaacttactgtacctaataAG---TTTTTTT-GATTGGCTAATTAAATGTCTATTCATTATTGCCAAAAAGTGCCTACCCCAACAGGAAGATACCAAATTTTAGAAAATGTTGGAGCTCTCTCTGAATCTAAGAGGAAGTGAGTAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCACTTTTTTTACTGTGTTTCTGTATAAAATAGACAATATTTTTTGCCCTGCAAGAGAGCATGTAGAGGAAAGCTCTTTGGCAATGATACTGTGCCCTATGAATAAAAAAGTGATGGTGTCATTTGTGGCTGAATAACAGTTTATTTCG-----------------------------------GCAATGCGGTTAACTTCATCTTGCA-TTTTTCTCATTTTTACCATGATTAAAAAGTA
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106504935 838 - 171882078 agaaacaaatgatcagtgccacaaggaagaaccagcactcaggcaaaaacggttttctcagcaagaca----acttctgcaaaagagtgctgcttgggttggtcacaattgcaagagcacaccgagtgggttctctctagagcaggggttttttatccctaacgcagtccctacttctgtgtcattcccccatgggctggggtcggacctcacgatctaatcggacctgatttgctatcgcgagtattttccctaataaggaagggagagggaatgtgagttacaggttgatactgatgggaagagttgtttaccaggcaggtaactgagcagataactaatcaggtaagtagggccgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacttttgaa---gaacttactgtacctaataAGGTTTTTTTTT-GGTTGACTAATTAAATGTCTATTCATTTTTGCCAAAAAGTGCCTACCCCAATGACAAGATACTAAAATTTAGAAAATGTTGGAGCCCTCTCTGAATCTAGGAGGAAGTGAATAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCACTTTTTTTACTGTGTTTCTGTATAAAATAG---ATATTTTTTGCCCTGCAAGAGAACATATAGAGGAAAGCTCTTTGGCAACGATACTGTGCCCTATGAATAAAAAAGTGATGATGTCATTTGTGGCTGAATAACACTTTATTTTGAGAATGCTTTATAACAGCTTTTCATGGGAAATAAATCTATGCTGTTAACTTCATCTTGCA-TTTTTGTCATTTTTACTGTGATTAAAAAGTA
i macFas5.chr7                  I 30845 C 0
s papAnu2.chr7                  102466857 839 - 162156779 AGAAACAAATGATCAGTGCCACAAGAAAGAACCAGCACTCAGGCAAAAACTATTTTCTCAGCGAGACA----ACTTCTGCAAAAGAGTGCTGCTTGGGTTAGTCACAATTGCAAGAGCACACCGAGTGGGTTCTCTCTAGAGCAGGGGTTTTTTATCCCTAACGCAGTCCCTACTTCTGTGTCATTCCCCCATGGGCTGGGGTCGGACCTCACGATCTAATCGGACCTGATTTGCTATCGCGAGTATTTTCCCTAataaggaagggagagggaatgTGAGTTACAGGTTGAGACTGACAGGAAGAGTTGTTTACAAGGCAGGTAACTGAGCAGATAACTAATCAGGTAAGTAGGGCCGAGAAGGTACAGGGAAATTGTTCTtaggaacaaagaacaaggaagtTGAACAAGTTAAACTTTTGAA---GAACTTACTGTACctaataaggttttttttt-ggttgactAATTAAATGTCTATTCATTTTTGCCAAAAAGTGCCTACCCCAATGACAAGAtactaaattttagaaaatgttggaGCTCTCTCTGAATCTAGGAGGAAGTGAATAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCACtttttttACTGTGTTTCtgtataaaatag---atattttttgcCCTGCAAGAGAACATATAGAGGAAAGCTCTTTGGCAACGATACTGTGCCCTATGAATAAAAAAGTGATGATGTCATTTGTGGCTGAATAACACTTTATTTTGAGAATGCTTTATAACAGCTTTTCATGGGAAATAAATCTATGCTGTTAACTTCATCTtgcattttttgtcatttttactgTGATTAAAAAGTA
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e nomLeu3.chr6                   18835919   0 - 121039945 C

a score=660512.000000
s hg38.chr15_KI270850v1_alt         81425 816 +    430880 -----GTC-AGCTTGTACAAAGGAAAGAAACAAGCCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGAACAGATTACCTTTCCAAATTGAATTTGTGGAGGAGCATTGGGAAATATCAGAAATGTCATATTAAGCACCTCAGTGGTACTTT-TAATAGaggagttattcagaaattatactaggcagatagagagggtaaggaggcctcagtaaggctttcccttttaatagaaacaactccagaaacatttctttttcttttctttttatc-ttttttttggagacggaatctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaatgccagcgcttagaaactgtgtccattcaacatggagattcccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccatgtgtgcaggacaacatggtgacctacatttgcatattaaaaggctagggtgggagggccacgtttttctcgggctacatgaatgacctgcctggtcaaaccaatgccctgggccctgtgcaaatcagacaccacctcctccagcctcccaatataaccgagtactgttctgccacacacggggctttttctctgttcaga-cccccctttttctgtaccgcagggagcctttcttctttcttgcctattaaactttctgttccttaaaaccactcctgtgtgtccatg
s panTro4.chr15_GL392289_random     93250 817 -    187897 -----gtc-aACTTGTACAAAGGAAAGAAACAAACCTTGATTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACAGATTACCTTTCCAAATTGAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATATTAAGCACCTCAGTGGTACTTT-TAATAGaggagttattcagaaattatactaggcagatagagagggtaaggaggcctcagtaaggctttcgcttttaatagaaacaactccagaaacatttctttttcttttctttttatc-ttttttttggagacggagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaataccagcgcttagaaactgtgtccattcaacatggtgattgccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccacgtgtgcaggacaacatggtgacctacatttgcatattaaaaggctagggtgagagggccacgtttttctcgggctgcatgaatgacatgcctggtcaaaccaatgccctggtccctgtgcaaatcagacaccacctcctccagcctaccaatataaccaagtactgttctgccacacacggggctttttctctgttcggagcccccctttttctgtacagcggggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctgtgtgtccatg
i panTro4.chr15_GL392289_random T 74781 C 0
s ponAbe2.chr15                  17608812 814 -  99152023 -----GTC-AACTTGTACAAAGGAAAGAAACAAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACAGATTACCTTTCCAAATTGAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATAGTAAGCACCTAAGTGGTACTTT-TAGTAGaggagttattccgaaattatattaggcagatagagagggtaaggagtcctcagtaaggctttcgcttttaatagaaacaactccagaaacatttctttttcttttctttttatctttttttttggagacagagtctcgctctgtcacccaggctagagtgcagtggtgcgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaatgccagcgcttagaaactgtgtccattcaacatggagattcccaccc---tcttctagtcaccacctcaaggtgacacctccagatgaccccacgtgtgcaggacaacatggtgacctacatttgcatattaaaaggcaagggtgggagggccacgtttttctcggtctacatgaatgacatgcctggtcaaaccaatgccctgggccctgtgcaaatcagacaccacctcctccagcctcccaatataaccgagtactattctgccacacatggggctttttctctgttcgga-gcgccctttttctgtacagcggggagcctttcttctttcttgcctattaaactttctgctccttaaaaccagtcctgtgtgtccatg
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106505773 812 - 171882078 GTCCAGTCAAACCTGTAGAAAGG-AATGAACAAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACGGATTACCTTTCCAAATTTAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATATGAAGCACCTAAGTGGTACTTT-TAGTAGaggagttactcagaaattatattaggcagatagagagggaaaggagtcctcagtaaggctttcccttttaatagaaacaactcctgaaacatttc-ttttcttttct--------ttttttttggagacggagtctcactctgtagaccaggctttagtgcagtgatgtgatctcggctcactgcaacctcctcctcccagttatagttgcatctcctgcctcagcctcctgagtagctgggactgcaggcTGCcgagctttaatatgcaaatgtcagcacttggaaactgagtccattcaacatgaaaattcccgccctcttcttctagtcaccgcctcaaggtgacacctccagaagaccc--tgtgtgcaggacaatatggtgacctacatttgcaaattaaaaggctagagtgggagggccacgtttttcttgggctacatgaatgacatgcctggtcaaaccgattccctgggcccaatgcaaatcagacaccacctcctccagcctcccaatataaccaagtacttttctgctgcacatggggctttttctctgttcggagccctgctttctctgtacaggggggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctctgcatccatg
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102467696 812 - 162156779 GTCCAGTCAAATCTGtagaaaggaaatgaacaaaccTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACGGATTACCTTTCCAAATTTAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATATGAAGCACCTAAGTGGTACTTTATTATAGAGGAGTTATTCAGAAATTAtattaggcagatagagagggaAAGGAGTCCTCAGTAAGGCTTTCCCTTTTAATAGAAACAACTCCcgaaacatttc-ttttcttttc---------ttttttttggagacggagtctcactctgtcgaccaggctttagtgcagtgatgtgatctcggctcactgcaacctcctcctcccaggtacAGTtgcatctcctgcctcagcctcctgagtagctgggactgcaggctgccgagctttaatatgcaaatgtcaGCACTTGGAAACTGAGTCCATTCAACATGAAAATTCCTGCCCTCTTCTTCTAGTCACCGCCTCAAGGTGACACCTCCAGAAGACCC--TGTGTGCAGGACAATATGGTGACCTACATTTGCAAATTAAAAGGCTAGAGTGGGAGGGCCACGTTTTTCTTGGGCTTCATGAATGACCTGCCTGGTCAAACCGATTCCCTGGGCCCAatgcaaatcagacaccacctcctccagcctcccaataTAACCAAGTACTTTTCTGCTGCACACGGGG-TTTTTCTCTGTTCGGAGCCCCGCTTTCTCTGTACAGGGGGgagcctttcttctttcctgcctattaaactttctgctccttaaaaccactcctcTGCATCCATG
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3815971 2675 +  24206276 I
e nomLeu3.chr6                   18835919   0 - 121039945 C

a score=394985.000000
s hg38.chr15_KI270850v1_alt         82241 352 +    430880 tcgtttaactggcgtgagacaaaggaccccgatgtttctcccgttttcagagccatatcaCTTTGAGTCCAGAGGAATTATT---TTCATTTATCTGACCAATTTATAATATAGGGTCAAATTCCTAGTGGT----TATCCTCCCTCATCCCCATTTTTATACCCTTCCTTGAAAGGAACAGGTATATGAAGAGGAGACAGGTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTTTT-----TGGTGGGGGTGGGGGG---AGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAGTTTAGGGTTAGGGAATTGAGTTGAATGGAGATAGTCACTGCC
s panTro4.chr15_GL392289_random     94067 331 -    187897 tcttttaactgacgtgacacaaaggaccccgatgtttctccagtcatcagagccatatcaCTTTGAGTCCAGAGGAATTATTGTTTTCATTTATCTGA---ATTTATAATATAGAGTCAAATTCCTAGTGGT----TATCCTCTCTCATCCCCATTTTTATAGCCTTCCTTGAAAGGAACAGGTATATGAAGAGGAGACAGGTTTCCCTT--------------------AGTATCTTGATTTTTTTT------GGTGGGAGTCGGGGG---AGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATGCATGTCAGCTAGTTTAGGGTTAGGGAATTGAGTTGAATGGAGATAGTCACTGCC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17609626 360 -  99152023 tcgtttaactggcatgagacaaaggaccccgatgtttctccagtcatcagagccatatcaCTTTTAGTCCAGAGGAATTATTGTTTTCATTTATCTGACCAATTTATAATATAGAGTCAAATTCCTAGTGGT----TATCCTCCCTCATCCCCATTTTTATGCCCTTCCTTGAAAGGAACAGATATATGAAGAGGAGACAGGTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTTTTGTGGGGGGGTGGGGTGGGGGG---AGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAGTTTAGGGTTAGGGAATTGAGTTGAATGGAGATAGTCACTGCC
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106506585 356 - 171882078 ttgtttaactgatgtgagcccaaggaccctgatgtttctccagtcatcagagccatatcaATTTCAGTCCAGAGGAA---TCGTTTTCATTTATCTGACCGATTTATAATATAGGGTCAAATTCATAGTGGTTGTCTATCCTCCCTCATCCCCATTTTTGTACCCTTCCTTGAAAGGAACATATATATGAAGAAGATACATGTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTTTC--------TTAGTGTGGGGGGCACAGTTAAACTTACTTAGACTTGATAAAGGGCAGTATTTGATAAATGTCAGCTAGTTGAGGGGTAGGGAATTGAGTTGACTGGAGATAGTCACTGCC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102468508 355 - 162156779 TTGTTTAACTGGTGTGAGCCGAAGGACCCC-ATGTTTCTCCAGTCATCAGAGCCATATCAATTTCAGTCCCGAGGAA---TCGTTTTCATTTATCTGACCGATTTATAATATAGGGTCAAATTCATAGTGGTTGTCTATCCTCCCTCATCCCCATTTTTGTACCCTTCCTTGAAAGGAACATATATATGAAGAAGATACATGTTTCCCTTTTGTGAATAGTATATCCCTTagtatcttgatttttttc--------ttagtgtgGGGGGCACCGTTAAACTTACTTAGACTTGATAAAGGGCAGTATTTGATAAATGTCAGCTAGTTGAGGGGTAGGGAATTGAGTTGACTGGGGATAGTCACTGCC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20332572 358 -  24206276 tcgtttaactggtgtgagccgaaggaccccgatgtttctccagtcatcagagccatatcaATTTCAGTCCCGAGGAATCGTCGTTTTCATTTATCTGACCGATTTATAATATAGGGTCAAATTCATAGTGGTTGTCTATCCTCCCTCATCCCCATTTTTGTACCCTTCCTTGAAAGAAACATATATATGAAGAAGATACATGTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTTTC--------TTAGTGTGGGGGGCACAGATAAACTTACTTAGACTTGATAAAGGGCAGTATTTGAT-AATGTCAGCTAGTTGAGGGGTAGGGAATTGAGTTGACCGGAGATAGTCACTGCC
i chlSab2.chr29                 I 18239 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e nomLeu3.chr6                   18835919   0 - 121039945 C

a score=789701.000000
s hg38.chr15_KI270850v1_alt         82593 511 +    430880 AAATGTAAAGCATGACTGGAGAGCCACAGTGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAGTGTTATGTGATCTCTTCTAGAAGATTGTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCTTACAGTGATGTTCTCAGTAGCTGTAATTGCTGTCT----TTGAATACTTAAGC---ATTTTTTTTTTAGCTCACAGGGGTATGTGTGCATTTTTCTTTTACCAAGTGTTAGAACTTTGACTCTGCTTTTGTGGGCTCTGGTTTAGCAACTTGGTTGTTTAGTTGTAAAATGATTAGTAGGGAAAACC------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTAAGTTTCTTTTGTTCTCAGAGCACTTAGA-----ATTTTATATGGAAATTCTATCAGTTTACTTGATTCTCCACCCCACATT
s panTro4.chr15_GL392289_random     94398 511 -    187897 AAATGTAAAGCATGACTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAGTGTTATGTGATCTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTCGGAACATAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGTTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCTTACAATGATGTTCTCAGTAGCTGTAATTGCTGTCTGTCTTTGAATACTTAAGC---ATTTTATTTT-AGCTCACAGGGGTATGTATGCATTTTTCTTTTACCAAGTGTTAGAACTTTGACTCTGCTTTTGTGGGCTCTGGGTTAGCAACTTGGTTGTTTAGTTGTAAAATGATTAG---GGAAAACC------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTAAGTTTCTTTTGTTGTCAGAGCACTTCGA-----ATTTTATGTGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACAGT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17609986 518 -  99152023 AAATGTAAAGCATGACTGGAGAGTCACAGTGATGAAGCCGGGGTCCGTTTCTCCAGATCCTTTGTAACAGTGTTATGTGATGTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAGTGGATTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCTTACAATGATGTTCTCAGTAGCTGTAATTGCTGTCTGTCTTTGAATACTTAAGC---ATTTTTTT---AGCTCACAGGGGTGTGTATCCATTTTTCTTTTACCAAGTGGTAGAACTTTGACTCTGCTTTTGTGGGCTCTGGGTTAGCAACTTGGTTGTTTAGTTGTAAAATGATTAGCAGGGAAAACCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTAAGTTTCTTTTGTTGTCAGAGCACTTAGA-----ATTTTATATGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACATT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   18835919 441 - 121039945 AAATGTAAAGCATGACTGGAGACCCAGAGTG-----------------------------------------------------TTCTAGAAGATCGTTCTGAAAGATAATGCCTACTCGGGACCTAGGAAACCATCTAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCTTACAGTGATGTTCTCAGTAGCTGTAATTGCTGTCTGTCTTTGAATACTTAAGC---ATATTTTT---AGATGACAGGGATATATGTGCATTTTTATTTTACCAAGTGTTAGAATTTTTACTCTGCTTTTGTGGTCTCTGGGTTAGCTACTTGGTT-----GTTGTAAAATGATTAGCAGGGAAAACt------------------------gtgcgtgtgtgtgtgtatgtgtgtATTTTAAGTTTCTTTTGTTGTCGGAGGACTTCGAATTTTATTTTATATGGTAATTCTGCCAATTTGCTTTATTCTCCATCCCACATT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106506941 504 - 171882078 AAATGTAAAGCATGCCTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTCCAGAGCCTTTGTAACAGTGTTATGTGATCTCTTCTAGAAGATCATCCCGAAAGATAATGCCAGCTCGGAACCTAGGAAACCATCCAGCGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCTTCAGCATGTTGGTTTTCTCTGCCTCAGTTTGCTTACAATGATGTTCTCAGTAGCTGTAATTGCTGTCTGTCTTTGAATACTTAAGCTTTTTTTTTTTT--AGCTCACACAGGTATGTATGCATTTTAATTTTACCAAGTGTTAGAACTTTGACCCTCCTTTTGTGGGCTCTGGGTCAGCAACTTGGTTGTTTAGTTGTAAAATGGTTAGCAGGGAAAAAC------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTAAGTTGATTTTGTTGTCAGAGCACTTAGA-----ATTTTATATGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACGTT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102468863 491 - 162156779 AAATGTAAAGCATGCCTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAGTGTTATGTGATCTCTTCTAGAAGATCATCCCAAAAGATAATGCCAGCTTGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCTTCAGCATATTGgttttctctgcctcagtttgcTTACAATGATGTTCTCAGTAACTGTAATTGCTGTCTGTCTTTGAATACTTAAGC---Atttttttt--AGCTCACACAGGtatgtatgcatttttattttaccaagtgTTAGAACTTTGACCCTCCTTTTGTGGGCTCTGGGTCAGCAACTTGGTTGTTTAGTTGTAAAATGGTTAGTAGGgaaaaac----------------------------gtgtgtgtgtgtgtgtctgtattttaagttgattttgttGTCAGAGCACTTAGA-----ATTTTATATGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACGTT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20332930 495 -  24206276 AAATGTAAAGCATGACTGGAGAGCCAGAGTGATAAAGCCAGGGTCCCTTTCTTCAGATCCTTTGTAACAGTGTTATGTGATCTCTTCTAGAAGATCATCCCGAAAGATAATGCCAGCTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGGTTAGGTGGTTCAACTCCTCTTCAGCATGTTGGTTTTCTCTGCCTCAGTTTGCTTCCAATGATGTTCTCAGTAGCAGTAATTGCTGTCTGTCTTTGAATACTTAAGC---ATTTCTTTT--AGCTCACACAGGTATGTATGCATTTTTATTTTACCAAGTGTTAGAACTTTGACCCTTCTTTTGTGGGCTCTGGGTCAGCAACTTGGTTGTTTAGTTGTAAAATGGTTAGCAGGGCAAAAC------------------------gtgtgtgtgtgtgtgtgtgtctgtATTTTAAGTTGATTTTGTTGTCAGAGCACTTAGA-----ATTTTATATGGAAATTCTGTCAGTTTATTTGCTTCTCCACCCCACATT
i chlSab2.chr29                 C 0 I 13
e calJac3.chr10                 113951365 89514 - 132174527 T

a score=16332.000000
s hg38.chr15_KI270850v1_alt         83104 14 +    430880 TCTTAAACAGCAAA
s panTro4.chr15_GL392289_random     94909 14 -    187897 TATTGAACAGGAAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17610504 14 -  99152023 TATTGAACAGTAAA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   18836360 14 - 121039945 TATTGAACAGCAAA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106507445 14 - 171882078 TATTGAACAGCAAA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102469354 14 - 162156779 TATTGAACAGCAAA
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                  20333425 13 -  24206276 I

a score=91706.000000
s hg38.chr15_KI270850v1_alt         83118 57 +    430880 GTATGAAGGTAATGTGTCCCGTAACCAGCCTTCAGAATAATTACAGCTGCTGTGTCT
s panTro4.chr15_GL392289_random     94923 57 -    187897 GTGTGAAGGTAACGCGTCCCATAACCAGCCTTCAGAAGAATTACAGCTGCTGTATCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17610518 57 -  99152023 GTATGAAGGTAATGCATCGCATAACCAGCCTTCAGAAGAATTACAGCTGCTGTATCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   18836374 57 - 121039945 GTATGAAAGTAATGTGTTCCATAAGCAGCCTTCAGAAGAATTACAACTGCTGTATAT
i nomLeu3.chr6                  C 0 I 300
s macFas5.chr7                  106507459 57 - 171882078 GTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATCATAACTGCTTTATCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102469368 57 - 162156779 GTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATCATAACTGCTTTATCT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20333438 57 -  24206276 GTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATCACAACTGCTTTATCT
i chlSab2.chr29                 I 13 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T

a score=360364.000000
s hg38.chr15_KI270850v1_alt         83175 215 +    430880 CTGAACTTTC---AAGAAGTTTGTGCATCAATTTTCAAAAAATTATGAAATCCTTGAAGATAGCTGTGTTCTACATTTGGAAAGATACAAAAACTGAACCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGCGATAGAGCCACACATTGGTCTCAGTGGATTTATGGAGAAAAATAGGTACGGAAAGTTATTTCTAAATAAGACCAAAAA-TCCTTTT
s panTro4.chr15_GL392289_random     94980 216 -    187897 CTGAACTTTC---AAGAAGTTTGTGCATCAATTTTCAAAAAATTATGAAATCCCTGAAGATAGCTGTGTTCTACATTTGGAAAGATACAAAAACTGAACCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGCCACACACTGGTCTCAGTGGATTTGTGGAGAAAAGTAGGTACAGAAAGTTATTTCTAAATAAGACCAAAAAATCCTTTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17610575 219 -  99152023 CTGAACTTTCAAGAAGAAGTTTGTGCATCAATTTTCAAAAAATTATGAAATCCCTGAAGATAGCTGTGTTCTACATTTGGAAAGATACAAAAACTGAACCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGCCACACATTGGTCTCAGTGGATTTATGGAGAAAAATAAGTACAGAAAGTTATTTCTAAATAAGACCAAAAAATCCTTTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   18836731 216 - 121039945 cTGAACTTTCCAGAAGAAGTTTGTGCATCAGTTTTCAAAAAATTATGTTATC---AAAAATAGCTGTGCCCTACATTTGGAAAGATACAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGGCACACATTGGTCTCAGTGGATTTATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACCCAAAAATCCTTTT
i nomLeu3.chr6                  I 300 C 0
s macFas5.chr7                  106507516 214 - 171882078 CTGAACTTTCAAGA---AGTTTGTGCATCAGTTTTCAAATAA-TACGAAATCCCTGAAGATAGCTGTGTCTTATATTTGGAAAGATACAAAAACTGAACATTCTAGCAGGCAGTTTTGCTTGCTGATGCTCGAGATAGAGCCACACATTGATCTCAGTGGATTTATGGAGAAAAATAGATACAGAAAGTTACTTCTAAATAAGACCCAAAAATCCTTT-
i macFas5.chr7                  C 0 I 1
s papAnu2.chr7                  102469425 217 - 162156779 CTGAACTTTCAAGAAGTAGTTTGTGCATCAGTTTTCAAATAA-TACGAAATCCGTGAAGATAGCTGTGTCCTATATTTGGAAAGATACAAAAACTGAACATTCTAGCAGGCAGTTTTGCTTGCTGATGCTCGAGATAGAGCCACACATTGATCTCAGTGGatttatggagaaaaatagatacagaaagtTACTTCTAAATAAGACCAAAAAATCCTTT-
i papAnu2.chr7                  C 0 n 0
s chlSab2.chr29                  20333495 217 -  24206276 CTGAACTTTCAAGAAGAAGTTTGTGCATCAGTTTTCAAATAA-TACGAAATCCCTGAAGATAGCTGTGTCCTATATTTGGAAAGATACAAAAACTGAACATTCTAGCAGGCAGTTTTGCTTGCTGATGCTCGAGATAGAGCCACACATTGATCTCAGTGGATTTATGGAGGAAAATAGATACAGAAAGTTACTTCTAAATAAGACCAAAAAATCCTTT-
i chlSab2.chr29                 C 0 I 1
e calJac3.chr10                 113951365 89514 - 132174527 T

a score=208382.000000
s hg38.chr15_KI270850v1_alt         83390 158 +    430880 CTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAATATTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTTGAAATTTGTCCACCTATAGTAACCTTTGTGGTAGCTGTCACAGACAGCTTCAT
s panTro4.chr15_GL392289_random     95196 158 -    187897 CTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATAGAGACAGTTTTATGGTGGGGATGGTAGTGACGATAAACTTGTTGGAAATTTGTCCACCTATAGTAACCTTTGTGGTAGCTGTCACAGACAGCTTCAT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17610794 158 -  99152023 CTTAAGTAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTTGAAATTTGTCCGCCTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCAT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   18836947 158 - 121039945 CTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTGGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCAT
i nomLeu3.chr6                  C 0 n 0
s macFas5.chr7                  106507731 158 - 171882078 CTTAAACAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTAAGACAGTTTTATGGTGGGGATGGTAGCGGTGATAAACTTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACTGTCACAGACAACTTCAT
i macFas5.chr7                  I 1 C 0
s chlSab2.chr29                  20333713 158 -  24206276 CTTAAACAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGTGGATGGTAGCGGTGACAAACTTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACTGTCACAGACAACTTCAT
i chlSab2.chr29                 I 1 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=285600.000000
s hg38.chr15_KI270850v1_alt         83548 232 +    430880 CCTCACAGGCCCTAAAATTACTATAAAACTAATAGATTGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGTGTTTTCATAACAAGTG-AAAAAGAGCAGTGTTAGAAGTACTTAAACTTTCCATGTAAGGAGCACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAACAGGCATATTGTGGGTCATATTTTAAAGACAA
s panTro4.chr15_GL392289_random     95354 232 -    187897 CCTCACAGGCCCTAAAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTGGATAATTGTTCTGTGTTTTCATAACAAGTG-AAAAAGAGCAGTGTTAGAAGTACTTAAACATTCCATGTAAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAACAGGCATATTGTAGGTAATATTTTAAAGACAA
i panTro4.chr15_GL392289_random C 0 I 74804
s ponAbe2.chr15                  17610952 228 -  99152023 CCTCACAGGCCCTAAAATTACTATAAAACTAATAGAATGGAAGAGAAACAAAGGACCTGAATAATTGGATGCT----TAATTGTTCTGTGTTTTCATAACCGGTG-AAAAAGAGCAGTGTTAGAAGTACTTAAACATTCCACGTAAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAACAGGCATATTGTGGGTCATATTTTAAAGACAA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102125163 232 + 121039945 CCTCACAGGCCCTAAAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGTGTTTTCATAACCGGTG-AAAAAGTGCAGTGTTAGAAGTACTTAAACATTCCATGTAAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAACAGGCATATTGTGGGTCATATTTTAAAGACAA
i nomLeu3.chr6                  I 17438 C 0
s macFas5.chr7                  106507889 231 - 171882078 CCTCACAGGCCTTAAAATTACTATAAAACTAACAGAATGGAGAAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTC--TGTTTTCATAACTGGTGAAAAAAAAGCAGTATTAGAAGCAATTACACATTCTATGTAAGGAATACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTCACTGTTTAAAAGCTGGCATATTGTAGGTCATATTTTAAAGACAA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  20333871 230 -  24206276 CCTCACAGGCCTTAAAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTC--TGTTTTCATAACTGGTG-AAAAAGAGCAGTATTAGAAGCAATTACACATTCTATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTCACTGTTTGAAAGCTGACATATTGTAGGTCATATTTTAAAGACAA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=34791.000000
s hg38.chr15_KI270850v1_alt         83780 29 +    430880 ACAGAAAGCTTATCTTTTCAAGATGGATC
s panTro4.chr15_GL392289_random    170390 29 -    187897 ATAGAAAACTTATCTTTTCAAGATGGATC
i panTro4.chr15_GL392289_random I 74804 T 74833
s ponAbe2.chr15                  17611180 29 -  99152023 ATAGAAAACTTATCTTTTCAAGATGGATA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102125395 29 + 121039945 ATAGAAAACTTATCTTTTCAAGATGGATA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106508120 29 - 171882078 ATAGAACACTTATCTTTTCAAGATGGATC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  20334101 29 -  24206276 ATAGAACACATATCTTTTCAAGATGGATA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642  0 - 162156779 I

a score=415398.000000
s hg38.chr15_KI270850v1_alt         83809 363 +    430880 TAAAGCTTAACCTTATCAAAATTACAAAATGTGAAGGATATGATTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAATAGGTTGTCTCTTAAATATTAAACTGAACAAACATTGAACTTGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGGATATTTGATAATATGGATAACaaaaagttc-----ttaagaaatttagaaaatttttaggcaaaactagaaaataatact--gataattc-taccactcagaatgtaccactatcagaattttgtatctttc--agtcatctgctcatctcttttctcctttgcttgtatgtgttccctctccctt
s panTro4.chr15_GL392289_random     95586 368 -    187897 TAAAGCTTAACCTTATCAAAATTACAAAATGTAAAGCATACGATTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAGTAGGTTGTCTCTTAAATATTAAACTGAACAAACATTGAACTTGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGGATAttttataatatggataacaaaaagttcttattttaagaaatttagaaagtttttaggcaaagctagaaaataatacc--aataattc-taccactcagaatgtaccactgtcagaattttgtatctttc--agtcatctgctcatctcttttctcctttgcttgtatgtgttccctctccctt
i panTro4.chr15_GL392289_random T 74833 I 312
s ponAbe2.chr15                  17611209 365 -  99152023 TAAAGCTTAACCTTATCAAAATTACAAAATGTAAAGGATATGATTGAAAAATATTAATGCATAGATTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAATAGGTTGTCTCTTAAATATTAAACCGTACCAACATTGAACATGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGGATATTT-ATAATATGAATAACAAAAA---CTTATTTTAAGAAATTTAGAAAATTTTTAGGCAAAACTAGAAAATAATACC--GATAATTCTTACCATTCAGAATGTACTACTATCAGAATTTTGTATCTTTC--AGTCATCTGCTCATCTCTTTTCTCCTTTGCTTGTATGTGTTCCTTCTCCCTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102125424 368 + 121039945 TAAGGCTTAACCTTATCAAAATTACAAAATGTAAAGGATATGATTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAATAGGTTGTCTCTTAAATATTAAACTGAACAAACATTGAACATGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGGATATTTTATAATATGGATAACAAAAAGTTCTTATTTTAAGAAATTTAGAAAATTTTTAGGCAAAACTAAAAAATAATACT--GATAATTC-TATCACTCAGAATGTACCACTATCAGAATCTTGTATCTTTC--AGTCATCTGCTCATCTCTTTTCTCCTTTGCTTGTATGTGTTCCCTCTCCCTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106508149 360 - 171882078 TAAAGCTTAACCTTATCAAAATTACAAAATTTAAAGCATGTGATTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAAATGTCTTTCAAAATAGGTTGACTC-------TTAAACTTAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGCTAAATTTCCCGGGGTGATGGCTATTTTATAATATGGAAAGCAAAACCTTC-----TTAAGAAATTCAGCAATTTTTTAGGCAAAACTAGAAAATATTACCTATATAATTC-TACCACTCAGAAGGTGCCACTATCAGAAATTTGTATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTTGTGTATGTTTCCTCTCCCTT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  20334130 359 -  24206276 TAAAGCTTAACCTTATCAAAATTACAAAATGTAAAGCATGTGATTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAAATGTCTTTCAAAATAGGTTGACTC-------TTAAACTGAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGTTACATTTCCTGGGGTGATAGCTATTTTATAATATGGAAAGCAAAACCTTC-----TTAAGAAATTTAGCAATTTTTTAGGCAAAACTAGAAAATATTACCTATATAATTC-TATCACTCAGAAGGTGCCGC-ATCAGAAATTTGTATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTCGTGTATGTTTCCTCTCCCTT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=453303.000000
s hg38.chr15_KI270850v1_alt         84172 441 +    430880 aaaaaatcagattttttttttgtaatctgcattttcactcaa---tattgtagatctgtgtcataagttactcctctacagtgccttcagttattgtgtgctttgtgttggatgactgtaccatctagtctttcgtgtttcctggtactgactacataggggtgagtgtgtgtgtgtgtgtgtgtg----------------------------tgtgtgtgtgtgtattttttttctaccttaactaatgctttggacatcatcaacaggtagagctaaatccttgAAACCTTCCAAGTGGTGGCTTTCAGTT---ATTGCTGAATTGGTTTTTAGAGATGGAACAAATTATATTGTATGGAAACttttttttt---tttttttttttttgagacaaagtctca-gcttgtcacccaggctggagggcaatggcatgatcttggctcactaaaacctccacctcccaggttcaagtga
s panTro4.chr15_GL392289_random     96266 441 -    187897 aaaaaatcagattttttttt-ataatctgcattttcactcaacaatattgtagatctgtgtcataagttactcctctacagtgccttcagttattgtgtgctttgtgttggataactataccatctagtctttcgtgtttcctggtactgactacataagggtgagagagagagagagagagagagagaga----------------------gtgtgtgtgtgtgtatttttttcctaccttaactaatgctttggacatca---acaggtagagctaaatccttgAAACCTTCCAAGTGGTGGCTTTCAGTT---ATTGCTGAATTGGTTTTTAGAGATGGAACAAATTATATTGTATGGAAACttttttttt---tttttttt-----gagacaaagtctca-ccttgtcgcccaggctggagagcaatggcatgatcttggctcactacaatatctgcctcccaggttcaagtga
i panTro4.chr15_GL392289_random I 312 C 0
s ponAbe2.chr15                  17611574 459 -  99152023 AAAAAATCAGATTTTTTTTT-GTAATCTGCATTTTCACTCAACAATATTGTAGATCTGTGTCATAAGTTACTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGACTGTACCATCTAGTCTTTCGTGTTTCCTGGTACTGACTACACAGGGGTgagagagagagagagagcgagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTTTTTCTACCTTAACTAATGCTTTGGACATCA---ACAGGTAGAGCTAAATCCTTGAAACCTTCCAAGTGGTGGCTTTCAGTT---ATTGCTGAATTGGTTTTTAGAGATGGAACAAACTATATTGTATGGAAACttttttttt---tttt---------gagacaaagtctca-ccttgtcgcccaggctggagggcaatggcatgatcttggctcactacaacctccacctcccaggttcaagtga
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102125792 432 + 121039945 AAAAAATCAGATTTTTTTT--GTAATCTGCATGTTCACTCAACAATATTGTGGACCTGTGTCATAAGTTACTCCTGTACAGTGCCTTCAGTTCTTGTGTGCTTTCTGTTGGATGACTGTACCATCTAGTCTTTCGTGTTTCCGGGTACTGACTACATAGGGGTGAGAGAGAGAGAGAgtgtgtg------------------------------tgtgtgtgtgtgtATTTTTTTTCTACCTTAACTAATGTTTTGGACAT-A---ACAGGTAGAGCTAAATCCTTGAAACCTTCCAAGTGGTGGCTTTCAGTT---ATTGCTGAACTGGTTTTTAGAGATGGAACAAATTATATTGTATGGAAACttttttttt---ttttttttt----gaaacaaagtctca-ccttgtcgcccaggctggagggcaatggcatgatcttggctcactacaacctccgcctcccaggttcaaatga
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106508509 436 - 171882078 -AAAAATCAGATTTTTGTTT-GTAATCTGCTTTTTCACTCAACAATATTGTAGATCCACGTCATAACTTGCTTCTCTACATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCATGCAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGgtatgtgtgtgtgtgcgtgcg--------------------------------cgtgtgtgCGCGTATTTTTTT-CTAACTTAACTAATGCTTTAGACATCA---ATAGGTAGACCTAAATCCTTGAAACCTTCCACGTGGTGACTTTCAATTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAACttttttttcctttttttttt-----gagatgaagtcttgttcttgtctcccaggctggagtgcaatggcgtgatcacagctcactgcaacctccgcctcccgggttcaagtga
i macFas5.chr7                  C 0 I 87
s chlSab2.chr29                  20334489 429 -  24206276 -AAAAATCAGATTTTTGTTT-GTAATCTGCTTTTTCACTCAACAATATTGTAGATCCACATCATAA----TTTCTCTCCATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCGTGTAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGgtgtgtgtgtgtgtgcgtgcg--------------------------------cgtgtgtgtgcgtAGTTTTTT-CTAACTTAACTAGTGCTTTAGACATCA---GTAGGTAGACCTACATCCTTGAAACCTTCCACATGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATGTTGTATGGGAACtttttttcc---tttttttt-----gaggtgaagtcttgttcttgtctcccaggctggagtgcaatggtgtgatcacagcttactggaacctctgcctcctgggttcaagcga
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=87379.000000
s hg38.chr15_KI270850v1_alt         84613 75 +    430880 tcctcttgcctcagcctcccgagtagttgg-gattacaggggcctgccaccatgcccggctaatgtttgtgttttt
s panTro4.chr15_GL392289_random     96707 75 -    187897 ttctcttgcctcagcctcccgagtagttgg-gattacaggtgcttgccaccatgcccggctgatttttgtgttttt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17612033 75 -  99152023 ttctcttgcctcagcctcccgagtagttgg-gattacaggtgcctgccaccatgcccagctaatttttgtgttttt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126224 75 + 121039945 ttctcttgcctaagcctcccgagtacttgg-gattacaggtgcctgccaccatgcccagctaatttttgtgttttt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65242970 75 + 171882078 ttctcctgcctcagcctcccgagtagcagg-gattacaggagcctgccaccatgcctggctaatttttgtattttt
i macFas5.chr7                  I 2313 C 0
s chlSab2.chr29                  20334918 76 -  24206276 ttctcctgcctcggcctcccaagtagctggtgcgtgcaggtgcgtgccaccatgcctggctaatttttgtattttt
i chlSab2.chr29                 C 0 I 47568
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642  0 - 162156779 I

a score=1182060.000000
s hg38.chr15_KI270850v1_alt         84688 955 +    430880 actagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggtctcccaaagtactgggattacaggcatgagccaccatacccagccTTTTTTTCTTCTAGGTACCAGCTTTTATTTATCAGATTGGTATAAATGTTAGAAAGCGTGCAATGAAATGGGCATTTTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCATTCTAGAAACTTGCCTAACCTCTTCCCATTTAGACAAGATGAATTCTGAC-------AGG--GCCAGCCTTGTCCCTGTGATTCCGTATCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGCGGGCCGGTAGAGTCCTTTGGTCAGGTTTTGTGTCAAGAGAGGGATGTGGAAAGATGGGAGAGAGGTAGCAAAACTGGCCTCAATGGAACTGTGTAAGTTAACATAGAATGGCAAAGGAATGTTTCTTCCAAGGAAGAAATTCTAGGGAAGGAATAAAGTAGAGGGGAAGGcagcagttctcaaagttttggggtcaggattcctttacactcttaaaagtatattgagggcccaaggagcttttgtgtatgtgggttatatctattggtatttatcactagaaattaaatcagaaatacttaaaatattccttaaAAGCTCACAAAATATTGTTATAAATGCTTTTATGATAAGAAAATTTCTAAACCCAAGGTAGTACAGTCTTACATCTTTTGCAAATTTCTTTGATGTTTGATATGTCATTTGTACCTGCATTCAATTTATTGTGTGATATTTGCTTG-AAAAAATGTGAACAAAGGACAGTCTCATACAGATAGGCATTTCAGATCATTGTGGATATTTCTTTTTTCtttcttt
s panTro4.chr15_GL392289_random     96782 954 -    187897 actagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggcctcccaaagtactgggattacaggcataagccaccatacccagccTTTTTTTCTTCTAGGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCATTCTAGAAACTTGCCTAACCTCTTCCCATTTAGGCAAGATGAATTCTCACTACCCGTAGGTGGCCAACCTTGTCCTTGTGATTCCATATCTTCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGAGGTCGGCCGGTAGAGTCCTTTGGTCAGGTTTTGTGTCAAGAGAGGAATGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTATGTAAGTTAACATAGAATGACAAAGGAATGTTTCTTCCAGGGAAGAAATTCTAGGGAAGGAAGAAAGTGGAGGGGAAGGcagcagttctcgaagttttggggtcaggattcctttacactcttaaaagtatattgagggcccaaggagcttttctgtatataggttatatctattggtatttatcactagaaattaaatcagaaatacttaaaatattccttaaaagctcaccaaattttgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagtacaatcttacaccttttgcaaatttcgttgatgtttgatatgtcatttgcacctgcattcaatttattgtgtgatatttgcttg-aaaaaatgtgaacaaagaacaatctcatacagataggcatttTAGATCCTTATGGAtatttatttt----------
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17612108 964 -  99152023 actagaggtggagtttcatcgtgttggccaggcttgtctcgaacacctgacctcaggtgatccactcaccttggcctcccaaagtactgggattacaggcatgagccaccatacccagccTTTTTTTCTTCTAGGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAACTGGGCATTCTCACAGTCATGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCCGTCTGGCATTCTAGAAACTTGCCTAACCTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCTAGGTGGCCAATCTTGTCCCTGTGATTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTGATCACTGGAAATGGGGTGGGCCAGTAGAGTCCTTTGGTCAGGTTTTGTGTCAAGAGAGGGATGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAGTGGAACTATGTAAGTTAACATAGAATGGCAAAGGAATGTTTCTTCCAAGGAAGAAATTCTAGGGAAGGAAGAAAGTGGAGGGGAAGGcagcagttctcaaagttttggggtcaggattcctttacactcttaaaagtatattgagggtccaaggagcttttctgtatataggttatatctattggtatttatcactagaagttaaatcagaaatacttaaaatattccttaaaagttcaccaaatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagtacaatcttacatcttttgcaagtttctttgatgtttgatatgtcatttgcacctgcattcaatttattgtgtgatatttgcttg-aaaaaatgtgaacaaaggacagtctcatacagataGCCATTTTAGATCATTATGGATATTTCTTTTTTTTTTTTTT
i ponAbe2.chr15                 C 0 I 1763
s nomLeu3.chr6                  102126299 924 + 121039945 actagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcgggtgatccactcaccttggcctcccaaagtactgggattacaggcatgagccaccatacccagccTTTTTTTCTTCTGGGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCA-TCTAGAAACTTGCCTAACCTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCTAGGTGGCCATCCTTGTCCCTGTGATTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGTGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCCGGTAGAGTCCTTTGGTCAGGTTTTGTGTCAAGAGCGGGATGTGGAAAGATGGGAGAAAGATAGCAAAACTGGCCTCAATGGAACTATGTAACTTAACATAGAATGGCAAAGGAATATTCT-------------ATTCTAGGGAAGGAAGAAAGTGGAGGGGAAGGcagcagttctcaaagttttggggtcaggattcctttacactct------tatattgagggcccaaggagcttttctgtatataggttatatctattggtatttatcattagaaattaaatcagaaatacttaaaatattccttaagagctcaccaaatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagtacaatcttacatcttttgcaaatttctttgatgtttgatatgtcgtttgcacctgcattcaatttattgtgtgatatttgcttg-aaaaaatgtgaacaaaggacagtctcatacagataGCCATTTTAGATCATTATGGA--------------------
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65243045 953 + 171882078 agtagagatggggtttcatcatgttggccgggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggccTTTTTTTCTTCTAGGTACCAGCTTTTACTTATCAGATTGGTAAAAATACTAGAAAGTGTGCAATGAAATGTGCATTCTCACAGTCATGGCAGAAAGTATAATTATCTTTGACTTTCCAGAAAGCAGTTTGGCTTTCTAGAAACTTGCCTAACCTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCAAGGTGGCCCATCTTGTCCTTGTGGTTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCTGGTAGACTCCTTTGGTCAGGTTTTGTGTCAAGAGAAGGATGTGGAAAGACGGGAGAGAGGTAGCAAAACTGGCCTCAATTGAACTAAATAAGTTAACGTAGAATGGCAAAGGAATGTTTT-TCCAAGGAAGAAATTCAAGGGAAGGAAGAAAGTGGAGGGGAAGAcagcagttctcaaagttttggggtcaggatacctttacactcttaaaaatatattgagggcccaaggagcttttgtgtatgtaggtgatatctactggtatttatcactagaaattaaatcagaaatattcaaaatattctttaaaggttcaccaaatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagtacaatctta-atcttttgcaaatttctttggtgtttggtatgtcatttgtgtctgcattcaatttattgtgtgatatttgcttgaaaaaaatttgaacaaaggccaatgtcatacagataGCCATTTTAGATCATTGTGGATAtttctttt----------
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3818646 952 +  24206276 agtagagatggggtttcaccatgttggccaggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggccTTTTCTTCTTCTAGGTACCAGCTTTTACTTATCAGATTGGTAAAAATATTAGAAAGTGTGCAATGAAATGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATCTTTGGCTTTCCAGAAAGCAGTTTGGC-TTCTAGAAACTTGCCTAACCTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCAAGGTGGCCAATCTCGTCCCTGTTGTTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCTGGTAGACTCCTTTGGTCAGGTTTTGTGTCAAGAGAAGGATGTGAAACGACGGGAGAGAGGTAGCAAAACTGGCCTCAATGGAACTAAGTAAGTTAACGTAGAATGGCAAAGGAATGTTTT-TCCAAGGAAGAAATTCAAGGGAAGGAAGAAAGTGGAGGGGAAGgtagcagttctcaaagttttggggtcaggattcctttacactcttaaaaatatattgagggcccaaggagcttttctgtatgtaggtgatatctactggtatttatcactagaaattaaatcagaaatattcaaaatattctttaaaggttcaccaaatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagtacaatctta-atcttttgcaaatttctttggtgtttggtatgtcatttgtgtctgcattcaatttattgtgtgatatttgcttgaaaaaaatttgaacaaaggccagtgtcatacagaTAGCCATTTTAGATCATTGTGGAtatttctttt----------
i chlSab2.chr29                 I 2675 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=848.000000
s hg38.chr15_KI270850v1_alt         85643 11 +    430880 ctttctttttt
s panTro4.chr15_GL392289_random     97736 10 -    187897 -tttatttttt
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102127223  3 + 121039945 --------ttt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65243998  6 + 171882078 -----tctttt
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3819598  6 +  24206276 -----tctttt
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642  0 - 162156779 I
e ponAbe2.chr15                  17613072 1763 -  99152023 I

a score=233169.000000
s hg38.chr15_KI270850v1_alt         85654 191 +    430880 ttttttttttgagatggggtctttctctgtctcccaggctggaatgcagtgctatgatcacggctcactggagcctcattctctggggactcaggtgatcctcccacc-------tcagcctctagagtagctgggactacaggtgtgtactaccccaccttgctaattttttgtattttttgtagagatagggtttt
s panTro4.chr15_GL392289_random     97746 191 -    187897 ttttatttttgagatggggtctttctctgtctcccaggctggaatgcagtgctatgatcatggctcactggagcctcattctctggggactcaggtgctcctcccacc-------tcagcctccagagtagctgggactacaggtgtgtactactccacctagctaattttttgtattttttgtagagacagggtttt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17614835 191 -  99152023 tttcttttttgagatggggtctttctctgtctcccaggctggaatgcagtgctgtgatcacggctcactggagcctcattctctggggactcaggtgatcctcccacc-------tcagcctccagagtagctgggactacaggtgtgtactaccctacctagctaattttttgtattttttgtagagatagggtttt
i ponAbe2.chr15                 I 1763 C 0
s nomLeu3.chr6                  102127226 198 + 121039945 ttatttttttgagatggggtcttgctctgtctcccaggctggaatgcagtgctatgatcacagctcactggagcctcattctctggggaatcaggtgctcctcccaccccagcctccagcctccagagtagctgggacaacaggtgtgtactaccccacctagctaattttttgtattttttgtagagacaaggtttt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65244004 191 + 171882078 tcttttttttgagatggggttttgctctgttgcccaggctggaatgcagtggtatggtcatggatcactggagcctcagtctctggggactcaggtgatcctcccacc-------ttagcctccacagtagttgggactacaggtgtgtgctaccacacctagctacttttttgtatttttcgtagagacagggtttt
i macFas5.chr7                  C 0 I 4107
s chlSab2.chr29                   3819604 191 +  24206276 tcttttttttgagatggggtcttgctctgttgcccaggctagaatgcagtggtatggtcatggatcactggagcctcagtctctggggactcaggtgatcctcccacc-------ttagcctccacagtagttgggactacaggtgtgtactaccacacctagctatttttttgtatttttcatagagacagggtttt
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=5210.000000
s hg38.chr15_KI270850v1_alt         85845 4 +    430880 gcca
s panTro4.chr15_GL392289_random     97937 4 -    187897 gcca
i panTro4.chr15_GL392289_random C 0 I 74491
s ponAbe2.chr15                  17615026 4 -  99152023 gcca
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102127424 4 + 121039945 gcca
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106509032 4 - 171882078 GTCA
i macFas5.chr7                  I 87 C 0
s chlSab2.chr29                   3819795 4 +  24206276 gcca
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=295.000000
s hg38.chr15_KI270850v1_alt         85849 1 +    430880 t
s panTro4.chr15_GL392289_random    172432 1 -    187897 t
i panTro4.chr15_GL392289_random I 74491 C 0
s ponAbe2.chr15                  17615030 1 -  99152023 t
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102127428 1 + 121039945 t
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106509036 1 - 171882078 A
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3819799 1 +  24206276 t
i chlSab2.chr29                 C 0 I 3829
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=2910.000000
s hg38.chr15_KI270850v1_alt         85850 3 +    430880 AGG
s panTro4.chr15_GL392289_random    172433 3 -    187897 AGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17615031 3 -  99152023 AGG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102127429 3 + 121039945 AGG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106509037 3 - 171882078 AGG
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3819800 3829 +  24206276 I
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=304607.000000
s hg38.chr15_KI270850v1_alt         85853 300 +    430880 TATTCAAATAGAAAGTTTTGTTTTTGT-TTTAGTATATAAAGAAATATAACTTTCCATGTTGGAAAAATTTTTAAAACCttttt----ttaattttaaaactcataagcaacc--------------attgttgagaaaattggtaaagtacagaaaagataaaagaaaaaaattaaagtctcccataatttctctatctaatata---------accactattgactgttgacatgatgg-------tcattttctaccagtatatatttt-ttctttgctattaaaatacata-acccttacacatatgctt-aatagttgaggtcatattctcta
s panTro4.chr15_GL392289_random    172436 301 -    187897 TATTCAAATAGAAAGTTTTGTTTTTGT-TTTAGTATATAAAGAAATATAACTTTCCATGTTGGAAAAATTTTTAAAACCttttt----ttaattataaaactcataagcaacc--------------attgttgagaaaattggtaaagtacagaaaagataaaagaaaaaaattaaagtctcccataatttctctatctaatata---------accactattgactgttgacatgatgg-------ccattttctaccagtatatatttt-ttctttgctattaaaatacata-acccttacacatatgtttaaatagttgaggtcatattcccta
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17615034 317 -  99152023 TATTCAAATAGAAAGTTTTGTTTTTGT-TTTAGTATATAAAGAAATACAACTTTCCATGTTGGAAAAATTTTAAAAACCttttt----ttaattataaaactcataagcaacc--------------attgttgagaaaattagtaaagtacagaaaagagaaaagaaaaaaattaaagtctcccacaatttctctatctaatataaccactattaccactattgacagttgacatgatggccattttccattttctaccagtatatatttt-ttctttgctagtaaaatacata-acccttatgcatatgtttaaatagttgaggtcgtattctcta
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102127432 275 + 121039945 TATTCAAATAGAAAGTTTTGTTTTTGT-TTTAGTATAT-------------------------AAAAACTTTAAAAACCttttt----ttaattataaaactcataagcaacc--------------attgttgagaaaattagtaaagtacagaaaagagaaaagaaaaaaattaaagtctcccataatttctctacctaatata---------accacta-tgacagttgacctgatgg-------ccattttctaccagtgtatatttt-ttctttgctagtaaaatgcata-acccttatacatgtgtttaaatagttgaggtcatattctcta
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106509040 287 - 171882078 TATTCAAATAGGAAGTTTTGTTTTTATCTTTAGTATATAAAGAAGTATAACTTCCCATTTTGCAAAAACTTTAGAAACCttttttttcttgattataaaacttgtaaagaacc--------------attattgagaccagtagtaaaatata--------------aaaaaattaaaatctcacataatttctctacctaatata---------accact-------gttgacatgatgg-------ctagtttctatcagtatgtattttgttttttgttatcaaagtacatatacccttacagatatttttaaatagttgaggtcatattctata
i macFas5.chr7                  C 0 I 18636
s chlSab2.chr29                   3823629 316 +  24206276 TATTCAAATAGAAAGTTTTGTTTTTGTTTTTAGTATATAAAGAAATATAACTTTCCATGTTGGAAAAATTTTAAAAACCTTTTTT---TAAAATCTAAAACTCATAAGCAACTTCATAATTCTCATAATTACtaagaaaattagtaaagtacagaaaagaaaaaag-aaaaaattcaaatctcccataatttctctacctaatata---------accactattgacagttgacatcatgg-------cctttttctaccagtatatatttt-ttctttgctagtaaaatacata-acccttatacatatgtttcaatagttgaggtcatattctcta
i chlSab2.chr29                 I 3829 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=958070.000000
s hg38.chr15_KI270850v1_alt         86153 797 +    430880 tagttt----------------tatatatatatatatatatatattttttttttttttttttttttttttttgagacagagtcttgctctgtcacccaggctggagtgcagtgccgtggtctcggctcactgcaagctccacctcctgggttcccaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccattcccggctaattttttgtattttttagtagagatggggttccaccgtgttagccaggatggtctcgatctcctgacctcatggtctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggccCTTTTATATTCTTTTAAAAAGTATTTACTGTATTTTCCTGTGATGTCATAGTCTTTATAGAaaaat---aatcattattttcagttgacatgattgtttacctaaaaatatccaaaggaaccaactgagaaaaaacaatttttaagattactggttaaaagttcttttatataaaaatcaatagccttccccaatgttagctataatcacatagaagatatagtgatgaagtattttttcaggtatttcagcaaaaattaaatgcctaggaataaacttagatgtgcaggacttttatcaaggacaggacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaccaTGTCTTCATATTAATTTGTAAATGTAATTTCTgctgggcacagtggctcatacctgtaatccaaac
s panTro4.chr15_GL392289_random    172737 774 -    187897 tagttt----------------tata----------------------ttctttttttttttttttttttttgagacagagtctcgctctgtcacccaggctggagtgcagtgccgtgatctcggctcactgcaagctccacctcctgggttcccaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccattcccggctatttttttgtattttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatggtctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggccCTTTTATATTCTTTTAAAAAGTATTTACTGTATTTTCCTGTGATGTCATAGTCTTTATAGAaaaat---aatcattattttcagttgacatgattgtttacctaaaaatatccaaaggaaccaactgag-aaaaacaatttttaagattactggttaaaagttcttttatataaaaatcaatagccttccccaatgttagctataatcacatagaagatatagtgatgaagtattttttcaggtatttcagcaaaaattaaatacctaggaataaacttagatgtgcaggacttttatcaaggacaggacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaccaTGTCTTCATATTAATTTGTAAATGTAATTTCTgctgggcacagtggctcatacctgtaatccaaac
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17615351 772 -  99152023 tagttt----------------tata---------------------------ttcttttttttttttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggactacaggcgcctgccaccatgcccggctaattttttgtattttttactagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatctgcccacctcggcctcccaaaatgctgggattacaggcgtgagccactgtgcccggccgttttatattcttttaaaaagtatttactgtattttcccatgATGTCATAGTCTTTATagaaaaataacaatcattattttcagttgacatgattgtttacctaaaaatagccaaaggaaccaactgaa-aaaaacaatttttaagattactggttaaaagttcttttatataaaaatcaatagccttccccaatgttagctataatcacatagaagatatagtgatgaagtattttttcaggtatttcagcaaaagttaaatacctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagtggaatgaaagatttgcattctgtgttcctggatgagcagatttcatgttataaatatgTTAGTTATCACCATGTCTTCATATTAATTTATAAATGTAATTTCTgctgggcacagtggctcatacctgtaatccgaac
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102127707 763 + 121039945 tagttt----------------tata-----------------------------ttcttttttttttttttgagacagagtctctctctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccatgcccggataactttctgtattttttagtagaggtggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcccaccctggccttccaaaatgctgggattacaggtgtgagccactgcgcctggcTGTCTTATATTCTTTTAAAAAGTATTTACTGTATTTTCCCATGATGTCATAGTCTTTATagaaaaataacaatcattattttcagttgacgtgattgtttacctaaaaatagcc-aaggaaccaactgaa-aaa---aatttttaagattactggttaaaagttcttttatataaaaatcaatagccttccccaatgttagctataatcacatagaagatataatgatgaagtattttttcaggtatttcagcaaaaattaaatacctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagaggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatacgttagttatcaccaTGTCTTCATAT---TTTATAAATGTAATTTCTgctgggcacggtggctcatacgtgttatccgaag
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65248302 786 + 171882078 aagTTTTTAatatatatatatatata----------------------------tatatatatttttttttcgagatggagtcttgctctgttgccaaggctggagtgcagtggtgcaatctggactcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggactgcaggtgcccaccaccatactcggctaattttttgtattttttaatagagacggggtttcaccatgttagccaggatggtctcgacctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctggcatcataggc-tgagccactgcacccggcccttttatattctTTTAAGAAGTATTTACTGTATTTTCCCATGATGTCATAGTCTTTAaagaaaaataacaatcattattttcagttgacgtgattgtttacctaaaaatatccaaaggaactaactgaa-aaaaacaatatttaagattactggttaaaagctcttttatataaaaatcattagccttccccaatgttggctataatcacttagaagatatagtgatgaagtattttttcatgtatttcagcaaaaattaaatatctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaacatgtcttcatattaatttataaatgtaatTTCTgctgggcacagtggctcatacctgtaatcccgaa
i macFas5.chr7                  I 4107 I 7673
s chlSab2.chr29                   3823945 771 +  24206276 aagttt----------------taTA----------------------------TATATATATAtttttttcgagatagagtcttgctctgttgcccaggctggagtgcagtggtgcaatctcgactcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggattgcaggtgcccaccaccatacccggctaattttttgtattttttaatagagacggggtttcaccatgttagccaggatggtctcgacctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattataggcatgagccactgcacccagccCTTTTATATTCTTTTAAGAAGTATTTACTGTATTTTCCCATGATGTCATAGTCTTTatagaaaaataacaatcattattttcagttgacgtgattgtttacctaaaaatatccaaaggaactaactgaa-aaaaacaatttttaagattactggttaaaagctcttttatataaaaatcattagccttccccaatgttggctaaaatcacatagaagatatagtgatgaagtattttttcatgtatttcagcaaaaattaaatatctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaccatgtcttcatattaatttataaatgtaATTTctgctgggcacagtggctcatacctgtaatcccaaa
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=2545594.000000
s hg38.chr15_KI270850v1_alt         86950 2203 +    430880 agtttgggaagctgaggcgggtagatgacaattagctgggtgtctgtggcacacacttgtatttccaactacttctgaggctgaggtgggaggagcacttgagcctgggaggcagaggttgcagtgagccgagatcatgcctctgaactccagcctaggtgacagagtgagaccctgtctcaaaaaaaaaaaaaaaaaaa-------aAAACTAGAAAAGTGTGTGTGtatatatatatatttcatattt--tataaatatttatatatataaattgtatatatacattttatattttatatatagtgtgtgtgtattatatatatataCACACACACACAAATTTCAGTACAAATTCTGGCAGATTTATTTTTGACACTTGACAAAACGACTCTAAAATTTGTTTAGAAGAATAAGTAATAAAAATTAATAAAGTATAGACTCTTTCAACCAGatagtaaataaaatattgtggactatccctgggccagacagataaaggcaatggaagtttagaaccagagtcatgcaaacgagaa-tttagtataaggaaaaggtggtattttaacttaatactgaaaagatagattattctgtaaatggttttaggagaact----atttgaggaagtctgagtcttaactccaatttTTGTCAAAATAAGTT--AGTTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAGAATATTGGTTTGAAGATATTTTAAGAGTTAAGGCTGAggctgggcacagtggttcacgcctgtaatcccagcactttgcgaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggcaacatagcaagactct-------------ttctctCTCTCTCTCTCTCGat------------------------------------------atagatatacatataaatatacgtatacaaataGAAAAAAAAAAGAGTTAAGTTTTATATGGAGAGCCATGAAGATAAGAGGTAAAAATTAAAGGCTTGATGGACACATGTTTAC--ATCTCCATCAAGGGGGTTGATGGGAAAGAATGATAGACATAGCTCCATTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAACATCTAAAGATATCAGTTTTATAAT---AGAAATGAGTTATTTTTCAGTGTCTAAAACACCacatgagatacatacatacatgcatacatacataaatatgttcataAAGTTAAATGAAATAGGATATAAAATTGGGCCTAGTGTTT-AAAAGGTAAATATATTTACATGAAGGAGAAAACAACTCACCTCCCACTCTTAGAGCCTCTGCCAGTTTATCATAGCCTAGTTTCTTGAGAGAATAAGCTACATGTCTTCACCTTTTTTCACTGAGCTCATTATACTCTGGATTCTGCCTTCATCGTTGCACTAAAATTTatctcctagttgtcaaatccagtggctcccctcttagtccccaaattgtcccctctgcagtattttgatactgttgattgttcctttgttgaaacattcctccattcttaatgtccaccaataaagagttggttaaataaaaattatagtgtaccgttttat-----aatattctgttgttctgttgtggacc---aaaaaatgcagccagtctttccataagagcacgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtgtataatctgACCCCTTTAG--TACACAGTGTAAAAACATCTGTGTCTGTGCTTCTTTATACTTACTTTTTTCTCCCCTGGTGAATACAGGAAACTGTGAGTAGTACAACACAATTAAAAAAAAAAAAACTGTGTGTCTGCTGCACCAGGACCTGTGATAATTGGGTATAAAAGAC-----------AAAAAAGACATGTCCCTGTCCTCTGGGAAGGGACATGATAATCAAATGAGACTTCTGTCGGATTCTTTTCTCCTGTTTTGATCTTATCACCCTTTCTTGGTCTCCTCCGATCTCTTCTTCCTTgtcctac----ttcttctcttctcattctgtgctttctctgagtaatctttgactcccattacttaagtcatgacctgtgttccagggactcctaaatttgtattcatctccagagtttcaaacccatatatctgtctgtatatcatatat-ttagggaatctcacttggagtgacatgggtgttcaaaatgatgatatttaaaTTTTCACGTATCCATCTCCTAGCACTCTAT---------------------------------------------------------------------CTAGTCACATATGCCTAAACCTGGGAACTG
s panTro4.chr15_GL392289_random    173511 2186 -    187897 agtttgggaagctgaggcgggtagatgacaattagctgggtgtctgtggcacacacatgtatttccaactactcctgaggctgaggtgggaggagcacttgagcctgggaggcagaggttgcagtgagccgagatcatgcctgtgaactccagcctaggtgacagagtgagaccctgtctcaaaaaaaaaaaaaaaagaa-------------aGAAAAATGTGTGTGtatatacatatatttcatattt--tataaatatttatatatataaattatatatatacattttatattttatatatagtgtgtg-----tatatatatataCACACACACACAaatttcagtacaaattctggcagatttatttttgacacttgacaaaacgactctaaaatttgtttagaaGaataaataataaaaattaataaaGTATAGACTCTTTCAACCAGATAGT-AGTAAAATATTGTGGACTATTCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAACGAGAA-TTTAGTATAAGGAAAAGGTGGTATTTTAACTTAATACTGAAAAGATAGATTATTCTGTAAATGGTTTTAGGAGAACT----ATTTGAGGAAGTCTGAGTCTTAACTCCAATTTTTGTCAAAATAAGTTACAGTTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAGAATATTGGTTTGAAGATATTTTAAGAGTTAAGGCTGAggctgggcacagtggttcacgcctgtaatcccagcactttgcgaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgagcaacatagcaagactct-------------ttctctctctctctctctcGat------------------------------------------atagatatacatataaatatacatatacaaataG-AAAAAAAAAGAGTTAAGTTTTGTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAAAGGCTTGATGGACACATGTTTAC--ATCTCCAGCAAGGGGGTTGATGGGAAAGACTGATAGACATAGCTCCATTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAACATCTAAAGATATCAGTTTTATAAT---AGAAATGAGTTATTTTTCAGTGTCTAAAACATCACATGAGatacatacatacatgcatacatacataaataTGTTTATAAAGTTAAATGAAATAGGATATAAAATTGGGCCTAGTGTTT-AAAAGGTAAATATATTTACATGAAGGAGAAAACAACTCACCTCCCACTCTTAGAGCCTCTGCCAGTTTATCATAGCCTAGTTTCTTGAGAGAATAAGCTACATGTCTTCACCTTTTTTCACTGAGCTCATTATAATCTGGATTCTGCCTTCATCGTTGCACTAAAATTTatctcctagttgtcaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattttgatactgttga----tcctttgttgaaacattcctccattcttaatgtccaccaataaagagttggttaaataaaaattatagtgtaccgttttataatagaatattctgttgttctgttgtggacc---aaaaaatgcagccagtctttccataagagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtgtataatctgACCCCTTTAG--TACACAGTGTAAAAACATCTGTGTCTGTGCTTCTTTATACTTACTTTTTTCTCCCCTGGTGAATACAGGAAACTGTGAATAGTACAACACAATT--AAAAAAAAAAACTGTGTGTCTGCTGCACCAGGACCTGTGATAATTGGGTAT--------------------AAAAGACATGTCCCTGTCCTCTGGGAAGGGACATGATAATCAAATGAGACTTCTGTCGGATTCTTTTCTCCTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCCTTGTCCTACTTCTTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAATCTTTGACTCCCGTTACTTAAGTCATGACCTGTGTTGCAGGGACTCCTAAATTTGTATTCATCTCCAGAGTTTCAAACCCATATATCTGTCTGTATATCATATAT-TTAGGGAATCTCACTTGGAGTGACATGGGTGTTCAAAATGATGATATTTAAATTTTCACGTATCCATCTCCTAGCACTCTAT---------------------------------------------------------------------CTAGTCACATATGCCTAAACCTGGGAACTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17616123 2212 -  99152023 agtttgggaagctgaggcgggtagatgacaattagctgggtgtctgtggcacacacttgtagttccagctactcctgaggctaaggcaggaggatcacttgagcctgggaggcagaggttgcagtgagctgagatcatgcctctgaactccagcctaggtgacagagtaagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGTGTGTATATATACACGTTTtatattttatatatatatttatatatataaattgtgtat-----------------------gtatgtg-----tatatat--------------aCAaatttcagtagaaattccagcaggtttatttttggcacttgacaaaatgactctaaaacttgtttagaagagtaaataataaaaaataataaagtatagactctttcaaccagatattaaataaaatattgtggactagccctgggccagacagataaaggcaatggaagtttaaaaccagagtcatgcaagtgagaa-tttagtataaggaaaaggtggtattttaacttaatagtgaaaagatagattattctgtaaatagttttaagagaactggCCATTTGAGGAAGTTTCAGTCTTAACTTCAATTTTTGTCAAAATA------AGTTGGTTTAAACACATCTATTCTTAAAAAGCAGAACAGAAGAACATTGGTTTGAAGATATTCTACGAGTTAAGGCTGAGgctgggcacagtggatcccg-ctgtaatcccagcacttt-caaggccagggtgggaggattgcttgagcccaggagtttgagatcagcctgggcaacacagcaagac-----------------tctctctctCTCTCTCTCGat------------------------------------------atagatatacatataaatacacatatacagat---acaAAAAAAGAGTTAAGTTTTGTATGGAGAGCAATGAAGATGAGAGGTAAAAATTAAAGGCTTGATGGACACATGTTTAC--ATCTCCAGCAAGGGGGTTGATG-----GAATGATAGACATAGCTCCATTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAACATCTAAAGATAACAGTTTTATAATAGCAGAAATGAGGTTTTTTTCAATGTCTAAAACATTACATG------------ACATATATACATACATAAACATGTTCA-AAAGTTAAATGAAGTAGGATATAAAATTGGGCCTAGTGTTTAAAAAAGTAAATATATTTACATGAAGGAGAAAACAActcacctcccactcttacagcctctgccagtttatcatagcctagtttcttgagagaataagctacatgtcttcaccttttttcactgagctcattataatctggattctgccttcatcgttgtgccaaaatttatctcctagttgccaaattcagtggctcccctcttagtccccaaattgacccctctccagtattttgatattgttgattgttcccttgttgaaacattCCTCCGTTcttaatgtccaccagtaaagagctggttaaataaaaattatagtgtacagttttataatagaata--------ttctgttgtagacccaaaaaaaatgcaaccagtctttccataagagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtatataatctgacccctttagtataTACAGTGTAAAAAAATCTATGTCTATGCTAGTTTATACTTGGTTTTTTCTCCCCTGGTAGATACAGGAAAC--TGAATAGTAGAACACAATT-----TAAAAAGACTGTGTGGCTTCTGCACCAGGACCTGTGATAATTGGGTATAAAAGAC-----------AAAAAAGGCATGTCCCTGTCCTCTGGGAAGGGACATGATAATCAGTTGGGACTTTTATCAGATTCTTTTCTCCTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCCTTGTCCTACTTCTTTCTTCTCTTCTCGTTCTGTGCTTTCTCTGAGTAATCTTTGACTCCCATTACTTAAGTCATGACCTGTGTTCCAGGGATTCCTAAATCCGTATTCATCTCCAGAGTTTC-AACCAATATATCTGTCTGTATATCATATATGTTAGGGAATCTCACTTGGCGTGACATGGGTGTTCAAA---ATGATATTTAAATTTTCATGTATCCACGTCCTAGCATTCTATCAGCCCCATCATGTATTCCATCAATAATTCTCCTTGTCATTGTGAGTAGGACAAAATGAAATAATCAAACTAGTCATCCATGCCTAAACCTGGGAACTG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102128470 2211 + 121039945 agtttgggaagctgaggagggtagatgacaattaactgggtgtctgtggcacacacttgtagttccaaccactcctgaggctaaggcgggaggatcccttgagcctgggaggcagaggttgcagtgagccgagatcattcctctgaactccagcctaggtgacagagtaagaccctgtctcaaaaaaaaaaaaaaaaaaa-----aagaaaagaaaaaaaaGCGTGTGtatatatacacattttatattttatatatatatttatatatataaattttgtat-----------------------gtatgtg-----tatatat--------------aCAaatctcagtagaaattccagcagatttatttttggcacttgccaaaatgactctaaaat---tttagaagagtaaataataaaaaataataaagTATAGACTCTTTCAATCAGATATTAAATAAAATATTGTGGACTAGCCCTGGGTCAGACAGATAAAGGCAATGGAAGTTTAAAGCCAGAGTCATGCAAATGAGAA-TTTAGTATAAGGAAAAGGTGGTATTTTAACTTAATAGTGAAAAGACAGATTATTCTGTAAATAGTTTTAGGAGAACTGGCCATTTGAGGAAGTTTGAGTCTTAACTTCAATTTTCGTCAAAATAAGTTGTAATTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAGAACATCGGTCTGAAGATATTTTAAGAGTTAAGGCTGAggctgggcacagtgattcacacttgtaatcccagcagttt-caaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggcaacatagcaagac-------------------tctctctctCTCTCtagat------------------------------------------atagatatacatataaatacacatatacagat---acaAAAAAAGAGTTAAGTTTTGTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAAAGGCTTGATGGACACATGTTTAC--ATCTCCAGCAAGGGGATTGATG-GAAAGAATGATAGACGTAGCTCCATTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAATATCTAAAGATAACAGTTTTATAATAGCAGAAATGAGGTTTTTTTCAGTGTCTAAAacattacata------------acatacatacatacataaacataTTCA-AAAGTTAAATGAAGCAGGATATAAAATTGGGCCTAGTGTTTAAAAAAGTAAATATATTTACATGAAGGAGAAAACAActcacctcccactcttacagcctctgccagtttatcatagcctagtttcttgagagaataagctacatgtcttcaccttttttcactgagctcattataatctggattctgccttcatcattgtgctaaaatttatctcctagttgccaaatccagtgacttccctcttagtccccaaattga-ccctctgcagtattttgatattgttgattgttcccttcttgaaacattcctccattcttaatgtccaccagtaaagagttggttaaataaaaattatagtgtacagttttataatagaata--------ttctgttgtagacc-aaaaaaaatgcagccagtctttccataaaagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtatataatctgacccctttag--tatacagtgtaaaaaaatctatgtctgtgctagtttatacttgcTTTTTTCTCCCC-GGTGGATATAGGAAACTGTGAATGGTAGAACACAATT-----AAAAAAGACTGTGTGGCTTCTGTGCCAGGACCTGTGGTAATTGGGTATAAAAGAC-----------AAAAAAGGCATGTCCCTGTCCTCTGGGAAGGGACATGATAATTGAATGGGACGTTTATTGGATTCTTTTCTCCTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGGTCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAATCTTTGACTCGTATTACTTAAGTCATGACCTGTGTTCCAGGGATTCCTAAATCCGTGTGCGTCTCCAGAGTTTCAAACCCATATATCTGTCTGCATGTCATATATGTTAGGGAATCTCACTTGGTGTGACATGCGTGTTCAAA---ATGATATTTAAATTTTCATGTATTCACCTTATAGCACTCTATCAGCCACATCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGAGTGGGACAAAATGAAATAATCAAACCAGTCACCCATGCCTAAACCTGGGAACTG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65256761 2280 + 171882078 AGTTTGGGAAGCTGAGGTGAGTAGATGACaattagctgggtgtctgtggcacacacctgtagttccaactactcctgaggttgaggcaggaggatctcttgagcctggaaggcagaggttgcagtgagccgagatcatgcctctgaactccagcctacatgacagagtgagatcctgtctcaaaaaaaaaaaaaaaaa---------------------GTGTGTGTGTGtatatatattttttatattt--tatatctattcatatatatatattgt---------------------------gtgtgta-----tatatatatataCAC------ACACAATT---TACaaattccagcagatttatttttggcacttgacaaaatgactctaaagtttgtttagaagagtaaaTAATAAAAAATAATAAAGTATAGACTCTTTCAATCAGATATTAAATAAAATATTGTAGACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAA-TTTAGTGTAAGGAAAAGGTGGTATTTTAACTTAATAGTGAAAAGATAGATTATTCTGTAAATGGTTTTAGGAAAACTGACAATTTGAGGAAGTTTGAGTCTTAACTCCAGTTTTTGTCAAAATAAGTTAGAGTTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAGAACATCAGTCTGAAGATATATTAAGAGTTAAGGATGAggctgggcacagtggttcacgcctttaatcccagcactttgtgaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggcaacatagcaagactctctctctCTCAAGActctctctctctctctctctatatatatatatctatatatagagatagatagatagatagatagatagatatacatataaatatacatataCAAA----ACAAAAAAAAGGTTAAGTTTTGTATGGAGAGCCATAAAGATGAGATGTAAAAATTAAAGGCTTGATGGACACATGTTTAC--ATTTCCAGCAAGGGGGTTGATGGGAAAGAATGATAGACATAGCTCCATTACTGCTACCTAGTTTTAGGGAGTTGCTTCTGAACATCTAAAGATAACAGTTTTATAATAGCAGAAATGAGTTATTTTTCAGTGTCTAAAacattacata----acatacatatatacatacttacataAACATGTTCGTAAAATT-AATGAAGTTGGGTATAAAATTGGGCCTAGTGTTTAAAAAAGTAAATATATTTACATGAAGGAGAAAACAACTCACTGCCCACTCTTACAGCCTCTGCCAGTTTACCGTAGCGTAGTTTCTTAAGAGAATAAGCTATATGTCTTCACCTTTTTTCACTGAACTCATTATAATGTGGATTCTGCCTTCATCATTGTGCTAAAATTTatctcctagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattctgatactgttgattgttcccttgttgaaacattcctccattcttaatatccgccaataaagagctggttaaataaaaattatagtgtacagttttataatagaata--------ttctgttgtagaac--aaaaaaatgcagccagtctttccataagaacatgtacaaacttctaatatatattaggttaaaaagtgaggcataaaatattgtgtataatctgacccctttag--tatacagtgtaaaaaaatctatgtctgtgcttgtttataCTTACTTTTTTCTCCCCTGGTGGATACGGGAAAC--TGAATAGTAGAACACAATT-----TAAAAAAACTGTGTGGCTTCTGTGCCAGGACCTGTGATAATTGGGTATaaaagattaaaaaaaaaaaaaaaaaGCATGTCCATGTCCTCTGGGAAGGGACATGATAATCGAATGGGACTTCTATCGGATTCTTTTCTCCTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCGTTGGCCTACTTCTTTCTTCTCTTTTCATCCTGTGTTTTCTCTGAGTAATCTTTGACTCCCATTACTTAAGTCATGACCTGTGTTCCAGGGATTCCTAAATCTGTATTCATCTCCAGAGTTTCAAGCCCATATATCTGTCTGTATATCATATATGTTAGGGAATCTCACTTGGAGTAACATGGGTGTTCAAAATGATGATATTTAAATTTTCATGTATCCGCTTCCTAGCACTCTATCAGCCCTATCATGTGTTCCATCAATAATTCTCCTTGTAACTGCGAGTGGGACAAAATGAAATAATCAAACTAGTCACCCATGCCTAAACCTGGGAACTG
i macFas5.chr7                  I 7673 C 0
s chlSab2.chr29                   3824716 2248 +  24206276 agtttgggaagctgaggtgagtagatgacaattaactgggtgtctgtggcacacacctgtagttccaactactcctgaggttgaggcaggaggatcacttgagcctgggaggcagaggttgcagtgagccgagatcatgcctctgaactccagcctacatgacagagtgagaccctgtctcaaaaaaaaaaaaaaaaAAG------------------TGTGTGtgtatatatatatatattttatattt--tatatctattcatatatatata-------------------------------gtgtgtg-----tatatataTACACAC------ACAAAATT---TacaaattccagcagatttatttttggcacttgacaaaatgactctaaagtttgtttagaagagtaAATAATAAAAAATAATAAAGTATAGACTCTTTCAATCAGATATTAAATAAAATATTGTAGACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAATTTTAGTGTAAGGAAAAGGTAGTATTTTAACTTAACAGTGAAAGGATAGATTATTCTGTAAATAGTTTTATGAGAACTGACCATCTGAGGAAGTTTGAGTCTTAACTCCAATTTTTGTCAAAATAAGTTATAGTTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAGAACATCAGTTTGAAGATATTTTAAGAGTTAAGCCTGAggctgggcacagtggttcatgcctgtaatcccagcactttgcaaggccaaggtggaaggattgcttgagtccaggagtttgagatcagcctgagcaatatagcaagactttctct-------gtctctctctctctctctctctatctatatatat----------------atatgtagacagatagatacatatccatataaatatacatatacaaat---aCAAAAAAAAGGTTAAGTTTTGTATGGAGAGCCATAAAGATGAGATGTAAAAATTAAAGGCTTGATGGACACATGTTTACAAATTTCCAGCAAGGGGGTTGATGGGAAAGAATGATAGACATAGCTCCATTACTGCTACCTAGTTTTAGGGAGTTGTTTCTGAACATCTAAAGATAACAGTTTTATAATAGCAGAAATGAGTTATTTTTCAGTGTCTAaaacattacata----acatacatatatacatacttacaTAAACATGTTCATAAAATT-AATGAAGTAGGGTATAAAATTGGGCCTAGTGTTTAAAAAAGTAAATATATTTACATGAAGGAGAAAATAACTCACTGCCCACTCTTACAGCTTCTGCCAGTTTACCATAGCGTAGTTTCTTGAGAGAATAAACTACATGTCTTCACCTTTTTTCACTGAGCTCATTATAATCTGGATTCTGCCTTCATCATTGTGCTAAAATTTatcttctagtttccaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattttgatactgttgattgttcccttgttgaaacattcctccattcttaatgtccgccaataaagagctggttaaataaaaattatagtgtacagttttataatagaata--------ttctgttgtagacc--aaaaaaatgcagccagtctttccataagaacatgtacaaacttctaagatatattaagtaaaaaagtgaggcataaaatattgtgtataatctgacccctttag--tatacagtgtaaacaaatctatgtctgtgcttgtttaTACCTACTTTTTTCTCCCCTGGTGGATACGGGAAAC--TGAATAATAGAACACAATT-----TAAAAAAACTGTGTGGTTTCTGTGCCAGGACCTGTGATAATTGGGTATAAAAGAT------------AAAAAGGCATGTCCATGTCCTCTGGGAAGGGACATGATAATCGAATGGGACTTCTATCAGATTCTTTTCTCCTATTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGTTTTCTCTGAGTAATCTCTGACTCCCATTACTTAAGTCATGACCTGTGTTCCAGGGATTCCTAAATCTGTATTCATCTCCAGAGTTTCAAGCCCATATATCTGTCTGTATATCATATATGTTAGGGAATCTCACTTGGAGTAACATGGGTGTTCAAAATGATGATATTTAAATTTTGATGTATCCACTTCCTAGCACTCTATCAGCCCTATCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGAGTGGGACAAAATGAAATAATCAAACTAGTCACCCATGCCTAAACCTGGGAACTG
i chlSab2.chr29                 C 0 I 39
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642    0 - 162156779 I

a score=20942.000000
s hg38.chr15_KI270850v1_alt         89153 32 +    430880 TCTTAATATTCTTTTATATACACCTGT--TCTGA
s panTro4.chr15_GL392289_random    175697 32 -    187897 TCTTAATATTCTTTTATATACACCTGT--TCTGA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17618335 34 -  99152023 TCTTAACGTTCTTTTATATGCTGCTGTTCTCTGA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102130681 34 + 121039945 TCTTAGCGTTCTTTTATATGCTACTGTTCTCTGA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65259041 34 + 171882078 TCCTAGCATTCTTTTATATACTACTGCTCTCTGA
i macFas5.chr7                  C 0 I 7
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3826964 39 +  24206276 I
e papAnu2.chr7                  102469642  0 - 162156779 I

a score=196418.000000
s hg38.chr15_KI270850v1_alt         89185 173 +    430880 CCTCCCCCCCAAACTAGTAAATTTCTAAGACCTGTCCTTCTGAATGTCTCTTACAATTTTCCCTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAATGCTTtgtgtgtgtgtgtgtgtgtggtgGGGGAAGAGAGTAAAATTGAAATTTGTGGAAAACGTACTAGCCTGTCTG
s panTro4.chr15_GL392289_random    175729 165 -    187897 C--CCCCCCCAAACTAGTAAATTTCTGAGACCTGTCCTTCTGAATGTCTCTTACAATTTTCCCTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAATGCGT------TGTGTGTGTGTGTGGTGGGGGAAGAGAGTTACATTGAAATTTGTGGAAAACGTACTAGCCTGTCtt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17618369 164 -  99152023 ---TCCCCCCAAACTAGTAAATTTCTAAGACCTGTCCTTCTGAATGTCTCTAACTATTTTCCTTGTGATCTCAGTTTCTTCTTCCCATCCCTCAAATGCTT------TTTGTGTGTGTGTGGTGGGGGAAGAGAGTAAAATTGAAATTCGTGGAAAATGTACTGCCctttctt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102130715 165 + 121039945 C--CCCCCCCAAACTAGTAAATTTCTAAGACCTGTCCTTCTGAATGTCTCTTATTATTTTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAGATGCTT------TTTGTGTGTGTGTGGTGGGGGAAGGGAGTAAAATTGAAATTCGCGGATAATGTACTACCCTGtctt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65259082 166 + 171882078 CCTCCCCCCGAAACTAGTAAATTTCTAAGACCTGTCCTTCTGAATGTCTCTTACTATTTTCCCTGTGATCTCACTTTCTTCCTCCCATCCCTCAAATGC-T------TTTGTGTTTGTGTGGTGGGGGAAGAGAGTAAAATTGAAATTCATGGAAAATGTACTACCCTGTCTG
i macFas5.chr7                  I 7 I 120
s chlSab2.chr29                   3827003 167 +  24206276 CCTCTCCCCGAAACTAGTAAATTTCTAAGACCTGTCCTTCTGAATGTCTCTTACTATTTTCCCTGTGATCTCAGTTTCTTCCTGCCATCCCTCAAATGCTT------TTTGTGTTTGTGTGGTGGGGGAAGAGAGAAAAATTGAAATTCATGGAAAATGTACTACCCTGTCtg
i chlSab2.chr29                 I 39 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=3620.000000
s hg38.chr15_KI270850v1_alt         89358 3 +    430880 TCT
s panTro4.chr15_GL392289_random    175894 3 -    187897 tct
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17618533 3 -  99152023 cct
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102130880 3 + 121039945 tct
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65259368 3 + 171882078 tct
i macFas5.chr7                  I 120 C 0
s chlSab2.chr29                   3827170 3 +  24206276 tct
i chlSab2.chr29                 C 0 I 123
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=5242.000000
s hg38.chr15_KI270850v1_alt         89361 7 +    430880 GTCtttc
s panTro4.chr15_GL392289_random    175897 7 -    187897 ttctttc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17618536 7 -  99152023 ttctttc
i ponAbe2.chr15                 C 0 I 42
s nomLeu3.chr6                  102130883 7 + 121039945 tcctttc
i nomLeu3.chr6                  C 0 I 431
s macFas5.chr7                   65259371 7 + 171882078 ttctttc
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3827173 123 +  24206276 I
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=312.000000
s hg38.chr15_KI270850v1_alt         89368 4 +    430880 gagg
s panTro4.chr15_GL392289_random    175904 4 -    187897 gagg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17618585 4 -  99152023 tcAa
i ponAbe2.chr15                 I 42 C 0
s nomLeu3.chr6                  102131321 4 + 121039945 gaga
i nomLeu3.chr6                  I 431 C 0
s macFas5.chr7                   65259378 2 + 171882078 --ga
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e chlSab2.chr29                   3827173 123 +  24206276 I
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=267907.000000
s hg38.chr15_KI270850v1_alt         89372 229 +    430880 tgaagtctccctcttgtccccctggctggagtgcaatggcacaatcttggcttactgcaacttccatctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtgtttttagtagagatggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcc
s panTro4.chr15_GL392289_random    175908 229 -    187897 tgaagtctccctcttgtccccctggctggagtgcaatggcacaatcttggctcactgcaacctccatctcctgggttcaagcagttctcctgcgtcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtgtttttagtagagacggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  17618589 229 -  99152023 tgaagtcttgctcttgtcgcccaggctggagtacaatggcacaatctcagctcactgcaacctccacctcctgggttcaagtgattctcttgcctcaatctcctgagtagctgggattacaggcacctgccaccatacccagctaatttttgtatttttagtagagatgaggtttcatcatgttggccaggtaggtctcaaactcctgacctcaggtgatccacccgcc
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102131325 226 + 121039945 cggagtttcgctcttgttgcccaggctggagtacaatggcgcaatctcagctcaccgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatctgccaccatgcccagctaatttttgtatttttagtagagatgaggtt---tcatgttggccaggctggtctcaaactcctaacctcaggtgatccgcccacc
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65259380 228 + 171882078 tgaactctcactcttgtcccccaggctgcagtgcaatggtgcaattttgccttactgcaacctccacctcccaggttcaagcaattctcctggctcagcctcctgagtagctgggattacaggcacctgtcaccatgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctc-agctcctgacctcagatgatgtgcctgcc
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3827296 228 +  24206276 tgaactctcactcttgtcccccaggctgcagtgcaatgatacaattttgccttactgcaacctccacctcccaggttcaagcaattctccgggctcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctc-agctcctgacctcagatgatgtgcctgcc
i chlSab2.chr29                 I 123 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=195528.000000
s hg38.chr15_KI270850v1_alt         89601 219 +    430880 ttggcctcccaaattgctgggattacaggtgtgagccaccatgcctggccACTACCCTG----TCTTGTTGCTTGGTATGACTCCACTACCCTGCTGCCTCTCTCCCCGTACAGCAGCataatttaggaatcagagagac--------tgaggaggatata---tattatttaggtgcaccggcccagtcagattaacatctaaaggactgagccctgaacaaagagtcaggtt
s ponAbe2.chr15                  17618818 234 -  99152023 tcggcctcccaaattgctgggattacaggtgtgagccaccatgcctggccACTACCCTGTCTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCTCCCTCTCTCCCCCTGCAGTgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatttaggtgcactggcccagtcaaattaacatctaaaggactgagccctgaacaaagagtcaggtt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102131551 234 + 121039945 tcggcctcccaaattgctgggattacaggtgtgagccaccgtgcctggccACTACCCTGTCTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCTGCCTGTCTTCCCCTGCAATgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatttaggagcaccggcccagtcaaattaacatctaaaggactgagccctgaacaaagagtcaggtt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65259608 234 + 171882078 tcggcctcccaaattgctgggattacaggtgtgagtcaccgtgcccagccACTACCCTGTCTTTCTTGTTGCTTGGTATGACTCTACTACCCTGCTGCCTCTCTCCCCCTGCAGCgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatttaggtgccctggcccagtcagattaacatctaaaggactgagccctgaacaaagagtcaggtt
i macFas5.chr7                  C 0 I 94363
s chlSab2.chr29                   3827524 234 +  24206276 tcggcctcccaaattgctgggattacaggtgtgagtcaccgtgtccagccACTACCCTGTCTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCTGCCTCTCTCCCCCTGCAgcgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatttaggtcccctggcccagtcagattaacatctaaaggactgagccctgaacaaagagtcaggtt
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113951365 89514 - 132174527 T
e papAnu2.chr7                  102469642   0 - 162156779 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=10566.000000
s hg38.chr15_KI270850v1_alt         89820 19 +    430880 accttttaagcattttgtg
s ponAbe2.chr15                  17619052 19 -  99152023 accttttaagcattttgtg
i ponAbe2.chr15                 C 0 n 0
s nomLeu3.chr6                  102131785 19 + 121039945 accttttaagcattttgtg
i nomLeu3.chr6                  C 0 I 45709
s chlSab2.chr29                   3827758 19 +  24206276 accttttaagcattttgtg
i chlSab2.chr29                 C 0 n 0
s calJac3.chr10                 113861851 13 - 132174527 ACCTTTAGAACAG------
i calJac3.chr10                 T 89514 C 0
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=289.000000
s hg38.chr15_KI270850v1_alt         89839 7 +    430880 TCGGTCA
s calJac3.chr10                 113861864 7 - 132174527 CTAGTCA
i calJac3.chr10                 C 0 C 0
e chlSab2.chr29                   3827777 0 +  24206276 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e nomLeu3.chr6                  102131804 45709 + 121039945 I
e ponAbe2.chr15                  17619071 0 -  99152023 I
e panTro4.chr15_GL392289_random    176137 0 -    187897 C

a score=73219.000000
s hg38.chr15_KI270850v1_alt         89846 353 +    430880 Ttatgccgacaaggtgtccgcactaagttcagtatcagtatggtgacctcctgggaacaggt---catcggcttgcctaaggatgggagaactggcccaggtcagaaagggagcaggtcagaattcctgcaccaatcggtagtgggactgtgcctgggcaatatagcaagatcttggttcttaaaattcaaaataaagaaCAGC---TCATTCCCCTCTGGGGAGGGGCTGGCTCAAGGTTACACAGTGAGTGTGGGGGCAGAGGCGGGCCCAC---TGTACCTCCCTTGTTGGGTTGTCTGAGGACCCCTCTGGCCACC-CCCCACAGGAGATGGAGGAGGACATCTGGACAGTGAGCAGGA
s chlSab2.chr26                  50403183 358 -  58131712 ttatgccaaccgggtgtctgtactaagttcggcatcaatatgatgacctcccaggagcaggcggccaccaggttgcctaaggatgagtgaactggcccagatcagaaagggagcaggtcagaactcctgcaccaactggtagtgtgactgtgcctgGGCAATATAG-AAGATCTTGGATCTTATAGG-AAAACTAAAGAACAGCAGGTCATTCCCCTCTGGGGAGGGGCTGGCTCAGGGTTACACAGTGAGGGTGGGGACAGAGGTGGGCCCAC---GGTACTTCCCTTGTTGGGTTTTCTGAGGACCCCTCTGGCCACCTCCCCACAGGAGATGGAGGAGGACATCTGGACACTGAGGAGGA
i chlSab2.chr26                 n 0 I 3
s calJac3.chr10                 113861871 360 - 132174527 Ttatgatgaccaggtgtccacactaagttcggcatcagtatggtgacctcctggaagtgggg-gccaccaggttgcctaaggaagggtgaactggcccagatcagaaagggagcagttcagaactcccacactgattggtagtgggactgtgcctgGACAGTATAGCAAGAACTTGGTTCTTAAAAG-TAAAAAAAACAACAGTAGTTCATTCCTCTGTAGGGAGGGGCTGGCTCAGGGTTACACAGTGAAGGTAGAGGCAGAGGTGGGCCCACAGTAGTACCTCCCTTGTTGGATTGTGTGCAGACCCCTCTGGCCACA-CCCCACAGGAGATGGAGGAGGACATATGGACAGTGAGGAGGA
i calJac3.chr10                 C 0 C 0
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e nomLeu3.chr6                  102131804 45709 + 121039945 I
e ponAbe2.chr15                  17619071   0 -  99152023 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=75761.000000
s hg38.chr15_KI270850v1_alt         90199 180 +    430880 ---GGCGCTTCGGCCCATGCCGAACATCCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGAGCCTGACTTTCCCTGCCCCTACTTTGCCACCTTCCTCTGTGGTCCCTCCGAAACCCCCTTATGTTCTTGGTTTCCCCGCCTTCTGACTTCTGTGGACTTTCTCTGCTTCTGGGAGCCAGTG
s ponAbe2.chr15_random            9373296 179 +  10928107 ---GGCGCCTTGGCCCATGCCGAACATCCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGAGCCTGACTTTCCCTGCACCTACTTTGCCACCTTCCTCTGTGGTCCCTCTGAAACCCCCTTATGTTCTTGGTTTCCC-ACCTTCTGATTTCTGTGGACTTTCACTCCTTCCAGGAGCCAGTG
i ponAbe2.chr15_random          n 0 C 0
s chlSab2.chr26                  50403544 180 -  58131712 ---GGTGCCTCGGCCTATGCCTAGTGTCCCAGGGGACCTGGAGAGCCAGGAGGCCATGGTGAGTCTGACTTTCCCTGTGCCCGCTTTGCCACCTTCCTCTGTGGTCCCTCCAAGACCCCGTTATGCTCTTGCTTTCCCCGCCTTCTGATTTCTCTGGACCTTCACCCCTTCCGGGAGCCAGTG
i chlSab2.chr26                 I 3 C 0
s calJac3.chr10                 113862231 177 - 132174527 GGAGGTGCCTCGGCCC------AGCATTGCAGAGATCCTGGAGAGCCGAGAGGCCATGGTGAGCCTGACTCCCCCCGCTCCTCCTTTGCCACCTTCCTCTGTGGTCCCTCCCAGGTCCCCTTATGCTCTCGGTTTCTTCACCTTCTGATTTCTCTGGACACTAACCTCTTCCAGGAGCCAGTG
i calJac3.chr10                 C 0 C 0
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e nomLeu3.chr6                  102131804 45709 + 121039945 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=327964.000000
s hg38.chr15_KI270850v1_alt         90379 487 +    430880 GTCAGACACCATTTCACCTGTGACCAACAGGTGCACTCTGTGAGGCCCGAAATGAAGGGGCTATGCTCCATCTGCCTGCCCCAGTTGTTATGTGTATACCCCTACAAGAATACTCACCTCTTGTCTTCAGGTGGCATTTTTCAACTCCGCTGGAGCCAATGCCCAGGAGGAACA------------------------------AAGGGTGTGCTGCCAGCCCCTGGCTCACCCAGTGGCCTCGTCCCAGAAAAAGCCAGAGGTAGCGGCCCCAGCCC------CAGAGAGTGGGGGTGAGTCTGTGTTTGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGCAGGTGAGTAGGTCCTGGCATGGGCCAACAAGGGGGGCGGGGGGGCAGGACAAGGCAGGTGACTCCTGACATGTGACCCCATTATTTTGGCTCCACAGCGACTTTATG--------GAAGGAGAAGGTGGACCTGAAGGAGCGGGTAGAGAAACTAGAGCTTCAATTCATCCACCTCTC
s ponAbe2.chr15_random            9373475 482 +  10928107 GTCAGACACCATTTCACCTGTGACCAACAGGTGCACTCTGTGAGGCCCCAAAGGAAGGGGCTGTGCTCCACCTCCCTGCCCCGGTTGTTCTGTATATGCCTTTACAAGAATACTCACTTCTTGCCTTCAGGTGGCATTTTTCAACTCTGCTGGAGCCAGTGCTCTGGAGGAGCA------------------------------AAGGGTGTGCTGCCAGCGCCTGGCTCACCCAGTGGCCTCGTCCCAGAAAAAGCCAGAGGCAGCGGCCCCAGCCC------CAGAAACTGGGGGTGAATCTGTGTGTGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGCAGGTGAGTAGGTCCTCATATGGGCCAACAAGGGTGG-----GGGCAGGACAAGCCAGGTGACTCCTGACATGTGACCCCATTATTTTGGCTCCACAGTGACTTTATG--------GAAGGACAAGGTGGACCTGAAGGAGTGGGTAGAGAAACCAGAGCTTCCATTCATCCACCTCTT
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54027530 518 + 170124641 GTCAGACACCACTTCACCTGTGACCAACAGGTGCACTCTCTGAGACCCC-AGGGAAGGGACTGTGCTCCACCTCCCTGCCCCATTTGTTCTGTGTATGCCCCTACAAGGATACTCACCTCTTGCCTTCAAGTGGCATTTTTCAACTCCGCTGGAGCCAGTGCCCAGGAGGAGCAGGCACGGCTATGTGGGCAGCGGAAGGTGTGAAGGCTGTGCTGCCTGCACCTGGCTCACCTGGTGGCCTCGGCCTGGAAGGAGCCAGAGG-AGAGGCCCCAGCCC------CAGGGACTGGGGGTGAGTTTGTGTGTGGGGAGACCTACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGAAGGTGAGCGAGTCCTGGCATGGGCCAAGAAAAGTGG-----GGGTGGGGCAGGACAGGTCACTCCTGTGATGTGACCCTATTATTTTGGCTCCAGAGTGGCTTTATGGACCTCCCGAGGGAGAAGGTGGACGGGAAGCAGCAGGTGGAGAATCTAGAGCTTGGATTCATCCAGCTCTC
i rheMac3.chr7                  N 0 C 0
s chlSab2.chr26                  50403724 520 -  58131712 GTCAGACACCACTTCACCTGTGACCCACAGGTGCACTCTCTGAGGCCCCAAGGGAAGGGACTGTGCTCCACCTCCCAGCCCCATTTGTTCTGTGTATGCCCCTACAAGAATACTCAGCTCTTGCCTTCAAGTGGCATTTTTCAACTCCGCTGGAGCCAGTTTCCAGGAGGAGCAGGCACAGCTATGTGGGCAGCGGAAGGTGTGAAGGCTGTGCTGCCTGCACCTGGCTCACCTGGTGGCCTCGGCCTGGAAGGAGCCAGAGGCAGAGGCCCCGGCCC------CAGGGACTGGGGGTGAGTTTGTGTGTGGGGAGAGCTACCGGGCCCTGTAGGAGGCCATGGAGAAGGTGAAGGTGAGTGAGTCCTGGCATGGGCCAAGAAAAGTGG-----GGGTGGGGCAGGACAGGTCACTCCCATGATGTGACCCTATTATTTTGGTTCCAGAGTGGCTTTATCGCCCTCCCGAGGGAGAAGGTGGACGGGAAGCAGCAGGTGGAGAAACTAGAGCTTGGATTCATCCATCTCTC
i chlSab2.chr26                 C 0 I 1556
s calJac3.chr10                 113862408 507 - 132174527 CTCAGACACCATTTCACCTGTGACTGACA-GTGCATTCTCTGAGGCCCCAAGGGAAGGGGCTGCACTCCACCTCCATG-CCCATTTGCTCTGTGTATGCCGCAACAAGAATGTTCACCT-----CTTCAGGTTGCATTTTCCAACTCGGCTGGGGCCAGTGCCCAGGAGGAGCAGGAACAACTGTGTGTGCAGCCTCAGGAACGAAAGGTATGCTACCAGCACCTGGCTCACCCAGTGGCCTTGGT---GCAGGAGCCAGAGGCAGTGGCCCCGGCCCCAGCCTCAGGGACTGAGAGTGAGTCTTTGTGTGGGGAGACCAATCAGGCACTGCAGGGAGCCATAGAGAAGCCGCAGGTGA----GTCCTGGCATAGGCCAAGAAGGGTGG----------GGGCAGGGCAGGTCACTGCTGAGATGTGACCCCATTATTTTTACTTCAGAACAGCTTTATGACCCTCCGAAAGGAGAAGGTGGACCTGAAGGAGCGGGTGGAGAAACTAGAGCTTCTATTCATCAGGCTCTC
i calJac3.chr10                 C 0 C 0
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e nomLeu3.chr6                  102131804 45709 + 121039945 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=64982.000000
s hg38.chr15_KI270850v1_alt         90866 217 +    430880 AGGACAGACAGACACCAT-AGGGAGTGAGAGGCTAGGGCACCGCTGGGGGGAGCTGCCAGGCCGTCTGAGGGGCCCCAGC----------ATCTGAGCCATGTCCTCCTGCAGGAAAGTACATC------------AGCCAGGGGGCAGTGTCAGAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGCTGGCCCAGGACCAGGAGGAGATGAAGGT--AGGGTGTGCAACATCTCGGTGG
s ponAbe2.chr15_random            9373957 216 +  10928107 GGGACAGACAGACACCAT-AGTGAGCGAGAGGCCAGGGCATGGCTGGGGG-AGCTGCAGGGCTGTCCGAGGGGCGCCAGC----------ATCTGAGCCGTGTCCTCCTGCAGGAAAGTACATC------------AGCCAGGGGGCAGTGCCAAAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGTTGGCCCAGGACCAGGAGGAGATGAAGGT--AGGGTGTACAACATCTCTGTGG
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54028048 230 + 170124641 TGGAGCGACAGATGGCATGAGTAAGCAGGAGGCCAGGGCACGGGCACGGGGAGCTGCAGGGCCTTCAGAGGGGCCCCAGT----------GTGTGAGCCGTGTCCTCTCACAGGAGAGCACATCACAGTATATGAGAGCCAGAGGGCAGAGCCAAACACGCGGCACCAG--GAGGAGGAAGCCAGCAGGCTGGCCCAGAACGAGGAGGAGATGAAGGTAGAGAGTGTGCAACATCTCTGCGG
i rheMac3.chr7                  C 0 I 48
s calJac3.chr10                 113862915 219 - 132174527 TGAAGAGACAGACACAATGAGTGAGCAGGAGGCCAGGGCATGGCAGGGGG-AGCTGCAGGGTGGTCAGAGGGTCCCCAGCGTTTGAGCCTGTGTGAGCCCTGTCCTTTCGCAGGAAAGGACATCAAATCATGTGAGCAGCAGAGGGCAGTCCCAAAAACCCGGCACCAGGAGAAGGG--------------------GGAAAAGCAGGAGATAAATGT--AAGGCGAGCAGCATCTCTATGG
i calJac3.chr10                 C 0 C 0
e chlSab2.chr26                  50404244 1556 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e nomLeu3.chr6                  102131804 45709 + 121039945 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=7756.000000
s hg38.chr15_KI270850v1_alt         91083 51 +    430880 -----GGGAGGGTGGGGGTGGGTGTGAACGTGCGTGCTGGCACCGGCATGGCAGCT
s ponAbe2.chr15_random            9374173 41 +  10928107 -----GGG----------TGGGGGTGAACGTGGGCGCCGGCACCGGCATGGCAGCT
i ponAbe2.chr15_random          C 0 C 0
s calJac3.chr10                 113863134 56 - 132174527 GGGTGAGGGGGTTGGGAGTGGGCATGAGCATGGGTGCCGGCACCAGCGTGGCAGCT
i calJac3.chr10                 C 0 I 1
e chlSab2.chr26                  50404244 1556 -  58131712 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e rheMac3.chr7                   54028278 48 + 170124641 I
e nomLeu3.chr6                  102131804 45709 + 121039945 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=29558.000000
s hg38.chr15_KI270850v1_alt         91134 118 +    430880 AACACCCCTTCCTCCAGGTGAACCTGCAGGAGCTGC----------------------------------------------GGGGCA-GGTGTTGCAGCTTGTGGGAGACCACAAGGAGGGGCATGGCAAATT-CTGACC-ATTGCCCAGAACCCTGCTGATGAGC
s ponAbe2.chr15_random            9374214 164 +  10928107 AACACCCCTTCCTCCAGGTGAACCTGCTGGAGCTGCAGGGGCAGGTGTACCCCTTCCTCCAGGTGAACCTGCTGGAGCTGCAGGGGCA-GGTGTTGCAGCTTGTGGGCGACCACAAGGAGAGGCATGGCAAATT-CTGACC-ATTGCCCAGAACCCTGCTGATGAGC
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54028326 117 + 170124641 AGCACCCCTCCCTTCAGGTGAAGCTGCTGGAGCTGC----------------------------------------------AAGATATGGTGTTGCCGGTTGTGGGCGACCAC---GAGGGGCATGACAAATT-CCTCCCTGCTGCCCAGAACCCTGTTAATGAGC
i rheMac3.chr7                  I 48 C 0
s calJac3.chr10                 113863191 108 - 132174527 AGCACCTCTCTCTCCAGCTGGAGCTGCAGAAGCC-------------------------------------------------------AGTGTTTCCAATTCTGGGTGACAAC---GAGGGCCATGCCAAATTCCTGGCC-ACAGCCAATTACCACATTGATGAGC
i calJac3.chr10                 I 1 C 0
e chlSab2.chr26                  50404244 1556 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e nomLeu3.chr6                  102131804 45709 + 121039945 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=191149.000000
s hg38.chr15_KI270850v1_alt         91252 317 +    430880 CCACTCTAGGAGCCCCAATAGCCCAGGAGCTTGGGTG-TGCTGACGAGCAGGGTGGTGAGTAGAGCCCTCAGGCGGGGTGGGCAGGCAGGAGCAGGGGAGGCTCACACTGTGCTCAGATTCCCACCCCCCCTCCCTCTCTCTGAAGATCTTTGTGAGGTGAGCCTCACTGATAGCGTGGAGGCTGCACCAGGAGAGGACAGGGAGGGTTCTCCCCACGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTCCTGTAATGCAGGACTCCCCAGGAGCACCCAGGCATGG--------------------------------------GCAGCAACCCCTGCATGCCATTCTTTT
s ponAbe2.chr15_random            9374378 316 +  10928107 CCACTCTAGGAGCCCCAGTAGCCCAGGAGCTTGGGTG-TGCAGACAAGCAGGGTGGTGAGTAGAGCCCTCAGCCGGGATGGGCAGGCAGGAGCAGGGGAGGCTCGCACTGTGCTCAGATTCCCACCCCCC-TCCCTCTCTCTGAAGATCTTTGTGAGGTGAGCCTCACTGATAGCGTGGAGGCTGCACCAGGAGAGGAGAAGGAGGGTTCTCCCCATGACAACCCCACTGCGCAGCAGATCCAGCAGGTGTTTCCTGTAATGCAGGACTCCCCAGGAGCACCCAGGCTTGG--------------------------------------GCAGCAACCCCCACATGCCATTCTTTT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102177513 355 + 121039945 CTGCTCTAGGAGCCCCAATCCCACAGGAGCTGGGGTGTTGCTGACAAGCAGGGTGGTGGGTTGAGCCCTCAGGTGGGGTGGGCAGTCAGGAGCAGGGGAGGCTCCCACTGTGCTCAGATTCCCACCCCCC-TCCCTCTCTCTGAAGATCTTTATGAGGTGAGCCTCACTGATAGCGTGGAGCCTGCACCAGGAGAGGACAGGGGGGGTTCTCCCCATGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTTCTGTAATGCAGGACTCCCCAGGAGCACCCAGGCTTGGCTGGAGAAGCTGTTGGTACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGCATGCCATTCTTTT
i nomLeu3.chr6                  I 45709 C 0
s rheMac3.chr7                   54028443 278 + 170124641 CCGCTTCAGGGGCCCCAGCCCCCCAGG-------------------AGCAGGGTGGTGAGTAGAGCCCTCAGGTGGGGTGGGCAGGCTGGAGCAGGGGAGGCTCACAGTGTACTCAGAGCCCCGCC-----TCCCTCTCTCCGAAGATTT--------------TCACC-ACAGCATGAAGCCTGCAGTGGGACAGGCCAGGGAGGGTTCTCCCCGTGACAACCCCACTGCACTGAAGATCCTGCAGCTGCTTCCTGTAACGCAGGAC-ACCCAGGAGCACCCAGGCTTGG--------------------------------------CCACCAAACCCTGCATGCCATTCTTTT
i rheMac3.chr7                  C 0 I 3315
s calJac3.chr10                 113863299 308 - 132174527 CCACTCCAGGGGCCCCAGCCCCCCAGGAGCTTGGGAC-TGTCAATAAGCAGGGTGGTGAGTGGAGCCCTCAGGCAGAGTGGGCAGGCAGGAGCAGGGGAGACTCACCCTGAGCTGAGATCCCCACC-----TCCCTCTCTCCAAAGATCTTTGTGAGGTGAGCCTCGCAGATGGCATGGAGCCTGCA---AGAGACGCCAGGGAGGGTTCTCCCCAGGACAACCCCACTGTAGGAAACATCCTGCAGCCGCTTTGTGAAATG-AAGACCTTCCAGAAGCACCCAGGCTTGG--------------------------------------GCTGCAACCCCTATGTGCCATTGTTTT
i calJac3.chr10                 C 0 I 2
e chlSab2.chr26                  50404244 1556 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=14072.000000
s hg38.chr15_KI270850v1_alt         91569 32 +    430880 TGGGCTCCCAAGAACAGGGAGATAAACACCAC
s ponAbe2.chr15_random            9374694 32 +  10928107 TGGGCTGCCAAGAAAAGGGAGATAAACACCAC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102177868 32 + 121039945 CGGGCTGCCGAGAACAGGGAGATAAACATCAC
i nomLeu3.chr6                  C 0 C 0
s calJac3.chr10                 113863609 32 - 132174527 CGGGCTGCCAAGAACAGGGAGAACAGCATCAC
i calJac3.chr10                 I 2 I 648
e chlSab2.chr26                  50404244 1556 -  58131712 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e rheMac3.chr7                   54028721 3315 + 170124641 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=1855.000000
s hg38.chr15_KI270850v1_alt         91601 8 +    430880 CATCATCT
s ponAbe2.chr15_random            9374726 8 +  10928107 CATCATCT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102177900 8 + 121039945 CATCATCG
i nomLeu3.chr6                  C 0 C 0
e calJac3.chr10                 113863641 648 - 132174527 I
e chlSab2.chr26                  50404244 1556 -  58131712 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e rheMac3.chr7                   54028721 3315 + 170124641 I
e panTro4.chr15_GL392289_random    176137 0 -    187897 C

a score=5983.000000
s hg38.chr15_KI270850v1_alt         91609 9 +    430880 GAGAGCCGG
s ponAbe2.chr15_random            9374734 9 +  10928107 AAGAGCCGG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102177908 9 + 121039945 AAGAGCTGG
i nomLeu3.chr6                  C 0 N 0
s rheMac3.chr7                   54032036 9 + 170124641 GAGGGCCAG
i rheMac3.chr7                  I 3315 C 0
s chlSab2.chr26                  50405800 9 -  58131712 GAGGGCTGG
i chlSab2.chr26                 I 1556 C 0
e calJac3.chr10                 113863641 648 - 132174527 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e panTro4.chr15_GL392289_random    176137 0 -    187897 C

a score=318077.000000
s hg38.chr15_KI270850v1_alt         91618 715 +    430880 GAAGGGGAAGGCGTAGGTGTGGGCGTGGC-AAGGTTCCTGGAAAAGAGGGGCTGGAAGGGAAAGGGGAGGAAGATGGAGGGAGAAGCTAGAGCTTCATAGGTAGTGCCTGGGGGCTGTGGCGG-TCCTCCCCACCCCACACACACTGGCCTCTCTCATGGCACCCAGGCAGTCCACCCA--------CAGTTCAGACCAATGCTCAACTCCCCCGG-CTTCCCTCTTCTGTGGTCACCCCATCTTCCAACCCACTGGCCCAGGGCCACCTCTTGCTTGGGGAGCCCCACCCAACAGCCACCAAGCCTGACAGAAGGAACACTGCTTGAACCAAAATGGTGAAGCTGTAAGGGATGGCTGGCTGGAGTGAGCGCCAGAGGCCCCTCTCTGGGCAGTCAGAAAGCCCAGGGTCCACTGAAGGGACCCTGGGGAAGGCAGGGAGGGCAGGTAGCTAGATGCCACTGCCCATAGACTTATAAGTC-TAAGAGGGGAACCTCAACTGGTTGGCGGGGG-----GCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTCCTGCTGGGAAAAGCAGAAGAGGGAGACTCCGCGGCAGGAAAGGCAGGTGGGCTCGCTAGGCGGAGCTCAGCTGGGCCAGCAAGCACTGTGGTCTCCTTGGCTGAATAGCACAGGTGACCCCTAGGAGCAACAGGCCAAGGTCCGTGAGCCTGCTGGCTGGCAGTAGTGCTTCAGTAGTGCT
s ponAbe2.chr15_random            9374743 713 +  10928107 GGAGGGGAAGGCTTAGGTGTGGGCGTGGC-AAGGTTCCTGGTAAAG--GGGCTGGAAGGGAAAGGGGAGGAAGATGGAGGGAGAAGCCAGAGCTTCATAGATAGTGCCTGGGGGCTGCGGCGG-CCCTCCCCACCCCACACACGCTGGCCTCTCTCATGGCACCCAGGCAATCCACCCATCCACCCACAGTTCAGACCAATGC-CAGCCCCCTCGGGCTTCCCTCTTCTCTGGTCACCCCGTCTTCCAACCCACTGGCCCAGGGCCACCTCTTGCTTGGGGAGCCCCACCCAACAGCCACCAAGCCTGACAGAAGGAACAGTGCTTGAACCAAAATGGTGAAGCTATAAGGGATGGCTGGCTGGAGAGAGCACCAGAGGCCCCTCT--GGGCCGTCA--AAGCTCAGGGTCCACTGAAGGGACCCTGGAGAAGGCAGGGAGGGCAGGTAGCTGGGTGCCACTGGCCATC------TAAGTC-TAAGAGGGGAGCCTCAGCTGGTTGGTGGGGGTGGG-GCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTCCTGCTGGGAAAAGCAGAAGAGGGAGACTCCGTGGCAGGAAAGGCAGGTGGGCTCGCTAGGCGGAGCTCAGCTGAGCCAGCAGGCACTGTGGTCCCCTTGGCTGAATAGCAGAGGCGACCCCTAGGAACAACAGGCCAAGGTGTGTGAGCCTGCTGGCTGGCGATAGTGCTTCAGCAGGG--
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54032045 695 + 170124641 GGAGGGGAGGGTGCAGGTGTGGGTGTGCCAAAGGTTCCTGGAAAAGAGGGGCCAGAAGGGAAAGGGGAGGAAGATGGAGGGAGGAGCCAGAGCTTCACAGGTAGTGCCTGGGGGCTGTGGCAG-CCCTCCCCA---------------------CCATGGCACACAGGCAGTGCACCCA--------CAGTTCAGACCAATGCTCAGCCCCCTTGGGCTTCTGTCTTCTCTGGTCACCCTGTCTTCTAACCCACTGG-CCAGGGCCACCTCTTGCTTGGGGACCCCCACCCAACTGCCACCTGGCCTGAT--AAGGAACACTGCTTGAACCAAAATGGTGAAGCTATAAGGGATGGATGGCTGGAGTGAGTGCCAGAGGCCCCTCT--GAGTGGTCAGAAAGACCAGGGTCCTCTGAAGGGAGCCTGGGGAAGGCAGGGAGGGCAGGTAGCTGGATGCCACTGGCCATAGACTTATAAGTCTTAAGAGGGGAGCCCCAGCTGGTTGCTGGGTGGGAATGCTACAGGTTTCGTAGATGAGGCTGGGCCCTTCCTGCTGAGAAAAGCAGAAGAGGGAGAGTCCATGGCAGGAGAGGCAGGTGTGTTCACTAGGCGGAGGTCAGCTGGGCCAGCAGGCACTGTGATCCCCTTGGCTGAATAGCACAGGAGACCCCTAGAAGCAACAGGCCAAGTTGTGTGAGCCTGCTGGCCTGTGGTAATGCTTCAGCGGGG--
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50405809 715 -  58131712 GGAGGGGAGGGCGCAGGTGCGGGTGTGGCAAAGGTTCCTGGAAA--AGGGGCTGGAAGGGAAAGGGGAGGAAGATGGAGGGAGGAGCCGGAGCTTCACAGGTAGTGCCTGTGGACTGCGGTGGCCCCTCCCCAGCCCACACACGCTGGCCTCACCCATGGCACCCAGGCAGTGCACCCA--------CAGTTCAGACCAATGCTCAGCCCCCTTGGGCTTCTCTCTTCTCTGGTCACCCTGTCTTCCAACCCACTGG-CCAGGGCTACCTCTTGCTTGGGGAGCCCCACCCAACTGCCACCTGGCCTGAT--AAGGAACACTGCTTGAACCAAAATGGTGAAGCTATAAGGGATGGATGGCTGGAGTGTGTGCCAGAGGCCCCTCT--GGGTGGTCAGAAAGACCAGGGTCCTCTGAAGGGAGCCTGGGGAAGGCAGGGAGGGCAGGTAGCTGGATGCCACTGGCCATAGACTTGTAAGTCTTAAGAGGGGAGCCTCAGCTGGTTGCCAGGTGGGAATGCTACAAGTTTCGTAGGTGAGGCTGGGCCCTTCCTGCTGGGAAAAGCAGAAGAGGGAGAGTCCATGGCAGGAGAGGCAGGTGGGCTCGCTAGGCGGAGGTCAGCTGGGCCAGCAGGCACTGTGGTCCCCTTGGCTGAATAGCACAGGAGACCCCTAGAAGCAACAGGCCAAGTTGTGTGAGCCCGCTGGCCTGTGGTAATGCTTCAGCGGGG--
i chlSab2.chr26                 C 0 C 0
e calJac3.chr10                 113863641 648 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=22073.000000
s hg38.chr15_KI270850v1_alt         92333 31 +    430880 GGCCAGGGACCCAGCCTTCAGTCACATGCTA
s ponAbe2.chr15_random            9375456 30 +  10928107 -GCCAGGGACCCAGCCTTCAGTCACACGCTA
i ponAbe2.chr15_random          C 0 I 15
s rheMac3.chr7                   54032740 30 + 170124641 -GCCAGGGACCCTGCCTTCGGTCACACACTA
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50406524 30 -  58131712 -GCCAGGGACCCTGCCTTTGGTCACATGCTA
i chlSab2.chr26                 C 0 C 0
s calJac3.chr10                 113864289 30 - 132174527 GGCCAGGGA-CCTGCCTTCAGTCACAGACTA
i calJac3.chr10                 I 648 C 0
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=3672.000000
s hg38.chr15_KI270850v1_alt         92364 7 +    430880 GCAGCTG
s rheMac3.chr7                   54032770 7 + 170124641 GCAGCTA
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50406554 7 -  58131712 GCAGCTA
i chlSab2.chr26                 C 0 C 0
s calJac3.chr10                 113864319 7 - 132174527 GCAGCTA
i calJac3.chr10                 C 0 C 0
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e ponAbe2.chr15_random            9375486 15 +  10928107 I
e panTro4.chr15_GL392289_random    176137 0 -    187897 C

a score=125408.000000
s hg38.chr15_KI270850v1_alt         92371 177 +    430880 TGATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCTTGCATGGCCTATGAAGTGTGTTGTGGGATGACCGCGTGTATAGGACTCTCAGGCTTTTATCCTAGATCACCACTGG---ATTGCTGACAGATAGAGGACGTGGGACCGTGACTATCACCCCTAATCTGCAGTGGATTTGG
s ponAbe2.chr15_random            9375501 173 +  10928107 TGATGGTACCTGGGAGGGAGGGAAGAGGGCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGCGATGACGGCGTGTATGGGACTGTCAGGCTTTTATCCTAGATCACTGCTGG---ATTGCTGACAGA----GGACGTGGGACCCTGACTGTCACCCCTAATCTGCAGTGGATTTGG
i ponAbe2.chr15_random          I 15 C 0
s rheMac3.chr7                   54032777 176 + 170124641 TGATGGTACCTGGGAGGATGGGAAGGGGGCTGTGTGTCCCTTCCTGGCCTGTGAAGTGTGTTGTGGGATGACCATGTGTATGGGACT-TTAAGATTTTATCCTAGATCATCACTGG---ATTGCCAACAGATAGAGGAGGTGGGACCCCGACTATCACCGCTGCTCTGCAGTGGATTCGG
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50406561 177 -  58131712 TGATGGTACCCGGGAGGATGGGAAGTGGGCTGTGTGTCCCTGCCTGGCCTGTGAGGTGTGTTGTGGGATGACCATGTGTATGGGACTCTTAAGGTTTTATCCTAGATCATCACTGG---ATTGCTGACAGATAGAGGAGGTGGGACCCTGACTATCACCCCTGCTCTGCAGTGGATTCGG
i chlSab2.chr26                 C 0 C 0
s calJac3.chr10                 113864326 177 - 132174527 TAATGGCACCTGGGAGGGAGGGAAGAAAGCTGTGTGTCC-TGCCTGGCCTGTGAGGTGTGTTGTGGGATGACTGTGTGTATGGGACTCTCCAGCTTTTACCCGAGATCATCACTGGATTATTACCAGCAGATAGAGGAGATGGGACCCTGACTAGCAC--CTGTTCTGCAGTGGATTTGG
i calJac3.chr10                 C 0 C 0
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=263557.000000
s hg38.chr15_KI270850v1_alt         92548 554 +    430880 CTCTCGGCACTCCCAGGCTGGGAGCTGGATACC-TGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACGGCGTGCCCAGGATGATGTGCCCAGGCCTCTGGCCGCCT--GAGTCCAGCCCCCCACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAGCTCTGTGCCCTCTCTGATGGTTCCACA-----------TCTGCCACCTTCGGCATGGAGCCTGTTGTAAGAGCCCCCAGGCTCAGCCATGGAGACCTTGAGCAGTGGCACTGAGTCCTGTGGCTGGCAGGG-AGGGAAGTGAGACAGCCAGCAGCACAAGGACAGAAAGAGGAAAGAGCAAGGCTGCAGCTCTAGAAGGGAGGGGCAGGCAGCCTGGCTCTGAGGCTCCAGGTATGCCCCCTGTGTGGAGCTGGGGCAGCGGGGCGGGCAGACCATTCATGCAGCAGGCAGTGAGGCATGTACCTACCATGGCTGATGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCCCATGCATGGGTGGGGCAGGC
s ponAbe2.chr15_random            9375674 557 +  10928107 CTCTCAGCACTCCCAGGCTGGGAGCTGGATACCCTGCCCTCGCAGCATGACTCAGACTGCACTACAGGTACGGCATGTCCAGGATGATGTTCCCAGGCCTCTGGCTGCCTCAGGGTGCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAACTCTGTGCCCTCTCTGACGGCTCCACA-----------TCTGCCAGCTTGGGCATGGAGCCTGTTCTAAGAGCCCCCAGGCTCAGCCATGGAGACCTGGAGCAGTGGCACTGAGTCCTGTGGCTGGCAGGG-AGGGAAGCGAGACAGCCAGCAGCACAAGGACAGAAAGAGGAAAGAGCAAGTCTGCAGCTCCAGAAGGGAGGGGCAGGGAGCCTGGCTCTGAGTCCCCAGGTATGCCCCCTGTGTGGAGCTGGGGCAGCGGGGCGGGCAGACCATTCATGCAGCAGGCAGCGAGGCATGTACCTACTATGGCTGATGCTCCTCAAGGGCCACTGATAGTGATTCTGAAAGACAGCTTCAAATC-ACATGGCAGGTCACATGGATGGGTGGGGCAGGC
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54032953 566 + 170124641 CTCTCGGCACTCCCAGGCTGGGAGCTGGATGCCCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTATGGTGTGCCCAGGATGACGTTCCTAGACCTCTGGCCTCCTCAGAGTCCAGCCC--CACACAATGCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGGGCTCTATGCCCTCTCTGATGGCTCCAGAGAGCACCCATGTCTGCCAGCTTGGGCATGGAGCCTGTTCCGAGAGCACCCAGGCTCAGCCATGGAGGCCATGGGCAGTGGTGCTGAGTCCCATGGCTCACAGGGAAGGGAGGTGAGAGAGCCA-CAGCACGAGGACAGAAAGAGGAAAGAGCAAATCTGCAGCTCCAGAAAGGAGGGGCAGGGAGCCTGGATCTGAGGTCCCAGGTGTGCCCCC-GTGTGGAGCTGGTGCAGTGGGGCGGGAACACCATTCATGCAGCAGGCGGCGAGGCATGTACCTACCACGGCTGATGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCATCAAATCAACATGGCAGCTCATATGCATGGGTGGGGCAGGC
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50406738 566 -  58131712 CTCTCGGCACTCCCAGGCTGGGAGCTGGATGCCCTGCCCTGGCAGCATGACTCAGACTGCACGACCGGTATGGCGTGTCCAGGATGACGTTCCTAGACCTCTGGCCTCCTCAGAGTCCAGCCC--CACACAACGCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAGCTCTATGCCCTCTCTGATGGCTCCAGAGAGCACCCATGTCTGCCAGTTTGGGCATGGAGCCTGTTCCAAGAGCACCCAGGCTCAGCCATGGAGGCCATGGGCAGTGGTGCTGAGTCCCATGGCTCACAGGGAAGGGAGGTGACAGAGCCA-CAGCATGAGGACAGAAAGAGGAAAGAGCAAATCTGCAGCTCCAGAAAGGAGGGGCAGGGATCCTGGATCTGAGGTCCCAGGTGTGCCCCC-GTGTGGAGCTGGTGCAGTGGGGCGGGAACACCATTCATGCAGCAGGCGGCAAGCCATGTACCTACCATGGCTGATGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCATCAAATCAACATGGCAGCTCACATGCATGGGTGGGGCAGGC
i chlSab2.chr26                 C 0 C 0
e calJac3.chr10                 113864503   0 - 132174527 C
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=748176.000000
s hg38.chr15_KI270850v1_alt         93102 1002 +    430880 CTGGGGGTGGCGG----ACACACGCACACGCCAGATTGTGCACACACATGCTGTGAGGCCCCACGGCCCGCATGCACACTCTAACAC--ATGCCCACAAACA--ACACGC-ATACGTCGCCCTCTCCGCCACCTCCCGGTGCCCAACACCCTCACCAGCCGGCACGTGCCGCATGGATCTGGGGCGTGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCGCACACAGAGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTGGCGTGCTCAGAGGACCACCCATCCTGCTCAGGGAGACAGGGCTTGCTCACTAATGTCCGGCTGTCATTTCTCCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCGTTGAATCCCAACAAGTCATACTCTTTGGACTTTGAAGGTTCTCCACCCTGTGCCCCACCCTCCCCACAGAGCTCTTCCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGTGGCTATCCTCAATGTGACCCACACTACACCTCTGCCCACACTGCAGCTCTTTACCCAGTTACCCTCCAGTTCCTCACAACGTATGCCTATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCCAAAGGTTTCGTGTGTGTGTTAGCAAGACTGGAGTCAGAGCAGGCATCAAACTTTACATCCCATATGTCACACCTCACCATAGACCTGGGTGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGCAGTTAGCAAAGTGCTCCTACAGCCGCAtctgcggttaacatagcatccctatggccactgtctcccttgatccccacagccatcctaggagaaaggcagaatgtcataatttgctaaaagggatgctgaggctctgggagggaaagggacttgcctaaagccccagggtgaagcagcatctctggactccca
s ponAbe2.chr15_random            9376231  977 +  10928107 CTGGGGGTGGGGGACACACACACGCACACGCTGGAGTATGCACACACATGCTGTGAGGCCCCACGGCCCGCATGCACACGCTAACAC-----------------ACATGC-------CACCTTCCCCGCCACCTCCTGGTGCCCAGCACCCTCACCAGCCAGCACGTGCCACATGGATCTGGGGCGTGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCACACACAGAGGCTTTTGCACCAGCTCCCTGCACACTCATGCCTGGCGTGCTCAGAAGACCACCCGTGCTGCTCATGGAGACAGGGCTTGCTCACTAATGTCCAGCCCTCATTTCTCCACCTAAGAGCCTTCCGTGGCTCCCTACTGCCTACAGCATTGAATCCCAACAAGTCATGCTCTTTGGACTTTGAAGGTTCTCCACCCCGTGTCCCACCTTCCCCACAGCGCTCTTCCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGTGGCTGTCCTCGATGTCACCCACACTGCAGCTCTGCCCACACTGCAGCTCTTTACCCAGTTACCCTCCAATTCCCGGCCACGTAAGCCTATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCCAAAGGTTTCATGTGTGT----------TTGGGGTCGGAGCAGGCATCAAACTTTACATCCCATATGTCACACCTCACCATAGACCTGGGTGCCAAATAGCCTAAAGAGTCTGAATTCTCGTTGGCAGTTAGCAAAGTGCTCCTACGGCCGCAtctgcagttaacatagcatccctatggccactgtgtcccttgatccccacagccatcctaggagaaaggcagaacatcatcatttgatagaagggatgctgaggctctgggagggaaagggacttgcctaaagccccagggtgaagcagcatctctggactccta
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54033519 1000 + 170124641 CTGGGGTTGGGGGACACACACATGCACTTGCCGGGGTGTGCACACACATGCTGTGAGGCCCCACTGTTGGCATGCACATGCTAACACACATGCCCACA------ACACGC-ATACGCCTCCTTCCCTGCCACCTCCCAGTGCCCAGCACCCTCACTGGCTGGCACGTGCAGCACAGATCTGGGGTGTGCAGCCACTCGGCACACTGAAGCACACACATGGGCAGAGTCACAACACAGAAGCTCACCCACACACAGAGGCATTTGCACCAGCTCCCTGCACACTCATG-CTGGCATGCTCAGAGGACCATCCATGCTGCTCATGGAGACAGCGCTTGCTCGCTAATGTTCAGCTGCCATTTCTCTACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCATTGAGCCCCAACAAGTCATACTCTTCGGACTTTGAA-GTTCTCCACCCTATGCCCCACCCTCCCCACAGAGCTCTTTCTCTTTCTGTCTCTGTTCCCTGCTTTGGCCAGTGGGTGTCCTCAGTGAGTCCCACACTAAACCTCTGCCCACACTGCAGCTCTTTACCCAGACACCCTCCAATTCCTCATCACATAAGCCTATCTCAGTCATGCCCCAGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGATCATGACTTGCCAAATGTTTCACATGTGT--TAGCAAGACTAGAGTTGGAGCAGACATCAAACCTTACATCCCATATGTCACACCTCACCACAGACCTAGGTTCCAAATACCCTGAAGAGTCTGAACTCATGTTGGTAGTTAGCAAAGTGCTCCtatggccacatctacagttaacacagtatccctatgaccactgtctcccttgatccccacagccaccctgggagaaaggcagaaagaaatcatttgatagaaaggacgctgaggctctgggagggaaagggacttgcctgaagtcccagggtgaagcagcatctctggactccca
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50407304 1000 -  58131712 CTGGGGTTGGGGGACACACACACGCACATGCTGGGGTGCGCACACACATGCTATGAGGCCCCACTGCTGGCATGGCCACACTAACACACATACCCACA------ACACGC-ATACGCCTCCTTCCCTGCCACCTCCCAGTGCCCAGCATCCTCACTGGCTGGCACGTGCAGCACAGATCTGGGGCGTGCAGCCACTTGGCACACTGAAGCACACACATGGGCAGAGTCACAACACAGAAGCTCACCCACACACAGAGGCATTTGCACCAGCTCCCTGCACACCCATG-CTGGCATGCTCAGAGGACCATCCATGCTGCTCATGGAGACAGTGCTTGCTTGCTAATGTTCAGCTGCCATTTCTCTACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCTTTGAGCCCCAACAAGTCATACTCTTCGGACTTTGAA-GTTCTCCACCCTATGCCCCACCCTCCCCACAGAGCTCTTTCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGCGGCTGTCCTCAGTGAGTCCCACACTAAACCTCTGTCCACACTGCAGCTCTTTACCCAGATACCCTCCAATTCCTCGTCACATAAGCCTATCTCAGTCATACCCTGGACTCCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGACTTGCCAAATGTTTTGCTTGCAT--TAGTAAGACTAGAGTTGGAGCAGGCATCAAACCTTACATCCCATATGTCACACCTCACCACAGACCTGGGTGCCAAATACCCTGAAGAGTCTCAACTCACGTTGGTAGTTAGCAAAGTGCTCCTACAGCCGCAtctgcagttaacacagcatccctatgaccactgtctcccttaatccccacagccaccctgggagaaaggcagaaagaaatcatttgatagaaaggatgctgaggctctggaagggaaagggacttgcctgaagtcCAAGGGTGAAGCAGCATCTCTGGACTCCCA
i chlSab2.chr26                 C 0 C 0
s calJac3.chr10                 113864503  993 - 132174527 CTGGAGGGG--------ACACATGCAAACATCCAGGTGTGCACACATGCATTGTGAGGCCCCATGGCCCGCATGCACATGCTAACACACATGCCCACAAACACCACAAACAATACACCTCCTTCCCTTCCACCTCCTGGTGCCCAGCACCCTCACTGGCCTGCACATGAAACACAGGTCTGGGGTGTGCAGCTACTCGGTACACTGAAGCACAAGCGTGGGCAGAGTCATGACACAGAAGCACACCCGCACACAGAGGCATTTGAACCAGCTGACTGCCCACGCGTGCCTGGCATGCTCAGAGGACCACCCATGCTGCTCATGGAGACAGGACTTGCTCGCTAATGTCCAGCTGTCATTTCTCCACCTACAAGCCTTCCATGGCTCCCTACTACCTACAGGATTGAGCCCCAACAAGTCAAACTCT--GGACTTTGAAGGTT---CACCCTAGGCCTCACCCTCCCCACAGAGCTCTTCCTCATTCTGTCTCTGTTCCCTGCTGTGGCCAGTGGCTGTCCTCCATGCGGCCCACACTACACCTCTGCCCACACTGCAGCTCTTTATCCAGATACCCTCCAATTCTTTGCCATGTAAGCCTATCTCAGTCATGCCCCAGACCGCAGAGAAGTCAGGCTGCCTTGAAGAAACTCTCCCAGACTGCTCTTTTCCCCAAGGCAGGGCCATGATTTGCGAAACATTTCATGTGTGT--TACCAAGACTGGAGCTGGGGCAGGCATCAAACCTTACATCCCATATGTCACACCTCACCATAGACCTGGGCACCAACT---CTGAAGAGTCTGAACTCACATCGGCAGTTAGCAAAGTGCtcatatggccacatctactgttaacacagcatccctatggccactgtcttccttgatcttcataaccaccctgggagaaaggcagaacatcatcatttgatagaagagatgctgaggctgtggaagggaaagggatttgcttaaaggcccagcgtgaggcagcatctctggactccca
i calJac3.chr10                 C 0 C 0
e papAnu2.chr7                  102469642    0 - 162156779 I
e macFas5.chr7                   65259842 94363 + 171882078 I
e panTro4.chr15_GL392289_random    176137    0 -    187897 C

a score=484485.000000
s hg38.chr15_KI270850v1_alt         94104 453 +    430880 gtccagtgatcttgcccaatactttgctgcttgcctaTACCCCTCTAACTTGGTCAACAGCACATCACAGGGCAAGCCCCAATCCCTGCTTCATTTTTATATATGGGCGCTGGTCCCACAGCCCCACTCTCCAGCCATTTGGAAACAAAAACAGATGCTATTGTTCTTCCTTAGAGAACGTGGCCAGTGGAGAC--GGCACACTGGA-------AATCAGAGTGAATG-----TTCTTGAAAGAGGGTCACGGGTCAACAAGGCCCAGCCAAAGGATGCAGTAGAACCATTTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGCCACTCCCATCCCTGCCCTCGCGGCTACCACTACCCCATTAGTTTAGACAGGGTCGGG-------CGGGGA------GGGGTGTGGA--GAAGAAATGAGCTTGCCTGTGGCCCCCAGGCTC------------CCTCTGTCCTAGCTCAGGTCTGGGTGCCATTCT
s ponAbe2.chr15_random            9377208 479 +  10928107 gtccagtgatcttgcccaatactatgctgcttGCCTTTACCCGTCTAACTTGGTCATCAGCACATCATAGGGCAAGCCCCAATCCCTGCTTCATTTTTGTATATGGGCGCTAGACCCACAGCCCCACTCTCCAGCCATTTGGAAACAAAAACAGATGCCATTGTTCTTCCTTAGAGAACGTGGCCAGTGGAAACAGGGCACACTGGA-------AATCAGAGTGAATG-----TTCCTGAAAGAGGGTCACGGTTCAACAAGGCCAAGCCAAAGGATGCAGTAGAACCATTTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGCCACTCCCATCCCTGCCCTTGCAGCTACCACTACCCCATTAGTTTAGACAGGGTCGGGAGTAG-AGGGGGAGGGGTCGGGGTGTGGA--GAAAAAATCAGCTTGCCTGTGGCCCCCAGGCTCCTTCCCCAGCTGCTTCTGTCCTAGCTCAGGCCTGGGTGCCATTCT
i ponAbe2.chr15_random          C 0 I 7
s rheMac3.chr7                   54034519 464 + 170124641 gtccagtgctcttgcccaatactgcactgcttgcctcTACCCATCTCCGTTGGTCATTACCACATCCTAGGGCAAGCCCCAATCCCTGCCTCATTTTGGTTTATGGGCGCTGGACCCACAGCCCCACTCTCCAGCCATTTGGAAACAAAAACAGATACTATTGTTCTTCCTTAGAGAACGTGGCCAGTGGAAACAGGGCACACTGGG-------AATCAGAGTGAATG-----TCCTTGAAAGAGGGCCATGGGTCAACAAGACCAAGCCAGAGGAT---GTAGAATGCTTTTCCTTAGAAATCTTTGGGAATGAAGTGGGCTTCAGACACTCCCATCCCTTCCCCGGCAGCCACCCCTATCACATTGGTTTAGACTGGGTAGGGT------GGGGGG------GGGTGGTGGA--TAAAAAATCAGATTGCTCATGGCCCCCAGGCTCCTTCCCCAGCTGCTTCTGTCCTAGCCCAGGCTT-GGTGCCATTCT
i rheMac3.chr7                  C 0 I 28
s macFas5.chr7                   65354205 466 + 171882078 gtccagcgctcttgcccaatactctgcTGCTTGCCTTTACCCATGTAACTTGGTCATCAGCACGTCATAGGGCAAGCCCCAATCCCTACTTTGCTTTTGTATATGGGCGCTGGACCCACAGCCCCACTCTCCAGCCATTTGGACACAAAAACAGATGCTATTGTTCTTCCTTAGAGAACGTGGCCAGTGGAAACAGGGCACACTGGA-------AATCAGAGTGAATG-----TCGTTGAAAGAGGGTCATAGGTCAACAAGGCCAAGCCAAAGGTTGCAGTAGAATGCTCTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGTCACTCTCATCCCTGCCCCTGCAGCTGCCACTACCACATTAGTTTAGACAGGGTCAG--------GGGGTG------GGGATGTGGA--GAAAAAATCAGACTGCCTGTGGCCCCCGGGCTCCTTCCCCAGTTGCTTCTGTCCTAGCTTAGGCCTGGGTGCCACTCT
i macFas5.chr7                  I 94363 I 7
s chlSab2.chr26                  50408304 459 -  58131712 --------GTCTTGGCCAATACCACGCTGCTTGCCTCTACCCATCTCGGTTGGTCATTACCACATCCTAGGGCAAGCCCCAATCCCTGCCTCATTTTGGTTTATGGGCGCTGGACCCACAGCCCCACTCTCCAGCCATTTGGAAACAAAAACATATGCTATTGTT-TTCCTTAGAGAACGTGGCCAGTGTAAACAGGGCACACTGGG-------AATCAGAGTGAATG-----TCCTTGAAAGAGGGCCATGGGTCAACAAGTCCAAGCCAGAGGAT---GCAGAATGCTTTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGACACTCCTATCCCTTCCCCGGCAGCCACCCTTACCACATTGGTTTAGACTGGGTAAGGTGGCG--GGGCGG------GGGAGGTGGA--TAAAAAATCAGATTGCTCATGGCCCCCAGGCTCCTTCCCCAGCTGCTTCTGTCCTAGCCCAGGCTT-GGTGCCATTCT
i chlSab2.chr26                 C 0 I 28
s calJac3.chr10                 113865496 488 - 132174527 gtccagtgctcttgcccaataccatgctgcttGCCTCTACCCATCTACGTTGGACATCTGCACATCCTAGGGCAAGCCCCAATCCCCCCTTGTTTTGGTTATATGGGCGCTGGACCCACAGCCCCACCCTCCAGCCATTTGGAAACAAAAACAGATGCCATTGTTCTTCCATAGAGATTGTGGCCGGTGGAAACAGGGCACACTGGGCACATTCAAACGGGGCAAACAGGCCCTCCTTGAAAGAGGGCCATGGGTCAACAGGGCCAAGCCAAAAGGTGCAGTAGAACGCTTTTCCTTAGAAATCTTTGGGAGTGGAGAAGGCTTCAGCCACTCCCATCTCTGCCCCTGCAGCCACCCCTAGCACATCGGTGTAGACCAGGTAGGGAGGGGCAGGGGCG------GTGAGGTGGAGGGAAAAAATCAGATTGCCTACGGCCCCCAGGCTCCTTCCCCAGCTGCTTCTGTTCTAGCCCGGGGCTGGGGGCCATTCT
i calJac3.chr10                 C 0 I 7
e papAnu2.chr7                  102469642   0 - 162156779 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=6847.000000
s hg38.chr15_KI270850v1_alt         94557 23 +    430880 TTACACTCGTGTGCTCGCTCACG
s ponAbe2.chr15_random            9377694 23 +  10928107 TCACACTCGTGTGCTCGCTCACG
i ponAbe2.chr15_random          I 7 C 0
s macFas5.chr7                   65354678 23 + 171882078 TCACACTCGTGTGCTCACCTGTA
i macFas5.chr7                  I 7 C 0
s calJac3.chr10                 113865991 21 - 132174527 TCACACTCATGTGTGCACACA--
i calJac3.chr10                 I 7 C 0
e chlSab2.chr26                  50408763 28 -  58131712 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e rheMac3.chr7                   54034983 28 + 170124641 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=185225.000000
s hg38.chr15_KI270850v1_alt         94580 162 +    430880 CACACATCACACACCTTGCTGGTCACACAGTCACAGACTCGCCTCTGCTCCTGTGGTCCAGTGGCCGGACACCCCCTGGGATGGCTCAAAGGAGTCAGGACTTGGAAGTGGGGACATCAGGGTAGCTGAAGGAAATCCACACACCCAGAGCATCTCGGAGTT
s ponAbe2.chr15_random            9377717 162 +  10928107 CACACATCACACACCTTGCTGGTCACACAGTCACAGCCTGGCCTCTGCTCCTGTGGTCCAGTGGCCGGACACCCCCTGGGATGGCTCAAAGGAGTCAGGACTTGGAAGTGGGGACATCAGGGTAGCTGAAGGAAATCCACACCCCCAGAGCATCTCGGGGTT
i ponAbe2.chr15_random          C 0 M 215
s rheMac3.chr7                   54035011 162 + 170124641 CACACATCACAAACCTTGATAGTCACACAGTCACAGCCTGGTCTCTGCTCCTGTGGTCCAGTGGCTGGACACCCCCTGGGATGGCTCAAAGGAGTCAGGACTTGGAAGTGGGGACATCAGGGTAGCTGAAGGAAATCCACACACCCAGCGTATCTCAGGGTT
i rheMac3.chr7                  I 28 C 0
s macFas5.chr7                   65354701 155 + 171882078 CACACATCACACATCTTGTTGGTCACAGAGTCACAGCCTGGCCTCTGCTCCCATGGTCAAGTGGCCCGATACCCCCAGGGATGGCTCAAAGGAGTCAGGACTTGGATGTGGGGACATCAGGGTAGCAAAAAGAAATCCACACACCCAGAGCATC-------T
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50408791 162 -  58131712 CACACATCACAAACCTTGATGGTCACACAGTCACAGCCTCGTCTCTGCTCCTGAGGTCCAGTGGCTGGACACCCCCTGGGATGGCTCAAAGGAGTCAGGACTTGGAAGTGGGGACATCAGGGTAGCTGAAGGAAATCCACACACCCAGCGTATCTCAGGGTT
i chlSab2.chr26                 I 28 C 0
s calJac3.chr10                 113866012 161 - 132174527 CACACATCACACACCTTGTTGGTCACACAGTCACAGCCTGCCCTCTACTCCTGTGGGCCAGTGGC-AGAAATCCACTGGGATGGCTCAAAAGAGTCAGGACTTGGAAATGCAGACATCAGGGTAGCTGAAACAAATCCACACACCCAGAGCAGACTGGGGTT
i calJac3.chr10                 C 0 C 0
e papAnu2.chr7                  102469642   0 - 162156779 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=54593.000000
s hg38.chr15_KI270850v1_alt         94742 99 +    430880 CAGACTCTCAGACCTGAAGTAGGCGCCCCCGGGACTGGGCTAGGAGTTGGACGGAATGGAGGATGGAGGACAGCGAGAAGAAAGGAAGAGAAATGCAAC
s rheMac3.chr7                   54035173 95 + 170124641 CAGACTCTCTGACCTGAGGTAGGCTCCCCAGGGGCTGGGAGAGGAGTTGGAGGGAATGGAGGATGGAGGACAGCGAG----AAGGAGGAGGAATGCAAT
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65354856 91 + 171882078 CAGACTCTCAGACCTGAGCTAGGTTTCGCA--------GAGAGGAGTTGGACAGAACGGAGAATGGAGGACGGCGAGAAGAAAGGATGAGGGATGCAAC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50408953 95 -  58131712 CAGACTCTCTGACCTGAGGTAGGCACCCCATGGGCTGggagaggagttggagggaatggaggatggaggacagcgag----aaggaggaggaATGCAAT
i chlSab2.chr26                 C 0 C 0
s calJac3.chr10                 113866173 82 - 132174527 CAGACTCTTAGGCCTGAGGAAGACTCCCTG-----------------AGGACAGAATGGAGGATGGAGGACAGCAAGAAGAAAGGAGGAGGAATGCAGC
i calJac3.chr10                 C 0 I 79192
e papAnu2.chr7                  102469642  0 - 162156779 I
e ponAbe2.chr15_random            9377879 215 +  10928107 M
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=22519.000000
s hg38.chr15_KI270850v1_alt         94841 49 +    430880 GTGT-GGGCAGCCGCCAAGAGTGAAAATAGAGGGAAGTGTCATGCAAGTG
s rheMac3.chr7                   54035268 50 + 170124641 GGGTGGGGCGGCCGCCAAGAGTGAAAATAGAGGGAAGCGCCATGTAAGTG
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65354947 49 + 171882078 GTGT-GGGCGGCCACCAAGAGTGAAAATAGAGGGAAGTGCCACCTAAGTG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50409048 50 -  58131712 GTGTGGGGCGGCCGCCAAGAGTGAAAATAGAGGGAAGCACCATGTAAGTG
i chlSab2.chr26                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e ponAbe2.chr15_random            9377879 215 +  10928107 M
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=144290.000000
s hg38.chr15_KI270850v1_alt         94890 198 +    430880 CTGGACAGAAGGCGGCAGGTGGGACGAGCCCCACAGCCCCCTCCTCAAAAACGAC-----CACCTCCAGGACTCAGTGATCCCTGGGGGGCAGGCTCTGCCAGCCCTCGGCCACACGTGGCTCCGGCACCCATGGTCCCAGTGCCTTGGATGGAGACGGCCAGTTCTGGCGGCCAGATGTGGTGCTCTGGAATCCAGTCCCAT
s ponAbe2.chr15_random            9378094 201 +  10928107 CTGGACAGAAGGGGGCAGGTGGGACGAGCCCCACAGCCCCCTCCTCAAA--CCACATACACACCTCCAGGACTCAGTGCTCCCTGGGGGGCAGGCTCTGCCAGCCCTAGGCCACATGTGGCTCCGGCACCCATGGTCCCAGTGCCTTGGATGGAGACAGCCAGTTCTGGCAGCCAGGTCTGATGCTCTGGAATCCAGTTCCAT
i ponAbe2.chr15_random          M 215 C 0
s rheMac3.chr7                   54035318 197 + 170124641 CTGGAAAGAAGGGGGCAGGTGGGATGAGCTCCATAGCCCCCTCCCCAAAAATGAC-----CACCTCCGGGACTCAGCGCTCCCTGGGGG-TAGGCTCTGCCAGCCCTCAGCCACACGTGGCTCTGGCATCCATGGTCCCAGTGCCTTGGAAGGAGAGGGCCGGTTCTGGCATCCAGGTCCGATGCTCTGGAATCCAGTCCCAT
i rheMac3.chr7                  C 0 I 9
s macFas5.chr7                   65354996 198 + 171882078 CTGGAAAGAAGGGGGCAGGTGGGACGAGCCCCACAGCCCTCTCCTCAAAAACGAC-----TACCTCCAGGACTCAGCCCTCCCTGGGGGACAGGCTCCGCCAGCCCTCGGCCACACGTGACTCTGGCAGCCATGGTCCCAGTTTCTTGGATGGAGACGGCCAGTTCTTGCGGCCAGGTCGGATGCTCTGGAATCCAGTCCCAT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50409098 187 -  58131712 CTGGAAAGAAGGGGGTAGGTGGGACGAGCCCCATAGCCCCCTCCCTAAAAACGAC-----CACCTCCGGGACTCAGAGCTCCCTGAGGGGCAGGCTCC-----------ACCACACGCGGCTCCGGCATCCAGGGTCCCAGTGCCTTGGAAGGAGAGGGCCGGTTCTGGCAGCCAGGCCCCGTGCTCTGGAATCCAGTCCCAT
i chlSab2.chr26                 C 0 T 32700
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=48806.000000
s hg38.chr15_KI270850v1_alt         95088 252 +    430880 TTCCTTCCTGGCCACGCCTGTCCAGCGGCCTCTTCAGCCGCATTCAGCCCCTACTTACCTGGGGACCCCGGCTGGGGCACGAGAGCACCAGGGGGGTAGGGCCCAAAGGGATCAGGGGAAGCCTCTGGCCTGGAGGGTATGGGGC-ACGCTTCCCCAAGGGCGGACCCGGCAGGAGGAAGCCCAGGAGCTGGGTCCTGCCGCCCAGGAGCTGGGCCCTGCCACCCAGGCCGGGCTAGGGACATGGCAGGGCCT
s ponAbe2.chr15_random            9378295 231 +  10928107 TTCCTTCCCGGCCACGCTCGTCCAGCGGCCTCTTCGGCTGCATTCAACCCCTACTCACCTGGGGGCCCCGGCTGAAGCACGAGAGCACCTGGGGGGTAGGGCCCAAAGGGATCAGGGGAAGCCTCTGGCCTGGAGGATACAGGGC-ATGCTTCCCCAAGGGGGGACCCGGCAGGAGGAAGCCCAGGAGCTGGG---------------------CCCTGCCACCCAGGCCGGGCTAGGGACATGGCAGGGCCT
i ponAbe2.chr15_random          C 0 I 69
s macFas5.chr7                   65355194 230 + 171882078 TTCCTTCCCGGCCACACCCCTCCAGCGGCCTCTTTGGCTGCTTTCAGCTCCTACTTACTTGGTGATCCCTAGTGGGGCATGAGAGCACCTGGCGAGTAGGG-CCGAAGGGATCAGGGGAAGCCTCTGGTCTGGAGGATACGGGGTGGCACTTCCCCAAGGGCGCACCCAGCAGCAGGAAGCCCAGAAGCCGGG----------------------CCCGCAACCCAGGCTGGGCTGGGGACATGGCGGGGGCT
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50409285 32700 -  58131712 T
e papAnu2.chr7                  102469642   0 - 162156779 I
e rheMac3.chr7                   54035515   9 + 170124641 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=3558.000000
s hg38.chr15_KI270850v1_alt         95340  76 +    430880 GGGCATCCTGACGCTGGACTTGGGCGACCTG----------GG-----AGGCACAGGGAGGGGAGAGATGGGCGA---------------CCCCGCCCCAGCGCAG
s macFas5.chr7                   65355424 106 + 171882078 GGGCATCCCGGGGCTGGACTTGGGCGACCTGCAAGGCGACAGGCAGCAAGGCACAGGGACAGGAGACATAGGCGGTTCCGCCCCCTGAGGCGCCGCCCCAGCCCAG
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50409285 32700 -  58131712 T
e papAnu2.chr7                  102469642   0 - 162156779 I
e rheMac3.chr7                   54035515   9 + 170124641 I
e ponAbe2.chr15_random            9378526  69 +  10928107 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=31708.000000
s hg38.chr15_KI270850v1_alt         95416 195 +    430880 -----------------------------TGCCGGCCACACCCCAAGGCGGTTGCCAGAGCTTAAGCCCCGCCCCCAGCAGCGAGAACATCCCAGCTCCACACACCCCCCCCCCCCCCGGCAGCCAGTGCTCCTTGTCAAGCTCCCCCCG--TCACTCCAGGTGGGAGCCACCCCGGTGAGGGGGTGTGCCACTTGCCCCCAGGGCACTCCTCTGGGCATCCCGGG
s ponAbe2.chr15_random            9378595 187 +  10928107 -----------------------------TCCCTGCCGCACCCCAAGGCAGTCGCCTGAGCTTAAGTCCCGCCCCCAGCGGCAAGAACATCCTAGCTCCAC----------CCCGCCCGGCAGCCAGTGCTCCTTGGCAAGCTCCCCCCACTTCACTCCAGGTGGGACACACCCCGGTGAGGGGGTGTGCCACTTGCCCTTAGAGCACTCTTCTGGGCGGCCGGGG
i ponAbe2.chr15_random          I 69 C 0
s macFas5.chr7                   65355530 212 + 171882078 TGCCGGCCACGCCCATGCACGGAAGCTCCTCCCTGCCACGCTCTGATGTGGTCGCCAGAGTTTAAGCCCCG-CCCCAGCAGCACCAACAGCCCAGCTCCAC----------CCCGCCCCGCAGCCAGTGCTCCTCAGCAAGCTCCGCCCC--TCACTCCAGGTAGCAGCCACCCTGGTGAGGGACCACGCCAC-TGCCCCCTTGGCAGTCCTCTGGGCGGCCCAGG
i macFas5.chr7                  C 0 I 12232
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50409285 32700 -  58131712 T
e papAnu2.chr7                  102469642   0 - 162156779 I
e rheMac3.chr7                   54035515   9 + 170124641 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=64762.000000
s hg38.chr15_KI270850v1_alt         95611 807 +    430880 TGGGGG-ATTTTGGGGCCGTGGGGGGCAGTCTTTGGTACCTGTGTTCGTCAGGGATGCTCTG-----ACAACCAGGTGTCGTCCACGGGCGGGGGCATGGGCATGGTGACAGTGGTCCTGTTGATGTCACCGATGATGCTGAGCGCCTCCTTCAGCGCGTGGTGCATGTGCAGCATCTCGTCATGCTGCTGTGCCTGCTCTGCCAACTCCTCCATCAGTGTGTTCTGGTTCCCACATGAGTACATATTGGCCAGCGGCTCCGAGATGATGAACTCCGGGGTCTGAGAGTGGGCAAACAGGGAAGAAGGTTGGGACCTGGTGCCTGTGCCGCCCTGGCTGCCTTGCTGGGCCCTTCTGGG----------ACTGTGCGCTGGACTTGGAGCCCCTTGGAGTATGGCTTTTCACATGGGCTTCTATACCGCTTCGACTGGAAGATCCACCTCCCCACTGCCTTTTCTCACTCAGATGGGGACACCGAGGTCCAGAGGAAAAGACACCTGTCAAATGTCACAGATCTGGGAGGGGACTTAAGACTTATCATGCCAAGAGGACACCTGTCTACTCAGTTTTTTTTT--GGTGGGGCGGGGGGCGGTgatagggtctcgctctgtcaccaggctggagtacagtgatgactgctcactgcagcctccacctcctgggctcaaagtgatcctccaacgtcagcctctcgagtagctaggactacaggcacatgccaccaccaagcccagctatttttaaaatttttgtgtggagacaaggtctcactatgtggcccaggctggtctcgaactcctgggctcaagtgatcct
s ponAbe2.chr15_random            9378782 812 +  10928107 TGGGGGGATTTTGGGGTCGC----------CCCTGGTACCTGCGTTCGTCCAGGACGCTCTGCCCCTGCACCCAGGAGTCGTCCACGGGCAGGGGCACGGGCACGGTGACGGTGGTCCTGTTGATGTCGTCGATGATGCTGAGCGCCTCCTTCAGCGTATGGTGCATGCGCAGCATCTCGTCGCGCTGCTGTGCCTGCTCTGCCAACTCC---ATCAGTGTGTACTCATCCCCACACGAGTACAGAGTGGCCAGCGGCTCCGAGATGATGAACTCCCTGGTCTGAGAGTGGGCAAACAGGGAAGAAGGTTGGGACCTGATGCCTGTGCCGCCCTGGCTGCCTtgctgggccctgctgggccctgctgggACTGTGCGCTGGACTTGGAGCCCCTTGGAGTATGGCTTTTCACACGGGCTTCTATACCGCTTCAACTGGAagatgcacctccccaccgccttttctcactcagatggggacaccgaggtccagaggaaaagacacctgtccaatgttacaGATCTGGGAGGGGACTTAGGACCTATCACGCCAAGAGGACACCTGTCTACTCAGTTTTTTTTTTTGGCGGGACGGTGGGCAGTgacagggtctcgctctgtcaccaggctggagtacagtgatcactgctcactgcagcctcaacctcctgggctcaaagtgatcctccaacatcagcctctcgagtagctaggactacaggcacgtgccaccaccaagcccagctatttttaaaatttttgtgtggagacaaggtctcactatgttgcccaggctggtctcgaactcctgagttcaagtgatcct
i ponAbe2.chr15_random          C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50409285 32700 -  58131712 T
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54035515   9 + 170124641 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=1153.000000
s hg38.chr15_KI270850v1_alt         96418 9 +    430880 cctgcctcg
s ponAbe2.chr15_random            9379594 9 +  10928107 ccttcctca
i ponAbe2.chr15_random          C 0 C 0
s mm10.chr9                      67700508 9 - 124595110 CCCTCCCCT
i mm10.chr9                     N 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50409285 32700 -  58131712 T
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54035515 9 + 170124641 I
e panTro4.chr15_GL392289_random    176137 0 -    187897 C

a score=62666.000000
s hg38.chr15_KI270850v1_alt         96427 111 +    430880 gcctccaggagtgGGAGTTGGAGT-----TGATGCCTGGATACA----GGAGCT-CTGTG------------GGTGGGAGTGAGACAAAACACAGGGTCCTGAGCTCTGGGGACCaagcaatgtcctctggtg
s ponAbe2.chr15_random            9379603 111 +  10928107 gcctccAGGAGTGGGAGTTGGAGC-----TGATGCCTGGATACA----GGAGCT-CTGTG------------GGTGGGAGTGAGACAAAACACAGGGTCCTGAGCTCTGGGGAGCAAGTAGTGTTCTCTGGTG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95266862 111 + 121039945 GCCCCCAGGAGTGGGAGTGGGAGC-----TGATGTCTGGGTACA----GGAGCT-CTGTG------------GGTGGGAATGAGACAAAACACAGGGTCTTGAGCTCTGAGGAGCaagcagtgtcctccagtg
i nomLeu3.chr6                  N 0 C 0
s chlSab2.chr26                  50376585 111 -  58131712 GCCCCCAGGAGTGGGAGTGGGAGC-----TGATGCCTGGATACA----GGAGCT-CTGTG------------GGTGGGAGTGAGACAAAACACAGGGTCCTGAGCTCTGGGGAGCAAGCAGTGTCCTCCGGTG
i chlSab2.chr26                 T 32700 C 0
s mm10.chr9                      67700517 124 - 124595110 GCCCCCAGCAGTGGTGGTGGAGGTCAGCGTGACACCTGGCTGCCTGTTGGTGCTCCTGTACGAGAAGGCCCTAGCGAGCAAAAGGCAAAACTCGGG----CCAGGTGCGGGGA-----CAGTATCCTTAGGTG
i mm10.chr9                     C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54035515   9 + 170124641 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=66578.000000
s hg38.chr15_KI270850v1_alt         96538 107 +    430880 aaaaaaatcctggacttgctggcagaa------------gatttgcctcttactcgccatgtgctctgaatacattta-cctgccctctgggagcttcagttttcttatctgaaaaatga
s ponAbe2.chr15_random            9379714 107 +  10928107 Aaagaaatcctggacttgccagcagaa------------gttttgcctcttactggccatgtgctctgaatacagtta-cctgccctccaggagcttcagtttccttatctgaaaaatga
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95266973 105 + 121039945 aaggaaatcctggactcgcaggcagaa------------gttttgcctcttacttgccatgtgctctgaataaagtta-cctgccctccacgagcct--gtttccttatctgaaaaatgg
i nomLeu3.chr6                  C 0 C 0
s chlSab2.chr26                  50376696 108 -  58131712 Aaggaaatcctggactcgcaggcagaa------------gttttgcctcttactcgccatgtgttctaaataaagttaccctgccctccaagagcctccgtttccttatctgaaaaatgg
i chlSab2.chr26                 C 0 I 32488
s mm10.chr9                      67700641  99 - 124595110 AAGGGAACTCAAGGCTT---AATCCTG------------GTCTTGCTTCTTACGAGCCATG-ATACTGAATAAAAGTC-ACCAGACTGCATATGC----ACTTCTTTATCTACAAACTGA
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38470704 116 +  40214260 aaaaaaGGCctggactagtagttagcagccggaatcctggttttgcctcttaccgaccacatgctctgg--acggtcg-cctgacctccgtaagcctcagtttccttatctgcaaaacg-
i canFam3.chr30                 N 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54035515   9 + 170124641 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=3000.000000
s hg38.chr15_KI270850v1_alt         96645 2 +    430880 gg
s ponAbe2.chr15_random            9379821 2 +  10928107 gg
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95267078 2 + 121039945 gg
i nomLeu3.chr6                  C 0 C 0
s chlSab2.chr26                  50409292 2 -  58131712 GG
i chlSab2.chr26                 I 32488 C 0
s mm10.chr9                      67700740 2 - 124595110 GG
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38470820 2 +  40214260 gg
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54035515 9 + 170124641 I
e panTro4.chr15_GL392289_random    176137 0 -    187897 C

a score=307159.000000
s hg38.chr15_KI270850v1_alt         96647 267 +    430880 acacctgaccccttccctgcccagttcagtgttgtgggacagggttg----ctgtcaagaCAATACCCAGTCCTGCCCT-CCTCCCTGAGTGGGCCAGGTAGC-----CCATGTAGCCTCTTCCCAGCTTTCCTGGGTGGCACTGC-AGCCTGG--------TGCCCATTCAATCT--AGTCCTTCATCTTGCTGGAGCATG-GGGAAGCTCTGAGTAACATGGGACTATAGAGTGCAAGAGGGTTGCTGATGGTCTGGGTCCTGTGCCCTCCTCATTCCTGGGCATTC
s ponAbe2.chr15_random            9379823 275 +  10928107 acacctgaccccttccctgcccagttcagtgttgtGGGACAGGGCTG----CTGTCAAGACAATACCCAGTCCTGCCCT-CCTCCCTGAGTGGGCCAGGTAGC-----CCATGTAGCCTCTTCCTCGTGTTCCTGGGTGGCACTGCCAGCCTGGCCCCCTGGTGCCCATTCAATCT--AGTCCTTCATCTTGCTGGGGCACG-GGGAAGCTCTGAGTAACATGGAACTATAGAGTGCAAGAGGGTTGCTGATGGTCTGG-TCCCGTGCCCTCCTCATTCCTGGGCATTC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95267080 275 + 121039945 acacctgaccccttccctgcccagttcagtgttgtGGGACAGGGCTG----CTGTCAAGACAATACACAGTCCTGCCCT-CCTCCCTGAGTGGGCCAGGTAGC-----CCATGTAGCCTCTTCCCCACTTTCCTGGGTGGCACTGCCAGCCTGGCCCCCTGGTGCCCATTCAATCT--AGTCCTTCATATTGCTGGGGCACG-GGGAGGCTCTGAGTAACGTGGGACTATAGAGTGCGAGAGGGTTGCTGATGGCCTGG-TCCCGTGCCCTCCCCATTCCTGGGCATTC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54035524 275 + 170124641 ACATCTGACCCCTTCCCTGCCCAGTTCAGTGTTGTGGGACAGGGCTG----CTGTCAAGACAATCCCCAGTCCTGCCCT-CCTCCCTGAGTGGGCCAGATAGC-----CCATGTAGCCTCTTCCCCACTTGCCTTTGTGGCACTGCCAGCCTGGTACCCTGGTGCCCATTCAGTCT--AGTCCTTCATATTGCTGGGGCATG-GGGAAGCTCTGAGTAACATGGGACTATAGAGTGCACGAGGGTTGCTGATGGCTGGC-TCCCGTGCCCTCCCCATTCCTGTGCATTC
i rheMac3.chr7                  I 9 C 0
s chlSab2.chr26                  50409294 275 -  58131712 ACACCTGACCCCTTCCCTGCCCAGTTCAGTGTTGTGGGACAGGGCTG----CTGTCAAGACAATCCCCAGTCCTGCCCT-CCTCCCTGAGTGGGCCAGTTAGC-----CCATGTAGCCTCTTCCCCACTTGCCTGTGTGGCACTGCCAGCCTGGTACCCTGGTGCCCATTCAGTCT--AGTCCTTCATACTGCTGGGGCATG-GGGAAGCTCTGAGTAATGTGGGACTATAGAGTGTGCGAGGGTTGCTGATGGCCGGG-TCCCGTGCCCTCCCCATTCCTGTGCATTC
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67700742 276 - 124595110 TTACCTGAGCCCTTCTA-GCCCAGT---GTCTTGAAGGGCAGTGGTACTGTCTGTCAATCCACTGCCTACTGCTGCCTGACCTCTGCCAGGGGAGGAGGGTGTCTGTGCCACGTAGCCTCTTTCCAGCCTTCTTGGGTGGCACTGCCAGTCTGGCCCCCTGGTGGCCA--CAGCCTTGTGTCCTTCGTGTTACTGGAGCATG-GGGGGGGGGTGTGTG----TGTGCTGCTGGGTGGGGGAGGGGCACCG-TGGCTTTG-TCCCAGCCTCTCCTCCTTCCAGGACTCTG
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38470822 256 +  40214260 acacccgatccctgccccacccaactcaATACGGCAGGACAGTGGTG----CTGTCGAGACACTACCCAGTCCTGCCCC-CAAGCC----AGGACAAAGTCTC---TGCCACGAAGCCATTTCCCAGCTTCCCTGGGTGGCACTGCCAGCCTGGCCCCCTGCTGGCCACTCCCTTT--CATCC--CATCTTGTTGGGGTGCGCGGAAAGCTCCG---------------TGGGTGGGGGGAGGAACCCCAAAGGCCTGG-TCCTGTCCCCTCCCC-CTCCCGGGCATCC
i canFam3.chr30                 C 0 I 4
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=870813.000000
s hg38.chr15_KI270850v1_alt         96914 1113 +    430880 TTGACAAAGGCTCCCAGCAACTGAGGGTACGCAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGAAG----------GGCACCATAGCAGGAGTGGAGCTCCAGGGAAATACAGAACCGAGGTCTGGGAGGT-GCTGATGTGAGAGGCCCAAGAA-----------------------------------------------------------------------------ACCTCGGCTTTGC-ACTTGCTGAGTACCATCTGC--------------------------------------ACCTCTCAGGAGG---------------------GAGAG-----CGCCAGGCTCAGGAGGTCCTTGCCGAAGCAAGGGAGCTTGAAAAGGGGGCT-GGGGTGGGCTCTGCCA-TTTTCAAGGGCTGACAGGG--------------ATCCCCTCTGGAGGTACTTGGGGCAGTGCTGT-GTGCCGTGGCTCCTGAGTGACAGAGTCAGCTCTGCGCCCCACAAGACCGCTCCCTGCCGAGAACTCACTGTGATCATGTGCTGGGTCCAGATGCTCACGCAGCCTCCTGATGGGAGCATCAGGTGTGCTGCCTGC-CCAGGGCGGCCCACAAGAGTCTGCCCTGCCC----TGCCCT--GCCCTGCTATGGAACAACTCCCATTCTGCCTTTGGGGAGAGGTGTTCATTTAAACCATGAGTG------------GGCTGGCCCCCGTGGCACAGTTACCACAGA----GAGTCTGCCACTACCCATGGCTGAGAGCTCTAGTTCT------------------TCTCTGAAG---CCACCAGGACAGATGAACAGT-GGCTTCCCCC-TTTTGGCCGACTCAGCTGCCTTTCATCAGCTCATCTGCTCCTAGGATCCACTCTTCCT---CTGGCTGGCACCTGATCTGAGCCCGAGGCTCACACCTCTGCCCACAGGCCCCAGCAGCTGCTTCACCTCCGACTCCATCCCCC---ACCAAGCACTGCCCCTC---ACC-AGCTGCTGGGGTGCCACTAGTGCCCCTACATGGTTCTCCCTCTCCAGACCCTTGGGTCCAGCTCTAGCTTCCTTCGGGAAGCCACACCCCAAGACCCCAGCCCTGCTCTGGGGCCCTGTATCCCCGACTTCCTGCATTCTTCTCCCTCCTTCTGGGAACATGAACTTGCCCTGCCAGCCTGATGACTCCTAGAGGGCAGGACACCAGGTCCTGGACCATGGCAGGCCTGGGAGTGTCT-GCTGCCGGTGATGCTGGAGCTGGTGCCCATGTCCACATGATGTCCATGGC
s ponAbe2.chr15_random            9380098 1081 +  10928107 TTGACAAAGGCTCCCAACAACTGAGGGTATGCAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGGAG----------GGCGCCATAGCAGGAGTGGAGCTCCAGGGAAATACAGAACCCAGGCCTGGGAGGT-GCTGATGTGAGAGGCCCAAGAA-----------------------------------------------------------------------------ACCTCAGCTTTGC-ACTTCTTGAATACCATCTGC--------------------------------------ACCTCTCAGGAGT---------------------GAGAG-----TGCCAGGCTCAGGAGGTCCTTGCCCAAGCAAGGGAGCTTGAAAGGGGGGCT-GGGGTGGGCTCTGCCA-TTTTCAAGGGCTGACAGGG--------------GTCCCCTCTGGAGGTACTTGGGGCAGTACTGC-GTGCTGTGGCTCCTGAGTGACAGAGTCAGCTCTGCGCCCCACAAGACCACTCCCTACCCAGAACTCGCTGTGATCATGTGCTGGGTCCAGATGCTCATGCAGCCTCCTGGTGGGAGCATCAGGTGTGCTGCCTGC-CCAGGACAGCCCACAAAAGAGT-----------------CT--GCCCTGCTATGGAACAACTCCCATTCTGCCTTTGGGGAGAAGTGTTCATTTAAACGATGACTG------------GGCTGGCCCCCATGGCACAATTACCACAGA----CAGTCTGCCGCTACCCATGGCTGAGAGCTCTAGTTCT------------------TCTCTGAAG---CCACCAGGATGGATGAACAGTTGGCTTCCCCC-TTTTGGCTGACTCAGCTGCCTTTCATCAGCTCATCTGCTCCTAGGATCCACTCTGCCT---CTGGCTGGCACCTAATCTGAGCCC--------------------CAGGCCCCAGCAGCTGCTTCACCTCCGACTCCATCCCCC---ACCAAGCACTGCCCCTC---ACC-AGCTACTGGGGTGCCACTAGTGCCCCTACATGGTGCTCCCTTTCCAGACCCTCGGGTCCAGCTGTAGCTTCCTTCGGGAAGCTACACCCCAAGACCCCAGCCCTGCTCTAGGGCCCTGTATCCCCGACTTCCTGCATCCTTCTCCCTCCTTCTGGGAACATGAACTTGCCCTGCCAGCCTGATGACTCCTGGAGGGCAGGACACCAGGGCCTGGACCATGGCAGGCCCGGGAGTGTCT-GCTGCCAGCAATGCTGGAGCTGGTGCCCATGTCCACGTGATGTCCATGGC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95267355 1195 + 121039945 TTGACAAAGGCTCCCAGCAACTGAGGGTACGCAGCGGCTGTAGACACCAGCCTGACAAATATCTCATTGTGGGGAG----------GGGACCATAGCAGGAGAGGGGCTCCAGGGAAATACAGAACCCGGGACTGGGAGGT-GTTGATGTGAGAAGCCCAAGAAACTTTATTCCA-CCTGTCAAAGCCACCTCCTTCCAGATGCCCAAAGGCTCCCCATCTGAGCCACTTGCTGGGCGGGGACTTTGGCTTTGC-ACTTGCTGAATACCATCTGC--------------------------------------ACCTCTCAGGAGG---------------------GAGAG-----TGCCAGGCTCAGGAGGTCCCTGCCCAAGCAAGGGAGCTTGGAAAGGGGGCTAGGGGTGGGCTCTGCCATTTTTTCAGGGCTAGTGGGG--------------GACCCCTCTGGAGGTACTTGAGGCAGTACCAT-ATGCTGTGGCTCCTGAGTGACAGAGTCAGCTCTGCA-CCCACAAGACCGCTCCCTACCTAGAATTCACTGTCATCATGTGCTGGGTCCAGATGCCCACGCAACCTCCTGGCAGGAGCATCACATGTGCCGCCTGC-CCGGGACGGCCCACGGAAGAGT---CTGCCC----CGCTCT--GCCTTGCTATGGAACAACTCCTGTTCTGCCTTCGGGGAGAGGTGTTCATTTAAGTGATGACTG------------GGCTGGCCCCCATGGCACAGTTATCACAGA----GAGTCCGCTGCTACCCATAGCTGAGAGCTCTAGTTCT---------TCCTGGTGGTCTCTGAAG---CCACCAGGACGGATGAACAGC-GGCTTCACCC-TCTTGGCCGACTCAGCTGACTTTCATCAGCTCATCTGCCCCTAGGATCCACTCTGCCT---CTGGCTGGCACTTGACCTGAGCCCCAGGCTCACACCTCTGCCCACAGG-CCCAGCAGCTGCTTCACGTCCAACTCCATCCCCC---ACCAAGCACTGCCCCTC---ATC-AGCTACTGGGGTACCACTAGTGCCCCCACATGGTGCCCCCTCTCCAGACCCTCGGGTCCAGCTATAGCTTCCTTCTGGAAGCCATACCCCAAGACCCCAGCCCTGCTCTAGGGCCCTGTATCCCTGACTTCCTGCATCCTTCTCCCTCCTTCTAGGAACATGAACTTGCCCTGCCAGCCTGGCGGCTCCTGGAGGGCAGGACACTAGCGCCTGGACAATGGCAGGCCTGGGAACCTCT-GCTGCCAGTGATGCTGGAGCTGGCACCCGTGTCCACATGATGTCCATGGC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54035799 1132 + 170124641 TTGACAAAAGCTCCCAGCAACCGAGGGTATGCAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGGAG----------GGGGCCATAGCAGGAGTGGGGCTCCAGGGAAATACAGAACCTGGGACTGGGAGGT-GTTGATGTGAGAGGCCCAAGAA-----------------------------------------------------------------------------ACCTCTGCTTTGC-ATTTGCTGAATACCATCTGT--------------------------------------GCCTCTCAGGAGG---------------------GAGAG-----TGCCAGGCTCAGGAGGTCCCTGCCCAAGCAAGGGAGCTTGGAAAGGGGGCTAGGGGTGGGCTGTGCAA-TTTTTGAGGGCTGGGAGGGGGACCAGCCAGCCAGACCCCTCTGGAGGTACTTGGGGCAGTACCGC-CTGCCATGGCTCCTGAGTGACAGAGTCAGCTCTGCACCCCACAAGACCGCTCCCTACCCAGAACTCACTGTGATCATGTGCTGGATCCAGATGCCCATGCAGCCTCCTGGCAGGGGCATCAGTTGCACCACCTGC-CCAGGATGGCCCACGGAAGGGT---CTGCGC----CACTCT--GCCCTGCTATGGAACAACTCCCGTTCTGCCTTCGGGAAGAGGTGTTCTTTTAAGCGATGACTG------------GGCTGGCCCCCATGGCACAGTTATCACAG------AGTCTGCTGCTACCCACGGCTGAGAGCTCTAGTTCT---------TCCTAGTGGTCTCTGAAG---CTACCAGGATGGATGAACGGT-GGCTTCACCC-TCTTGGCCGACTCAGCTGCCTTTCATCAGCTCATCTGCCCCTAGGATCCACTCTGCCT---CTGGCTGGCACCTGACCTGAGCCCCAGGCTCACGCCTCTGCCCACAGG-CCCAGCAGCTGCTTCACCTCCAACTCCATCCCTCTTGACCAAGCACTGCCCCTCTGGACCAAGCTACTGGGGTGCCACTAGTGCCCCCACATGGTGCCCCCTCTCGGTATCCTTGGGTCCGGCTGTAGCTTCCTTCTGGAAGACACACTCCAAAACCCCAGCCCTGCTGTAGGGCCCTGTATCCCTGACTTTCTGCATCCTTCTCCCTCCTTCTGGGAACATGAACTTGCCCTGCCAGCCTGGTGGCTCCTGGAGGA------GCCTGGGCCTGGACCATGGCAGGACCGGGAGCGTCT-GCTGCTAGTGATGCTGGAGCCTGCACCCATGTCCACGTGATGTCCATGGC
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50409569 1118 -  58131712 TTGACAAAGTCTCCCAGCAACCGAGAGTACACAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGGAG----------GGGGCCATAGCAGGAGTGGGGCTCCAGGGAAATACAGAACCTGGGACTGGGAGGT-GTTGATGTGAGAGGCCCAAGAA-----------------------------------------------------------------------------ACCTCGGCTTTGC-ACTTGCTGAATACCATCTGC--------------------------------------GCCTCTCAGGAGG---------------------GAGAG-----TGCCAGGCTCAGGAGGTCCCTGCCCAAGCAAGGGAGCTTGGAAAGGGGGCT-GGGGTATGCTTTGCCA-TTTTTGAGGGCTGGCAGGGG-------------GACCCCTCTGGAGGTACTTGGGGCAGTACAGC-ATGCCATGGCTCCTGAGTGACAGAGTCAGCTCTGCACCCCACAAGACCACTCCCTACCCAGAACTCACTGTGATCATATGCTGGGTCCAGATGCCCATGCAGCCTCCTGGCGGGAGCATCAGTTGCACCATCTGC-CCAGGACGGCCCACGGAAGAGT---CTGCGC----CACTCT--GCCCTGCTATGGAACAACCCCTGTTCTGCCTTTGGGAAGAGGTGTTCGTTTAAGCGATAACTG------------GGCTGGCCCCCATGGCACAGTGATCACAG------AGTCTGCTGCTACCCATGGCTGAGAGCTCTAGTTCT---------TCCTAGTGGTCTCTGAAG---CCACCAGGACGGATGAACCGT-GGCTTCACCC-TCTTGGCCGACTCAGCTGCCTTTCATCAGCTCATCTGCCCCTAGGATCCACTCTGCCT---CTGGCTGGCACCTGACCCGAGCCCCAGGCTCACGCCTCTGCCCACAGG-CCCAGCAGCTACTTCACCTCCAACTCCATCCCTCTTGACCAAGCACTGCCTCTCTGGACCAAGCTACTGGGGTGCCACTAGTGCCCCCACATGGTGCCCCCTCTCGGGATCCTTGGGTCCGGCTGTAGCTTCCTTCTGGAAGACACACTCCAAAACCCCAGCCCTGCTCTAGGGCCCTGTATCCCTGACTTTCTGCATCCTTCTCCCTCCTTCTGGGAACATGAACTTGCCCTGCCAGCCTGGTGGCTCCTAGAGGA------GCCTGGGCCTGGACCATGGCAGGACCGGGAGCATCT-GCTGCTAGTGATGCTGGAGCCCGCACCCATGTCCACGTGATGTCCATGGC
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67701018 1014 - 124595110 ATAAC-AAGGCTCCCAGTGACTCAGGACATACAGCTGCCCTAGCCACTGGC-------AGATTTCATTGTGGGGAGGGGTCAGAAAGGGGCTATGGTAGATGCTAGGGCCTGGGAGAAGTGAGAACAGAAGCCAAAGAAGCAAAAGAAGTGCAGGGTCTGAGGAATCTTACTTGACCCTCTTTAAGGCAGCT-------------------------------------------------TCCTCCTCTGAGCTACCTGCTGGGTGGGAGCTGCTCCCCCACACCCCGCACCTCCCCCCTCTGTGTTCCAGTACTTCTCAGGAGGAGCGCACACCCTGATGGGGTAGAAAGGAACTTGTGGGGCCCAGGAGGCCTCT----------GAGTGCTGGAAAGGGACCCG-GAGGTGGGTCCTGCCC-TTTTCAAGGGTCAGGGTAA--------------GCCCTGTTGGAAAGTTCTTGGAGCAGCACCATAGTGCTGCAGATCC--AGTGGCAGGGCCAGCCATGTTCTCTTGGATCCTGCTC---ATGTAGAAAGAATAGGGGTCA--TGCTG--------TGACCACGTGGCCTCTAGGTGGGAGCACCAAGCATGCTGTTTGCTCTACCGTAGCCCAGAGGAG------CTGCTCACAGTGCCTTAGACCCTG-TGGGGACCAA-------------TCCGTGAAGAG-------------TGATGACTGCTGGCTCACACTAGTTAGCACCGACAGCCCTGGCATCTCAGCCGCTCAGTCAGCCTCAACATGCGGCTGGAAATTATAATTTTGATCGGTGGTCCTGGTGTGCCCTAGGGACTCTGCTCCGAAGAGTAGATCTC-AGTGTCCCTCAGACTGGCCCACT---CTGCCTGGGA----CTCATCTGC-------ATCCAGCTTGCTTACATTCTCTGGCATCTTTCCTGAGTCCCAAGCTCA---------------------------ACTTTATCCCAAACT--GTCCAGCCTAAGTGAGCTCATGCCCTC---ACC-AGCCGCTGGGGTGCCTCTGGCCCTCCTTCCTGGG---CCCTTGTCAGCCTCTGGGATCCAGCTGTGGCTTCCTTCTGGAGGCCTAACCCTGAG----------------------------------------------------------CTGGGA----------------------------------------------------------------CAGGATCCAGAGAAGCTAGCTGCCAGTGAGGTGGATGC-----------TCCAGCTG-----------
i mm10.chr9                     C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38471078    4 +  40214260 I
e papAnu2.chr7                  102469642    0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137    0 -    187897 C

a score=1810311.000000
s hg38.chr15_KI270850v1_alt         98027 1677 +    430880 ACAGTGGCCACCTGAGGCTGGG--CGCATCTGAGTGGTGGCTGCAGAGTGGGGCCCTTACCTCTGCCTGAGTGAAGTTCACCAGGTCCTCCCCTGTGCTGTCATGCTGGGCGTGGAAGAGCCGGCCTAGCTGGAGGCCCCGCACCACATGGTAGAGCAGGAGCTGGGGGTCGGTGCCT--------GCTGGCTCTGAGGCTCTGGCTGCTGAGTGGCTGGACGGACTCTGCCAGAGGCAAAAGGG-GCCATCAGCCTT----TGTGATCCAGGCCGAGGCC-TGTGGCTGCAGAGAGGCAGTGTGACCCTGGCATGCCACCCTCAGCTCTGCCCCAGCCC-CCCG--CACCCAGGAACGCCCACAATCAGCACACCCACCTGGG----CAGTCAGTGTCCGGCTGCCCTCCAGCGAGTGAAGCACTTGCTTCTGGGCCGTCACTCAGAAGCTAAGTGTCTGGAGGAAGTATGTTCACCGTCAGAGAGGCCAAAGTGGATGCCTCCGTCCAGGGCCCCTGGGGACAAG------GGT--GTTGGGTCCAGCTGGCCTGAACTGGCTCCC-CACCTCAGGGTGCCCCCGT------GGGCAGCAGAAACCTGGGGCTCGGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCCACCATCCAGCTGGGTCTGCTTGAAGCTGCGCACCTCAGTGCCCGGCACCGCCCACTGCACTACCCACCCATTGCTGGGCTGCTTAATGGTGTACACCAGGTCCTT--GGGCCCAGAGTAACCATCCATGCTCCTCAGAGCCTCTGTAGGGATGGGCACGGTGGCCCCCTCCCACATCTGGGGACACAGGCCTGTGAAGGTTCTGCCC------TGCCACACTTACCCACCCCTTCCTCCCCGGCCCTGGGCTGCCACCAGGGCTCCAACCCCACTGAGGCTCAGGCCCTCAGGTGGCATCAAGGCTGGCGCTGCTGTGGCTCCCCTGCACAAATGG-CCTCCC--TGCATTCACCTTCCCTGTC------------ACCCCAGGGAAGGCCACCCTCCAGGCCCAGCATCCCTGCTCTTCATCTGTCCTAGTCCTGTGTGTCCCTCAAGACCAGCTTGTGTAC-CCAACCCAGGAAGGCCCTAGCTCTTACCGTCACCAAGTTCTCACCCCCAGAAA-CCCCCAGCGCTGACCAACAGTGCTCCTTAATCTAGCTCACTGGTGGGGCAGCAGTCTCCTTTCAGACCCTCCATG---TGTGC---CTGGCAG-GGGCTGGGCACAG----GTGGGAACAGTGAT------------------TTTAGAAACGAGCACTCCTTCCAGCTAAGGGAGGGGTGGGAGGCGCAGAGAGCTGAAGCCTGATGGTTGGCACTGTCCTGCAGCACAGAAGCAGTGC-TGGGATGGGCCCAGGTGCTTCCAGAGCAGTTACGGGCCCTCCTCGTGTTGGGCA----------------------------------AAGGGGGCCCCTTTTCAGGCCTCCCACTAGCAAGCAGAACAGGCACCCGTTCCTGAGGTCCTGGTACCACTCTT--GCTGGGTCAATTACTTGTGGGCAGTGCTGCAGTGGGACTCACATGCCCAGAAAAC--AGCCCTCTGGCATTCCTGGGCTTCCTCCCCTGGCCGCAGGGAGCCCTCAGGCCGAGCCTTGGCAAGAGGGGC----CATACTGT-GGGAGGCAGGGCCCCATCA-CTGGGCTCCC-GGAACAAACACGGGTAGATGGCACCACCTGGTGGCCGCACTGCCACACAGCCATCCCAGCCT
s ponAbe2.chr15_random            9381179 1663 +  10928107 ACAGTGGCCACCTGAGGCTGGG--CGCATCTGAGTGG--------------GGCCCTTACCTCTCCCTGAGTGAAGTTCGCCAGGTCCTCCCCTGTGCTGTCATGCTGGGCGTGGAAGAGCCAGCCTAGCTGGGGGCCCCATACCACATGGTAAAGCAGGAGCTGGGGGTCAGTGCCT--------GCTCGCTCTGAGGCTCTGGCTGCTGAGTGGCTGGACGGACTCTGCCAGAGGCAAAAGGG-GCCATCAGCCTT----TGTGATCCAGGCCCAGGCT-TGTGGCTGCAGAG--GCAGTGTGACCCTGGCATGCCACCCTCAGCTCTGCCCCAGCCC-CCCG--CACCTAGGAACGCCCACAATCAGCACACCTACCTGGA----CAGTCAGTGTCCAGCTTCCCTCTAGCGAGTGAAGCACTTGCTTCTGGGCCGTCACTCAGAAGCTAAGTGTCTGGAGGAAGTATGTTCACCGTCAGAGAGGCCAAAGTGGATGCCTCCATCCAGGGCTCCTGGGGACAGG------GGT--ATTGGGTCCAGCTGGCCTGCGCTGGCTCCC-CACCTCAGGGTGCCCCTGC------AGGCAGCAGAAACCTGGGGCTAGGCCCTCAGCACCCACTTCTGTGTGAAAACAGCACGAGCCCACCATCCAGCTGGGCCCGCGTGAAGCTGTGCACCTCAGTGCCCGGCACCGCCCACAGCCCTACCCACCCATTGCTGGGCTGCTCAATGGTGTACACCAGGTCCTT--GGGCCCAGAGTAACCATCCATGCTCCTCGGAGCCTCTGTAGGGATGGGCACAGTGGCCCCCTCCCACATCTGGGGACACAGGCCTGTGAAGGTTCTGCCC------TGTCACACTTACCCACCCCTTCCTCCCCAGCCCTGGGCTGCCACCAGGGCTCCAACCCCACTGAGGCTCAGGCCCTCAGGTGGCATCAAGGCTGGCACTGCTCTGGCTCCCCTGCACAAATGGCCCTCCC--CGCATTCACCTTCCATGTC------------ACCCCAGGGAAGGCCACCCTCCAGGCCCAGCATCCCTGCTCTTCATCTGCCCTAGTCCTGTGTGTCCCTCAAGACCAGCTTGTGTAC-CCAAACCAGGAAGGCCCTAGCTTTTACCCTCACCAAGTTCTCACCCCCAGAAA-CCCCCAACGCTGACCAACAGTGCTCCTTAATCTGTCTCACTGGTGGGGCAGCAGTCTCCTTTCAGACCCTCCATG---TGTGC---CTGGCAA-GGGCTGGACACAG----GTGGGAACAGCGAT------------------TTTAGAAACGAGCACTCCTTCCAGCTGAGGGAGGGGTGGGAGGTGCAGAGAGCTGGGGCCTGATGGTTGGCACTGTCCTGCAGCACACAAGCAGTGC-TGGGATGGGCCCAGCTGCTTCCAGAGCAGTTATGGGCCCTCCTCGTGTTTGGCA----------------------------------AAGGGGACCCCTTTTCAGGCCTCCCACTAGCAAGCAGAGCAGGCACCTGTTCCTGAGGTCCTGGTACCAGTTTT--GCTGGGTCAATTACTTGTGGGCAGTGCTGCAGTGGGACTCACATGCCCAGAAAGC--AGCCCTCTGGCATTCCTGGGCTTCCTCCCCCGGCCGCAGGGAGCCCTCAGGCTGAGCCTTGGCAAAAGGGGC----CATACTGTGGGGAGGCAGGACCCCATCA-CTGGGCTCCT-GGAGCAAACACGGGTAGATGGCACCACCTGGTGGCCACGCTGCCACACAGCCATCCCAGCCT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95268550 1706 + 121039945 ACAGCGGCCACCTGAGGCTGGG--AGTGTCCGAGTGGTGGCTGCAAAGTTGGGCCCTTACCTCTGCCTGAGTGAAGTTCACCAGGGCCTTCCCTGTGCTGTCCTGCTGGGCGTGGAACAGCCGGCCTAGCTGGGGGCCCCGCACCACACGGTAGAGCAGGAGCTGGGGGTCGGTGCCTGCGCTGGAGCTGGCTCTGAGGGTCTGACTGCTGAGTGGCTGGACGGACCCTACCAGAGGCAAAAGGG-GCTATCATATTTTGACTGGGAGCCAGGCCCAGGCC-TGTGTTTGCAGAGAGGCAGCGTGACCCTGGCATGCCACCCTCAGCTCTGCCCCAGCTC-CCAG--CACCCAGGAATGCCCACGATCAGCACACCCACCTGGGCAGACAGTCAGTGTCCGGCTGCCCTCCAGCGAGAGGAGCACTTGCTTCTGGGCCATCACTCGGAAG--AAGTATCCAGAGGAAGTGTGCTCGCCGTCAGAGAGGCGGAAGCGGAAGCCTCCATCCAGGGTTCCTGGGGACAGG------GGC--ATTGGGTCCAGCTGGCCTGAGCTGGCTCCC-CATCTCAGGGCACCCCCAT------GGGCAGCAGGAACCCGGGGCCCAGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCTGCCGTCCAGCTAGGCCTGCGTGAAGCTGCGCACCTCGGTGCCCGGCGCCCCCAACAGCACTACCCGCCCGTTGCTGGGCTGCTCGATGGTGTAGACCAGATCCTC--GGACTCAGAGTCGCCGTCCATGCTCCTCAGAGCCTCCGCAGGGATGGGCGCAGTGGCCCCCTCCCACATCTGGGAACACAGGCCTGTGAAGGTCCTGCCT------TGCCACACTCACCCACCCCTTCCTCCCTGGCCCTGGGCTGCCACCAGGGCTCCAGTCCTGCTGCGGCTAAGGCCCTCAGGTGGCATCGAGGCTGGCGCCACTCTGGCTCCCCTGAACAAAGGG-CCCTCC--CGCATTCACCTTCCCTGTCACCCCAGGGAAGACCCCAGGGAAGGTCACCCTCCAGGCCCAGCCTCCCTGCTCTCCATCTGCCCTAGTCCTGCATGTCCCTCAAGGCCAGCTTATATCC-CCTACCCAGTAAAGCCCCAGCTCTTACCCTCACCAAGTTCTCACCCCCAGAAA-CCCCCAACGCTGACCAACAGTGCTCCTTAATCTGTCTCACTGGTGGGGGAGGGGTCTCCTTTCAGAGCCTCTGTG---TGTGC---TTGGCTG-GGGCTAGGCACAG----GTGGGAGTGGGGAT------------------TTTAGAAACAGGCCCTCCTTCCAGCTGAGGGAGGGGTGGGTGGTGCGGAGAGTGGGGTGCTGATGGTTGTCACTGTTCTGCAGAACAGAATCAGCA--TGGGATGGGCCCAGGTGCTTCCAGAGCAGTTACAGGCCCTCCTCATGTTGGGCA----------------------------------AAGGGGACCCCTTTTCAGGCCTCCCACTTGCAAGCAGAGCAGGTGCCTGTTCCTGAGGTCCTGGTACCAGTCTT--GCTGGGTCAATTACTTGCGGGCAGAGCTGCAGTGGGACTCACATGCTCGGAAAACAGAGCCTTCAGGCATTCCTGGGCTTCCTCCCCTGGCCCCAGGGAGCCCTCAGGCCCAGCCCTGGCAGGAGGGGC----CATAATGTTGCAGGGCAGGACCCCAGCACCTAGGCTTCT-GGAGCAAACACAGGTGGATGGCACCACCTGGTGGCTGTGCTGCCACACAGCCGTCCTGGCCT
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54036931 1698 + 170124641 ACAGTGGCCATTTGAGGCTGGG--GGTGTCTGAGTGGTGGCTGCAGAGTGGGGACCTTACCTCTGCCTGAATGAAGTTCACCAGTGCCTCCCCTGCGCTGTCCTGCTAGGCATGGAACAGCTGGCCTAGCTGGGGGCCCAGGACCACACTGTAGAGCAGGAGCTGGGGGTCAGTGCCTGTGCTGGAGCTGGCTCTGAGGCTCTGGCTGCTGAGTGGCTGGACGGACCCTTCCAGATGCAAAAGGG-GCCATCACCCTT----TGAGATCCAGGCCCAGGCC-TGTGTCTGCAGAGAGGCAGCGTGACCCTGGCGCACCACCCTCAGCTCTGCCCCAGCTC-CTGGCACACCCCGGAATGCCCACAATCAGCACATCCACCTGGGCAGACAGTCAGTGTCCAGCTGCCCTCTAGCGAGAGGAGCACTTGCTTCTGGGCCATCACTCGGAAG--AAGCGTCCAGAGGAAGTGTGCTTGTCGTCAGAGAAGCTGAAGTGGATGCCTCCATCCAGGGCTCCTGAGGAC--A------GTC--ATTGGGTCCGGCTGGCCTGAGCTGGCTCCT-CATCTCAGGGCACCCCTGC------AAGCAGCAGGAACCCAGGGCCCAGCCCTCAGCACCCACCACTGTGTGAGAACAGCACGAGCCTGCCGTCCAGCTGGGCCTGCGTGAAGCTGTGCACCTTGGTGCCCGGCGCTGCCCACAGCACTACCCGCCCTTTGCTGGGCTGCTCAGTGGTGTAAACCAGATGCTCAGGGGCCCAGAGTAACTGTCCATGCTCCTTAGGGCCTCCGCAGGGATGGGCGCAGTGGCCCCCTCCCACATCTGGGAACACAGGCCTGTGAAGGTTCTGCCT------TGCCCTGCTCACCCACCCCTTCCTCCCCGGCTCTGGGCTGCCACCAGGGTTCCAACTCTGCTGCGGCTCAGGCCCTCAGGTGGCATCGAGGCTGGCACTGCTCTGGCTCCCCTGCACAAAGGGCCCTCCC--CACATTCACCTTCCCTGTCACCCCAGGGAAGGCCCCAGGGAAGGTCACCCTCCAGGCCCAGCCTCCTTGCTCTCCATCTGCCCTAGTCCTGTGTGTCCCTCAAGGCCAGCTTGTGTCC-CCTACCCAGGAAGGCCCCAGTTCTTACCCTCACCAAGTTCTCACCCCCAGAAA-TCCCCAACGCTGACCAACAGTGCTCCTTAATCTGTCTCACTGGTGGGGCAGGGGTCTCCTTTCAGAGCCTCCGTG---TGTGC---CTGGCCA-GGGCTGGGCACAG----GTGGGAATGGTGAT------------------TTTAGAAACGGGCCCTCCCTCCGGCTGAGGGAGGGGTAGGTGGCACGGAGAGTGGGGGGCTGATGGGTGGTA-TGTTCTGCAGCACAGAATCAGCGC-CGCGATGGGCCCAGGTGCTTCCAGAGCAGTTACGGGCCCTCCTCATGTTGGGTG----------------------------------CAGGGGACCCTTTTTCAGGTCTCCCACTTGCAGGCAGCGCAGGCGCCTGTTCCTGAGGTCCTGGTACCAGTCTT--GGCGGGTCAATTACTTGCAGGCAGAGTTGCAGTGGGAGTCACATGCCCGGGAAACAGAGCCTTCTGGCATTCCTGGGCTCCCTGCCCCGGCCCCAGGGAGCCCTCAGGCTGAGCCTTGGCAGGAAGGGC----CATAATGT-GGGGAGCAGGGCCCCATTG-CAGGGCTCCC-GGAGCAAAAAC-----GATGGCACCACCTGGTGGCCGCGCTGCCACACAGCCGTCCTGGCCT
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50410687 1702 -  58131712 ACAGTGGCCATTTGAGGCTGGG--GGTGTCTGAGTGGTGGCTGCAGAGTGGGGACCTTACCTCTGCCTGAATGAAGTTCACCAGGGCCTCCCCTGTGCTGTCCTGCTAGGCGTGGAACAGCTGGCCTAGCTGGAGGCCCAGGACCACACCGTAgagcaggagctgggggtcggtgcctgcgctggagctggCTCTGAGGCTCTGGTTGCTGAGTGGCTGGACGGACCCTTCCAGATGCAAAAGGG-GCCATCATCCTC----TGAGATCCAGGCCCAGGCC-TGTGTCTGCAGAGAGGCAGTGTGACCCTGGCACACCACCCTCAGCTCTGCCCCAGCTC-CTGGCACACCCCGGAATGCCCACAATCAGCACACCCATCCGGGCAGACAGTCAGCGTCTGGCTGCCCTCCAGTGAGAGGAGCACTTGCTTCTGGGCCGCCACTCGGAAG--AAGTGTCTGGAGGAAGTGTGCTTGTCATCAGAGAAGCTGAAGTGGATGCCTCCGTCCAGGGCTCCTGAGGACAGA------GTC--ATTGGGTCTGGCTGGCCTGAGCTGGCTCCT-CATCTCAGGGCACCTCTTC------AGGCAGCAGGAACCCAGGGCCCGGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCTGCCGTCCAGCTGGGCCTGCACGAAGCTGTGCACCTCGGTGCCCGGCGCTGCCCACAGCACTATCCGCCCTTTGCTGGGCTGCTCAATGGCGTAAACCAGATGCTCAGGGGCCCAGAGTAACTGTCCATGCTCCTCAGGGCCTCCGCAGGGATGGGCGCAGTGGCCCCCTCCCACATCTGGGGACACAGGCCTGTGAAGGTTctgcct------tgccctgctcacccaccccttcctccccagccctgggctgccACCAGGGTTCCAACTCTGCT--GGCTCAGGCCCTCAGGTGGCATCGAGGCTGGTACTGCTCTGGCTCCCCTGCACAAAGGGCCCTCCC--CACATTCACCTTCCCTGTCACCCCAGGGAAGGCCCCAGGGAAGGTCACCCTCCAGGCCCAGCCTCCTTGCTCTCCATCTGCCCTAGTCCTGCGTGTCCCTCAAGGCCAGCTTGTGTCC-CCTACCCAGGAAGGCCCCTGTTCTTACCCTCACCAAGTTCTCAGCCCCAGAAA-CCCCCAACGCCGACCAACAGTGCTCCTTAATCTGTCTCACTGGTGGGGCAGGGGTCTCCTTTCAGAGCCTCCGTG---TGTGC---CTGGCCA-GGGCCGGGCACAG----GTGGGAATGGTGAT------------------TTTAGAAACGGGCCCTCCTTCCAGCTGAGGGAGGGGT-GGTGGTGCGGAGAGTGGGGGGCTGATGGTTGGCA-TGTTCTGCAGCACAGAATCAGCGC-TGCGATGGGCCCAGGTGCTTCCAGAGCAGTTACGGGCCCTCCTCATGTTGGGCG----------------------------------AAGGGGACCCCTTTTCAGGCCTCCCACTTGCAAGCAGAGCAGGCGCCTGTTCCTGAGGTCCTGGTACCAGTCTT--GCTGGGTCAATTACTTGCAGGCAGAGTTGCAGTGGGACTCACATGCCCGGGAAACAGAGCTTTCTGGCATTCCTGGACTCCCTCCCCCGGCCCCAGGGAGCCCTCAGGCTGAGCCTTGGCAGGAGGGGC----CATAATGT-GGGGAGCAGGGCCCCATCG-CAGGGCTCCC-GGAGCAAACATGGGTGGATGGCACCACCTGGTGGCCGTGCTGCCACACAGCCGTCCTGGCCT
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67702032 1519 - 124595110 ---GCAGCCACCTGAGGTAAGGTTGGGGTCTGTGTGGTGGCTGAGGAGTGAGGCCCTTACCTCAGCCTGGGTGAAGTTCACCAAGACCTCCTCTGCACTTCCTTGCTGGGCATGGAGGAGTCGGCCAAGCTGGGGGCCTCTTACCACCCGGTAGAGCAGGTGACGAGGGTCAGCGCCTGTGCTGGAACTGGCGCTCAGGCTCTGGCTGCTGAGCGGCTGCACAGACTCTGTGAAGCATGGAGGAG-CCTGTTAGCTTT----TGACAG--GAGCCCAGACA-AG--------------------GGTCCTGGGCTACCATCCTCCATTCTGCCTCGGCTAGCCAG--CAT-------------------GCAGACCTACCTGGACAGACGGTCAACTTCCGGGTGCCCTCCAAGGAGAGGAGTGCCTGCTTCTGGGCCACCACTCGGAAG--AAATGTCCAGGAGAAGTGTGTGCGCCGTCAGAGAGGTCGAAGTGGAAGCCTCCTTCCAGGGCTCCTGAGCACAGGGTGGGTGGA--GCTGGGTCCTGTTGGCCCAAGGTAGCTCCCTCCCCTCAAGGTACCCCCACCCCAGGAGGCTGGAGAACCCT-----------CTCAGCACCCACCTCTGTGTGAGAACAGCACAAGCCCACTGTCCAGCTGGGCCTGTGTGAAGCGGTGGACCTCGGTGTCTGGTGCCACCCTCAAGGCGATCCGTCCGTTGCTGGGCTGCTCGATGGTGTAGACCAAGTCTTC--TGGGCCCGAATCATTGTCTGTTCCCCTGAGGGCCTCAGGAGGGATGGGCACAATGGCCCCCTCCCAGATCTAGGGACACAGACC-GTGAAAGTCCTGTCCACATTGTGTC---CTTTCCATCCCTTTCCTCCTGGCCCTTGGACTTTCACCAGGCCCCCAACCT-------GCTCTG---CCCGGCTGTCATGGACACCTGTGCCATTCTGAGCCTTCT---------------TT--CTCATTCTCCTTTTCTGTC------------------------------------ACGCAGGTTCCT---TCTCCACCAGCCCTGATCTTAATTGTACCTCAAAGCCAGACCACAACCTCCTGCCTAGAAATGTTCCTGTTT------------GGTCCTTA-CTTCAGAGA-TCCCTGTCCCTGACCAAAGGTGCTGCCGG----GTCTCCCTGGTGGGGGGGCCTTCCCTTTCC--TCCTGCCATGGCATATACCATCTGGCGC-GGG-TGGGCACAGGACAGAGGCAATGGTGTTGGCCA---GCGCAGAACACTTAGAAATAGGCTCTCCTGCCAGTTGAAGCTCGGGAGGGAGG--CGGAGAGCGGAGAGCTGATTCCTGATT-----------------------------------CCTAGCTG------AATCGGCTAGGAATCCACC-CGTGCAGTGCA----------------------------------GGGGAGGCCCCAT---AGGCTACCCACC--CACGCAGGGCAAGGTCTTCTTCCAGA-GCCCTGTTCCATGTGGC--ACAGGGCCAGTCAC-TGAGGCCATTCTGGGTACGAGGCCCTCAT-CTCAGAAAAC--GTCCTTCTAAAACCCAGGAGCTGCTTCTCCC--TCCCAG---------AGTCCGAGAGTAAGTTAAAA------------------------------CCAGTG-TTGGACTCCAGGGGGCTAACATGGGTGGATATTGCCACCTAGTGGCCAATTTACCACACATCATTTCCAACTT
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38471082 1603 +  40214260 ACAGTGGCT-CCCAGGACGCAG--GGAGTCT-AGTGGCGGCTGTAGAGGTGGGGCCCTACCTCGGCTTGCGTGAAGTTCACCAGGACCTCCCCGGTGCCGCCCTGCTGGGCGCGGAGCAGGCGGCCCAGCCGGGGGCCCTGCACCACCCGGTAGAGCAGGTGCTGCGGATCGGTGCCGGCACTGGAGCTGGCTCTCAGGCTCTGGCTGCTGAGCGGCTGGACCGACCCTGCGAGACACATCAGGGCCCCGCTGGCCTCGGACCAGGAGGCAGGGCGAGGCCGTGCGCCTGCGGGG--GCAGCGTGAC-----------------------GGGCCGGGCC-CCGG--GCCCACGAGGCAAGCGCGCCGGGCGGACCCACCTGGGCACACGGTCAGCGTCCGGCTGCCCTCCAGGGAGAGGAGCAGCTGCTTCTGGGCCGTCACGCGGAAG--AAGTGTCCGGGGGAAGCGTGCTCGCCGTCGGACAGGCTGAAGCGGAAGCCTCCGTCCAGGGCTCCTGAGGACGGG------CGTAGAGTGGGTCTCGCTGGCCCCCGCGGG-TCCC-CGTCCGCAGGCGCCCCAGC------CGG-------------------------CGGTACCCACCTCTGTGTGAGAACAGCACGAGCCCGTCGTCCAGCTGGGCCTGCGTGAAGCTGTGCACCTCGGTGCCTGGCGCCGCCCGCAGCACCACCTGCCCGTTGCTGGGCCGCTCGATGGTGTAGACCAGGTCCTC--CGGGCCCGAGTCGCTGTCCGCACCCCTCAGGGCCTCCGGAGGGAAGGGCACGGTGGCCCCCTCCCACATCTGGGGACACAGGCCCGTGAGGGTTCCGTCC----------------------------CCGCCGAGCGGAGCACTCCCACT--GGCTC------------AGCTCAGGCCTTGGGCGGTCACCGAGGCCCGCGTCCTCCTGGGCTCCCCCTCCCAAGGGCCCCTCCAGCCCAGTGACCTTCCCCTGC----------------------------CACCCCGGGCCCAGGCTCCCTTCTCTCC----GCCCTGATCCTGCTTGTCCTGCGAGGCCAGC-----------------------CCCCCGCTCTT-CCCTCACCAGGCTCTCCCCGCCGCAGAGCCCCCAGCCCCGACCCGCGGCAGCACCGCGACCGTCTGGC--------------CCTGCCTCCTGGGC----ACG---TGGGT---CTGGGGACGGGCTGGGCACACT---ACGGGAATGGTGAGGGTCGCGTCCCCAAGACGCTGATAAACACACTCCCTTTCCAGGTGAGGGAAGGACGGGAGGCTCGGGGTGGGAAAGGCTGATGCTTGGCCCCTGTCCGTGGCCTGGAAGCAGCACGTGACGAAGGCTCGTGTGTTTCCAGCGTGGTCACGAGGCCCACCCAGGTCAGGGAGGGGTGCGGGCAGCCCCACCCCAGGCTCAGAGGGAAGAGGAGTCCCTGTCGGGCCTCCCACCTGCCAGCAGGGCAGGATCCCGTTTCTGGGATCCTGTTACATGGCCCCAGCTGGGTCAGGACCTTG--GGCTGCCTTAGGGAGGGGCTCCCAGCCCCGGAAAACCGAGCCCTCTGGGATCCCAGGG--ACCTTCTCAGTCCCAGGCTAACCCCCGGG--GAGCCCTGGAAGGGGGAGCACGGTGCGGTGCGCAGAGATGGGGCTTCAGCG-CGGGGCCTGC----GCAAACGCTGA-GGACAGCATCACCTGGTGGCCAAGGGGCCACACAGCAGCACCGGCCT
i canFam3.chr30                 I 4 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642    0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137    0 -    187897 C

a score=92028.000000
s hg38.chr15_KI270850v1_alt         99704 106 +    430880 GTGGTTCCAG--GGTGCTGTG------TCCCACTCTTCTGTGGCGTCCGCACCATGAGGCCACCCCCTACAGGCACATCCTAGACCACCAAAGCCCCCC---------------GGTGCCCCATGTCAG
s ponAbe2.chr15_random            9382842 106 +  10928107 GTGGTTCCAG--GGTGCTGTG------TCCCACTCTTCTGTAGCCTCTGCACCGTGAGGCCGCCCCCTACAGGCACATCCTAGACCACCAAAGCCCCCC---------------GGTGCCCCATGTCAG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95270256 121 + 121039945 GTGGTTCCAG--AGCACTGTG------TCCCACTTTTCTGTGGCTTCCGCACCACCAGGCCGCCCCCTACGGGCACATCCTAGACCACCAAGGCCCCCCCCAACCGCCGCCCCAGGCACCCCATGTCAG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54038629 108 + 170124641 GTGGTTCCAG--AGCACTGTG------TTCCACTCTCCTGTGACCTCCGCACCATGAGGCCACCCCCTATGGGCACATCCTAGACCACCAAAGCCCTCCTC-------------AGCGCCCCATGTCAA
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50412389 108 -  58131712 GTGGTTCCAG--AGCACTGTG------TTAAGCTCTCCTGTGACCTCCGCACCATGAGGCCACCCCCTATGGGCACATCCTAGACCACCAAAGCCCCACTC-------------AGCGCCCCATGTCAG
i chlSab2.chr26                 C 0 C 0
s canFam3.chr30                  38472685 111 +  40214260 GTGGTTCCGGGCAGCCCCGAGCCGCACCCCCGCTGCTCTGCGGCCGCCCCACCCCTGGACCACTCCCCACAGCCACAGCCTCTGCCATCAAAGGCGTCC---------------GGTGTCC---ATCAG
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67703551   0 - 124595110 C
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=29221.000000
s hg38.chr15_KI270850v1_alt         99810 36 +    430880 AGACAGCCCAAGTCAGCCCTCTTGCGGAACCTTCAG
s ponAbe2.chr15_random            9382948 36 +  10928107 AGACAGCCCAAGTCAGCCCTCTTGTGGAACCTTCAG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95270377 36 + 121039945 AGACAGCCCAAGTCAGCCCTCTTATGGAAACTTCAG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54038737 36 + 170124641 AGACAGCCCAAGTCAACTCTCCTGTGGAACCTTCAG
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50412497 36 -  58131712 AGACAGCCCAAGTCAGCTCTCCTGTGGAACCTTCAG
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67703551 29 - 124595110 AGGCATCCC---TTAGTTATCTAG----ACCCTCAG
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38472796 24 +  40214260 GCCCTGCCC--GTCCACCATCTCGTG----------
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=38589.000000
s hg38.chr15_KI270850v1_alt         99846 62 +    430880 TGGCTTCTGCTGACTGGGGAGGACGCGCCCCAGAAGCTGGGGTTCAAAGCCCTGCCACGTGG
s ponAbe2.chr15_random            9382984 62 +  10928107 TGGCTCCTGCGGACTGGGGAGGACGCACCCCAGAAGCTGGTGTTCAAAGCCCTGCCATGTGG
i ponAbe2.chr15_random          C 0 I 10
s nomLeu3.chr6                   95270413 62 + 121039945 TGGCTCCTGCTGACCGGGGAGGACGCACCCCAGAAGCTAGTGTTCAAAGCCCTGCCATGTGG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54038773 62 + 170124641 TGACTCTCGCTGACCGCAGAGGATGCACCCCAGAAGCCGGCATTCAAAGCCCTGCCATGTGG
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50412533 62 -  58131712 TGACTCTTGCTGACCCAGGAGGACGCACCCCAGAAGCCGGCATTCAAAGCCCTGCCATGTGG
i chlSab2.chr26                 C 0 C 0
s canFam3.chr30                  38472820  3 +  40214260 ----------TGA-------------------------------------------------
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67703580  0 - 124595110 C
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=3386.000000
s hg38.chr15_KI270850v1_alt         99908 5 +    430880 GCTTA
s nomLeu3.chr6                   95270475 5 + 121039945 GCTTA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54038835 5 + 170124641 GCTTA
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50412595 5 -  58131712 GCTTA
i chlSab2.chr26                 C 0 C 0
s canFam3.chr30                  38472823 5 +  40214260 TCTTG
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67703580 0 - 124595110 C
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e ponAbe2.chr15_random            9383046 10 +  10928107 I
e panTro4.chr15_GL392289_random    176137 0 -    187897 C

a score=64425.000000
s hg38.chr15_KI270850v1_alt         99913 60 +    430880 GTAAAGCCATGCCCTTTCTgttccaccagaactacttttgcaatcatggagaagttccat
s ponAbe2.chr15_random            9383056 60 +  10928107 GTAAAGCCACGCCCTTTCTgttccaccagaactacttttgcaatcatggagaagtttcat
i ponAbe2.chr15_random          I 10 C 0
s nomLeu3.chr6                   95270480 60 + 121039945 GTAAAGCCATGCCCtttctgttctaccacaactacttttgcaaccatggagaagttctat
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54038840 60 + 170124641 GTGAAGCCATGCCCTTTCTGTTCTACCAGAACTACTTTCACAAGCATGGAGAAGTTCCAC
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50412600 60 -  58131712 GTGAAGCCATGCCCTTTCTGTTCTACCAGAACTACTTTCACAAGCATGGAGAAGTTCCAC
i chlSab2.chr26                 C 0 C 0
s canFam3.chr30                  38472828 60 +  40214260 GCCACGCCGTGCCCTTTCTGTTCCCCCGtaactacttctgtgaccgtggagaaatgctgt
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67703580  0 - 124595110 C
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=772893.000000
s hg38.chr15_KI270850v1_alt         99973 756 +    430880 cccatctctgggcctcaacttccacctttgccaaatgggggccctg-ctctgcT--------GTGG----ACAAGGG----------------------------------------GCAGGAGTTTGGGAAGCCAAGCTGAGGCCTCCACTTGCTG-GGGTGAAGGTGGGAAGCTTAACGG-TCCCACCCTGACGCCAGCCCTTAAGGGCTTGTAAGTGATTCTTTCAGGTGTTCTGGTCCTAAGCCACAGGAGAAG------------------------GAACAG-------CAGAGCCACCCATGGCTGCTCAGAAGTCTGCCTACCGTACTTGCAAATGTCCAAT-AACAAAACCTCCCACCTGTGTTCTA-TTTCAgcacaatctcacatctctccttccaacaactgcgtgaggcacacagtagtgtcctcattttgcagaggaggaaactgaggctca------gagtgggggagATCTGTGCCGGGAAGTAGGGGACATTGGCCTCTTTCTCAAAGCAGACATGGGG---GGTGGTCCCAGGAATATGCTCACCTGCAGGCCTGAGTTTGTA-TGAGGTC----GGGGGTTGGCCATTGACAGGCAGGATGGTGACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCATCTCAGAGGCATTAGCCATCAGGACAAAA----CCGTCAGTGTCTTGCTCCCATCGTGCAGGTACTGGATCAGATGCTCTTCCACCTAGGGGCAGGCCCAGGGCTGGCAGTCAGGCCCCAG-------------------------------CAGTACCCTTCATGTTCTGCCTTTGGGTGCAGGAAGAGactgacccttttagggcctcagcttccattggtggaaaatgggga-c
s ponAbe2.chr15_random            9383116 742 +  10928107 cccatgtccgggcctcaacttccacctctgcaaaatgggggccctg-ctctgcT--------GTGG----ACAAGGG----------------------------------------GCAGGAGTTTGGGGAGCCAAGCTGAGGCCTTCACTTGCTG-GAGTGAAGGTGGGAAGCTTAATGG-TCCCACCCTGACGCCTGCCCTTAAGGGCTTGTAAGTGATTCTGGCAGGTGTTCCGGTCCTAAGCCACAGGAGAAG------------------------GGACAG-------CAGAGCCACCCGTGGCTGCTCAGAAATCTGCCTACCGCACTTGCAAATGTCCAGT-AACAAAACCTCCCACCTGTGTTCTA-TTTCAgcaccatctcacatctctccttccaacaactgcgtgaggcacacagtagtgtcctcattttgcaga----------------------------gggggagaTCTGTGCGGGGAAGTAGGGGACACTGGCCTCTTTCTCAAAGCAGCTATGGGGGGTGGTGGTCCTAGGAATATGCTCACCTGCAGGCCTGACTTTGTA-TGAGGTCGGTGGGGGGTTGGCCAGTGACAGGCAGGATGCTGACAGTGAAAGCCACAGGATAGCTCTGGCGGTCCATCTCAGAGGCACTAGCCATCAGGACAAAA----CTGTCAGTGTCTCGCTCCCGTCGTGCACGTACTGGATCAGCTGCTCTTCCACCTAGGGGCAGGCCCAGGGCTGGCAGTCAGGCCCCAG-------------------------------CAGCACCCTTCACGTTCtgcctttgggtgcaggaagagactgacccttttagggcctcagcttccattcgtggaaaatggggacc
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95270540 805 + 121039945 cccatgtctgggcctcaacttccacc--tgcagagtggggCCCTTACCTCTGCCTGAGTGAAGTTC----ACCAGGGCCTCCCCTGCACTGTCCTGCTGGGCATGTAACAGTCTTGTGCAGGAGTTTGGGGACCCAAGCCGTAGCATTCACTTGCTG-G-GTGAAGGTGGGAAACTTAACAGCTTCTGCCCTGATGCCTGCCCTTAAAGGCTTGTAAGTGATTCTGTCAGGTGTTCTGGTCCTGAGCCACAGAAGAAG------------------------GAAC------------AGCCACCCGTGGCCGCTCAGAAGTCTGCCTACCATACTTGGAAACGTCCAATAAAAAAAACCTCCCACCTGTGTTCTA-TTTCAgcacaatctcacatctctccttccaacaaccccgtgaggcatgtggcagtgtccccattttgcagaggaggaaactgaggatca------gagagggggagCTCTGTGCTGGGAACTAGGGGACGCTGGCCTCTTTCTCGAAGCAGACATGGGG---GGTGGTCCCAGGGATGCTCTCACCTGCAGGCCTGTGTTTGTAGTGAGGAT---GGGGGGTTGGTCATTGACAGGCAGGACAGTAACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCATCTCGGAGGCGTTAGCCATCAGGACAAAACTGTCTGTCAGTGTCTCACTCCCGTCATGCATGTAGCGGATCAGCTGCTCTTCCACCTAGAGGCAGGCCCAGGGCTGGCAGTCAGGCCCCAG-------------------------------CAGCACCCTTCGTGTCCTGCCTTTGGGTGCAGGAGGAGactgactcttttagggcttcattttccattggtggaaaatgggga-c
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54038900 756 + 170124641 CCCATGTCTGGGCCCTGGGTTCC-----TGCCAAATGGGGGCCCTG-CTCTGCT--------GTGGC---ACAAGGG----------------------------------------GCAGGAGTTTGGGGAGCCAAGCCGTGGCCTTCACTTGCTG-GGGTGAAGGTGGGAAGCTTAGTGGCTCCTGCCCTGACACCTGCCCTTACGGGCTTGTAAGTGATTCTGTCAGGAGTTCTGGTCCTGAGCCACAGGAGAAG------------------------GAACAG-------CAGAGCCACCCATGGCCGCTCAGAAGTCTGCCTAACTTACCTGCAAGCGTCCAAT-AACAAAACCTCCCACCTGTGTTCTG-TTTCAgcacaatctcacaactctccttccaacaaccccgtgaggcatgcggcagcgtccccattttgcagaggaggaaactgaggctca------gacaggGGGAGCTCTGTGCTGGGAAGTAGGGGACGCTGGCCTCTTTCTCGAAGCAGACATGGGG---GATGGTGCCGGGAATACTCTCACCTGCAGGCCTGTGTTTGTAGTGAGGAC---GGGGGGTTGGTCATTGACAGGCAGGATGGTGACAGTGAAGACCACAGGATGGCTCTGGCAGCCCATCTCGGAGGCGTTAGCCATCAGGACAAAACTGTCTGTCAGTGTCTCGCTCCTGTCGTGCACGTAGCGGATCAGCTGCTCTTCCACCTACGGGCAGGCCCAGGGCT---AGTCAGGCCCCAG-------------------------------CAGCACCCTTCATGTCCTGCCTTTGGGTGCAGGAGGAGGctgactcttttagggcttcagcttccattggtggaaaatgggga-c
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50412660 755 -  58131712 CCCATGTCTGGGCCCTGGGTTCC-----TGCCAAACGGGGGCCCTG-CTCTGCT--------GTGGC---ACAAGGG----------------------------------------GCAGGAGTTTGGGGAGCCAAGCCGTGGCCTTCACTTGCTG-GGGTGAAGGTGGGAAGCTTATTGGCTCCTGCCCTGACACCTGCCCTTACAGGCTTGTAAGTGATTCTGTCGGGAGTTCTGGTCCTGAGCCACAGGAGAAG------------------------GAACAG-------CAGAGCCACCTGTGGCTGCTCAGAAGTCTGCCTACCTTACTTGCAAGTGTCC-at-aacaaaacctcccacctgtgttcca-tttcagcacaatctcacaactctccttccaacaaccccatgaggcatgcggcagcgtccccattttgcataggaggaaactgaggctca------gacagggggagCTCTGTGCTGGGAAGTAGGGGATGCTGGCCTCTTTCTTGAAGCAGACATGGGG---GATGGTGCCAGGAATACTCTCACCTGCAGGCCTGTGTTTGTAGTGAGGAC---GGGGGGTTGGTCATTGACACGCAGGACGGTGACAGTGAAGGCCACAGTATGGCTCTGGCAGCCCATCTCGGAGGTGTCAGTCATCAGGACAAAACTGTCTGTCAGTGTCTCGCTCCCGTCGTGCACGTAGCGGATCAGCTGCTCTTCCACCTATGGGCAGGCCCAGGGCT---AGTCAGGCCCCAG-------------------------------CAGCACCCTTCATGTCCTGCCTTTGGGTGCAGGAGGAGactgactcttttagggcttcagcttccattggtggaaaatgggga-c
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67703580 687 - 124595110 ---------------------------------------------------------------------------------------------------------------------CCTATATATAGGGAAGCTTCGTTGTGATCTTTATTTGCTG-T-----------GACCCTCGA--GCTCCCAACCTGCAGCCCACAATACAGGACTTATAATACATTTCTTTAGGTATTTTGGGCCTGAGACATGAGGGAAAACC--------------TTTCTGTGAACAGGTGGGTCCAAGGACAGGCAAGGTC-----AAGGATGGTCTTTCTAAACCAAGACTGCCCAGT-AACAAAACCTCACAACTGCGTTTTGTTTTCAGCACTGTAtcacatctctccttccaa------------gtttgtggtagtgaacccatttcacagaggatgacactgag--cca------gagag----------------------aagggactCTAGTCTCTTTCTGGGACCAGAGATGG-----GATAGGTTCAGGAGTGAACTCACTTGCAGGCCTGTGTTTGTGGTGAGAAC---AGGGGGTTGGTCATTAACAGGAAGGATGGTGATCGTGAAGGCCACGGGCTGGCTCTGGCGGTCCATCTCTGAGGCATTAGCTAGCAGAACAAAGGCGTCTGTCTGTGTCTCACTTCCATCATGCACGTAGCGGATCAGCTGCTCTTCCACCTATGAGGAGACCCAGGATTGGTTGTCAGGCTTCAGCTAGCCCAAGACTCAACAGGGATCTTGGGACCAGCACCCTTAACGTCCCATTGTTAGGTACAG---GAGACAGATCCCTTTAGAACAC--ATTTCCACAGGTAAGAAGTGTGTA-T
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38472888 793 +  40214260 gaccgggctgggcctcagctttggcttctgctgagtgacggCGCCA-CCATTCT--------GGGGCGATGTGAGGG----------------------------------------GCAGGGGCTCGGGAAGCCAAGCTGTGGCCCTCCCTTGCTGTGGGTGGAAGCGGGGAGCTTAACCACGCTCCACCTGG-ATCCGCCCTTTAGGGCCTGAAAGAACTTTCTTCAGGAGGTCTGGTCCGGAGCCACAGAAAACGCCTGCAGCTGAGGGTGAGTCCAGGGAAGGG-------CAGGGCCAAGGATGGCCATTCGCGAGACTGCCTGCCGCACTTCTAAGTGTTCAAC-AACCAAGTCTCACACCTGTGCCCTACTTTCAGTGCCATAGCTCTTCCCCACCACCTA---------GAGGCATGTGGCACGGTCCACACTT---AGAGAAAGCGAC--GGGCTCATGGGTGGGGGCGGGGAGCTCTGTGCTG----------------GGCCTCTCTTTGGGCG-GGAGGTGGGA---GGTGATCCCAGG-CTGCTCTCACCGTTAGGCCTGTGTTTGCGGTGAGGAT---GGGCGGTTGGTCATTGACGGGCAGGACGGTGATGGTGAAGGCCACAGGGTGGCTCTGGCGGTCCAGCTCGGAGGCGTTAGCCACTAGGGTGAAGCTGTCTGTCAGCGTCTCACTCCCGTCGTGCACATAGCGGATCTGCTGCTGTTCTACCTGTGGGCAGGCCCGAGGCTGAAGGCCAGGCCCTGGCAGGCCTGAGGGCGGCGCGGGCTCCACCC--CGGCACCCCTCGTGCTCTGCCTCTGGGTGTGGGA-GGGACGGGCTCCCTCCGCGCTTCCATTCCCGCAGGTGG-AGACGGGGA-C
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=27706.000000
s hg38.chr15_KI270850v1_alt        100729 39 +    430880 cataagttctggttcccagaggagttgtgaggaagaaag
s ponAbe2.chr15_random            9383858 39 +  10928107 cataagttctggctcccagaggagttgagaggaagaaag
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95271345 37 + 121039945 cataagttctggctcc--gaggagttgtaaggaagaaag
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54039656 39 + 170124641 cataagttctggctcccagaggagctgtgaggaagaaag
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50413415 39 -  58131712 cataagttctggctcccagaggagctgtgaggaagaaag
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67704267 26 - 124595110 Gtggagagatggctc-------agtggttaaga------
i mm10.chr9                     C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38473681  0 +  40214260 C
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=1345.000000
s hg38.chr15_KI270850v1_alt        100768  6 +    430880 ggga----ta
s ponAbe2.chr15_random            9383897 10 +  10928107 gggatattta
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54039695  6 + 170124641 gaga----ta
i rheMac3.chr7                  C 0 I 51
s chlSab2.chr26                  50413454  6 -  58131712 gaga----ta
i chlSab2.chr26                 C 0 I 3952
e mm10.chr9                      67704293  0 - 124595110 C
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38473681  0 +  40214260 C
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e nomLeu3.chr6                   95271382  0 + 121039945 C
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=6026.000000
s hg38.chr15_KI270850v1_alt        100774 78 +    430880 ttttattttattttgagacagagtctctcgctctg-ttgcccaggctggagtgcagtggtgtgatctcggctcactgca
s ponAbe2.chr15_random            9383907 78 +  10928107 ttttattttattttgagacagagtctctcgctctg-ttgcccaggctggagtgcagtggtttgatctcggctcactgca
i ponAbe2.chr15_random          C 0 C 0
s mm10.chr9                      67704293 43 - 124595110 -----------------------------gcactgactgctcttccagaggtcc-------tgagttcaattccctgca
i mm10.chr9                     C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38473681  0 +  40214260 C
e chlSab2.chr26                  50413460 3952 -  58131712 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54039701 51 + 170124641 I
e nomLeu3.chr6                   95271382  0 + 121039945 C
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=2015.000000
s hg38.chr15_KI270850v1_alt        100852 5 +    430880 acctc
s ponAbe2.chr15_random            9383985 5 +  10928107 acctc
i ponAbe2.chr15_random          C 0 C 0
s mm10.chr9                      67704336 5 - 124595110 accac
i mm10.chr9                     C 0 I 223
s canFam3.chr30                  38473681 5 +  40214260 ACCCC
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50413460 3952 -  58131712 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54039701 51 + 170124641 I
e nomLeu3.chr6                   95271382 0 + 121039945 C
e panTro4.chr15_GL392289_random    176137 0 -    187897 C

a score=12777.000000
s hg38.chr15_KI270850v1_alt        100857 215 +    430880 tgcctcccagattcaagcgattctcctgcctcagcctcctgagtagctgggactacaggtgcgggccaccacacccggctaattttttgtatttttagtagaaacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcctgatctgcccacctcggcctcccaaagtcctggaattacaggcatgagccacagcgcccagccc
s ponAbe2.chr15_random            9383990 215 +  10928107 tgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagccgtgactacaggtgcgggccaccatacctggctaattttttgtatttttagtagaaacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccacccaccttggcctcccaaagtcctggaattacaagcgtgagccacagcgcccagcct
i ponAbe2.chr15_random          C 0 C 0
s canFam3.chr30                  38473686  80 +  40214260 CTCCTCCCAGGCTGAA----------------------------------------------GGGCCGC---------------------------AGGAGGAACGG-------------------GAATGGGGCTGTCCTCC-----------------------GACTGCCCGGAG------------GGGAAGGAACGGCAGCA--------
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67704341 223 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50413460 3952 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54039701  51 + 170124641 I
e nomLeu3.chr6                   95271382   0 + 121039945 C
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=18494.000000
s hg38.chr15_KI270850v1_alt        101072 75 +    430880 gagatacagcatctaaagcATAGGTCTTTCTGAAATGTGACTCCCTGTCTCCTCTC--TGTATAACCCCTGGACTGG
s ponAbe2.chr15_random            9384205 75 +  10928107 --gacacagcatttaaagcataggtcctTCTGAAATGTGACTCCCTGTCTCCTCTCTGTGTATAACCCGTGGACTGG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95271382 77 + 121039945 gagatacagtatttaaagcATAGGTGCTTCTGAAATGTGACTCCCCGTCTCCTCTCTGTGTATAACCCCCAGACTGG
i nomLeu3.chr6                  C 0 C 0
s canFam3.chr30                  38473766 69 +  40214260 -------GGCACCCAGAGCAGAGGCCTCCCCGACCGCGACCTCCCTGCTTCCTCTGGGTGGACGCCCCCAGCCGTA-
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67704341 223 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50413460 3952 -  58131712 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54039701 51 + 170124641 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=36113.000000
s hg38.chr15_KI270850v1_alt        101147 66 +    430880 GAGTCCCCGGGGCTCCCTCCACTCTGCCCCCAGAGCTGGGCTGCAGCCCCTGGGCCTCTCTCACAG
s ponAbe2.chr15_random            9384280 66 +  10928107 GAGTCCCCAGGGCTCCCTCCACTCTGCCCCCAGAGCTGGGCTGCAGCCCCTGGGCCTCTCTCATAG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95271459 66 + 121039945 AAGTCCCCAGGGCTCCCTCCACTCTGCCCCCAGAGCTGGACTGCAGCCCCTGGGCCTCTCTCACAG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54039752 66 + 170124641 GAGTCCCCAGGGCTCCCTCCATTCTGCCCCCAGAGCTGGGCTGCAGTCCCTGGGCCTCTCTCACAG
i rheMac3.chr7                  I 51 C 0
s canFam3.chr30                  38473835 41 +  40214260 GAGCCCCCAG-----CTGCCCCCCGGCCCCCAGCG---------AGTCCCGAGAG-----------
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67704341 223 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50413460 3952 -  58131712 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137  0 -    187897 C

a score=162596.000000
s hg38.chr15_KI270850v1_alt        101213 168 +    430880 CCGTACCTCTCTCCAGCAGAAGGTGCTGAGGGTCCTGGCTTGAGGCCCATCCTCCTTCTGCAGGGCCCCATGCCGGGGTGGCTCCAGCACCTGCAGGCCAAGGCCCGGGAGAGTGGGGAAGCAGGACCTGGCAACGCGGAGCAGTGGAGGGGCCAGGGTGCAGCTGCG
s ponAbe2.chr15_random            9384346 168 +  10928107 CCATACCTCTCTCCAGCAGAAGGTGCTGAGGGTCCTGGCTTGAGGCCCATCCTCCTTCTGCAGGGCCCCATGCCGGGGTGGCTCCAGCACCTGCAGGCCAGCGCCCGGGAGAGTGGGGAAGTAGGACCTGGCAACGCGGAGCAGTGGAGGGGCCAGGGTGCAGCTGCC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95271525 168 + 121039945 CCATACCTCTCTCCAGGAGAAGGCGCTGAGGGTCTTGGCTTGAGGTCCATCCTCCTTCTGCAGGGCTCCATGCTGGGGTGGCTCCAGCACCTGCAGGCTGAGGCCCGGGAGAGTGGGGAAGTAGGGCCCGGTGACGCGGAGCAGTGGAGGGGCCAGGGTGAGGCTGCC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54039818 158 + 170124641 CTGTACCTCTCTCCAGGAGAAGGCGCTGAGGGTCCTGGCTTGAGGTCCGTCCTCCTTCTGCAGGGCCCCATGCCAGGGTGGCTCCAGCACCTGCAGGCTGAGGCCTGGGAGACTGGGGAAGTAGGGCCCGGTGACACGGAGCAGTGGAGGGG---GGGTCA-------
i rheMac3.chr7                  C 0 C 0
s mm10.chr9                      67704564 167 - 124595110 CGGTACCTCTCTCCAGGAGAAGGTGCTGAGGCTCCCATCTTGAGAATGATCCTCCTTCTGCAGGGCCCCGTGCTGCGGTGGCTCTAGCACCTGCAGGACAAGGCCTGGCAGCGTGGGGAAGTAAGGCCCAGTGATCTGGACCAGAGGAGGGGCCAGCGTCCGGGTGC-
i mm10.chr9                     I 223 C 0
s canFam3.chr30                  38473876 167 +  40214260 CAGTACCTCTTTCCAGGAGAAAGCGCTGAGGGTCCCCGCTTGAGGGGCCTCCTCTCTCCGCAGGGCCCCGTGCAGGGGCTGCTCGAGGACCCGCAGTTCGAGGCCGGGCAGTGCAGGGAAGTAGGGCCCGGCGACCTGGAGCAGCGGGGGGGCCAGCACGCGGCTGC-
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50413460 3952 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e panTro4.chr15_GL392289_random    176137   0 -    187897 C

a score=543650.000000
s hg38.chr15_KI270850v1_alt        101381 410 +    430880 ACTGTGCCCCCTCTACTGCTGAAGTTTTGTGCCCCCAGTGGGGATGACAGCAGGCAGCACCTCCAGCTCCAC-GT-GACGTCCTCAAGGGGAGCACCCAGGCC-GAGGCCACATCCAGCGAGAAGGCATG--------CCTCAGGGCGGGAGTGCAGGTAGAGGATCCTGCCTGTGTCCACTGCCTCTTGGGAGAAGCTCTGCACGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGATGCCACGCAGCACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAAAACGATGTCTGCTGGCGGCACTGCCTCCTGGGCTACCTGGTTAACAGA-GGTCATGAGGACTCACAAGGGAATGCAGA-GG-GGTCTCAGAGGGGCCCACTGTGGCCCTAAGCAGCCAGAACAGCCTTGATC
s panTro4.chr15_GL392289_random    176137 418 -    187897 ACTGTGCCCCCTCTACTGCTGAAGTTTTGTGCCCCCAGTGGGGATGACAGCAGGCAGCACCTCCAGCTCCAC-GT-GACGTCCTCAAGGGGAGCACCCAGGCC-GAGGCCACATCCAGCAAGAAGGCATGGCTTCAGGCCTCAGGGCGGGAGTGCAGGTAGAGGATCCTGCCTGTGTCCACTGCCTCTTGGGAGAAGCTCTGCACGGGGTCTAGGCTGGGTGGCTCATCTGCCAAGATGCCACGCAGCACCATCACCAGGTAGCCGGCACTCAGTGGGCTCTTCACTGAGAAAACAATGTCTGCTGGCGGCACTGCCTCCTGGGCTACCTGGTTAACAGA-GGTCATGAGGACTCACAAGGGAATGCAGA-GG-AGTCTCAGAGGGGCCCACTGTGGCCCTAAGCAGCCAGAACAGCCTTGATC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9384514 418 +  10928107 ACCATGCCCCCTCTACTGCTGAAGTTTTGTGCCCCCAGTGGGGATGACAGCAGGCAGCACCTCCAGTTCCAT-GC-GATGTCCTCGAGGGGAGCACCCAGGCA-GAGGCCACATCCAGTGAGAAGGCATGGCTCCAGGCCTCAGGGCGGGAGTGCAGGTATAGGATCCTGCCTGTGTCCACCGCCTCTTGGGAGAAGCTCTGCACGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGATGCCACGCGACACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAAAACGATGTCTGCTGGCGGCACTGCCTCCTGGGCTACCTGGTTAACAGA-GGTCATGAGGACTCACAAGGGAATGCAGT-GG-AGTCTCAGAGGGGCCTACTGTAGCCCTAAGCAGGCAGAACAGCCTTGATC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95271693 415 + 121039945 -----ACCCTCAGGGACGCTGAAGTTTTGCGCCTCCAGT-GGGATGGCAGCGGGCAGCACCTCCAGCTCCACAAG-GACGCCCTCGAGGGGAGCACCCAGGCCTGAGGCCACATCCAGCGAGAAGGCATCACTCCAGGCCTCAGGGCGGGAGTGTAGGTACAGGACCCTGCCTGTGTCCACTGCCTCCTGGGAGAAGCTCTGCACGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGGCACCACGCGACACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAATACAATGTCTGCCGGCGGCACTGCCTCCTGGGCTGCCTGGTTAACAGA-GGTCATGAGGACTCACAGGGGGCCACAGATGG-GGTCTCAGAGGGGTCCACTGTGGCCCTAAGCAGCCAGAACAGGCTTGATC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54039976 390 + 170124641 ------------------CTGAAGTTTTGCATCTCCAGT-GGGATGGCAGCAGGCAGCACCTCTAGCTCCAC-GCGGACACCCTTGAGGGGAGCACCCAGGCCCAAGGGCACATCCAGTGAGAAGGCATCGCTCCAGGCCTCAGGGCGGGAGTGCAGGTACAGGACCCTGCCCACATCCACTGCCTCCTGGGAGAAGCTCTGCACGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGATGCCACGAGACACCATCACCACGCAGCTGGCACTCGGTGGACTCTTCACTGAGAATATGATGTCTGCCGGCGGCACTGCCTCCTGGGCTGCCTGGTTAACAGA-GGTCATGAGGACTCACAGGGGGCCACAGA-GGCAGTCTCTGAGGG------------TCTAAGCAGCCAGAACAGACTTGATC
i rheMac3.chr7                  C 0 C 0
s mm10.chr9                      67704731 397 - 124595110 ----CGCCCTCGGGAACGCTGAAGTTTTGAACATCCAGG-GGGATGACTGTGGGCAGCACCTCCAGCTCCACAGA-GATGCCTTCAAGAGGATCACCCAGGCCCGAGGCCACATCCAGGGAGAAGGAATCACTCCAGGCTCCAGGGCGAGAGTGCAGGTAGAGAACCCGGCCTGAATTCACTGCCTCCTGGGAGAAGCTCTGCACAGGGTCCAGGCTGGGCGGCTCCTCTGCTGAAGCGCCGTGGGACACCATCACCAGGTAGCCGGCGTTCGGGGGGCTTCTCAACGAGAACATGATGTCGGCAGGCAGCACTGCCTCCTGGACCACCTAGTCAACAGA-GACGATGGGGACAAAC--------------GG-GGTCACAGG-----CTGTTGTGGACCTCAGGTGGCAGAACAGGCTCGGTC
i mm10.chr9                     C 0 I 537
s canFam3.chr30                  38474043 385 +  40214260 ----CGCCCTCGGGGACGCTGAAGTTCTGTGCCTCCAGT-GGGATGGTGGCGGGCAGCACCTCCAGCTCCAC-GCGGACGCCCTCGAGGGGCGCACCCAGGCCTGAGCCCACGTCTAGGGAGAAGGAGTCACTCCAGGCCTCGGGGCGGGAGTGGAGGTACAGGACCCTGCCGGCGTCCACCGCCTCCTGGGAGAAGCTCTGCACGGGGTCCCAGCTGGGCGGCCCGGCCACGGAGGCGCCGCGGGACAGCATCACCAGGTAGCCGGCCCGCGGCGGGGTCTTCACCGAGAACACAATTTGGGCGGGCGGCACTGCCTCCTGCGCTGCCTGCGTGACACAGGGTCATGGAGG-------------------GA-GGCCGCCGG-------------CCCCCAAGCGGCCAGAGCAGGCTCAGCG
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50413460 3952 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=101204.000000
s hg38.chr15_KI270850v1_alt        101791 147 +    430880 TTGCTCCACTTATTTCCCCAGATACCACTGCTCATTTAGTGACAC--ACACACATGTGGGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttgtttttttgagacagggtctcactctgtcacccaggctggagtgct
s panTro4.chr15_GL392289_random    176555 145 -    187897 TTGCTCCACTTATTTCCCCAGATACCACTGCTCATTTAGTGACAC--ACACA--TGTGGGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttgtttttttgagatagggtctcactctgtcacccaggctggagtgct
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9384932 149 +  10928107 TTGCTCCACTTATTTCCCCAGATACCACTGCTCATTTAGTGACACAAACACACATGTGGGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttgtgtttttgagacagggtctcactctctcacccaggctggagtgct
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95272108 148 + 121039945 TTGCCCCACTTATTCCTCTAGGTGCCACTGCTCATTTAGACACACAAACACACACGTGGGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttgt-tttttaagacagggtctcactgtgtcacccaggctggagtgca
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54040366 144 + 170124641 TTGCCCCACTTATTCTTCCAGATACCACTGCTCATTTACACACACAAACACACATGTGGGTTCACACACACAGCAGCTAGACATGCAGCTGGTCACAttttttgt-tttttgaca----gtctcactctgtcacccaggctggagtaca
i rheMac3.chr7                  C 0 C 0
s canFam3.chr30                  38474428  64 +  40214260 CCGTGCCCCCCAGCCCCC------------------------------CGCCCAGGAGGGCC--------------CCGGACACCC--CTG------------------------------CTCACTCAGACACCCAGAC---------
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67705128 537 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50413460 3952 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=555745.000000
s hg38.chr15_KI270850v1_alt        101938 531 +    430880 gtggtgtgatcacagctccctgcagcctcaacgtcctaggctcaaggg----------ctcagcctcccaagtagctggggaccacagtcatgtgccaccatgcctggctaatttttaaatgttttgtgtagagatggggtttcac----------------------tgggttgcccca----gctggtcACATGTTAATACCCACCCCACACATGGTTACGGGGTGTCGGTCA-ACAGCTTGAGATGCACTCCCTCAGGGAGGTGCATAATCACATGTCCCCAGACTCAGTGACACAGACATATGAGTTCATCAGATGCTGACGCAG--TCACACAGGTACAGGTACACATGCGTGTGTG--------------------CACACGCACACA-------GGCCCCCTGCTCAGGATCTGTTCAGGCCTGTGGCTGGTTTGCTGGCAGCATCCTCCCCAACCCCTGCTATTACCACCCAGGACCATCAGAGGGTGCCCTGCCCCACCCCACCCC-ACCCCTCCTAGAGGCACAGGCACCCCCAGCACAGGCCCTACAGAGCTCACACCCCAAAGGCCACATGGGCT-CCCTCACCTGA
s panTro4.chr15_GL392289_random    176700 533 -    187897 gtggtgtgatcacagctccctgcagcctcaacctcctaggctcaaggg----------ctcagcctcccaagtagctggg-accacagtcatgtgccaccatgcctggctaatttttaaattttttgtgtagagatggggtttcac----------------------tgggttgcccca----gctggtcACATGTTAATACCCACCCCACACATGGTTACGGGGTGTCGGTCACACAGCTTGAGATGCACTCCCTCAGGGAAGTGCATAATCACATGTCCCCAGACTCAGTGACACAGACATATGAGTTCATCAGATGCTGATGCAG--TCACACAGGTACAGGTACACATGCGTGTGTG--------------------CACACGCACACA--CA---GGCCCCCTGCTCAGGATCTGTTCAGGCCTGTGGCTGGTTTGCTGGCAGCATCCTCCCCAACCCCTGCTATTACCACCCAGGACCATCAGAGGGTGCCCTGCCCCACCCCACCCC-ACCCCTCCTAGAGGCACAGGCACCCCCAGCACAGGCCCTACAGAGCTCACACCCCAAAGGCCACATGGGCT-CCCTCACCTGA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9385081 520 +  10928107 gtggtatgatcacagctccctgcagcctcaacctcctaggctcaacgg----------ctcagcctcccaagtagctggg-accacaggcatgtgccaccatgcctggctaatttttaaattttttgtgtagacatggggtttcac----------------------tgggttgccccg-gctgCTGGTCACATGTTAATACCCACCCCACACATGGTTACAGGGCATCGGTCACACAGCTTGAGATGCACTCCCTCAGGGAGGTGCATAATCACATGTCCCCAGACTCAGTGACACAGACATATGAGTTCATCAGATGCTGATGCAG--TCAC------ACATGTACACATGCACATGTG--------------------CACATGCACACA--CA---GGCCCCCTG-TCAGGATCTGTTCAGGCCTGTGGCTGGTTTGCTGACAGCATCCTCCCCAACCCCTGCTATTATCACCCAGGACCATCAGAGGGTG----------CCCCGCCCC-ACCCCTCCTAGAGGCACAGGCACTCCCAGCACAGGCCCTACAGAGCTCACGCCCCAAAGGCCACATAGGctcccctcacctga
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95272256 528 + 121039945 gtggtgcgatcacagttccctgaagcctcaacttcccaggctcaagggatcctcccacctcagcctcccaagtagctgtg-atcacaggcatgtgccaccatgcccggctaatttttaaattttttgtgtagagatggggtttcac----------------------tgggttgccccg-gctgCTGGTCACATGTTAATACCCACCCCACACACGGTTGCAGGGGGTCAGTC--ACAGCTTGAGATGCACTCCCTCGGGGAGGTGCGTAATCACATATCCCCAGACTCAGTGACACAGACACATGAGTTCATCATATGCTGACGCAG--TCAC------ACATGTACACATGCGCGTGTG--------------------CACACGCACACACACA---GGCCCCCTGCTCAGGATCTGTTCAGGCCTGTGGCTGG-TTGCAGGTAGCA-CCTCCCCAGCCCATGCTATTACCACCCAGGACCATCAGAGGGCG----------CCCCGCCCC-ACCCCTCCTGGAGGCACAGCCGCCTTCAGCTCAGGCCCTACAGAGCTCACGCCCCAAAGGCCACACGGGct-ccctcacctga
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54040510 564 + 170124641 gtggtgtgatcacagttccctgaagcctcaacctcccagactcgagggatcctcccacctcagcctcccaagtagctgtg-accacaggcacgtgccatcatgaccagctaa-ttttaaattttttgtgtagagatggggtttcactggtttgccccggctgCTGGTTTGGGTTGCCCCTGGCTGCTGGTCACATGTTAATACCCACCCTACACACGGTTACAGGGGGTCAGGCACACAGCTTGAGATCCACCCCCCCGGGGAGGTGCATAATAACATATCCCCAGACTCAGTGACACAGACACACAAGTTCATCATACGCTGACGCAG--TCAC------ACATGTACATATgcgcgtgtgcgcgtgcacgtgcgcgcgcgcacgcgcACACA--CA-----------GCTGAAGATCTGCTCAGGTCTGTGGCTGGTTTGCAGGCAGTG-CCTCCCCAGCCCCTGTTATTACCATCCAGGACCATCAGAGGGCG----------CCCTGCCCCACCCCCTCCTGGAGGCACAGCCACCTTCAGCCCAGGCCCTATGGAGCTCATGCCCCAAAGGCCACATGGGct-tcctcacctga
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50417412 553 -  58131712 gtggtgcaatcacggctctctgcagcctcaacctcccaggctcaagggatcctcccacctcagccttccaagtagctgtg-accacaggcacatgcttccatgcccagctaa-ttttaaattttttgtgtagagatggggtttcac----------------------tgggttgccgctggctgCTGGTCACATGTTAATACCCACCCCAAACACGGTTACAGAGGATCAGTCACACAGCTTGAGATGCACTCCCCCGGGGAGGTGGATAATCACATATCCCCAGACTCAGTGACACAGACACGCAAGTTCATCATACGCTGATGCAG--TCAC------ACATGTACATATgcgcgcgcgcgcgcgcgcacacacacacacacacacacaca--cacaGGCCCCCCTGCTCAGGATCTGTTCAGGTCTGTGGCTGGTTTGCAGGCAGTG-CCTCCCCAGCCCCTGTTATTACCACCCAGGACTGTCAGAGGGCG----------CCCTGCCCCCACCCCTCCTGGAGGCACAGCCCCCTTCAGCCCAGGCCCTATGGAGCTCAAGCCCCAAAGGCCACATGGGCT-CCCTCACCTGA
i chlSab2.chr26                 I 3952 C 0
s canFam3.chr30                  38474492 300 +  40214260 --------------------------------------------------------------------------------------------------------------------------------ATGCAGCCGG-------C----------------------TGGGCCTCCCCA-CCCGCTGCTCACTCGT---------------------------------------GCA----------CACTCCCCAAGAGGTGTACGCGGTCACA--CCTCCAGACTCGGTGACTCAGATGCACAATTTCTCTACACACTGATGTGGATCCAC------ACACGTAGGCCT-CACGGGTG-----------------------TCGCACCCT--GT---ACCCGCCCGCTC-------GCCCATgcccgcgg------------------gccgcccggcctccgcgggggccACTGCTCACCACCAGAGGGCG----------CTCCGTCCC------TTCGGGAGGCAGA----CTCCGCACACAGGGCCT--GGGGC-----CCGCGAGGACCGC-CGCGC--CCCCCACCTGA
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67705128 537 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=1871954.000000
s hg38.chr15_KI270850v1_alt        102469 1250 +    430880 TGGGCCATCCACAAGAGGCTAAACTGC-CTccaaactcacattcctg-ttttgtgccttcggccggaatgttccttttgcgtggaataccactccccattctctgctcctaatggcctgtactcttcagagcccggcccaaacactgcctcctcccatg--agg--ccttcctgatgccagatctgctggctcaccatgggccccAAGCTCCAG--ATGCAG-A-CCAGAAGGGTCTCCGAAATA----AGCAGTGTGGAAGAGTAAGGCTGAGAGCGGGCAAGGACTGGCCTGAGGTCACAGGGCATGTC-----------AGATCTCTGGAAGGCCCGTGGCTGCTCTGTGGGGTTCCTGGGTGAGCAGAAGCCCTTGACAGACCCTCCTGGTCCTGGTCTGGGCTCTGAGAAGAGAGCGGGGTACACAGGGGTCTGAGAGGCAGCGGCCTGTCTCCACGGCCAGCAATCCCAAAAGTTCAGGACCCGTGATGCCCTCccagggaac----tgactgcaatgcagattctcgggctccacttcagagattctgtagggctgggtggcgtccaggaatctgCATGCTCAGCCATGCCATGGACATGAGTGGACACCAGCTCTAGAGGCACAC-ACCACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAACACAACATATATGGGAGCACATCTGAGGCACGTGCACACACACAAGCTGGGA-CCACCACAGGTACAGCCCAAGT-CACATGTGTTCCCGGCATGGAGGCTGGGAGGAAGG---CCCTCTACCTGGTCCACA--CCCCGCTCACCACCTCCAGCTCCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGATGTAGATCTCCTTGTGCTGGGCCAGCTTCAGTGGGGCTACTGGGCCCTCTAGGGCAATGGTCACTTGTAGGGTGGCATCTGTGTGCACTGGTCCCACATCCATTGAGAAGGCCAGGGTGTTGCGGGAGCTGAGGCTGCCATTGTGGCCATAGAAAACAGCCCCAACCAGCAGGTCCTGCTGAGAGAAGGCTGTGGCTGGCTGAGTGGCTTGGAGCAACTGTCCCCAGTGAGGGCTGTCTGTGACGTGGTAGTGGGCCTCATCCCTACTGCAGATGTTGAGGTTGGTGCCCAGGTGGAGCTCGGCCATGTTGATGGTACCCTGGCCTCCTTGAGGAACCATGAGGCCGGAGCCATTGGCCACACAGAGGTAAGGCTCCAAGGCCTGCACCTCCAGCA
s panTro4.chr15_GL392289_random    177233 1243 -    187897 TGGGCCATCCACAAGAGGCTAAACTGC-CTCCAAACTCACATTCCTG-TTTTGTGCCTTCGGCTGGAATGTTCCTTTTG----GAATACCACTCCCCATTCTCTGCTCCTAATGGCCTGTACTCTTCAGAGCCCGGCCCAAACACTGCCTCCTCCCATG--AGG--CCTTCCTGATGCCAGATCTGCTGGCTCACCATGGGCCCCAAGCTCCAG--ATGCAG-A-CCAGAAGGGTCTCCGAAATA----AGCAGTGTGGAAGAGTAAGGCTGAGAGCGGGCAAGGACTGGCCTGAGGTCACAGGGCATGTC-----------AGATCTCTGGAAGGCCCGTGGCTGCTCTGTGGGGTTCCTGGGTAAGCAAAAGCCCTTGGCAGACCCTCCTGGTCCTGGTCTGGGCTCTGAGAAGAGAGCAGGCTACACAGGGGTCTGAGAGGCAGCGGTCTGTCTCCACGGCCAGCAATCCCAAAAGTTCAGGACCTGTGATGCCCTCccagggaac----tgactgcaatgcagattctcgggctccacttcagagattctgtagggctgggtggcgtccaggaatctgCATGCTCAGCCATGCCATGGACATGAGTGGACACCAGCTCTAGAGGCACAC-ACAACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAACACAACATATATGGGAGCACATCTGAGGCACGTGCACACACGCAACCTGGGA-CCACCACAGGTACAGCCTAAGT-CACATGTGTTCCCGGCATGGAGGCTGGGAGGAAGG---CCCTCTACCTGGTCCACA--CCCCGCTCACCACCTCCAGCTCCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGATGTAGATTTTCTTGTGCTGGGCCAGCTTCAGTGGGGCTACTGGGCCCTCTAGGGCAATGGTCACTTGTAGGGTGGCATCTGTGTG---TGGTCCCACATCCATTGAGAAGGCCAGGGTGTTGCGGGAGCTGAGGCTGCCATTGTGGCCATAGAGAACAGCCCCAACCAGCAGGTCCTGCTGAGAGAAGGCTGTGGCTGGCTGAGTGGCTTGGAGCAACTGTCCCCAGTGAGGGCTGTCTGTGACATGGTAGTGGGCCTCATCCCTACTGCAGATGTTGAGGTTGGTGCCCAGGTGGAGCTCGGCCATGTTGATGGTACCCTGGCCTCCTTGAGGAACCATGAGGCCGGAGCCATTGGCCACACAGAGGTAAGGCTCCAAGGCCTGCACCTCCAGCA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9385601 1235 +  10928107 tgggccatccacaagaggctaaactgc-ccccaaactcacattcctg-ttctgtgcctttgcccggaatgttccttttgcctggaataccactccccattctctgctcccgatggcctgtgctcttcaga-----gcccaaacgctgcctcctcccgtg--agg--ccttcctgatgccagatctgctggctcaccgtgggccccAAGCTCCAGACATGCGG-A-CCAGAAGGGTCTCCGAAATG----AGCAGTGTGGGAGAGTAAGGCTGAGAGCGGGCAAGGACTGGCCTGAGGTCACAGGACATGTC-------AGTGAGATTTCTGGAAGGTCCGGGGCTGCTCTGTGGGGTTCCTGGGTGAGCAGAAGCCCTTGACAGACCCTCCTAGTCCTGGTCTGGGCTCTGAGAAGAGAGCGGGGTACACAGGGGTCTGAGGGGCAGCGGCCGGTCTCCATGGCCAGCAATCCCAGAAGTTCAGGACCCGTGATGCCCTCCCAGCAAAC----TGACTGCaatgcagattctcaggctccacttcagaaattctgtagggctgggtggggtccaggaatctgcatGCTCAGCCATGCCATGGACACAAGTGGACACCAGCTCTAGAGGCACAC-ACAACTCCCAGGAGGATGGATGTACAGCAAGCTCCCCAGAAACTCT-----------------TGGGAGCACATCTGAGGCACCTGCACACACGCAACCTGGGA-CCACCAAAGGCACAGCCCAAGT-CACATGTGTTCCCAGCAGGGAGACTGGGAGGAAGG---CCCTCTACCTGGTCCACA-CCCCCACTCACCACCCCCAGCTCCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGATGTAGATCTTCTTGTGCCAGGCCAGCTTCAGTGGGGCTAGTGGGCCCTCTAGGGCAACGGTCACTTGTAGGGTGGCATCTGTGTGCACTGGCCCCACATCCATTGAGAAGGCCAGGGTGTTGCAGGAGTTGAGGCCGCCATTGTGGCCACAGAGAATGGCCCCAACCAGCAGGTCCTACTGGGAGAAGGCTGTGGCTGGCTGAGTGGCCTGGAGCAACTGTCCCCAGCGAGGGCTGTCTGTGACGTGGTAGTGGACCTCATCCCCACTGCGGATGTCGAGGTTGGTGCCCAGGTGGAGCTCGGCCGTGTTGATGGTACCCTGGCCTCCTTGAGGGACCATGAGGCCGGAGCCATTGGCCACACAGAGGTAAGGCTCCAAGGCCTGCACCTCCAGCA
i ponAbe2.chr15_random          C 0 I 825
s nomLeu3.chr6                   95272784 1240 + 121039945 tgggccagccacaagaggccaaaccgc-ccccaaactcacattcctt-ttctatgcatttgcctggaatgctccttctgcctggaataccactccccattctctgcccctgatggcctgtgctctttagagcccagcccaaacgctgcctcctcccgcg--agg--ccttcctgactccAGATCTGCCAGCTCGCTGTCGGCCCCAAGCTCCAGACATGCAG-A-CCAGAAAGGTCTCCGAAATG----AGCAGTGTaggagagtaaggccgagagcgggcaaggactggcctgaggtcacagggcaagtc-------agtgAGCCTGCTGGAGGGCCCGTGGCTGCTCTGTGGGGTTCCTGGGTGGGCAGAAGCC-----------------ACCCAGGTCTGGGCTCTGAGAAAAGAGCGGGGGACATGAGGGTCTGAGGAGCAGCTGCCTGTCTCCAGGGCcagcaatccccaaagctcaggacccgtgatgccctcccagggaac----tgactgcaatgcagattctcgggctccatgtcagagattctgtagggctgggtggggtccaggaatctgcatGCTCAGCCACGTCATGGACACGAGTGGACACAACCTCTGGAGGCACAC-ACAACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAGCACAACATATACAGGAGAATATTTGAGGCACGTGCACACATGTAACCTGGGG-CCACCACAGCCACAGCCCAAGT-CACACGTGTACCTGGCATGGAAGCTGGGAGGAAGG---CCCTCTACCTGGCCCAca-cccccactcaccacctccagctcctcacctccacctGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGACATAGATCTTCTTCTGCCGGACCAGCTTCAGAGGGGCCAGTGGGCCCTCTAGGGCAATGGTCACTTGTAGGGCGGCATCCATGTGCACTGGCCCCATTTCCACGGAGAAGGGCAGGGTGTCATTGGGGCTGGGGCTTTCATTGTGGCTATGGAGAACGGCCCCATCCAGCAGGTCCTGCTGGGAGAAGGCTGTGGCTGGCTGACTGGCCCGGAGTAGCTGTCCCCAGCGAGGGCCGGCTGTGACGTGGTAGTGGATCTCATCCCCACTGCGGATGTCGAGGTTGGTGTCCAGGTGGAGCACGGCCGTGTCGATGGCGCCCTGGCCTCCTTGAGGGACCACAAGGCTGGAGCCGTTGGCCACACGGAGGTAGGGCTCCGAGGCCTGCACCTCCAGCA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54041074 1250 + 170124641 tgggccagtcgcaagaggctaaaccac-ccccaaactcacattcctg-ttctatgcctttccc-agaatgttcctcctgcctggaataccactccccattctctgctcccaatggcctgtgctcttcagagcccggcccaaacactgcctcctcccatg--agg--ccttcctgatgccagatctgctggcttgccgtgggccccAAGCTCCAGACATGCAG-A-CCAGAAGGGTCCCCGAAATGAGCTAGTAGTGTGGGAGAGTAAGGCT--CAGCGGGCAAGGACTGGCCTGAGGTCACAGGGCAAGTCCTGCTGGAGTGAGCCTGCTGGAGGACCCGTGGCTGCTCTGTGGGGTTCCTGGGTGGGTAGAAGCCCTTGACAGACCCTCCTAGTCCTGGTCTGGGCTCTGAGAAAATAGCGGGGAACATGTGGATCTGAAGAGCAGCCACCTGTCTCCATGGCCAGCAATCCCCAAAGTTCAGGACCCGTGATGCCCTCCCAGGAAAC----TGACTGCaatgcagattcttgggctccacttcagagattcagtagggcttggtggggcccgggaatctgcatGCTCAGCCACACCTTGGACACGAGTGGACACGAACTCTGGAGGCACAC-ACAACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAGCACAACATATACGGGAGCACATCTGAGACCTGTGCACACATGCAA-CTGGGA-CCACCACAGCCACAGCCGAAGT-CACATGTGTACCTGGCATGGAAGCTGGGCCGGAGG---CCCTCTACCTGGCCCACA-CCACCGCTCACCACCTCCAG--------------CTGGTCCCTTCTGATCTCAGCTCCCTCTCCCTGGAAGACATAGATCTTCTTGTGCCGGACCAGCTTCAGTGGGGCCAGTGGGCCCTCTAGGGCAATGGTCACTTGTAGCGTGGGATCCGTGTGCACTGGCCCCACTTCCATTGAGAAGATCAGGGTGTCACGGGTTCTGAGTCTGCCATTGAGGCCGTAGAGAATGGCCCCGTCTAGCAGGTCCTCCTGGGAGAAGGCTGTGGCTGGCTGAGTGGCCCAGAGCAACTGCCCCCAGAGAGGGCCGGCTGTGACATGGTAGTGCACCTCATCCCCACTGCAGATGTCAAGGTTGGTGTCCAGGTGGGGCTCAGCTGTGTCAATGGTGCCCTGACCTCCTTGAGGGACCACAAGGCCAGAGCCGTTGGCCACAAGGAGGTAGGGCTCCGAGGCCTGCACCTTCAGCA
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50417965 1247 -  58131712 TGGGCCAATCACAAGAGGCTAAACCAC-CCTcaaactcacattcctg-ttctatgcctttccctggaatgttcctcctgcctggaataccactccccattttctgctaccgatggcctgtgctcttcagagcctggcccaaacactgcctccttccgca--agg--ccttcctgatgccAGATCTGCTGGCTCACTGTCGGCCCCAAGCTCCAGACATGCAG-A-CCAGAAGGATCTCCGAAATA----AGTAGTGTGGGAGAGTAAGGCT--GAGCGGGCAAGGACTGGCCTGAGGTCACAGGGCAAGTCCTGCTGGAGTGAGCCTGCTGGAGGGCCCGTGGCTGCTCGGCGGGGTTCCTGGGTGGGTAGAAGCCCTTGACAGACCCTCCTAGTCCTGGTCTGGGCTCTGAGAAAATAGCAGGGAATATGTGGATCTAAAGAGCAGCCACCTGTCTCCATGGCCAGCAATCCCCAAAGTTCAGGACCCATGATGCCCTCCCAGGAAAC----TGACTGCaacgcagattcttgggctccacttcagagattcagtagggcttggtggggcccaggaatctgcatGCTCAGCCACGCCATGGACATGAGTGGACACGACCTCTGGAGGCACAC-ACAACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAGCACAACATATACGGGAGCACATCTGAGACCCCTGCACACATGCAA-CTGGGA-CCACCACAGCCACAGCCCAAGT-CACATGTGTACCTGGCATGGAGGCTGAGGGGGAGG---CCCTCTACCTGGCCCACA-CCCCCGCTCACCACCTCCAG--------------CTGGCCCCTTCTGATCTGAGCTGCCTCTCCCTGGAAGACATAGATCTTCTTGTGCCGGACCAGCTTCAGTGGGGCCAGTGGGCCCTCTAGGGCAACGGTCACTTGTAGCGTGGCATCCGTGTGCACAGGCCCCATTTCCATTGAGAAGATCAGGGTGTCACGGGTTCTGAGGCTGCCATTGAGGCGGTAGAGAATGGCCCCGTCTAGCAGGTCCTCCTGGGAGAAGGCTGTGACTGACTGAGTGGCCCAGAGCAACTGCCCCCAGCGACGGCCGGCTGTGACATGGTAGTGCACCTCATCCCCACTGCGGATGTCAAGGTTGGTGTCCAGGTGGAGCTCAGCTGTGTCAATGGTGCCCTGACCTCCTTGAGGGACCACAAGGCCAGAGCCGTTGGCCACACGGAGGTAGGGCTCCGAGGCCTGCACCTCCAGCA
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67705665 1099 - 124595110 tggaactctcttaatagaccaggttgg-ccttgaattcaaa-----g-agctctgcctgcctctg-------cctcctgagtg-------------------ctgggattaaaggtgtgcac-caccaaagcttggttCATATGCTGCCTCCTCTGGTG--TGGACACTTCCTGACA-------TGTTTAGTCATGGTCTTTCTCAAAGTCCAAACACTCAGAA-CTGGAAGGGCCTCAAAACTG-------------------------------------------GGCCT----TCACAG--TAAGGC-------AGTGAGCCAGCTGGTCAGC-----ATTGCGCTGTGAGCTCCCTGAGTTAACAGACACCATC-ACAGGCCCTCACAGTTCTGTTGTGGAGTCTAGGGAAAGAGCTAAGGACCTGTGGATCTGAGGGGCAGCG---------------------CTCCTAAAGGTCACCCCTCATGGTAACCTCATAGGGACTG---TGACAG-GATATACACTCTTGGTCTCTGCTTCAGAGATTCTGTGGATCTGGCTGGAACCCA-GATTTTACACGGCTATCCATAGCAAGGACACATGTATATGTGATCTCTGGAGGTGCGTGACACTTAACAGGTAGGTGTATG----------TTCCTAGACACATGCAGAACTACAACACATACAGGTG-ACTACTGAAGCTGTAATACTCCTAAGACCTGCAT-CC-CCACAGGAAC-----------------GCCCCCCTCATGGAAGT----------A---CCCTCAGCTTGG--CAGG--CCTCGTGCACTGCCTT---------ACCTCTAGCTGGTCCCTTCTGATCTCAGCCGCTTCCCCCTGGAAGACGTAGATCTTTTTGTGCTGCACCAGTTGCAGTGGGGCCAGGGGACCCTCGAGGGCAATGGTCACTTGTAGGAAGGTGTTAGTGTGTACTGGCCCTGCTGCCACAGAAAACGCCAGGGTGTCTTGGGGGCTGAGGCTGCCATTGTGGCTGTAGAGGATGGCCCCATCGAGCAAGTCCCGTTGGGAGAAGGAGGTGACTGACTGGCCATCCCGGAGCAGCTGCCCCCACTGAGGACCAGCGGTTACATGGTAGTGGACCTCATTTCCACTTCGTATGTCCAGGTTGGTGTCCAGCTGGAGCACAGCAGTGTCAATGGTGCCCTGGCCTCCTTGAGGAACCACGAGACTAGAACTATTGGCTACGTGAAGATAGGGTTCTGAGGCTTGGACCTCCAGCA
i mm10.chr9                     I 537 C 0
s canFam3.chr30                  38474792 1030 +  40214260 TGGCCCGGCTGCAGGAGGCCACACACCACCCCCAGCTCACATCCCTGATCCTGTGCCTCTGCCTGGAGGGGTGTCCTT-----------------TCATCCCCTGCTACTGAAACCCCAGACTCTGCAAAGCCGGACTCCAGTGCCGCCTCCGTCAAGGCCAAG--CCTTTCTGATGCCAGACAGGGCCAGCCACCGTCTGCCCCAAA-TCCAGGCAGCTGG-ACCCACCAGGGGCTCAGAAATC----GGCCGTGTG---------------------------------------CCAC----CGAGTC-------AGTAGGCC--------------TGGTTGCTCTCTGA--TTCCTGGATGGTCAGCGGCTCTC---------------CCCAGGTC----------------------------------CTGAGGCCCGG-----------------------TCCTCAAGGT-----GCCCAGGAGAATCCCCCAGGGAACGAATTTATTAGAAAACAGATTCTCCGA-----------------------------------------------------ATCCGTAGCACGCACATGTGTGCACCTGACAGGTGGAGGCCCCC-ATAACTCTGAGG---------------CAAACTCCCCGGAGACCGT-----------------CAGGCACATCCCCAAAGCGCGGACAC-CACCCAACCCAGGAGTCCCCACCGGTACCCCCCAAACGTCCACGCACACAGGGCGTGAAGGCTGGATGGAAGGGGCCCCCTTCTCTGGCCTATGACTTCCACTCGC--CCCTCGGCCTTTTACCTCCAGCTGATCCTTTCTGATCTCAGCTGCCTCCCCCTGGAAGACGTAGATCTTCTTGTTCTGGACCAGATGCAGTGGGGCCAATGGCCCCTCCAAGGCAATGGTCACCTGCAGGGTGGCATCCGTGAGCACAGGCCCTGCCTCCACGGAGAAGGCCAGGGTGTCCTGCGGGCTCAGGCTGCCGTTGTGGCTGTAGAGGACGGCCCCGTCCAGCAGGTCCTGTTGGGAGAAGGCTGTGGCCGGCTGGCCGGCCCGGAGCAGCTGCCCCCAGTGCGGGCCGGCTGTGACACGGTAGCGGACCTCATCCCCGCTGCGAATGTCTAGGTTGGTGTCCAGGCGGAGCACGGCTGTGTCGATGGTGCCCTGGCCCCCCTGAGGGACCACGAGGCTGGAGCCATTGGCCACGCGGAGATAGGGCTCGGATGCCTGCACTTCAAGCA
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642    0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=4125927.000000
s hg38.chr15_KI270850v1_alt        103719 1940 +    430880 CCGTGATGGCCTGGTGCTGCCCATCGG--ACACCTGCAGCGGGATCCAGCCGTGGTCAG--CCTGAGTGTGTGAACAGGACTCGCCTCTTCCTGAGGCCCCTCCTGGATGAAGCGGCAGATGGGCTGCATGGGCTCATCCGTGGCCATGATACTGCCAGAGAGGAGGTCCTGGTGGGTCAGCACCAGCTGGGCCTCAGCAAAGCCCGAATCAGCATTGCTGAAGGCCATGTTGTCTGTAGTCAGCAGCCGCCACCTACCCCAGGCCACGTGGAAGACGCAGCTGATGGTCTGCATAGGGGCGTGGTCATTCACAGGCTGGATGGCCACTCAGAAGACACCCCATACCTCCTCCCAGGCCACGTCACCACTGCTCTGGTCCTGAT-GGCAGCAGGAAATGGGATATCATCTTCTGTGATCTCGGAGTCATCATGCTGCTAGACCAGCTGGCCATGCATCAGGTCTCCATTGGTGAAGGATGTCACCATAGTGATCTTGTCCTGTGTCCCACGCCAAGTCAACCTCCCATGGCGGGGCTGCTCCATGACCTCATAGAGGTACCTGGCACTGTTGAGACTCTTGATGAAGAGCTGGTCAGCAGAGAGGACACACCCACCACCCTCGGGCACCAC---------------GAGGACAGGCATGTCTGGGTCACCGCCAATATGGATGGAGAAGGTACAGAGTGGGGAGAAATATGGTGGAGCTGTGACATGGAAACAGAAGGTGTCCTCCACTGCCACTGAGGCATGTGCCATGGCCCCATAGGTCACCTCTGCAGCCTGTACGTCATCCTGGGTGAAGCCCTGACCGTCTGACAGCATCGTGCCCTGTAGTTGAAAGTTGCCTTTCCTGGGAGCCTGAACCACCTCACAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGCCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCTGCAGCATCCACACAGTGGCTCTCTGGATGGTCACTAGGAAGGACAGATTGCTCAGGATTTCCCAGCTCACCTGCACCTGCAGATCCAGGTTCTCCACGGTGTCCTCGGTGTAGTGCTGTGGGTCAGTGCTCAGGTACCTCACGTGGCCCTGCTCCACATCCTGCTGGTGGAACGCCTGTGTGACCCACCACTCAGCATCCTCCACCCCACCAGCCCCCTGCTTCTGCAGCTCCCTGAACGGCAGGCCTCCGGTGACACGGAACAGCACGGTCACATCCTGCCCCACGGCGCTGGTCTCCACCAACAGGTTGGTAGGCAAGATGGGCATGGCAGAGCCCTGGGCCAGATGCAGCCCTGTGCTGCGGTGGATTTGTATGGCCAGCTGGACAGCCACCACCTTCAGCATGGCCGGGGGGCTGGCCTGCAGTCCATTGCTGACCCGGAATGTCAAGTCCTGTGTAGGGCCACCACAGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCAGCAGGAGAACTCAGTCACCGGCTCCCCAGGCTGGTCTCGGTGCTCCACGGGGAGGCCAGAGGGGGTGCCAAGGAGCTGGAAGGTGAGGCCCTCACAGGCAGAGTCCAGGTCATAGGCCTGGAGAACCTCAGGCCCCA---GAGGCTTCTGTGTGTGTTCCAGGATCACCATAAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCATTGACAGGGTTGACCTGGATGGGCAGGAGGTCTGTTTGGCCCCTCCGCAGGCATGAGGGCATGGGCAACCAAGCCATCACTGACACCTCCAGCACCAGCTGGTCAGAGGTGTCCTCAGGGCCATCGTGGATGAAGCGGGCCTTGCAGTTCACCACGTCCAGGAGGGTGAACATTTTTCATGCCTGGGCACCCAGGACATCCAGCTCGAGCTCGCTGTAGTGTGCCCCTCAGGTCACGCTGAACAGCACCTGGGATTT
s panTro4.chr15_GL392289_random    178476 1940 -    187897 CCGTGATGGCCTGGTGCTGCCCATCGG--ACACCTGCAGCGGGATCCAGCCGTGGTCAG--CCTGAGTGTGTGAACAGGACTCGCCTCTTCCTGAGGCCCCTCCTGGATGAAGCGGCAGATGGGCTGCATGGGCTCATCCGTGGCCATGATACTGCCAGAGAGGAGGTCCTGGTGGGTCAGCACCAGCTGGGCCTCAGCAAAGCCCGAATCAGCATTGCTGAAGGCCATGTTGTCTGTAGTCAGCAGCTGCCACCTACCCCAGGCCACATGGAAGACGCAGCTGATGGTCTGCATAGGGGCGTGGTCATTCACAGGCTGGATGGCCACTCAGAAGACACCCCATACCTCCTCCCAGGCCACGTCACCACTGCTCTGGTCCTGGT-GGCAGCAGGAAATGGGATATCATCTTCTGTGATCTCGGAGTCATCATGCTGCTAGACCAGCTGGCCATGTATCAGGTCTCCATTGGTGAAGGATGTCACCATAGTGATCTTGTCTTGTGTCCCACGCCAAGTCAACCTCCCATGGCGGGGCTGCTCCATGACCTCATAGAGGTACCTGGCACTGTTGAGACTCTTGATGAAGAGCTGGTCAGCAGAGAGGACACACTCACCACCCTCGGGCACCAC---------------GAGGACAGGCATGTCTGGGTCACCGCCAATATGGATGGAGAAGGTACAGAGTGGGGAGAAATATGGTGGAGCTGTGACATGGAAACAGAAGGTGTCCTCCACTGCAACTGAGGCATGTGCCATGGCCCCATAGGTCACCTCTGCAGCCTGTACGTCATCCTGGGTGAAGCCCTGACCGTCTGACATCATCGTGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCACAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGCCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCTGCAGCATCCACACAGTGGCTCTCTGGATGGTCACTAGGAAGGACAGATTGCTCAGGATTTCCCAGCTCACCTGCACCTGCAGATCCAGGTTCTCCACGGTGTCCTCGGTGTAGTGCTGTGGGTCAGTGCTCAGGTACCTCACGTGGCCCTGCTCCACATCCTGCTGGTGGAACGCCTGTGTGGCCCACCACTCAGCATCCTCCACCCCACCAGCCCCCTGCTTCTGCAGCTCCCTGAACGGCAGGCCTCCGGTGACACGGAACAGCACAGTCACATCCTGCCCCACGGCGTTGGTCTCCACCAACAGGTTGGTAGGCAAGATGGGCATGGCAGAGCCCTGGGCCAGATGCAGCCCTGTGCTGCGGTGGATTTGTATGGCCGGCTGGACAGCCACCACCTTCAGCATGGCCGGGGGGCTGGCCTGCAGTCCATTGCTGACGCGGAATGTCAAGTCCTGTGTAGGGCCACCGCAGTGGACATAGACTAGGCTGTTGGCCTCCAACTCCCAGCAGGAGAACTCAGTCACCAGCTCCCCAGGCTGGTCTCGGTGCTCCACGGGGAGGCCAGAGGGGGTGCCAAGGAGCTGGAAGGCGAGGCCCTCACAGGCAGAGTCCAGGTCATAGGCCTGGAGAACCTCAGGCCCCA---GAGGCTTCTGTGTGTGTTCCAGGATCACCATAAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCATTGACAGGGTTGACCTGGATGGGCAGGAGGTCTGTTTGGCCCCTCCACAGGCATGAGGGCTTGGGCACCCAAGCCATCACTGACACCTCCAGCACCAGCTGGTCAGAGGTGTCCTCAGGGCCATCGTGGATGAAGCGGGCCTTGCAGTTCACCACGTCCAGGAGGGTGAACATTTTTCATGCCTGGGCACCCAAGACATCCAGCTCGAGCTCGCTGTAGTGTGCCCCTCAGGTCACGCTGAACAGCACCTGGGATTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9387661 1947 +  10928107 CCGTGATGGCCTGGTGCTGCCTGTCGG--ACACCTGCAGCAGGATCCAGCCGTGGTCAG--CCCGAGTGCGTGAACAGGACTCG-CTCTTCCTGAGG-CCCTCCTGGATGAAGCGGTAGATGGGCTGCATGGGCTCATCCGTGGCCATGATACTGCCAGAGAGAAGGTCCTTGTGGGTCAGCACCAGCTGGGCCTCAGCAAAGCCCGAATCAGCATTGCTGAAGGCCATGTTGTCTGTAGTCAGCAGCCACCACCTACCCCAGGCCACATGGAAGATGCAGCTGATTGTCTACATAGGAGCGTGGTCATTCACAGGCTGGATGGCCAGTCAGAAGACACCCCGTACCTCCTCCCAGGCCACATCACCACTGCTCTGGTCCTGGC-AGCAGCAGCAAATGGGATATCATCTTCCGTGATCTCGGAGTCATCATGCTGCTAGACCAGTTGGCCACACATCAGGTCTCCATTGGTGAAGGATGTCACCATAGTGGTCTTGTCCTGTGTCCCACGCCAAGTCAACCTCCCATGGCGGGGCTGCTCCATGACCTCATAGAGGTACCTGGCACTGTTGAGACTCTTGACGAAGAGCTGGTCAGCAGAGAGGACACACCCACCACCCTCAGGCACCAC---GAGGACATTGGTGAGGACAGGCATGTCTGGGTCACCGCCAATATGGATGGAGAAGGTACAGAGTGGGGAGAAATATGGTGGAGCTGTGACATGGAAACAGAAGGTGTCCTCCACTGCCACTGAGGCATGTGCCATGGCCCCATAGGTCACCTCTCCAGCCTGTATGTCATCCTGGGTGAAGCCCTGACCATCTGACAGCTTCGTGCCCTGTAGTTGAAGGTTGCCTTTCCAGGGAGCCTGAACCACCTCACAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCTAGGTGGGCTGTGGTGAGGGCCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCACCCGCAGCATCCACACGGTGGCTCTCTGGATGGTCACTAGGAAGGAC--ATTGCTCAGGATTTCCCAGCTCACCTGCACCCGCAGATCCAGGTTCTCCACAGTGTCCTCAGCATAGTGCTGTGGGTCAGTGCTCAGGTACCTCACGTGGCCCTGCTCCACATCCTGCTGGTGGAACGCCTGTGTGGCCCACCACTCAGCACCCCCCACACCACCAGCCCCCCACTTCTGCAGCTCCCCGAACTGCAGGCCTCCGGTGACACGGAACAGCACGCTCACATCCTGCCCCACGGCGCTGGTCTCCACCGACAGGTTGGTAGGCAAGATGGGCATGGCAGAGCCCTGGGCCAGATGCAGCCCTGTGCTGCGGTGGATCTGTATGGCCGGCTGGATGGCCACCACCTTCAGCATGGCCGGGGGGCTGGCCTGCAGTCCATTGCTGACCCGGAACGTCAAGTCCTGTGCGGGGCCACCGCAGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCAGCAGGAGAACTCGGTCACCGGCTCCCCAGGCTGGTCTCGGTGCTCCATGGAGAGGCCAGAGGGGGTG-CAAGGAGCTGGAAGGTGAGGCCCTCACAGGCAGAGTCCAGGTCATAGGCCTGGAAAACCTCAGGCCCCA---GAGGCTTCTGTGTGTGTTCCAGGATCACCATAAGGCTGCCATGTGGGAAGATGATGCGGGGTGAGTCATTGACAGGGTTGACCTGGATGGGCAGGAGGTCAGTTTGGCCCCTCCGCAGGCATGAGTGCATGGGCACCCAAGCTGTCACTGACACCTCCAGCAGCAGCTGGTCAGAGGTGTCCTCAGGGCCATCGTGGATGAAGCAGGCCTTGCAGTTCACCACGTCCAGGAGGGTGAACATTTTTCATGCCTGGGCACCCAGGACATCCAGCTCGAGCTTGCCATAGTGTGCCCCTCAGGTCACACTGAACAGCACCTGGGATTT
i ponAbe2.chr15_random          I 825 C 0
s nomLeu3.chr6                   95274024 1953 + 121039945 GCGTAGTGTCCTGGTGTTGCCCATCGG--ACACCTGCAGCTGGATCCAGCCATGGTCGGCCCCTGAGTGCACGAACAGTACTCGCCTCTTCCTGAGG-TCCTCCTGGGTGAAGCGGTAGATGGGCCGTGTGGGCTCATCTACGGCCACGATACTGCCAAAGAGGAGGTCCTTGCGGGTCAGCACCAGCTGGGCATCAGCAAAGCCCGAGTCAGCATCGCTGAAGGCCACGTCGTCCGTAGTCAGCAGCCGCCGCCCGCCCCGGGCCACATGGAAGATCCGGCTGATGGTCTGCACAGGGGCGTGGTCATTCACGGGCTGGATGGCCACTCGGAAGACACCCCGTACCTCCTCCCAGGCCATGTCACCACTGCTCTCGCCCTGGCGGGTAGCAACAAATGGGATATCATCTTCTGTGGTCTCGGAGTCATCATGCTGGTAGACCAGCCGGCCACGCAACAGGTCTTCGTTGGTGAAGGATGTCACCATAGTGGTCTTGTCCTGTGTCCCACGCCAAGCCAACCTCCCATGGCGGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCACTGTTGAGACTCTTGACAAAGAGGCGGGCAGCAGAGAGGACACTCTCACCACCCTCAGGCACCACAAGGAAGACATTGGTGAGGATGGGCACGTCTGGGTCATCACCAATGTGGATGGAGA--GTACAGAGCAGGGGGAA--TGGGTGGAGCTGTGACATGGAAACAGAAGGTGTGCTTGACTGCCTCCGAGGCACGTGCCATGGCCCCATAGGTCACCCGGCCAGCCTGTATGTCATCTTGGGTCAAGCCCTGGCCATCTGACAGCCTCGTGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCATAATGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGTCTCCTGATGGGTGTTCTGAGTGTGCAGTGGCTCCAGCCACAGCATCCACACGGTGGCTCTCTGGATGGTCACTGGGAAGGACAGATTGCTCAGGATTTCCTGGCCCACCTGCACCTCCAGGGCCAGGTTCTCCACGGTGTCGTCAGTGTGGTGCTGTGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACATCCCGCTGGTGGAACGCCTGTGTGGCCCACCACTCAGCACCCTCCACCCCACCTGCCCCCTGCTTCTGCAGCTCCCCGAACTGCAGGGCACCAGTGACGCGGAATAGCACGCTCACATCCTGCCCCACGGCACTGGTCTCCACCGACAGGTTGGCGGGCAAGATGGGCATGGCAGAGCCTTGGGCCAGGCGCAGCCCTGTGCTGCGGTGGATCTGTATGGCTGGCCGGATGGCCACCACCTTCAGCGTGGCCGGGGGGCTGGCCTGCAGTCCATCGCTGACCCGGAACGTCAAGTCCTGCGCAGGGCCACCGCGGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCGGCAGGAGAACTCGGTTGCCGGCTCCCCAGGCTGGTCTCGGCGCTCCACGGGGAGGCCAGAGGAGGTGCCAAGGACCTGGAAGGCGAGGCCCTCACAGGCAGAGTCCGGGTCATAGGCCTGGAAAACCTCGGGCCCCA---GAGGCTTCTGCGTGTGTTCCAGGATCACCATGAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCGTTGACAGGGTTGACCTGGATGGGCAGGAGGTAAGTTTGGCCCCTCCGCAGGCATGAGGGCATGGACACCCGAGCCGTCACTGACACGTCCAGCACCAGCTGGTCGGAGGTGTCCTCAGAGCCATCGTGGATGAAGCGGGCCTTGCGGTTCACCACGTCCAGGAGGGTGAACATTTTTCGTGCCTGGGCTCCCGGGATGTCCAGCTCGAGCTCGCCATGGCGTGCCCCTCGGGTCACGCTGAACAGCACCTGGGATTT
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54042324 1929 + 170124641 GCGCAGTGGTCTGGTGTTGCCCATCGG--ACACCTGCAGCTAGATCCAGCCATGATCAG--CCCAAGCGCATGAACAGGACTCGCCTCTTTCTGAGG--CCTTCTGGGTGAAGTGGTAGATGGGCCGCGTGGGCTCATCCACGGCCACGATACTGCCAAAGAGGAGGTCCTTGCGGGTCAGCACCAGCTGGGCGTCAGCAAAGCCCGAGT--------CTGAAGGCCACGTCGTCTGTAGTCAGCAGCCGCCACCCACCCTGGGCCATATGGAAGACGCGGCTGATGGTCTGCACAGGGGCGTGGTCATTCACGGGTTGGATGGCCACCCGGAAGACTCCCCGTACCTCCTCCCAGGCCATGTCACCACTGCTCTCACCCTGGCGGGTAGCAACAAATGGGATATCATCTTCTGTGGTCTCGGAGTCATCATGCTGGTAGACCAGCCGGCCACGCAACAGGTCTTCATTGGTGAAGGATGTCACCATAGTGGTCTTGTCCCGTGTCCCACGCCAAGCCAACCTCCCATGGCGGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCACTATTGAGACTCTTGACAAAGAGGTGGTCAGCAGAGAGGACACCCTCACCACCCTCGGGCACCATGAGGAGGACATTGGTGAGGACGGGCGCGTCTGGGTCACCACCAATGTGGATGGGGAAGGTATAGAGCGGGGAGAAATATGGCGGAGCTGTGACACGGAAACGGAAGGTGTCCTCGACTGCCTCCGAGGCACGTGCCGTGGCCCCATAGGTCACCCGGCCAGCCTGTATGTCATCCTGGGTGAAGCCCTGACCGTCTGACAGCCTCGTGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCATAGTGGAAGGCTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGTCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCTGCAGCATCCACACGGTGGCTCTCTGGATGGTCACTGGGAAGGACAGATTGCTCAGGATCTCCTGGCCCACCTGCACCTCCAGGGCTAGGTTCTCCACGGTGTCCTCGGTGCGGTGCTGTGGGTCGGTGCTCAGGTACCTCATGCAGCCCTGCTCCACATCCCGCTGGTGGAACGCCTGTGTAGCCCACCACTCAGCACCCTCCACCCCACCTGCCCCCTGCTTCTGTAGCTCCCCGAACTGCAGGGCTCTGGTGACGCGGAACAGCACGCTCACATCCTGCCCCACGGCATTGGTCTCCACCGACAGGTTGGCGGGCAAGATGGGCATGGCAGGGCCTTGGGCC------------TTGCTGCGGTGGATCTGTATGGCTAGCCGGACAGCCACCACCTTCAGCGTGGCCGGGGGGCTGGCCTGCAGTCCATCGCTGACCCGGAATGTCAAGTCCTGTGCAGGGCCACCGCGGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCTGGCAGGAGAACTCGGTTGCCGGCTCCCCAGGCTGGTCTCGGCGCTGCACAGGGAGGCCAGAGGGGGTGCCAAGGAACTGGAAGGTGAGGCCCTCACAGGCAGAGTCTGGGTCATAGGCCTGGAAAACCTCGGGCCCCAGTGGCGGCTTCTGTGTGTGTTCCAGGATGACCATGAAGCTGCCATGTGGGAAGACGATGTGGGGAGGGTCATTGAGAGGGTTGACCTGGATGGGCAGGAGGTCAGTTTGGCCCCTCCGCAGGCATGAAGGCATAGGCACCCGAGCCGTCACTGACACCTCCAGCACCAGCTGGTCGGAGGTGTCCTCAGAGCCATCGTGGATGAAGCGGGCCTTGCGGTTCACCACGTCCAGAAGGGTGAACATTTTTTGTGCCTGGGCACCCGG--------GCTTGAGCTCACCGTCACGTGCCCCTCGGGTCACACTGAACAGCACCTGGGATTT
i rheMac3.chr7                  C 0 I 10
s chlSab2.chr26                  50419212 1941 -  58131712 GCACAGTGGCCTGGTGTTGCCCATCGGACACACCTGCAGCTGGATCCAGCCATGATCAG--CCCAAGTGCATGAACAGGACTCGCCTCTTTCTGAGG-TCCTCCTGGGTGAAGCGGTAGATGGGCCACGTGGGCTCATCCACGGCCACGATACTGCCAAAGAGGAGGTCCTTGCGGGTCAGCACCAGCTGGGCGTCAGCAAAGTCCGAGT--------CTGAAGGCCACGTCGTCTGTAGTCAGCAGCCGCCACCCACCCCGGGCCACATGGAAGACGCGGCTGATGGTCTGCACAGGGGCGTGGTCATTCACGGGTTGGATGGCCACCCGGAAGACACCCCGTACCTCCTCCCAGGCCATGTCACCACTGCTCTCACCCTGGCGGGTAGCAACAAATGGGATATCATCTTCTGTGGTCTCGGAGTCATCATGCTGGTAGACCAGCCGGCCACGCAACAGGTCTTCATTGGTGAAGGATGTCACCATAGTGGTCTTGTCCGGTGTCCCACGCCAAGCCAACCTCCCATGGCGGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCACTATTGAGACTCTTGACAAAGAGGTGGTCAGCAGAGAGGACACCCTCACCACCCTCAGGCACCACGAGGAGGACATTGGTGAGGACGGGCGCCTCTGGGTCACCACCAATGTGGATGGGGAAGGTATAGAGCGGGGAGAAATATGGCGGAGCTGTGACACGGAAATGGAAGGTGTCCTCGACTGCCTCCGAGGCACGTGCTGTGGCCCCATAGGTCACCCGGCCACCCTGTATGTCATCCTGGGTGAAGCCCTGACCGTCTGACAGCCTCGTGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCATAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGACTGTGGTGAGGGTCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCCGCAGCATCCACACGGTGGCTCTCTGGATGGTCACTGGGAAGGACAGATTGCTCAGGATCTCCTGGCCCACCTGCACCTCCAGGGCTAGGTTCTCCACGGTGTCCTCGGTACGGTGCTGTGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACATCCCGCTGGTGGAACGCCTGTGTGGCCCACCACTCAGCACCCTCCACCCCACCTGCCCCCTGCTTCTGCAGCTCCCCGAACTGCAGGGCTCCGGTGACGCGGAACAGCACGCTCACATCCTGCCCCACGGCATTGGTCTCCACCGACAGGTTGGCGGGCAAGATGGGCATGGCAGAGCCTTGGGCCAGGCGCAGCCCTGTGCTGCGGTGGATCTGTATGGCCGGCCGGACGGCCACCACCTTCAGCGTGGCCGGGGGGCTGGCCTGCAGTCCATCGCTGACCCGGAATGTCAAGTCCTGTGCAGGGCCACTGCGGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCGGCAGGAGAACTCGGTTGCCGGCTCCCCAGGCTGGTCTCGGCGCTGCACGGGGAAGCCAGAGGGGGCGCCAAGGAACTGGAAAGTGAGGCCCTCACAGGCAGAGTCTGGGTCATAGGCCTGGAAAACCTCGGGCCCCA---GCGGCTTCTGTGTGTGTTCCAGGATCACCATGAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCATTGACAGGGTTGACCTGGATGGGCAGGTGGTAAGTTTGGCCCCTCCGCAGGCATGGGGGCATAGGCACCCGAGCCATCACTGACACCTCCAGCACCAGCTGGTCGGAGGTGTCCTCAGAGCCATCGTGGATGAAGCGGGCCTTGCGGTTCACCACGTCCAGGAGGGTGAATATTTTTTGTGCCTGGGCGCCCGG--------GCTTGAGCTCACCGTCACGTGCCCCTTGGGTCACGCTGAACAGCAGCTGGGATTT
i chlSab2.chr26                 C 0 I 10
s mm10.chr9                      67706764 1969 - 124595110 TGGCAGTAGCCTGGTGCTGCCCATCAG--ACACCTGCAGCTGGAGCCAGCCGTGGTCGGCCCCCGAGTGCACAAACAGGACTTGCTTCTTCCTGAGA-TCCTCTTGGGTGAACCGGTAGATGGGCCTCGTGGGCTCCTCCATAGCCACAATGCTGCCAAAGAGGAGGTCCTTGCGGGTCAGCACCAGTTGCGCATCACTGAACCCTGAATCAGCATCGCTGAAGGCTACATCATCTGTAGTCAGCAGTCGCTGTCCACCCCGGGCCACGTGGAAGACACGGCTAATGGTCTGCACAGGGGCGTGGTCATTCACAGGCTGGATGGCCACTCGGAAGACACCACGCACCTCCTCCCAGGCCATGTCACCACTGCCCTCTCCCTGGCGTGTGGCCACAAACGGGATATCATCCTCTATGGTCTCAGAGTCATCGTGCTGGTAGACCAGTCGGCCATGAAGTAGGTCCTCATTAGTGAAGGATGTCACTGGGGTGGACTTCCCCTTTGGGTCCCTCCAAGCCAACTTGCCATGGTGAGGCTGCTCCATCACCTCATAGAGATAGCTGGCGCTGTTGAGACTCTTGACGAAGAGGTGGTCGGCAGACAGCACGCCCTCCCCTCCCTCGGGGACCATGAGAAGGACGTTAGTGAGGACGGGAGCATTTGGGTCACCACCAATGTGGATGGGGAATGTGTAGAGCGGGGAGAAATGGGGTGGGGATGTGACCCGGAAACGGAAGGAGTCATCGGCTGCCTCAGAGGTCCGCATTGTGGCCCTGTAGGTCACCCGACCGGCCTGCAGGTCACTCTGGCTGAAGCTCTCGCCGTCTGACAGCCTTGTACCCTGAAGCAGGAGGTTGCCTCTTCTGGGGGCCTGAACCAACTCATAGTGGAAGGTATGAGGTTGTGGGCTTCCCTCTTCCTCCTCTTCCTCCAGGGATGCCTCTAGGTGGGCTGGGGTGAGGGTCTCCTGATGAGGGTTCTGTGTATGCAGAGGTTCAAGCCTCAGCATCCATACTGTGGCCCTCTGGATGGTCACTGGGAAAGACAGATTGCTCAGTGTCTCCTGGCCCACCTGCACCTCTAAGATCAGGTCCTCCACTGTGTCTTGGGTGTGGTGCTGTGGGTCAGTGCTCAGGTACCTCACTCGGCCTTGCTCCACATCGCGCTGGTGGAAGGCCAGTGTGTCCCACCACTCGGTGCCCTCGACCCCTCCGGCCCCCTGCTTCTGCAGCTCCCCGAATTGCAAGGTACCAGTGACTCGGAACAGCACGCTCACATCCTGTCCCACCGCGTTCGTTTCTACTGACAGGTTGGCAGGCAAGATGGCTGCGGCAGAGCCCTGGGCCAGGTGCAGCCCTGTGTTGTGGAGGATCTGTATGGCTGGCCGGACGGCCACTACCTTCAGTGTCGCTGGAGCACTGGCCTGCATCCCATCACTGACCCGGAATGTTAGGTCCTGTGCAGGCCCACCACGGTGGACATAGACTATGTCGCCCACCTCCAGTTCCCGACAGGAAAACTCAGTTGCTGGCTCTCCTGGCTGGTCTCGGTGTTCCACAGGGACACCAGAGGAGACGCCAAGGAGCTGGAAGGTGAGACCCTCACAGGCAGAGTCCGGGTCGTAGGCCTGGAAAATCTCCGGTCCCA---GAGGCTTCTGTGTGTGTTCCAGGATCACCATGAGGCTGCCGTGGGGGAAGATGATGCGAGGTGGATCGTTGACAGGATTGACCTGGATGGGCAGGATGTAAATTTGGCCCCTCCGCAGGCAGGAGGGCACAGGTGCCCGAGCAGTCACAGACACCTCCAGCATCAGCTGGTCAGAGGTGTCTTCAGAGCCATCGTGAACAAAGCGGGCCTTACGGTTCACCACGTCCAACAGGGTAAACATTTTCCGGGTTTGGGCTCCCAGGATGTCTAGCTCCAGGTCACCATGTCGTGCACTCTGGCTCACGCTGAACAGCACCTGGGACTT
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38475822 1960 +  40214260 GCGCGGTGGCCTGGTGCCGCCCGTCGG--ACACCTGCAGCTGGATCCAGCCGCGGTCGGCCCCGGAGTGCACGAACAGGACGCGCCTCTTCCGGAGG-TCCTCCTGGGAGAAGCGGTAGATGGGCCGCGTGGGCTCGTCCGCGGCCACGATGCTGCCGAAGAGAAGGTCCTTGCGGGTCAGCACCAGCTGCGCGTCGGCGAAGCCGGAGTCGGCGTCACTGAAGGCCACGTCGTCGGTCGTCAGCAGCCGCCGCCCGCCCCGGGCCACGTGGAAGACGCGGCTGACGGTCTGCACGGGAGCGTGGTCGTTCACGGGCTGGATGGCCACGCGGAAGACGCCCCGGACCTCCTCCCAGGCCAGGCCGCCGCTGCCCTCACTCTGGCGGGTTGCCACGAAGGGGATGTCGTCTTCCGTGGTCTCGGAGTTGTCATGCTGGTAGACCAGCCGGCCCTGCAGCAGGTCCTCGTTGGTGAAGGACGTCACCGCGGTGGCCTCGTCCTGCGCCCCCCTCCAGACCAGCCGCCCGTGGCGGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCGCTGTTGAGGCTCTTGACGAACAGGTGTTCCGCGGAGAGGACGCCCTCGCCTCCCTCGGGCACGGAGAGGAGGACGTTGGTGAGGACGGGGGCGTCGGGGTCACCCCCGATGTGGATGGGGAAGGTGTAGAGCGGGGAGAAATGTGGCGGAGCCGTGACGCGGAAACGGAAGGCGTCCTCCACGGTCTCCGAGGTGCGCGCCGTGGCCCCGTAGGTCACCCGGCCGGCCTGCAGGTCATCCTGGGTGAAGCCCTGCCCCTCGGACAGCCGGGCGCCCTGCAGCCTGAGGTTACCCTTCCTGGGGGCCTGAACCAGCTCGTAGTGGAAGGTGGTGGGGCTGGGGCCCGCC---------CCCTCCTCCAGAGCGGCCTCCAGGTGCGCGCCGGTGAGCGCCTCCTGCCGCGTGGTGTGGGTGCGCAGGGGCTCGAGCCGCAGCAGCCGCACGGTGGCTCTCTGGATCGTCACCAGGAAGGACAGATTGCTCAGGGTCTCCTGGCCCACCTGAACCTCCAGGGCCACGCGCTCCACGGCGTCCTCCGTGCGGTGCTGCGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACGTCCCGCTGCTGGAAGGCCTGCACCGGGCGCCACTCCGCGCCCTCGGCGCCCCCCGCGCCCTGCTTCTGCAGCTCCCCGAACCGCAGGGCCGCGGCGACCCGGAACAGCACGCTCACATCCTGCCCCACCGCGTTGGTCTCCACCGACAGATTGGCGGGCAGCACCGGGGCGGCGGAGCCCTGGGCCAGGCGCAGCCCCGTGTTGTGGCGGACCCGGATGCTGGGCCGGACCGCCACCACCTGCAGCGTGGCCGGAGCGCTGGCCTGCAGCCCGTCGCTGACGCGGAACGTCAGGTCCTGGGCGGGCCCGCTCCGGTGCACGTAGACCAGGCCGCCCGCCTCCAGCTCCCGGCAGGAGAACTCGGTGGCTGGCTCCCCGGGCTGCTCCTGGCGCTCCACCGGCAGGCCCGGGGCGGTGCCAAGGAGCTGGAAGGTGAGGCCCTCGCAGGCAGAGTCTGGGTCGTAGGCCTGGAAGACCTCGGGCCCCA---GGGGCTTCTGTGTGTGTTCCAGGATCACCATGAGGCTGCCGTGGGGGAAGATGATTTGGGGTGGGTCGTTGACCGGGTTTATCTGGATGGGCAGGATGTAAGTCTGGCCCCTCCGGAGGCAGGAGGGCACAGGGCCCCTGGCGGTCACGGACACCTCCAGCATCAGCTGGTCGGAGGTCTCCTCCGAGCCATCGTGGACGAAGCGGGCCTTGCGGTTCACCACGTCCAGGAGGGTGAACATTTTCCGTGCCTGGGCTCCCGGGACGTCCAGCTCGAGCTCCCCGTGGCGGGCCCCACGGCTCACGCTGAACAGCACCTGGGATTT
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642    0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=923442.000000
s hg38.chr15_KI270850v1_alt        105659 833 +    430880 ACGCAGTTCAGCCTCCATCAGTGCCAGCATGGGCTGCACATGCCACCACTCAAGCCAGGCTGTGCCACCCTCGGTCACCACCACTGCGCTGAT----AGCAGCTGGATGAAATTGGCAAAGACAGGAGGTAGCCCTGGCTCAGGCACGCATGGCTCAGCTAGCTCCACGGACAGCCAAGCCTTGGGAGCCAGGGTGGAGAAAGCTTCATAATGGCCATAGGCATTG------------TCTACCTCCTCCAGTCTGCAGCCAGCCACCATGTTGTGCGTCAGCAAGGCTTCCCACAGCCCCTGCCTCTAGCCATTGACACTGAGGTCTTCCATGCAGCCAGCCCAGCAGGGAGGCATTGGCAGCCCCTGGTGTCAGGCCTGAGCGGTGTTCCTGGAGGTGATGAGAGGCCTCTGCAACCAGCTCCCCAAGAAGGAGACTGTCACGTGGCTCCAGGTAGCTGAGGACTCCTCAGTT-------CGTGTGGGGTACTGGTCCATGGAGATTTCTAGCTGGTGAATGTTGATGTGGATGCTGACCTTGTGGGGCTGTGCGTCAGTCACAGGCACACTGTTGAGGAGCAATACAGTACCCTGGCCCTTCTCAACCATGGACCACAGGTGGCCCTCAAATATGTCCACATGGATGAAGTCCCCATGCCAGCCTGCTGCCTGGAAGGCCAAGGGTGCCTGCCAGCTCTGTGTGGTGAGTGTAAACTCCAGGGTTCCTTCATCCTGAGTGCCCCAGGCAGGCAAGGCAGCCAGAGAGTGGGACCCAGAGAAGCCCAGGGCCACATCATCATTGGCAGAAAACTCTTCAGCACAGCCCTCATGCTTATTGGGGGTCAGAGGCTG
s panTro4.chr15_GL392289_random    180416 852 -    187897 ACGCAGTTCAGCCTCCATCAGTGCCAGCATGGGCTGCACATGCCACCACTCAAGCCAGGCTGTGCCACCCTCAGTCACCACCACTGCGCTGAT----AGCAGCTGGATGAAATTGGCAAAGACAGGAGGTAGCCCTGGCTCAGGCACGCATGGCTCAGCTAGCTCCACGGACAGCCAAGCTTCGGGAGCCAGAGTGGAGAAAGCTTCATAATGGCCATAGGCATTGTCCTCATACTCCTCCACCTCCTCCAGTCTGCAGCCAGCCACCAAGTTGTGCGTCAGCAAGGCTTCCCACAGCCCCTGCCTCTAACCATTGACACTGAGGTCTTCCATGCAGCCAGCCCAGCAGGGAGGCATTGGCAGCCCCTGGTGTCAGGCCTGAGCGGTGTTCCTGGAGGTGACGAGAGGCCTCTGCAACCAGCTCCCCAAGAAGGAGACTGTCATGTGGCTCCAGGTAGCTGAGGACTCCTCGGTTCAAAGTACGTGTGGGGTACTGGTCCATGGAGATTTCTAGCTGGTGAGTGTTGATGTGGATGCTGACCTTGTGGGGCTGTGCGTCAGTCACAGGCACACTGTTGGGGAGCAGTACAGTACCCTGGCCCTTCTCAACCATGGACCACAGGTGGCCGTCAAATATGTCCACATGGATGAAGTCCCCATGCCAGCCTGCTGCCTGGAAGGCCAAGGGTGCCTGCTAGCTCTGTGTGGTGAGTGTAAACTCCAGGGTTCCTTCATCCTGAGTGCCCCAGGCAGGGAAGGCAGCCAGAGAGTGGGGCCCAGAGAAGCCCAGGGCCACATCGTCATTGGCAGAAAACTCTTCAGCACAGCCCTCATGCTTATTGGGGGTCAGAGGCTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9389608 852 +  10928107 ACGCAGTTCAGCCTCCATCAGGGCCAGCATGGGCTGCACATGCCACCACTCAAGCCAGGCCGTGCCACCTTCAGTCACCACCACTGGGCTGATAGTCAGCAGCTGGGTGAAATTGGC--AGACAGGAGGTAGCCCTGGCTCAGGCACGCATGGCTCAGCTAGCTCCATGGACAGCCAAGCCTTGGGGGCCAGGGTGGAGAAGGCTTCATAATGGCCATAGGCATTGTCCTCATACTCCTCCACCTCCTCCAGTCTGCAGCCAGCCACCATGTTGTGTGTCAGCAAGGCTTCCCACAGCCCCCACCTCTGGCCATTGACACTGAGGTCTTCCATGCAGCCAGCCCAGCAGGGAGGCATTGGCGGCCCCTGGTGTCAGACCTGAGCAGTGTTCCCAGAGGTGACGAGAGGCCTCTGCAACCAGCTCCCCAAGAAGGAGACTGTCACGTGGCTCCAGGTAGCTGAGGACTCCTCGGTTCAAAGTACGTGTGGGGTACTGGTCCATGGAGATTTCTAGCTGGTGAGCGTTGATGTGGATGCTGACCTTGTGGGGCTGCGCGTTGGCCACAGGCACACTGTTGAGGAGCAGTACATTACCCTGGCCCTTCTCGACCATGGACCAC--GTGGCCCTCAAATATGTCCACATGGATGAAGTCCCCACGCCAGCCCGCTGCCTGGAAGGCCAAGGGTGCCTGCCAGCTCTGTGTGGTGAGTGTAAACTCCAGGGTTCCTTCATCCTGAGTGCCCCAGGCAGGGAAGGCAGCCAGAGAGTGGGGCCCAGAGAAGCCCAGGGCCACATCGTCATTGGCAGAAAACTCTTCAGCACAGCCCTCATGCTTATCGGGGGTCAGAGGCCA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95275977 845 + 121039945 GCGCAGCTCAGCCTCCATCAGGTCCAGCGTGGGCTGCACGTGCCGCCACTCAAGCCAGGCTGTGCCCCCCTCAGCCACCACCAGTGGGCTGAT----AGCAGCTGTGTGAAATTGGCAAAGACAGGAAGCAGCCCTGGCTCAGGCACGCATGGCTCAGGCAGCTCCATGGCAGGCCAAGCCTCGGGGGCCAGGGTGGAGAAAGCTTCATAATGGCCATAGGCAtcgtcctcatac---tcctcctcctccAGCCTGCAGCCAGCCGCCATGTTGCGCGTCAGCAAAGCTTCCCTCAGCCCCTGCCTCTGGCCATTGACACTGAGGTCTTCCATG----CAGCCCAGCAGGGAGGCATTGGTGGCCTCTGGTGTCAGGCCCAGGCGGTGTTCCTGGAGGTGACGAGAGGCCTCTGCATCCAGCCCCCCGAGAAGGAGACTGCCCCGTGGCTCCAGGTAGCTGAGGACTCCTCGGTTCGAAGTATGCGTGGGGTACTGGTCCACGGAGATTTCCAGCCGGTGAGCATTGATGTGGACACTGACCTCATGGGGCTGCCCGTCGGCCACAGGCACACTGTTGTGGAGCAATACGGTACCCTGGCCCTTCTCCACCACGGCCCGCAGGTGGCCCTCAAATATGTCCACATAGATGAAGTCCCCACGCCGGCCCCCTGCCTGGAAGGCCAAGGGTGCCTGCCGGCTCTGTGTGGTGAGTGTAAACTCTAGGGTTCCTTCGTCCTGAGTGCCCCAGGCAGGGAAGGCAGCCAGAGAGTGGGGCCCAGAGAAGCCCAGGGCCACATCATCACCGGCAGAAAACTCTTCAGCACAGCCCTCATGCACATCGGGGGTCAGAGGCCG
i nomLeu3.chr6                  C 0 C 0
s mm10.chr9                      67708733 849 - 124595110 GCGCAGCTCTGCCTCTGTCAGGTCCAGGGTGGGCTGCACGTGCCGCCACTCAAGCCAGGCCGTGCCACCCTCGGCCACCACCAGGGGGCTGATGGTAAGCAGCTGGGTGAAGTTTGCAAAGACAGCAGGCAGTCCCGGCTCAGGAATACATGGCTCTGGCAGTTCCATGGCTGGCCAAGCTTCTGGTGCCAGGGTGGAGAAAGTTTCATATGGGCCATAGACCTCTTCTTCATAT---TCATCCTCCTCAGGCCTGCATCCTGCTGACATGTCACGGGTCAGCCAGGCATCCCGGAGGCCCTGCCTCCTGCCATTAACACTGAAATCTTCTATG----CAGCCTACCAGGGAGATATTGGCAGCCCCCGGTGCCAGGCCCAGACGGTGCTCTTGGAGGTGGCGAGAGGCTTCTGTGTCCAGACCCCCAAGGAGGAGACTGCCACGTGGCTCCAGGTAGCTGAGGACCCCACGGTTGAAAGTACGCGTAGGGTATTGGTCTACAGAGATTTCCAGCCGGTGAACATCTATGTGTACGCTGACCTCGTGGGGCTGCCCATCAGCCACAGGCACGCTGTTGCGGAGTAGCATGGTACCTTGGCCTTTCTCAACCACAGCCCGCAAGTGGCCCTCAAATATGTCCACGTAGATAAAGTTGCCACGCTTGTCCCCTGCTTGGAAGGCCAGGGGTGCTTGCTGACTCCGAGTGGTGAGCGTAAACTCCAGGGTGCCTTCCTCCCGAGTGCTCCAGGCAGGGAAGGCAGCCAGTGAGTGGGGCCCAGAGAAGCCCAGGCCCACTTCATCACCAGCAGAGAATTCTTCAGCACAACCTTCATGAACATCGGAGGTCAGCGGACG
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38477782 849 +  40214260 ACGCAGCTCGGCCTCGCTCAGGTCCAGCGTGGGCTGCAGGTGCCGCCACTCAAGCCAGGCTGTGCCCCCCTCGGCCACCACCAGCGGGCTGACAGTCAGCAGTTGGGTGAAGTTGGCAAAGACGGGAGGCAGCCCCGGTTCGGGCACGCAGGGCTCGGGCAGCTCCACGGCGGACCAGGCCTCCGGTGCCAGGGTGGAGAGAGCTTCATAGGTGCCGTAGGTGTCCTCCTCGTAC---TCGTCTTCCTCCAGGCTGCAGCCGGCCACCATGCTGCGAGTCAGCGAGGCTTCCCGGAGCCCCTGCCTCTGGCCGTTGATGCTGAGATCCTCCATG----CAGCCCAGGAGGGAGACGTTGACGGCCCCCGAGGCCAGGCCCAGGCGGTGTTCCTGGAGGTGGCGGGAGGCCTCTGTGTCCAGCCCCCCCAGGAGGAGACTGCCGCGGGGTTCCAGGTAGCTGAGGATCCCACGGTTGGAAGTCCGTGTGGGGTACTGGTCCACGGAGATTTCCAGCTGGTGAGCATCCACGTGGACACTGACCTCATGGGGTAGCCCGTCAGCCACGGGCACGCTGTTGTGGAGCAACACGGTGCCCTGGCCCTTCTCCACCACAGCCCGCAGGTGGCCCTCAAATATGTCCACGTAGATGAAATCCCCGTGCCGGCCGCCCGCCTGGAAAGCCAGGGGCGCCTGTCGGCTCCGAGTGGTGAGTATGAACGCCAGGGTGCCCTCCTCCCGAGTGTTCCAGGCAGGGAAGGCAGCCAGCGAGTGGGGCCCAGAGAAGCCCAGAGCCACGCTGTCATCAGCAGAAAACTCTTCAGCGCAGCCCTCGTGCACGTCAGGGGTCAGTGGTCG
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50421153  10 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54044253  10 + 170124641 I

a score=745990.000000
s hg38.chr15_KI270850v1_alt        106492 424 +    430880 GAGGAGTCTGCGGCCATTGAGAGCGGCTGCATGGAGGCAACCCCTCAGGGGATGGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGTCTCCCAGTGCTCCCAACAAAGAGCCCATA-GGGACTTCTAGGGGG---GCTCCCAGGACTACAGAGGAGGCATTCAGAAACCCATTGACTGACAATGTGGGCCAGTCCTCTGAGACAGTCAGAACTGTGGTGTGGGGGACGGAGCCACTCAGTAGAATTTCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGACAAGCCTGACCTGAGGAGAGACGGGGAATGGGAGATGGGGGGCAGCACTTTGAATCCATCATTTCCCTTATAAAAGCACAGTGGGTTCCCCACAG--GGGGCCCCAGAGCAGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
s panTro4.chr15_GL392289_random    181268 425 -    187897 GAGGAGTCTGCGGCCATTGAGAGTGGCTGCATGGAGGCAACCCCTCAGGGGATGGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGTCTCCCAGTGCTCCCAACAAAGAGCCCATAGGGGACCTCTAGGGGG---GCTCCCAGGACTACAGAGGAGGCATTCAGAAACCCATTGACTGACAATGTGGGCCAGTCCTCTGAGACAGTCAGAACTGTAGTGTGGGGGACGGAGTCACTCAGTAGAATTTCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGACAAGCCTGACCTGAGGAGAGACGGGGAATGGGAGATGGGGGGCAGCACTTTGAATCCATCATTTCCCTTATAAAAGCACAGTGGGTTCCCCACAG--GGGGCCCCAGAGCAGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9390460 427 +  10928107 GAGGAGTCTGTGGCCATTGAGAGTGGCTGCATGGAGGCAACCCCCCAGGAGACGGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGTCTCCCAGTGCTCCCAACAAAGAGCCCATAGGGGACCTCTAGGGGG---CCTCCCAGGACCACAGAGGAGGCATTCAGAAACCCATCGACTGACAATGTGGGCCAGTCCTCTGAGACAGTCAGAACTGTAGTGTGGGGGACAGAGTCACTCAGTAGAATTTCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAAGACAAGCCTGACCTGAGGAGAGACGGGGAATGGGAGACGGGGGGCAGCACTTTGAATCCATCATTTCCCTTATAAAAGCACAGTGGGTTCCCCACAGTTGGGGCCCCAGAGCAGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95276822 427 + 121039945 GAGGAGGCTGCGGCCATTGAGGGTGGCCGCATGGAGGCAACCCCTCAGGGGTCGGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGGGTCCCAGTGCCCCCAACAAAGAGCCCACAGGGGACCTCTAGGGGG---GCTCCTGGGACTGCAGAGGAGGCGTTCAGAAACCCACCAACTGACAATGTGGCCCAGCCCTCTACGACAGTCAGCACCGTAGTGTGGGGAACGGAGTCACTCAGCAGCGTCTCTGCTGGAGTCTGCAGCCTCAGCTCCTCCTGGCTTAGGACAAGTCTGACCTGAAGAGAGATGGGGAGTGGGAGATGGGGGGCAGCACTTGGAATCCATCATTTCCCTTATAAAAGCATAGTGGGTTCCCCACTTTTGGTGCCCCAGAGCGGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54044263 427 + 170124641 GAGGAGGCTGCAGTCATTGAGGGTGGCTGCATAGGGGCAATCTCTCAGGGCATAGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGGCTCCCAGTACCCCCAACAAAGAGCCCATAGGGGACCTCTATGGGG---TTTCCTGGGACTGTACAGGAGGCGTTCAGAAATCCATCAACTGACAATGTGGCCCAGCCCTCTAGGACACTCAGCACCATAGTATGGGCAAAGGAGTCACTCAGCAGCTTCTCTGCTGGGGTCTGCAGCTTCAGCTCCTCCTGGCTCAGGACAAATCTGACCTTAAGAGGGATGGGGAGTGGGAGATGGGGAACAGACTTTTGAATCCATCATTTCCCTTATAAAAGCATAGTGCGTTCCCCACACTTGGGGCCCCAGAGTGGAAAACCTGGGATGAGGGCCTCTGGGGCCACTCCT
i rheMac3.chr7                  I 10 C 0
s chlSab2.chr26                  50421163 427 -  58131712 GAGGAGGCTGCAGTCATTGAGGGTGGCTGCATGGAGGCAACCCCTCAGGGGTCGGCTGCTTCCCCTCAGGTAGGGCAGGCCAAGGCTCCCAGTGCCCCCAACAAAGAGCCCATAGGGGACCTCTATGGGG---GCTCCTGCGACTGTACAGGAGGCGTTCAGAAACCCATCAACTGACAATGTGGCCCAGCCCTCTACGACAATCAGCACCATAGTATGGGCAAAGGAGTTACTCAGCAGCTTCTCTGCTGGGGTCTGTAGCTTCAGCTCCTCCTGGCTCAGGACAAATCTGACCTTAAGAGAGATGGGGAGTGGGAGATGGGGAACAGAATTTTGAATCCATCATTTCCCTTATAAAAGCATAGTGCATTCCCCACACTTGGGGCCCCAGAGTGGAAAACCTAGGACGAGGGCCTCTGGTGCCACTCCT
i chlSab2.chr26                 I 10 C 0
s mm10.chr9                      67709582 385 - 124595110 GAGGAGGTTGCGGCCATTGAGAATGGCTGAGTGGAGGCAGCCCCTTAGGGGTCGGCTGATTCCCTTCAGGTAAGGCAGGTCAAGGCTTCCAGAGGAGCCCACGAAGAGCCCGTAGGTGGCCTTGAGGTGGGATGCTCTTGGGATGGGAGCAGAGGTGTTCAACACTCCGTCAACAGACAGCACAGCCCAGCTGTCGGAGACAGTGAGCACTACAGTGTGGGGGGCAGAGTCACTCAGCACGGTGTCTGCTGGCGTCTGCAGCTTTAGCTCCTTCTGTCCCAGGGCAAGTCTGACCTGAAGAGAGACAGAGAGGTCAGGGGTGGGAGTGGC----TGACACTTCTGTCTACCC--------CACACTGAGCCCCCTTCAG-----AACCCGGA---------CTGGGACA-------------------CC
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38478631 426 +  40214260 GAGGAGGTTGCGGCCGTTGACGGTGGCGGCGTGCAGGCAGCCCCTCAGGGGCCGGCTGGCTCCCATCAGGTAGGACAGGCTCAGGCTCCCAGTGCCCCCCAGGAAGATCCCATAGGGGACCTCCAGGGGA---GCTCCCAGGACGGGGGCTGAGGCGTTCAGCAGCCCATCGACGGACAACGAGGCCTCGCTGTCTGACACAGTCAGCTCCACGGAGTGGACGGCGGAGTCGCTCAGCGGAGTCTCAGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGGTGAGTCTGACCTGGGGAGAGACGGAGGGATGGGAGTGGGGA-CAGCACTTCGGACGATCTGCTTCTCCTGTAAGAACATAGTTGGTCGGCCACATTGGAGTCCCCAGAGCAGACGTCCTGGGACAAAGGTTTCTCATGCCACCCCT
i canFam3.chr30                 C 0 I 188
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=361433.000000
s hg38.chr15_KI270850v1_alt        106916 259 +    430880 CTTGCCTTCCTGCCATCTCtttattcatcctccaaacactcaccaaaggaaactctgggccaggcctggatgggctctggggaccctggtgtgaatcagatgtggtccttgcccacaaggaactgacatatagcaagatgctcttctagaa----acccaacctgtatttttaaattctcctcctctttcct-tgagtgagaagcaccagaaatattgtcttggaatctag--atttcacccct-ggaataatgggtaactgagaat
s panTro4.chr15_GL392289_random    181693 259 -    187897 CTTGCCTTCCTGCCATCTCtttattcatcctccaaacactcaccaaaggaaactctgggccaggcctggatgggctctggggaccctggtgtgaatcagatgtggtccttgcccacaaggaactgacatatagcaagatgctcttctagaa----acccaacctgtatttttaaattctcctcctctttcct-tgagtgagaagcaccagaaatattgtcttggaatctag--atttcacccct-ggaataatgggtaactgagaat
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9390887 259 +  10928107 CTTGCCTTCCTGCCATCTCtttattcatcctccaaacactcaccaaaggaaactctgggccaggcctggatgggctctggggacactgatgtgaatcagatgtggtccttgcccacaaggaactgacaTATAGCAAGATGCTCTTCTAGAA----ACCCAACCTGTATTTTTAAATTCTCCTCCTCTTTCCT-TGAGTGAGAAGCACCAGAAATATTGTCTTGGAATCTAG--ATTTCACCCCT-GGAATAATGGGTAACTGAGAAT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95277249 259 + 121039945 CTTGCCATCCTGCCATTTCtttactcatcctccaaacactcaccaaagggaactctgggccaggcctggatgggctctgaggaccctgatgtgaatcagatgtcatctttgcccacaaggaactgacaTACagcaagatgctctcctagaa----atccaacctgtatttttaaattctcctcctctctcct-tgagtgagaggtgccagaaatattgtcttggaaccTCG--ATTTCAGCCCT-GGAATAATAGGTAagtgggaat
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54044690 257 + 170124641 CTTGCCATCCTGCCATCTCtttactcatcctccaaacactcaccaaaggg-actctgggccaggcctggatgggctctggggaccctgatgtgaatcaggtgtgatcctcgcccacaaggaactgacatacagtaagATGCTCTCCTCGAA----ATCCAACCTG-ATTTGTAAATTCTCCTCCTCTTTCCT-CAAGTGAGAGGTGCCAGAAATATTGTCTTGGAATCTAG--ATTTCACCCCT-AGAAAAATAGGTAACTGGGAAT
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50421590 257 -  58131712 CTTGCCATCCTGCCATCTCtttactcatcctccaaacactcaccaaaggg-actctgggccaggcctggatgggctctggggaccgtgatgtgaatcagatgtgatcctggcccacaaggaactgacatacagtaagATGCTCTCCTAGAA----ATCCAAACTG-ATTTTTAAATTCTCCTCCTCTTTCCT-CGAGTGAGAGGTGCCAGAAATATTGTCTTGGAATCTAG--ATTTCACCCCT-AGAAAAATAGGTAACTGGGAAT
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67709967 215 - 124595110 CTTAGCTCCCTATTGTT----------------------TCAACTGGGGAGAGTCAAGGCC------------------------CCAGTGTCGCTCAGAGACTGTCCCTGACC-CTGGGGATTTACACAAAGCAAGGTTCTCCCCTGAAGCAATACTTTGCCTG-GTCTCC---TTCTTCCTCTCTTCTCT-CCAGTGAGCAGTGCCAGAAAACCTACTGTGGGCTCTAGAAAAACTACCTCTGGGAGTAATGTGCACTCTGGGAT
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38479245 211 +  40214260 cccTCCTTCCTGCCACCTCTTTACTTATCCCCCAAACA----------------------CGGGTCCAGATGGGCTCTGGGGTCCCTGATGTGAATCAGA-------------------GAAGTGAC--AGAGCAAGATGCTCTCCTAGGG----ATTCAGTCTGTATGTTT-TACCCTCGCCAGCTTTCCGACGGGGCAGGGCCACCAGACA-ACCACCTTGACCTCCAGAAGATTCACTCTG-GGCATAGAGGGCATCT------
i canFam3.chr30                 I 188 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=25886.000000
s hg38.chr15_KI270850v1_alt        107175 113 +    430880 ccgttgatcagtccccctaagtttggcaaagtttctcgaggtcactgaaggaagccaggctaactgttcagggacagggagcccagg--cagatgctctgtgttct-------gg-----gaaaaaa-
s panTro4.chr15_GL392289_random    181952 118 -    187897 cccttgatcagtccccctaagtttggcaaagtttctcgaggtcactgaaggaagccaggctaactgttcagggacagggagcccagg--cagatgctctgtgttct-------ggaaaaaaaaaaaa-
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9391146 106 +  10928107 CCCTTGATtagtcctcctaagtttggcaaagtttctcgaggtcactgaaggaagccaggctaactgttcagggatagggagcccagg--cagatgctctgtgttct-------ga-------------
i ponAbe2.chr15_random          C 0 C 0
s mm10.chr9                      67710182  88 - 124595110 CCCCCAATGAA-CCCCCTTAGTACGCAAAAGTAGCTTG-GCTCACTG--------TAGGCTAA---------------GAACCCAGA--GAGATGGTCTGTGTTCTCCTTTTGAA-------------
i mm10.chr9                     C 0 I 519
s canFam3.chr30                  38479456  63 +  40214260 -------------------------------------GGGGTCACCG-GGGCAGCTAGGCTCA--------TGGCGGGGAGCCCGATTCCAGATGCTCTGTTTTGA-------GG------------G
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50421847   0 -  58131712 C
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54044947   0 + 170124641 C
e nomLeu3.chr6                   95277508   0 + 121039945 C

a score=101084.000000
s hg38.chr15_KI270850v1_alt        107288 303 +    430880 aaaaaaaaaaaaaagctgcctgacctgtggtggaggaatatctcaaggagagatgaaggacatagttctgtcaccatgacattgacacaagaaatggctctggtatggtgctccca------gatgctagaataggtgatggcagagtat-gggaactgcagaggcagaacactaagaaccatgatcttggagtcctggtatggtgcatctctgtagggatgtggcatcac----------------tacctgcagagctcaacagccatcagcaccagactgcaccacataggtgttcaacagtgacaccttgtggcaatgagca
s panTro4.chr15_GL392289_random    182070 303 -    187897 aaaaaaaaaaaaaagctgcctgacctgtggtggaggaatatctcaaggagagatgaaggacatagttctgtcaccatgacattgacacaagaaatggctctggtatggtgctccca------gatgctagaataggtgatggcagagtat-gggaactgcagaaccagaacactaagaaccatgatcttggagtcctggtatggtgcatctctgtagggatgtggcatcac----------------tacctgcagagctcaacagccatcagcaccagactgcaccacataggtgttcaacagtgacaccttgtggcaatgagca
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9391252 302 +  10928107 ----aaaaaaaaaagctgcctgacctgtggtggaggaagatctcaaggagagatgaaggacatagttctgtcaccatgacactgacaccagaaatggctctggtatggtgctccca------gatgctagaataggtgatggcagagtatggggaactgcagaaccagaacactaagaaccacgatcttggagtcctggtatggtgcatctctgTAGGGGTGTGGCATCAC--------------TGTACCTGCAGAGCTCAACAGCCATCAGCGCCAGACTGCACCATATAGgtgttcaacaatgacaccttgtggcagtgagca
i ponAbe2.chr15_random          C 0 C 0
s canFam3.chr30                  38479519 300 +  40214260 TTAAGTAAAGAAAAGCTCCCTGACCTGGGGTGAGGGA--GCCGCGGGGAGAGGAGA-----ACTGTTCTGTCTCTAGGACTTTGGCACCAGAACTGGGCCTGGGGTGGCCTTGCCACTACTGGACGGCAGGATGGGTGGAGGCAGAGTAC-GGGAAGAGCAGAGCC------CTGGGCACGGCGGCCTTGGGAGCCCAGC--------TCCCC---GGGCTGTGGCATCGCCCTACCTGTCCCGTCACACCTGTCGGGCGGAAGGGCT-CCGGCCCCAGGCTGCACCCGGGCCCCGCtcaacagtgccgcctattggcagagagaa
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67710270 519 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50421847   0 -  58131712 C
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I
e rheMac3.chr7                   54044947   0 + 170124641 C
e nomLeu3.chr6                   95277508   0 + 121039945 C

a score=216522.000000
s hg38.chr15_KI270850v1_alt        107591 198 +    430880 gcaatgacagcagcagactgaccaagccctagtcctcttcccactggggtgtggaaagagatggctgccccaaatttgttaatttg----ttttttttttccttctaaaatagagatggggtctcattgtgtggctcaggccagtcttgaactcctaggctcaagtgatctttccaccttggtctcccaaagtggtgggatt
s panTro4.chr15_GL392289_random    182373 202 -    187897 gcaatgacagcagcagactgaccaagccctagtcctcttcccactggggtgtggtaagagatggctgccccaaatttgttaatttgttttttttttttttccttctaaaatagagatggggtctcattgtgtggctcaggccagtcttgaacacctaggctcaagtgatctttccaccttggtctcccaaagtggtgggatt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9391554 199 +  10928107 gcaatgacagcagcagactgaccaagccctagtcctcttcctactggggtgtggaaggagatggctgccccaaatttgttaatttg---tttttttttttctttctaaaatagagatggggtctcattgtgtggctcaggccagtcttgaactcctagactcaagtgatcttcccaccttggtctcccaaagtggtgagatt
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95277508 195 + 121039945 gcaatgacagcagcagactgaccaaaccctagtcctctccccactggggtgtggaaggagatggctgacccaaatttg------tg-tttttttttttttctttttaaaatagagatggggtctcattgtgtggctcaggccagtcttgaactcctaggctcaagtgatcttctcaccttggcctcccaaagtggtggggtt
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54044947 184 + 170124641 gcaatgacagcagcagactggccaagccctagtcctctccccactggggtgtggaaggagatggctgacccaaa------------------ttttttttcttttaaaaatagagatagggtctcattgtgtggctcaggccagccttgaactcccaggctcaagtgatcttcccgccttggcctcccaaagtggtgggatt
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50421847 184 -  58131712 gcaatgacagcagcagactggccaagccctagtcctctccccactggggtgtggaaggagatggcttacccaaa------------------ttttttttctcttaaaaatagagatggggtctcattgtgtggctcaggccagccttgaactctcaggctcaagtgatcttcccaccttggcctcccaaagtggtgggatt
i chlSab2.chr26                 C 0 C 0
s canFam3.chr30                  38479819  74 +  40214260 gccatggcagcggcaggtggacc--------gtcgcc-------------------------------------------------------------------------------------------------ctcaggccccgcccgtcctctc--------------------ccccgaaccccccaagt-gtggaa--
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      67710270 519 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=30881.000000
s hg38.chr15_KI270850v1_alt        107789 25 +    430880 ataggcataagccactgcacccagc
s panTro4.chr15_GL392289_random    182575 25 -    187897 ataggcataagccactgcacccagc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9391753 25 +  10928107 ataggcatgagccactgcacccagc
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95277703 25 + 121039945 ataggcatgaaccactgcacccagc
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54045131 25 + 170124641 ataggcatgagccactgtacccagc
i rheMac3.chr7                  C 0 C 0
s chlSab2.chr26                  50422031 25 -  58131712 ataggcatgagccactgcactcagc
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67710789 12 - 124595110 atgggtctaagc-------------
i mm10.chr9                     I 519 C 0
s canFam3.chr30                  38479893  9 +  40214260 ----------------gcagccggc
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65355742 12232 + 171882078 I

a score=1955507.000000
s hg38.chr15_KI270850v1_alt        107814 956 +    430880 ctgccccaaatttggactaagaccctgggttcttaaactcttcctggtatggggtaagactcaagtaggagccacaagactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aaat---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTCTCATGGACAG-ACAG------TGGTGCT--GCAGATAAATT------GGTGCAGTGCCACCAGGAT---GCGCAGGGgtcatgggggc-ccaggag---------ggggtctcgccgaggaggaggg--gatgcccacactgaaacttcaaggagagactagagttcggcaggtacagggaatgg---gtgggtcacacacctggcaggag-gagtgtgatgacca--aaggcctggcagcaagtgaccataagatggccaggaactgaaagcagttcagtgcagtcagagcacaaagggccagtgagggcttgtggtgggaaacatggttggaaggagccggtgggcagagccagttcatgaagGATTTACCATTTCTGAGCTGCTGCTGcccatcccacagtggagaacttgagaccccaag--aaaagtgacttacacaaggtca-acagccagctggggttcactcaaagctagacaaggaatctc--gcccc------------aatcccagGGGGACGTCACTCACCTGCAGGTGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGTTGGGACATGGAGAACTGCAGCTGCAGGTCTATGTCAGTCAGAGCCATGGCCACAGTCACCTCCGGGTGGTTCTAACCAAAGAAGGAAGCTGTGTGAGAGAGGGAGCTGTGGTCAAGGCTCAGATTCTTGCCTGGAGGAGGCGAGGTGCTGCAGGGAGGGATGGGTGGGTTGCAGAAAGGGG-------TCCGTGCTGGTGCACCCTCATGGTTCTGCCATACGGTGCTGCCTCTGAGCACTGCCCAGATC
s panTro4.chr15_GL392289_random    182600 940 -    187897 ctgccccaaatttggactaagaccctgggttcttaaactcttcctggtatggggtaagactcaagtaggagccacaagactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aaat---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTCTCATGGACAG-ACAG------TGGTGCT--GCAGATAAATT------GGTGCAGTGCCACCAGGAT---GCGCAGGGgtcatgggggc-ccaggag---------ggggtctcgccgaggaggaggg--gatgcccacactgaaacttcaaggagagactagagttcggcaggtgcagggaatgg---gtgggtcacacacctggcaggag-gagtgtgatgacca--aaggcctggcagcaagtgaccataagatggccaggaactgaaagcagttctgtgcagtcagagcacaaagggccagtgagggcttgtggtgggaaacatggttggaaggagctggtgggcagagccagttcatgaagGATTTACCATTTCTGAGCTGCTGCTGcccatcccacagtggagaacttgagaccccaag--aaaggtgacttacacaaggtca-acagccagctggGGTTCACACAAAGCTAGACAAGGAATCTC--GCCCC------------AATCCCAGGGGGACGTCACTCACCTGCAGGTGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGTTGGGACGTGGAGAACTGCAGCTGCAGGTCTATGTCAGTCAGAGCCATGGCCATAGTCACCTCCAGGTGGTTCTAACCGAAGAAGGAAGCTGTGTGAGAGAGGGAGCTGTGGTCAAGGCTCAGATTCTTACCTGTAGGAGGCGAGGTGCTGCAGAGAGGGATGGGTAGGTTGCAGAAAGGGG-------TCCGT--------------ATGG--CTGCCATACGGTGCTGCCTCTGAGCACTGCCCAGATC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9391778 959 +  10928107 ctgccccaaatttggactaagaccctgggttcttaaactcttcatggtatgggggaagactcaagtaggagccacaagactccttgataataaagcttgtggtgtcctgaaggatgaaatggaa--aaAT---GAAGCTG-----AGGCAGTACTTGTGCTGTTACTGTCGTGGACAG-ACAG------TGGTGCT--GCAGAGAAACT------GGTGCAGTGCCACCAGGAT---GTGCAGGGgtcatgggggc-ccaggat---------ggggcctcgcccaggaggaggg--gatgcccacactgaaacttcaaggagaggctagagttaggcaggtgcagggaatgg---gtagggcacacacctggcagaag-aagtgtgatgacca--aaggcctggcagcaagtgaccataagatggctaggaactgaaagcagttcagtgtagtcagagcacaaagggccagtgagggcttgtggtgggaaacatggttggagggagccagtgggcagagccagttcatgaagGATTTACCATTTCTGAGCTGCTGCTGcccatcccacagtggagaacttgagaccccaagaaaaaagtgacttacacaaggtcacacagccagctggggttcactcaaagctagacaaggaatctc--gcccc------------aatcccagGGGGACGTCACTCACCTGCAGGTGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTACTGCCAGGAGAAGGAGGGCTTCGAGCTGGGACGTGGAGAACTGCAGCTGTAGGTCTATGTCAGTCAGAGCCATGGCCACAGGCACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTGTGAGAGAGGGAGCTGTGGTCAAGGCGCAGATTCTTGCCTGGAGGAGGTGAGGTGCTGCAGAGAGGGATGGGTGGGTTGCAGAAAGGGG-------TCCGTGCTGGTGCACCCTCATGGTTCTGCTATATGGTGCTGCCTCTGAGCACTGCCCAGATC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95277728 965 + 121039945 ctggcacaaatttggaataagaccctgggttcttaaactcttcatggcttaggggaagacccaagaa--agccacaagactccttgctaacaaagctcgtggtgtcttgaaggatgaaatggaa--aaatgaggaagccg-----aggcagtactggtgcTGTTACTGTTGTGGACAG-ACCG------TGGTGCT--GCAGAGAAATT------GGTGCAGTGCCACAGGGAT---GCACAGGGgtcatgggggc-ccaggag---------ggggcctagcccaggaggaggg--gatgcccacactaagacttcaaggagaggctggagttgggcatgtgcagggaacgg---gagaggcaagcacctggcagaag-gagtgtac--atcc--agagcctggcagcaagcgactgtaagatggccaggaactgaaagcagttcagtgcggtcagagcacaaaggaccagcgaggggttgtggtgggaaacatggttggagggagccagtgggcagagccagttcatgaagGATTTACCATTTCTGGGCTGCTGCTGcccatcccacagtggagaacttaagaccccaagataaaagtgacttacacaaggtcacacggccagctggggttcactcaaagctagagaaggaatccc--accccgaatcccgccgagatctcAGGGGGACGTCACTCACCTGCAGGCGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCC---AGAAGGAGGGCTTCGGGCTGGAATGTGGAGAACTGCAGCTGTAGGTGTTTGTCAGTCAGAGCCGTGGCCACAGGCACCTCCAGGTGGTTCTCACCTAAGAAGGAAGCTGTGT--GAGAGGGAGCTGTGGTCAAGGCTCAGACTCTTGCCTGGAGGAGGCGAGGTGCCGCAAAGAGGGAGGGGTGGGTTGCAGAAAGGGG-------TCCATGCTGGCGCAACCTCATGGTTCTGCTATATGGTGCTGCCTCTGAGCACTGCCCGGGTC
i nomLeu3.chr6                  C 0 I 1289
s rheMac3.chr7                   54045156 972 + 170124641 ctggcacaaatttggaataagaccctgggttctt-aactcttcatggtttgggaaaagactcaagaaagagccacaagactcctcactaacaaagcttgtggtgtcttgaaggatgaaatggaa--aaatgaggaagctg-----aggcagtactggtgcTGTTACTGTCGTGGACAG-acag------tggtgct--gcagagaaatt------ggtgtagtgccacagggaa---gcacaggggtcgtggggac-ccaggag---------ggggcctcgcccaggaggaggg--gatgtccacactgagactttaaggagaggctggagttaggcatgtgcagggaatgg---gtgaggca-gcaccaggcagaag-gagtgtggtgacca--aaggcctggcatcaagcgactgtaagatggccgggaactgaaagcagttcagtgcggtcagagcacaaagggccagcaagggcttgtggtgggaaacatggttggagggagccagtgggcagagccaattcatgaaggatttgccatttctaggctgctgCTGcccatcccacagtggagaacttgagaccctaagataaaagtgacttacacaaggtcacacagccagctggggttcactcaaagctagagaaggaatccc--accctgaatcccgcccgGATCCCAGGGGGACGTCGCTGACCTGCAGGCGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGCTGGGACGTGGAGAACTGCAGCTGTAGGTCTATGTCGGTCAGAGCCGTGGCCACGGACACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTGTGAGAGAGGGAGCTGTGGTCCAGGCTCAGATGCTTGCCTGGAGGAGGTGAGGTGCCACAAAGAGGTACCGGTGGGTTGAAGAAAGGGG-------TCCATGCTGGCGCACCCTCATGGTTCTGCTATATGGTGCTGTCTGTGAGTACTGCCTGGATC
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65367974 955 + 171882078 ctgccccaaatttggactaagaccctgggttcttaaactcttcatggtatgggggaagactcaagaaggagccacaagactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aaat---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTGTCGTGGACAG-ACAG------TGGTAGT--GCAGAGAAATT------GGTGCAGTGCCACAGGGAT---GCACAGGGgtcatgggggc-tcaggag---------ggggcctcgcccaggaggaggg--gacgctcactctgaaacttcaaggacaggctagagttaggcaggtgcagggaatga---gtgaggcatgcacctggcagaag-cagtgtagtgacca--aaggcctggcagcaagtgaccataagatggccaggaactgaaagcagttcagtgcagtcagagcacaaatggccagggagggcttgtggtgggaaacatggttggagggagctggtgggcagagccagttcaggaagGATTTACCATTTCTGGGCTGCTGCTGcccatcccatggtggagaacttgagaccccaagataaaagtgacttacacaaggtcacacagccagctggggt----tcaaagctagagaaggaatctc--acccc------------catcccagGGGGATATCACTCACCTGCAGGCATCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCAGGTTGGGAGGTGCAGAACTGCAGCTGTAGGTCTATGTTGGTCAGAGCCGTGGCCACAGGCACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTGTGAGAGAGGGAGCTCTGGTCAAGGCTCAGATTCTTGCCTGGAGGAGGCGAGGTGCCATAGAGAGGGACGGGTGGGTTGCAGAAAGGGG-------TTCATGCTGGTGCACCCTCATGGTTCTGCTATATGGTGCTACCTCTGAGCACTGCCCAGATC
i macFas5.chr7                  I 12232 C 0
s chlSab2.chr26                  50422056 965 -  58131712 ctggcacaaatttggaataagaccctgggttctt-aactcttcatggtttgggagaagactcaagaaagagccacaagactcctcactaacaaagcttgtggtgtcttgaaggatgaaatggaa--aaaggaggaagctg-----aggcagtactggtgcTGTTACTGTCGTGGACAG-GCAG------TGGTGCT--GCAGAGAAATT------GGTGTAGTGCCACAGGGAT---GCACAGGGgtcctggggac-ccaggag---------ggggcctcacccaggaggaggg--gatgtccacactgagacttcaaggagaggctggagttaggcatgtgcagggaatgg---gtgaggcacgcacctggcagaag-gagtgtagtgacca--aaggcctggcatcaagcgactgtaagatggccgggaactgaaagcagttcagtgcggtcagagcacaaagggccagcaagggcttgtggtgggaaacgtggttggagggagccagtgggcagagccagttcatgaaggatttaccatttctaggctgctgCTGCCCATCCCACAGTGGAGAACTTGAGACCCTAAGATAAA--------ACACAAGGTCCCACAGCCAGCTGGGGTTCACTCAAAGCTAGAGAAGGAATCCC--ACCCTGAATCCCACCCAGATCCCAGGGGGACGTCACTGACCTGCAGGCGTCCAGAGTAGAGCTGCAGCAAAAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGCTGGGACGTGGAGAACTGCAGCTGTAGGTCTATGTCGGTCAGAGCTGTGGCCACAGGCACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTATGAGAGAGGGAGCTGTGGTCCAGGCTCAGATGCTTGCCTGGAGGAGGTGAGGTGCCACAAAGAGGTACCGGTGGGTTGAAGAAAGGGG-------TCCATGCTGGCGCACCCTCATGGTTCTGCTATATGGTGCTGTCTGTGAGTACTGTCTGGATC
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67710801 877 - 124595110 ----------------ctaagatcctggattcctaaacattttatgattagggggaagactcaagagacagctaaatgaccccttg-----------------gtcttaaagcatgcaataagagcaaaa---gagggtggtggtagatgataaaggcattgttactatctcagattgtaccA------CCTTATT--ACAGAGGA----------------------CGGGGG---GAGGGGGAGTCCTAG-----TCAGGTGAGTAGAACAGGGATACTACCTGGGAGCAGGGATACTCCTCACACATAGATGTCAAGGAGAGG---GGACTGGTCAGGCATGGGGAAGAGAAAGAAAGGCAGGCAAAAGAGAAAAGCCAGGGTAGTAGTGAGGAAAGCCTGTTAGTCAGATACTACGAGGAGGT---GGACAGAGAA-AGCTCAGTCCAG-----------ATGGTCAACTAGGGGCGACGAAGAGAAGTGAGACCCGAGACAGCTCGTAGGCAGAGCCACTGCACCAGGAGCTCAC----TCTGGGAAGTTGCTAGCCA-CCCATGGCAGACAAACCAAGACCCAAGGGCAGAGGTGACTTGCATGAGGTTGCACAGCCAAAGGCGAGGCCTCCCAACCTGCAGAAGGGATCTCTAGCCCT------------GTTCCC--GGGTGTGCCACTCACCTGGAGGCATCCTGAGTGGAGCTGGAGCAAGAGATGGTCATCTTGGCCTGCTGCCAAGAGGAGCAGGGCTTCGGGCTGGGATGTGGAGAACTGGAGCAGCAGGTCTACTCTGGTCAGAGCTGAGGGCACGGGCACCTCCAGGTGGTTCTCCCCGAAGAAGGAGGCTG-GTGAGAGAGGGAGCTGTGGTCAAGG-TCAGGCTCCGGCCAGGAGGAGGTTAGGGACCGTAGAGACAGACAGATGGGCTACAGGGGAGGGAAGGGCTTCTATGTTGACATGCCC-CATGGCTCT-----------------------------------
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38479902 829 +  40214260 -tttcccgaatttggacggagacctcaggttctcaaattcgttatggttaagggggagcctcagg--ggagccaggaggctccttgctgataaagctagcgg-ggctggcaggacgaaatggga--aaatggagaggctt-----tggcgatactggt--CGTTACCATCACGGACAG-ATGGGGtgaccggtgctcagcaggaggctcacaggggctgcagggcc--caggatagagcacccagcccaggggagtgccagggg---------gtaggtacctcctgggggaagg--gatgtctacgctgggacttgaaggCGAGGC--------GGGGCGTGCGGGGAGCGA---GAG---------CCTGGCTGGAC-CAGCG-----------CAGGCC-----------------------------------------------GCAGTGAGGG------GGGGCGGCCAGGGCTGGTGGTGGGCAGTGTGGGTGGAGG--GCTGCGGGGCACAGCCGGCGCACCAGGGAGTCACACCTTGGGAGACGCTGTCCTTCACCTCGTGGCAGGGACCTAGAGACCTCGGGGCGAAAGGGGCTCACACAAAGTCA-----CCGGCTGGGGGCCGTGCCAAGCTAG---AGGGGTCCA--G---------------------CAGGGAGAGGCCACTGACCTGCAGGTATCCGGAGTGGAGCTGCAGGAGGAGGTGGTCAGCCTGGCCTGCTGCCAGGAGGAGCAGGGCTTCGGGCTGGGACGTGGAGAATTGTAGCCGGAGGTCTATGTTGCTCAGAGCTGTGGTCACCGGCACCTGCAGGTGGTTCTCCCCAAAGAAGGAGGCTGTGTGAGAGACGGAGCTGGG--------TCAGTCCCTTGCCTGGAGGAGGAGAGGTGCTGCGGA-----------------CGATGCGGGT-------TTTGTGCTGGCGCAGCTTCACGGTCCTG---------GCTG-------GCACTGCCCC----
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=1643523.000000
s hg38.chr15_KI270850v1_alt        108770 776 +    430880 CCAGCATTTCCTTGGTCCTGGCACCAGAAGGCACAGCCTCACCTTGTGTCCAGCCCAGACCTTGACTTGGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCAGAGGCCTCTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCAGGTCTGGCTCCCCGACCTGGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCTGAGGAATGGAGTTTCTGGAGAATCACCACCAGGCCAGATCGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCCGTG-CCATGCCCCACCTCCATGGGTTGGCTGGGGCCACAGCTGGGATCTGGGGGTGATGTCA----GTGCAGCCCACCTATCCCTGCTTCTCCCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGGGCAGG------AGCTTATTGGCCTGAGTTTGCCAAGGAGTAAAGGCTCTCAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCACTACCCCTGCTGTTGCTTCCTGCTAGAGAGCTATTCACAGTCCCCGCTGAGCAGTCAGATCCGGCCCCATTGTTTCC-ACCGTGGCCAAGGAACCAGGGATGAGAACAGCTCAGCTCCCAACCTCCCCAGGCCACCACTCAGTCTGAGGCTG------AAGACAGGGCCTAGAAGGGGCTGAGGGTCTGCTGAG
s panTro4.chr15_GL392289_random    183540 776 -    187897 CCAGCATTTCCTTGGTCCTGGCACCAGAAGGCACAGCCTCACCTTGTGTCCAGCCCAGACCCTGACTTGGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCAGAGGCCTCTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCAGGTCTGGCTCCCCAACCTGGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCAAGGAATGGAGTTTCTGGAGAATCACCCCCAGGCCAGATCGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCCGTG-CCATGCCCCACCTCCATGGGTTGGCTGGGGCCACGGCTGGGATCTGGGGGTGATGTCA----GTGCAGCCCACCTATCCCTGCTTCTCCCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGGGCAGG------AGCTTATTGGCCTGAGTTTGCCAAGGAGTAAAGGCTCTGAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCACTACCACTGCTGTTGCTTCCTGCTGGAGAGCTATTCACAGTCCCCGCTGAGCAGTCAGATCCGGCCCCATTGTTTCC-ACCGTGGCCAAGGAACCAGGGATGAGAACAGCTGAGCTCCCAACCTCCCCAGGCCGCCACTCAGTCTGAGGCTG------AAGACAGGGCCTAGAAGGGGCTGAGGGTCTGCTGAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9392737 776 +  10928107 CCAGCATTTCCTTGGTCCTGGCACCAGAAGGCACAGCCTCACCTTGTGTCCAGCCCAGACCTTGACTTTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCAGAGGCCTCTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTACCAGGTCTGGCTCCCCGACCTGGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCACCCCCAGGCCAGATTGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCTGTG-CCATGCCCCACCTCCACGGGTTGGCTGGGGCCACAGCTGGGATCTGGGGGTGATGTCA----GTGCAGCCCACCTATCCCTGCTTCTCCCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGGGCGGG------AGCTTATTGGCCTGAGTTTGCCAAGGAGTAAAGGCTCTGAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATTACCCCTGCTGTTGCTTCCTGCTAGAGAGCTATTCACAGTCCCTGCTGAGCAGTCAGATCCAGCCCCATTGTTTCC-ACCGTGGCCAAGGAACCAGGGATGAGAACAGCTGAGCTCCCAACTTCCCCAGGCCACTACTCAGTCTGAGGCTG------AAGACAGGGCCTAGGAGGGGCTGAGGGTCTGCTGGG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95279982 779 + 121039945 CCAGCATCTTCTTAGTTCCGGCACCAGAAGGCACAGCCTTACCCTGTGTCCAACCCAGACCTTGACTTTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGGCTCCTCCTTGGAGGAAGTTCCTGGACCCAGAGGCCTCCGCCAGCTCTGACTCGCCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCGGGTCTGGCTCCCCAACCCGGCCCAAAGGGAAC-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAAGAATGGAGTTTCTGGAGAATCACCCCCAGTCCAGACTGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCGGTGCAGCGCCTGCTGTG-CCATGCCCCGCCTCCATGGGCTGGCTGGGGCCACGGCTGGGATCTGGGGGTGGTGTCA----GTACGGCCCACCTATCCCCGCTTCTCTCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGGGAGGG------AGCTTATTGGCCTGAGTCTGCCAAGGAGCAAAGGCTCTGAGGCCAGATGGAGACCATGTGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATTACCCCTGCTATTGCTTCCTGCTGGAGAGCTATTCAGAGTCCCCGATGAGCAGTCAGATCTGGCCCCATTGTTTCC-ACCATGGCCAAGGAACCAGGGATGAGAACAGCTGAGTTCCCAACTTCCCCAGGCCACTACGCAGGCTGAGGCTG------AAGACAGGGCCTGGAAGGGGCTAAGGGTCTGCTGGG
i nomLeu3.chr6                  I 1289 I 10
s rheMac3.chr7                   54046128 773 + 170124641 CCAGCATCTTCTTGGTCCTGGCACCAGAAGGCACAGCCTCACCTTGTGTCCAG-CCAGACCTTGACTTTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTAGAG---GTTCCTGGAGCCAGAGGCCTTTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTTCCTCCCGGGTCTGGGTCCCCTACCCC-CCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGCTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCACCCCCAGTCCAGACTGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGTGCCCGCCGTG-CCATGCCCCGCCTCCATGGATTGGCTGGGGCCACGGCTGGGATCTGGTGGAGGTGTCA----GCATGGCCCACCTATCCCCGCTTCTCTCTCAGGCCATCCTTCCAGCTGCCATTGAGGGTGGGGGCGGG------AGCTTATTGGACTGAGTCTGAGAAGGAGCAAAGGCTCTGAGGCCAGATGGAGACCATGTGCAGGGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATT-ACCCTGCTATTGCTTCCTGCTGGAGAGCTATTCACAGTCCCCGATGAGCAGTCAGATCCGGCCCCATTGTTTCC-ACCATGGCCAAGGAACCAGGGACGAGAACAGCTGAGCTCCCAACTTCCCCAGGCCACCACGCAGGCTGAGGCTG------AAGACAGGGCCTGGGAACGGCTGAGGGTCTGCTGGG
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65368929 776 + 171882078 CCAGCATTTCCTTGGTCCTGGCACCAGAAGGCACAGCCTCACCTTGTATCCAGTCCAGACCTTGACTCTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTAGAG---ATTCCTGGAGCCAGAGGCCTCCGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCAGGTCTGGCTCCCTGACCCAGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCACCCCCAGTCCAGACTGATTCCTGCTGATATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCCGTG-CCATGCCCTGCCTCCATGGATTGGCTGGGGCCATGGCTGGGATCTGGGGATGGTTTCA----GTGGAGCCCACCTATCCCCGCTCCTCTATCAGGTCATTCTTTCAGCTGCCATTGAGGGTGGGGGTGGG------AGCTTATTGGCCTCAGTTTGCCAAGGAGCAAAGGCTCTGAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATTAACCCTGCTACTGCTTTCTGCTGGAGAGCTATTCACAGTCCCTGCTGAGCAGTCAGATCCAGCCCCATTGTTTCC-ACCATGGCCAAAGAACCAGGAATGAGAACAGCTGAGCTCCCAACTGCCCCAGGCCACCACTCAGGCTGAGGCTG------AAGACAGGGCCTAGGAGGGGCTGAGGGTCTGCAGGG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50423021 773 -  58131712 CCAGCATCTTCTTCGTCCTGGCACCAGAAGGCACAGCCTCACCTTGTGTCCAG-CCAGACCTTGACTTTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCGGAGGCCATTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTTCCTCCCGGGTCTGGGTCCCCTACCCC-CTCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCATCCCCAGTCCAGACTGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTTCTGTGCAGTGCCCGCCGTG-CCATGCCCCGCATCCATGGGTTGGCTGGGGCCACGGCTGGGATCTGGTGGAGGTGTCA----GCATGGCCCACCTATCCCCAGTTCTCTCTCAGGCCATTCTTCCACCTGCCACTGAGGGTGAGGGCGGG------AGCTTATTAGCCTGAGTCTGCCAAGGAGCAAAGGCTCTGAGGCCAGATGGAGACCATGTGTAGGGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATT-ACCCTGCTATTGCTTCCTGCTGGAGAGCTATTCACAGTCCCCGATGAGCAGTCAGATCCAGCCCCATTGTTTCC-ACCATGGCCAAGGAACCAGGGATGAGAACAGCTGAGCTCCCAACTTCCCCAGGCCACCACGCAGGCGGAGGCTG------AAGACAGGGCCTGGGAACGGCTGAGGGTCTGCTGGG
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67711678 598 - 124595110 -------------------------ATGTGGCACAGCCT--------------------------------AGGGGCTCG----TTAAGATTCCCA-CTATTCAAGTTTGCTT-----GG---GTTCCTGAAGCCACAGGTTCCCGCCA--------------CCTTTGGGCCCCAGC-GAATGTCCATCCTGGATCTGGTCTCTC-------CCTA------------TCTTGTCATGATCATCTGG--------------------------------TGGGGGGGACTCTCACAATGAAGGCTGATCCCTGACCACAGT-CTTCTCCTAGG-----------GTGGGCTCCT----------TGCCACGACCGCACTTTATCTCTGTGT-TTTGCTG----------TGGAGCCTGATGGTGGTGGTA-----TGCAGGCAGGTCATTTCTTCT-----------CTATTTTCTTAG-TGCCTGTAGGGACGGGGTGGGGTGGGGCCGTTTATTGCTCAGAGCCTGCCAAGGAGCAAAGGCTCCCAGGCC-GATGGGAAGCACGTGCGGTGTCAGACTCAAAGCCGGCCAAACTGTGCTCCACC-ACTCCGCAATTGCTTCCTGCCTCAGCACCACCACGGGTCCCTGGTGAGTACTCACATCCGGCCTCTCTGTTTCCAAACATGCCTAAGGAGCCAGGGAAGACAGCAGCAGAGATCCC--CTTCCCTA-------ACCCAAGCCAGGGATGTCTCCAAATACAAGGCTGGGGACGCACTACAGGCCTGC----
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38480731 717 +  40214260 --CTCACCTGTCCAGTCCTGGTGCCGGAAGGTGCAGTCTCACCTTGTGTGTATCCCAGGCCTTAGCTCCAAAGGAGGCCAGACCT----ATTCCAAGCAAC-CAGGTTTCCTCCTCAGGA---GTTCCTGGGGCCTGGGCCCTCTGACAGCTCTGGCTCTCCTCCCCGGGGCCCCAGAGGATTCTCCATCCTGGGCCGAGTTCCTC--TTGGGCCTAATGGAAAACCATCCCTGGCCGGGTCACCTGGCCTGGTGGTCTTTGCCCCCAGGAATGGGATTCCAGGAGGATCATCCCTACCCCAAACGGATGCCTG------------------AGTGCCC-CATGCTTTGGTTCTCGGACAACGCTTTCCATG-CCATGCCCTCCCTCTGTGGGTAGGCTGGGGCCACGGCCGGGGCCTGGCGGTGGTGCTGAAACAGGCAGCCCACCCGTCCCCACTTC-------------TCTCCCAGCTGTCTTTGGAGTAAGGGTGCAG---------TCGCCAGCCCGAGTCCACCAAAGAGCGAAGGCGCTGAGGCCAGATGGAGACCACGTACTG----GACC-CCAAATGGGCCCCAGCTTCCTGCATC-ACGCCG-TATTGCTTCCTGCCGCAAGGCTGCTGATTGTCCCTGGGGGGCAGTCAGATCCGGCCCTGTTGTTCCC-ACGATGGCTGGGGAGCCATAGCCGACTACAGCTGG--------CTTTTCCCAGC-----CTGGGTCTGTAGCTA------GAGACAAGGCCTGGGA-GGGTGGGAGGTTTGCTGAG
i canFam3.chr30                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=1081124.000000
s hg38.chr15_KI270850v1_alt        109546 743 +    430880 CAGGCCAAAGAGGGCCTCCCCAGGCAGAAGGCCATGTCTGGGCTTGCCTGGGATTAGTGGTTCTTATGCAGGGCCTGTTCTGTCCCACACTGGGACTCCTCCTC-TTTTGAGTTGCTGCT---TCCTCCAGGCAGTTTCCCCAAATTAGCCTC-CCTGACTTCCAACCCGAT--GCCATAATTTCTGGTCTATGCCTTTTGCGGTGATAAGAGCCAAATATAACTTTAACTTTG-CCTGCAGATGTCCAGGGCT-----GGGGGGCAGGCAAACACAGGTTAAAAACTGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCAAGAACAAGCACAGGCTGATGGCCTTGATGGGG-TGATCCAGCACCGACCTCACATGCACTGGTCCCTAGCCAGCCTGAGCCAGCTGCCATCTGCTCGAGGAAGTAGCTTCAGCCATTGGAGGAGTTGGAGGTTTGTATACCCTCAGGGCAGCCAGTCCCACCTGGAGGGATATCCAGGAAAGAT----CCCGTAAGAGCCCCTC---GGGTTGAGTT-AAATCCCCTCTAGTTATCCCCTCCTCCTGCCAGC----ACT-GCTGGCAACACCAGCACCTTGGCTGGGAAGCTAAGGGAATCAAGCAAGCCCCGC-AGACCATCTGCACGGGGGTGGCCCAGCAGTCTCAGCAGGCACAGCACAG---------------------------------------------------------------------------------CTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGCCAGCTAC-TGGGGTGCCTTATCTGCAAAGACATTGATTCCT
s panTro4.chr15_GL392289_random    184316 741 -    187897 CAGGCCAAAGAGGGCCTCCCCAGGCAGAAGGCCATGTCTGGGCTTGCCTGGGATTAGTGGTTCTTATGCAGGGCCTGTTCTGTCCCACACTGGGACTCCTCCTC-TTTTGAGTTGCTGCT---TCCTCCAGGCAGTTTCCCCAAATTAGTCTC-CCTGACTTCCAACCCGAT--GCCATAATTTCTGGTCTATGCCTTTTGCGGTGATAAGAGCCAAATATAACTTTAACTTTG-CCTGCAGATGTCCAGGGCT-----GGGGGGCAGACAAACACAGGTTAAAAACTGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCAAGAACAAGCACAGGCTGATGGCCTTGATGGGG-TGATCCAGCACCGACCTCACATGCACTGGTCCCTAGCCAGCCTGAGCCAGCTGCCATCTGCTCGAGAAAGTACCTTCAGCCATTGGAGGAGTTGGAGGTTTGTACACCCTCAGGGCAGCCAGCCCCACCTGGAGGGATATCCAGGAAAGAT----CCCGTAAGAGCCCCTC---GGGTTGAGTT-AAATCCCCTCTAGT--TCCCCTCCTCCTGCCAGC----ACT-GCTGGCAACACCAGCACCTTGTCTGAGAAGCTAAGGGAATCAAGTAAGCCCCGC-AGACCATATGCGCGGGGGTGGCCCAGCAGGCTCAGCAGGCACAGCACAG---------------------------------------------------------------------------------CTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGCCAGCTAC-TGGGGTGCCTTATCTGCAAAGACATTGATTCCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9393513 744 +  10928107 CAGGCCAAAGAGGGCCTCCCCAGGCAGAAGGCCATGTCTGGGCTTGCCTGGGATTAGTGGCTGTTATGCAGGGCCCGTTCTGTCCCACACTGGGACTCCTCCTC-ATTTGAGTTGCTGCT---TCCTCCAGGCAGTTTCCCCAAATTAGCCTC-CCTGACTTCCAACCCGCT--GCCATAATTTCTGGTCCATGCCTTTTGTGGTGACAAGAGCCAAATATAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT----GGGGGGGCAGACAAACATAGGTTAAAAACCGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCAAGAACAAGCACAGGCTGATGGCCTTGATGGGG-TGATCCAGCACCGGCCTCACATGCACTGGTCCCTAGCCAGCCTGAGCCAGCTGCCATCTGCTCGAGGAAGTAGCTTCAGCAATTGGAGGAGTTGGAGGTTTGTACACCCTAAGGGCAGCCAGCCCCACCTGGAGGGATATCCAGGAAAGAT----CCCGTAAGAGCCCCTC---GGGTTGATTT-AAATCCCCTCTAGTTATCCCCTCCTCCTGCCAGC----ACT-GCTGGCAACACCAGCACCCTGTCTGGGAAGCTAAGGGAATCAAGTAAGCCCCAC-AGACCTTCTACACAGGGGTGGCCCAGCAGGCTCAGCAGGCACAGCACAG---------------------------------------------------------------------------------CTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGCCACCTAC-TGGGGTGCCTTATCTGCAAACACATTGATTCCT
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54046901 740 + 170124641 CAGACCAAAGAGGGCCTCGCCAGGCAGAAGGCCATACCTGGGCTTGCCTGGGGTTAGTGGTTCCTATGCAAGGCCCATTCTGTCCCACACCGGGACTCCTCCTC-TTTTGAATTGCTGCT---TCCTCCAGGCAGTTTCCCCAGATTAGCCTC-CCTGACTTCCAACCCGCT--GCCACAATTTCTGGTCTATGCCTTTTGTGGTGATAAAAGCCAAATATAACTTTGACTTTG-CCCGCAGATGTCCAGGGCT-----CGGGGACAGACAAACACGGGTTAAAAACGGTGATTCATCCCTCTTGGGTTTCCCTCAAACCCCGAGAGCAAGCACAGGCTGACGGCCTTGATGGGGATGATCCAGCACCAGCCCCACATGCGCTGGTCCCTGGCCAGCCTGAGCCAGCTGCCATCCGCCTGAGAAAGCAGCTTCAGCCATTGGAGGAGTCGGAGATTTGTACACCCTAAGGGCAGCCAGCCCCACTGGGAAGGATGTCCAAGAAAGAT-----CCGTAAAAACCCCTT---GGGCTGAGTT-AAATCCCCTCTAGTTAT---CTCCTCCTGCCAGT----ACT-GCTGGCAACACCAGCACCTTGTCTGGGAAGCTAAGAGAATCAAGCGAGCCCTGC-AGACCATCTGCATGGAGGCGGCCCAGCAGGCTCAGCAGGCCCAGCACAG---------------------------------------------------------------------------------CTCGGTACCAGCAAGGGGCAGACCAGGGAACT-----GCAGGTGGCGGCCACCTAC-CGGGGTGCCTTATCTGCAAAGACATTGATTCCT
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65369705 747 + 171882078 CAGGCCAGAGAAGGCCTCACCAGACAGAAGGCCATGTCTGGGGTTGCCTGGGGTTAGTGGTTCCCATGCAAGGCCTGTTCTGTCCCACACTGGGACTCCTCCTC-TTTTGAGTTGCTGCTTCCTCCTCCAGGCAGTTTCCCCAAATCAGCCTC-CCTGACTTCCAACCTGCT--GCCATAATTTCTGGTCTATGCCTTTTGTGGTGATAAGAGCCAAATACAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----AGGGGGCAGAAAAACACAGGTTAAAAACCGTGATTCATCCCTGTTGAGTTTCCCTCAAACCCCAAGAACAAGCACAGGCTGATGGCCTTGATAGGG-TGATCCAGTACTGGCCTCACATGTGCTGGTCCCTGGCCAGCCTGAGCCAGCTGTCATCTGTTCCAGGAAGTAGCTTCAGCCATTGGAGGAGCTGGAGATTTCTACGCCCTAAGGGCAGCCGACCCCACCTAGAGAGATGTCCAGGAAAGAT----CCCGTAAGAGCCCCTC---GGGCTGAGTT-AAATCCCCTGTAGTTATCCCCTCCTCCTGCCGGTGGGCACT-GCTGGCAACAC---CACCATGTCTGGGAAGCTAAGGGAATCAAGTAAGCCCCGC-AGACCATCTGCGTGGGGGCGgcgcagcaggctcagcaagcacagcacag---------------------------------------------------------------------------------cTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGCCACCTAC-TGGGGTGCCTTATCTGCAAAGACATTGATTCCT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50423794 739 -  58131712 CAGGCCAAAGAGGGCCTCACCAGGCAGAAGGCCATGCCTGGGCTTGCCTGGGGTTAGTGGTTCTTATACAGGGCCCATTCTGTCCCACACCGGGACTCCTCCTC-TTTTGAATTGCTGCT---TCCTCCAGGCAGTTTCCCCAGATTAGCCTC-CCTGACTTCCAACCCGCT--GCCACAATTTCTGGTCTATGCCTTTTGTGGTGATAAGAGCCAAATATAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----CGGGGACAGACAAACACGGGTTAAAAACGGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCGAGAGCAAGCACAGGCTGACGGCCTTGATGGGG-TGGTCCAGCACCCGCCCCACATGGGCTCGTCCCTGGCCAGCCTGAGCCAGCTGCCATCGGCCTGAGATAGCAGCTTCAGCCATTGGAGGAGTCGGAGATTTGTACACCCTAAGGGCAGCCAGCCCCACCAGGAAGGATGTCCAAGAAAGAT-----CCGTAAAAACCCCTT---GGGCTGAGTT-AAATCCCCTCTAGTTAT---CTCCTCCTGCCAGC----ACT-GCTGGCAACACCAGCACCTTGTCTGGGAAGCTAAGGGAATCAAGAGAGCCCTGC-AGACCATCTGCATGGAGGTGGCCCAGCAGGCTCAGCAGGCCCAGCACAG---------------------------------------------------------------------------------CTCGGTACCAGCAAGGGACAGACCACGGAACT-----GCAGGTGGCGGCCACCTAC-CGGGGTGCCTTATCTGCAAAGACATTGATTCCT
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67712276 598 - 124595110 ---------GAGGGTCTCCTCAGGCATCAGGACAGATACGGTC-TACCCAGGGTTGGTGAGCACTGTGCAGG--CCACTTTGGACCACAGTGGGAACCTCC----------------------TCCTTCAGGCAGTTCCCTAATATTAGCTTT-CTTCAGTCTCCAGCAGTTTCTCCACCATTTCTGACCCAT---TCTTGTGGTGGT----------TAGAACCTCGAC--TG-CATGCAGATATCCAGTGTT------GGGGAAAGATG---GCAGG--AGAAAAGGAGACTCATCCCAGTCAGGCCTCTTTGAAATTGCAGAGGACAGT-CAGGCTGATGGCTCTGACAAAGATGTTCTGGCATCAGTCACACTAGTGCTGGGCCCCGGCCAGCCCAAGCCAGCTGACAT------GACAGAGCAGCATCAGCCACTGCAGGGGTC---------TGCACCTTT-------TCTGTCCCA---GGAGAGATGGCCAAGAAAGAT----------AATGCTGTTCTCAGGGCTGAGCTGAAATCCTCCCTAGTG-----------------------ACT-CCTG------------------------AGTTAAAAGGATGTCATGAGCAC--A-AAGCCACTTGCCCAG-------------GGCTCTGTGGGCCCAGCACAT---------------------------------------------------------------------------------CTT-GTGTCGTGGAACCTCAGACCGGGACACTGCTCAGCAAGCAGTAGGAGCTTGTAGGGGGTGCCGTGTCTGC----------------
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38481448 726 +  40214260 AGGGCCA--GAGGGCCTC--------------------------CGTCCGTGGCTGGTGGTGGCTGTGCAGGGCCCCTTTGGTCCCACCCCAGGACACTACCTCTTTTTAAGAGGCCACA---TCCTCCAGACAGTTTCCCCAAATTAGCCTCTCTTGACCTCAGACCAGCT--GCCACAACTTCTGGTTTGTTCCTTTTGCAGAGATTAGGGCCAATTATAACTTTGACTCGGTCCCCTAGAGGTCCGGGACTCGTAAAGACGGGAGACTGGAATGGGTTAAAAA-GGTGATTCGTCTCTGTGGGGCTTCCCCTGAGCACTGT------GTGTAGGCTGATGGCCTTGCTGGGGATGACCTGGCGCCAGCCACATTCGCACTGGTCCCTG----GCCTGAG-----------------GAGGCGGCACTGGCTGCCACCGGAGGATT--------------------------CCAG-----------GGGATGGCCAAGAAAGATCATGCTCTT-----CCTTTT---GGGCTGAGCT-GAAATCCCTCCAGTTAG----CCCTCTGGCCAGC----AGTGGCTGGCGACGCCAGAACCTGGTCTGACAGGGTAAAGGAATCGAATGAGAGCTACAAAACCGTCTGGGTGGGTATGGGccagcaggcccggcaggcccagcagaaccaccaggcccagcagacccagcaggcccagcagacccagcagaaccaccaggcccagcagaaccaccaggcccagcagACCTCGGTGCCAGTGAGGGGCAGACCAGAGAA-T-----GGATATGGG-----------GTGGGCACCTCATCTGCAAAAGCATTGATTCCT
i canFam3.chr30                 C 0 I 225
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e nomLeu3.chr6                   95280761  10 + 121039945 I

a score=24729.000000
s hg38.chr15_KI270850v1_alt        110289 23 +    430880 AAGAGCAAAAC--------------------------------------------ACAGCACACTAA
s panTro4.chr15_GL392289_random    185057 23 -    187897 AAGAGCAAAAC--------------------------------------------ACAGCACACTAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9394257 67 +  10928107 AAGAGCAAAACACAGCACACTCCTTATCTGCAAAGACATTGATTCCCAAGAGCAAACAGCACACTAA
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54047641 23 + 170124641 TAGAGCAAAAC--------------------------------------------ACAGCACACTAA
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65370452 23 + 171882078 CAGAGCGAAAC--------------------------------------------ACAGCACACTAA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50424533 23 -  58131712 TAGAGCAAAAC--------------------------------------------ACAGCACACTAA
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67712874 23 - 124595110 TTGAGCAAAAT--------------------------------------------GCAGGAGGCCAA
i mm10.chr9                     C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38482174 225 +  40214260 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e nomLeu3.chr6                   95280761 10 + 121039945 I

a score=357745.000000
s hg38.chr15_KI270850v1_alt        110312 230 +    430880 AGTGAGGGAGGCCATAGCACAAGGGGTGGGGGCACATGG-CCCTGCAGGATGGAGCCACCACAGTCACCGgctggaacggctcacagcagctgccaggagccaactgttgaattttcaggaattttgagaggcaggtgatactgcccacagtgggaatatttataccaggaaaagaggcaaatactgaaaatcagggttccctctccccaacaaagccctttgc-gaaacat
s panTro4.chr15_GL392289_random    185080 230 -    187897 AGTGAGGGAGGCCATAGCACAAGGGGTGGGGGCACATGG-CCCTGCAGGATGGAGCCACCACAGTCACCGgctggaacggctcacagcagctgccaggagccaactgttgaattttcaggaattttgagaggcaggtgataCTGCCGACAgtgggaatatttataccaggaaaagaggcaaatactgaaaatcagggttccctctccccaagaaagcccattgt-gaaacat
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9394324 213 +  10928107 AGTGAGGGAGGCCGTGGCACAAGGGGTGGGGGCACGTGG--CCTGCAGGACGGAGCCACCACTGTCACCCGCTGGAACAGCTCACGGCAGCGGCCAGGAGCCAACTG-----------------TTGAGAGGCAGGtgatactgcccgcagtgggaacatttataccaggaaaagaggcaaatactgaaaatcagggttccctctccccaagaaagcccactgctaaaacat
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54047664 230 + 170124641 AGTGAGGACGTACATAGCACAAGGGGTGGGGGCACACGG-CCCTGCAGGATGGAGCCACCACCGCCACCGgctggagcggctcacagcagctgtcaggagccaactgttgaatgttcaggaattttgagagccaggtgatactgcccatagtgagaatatttataccaggaaaagaggcaaatactgcaaatcagggttccccctccccaagaaagcccattgc-taaacat
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65370475 230 + 171882078 AGGGAGGGAGGCCATAGCACAAGGGGTGGGGGCACATGG-CCCTGCAGGATGGAGCCACCACCGTCACCGgctggaatagctcacagcagctgccaggagccaactgttgcattttcaggaattttgagagccaggtgagactgcccacagtgggaatatttacaccaggcaaagaggcaaatactgaaaatcagggttccctctccccaagaaagcccactgc-taaacat
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50424556 230 -  58131712 AGTGAGGGAGGCCATAGCACAAGGGGTGGGGGCACACGG-CCCTGCAGGATGGAGCTACCACTGCCACCGgctggagcggctcacagcagctgccaggagccaactgttgaatgttcaggaattttgagagccgggtgatactgcccatagtgagaatatttataccaggaaaagaggcaaacactgtaaataagggttccccctccccaagaaagcccattgc-taaacat
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67712897 186 - 124595110 ACCACGGGCAGCCACGGAACAGAGGGT-GGGGCACACGACCCCCACAGGATGGAGCCACCACCCTGGTGGGCTGGAGTGGCTTGGAGCAGCTGGCAAGAGCCGA-----------ACAGGGATTTTGTGGGCCAGGTGATACTGCCCACTCTGAGAATATTTATATCCCGCAAAGAGGTAAACATTTCAACCCGGGGC----------------------------------
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38482399 224 +  40214260 ACTGAGGGCAGCCCCAGGACAGAAGGGGAGGACGCGTGGCCTCCTCAGGATGGAGC-ATCACCAGGGCAGGCCGGA---gctcacagcggctggcaagagctgagtgttaactttgcaggagtttggcCCTCCGGGCGATGTGGCCGg--gtggcagtatttataccctg-gaagaggcaagtgctacaaatcggggttccctttctcccagaaagcctgttgc-tcaacct
i canFam3.chr30                 I 225 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e nomLeu3.chr6                   95280761  10 + 121039945 I

a score=92016.000000
s hg38.chr15_KI270850v1_alt        110542 39 +    430880 ttacctacccagcacCCACGGGGAAGGGGGCACATCTCC
s panTro4.chr15_GL392289_random    185310 39 -    187897 ttacctacccagcacCCACGGGGAAGGGGGCACATCTCC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9394537 39 +  10928107 ttacctacccagcacCCACGGGGAAGGGGGCACATCTCC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95280771 39 + 121039945 TTACCTACCCAGCACCCACGGGGAAGGGGGCACATCTGC
i nomLeu3.chr6                  I 10 C 0
s rheMac3.chr7                   54047894 39 + 170124641 ttacctacccagcacCCATGGGGAAAAGGGCACATCTCC
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65370705 39 + 171882078 ttacctacccagcacCCATGGGGAAGGGGACACATCTCC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50424786 39 -  58131712 ttacctacccagcacCCACGGGGAAGAGGGCACGTCTCC
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67713083 39 - 124595110 TGGGCTGCTCACCACCCACAAGGAAGAGGGCACAGTCCC
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38482623 36 +  40214260 ttaccTG-TTAGGGTGCACGGGGA--GGGGCTCCTCTCC
i canFam3.chr30                 C 0 I 63
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I

a score=4431.000000
s hg38.chr15_KI270850v1_alt        110581 2 +    430880 CT
s panTro4.chr15_GL392289_random    185349 2 -    187897 CT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9394576 2 +  10928107 CT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95280810 2 + 121039945 CT
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54047933 2 + 170124641 CT
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65370744 2 + 171882078 CT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50424825 2 -  58131712 CT
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67713122 2 - 124595110 TT
i mm10.chr9                     C 0 I 19
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38482659 63 +  40214260 I
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=71873.000000
s hg38.chr15_KI270850v1_alt        110583 46 +    430880 GTGCCTACCCACCtgtgttaatcagggttccctagagggacagaac
s panTro4.chr15_GL392289_random    185351 46 -    187897 GTGCCTACCCACCtgtgttaatcagggttccctagtgggacagaac
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9394578 46 +  10928107 GTGCCTAATCACCtgtgttagtcagggttccctagagggacagaac
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95280812 42 + 121039945 GCGCCTACCCACCTGCgtt----agggttccctagagggacagaac
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54047935 46 + 170124641 GCGCCTACCCACCtgtgttagtcagggttctctagagggacagaag
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65370746 44 + 171882078 GTGCCTACCCACCtgtgctagtcagggttccctagagggataga--
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50424827 46 -  58131712 GAGCCTACCCACCtgtgttaatcagggttccctagagggacagaag
i chlSab2.chr26                 C 0 C 0
e mm10.chr9                      67713124 19 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38482659 63 +  40214260 I
e papAnu2.chr7                  102469642  0 - 162156779 I

a score=26677.000000
s hg38.chr15_KI270850v1_alt        110629 105 +    430880 taataggagatatagacagatatagatatagatatagatatagatatagatatagatatagatatagatatagatatagata-----atagatatagatatagatataga
s panTro4.chr15_GL392289_random    185397  67 -    187897 taataggagatatagacagatatagatatagatatagatatagat----atatagatatagatatagatat---------------------------------------
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9394624  35 +  10928107 taataggagatatagacagatataaatatagatat---------------------------------------------------------------------------
i ponAbe2.chr15_random          C 0 C 0
s rheMac3.chr7                   54047981 110 + 170124641 ttataggagatagatatagatatagatgtagatatagatgcagatatagatgtagacatagatgtagatatagatgtagacatagatatagatacagatacagatacaga
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65370790  44 + 171882078 --ataagagat--atatagatataggtatagatatagat--------------------------------------------------------------agatagata
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50424873  68 -  58131712 ttataggagatagatatagatatagatatagatgtagatatagatatagatacagatac------------------------------------------agatataga
i chlSab2.chr26                 C 0 C 0
e mm10.chr9                      67713124  19 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38482659  63 +  40214260 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e nomLeu3.chr6                   95280854   0 + 121039945 C

a score=655059.000000
s hg38.chr15_KI270850v1_alt        110734 416 +    430880 taatagatatagatatag--atagatatataaaggggagtttatgaagtattaacttacacaatcacaaggtcccacaataggctgtctgcaagtttgaggagcaaggagagccaatccgagtctcaaaactgaagaacctggagtccgatgttagagggcaggaagtgtccagcatgggagaaagatgtaggctgggaagctaggccaatcttaccttttcatgtttttctgcctgctttatattcgctagcagctgattagaaagatggtacccaccagtattaaaggtgggtctgccttccccagcccactgactcaaatgtttatctccttttacaatgccctcacagacacttccagtaggtcaatactttgcagccttcaacccaatcaagttgacactcagtattaactgt
s panTro4.chr15_GL392289_random    185464 414 -    187897 --atagatatagatatag--atagatatataaaggggagtttatgaagtattaacttacacaatcacaaggtcccacaataggctgtctgcaagtttgaggagcaaggagagccaatccgagtctcagaactgaagaacttggagtccaatgttagagggcaggaagtgtccagcatggaagaaagatgtaggctgggaggctaggcccatcttaccttttcatgtttttctgcctgctttatattcgctagcagctgattagaaagatggtacccaccagtattaaaggtgggtctgccttccccagcccactgactcaaatgtttatctctttttacaatgccctcacagacacttccagtaggtcaatactttgcagccttcaacccaatcaagttgacactcagtattaactgt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9394659 404 +  10928107 --atagat------------atagatatataaaagggagtttatcaagtattaacttacacaatcacaaggtcccacaataggctgtctgcaagtttgaggagcaaggagagccaatccaagtctcaaaactgaagaacttggagtctgatgctagagggcaggaagcgtccagcatgggagaaagatgtaggctgggaggctaggccagtctcgccttttcatgtttttctgcctgctttatattcgctagcagctgattagaaagatggtacccaccagtattaaaggtgggtctgccttccccagcccactgactcaaatgttaatctccttttacaatgccctcacagacacttccagtagatcaatactttgcagccttcaacccaatcaagttgacactcggtattaatcat
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95280854 409 + 121039945 taatagg---agatagat--atagatatataaaggggaagttattaagtattaacttacgcaatcacaacgtcccacagtaggctgtccgcaagcctgaggagcaaggagagccagtctgagttccaaaaccgaagaacttcgagtctgatgttagagggcaggaggcgtccagcatgggagaaagatgtagggtgggaggctgggccagtctcgccttttcacatttttctgctggctttatattcgctggcagctgatt----agatggtgcccaccagtattaagggtgggtctgccttccccagcccaatgactcaaatgttaatctcctttgacaacaccctcacagacacacccagggcatcaatactttgcacccttcaacccaatcgagttgacactcagtattaaccat
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54048091 411 + 170124641 -tatagatacagatatagatatagatatataaaggggaatttattaagtactaacttgcacaatcacaaggtccctcaataggctgtctgcaagcttgaggagcaaggagacccagtctgagtcccaaaactgaagaacttcgagtccaatgttagaggggaggacatgtccagcctgggagaaagatgtaggctgggaggctgggccagtctcgcattttcacatttttctgcctgctttatattcgctggcagctgatc----agatggtgcccaccagtatgaagggtgggtctgccttccccagcccactgactcaaatgttaacctcctttggcaacaccctcgcagacacaccca--ggatcaatactttgcacccttcaacccaatcaagttgacagtcagtattaactat
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65370834 413 + 171882078 -gatagatagatagatagatagatagatagaaaggggagtttattaaatattaacttacacaattacacagtcccacaataggctgtctgcaagtttgaggagcaagaagagccagtcggagtctcaaaactcaagaacttggagtccgatgttagagggcaggaagcatccagcaggggagaaagatgtaggctgggaggctggtccagtcttgccttttcacatttttctgcctgctttatattcactggcagctcatt----agatggtgcccaccagtattaagggtgggtttgccttccccagcccactgactcaaatgttagtctccttttacaacaccctcacagacacacccaagggatcaatactttgcagccttcaacccaatcaagttgacactcagtattaaccat
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50424941 411 -  58131712 -tatagatatagatatagatatagatatataaaggggaatttattaagtactaacttgaacaatcacaaggtccctcaataggctgtctgcaagcttgaggagcaaggagacccagtctgagtcccaaaactgaagaacttcgagtccaatgttagaggggaggacatgtccagcatgggagaaagatgtaggctgggaggctgggccagtctcgcattttcacatttttctgcctgctttatatttgctgacagatgatc----agatggtgcccaccagtatgaagggtgggtctgccttccccagcccactgagtcaaatgttaatctcctttggcaacaccctcgcagacacaccca--ggatcaatactttgcacccttcaacccaatcaagttgacagtcagtattaactat
i chlSab2.chr26                 C 0 C 0
e mm10.chr9                      67713124  19 - 124595110 I
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38482659  63 +  40214260 I
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=70188.000000
s hg38.chr15_KI270850v1_alt        111150 39 +    430880 cacaCCACCCTTGCACTAAAGGTATACATACACCCACTA
s panTro4.chr15_GL392289_random    185878 39 -    187897 cacaCCACCCTTGCACTAAAGGTATACATACACCCACTA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9395063 39 +  10928107 cacaCCACCCTTGCACTAAAGGTATACATACACCCACTA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95281263 39 + 121039945 cacaCCACCCTTGCACTAAAGGTATATGTAGACCCGCCA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54048502 39 + 170124641 cacaCCACCCTTGCACTAAAGGCATATGTAGACCAGCCA
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65371247 39 + 171882078 cacaCCACCCTTGCACTAAAGGTATATGTACACCCACTA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50425352 39 -  58131712 cacaCCACCCTTGTGCTAAAGGCATATGTAGACCAGCCA
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67713143 28 - 124595110 CACACC-CCCTTGCCCAGAAGGTAT----------GCTA
i mm10.chr9                     I 19 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr30                  38482659 63 +  40214260 I
e papAnu2.chr7                  102469642  0 - 162156779 I

a score=1428218.000000
s hg38.chr15_KI270850v1_alt        111189 647 +    430880 GGGCATGGTCA----AGGTCAGAGATCTGGGCCAGACAGGAACTGAAGTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCGGCCTCCTCCCATCAGAAGAGAGTAG-AGCCTGTTTGGC-------------CAGAGTGGAATGGTGGCAGGAAGCAGAGGTACTTTCCGGAGCGCTGGGGTCTGAATGGGTCCATTGA--GGCTGGGCCCTGCTGCTTCCTGTAGGGCTGAGT-GGGAGAGGCTCACAGAGGCTGCCTTGTGCAGCTGG-AGCGCATA-GCCAGGGAGGCCCC-CACTCCAACAGAGGCCTCTGAGGCCTTGCTGGCCGGGGCTTTGGAAACTCTGACAGCGCTGCTTCCCTCACCTCCTGATCTCC-TTTTTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTCTGTCTTGGAGGTAGTGGGGGGG---GGGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCACAATAAAGATGTAATAAGCTAGGAGTCAAT-CCAGAGGACTTCCTGGAGGAGGTGATGGTGGTGTAGAG--TCACAGAGAGGGAGGAACAGGCAGTCTCAGAGGACAGCAGCAAGGCCAAGTGAGAGACTG--GCAGAGGTATACAGGTCCCCG-TTGGCTGGGGT--GAGGAGGG
s panTro4.chr15_GL392289_random    185917 645 -    187897 GGGCATGGTCA----ACGTCAGAGATCTGGGCCAGACAGGAACTGAAGTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCGGCCTCCTCCCATCAGAAGAGAGTAG-AGCCTGTTTGGC-------------CAGAGTGGAATGGTGGCAGGAAGCAGAGGTACTTTCCGGAGCGCTGGGGTCTGAATGGGTCCATTGA--GGCCGGGCCCTGCTGCTTCCTGTAGGGCTGAGT-GGGAGAGGCTCACAGAGGCTGCCTTGTGCTGCTGG-AGCGCATA-GCCAGGGAGGCCCC-CACCCCAACAGAGGCCTCTGATGCCCTGCTGGCCAGGGCTTTGGAAACTCTGACAGCACTGCTTCCCCTACCTCCTGATCTCC-TTTTTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTCTGTCTTGGAGGTAGT--GGGGG---GTGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCACAATAAAGATGTAATAAGCTAGGAGTCAAT-CCAGAGGACTTCCTGGAGGAGGTGATGGTGGTGTAGAG--TCACAGAGAGGGAGGAATAGGCAGTCTCAGAGGACAGCAGCAAGGCCAAGTGAGAGACTG--GCAGAGGTATACAGGTCCCCG-TTGGCTGGGGT--GAGGAGGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9395102 644 +  10928107 GGGCATGGTCA----ATGTCAGAGATCTGGGCCAGGCAGAAACTGAAGTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCGGCCTCCTCCCAGCAGAAGAGAGTAG-AGGCTGTTTGGC-------------CAGAGTGGAATGGTGGCAGGAAGCAGAGGTACTTTCCGGAGCGCTGGGGTCTGAATTGGTCCATTGA--GGCTGGGCCCTCCTGCTTCCTGTAGGGCTGAGT-GGGAGAAGCTCACAGAGG-TGTCTTGTGCTGCTGG-AGTGCATA-GCCAGGGAGGTCCC-CACCCCAACAGAGGCCTCTGAGGCCTTGCTGGCCAGGGCTTTGGAAACTCTGACAGTGCTGCTTCCCCCACCTCCTGATCTCC-TTTTTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTCTGTCTTGGAGGTAGT--GGGGG---GTGGGCAGTTGAAGAGGGGATTTGAATGGAGAGGGTCTGCACAATAAAGATGTAATAAGCTAGGAGTCAAT-CCAGAGGACTTCCTGGAGGAGGTGATGGTGGTGTAGAG--TCACAGAGAGGGAGGAATAGGCAGTCTCAGAGGACAGCAGCAAGGCCAAGTGAGAGGCTG--GCAGAGGTATACAGGTCCCCG-TTGGGTGGGGT--GACGAGGG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95281302 630 + 121039945 AGGCATGGTCA----ACATCAAGGCTCTGGGCCAGGCAGGAACTGAACTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCAGCCCCCTCCCAGCAGAAGAGAGTAG-AGCCTGTTTGGC-------------AGGAGTGGGAGGGTGGCAGGAAGTAGAGGTACTTTCCAGAGCGCTGGGGTCCGAATGGGTCCACTGAGGGGCTGGGCCCTGCTGCTTCCTGTGGGGCTGAGC-GGGAGGGGCTCGCACAGGCTGTCTTGTGCTGCTGG-AGCGCATG-GCCAGGCAGCCCCC-CATCCCAACAGAGGCCTCTGAGGCCTTGTTGGCCAGGGCTTTGGAAACTCTGACAGTGCTGCTTCCCCCACCTCCTGGTCTCC-TTTTTCTGCCCCTCTTACACTCTCTAAGGGGCTTCAGTTGCAAGAATCCAGAATCCCTGTCTTGGAGGTGGT--GTGGG-----GGGCAGTTGAAGAGGGGCTTCGAATGGAGAGGGTGTGCAGGATTAAGATGTAATAAACTAGGAGTCAAT-CCAGAGGACTTCCTGGAGGAGGTGGCAGTGGT-----G--TCACAGAGAGGGAGGAATAGGTGGTCTCAGAGGGCAGCAGCAAGGCCAAGTGAGAGACTC--G----------CAGGTCCCCC-TTGGGTGGGGC--GAGGAGGG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54048541 649 + 170124641 AGGCTTGGTCA----ATGTCAGGGCTCTGGGCCAGACAGGAACTGAATTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCAGCCCCCTCCCAGCAGAAGACAGTAG-AGCCTGTTTGGC-------------TAGAGTGGGAGGGTGGCAGGAAGCAGAGGTACTTTCCAGAGCGCTGGGGTCTGAATGGGTCCATTGAGGGGCTGGACCCTGCTACTTCCTGTGGGGCTGAGT-GGGAGGGGCTCACACAGGCTGTCTTGTGCTGCTGG-AGCGCATA-GCCAGGCAGCCCCC-CATCCCAACAGAGGCCTCTGAGGCCTTGCT--CCAGGGCTTTGGAAACTCTGACAGCACCACTTCACCCACCTCCCAGTCTCCATTTTTCTGCCCCTTTTACGCTCTCTGAGGGGCTGCAGTTGCAAAAACCCAGAATCCCTGTCTTGGAGGTGGT--GGGGGATGGGGGGCATTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCAGGATAAAGATTTAATAAGCTAGGAGTCAAT-CCAGAAGACTTCCTGGAGGAGGTGACAGTGGTGTACAG--TCACAGAGAGGGAGGAAGCAGCAGTCTCTGAGGACAGCAGCAAGGCCAAGTGAGAGACTG--GCAGGGGTACACAGGTCCCCC-TCAGGTGGGGC--AGGGAGGG
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                   65371286 647 + 171882078 GGGCATGGTCA----ACGTCAGGAATCTAGGCCAAACAGGAACTGAAGGAGGTGGTTGGCTCTAACCACTGAACCATCTGCCTGCAGCCCCCTCCCAGCAGAAGAGAGAAG-AGCCTGTTTGGC-------------CAGAGTGGAACGGTGGCAAGAAACAGAGGTACTTTCCAGAGCGCTGAGGTCTGAATGGGTCCACTGAGGGGCTGGGCCCTGCTGCTTCCTGTGGGGCTGAGC-GGGAGGGGCT--CAGAGGCTGCCTTGTGCTGCTGG-ATTGCATA-GCCAGTCAGGACCC-CACCCCAACAGAGGCCTCTGAGGCCTTGCTGGCCAGGGCTTTGGAAACTCTGACAGCGCCGCTTCCCCCACCTTCTGATCTCC-TTTGTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTGTGTCTTGGAGGTGGT--GAGGGGC-GGGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCAGGATAAAGATTTAATAAGCTAGGAGTCAAT-CCAGAAGACTTCCTGGAGGAGGTGATGGTGGTGTAGAG--TCACAGAGAGGGAGGAATAGGCAGTCTCAGAGGACAGCAGCAAGTCCAAGTGAGAGACTG--GCAGAGGTGTACAGGACCCCA-CTGGGTGGGGT--GAGGAGGG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50425391 650 -  58131712 AGGCTTGGTCA----ATGTCAGGGCTCTGGGCCAGGCCAGGAAGGAACTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCAGCCCCCTTCCAGCAGAAGACAGTAG-AGCCTGTTTGGC-------------TAGAGTGGGAGGGTGGCAGGAAGCAGAGGTACTTTCCAGAGTGCTGGGGTCTGAATGGGTCCATTGAGGGGCTGGACCCTCCTACTTCCTGTGGGGCTGAGT-GGAAGGGGCTCACACAGGCTGTCTTGTGCTGCTGG-AGCGCATA-GCCAGGCAGCCCCC-CATCCCAACAGAGGCCTCTGAGGCCTTGCTGGCCACGGCTTTGGAAACTCAGACAGCACCACTTCACCCACCTCCCAGTCTCCATTTTTCTGCCCCTTTTACACTCTCTGAGGGGCTGCAGTTGCAAAAACCCAGAATCCCTGTCTTGGAGGTGGT--GGGGGATGGGGGGCATTTGAAGAGGGGCTTTGAATGGAGATGATGTGCCGGATAAAGACGTAATAAGCTAGAAGTCAAT-CCAGAAGACTTCCTGGAGGAGGTGACGGTGGTGTACAG--TCACAGAGAGGGAGGAAGCAGCAGTCTCTGAGGACAGCAGCAAGGCCAAGTGAGAGACTG--GCAGGGGTACACAGGTCCCCC-TTGTG-GGGGC--AAGGAGGG
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67713171 575 - 124595110 AGTGTTAG----------GCAGGGCTCTGGGTCAGGC----ACTAAGGTGCACGGCTGGCCCTAACCACTGAACCACCTGCCTCTTGCTCCCTTCCCACAGGAGAGAGCAGCAGCCTGTTTGAC-------------TA-AGTGGGAGGGTGGCAGGAAGCAGAGGTACTTTCCAGAGAGCTGGGGTCTGAATGAGCCCTTTGAGGGACTGGGCCCTGCTGTTTCCTGTGTG--------GAGAGGCACTCACACTGGCTGCCTTGTGTTGTTGG-AGTGTGCAGGCCAGGCAGCCCCCTTGTCAGAACAGAGGCCTCTGAAGCCAAGCTGGCTGGGGCTTTGGAAACTCTGACAGTA------CCCCCACCTC---ACCTCCATACTTGTGCTCCACTCACCCT-TCTGACAGGATGCATT----------CAGAATTGCTGTCAT--------T--AGGTA---GGGGGCAGTTGGAGAGGACCTTCAAATATAAAGAGGGTGCAGGATGAAGAAATAACAAGCCAGAAGTCAATCCCGGAGGACATCCTGGAGGAGGTGAGGGCGGCATAAAGCATCACAGAGGAAGAGGAATAAATGATCTCAGGGAG-------AAGGATCGGTGGAAGGTCG--GC---------------------------TAGC--AATGGAGG
i mm10.chr9                     C 0 C 0
s canFam3.chr30                  38482722 642 +  40214260 GGACATCGTCATAGGGCCTCAGGGC-CCGTACCAGGCCGGAAGTGAAGGCGCTGGCTGGCTCTAACCCCTGAACCACCTGCCCCTAGCCCCCTCGCAGAAGAGGAGAGGGCCGGCCTGTTTAGCCTTGTCCTCCAGGCGGAGTGGGAGGGTGGCAGGAAGTAGAGGTACTTTCCAGAGAGCTGGGGTCTGAATGAGCCTATTGAGGGGCTGGGCCCTGCCGTTTCCTGTGGGCCTGGGCAGGGACGCGCTCACACAAGCCGCCTTGTGCGGCTGGAAGTGCACAGGCCAGGCGGCCCCCTCGTCCTAACAGAGGCCTCTGAGGCCTCGCTGGCCAGGGTTCTGGAAACTCTGACAGCGCCGTTCCCCCCACGTCCCGGTCTCC-TGCTGCTGCCCCTC--GCCGTCTCTGATGGGCCGCAGCTGCAAGGACCCAGAACCCCGGTCCT-----------GGGAG-------ACAGCTGGAGACGAGCTGTGAGTGGGGAGGCAGGGCAGGACGAAGCCGT---GAGCTAGGAGTCAGTTCCAGAGGGCTTCCTTGGGGAGGTGACGCTGGGAGAGAG-------------GAGCAGGCGGGGGTTTCAAAGG---GCAGCAAGGCCAAGTGACAGACTGAAGCAGAGATGTGCGGGCTCTGGAACAGCTGGAGCCAGAGGAGGG
i canFam3.chr30                 I 63 N 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=31769.000000
s hg38.chr15_KI270850v1_alt        111836 15 +    430880 TTTCTGCTCCCTCAC
s panTro4.chr15_GL392289_random    186562 15 -    187897 TTTCTGCTCCCTCAC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9395746 15 +  10928107 TTTCTGCTCTCTCAC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95281932 15 + 121039945 TTTCTGTTCCCTCAC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54049190 15 + 170124641 TTTCTCCTCCCTCAC
i rheMac3.chr7                  C 0 N 0
s macFas5.chr7                   65371933 15 + 171882078 TTTCTGCTCCCTCAC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50426041 15 -  58131712 TTTCTCCTCCCTCAC
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67713746 15 - 124595110 TTTCTGTTCCCATGC
i mm10.chr9                     C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I

a score=7247.000000
s hg38.chr15_KI270850v1_alt        111851 6 +    430880 CCCCCA
s panTro4.chr15_GL392289_random    186577 6 -    187897 CCCGCA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9395761 6 +  10928107 CCCCCA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95281947 6 + 121039945 CCCCTA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65371948 6 + 171882078 CCCCTA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50426056 6 -  58131712 TCCGTA
i chlSab2.chr26                 C 0 C 0
s mm10.chr9                      67713761 6 - 124595110 CCCTTA
i mm10.chr9                     C 0 N 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=11970.000000
s hg38.chr15_KI270850v1_alt        111857 9 +    430880 GAGCCTCTG
s panTro4.chr15_GL392289_random    186583 9 -    187897 GAGCCTCTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9395767 9 +  10928107 GAGCCTCTG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95281953 9 + 121039945 CAGCCTCTG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65371954 9 + 171882078 GAGCCTCTG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr26                  50426062 9 -  58131712 GAGCCTCTG
i chlSab2.chr26                 C 0 n 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=2910.000000
s hg38.chr15_KI270850v1_alt        111866 3 +    430880 GCT
s panTro4.chr15_GL392289_random    186592 3 -    187897 GCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9395776 3 +  10928107 GCT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   95281962 3 + 121039945 GCT
i nomLeu3.chr6                  C 0 N 0
s macFas5.chr7                   65371963 3 + 171882078 GCT
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50426071 0 -  58131712 I
e papAnu2.chr7                  102469642 0 - 162156779 I

a score=250946.000000
s hg38.chr15_KI270850v1_alt        111869 552 +    430880 TATCACAGGATAAGAGCCAGCTAAGCTCCAGGGGCTTTCCAGGAAAAGTGTCTCTTGGAAAGGGTGTGACCTTTTCATCGGTCCTGACAGCACCCTAGAAATAGCTTGGCCTTTTCCCTCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAAGACACATTCCCTGTCATCCAGAAATGGGTTTGATTCTCAGCTGAGGGACAGCAGGACTGGTAGAGAC-TGTCAGGCCACACAGCTACCTACAGAGCACCCCCATGCTTGGTCGGGGGTGGGAGGGATGGCAGGGTCTGGCTGTCCACAGGCCGGGCATGACAGTGGGGCGCACTGGAAGTGGCGCACTTTGGAGGGGCAATGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCACGGTGACTGATTCCCAATGCTAGAGGCGAGGCAATCGGTCATGTGTAGgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATATACACACACATAtgtgtgtatatatatatgagggtgtgtgtatgtgtgtgtATACATAA
s panTro4.chr15_GL392289_random    186595 538 -    187897 TATCACAGGATAAGAGCCAGCTAAGCTCCAGGGGCTTTCCAGGAAAAGTGTCTCTTGGAAAGGGTGTGACCTTTTCATCGGTCCTGACAGCACCCTAGAAATAGCTTGGCCTTTTCCCTCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAAGACACATTCCCTGTCATCCAGAAATGGGTTTGATTCTCAGCTGAGGGACAGCAGGACTGGTAGAGAC-TGTCAGGCCACACAGCTACCTACAGAGCACCCCCATGCTTGGTCGGGGGTGGGAGGGATGGCAGGGTCTGGCTGTCCACAGGCCGGGCATGACAGTGGGGTGCACTGGAAGTGGCGCACTTTGGAGGGGCAATGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCACGGTGACTGATTCCCAATGCTAGACGCGAGGCAATCGGTCAtgtgtaggtgta------------tgtgtgtgtgtgtgtgtgtgtatatacacacacata--tgtgtatatatatatgagggtgtgtgtatgtgtgtgtATACATAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9395779 551 +  10928107 TATCACAGGATAAGAGCCAGCTAAGCTCCAGGGGCTTTCCAGGAAAAGT-TCCCTTGGAAAGGGTGTGACCTTTTCACCGGTCCTGACAGCACCCTAGAAATGGCTTGGCCTTTTCCCTCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTCCCTGTCATCCAGAAATGGGTTTGATTCTCAGCTGAGGGACAGCAGGACTAGTAGAGACTTGTCAGGCCACACAGCTGCCTACAGAGCACCCCCATGCTTGGTGGGGGGTGGGAGGGATGGCAGGGTCTGGCTGTCCACAGGCCGGGCATGACAG-GAGGCTCACTGAAAGTGGCACACTTTGGAGGGGCAATGTCAGGGGAGAAATTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCACGGTGACTGATTCCCAGTGCTAGAGGTGAGGCATTCGGCCAtgtgtaggtgtatatgtgtgtgtgtgtgtgtgtttgtgtgtgtatacatacacacacatatatgtgtatatatatatgaggatgtgtgtatgtgtgtgtatatataa
i ponAbe2.chr15_random          C 0 C 0
s macFas5.chr7                   65371966 492 + 171882078 TATCACAGGATAAGAGCCAGCTAAGCTCCA-GGGCTTTCCAGGAAAAGTGTCACTTGGAAAGGGTGTGACCTTTTCACCGCTCCCAACAGCACCCTAGAAATGGTTTGGCCTTTCCCCTCCC--GAGTTCCACAGAGAACACAGCCAGCAGAGGACACATTATCTGTCATCCAGAAATGGATCTGATTCTCAATCAAGGGACAGCAGGACTGGTAGAGAC-TGTCAGGCCACACGGCTGCCTGCACAGCACCCCCATGCTTGGTGAGGGGTGAGGGGGATGGCGGGGGCTGGCTGTCCACAGGCCAGACATGACAGGGAGGCTCACCAGAGGTGGCGCACTTTGGAGGGACAAAGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCACAGTGACTGATTCCCAGCGCTAGAGGCGAGGCAATCGGCCACgtgtaggtgta------------tatctatgtgtgtgtgtgtgtatatata----------tgtgtAttta-----------------------------------
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50426071   0 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I

a score=16926.000000
s hg38.chr15_KI270850v1_alt        112421 22 +    430880 tttatttatttagatggagtct
s panTro4.chr15_GL392289_random    187133 22 -    187897 tttatttatttagatggagtct
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9396330 22 +  10928107 tttatttatttagatGGAGTCT
i ponAbe2.chr15_random          C 0 I 674
s nomLeu3.chr6                   25557151 22 - 121039945 ttttttttttgagacagagtct
i nomLeu3.chr6                  N 0 C 0
s macFas5.chr7                   65372458 22 + 171882078 tttatttatttagatggagtct
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50426071  0 -  58131712 I
e papAnu2.chr7                  102469642  0 - 162156779 I

a score=120027.000000
s hg38.chr15_KI270850v1_alt        112443 267 +    430880 tgctctgccacccaggctggacctcagtggtgcgatctcgactcactgaaacctctgcctcctgggttcaagcaattctcctgcctcagcctgccgagtagctgggactacagtcacctgccaccacaccgggctaatttttgtatttttagtagagatgaggtttcaccatattggccaggctggtctcaaactcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccacagcacccagc
s panTro4.chr15_GL392289_random    187155 267 -    187897 tgctctgccacccaggctggacctcagtggtgcgatctcgactcactgaaacctctgcctcctgggttcaagcaattctcctgtctcagcctgccgagtagctgggactacagtcacctgccaccacaccgggctaatttttgtatttttagtagagatgaggtttcaccatattggccaggctggtctcaaactcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccacagcacccagc
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   25557173 269 - 121039945 cgctctgttgcccaggctggagtacaatagcatgatctcggcttaccacaacctctgtctcccagattcaagcaattctcctgcctcagcctcccaagtagctgggattacaagcatgcgacaccatgcccagttaatttttgtatgtttagtagagacagggtttcaccatgttggccaggctgatctcaaactcttggcctcaagtgatccgcccgcctcagcttcctaaagtgctgagattacaggcatgagccaccgcacctggc
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65372480 267 + 171882078 tgctctgtcccccaggctggagtgcagtggcgcgatctcggcaaactgaaacctctgcctcctgggttcaagcgatgctcctgccccagcctgccaagtagctgggactacaggcacccgccaccactaccggttgctttttgtatttttagtagagatgaggtttcaccatattggcgaggctggtctcaaactcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctaggattacaggcgtgagccacagcacccggc
i macFas5.chr7                  C 0 n 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50426071   0 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e ponAbe2.chr15_random            9396352 674 +  10928107 I

a score=31756.000000
s hg38.chr15_KI270850v1_alt        112710 155 +    430880 TATT------------------TATAGAtatttatagaatatgacctcaactatttaaacatatctgtaagggtataagtactttgataacaaagaagcaatacatactgatagaaactagctatcatgtcaacagtacttatattaggtagagaaattatgtgagattttta
s panTro4.chr15_GL392289_random    187422 155 -    187897 TATT------------------TATAGATATTtatagaatatgacctcaactatttaaacatatctgtaagggtataagtactttgataacaaagaagcaatacatactgatagaaactagctatcatgtcaacagtggttatattaggtagagaaattatgtgagattttta
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   25557442 173 - 121039945 cagtaaatgttttttaaaatgatgtaaaactatatagaatatgacctcaactatttaaacatatgtataaaggcatatgtattttactagcaaagaaaaaatatataatggtagaaaataaccatcatgtcaacagtggttatattaggtagagaaattatgggagattttat
i nomLeu3.chr6                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50426071   0 -  58131712 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e ponAbe2.chr15_random            9396352 674 +  10928107 I

a score=28485.000000
s hg38.chr15_KI270850v1_alt        112865 58 +    430880 --tttttt------tatattttactaatcttctcaataatggttgcttataagttttataatcaag
s panTro4.chr15_GL392289_random    187577 58 -    187897 --tttttt------tatattttactaatcttctcaataatggttgcttgtaagttttataatcaag
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random            9397026 58 +  10928107 --TTTTTT------TATATTTTACTAATCTTCTCAATAATGGTTGCTTATAAGTTTTATAATCAAG
i ponAbe2.chr15_random          I 674 C 0
s nomLeu3.chr6                   25557615 66 - 121039945 ttttttttcctgtctatattttactaattttctcaacaatggttgctcatgagttttataatcaag
i nomLeu3.chr6                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr26                  50426071  0 -  58131712 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65372747  0 + 171882078 I

a score=197476.000000
s hg38.chr15_KI270850v1_alt        112923 262 +    430880 aaaaaagaTTTCTAAAGTTTTTGCAAAATGGAAAGTTATGCTTCTTTATATACTAAAGACAAAAACAAAACTTCCTATTTGAATACCTTTGACTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTCCCACTAGTTCTGGTGTCATTCTCCCCATCTCTCCCTTCACTTCCACCTTGGTCTTCTTTCTACTTCCCACCTTGGCTAGTGGTCTCCACCCAAAATGCTTGCTTGGCTTAATGGTTAGAATTC
s panTro4.chr15_GL392289_random    187635 262 -    187897 aaaaaGGATTTCTAAAGTTTTTGCAAAATGGAAAGTTATGCTTCTTTATATACTAAAGACAAAAACAAAACTTCCTATTTGAATACCTTTGACTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTCCCACTAGTTCTGGTGTCATTCTCCCCATCTCTCCCTTCACTTCCACCTTGGTCTTCTTTCTACTTCCCACCTTGGCTAGTGGTCTCCACCCAAAATGCTTGCTTGGCTTAATGGTTAGAATTC
i panTro4.chr15_GL392289_random C 0 T 65427
s ponAbe2.chr15_random            9397084 235 +  10928107 AAAAAAGGTTTCTAAAGTTTTTGCAAAATGGAAAGTTATACTTC---ATATACTAAATACAAAAACAAAACTTCCTATTTGAATACCTTTGACTTTTACTGCAGACTTAGAGACCCTTGAAAGGAAAGGCAATCCCCTCCCACTAGTTCTGGTGTCATTCTCCCCATCTCTCCCTTCACTT------------------------CCACCTTGGCTAGTGGTCTCCACCCAAAACGCTTGCTTGGCTTAATCGTTAGAATTC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25557681 249 - 121039945 aaaaaaaGTGTTAAAAATTTTTTCAACATGGAAAGTTATATTTCTTTATATACTAAAAACAAAAATAAAACTTTCTATT-------------CTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTCATACTAGTTCTGGTGTCATTCTCCCCATCTCTCCCTTCACTTCTACCTTGGTCTTTTTTCTGCTTCCCACCTTGGCTAGTGGTCTCTACCCAAAATTCTTGTTTGGCTTAATGGTTAGAATTC
i nomLeu3.chr6                  C 0 C 0
s chlSab2.chr29                  20382562 261 -  24206276 AAAAAAGGTTTTTAAAATTTTTCCAACATGGAAAGTTATATTTCTTTATATACTAAAAACAAAAACAAAACTTTCTATTTGAATATCTTTGACTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTTCCACTAGTTCTGGTGTCATTCTCCCCATCTCT-CCTTCACTTCCACCTTGGTCTTTTTTCTACTTCCCACCTTGGCTAGTGGTCTCTACTCAAAATGCTTGCTTGGCTTAATGTTTCGAATTC
i chlSab2.chr29                 I 47568 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I

a score=564075.000000
s hg38.chr15_KI270850v1_alt        113185 1175 +    430880 AGGGAAAAAGAGATCCCGAATTGCTAATCTAAACTAAGATTATACATGTGGGAAATAATAAAGAGAAACCAGGTAGTAAATAAGATTTGGAGGAC---TTAAAATACCCAGACTTTAATTCCTCTAAGATTATAGTTattaatcatgtttttat--ataatattatcatttaacatttaatttctaaatataaTGTTCATGAGGAAAAGAGAAAATAGCTTGGTTTCTTTCCTTACCGAACTGTTGTCCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTTGGCTCATCAGAGTCCACAGACCATATCGGTGAAGAAGATGAATAGGATTCCTGTTTAACCCAGAGACACCTATGTTAAATG------TTTACATACAGACTAACCCAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCATGGATTTAAACAAAATGTATCAGGGGGAAAAGGCAACACGTTTAAACCCATGTGAGGAGCTGGACTTCTGAGACAGCCATTCTCCTTGCATAGCACTGTCTGCTGCTACAGCTCATAGAAGTCAACAATTTTCTTCAACACtggtaggcagcctct-aaatggccctgatcaccctcacctcctgccattcacacccttgtaaaatt-ccacccctggacctagtgactcacttctaacaaagagaatacagcaaaag---taacatcgcttctgaggtgaggctacaaggagactacgatgcctgccttagtcacccttctcctgctctttccattgctccctctgatggaagccagttgccatgtgatgaggtgccctatggagaggcccacgtgacaaggtattgtaaaaagcctctgaccaatagccatctagaaacggaggcccagtccagcagcctctgagatgaatcctgccaacc----------tgagcttggagacagattctctccctatcctgccttgggatgatcacagccaccatcaacaccttcactgcctggtgagaggccaagccagtgaacccaaggtaaactggacagaatcctgacccacagaaactg--agataatgtttgttattttaagctgctcaatttgttacagagcaatagataactaaCTCAAACACCATAAAATTCTAATATTTTATTCTATCACACAAACCAAGTAATACCAAGTAAATGCCATTACTATACATATA
s ponAbe2.chr15_random            9397319 1176 +  10928107 AGGGAAAAAGAGACCCTGAATTCCTAATCTAAACTAAGGTTATACATGTGGGAAATAATAAAGAGAATACATGTAGTAAGTAAGATCTGGAGGAC---TTAAAATACCCAGACTTTAATTCCTCTAAGATTATAGTTATTAATCATGCTTTTAT--ATAATATTATCACTTAACATTTAAGTTCTAAATATAATGTTCATGAGGAAAAGAGAAAATAGCTTGGCTTCTTTCCTCACCGAAATGTTGTCCTTAGTATCTTCTAGACGTTCCAGAAGTGATGTCAGATTTGGCTCATCAGAGTCCACAAACCATATCGGTGAAGAAGATGAACAGGATTCCTGTTTAACCCAGAGACACCTATGTTAAATG------TTTACATACAGACTAACCCAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCATGGATTTAAATAAAATGTATT-GGGGGAAAAGGCAACACGTTTAAACCCATGTGAGGAGCTGGACTTCTGAGACAGCCATTCTCCTTGCATAGCACTGTCTGCTGCTACAGCTCATAGAAGTCAACAATTTTCTTCAACACtggtaggcagcctct-aaatggccctgatcaccctcacctcctgccattcacacccttgtaaaatt-ccactcctggacctagtgactcacttctaacaaagagaatacagcaaaag---taacaccacttctgaggtgaggctacaaggagactatgatgcctgccttggtcacccttctcctgctctttgcattgctccctctgatggaagccagttgccatgtgatgaggtgccctatgaagaggcccacatggcaaggtattgtaaaaggcctctgaccagtaaccatctagagacagaggcccagtccaacagcctctgacgtgaatcctgccaaca----------tgagcttggagacggattctctccctatcctgccttgggatgatcacagccgccaccaacaccttcactgcctggtcagaggccaagccagtgaacccaaggtaaactggacagaatcctgacccacagaaactgtgaggtaaagtttgttgttttaagctgctaaatttgttacagagcaatagataactaattcaAACACCATAAAATTCTAATATTTTATTCTATCACACAAACCAAGTAACACCAAGTAAATGCCGTTACTATACATATA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25557930 1198 - 121039945 AGGGAAAAAGAGATCCCTAATTTGTAATCTAAATTAAGGTTACACATGTGGGAAATAAAAGAGAGAGACCAGGTAGTAAATAGAATTTGAAGGACAAAAAAAAAAAACTAGTCTTTAATTCCTACAAGATTATAATCATTAATCATGCTTTTAT--ATCATATTATCTCTTAACATTTAATTTCTATATGTAATGTTCACGAGGAAAAGAGAAAATAGCTTGGCTTATTTTCTTACCAAATTGTTGTTCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTTGGGTCTTCAGAATCCACAAACCATATTGGTGAAGAAGATGGATAGGATTCCTGTTTAACACAGAGACACCTATGTTAATTGTTTACATTTACATACAGACTAACCCAAATATGCAATTAAACCACACCACTAAACGGCAAGATGATCATGGATTTAAACAAAATGTATG-GGGGGAAAAGGCAACACATTAAAAACCATGTGAGCAGCTGGACTTTTGAGACAACCATTCTCCTTGCACAGCACTGTCTGTTGCTACAGCTCATAGAAGTCAACGATTTTCTTCAACACtggtaggcagcctctaaaatggccccgatcaccctcacctcctggcattcacacccctgtaaaattcccgcccctggacctagtgactcacttctaacaaagagaatacagcaaaagtaataacatcacttctgagattaggctacatagagactacgatgtctgccttgctcatccttctcctgctctttccattgctccctctgatggaaaccagttgccgtgtgatgaggtgccctatggagaggcccacatggcgaggtattataaaagtcctcagatcaacagccatctagaaatggtggcccagtcccacagcctgtgagatgaatcctgccaacatctacataagtgagcttggagactgattctctccctatcctgccttaggatgatcacagctgctaccaacaccttcactgcctggtgggaggccaagccagtgaacccaaggtaaattgcacaaaatcctgacccacagaaatggtgagataatg-ttgttgctttaagctgctaaatttgttacagagcaatagaaaactaattcaAATACCATAAAATTCTAATGTTTTAATCTATCACGCAAACCAAGTACTACCAAG-AAATGCCATtactacatatata
i nomLeu3.chr6                  C 0 I 340
s chlSab2.chr29                  20382823 1177 -  24206276 AGGGAAAAAGAGATCCTGAATTCCTAATCTAAACTGAGGTTATATATGTGGGAAATAATAAAGAGAATCCAGATAGTAAGTAAGATTTGGAGGGC---TTAAAATACCCAGACTTTAATTCCTGTAAGATTATAGTCTTTAATCATGTTTTTTTTAATCGTATTATCTCTTAACATTTAATTTCTAAATATAATATCCATGAGGAAAAGAGAAAATAGCTTGGCTTCTTTCCTCACAGAATTGTTGTTCTTAGTATCTTCTAGACATTCCAGAACTGATGTCAGATTTGGCTCATCAGAGTCCACAAACCATATTGGTGAAGAAAATGAACAGGATTCCTGTTTAACACAGAGACACCTATGTTAAACA------TTTACATACAGACTAACCCAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCATGGATTTAAACAAAATGTGT--GGGAGAAAAGGCAACACATTAAAACCCATGTGAGGAGCTGGACTTCTGAGACAGCCATTCTCCTTGCATAGCACTGTCTGCTGCTACAGCTCATAGAAGTCAACAATTTTCTTCAACACtggcaggcagcctct-aaatggccctgatcaccctcacctcctgccattcacatccttgtaaaattcccactcctggacctagtgactcacttctaacaaagagaatacagcaaaag---taacgtcacttctgagattaggttacaaggagactatgatgcctgccttggtcacccttctcctgctcttttcattgctccctctgatggaaaccagttgccatgtgatgaggtgccctatggagaggcccacatggcaaggtattgtaaaaggcctctgaccagtagccatctagaaatggaggcccagtccaacagcctctgagatgaatcctgccaatg----------caagcttggaggtggattctctccctatcctgccttgggatgatcacagccgccaccaacacattcactgcctggtgagaggccaagccagtgaacccaaggtaaactgcacagaatcctgacccacagaaactgtgagataaggtttgttgttttaagccactaaatttgttacagagcaatagataactaattcaAACACCATAAAATTTGAACATTTTATTCTATCACACGAACCAAGTAATACCAAT-AAGTGCCATTACTATACATATA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642    0 - 162156779 I
e macFas5.chr7                   65372747    0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=81292.000000
s hg38.chr15_KI270850v1_alt        114360 182 +    430880 TTTTTGTAACACAATTACATGTGA-TTTTTTAAAAAAGCTA-----------ATGAACTATGCATTATGTGCTTTCACCCACTAACAGACGTTCCCGCTGTTACTTTGTACTGTTCTCTATTATAAATTGGGGAAAAACCATTATTATTATATATTAGTTTCAGAATAACTAGGTTCAAGTCACAGAAAACAAT
s ponAbe2.chr15_random            9398495 182 +  10928107 TTCTTGGAACACAATTACATGTGA-TTTTTTAAAAAAGCTA-----------ATGAACTATGCATTATGTGCTTTCACCCACTAACAGATATTCCCCCTGTTACTTCGTACTGTTCTCTATTATAAATTGGGGAAAAAACATTATTATTATATATTAGCTTCAGAATAACTAGGTTCAAGTCATGGAAAACAAT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25559468 183 - 121039945 TTTTAAAAACACAATTACATGTGATTTTTTTAAAAAAGCTA-----------ATGAACTAAGCATTATGTGCTTTCACCCACTGACAGACATTTACTCTGTTACTTTGTATGGTTTTCTATTATAAATTGGGGAAAAGCCATTATTACTATATATTAGCTTCAGAACAACTAGGTTCAAGTCAAGGAAAACAAT
i nomLeu3.chr6                  I 340 C 0
s chlSab2.chr29                  20384000 193 -  24206276 TTTTCAGAACACAATTACATGTGA-TTTTTTAAAAAAGCTAATGAACTAAACATGAACTAAGTATTATGTGCTTTCACCCACTAATAGACATTCATTCTGTTATGTTGTCCTGTTTTCTATTACAAATTGGGGAAAAGCCATTATTATTATATATTAGCTTCAGAAGAACTAGTTTCAGGTCATGgaaaaccat
i chlSab2.chr29                 C 0 I 33
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=19317.000000
s hg38.chr15_KI270850v1_alt        114542  97 +    430880 TTTGCACAAACAACTTTAGGCAACACTGCTTTGAAAACTGTAATCTGAGTTAAAGCTGAAGCCACAGAAACCAAATA------------TTTACTGAAGGTTCCTTTTT
s ponAbe2.chr15_random            9398677  97 +  10928107 TTTGCACAAACAACTTTAGGCAACACTGCTTTGAAAACTGTAATCTGAATTAAAGCTGAAGCCACAGAAACCAAATA------------TTTACTGAAGGTTCCTTTTT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25559651 107 - 121039945 TTCACAGAAACGATTTTAGGAAACACTGCTTTGAGAACTATAATCTGATTTATAGCTGAAGCCACAGAAACTCAATATTTTTAAAGCATTTTATCAAATGTTC--TTTT
i nomLeu3.chr6                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                  20384193  33 -  24206276 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=1077.000000
s hg38.chr15_KI270850v1_alt        114639 3 +    430880 AAG
s ponAbe2.chr15_random            9398774 3 +  10928107 AAG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25559758 3 - 121039945 AAG
i nomLeu3.chr6                  C 0 C 0
s chlSab2.chr29                  20384226 3 -  24206276 cag
i chlSab2.chr29                 I 33 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65372747 0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=34504.000000
s hg38.chr15_KI270850v1_alt        114642 168 +    430880 AAAAGCAAGATGggccgggcacggtggctcgcgcctctaatctcagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcgagaccgtcctggctaacacggagaaaccccatctctactaaaaaaatacaaaaaaattagctgggcgcgctggcggg
s ponAbe2.chr15_random            9398777 168 +  10928107 AAAAACAAGATGggccaggcaaggtggctcacacctgtaatcccagcactttgggaggctgaggtaggcagatcacgaggtcaggagatcgagactgtcctggctaacacggagaaaccccgtctctactaaaaaaatacaaaaaaattagctgggcgcggtgacggg
i ponAbe2.chr15_random          C 0 I 338
s chlSab2.chr29                  20384229 163 -  24206276 aaaaACAAG-TTggctggtcacggtggctcatgcctgtaatcctggcactttgggaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaaccccgtctccactaaaata----aaaacaattagccagacatggtggcatg
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25559761   0 - 121039945 C
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=30944.000000
s hg38.chr15_KI270850v1_alt        114810 128 +    430880 tgcctgtagtcccagctactcaggaggctgaggcaggggaatcacttgaacccaggaggcagaggtttcagtgggccgagatgt-ccactgcactccaggctggcgatagagcaagactccatctcaaa
s ponAbe2.chr15_random            9399283 129 +  10928107 cgcctgtagtcccagctactcaggaggctgaggcaggggaatcacttgaacccgggaggcagaggtttcagtgagctgagatgcgccactgcactccagcctggcgatagagcaagactccgtctcaca
i ponAbe2.chr15_random          I 338 C 0
s chlSab2.chr29                  20384392 129 -  24206276 tgcctgtagtcccagttactcaggaggctgaggcaggtgaatcacttccacctgggaggcagaggtttcagtgagctgagatgtgccactgcactccagcctagtgacagagcaagacttcatctcaaa
i chlSab2.chr29                 C 0 I 81
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25559761   0 - 121039945 C
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=187.000000
s hg38.chr15_KI270850v1_alt        114938 13 +    430880 aaacaaacaaaca
s ponAbe2.chr15_random            9399412  8 +  10928107 aaacaaa-----a
i ponAbe2.chr15_random          C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                  20384521 81 -  24206276 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65372747  0 + 171882078 I
e nomLeu3.chr6                   25559761  0 - 121039945 C
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=2211.000000
s hg38.chr15_KI270850v1_alt        114951 8 +    430880 aaaagaaa
s ponAbe2.chr15_random            9399420 8 +  10928107 aaaagaaa
i ponAbe2.chr15_random          C 0 C 0
s chlSab2.chr29                  20384602 8 -  24206276 aaaagaaa
i chlSab2.chr29                 I 81 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e macFas5.chr7                   65372747 0 + 171882078 I
e nomLeu3.chr6                   25559761 0 - 121039945 C
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=51172.000000
s hg38.chr15_KI270850v1_alt        114959 149 +    430880 aacaaGTTGTATTGATGGAGGACATCATTAACAGTATATCTCTTCAATAATGGTTTATTTTACTATTCTCATTCTTCTCATTCCTC-TCTTACTGTGTTCCAAATCTCTTTACAGGCTAAA--AGAAACTCTTCAGAATTACTCCTAttctt
s ponAbe2.chr15_random            9399428 149 +  10928107 aacaaGTTGTATTGAAGGAGGACATCATTAACAGTATATCTCTTCAATAATGGTTTATTTTACTATTCTCATTCTTCTCATTCCTCTTCTTACTGTGTTCCAAATCTCTTTACAGGCTAAA--AGAAA-TCTTCAGAATTACTCCTAttctt
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25559761 141 - 121039945 AATAAGTTGTATTGATGAAGGACATCATTAATAGTATACCTGGTCAATAATGGGTTA-TTTACTATTCTCATTCCTC----------TCTTACTGTGCCCCAAATCTCTTTACAGGCTAAATGAGAAACTCTCCAGAATTAATCCTGTTCTT
i nomLeu3.chr6                  C 0 I 2
s chlSab2.chr29                  20384610 129 -  24206276 AACAAGTTGTATTGAAAGAGGACATCATTAACAGCATATCTCTTCA---------------ACTATTTTCATTCTTCTCATTCCTC-TCTTACAGTGTCCCAAATATCTTTGCACGCTAAA--ATAAACTCTT-AGAATTAATCCCtt----
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=1337.000000
s hg38.chr15_KI270850v1_alt        115108 12 +    430880 ttttttc-----------ttttt
s ponAbe2.chr15_random            9399577 23 +  10928107 tttttcctttttttggttttttt
i ponAbe2.chr15_random          C 0 C 0
s chlSab2.chr29                  20384739 12 -  24206276 ttttttt-----------ttttt
i chlSab2.chr29                 C 0 I 149
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65372747  0 + 171882078 I
e nomLeu3.chr6                   25559902  2 - 121039945 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=13416.000000
s hg38.chr15_KI270850v1_alt        115120 152 +    430880 tgagaccgagtttcgctcttgttgcccaggctggagcgcagtggcacgatctcagctcatcacaacctccacctcccaggttcaagcaattctcctgcctcagccttcctgagtagctgggattacaggcatgtgccatcatgccccactaa
s ponAbe2.chr15_random            9399600 152 +  10928107 tgagaccgagttttgctcttgttgcccaggctggagtgcagtggcacgatctcagctcatcacaacctccacctcccgggttcaagcaattctcctgcctcagccttcctgagtagctgcgattacaggcatgtgccatcatggccggctaa
i ponAbe2.chr15_random          C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                  20384751 149 -  24206276 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25559902   2 - 121039945 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=32949.000000
s hg38.chr15_KI270850v1_alt        115272 150 +    430880 ttttgtatttttagtagagacggggtttctctatgttggtcaggctggtctcgaacccctaatctcagatgatccacccacctcggcctcccaaagtgttgggattacaggcatgagccactgcgcccag-ccAACCCTATTCTTAAAGAA
s ponAbe2.chr15_random            9399752 150 +  10928107 ttttgtatttttagtagacacggggtttctccatgttggtcaggctggtcttgaacccctaatctcagatgatccgcccacctcggcctcccaaagtgttgggattacaggtgtgagccaccgtgcccag-ccAATCCTATTCTTAAAGAA
i ponAbe2.chr15_random          C 0 C 0
s chlSab2.chr29                  20384900 149 -  24206276 ttttgtatttttagtagagatggggtttcaccgtgttagccaaggtggtcttgatctcctgatctc--gtgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgaaccaccacgcctggccCAATCCTATTCTTAAAGAA
i chlSab2.chr29                 I 149 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25559902   2 - 121039945 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=223040.000000
s hg38.chr15_KI270850v1_alt        115422 519 +    430880 CACCAGTTCCTCAGTATTGCATTTTCTTCTATAAATTCTTCAGCATACACTGAGAATACACCATATGGACTATTTTTACACTTTTAATTTTCGTTTTTTTT---------TACTTTTGGCTAAGGAAATTTCAATTAGATTTAGGACTTCATTCTGTTAGGTTAGTATTT-TCTAGTAAACTTCAGCATAAGCAAAATAAAATACGTGTTGTTGCTCTGGACTGAAACCCCTCAAAACCATATTTTAAAAATTACAAAAAAAAATTAACTGAAATCAAGTTTTTAAAAACCTTGTAGATGAAAAGATATGATATCTAGTACGTCTAAGTACCTATTTcaatggttcccaaagtgcggccctcagacccccaagtccaaactattttgacaggaatactaacatggtgacatttgctgtaagtgtgcaaatacaatggtgggtaaaaatgctggtactttagcacaaacaaaagcagtaacaccaaactactagtagtcatggtattcttcattatgcacaggaaaggtt--------
s ponAbe2.chr15_random            9399902 517 +  10928107 CACCACTTACTGAGTATTGCATTTTCTTCTATAAATTCTTCAGCATACAGACAGAATACACCATATGGACCATTTTTACGCTTTTAATTTTGAGTTTTTTT-----------CTTTTGGCTAAGGAAATTGCAATTAGATTTAGGACCTCATTCTGTTAGGTTAGTATTTGTCTAGTAAACTTCAGCATAAGCAAAATAAAATACGTGTTGTTGCTTTGGACTGAAACCCCTCAAAACCatattttaaaaattac-aaaaaaaattaaCTGAAATCAAGTTTTTAAAAACCTTGTAGATGAAAAGATATGATATATAGTAGGTCTAAGTACCTATTTcaatggttcccaaagtgtggccctcagaccCCCaagtccaaactattttgacaggaatactaacatggtgacatttgctgtaagtgtgcaaatacaatggtggataaaaatgctggtactttagcacaaacaaaggcagtaacaccaaactactagtagtcatggtattcttcacTATGCACAGGAAAGGTA--------
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25559904 512 - 121039945 CACCACTTATTGAGTACTGCATTTTCTTCTTCAAATTCTTCAGCACACATTGGGAATACACCATCTGGACCATTTTTACTGTTTTAGTTTTTAGGTTTATT---------TTCCTTAGGCTAACGAAATTGCAACTACACTTAGGATCTCAT--TATTAGGTTAGTATTTGTCTAGTAAACTTCAGCATAAGCCAAGAAACATACACGTCATCACTCTGGACTGAAAGCCCTCAAAACCATATTAAGAAAATTAC-AAAAACAATTAACTGAAATCATGTTTTT---AATCTTGTAGATGAAAAGATATGATACACTGTAGATCTAAGTACCTATTTcaatggttcccaaagtggggccctcagacccccaggtccaaactatttttacaagaaaactaacatgttgaca--tgctgtaagggtgcagatataatggtgggtaaaaatgctggtactttagcacaaataaaggtggtaacaccaaactactagtagtcatggtattcttcactatgcacaggaaaggct--------
i nomLeu3.chr6                  I 2 C 0
s chlSab2.chr29                  20385049 534 -  24206276 CACCACTTTTGGACTGTTGCATTTTCTTCTTCAAATTCTTCAGCATACATTGGGAATACACCACATGAACCATTTCTACATTtttagttttgggttttttttgttttttgtttttttggCTAAAGAAACTGCAACTAGATTTAGGACCTCAATCTATTAGGCTAGTATTTGTCTAGTAAACTTGAGCATAAGCAAAATAAAATACATGTTGTTGCTCTGGACTGAAACCCGTCAAAACCATATTTTAGAAACTAC-AAAAAC-ATTAACTGAAATCAAGTTTTTAAAAATCTTGTAGATGAAAAGATATGACATATCGTAGGTTTAAGCACCTATTTCAatggttcccaaagtgtggccctcagaccccCAGgtccaaactattttgacaggaatactaacatggtgacatttgctgtaagggtacagatacaatggtgggttaaaatgctggtactttagcacaaataaaggcagtaacaccaaactactagtagtcatggtatgact-actatgcacaggaaaggttgaaaggtt
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=30714.000000
s hg38.chr15_KI270850v1_alt        115941 135 +    430880 taaaaaggaagggtgggtgggacatggtggcctacaccagtaatcccagtgcttcgggaggctgaggtagacggatcacttaaggtcaggagtttgagacgagcttggccaacatggtgaaaccccatctctact
s ponAbe2.chr15_random            9400419 135 +  10928107 TAAAAAGGAAGGGTGGGTGgggcatggcagctcacacctgtaatcccagtgctttgggaggctgaggcggatggatcacctgaggtcaggagtttgagaccagcttggccaacatggtgaaaccccatctctact
i ponAbe2.chr15_random          C 0 C 0
s chlSab2.chr29                  20385583 135 -  24206276 taaaaaggaacggtgggccgggcacagtgactcacacctgtaatcccagcactttgggaggccaagacgggcagatcacctgaggtcaagagtttgagaccagcctgaccaacatggtgaaaccccatctctact
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25560416   0 - 121039945 C
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=14166.000000
s hg38.chr15_KI270850v1_alt        116076 175 +    430880 aaaaatacaaaaattagctcggtgtggtggtgcatgcctgtattaccaaatacttaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgccttgagctgaaattgcacctatgtaactccagactgggcaacagagcaaaactccatctccaaaaataaaaa
s ponAbe2.chr15_random            9400554 168 +  10928107 aaaaatacaaaaattagctcggtgtggtggtgcatgcctgtagtcccagatacttaggaggctgaggcaggagaatcacttgaacctgggaggcagaagtt-------gctgaaattgtgcctatgtaactccagactgggcaacagagcaaaactccgtctctaaaaataaaaa
i ponAbe2.chr15_random          C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                  20385718   0 -  24206276 C
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25560416   0 - 121039945 C
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=41390.000000
s hg38.chr15_KI270850v1_alt        116251 172 +    430880 taaaaaggaagggcaacaaaaggtcagtttcatttaagaatgtctatgataagtttgggaattttggctcatgtctgtaattccagcactttggaaggcccaggcagggggatcccttgagcccgggagttcaagacctgcctgggcaacctggtgaaacctcatctttac---a
s ponAbe2.chr15_random            9400722 172 +  10928107 taaaaaGGAAGGGCAACAAAAGGTCAGTTTCATTTAAGAATGTCTATGATAAGGTTGGGAATTTtggctcatgtctgtaattccagcactttggaaggcccaggcagggggatcacttgagcccaggagttcaagacctgcctgggcaacctggtgaaacctcatctctat---a
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25560416 175 - 121039945 taaaaaggaagggcaacaaaatgtcagtttcatttaagaatgtctacgataaggctgggaatggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggaggatcacttgagcccaggagttcaagaccagcctggccaacagggtgaaaccccatctctacaaaa
i nomLeu3.chr6                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                  20385718   0 -  24206276 C
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=42610.000000
s hg38.chr15_KI270850v1_alt        116423 91 +    430880 aaaaatacaaaaattagctgaacacagtggctgcatgcctgtagtcccagcgtcttggaaggctgaggcaggaggattgactgaacccaga
s ponAbe2.chr15_random            9400894 91 +  10928107 aaaaatacaaaaattagctgaacacagtggctgcatgcctgtagtcccagcttcttggaaggctgaggcaggaggattgactgaacccagA
i ponAbe2.chr15_random          C 0 M 746
s nomLeu3.chr6                   25560591 91 - 121039945 aaaaatacaaaaattagctaagcatggtggttgcatgcctgtagtcccagctacctgggaggctgaggcagacggattgattgagcccaga
i nomLeu3.chr6                  C 0 C 0
s chlSab2.chr29                  20385718 91 -  24206276 aaaaatacaaaaattaggtggacattgtggttgcatgcttctagtcccagctacttggcaggctgaggcaggaggattgactgagcccaga
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65372747  0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=220430.000000
s hg38.chr15_KI270850v1_alt        116514 1169 +    430880 aagttgaggctgcagtgagctgtgatcacgctactgcactccagcctgggtgacagaacaaggccctgtctcgaaaattaaaaaaaaaaaaaaagaatgtctatgatgaagcagtgaatattttactatatctaaatcattgaatatatctttttaatatttcaagtgatgaaatgggaagtatacatgagcattcctacaggctgcctgaggaaaaacccttgagtgactaagtcttgaagtgaattaaccactttaatggaataccatttttacttgaaaggctgactgacaaaaaatgttattttaactcgcatttctggcagatattttc-tcaaaacatgagattctgtcatttcaaggaaaacaa-cagacaggctataataaaattcaataacaaaattactaataa---aattcaagcttttgaacaaaaaattagaattttagaaaacttatgcccaccatcgctttccaaaagtattctgatgagattgatggtggtactgatgaatgtattttgatactgta----caaatgtatcaacatgtagaagatcttagtgaaccactgttttataagtgaccaatgcacgatgttgtaatatcatgcaagggtggaagatccaaagttcaagaaaaaccaagatttgatggagtatcaaaaaagaagcctaggcaacatggcaaaaccctgtctctacaaaaaa--tacaaaaagttagccaagtgtggtggtacacacctgtagtcccagctactctggaggctgaggtgggaggatcaccttagtccctggagactgaggctgcagtgagctgtgatcacaccactaccttccagcctgggcaacagggcaagacctcatctcaaaaaaatatata-----------tatccacaatgatctaaaatggt-------------------------------tatctgtatgagattggcctttgttcaca-ttttttcaagaaaatatcacacaataaattgaatgcagaagcaaactgacatatcaatttgctaatgacatatcaaacatcatgcaaatgacatatcaaacatcaaaataatttgcaaaagatgtaagactgtactact---------ttgggtttagaaattttcttttcataaaagca--tttataacaatatgtggtgagcttttaaa----caatattttaaatatttctgatttaatttctagtgataaata
s nomLeu3.chr6                   25560682 1126 - 121039945 gggtcgagtcaccagtgagctgtgatcacgctactgcactccagcctgggtgacagaacaaggccctgtctcaaaaat-----------aaaaagaatgtctatgatgaagcagtgaaaattttactacatctgaatccttgaatatgtctttttaatatttcaagtgatgaaacgggaagtatacatgagcattcctacagactgcctgagaaaaaacccttgtgtgactaagtcatgaagtgaattaaccacttaaatggaataccatttttacttgaaaggatgactgacaa----tgttatttcaacttgggtttttggcaggcattttcctcaaaaaatgagattctgtcatttcaaggaaaaaaaacagacaggccataataaaattcaataataaaactgctaataataaaatacaagtttttgaacaaaaaattagaatttttgaaaacttgtatccaccactgttttccaagaatatcctgataacattgatggcaatactgatgaatgtattttgatactgtaaaatcgaatgtattaacacttagaagatctcggtgaaccattattttctaaatgaccaatgcatgatgttataatatcatgcaagggtaaaagatccaaagttcaagaaagaccaagttttgatggagtatcaaaaaagaagcctaggcaacatggcaaaaccctgtctctacaaaaaaaatacaaaaaattagcca-gtaagatggcctacacctg------------------------------------------agtcccaggacactgagggtgcagtgaactgtgatcacaccactgcactccagcctgggcaacacagtgagcccccatctcaaaaaaacaaaaaag-------aatatccacaattatctaaaatggccattaaaatattcagaatttttccaaccaggtatctgtatgaggttggattttgtttaca-ttatttcaagcaaatatcatacaacaaattaaatgcaaaagcaaa-------------------------------------------tgacagagcaaacatcaatgaaatttgcaaaaaatgtaagactgtgctactattctatttcttggcttagaaaattttgtttcataaaagcacatttataa---tatgtgacgagtttttaaagagttaatgttttaaatattcctgatttaacttctagcaataaata
i nomLeu3.chr6                  C 0 C 0
s chlSab2.chr29                  20385809 1128 -  24206276 aggttgaggctacagtgagctgtgatcatgctactgcacttcagcctgggtgacagaacaaggccctgtctcaaaaat-----------aaaaagaatgtctatgatgaagcagtgaaaattttac---atcttaatccttgaatatatctttttaatattttatgtgatgaaatgggaagtacacatgagcattcgtacagactacctgagaaaaaacccttgggtaatcaagtcatgaagtgaattaaccactttaatggaatatcatttttacttcaaaggatgactgacaaaaaatgttatttcagcttgggttttgg--agacattttc-tcaaaaaaggagattctgttatttcaaggaaaacaa-cagagaggccataataaaattcaacaataaaattgctaataataaaactcaagcttttgaacaaaaaattagaattttagaaaacttatgtctaccattgctttccaaaagtattctgatgagactgatggtgatattaatgaatgcattttgatactgtataatcaaatgtatcaacatatagaagatctcagtgaacgattatttttgaagcgaccaatgcatgatgttataatatcatgcaagggtaaaaaatccaaagttcaagaaaaatcaagttttgatggagtatcaaaaaaGAAGTCAAGGcaacatggcaaaaccctgtctctatgaaaaa--tacaaaaaaatagctaggtgtggtagtacacacctgtagtcccaactactgtggaggctaaggtgggaggatcacctgagtccccagagactgaggctccagtgatccatgaccataccactgcattctagcctgggcaacagagcaagaccccatctcaaaaaaaagaaaaagaaaaagaaataTCCACAATGATCTAAAATGGC-------------------------------TAtctgtatgacactggcctttgttcaaatttttttcaagcaaatatcacacaataaattgaatgcagacacaaa-------------------------------------------tgacataccaaacaccaaagaaatttgcaaaagat-taagattgtactact---------ttgggtttagaaattttcttttcataaaagca--tttataacaatatttggtgaacctttaaa----gaatattttgaatatttctgatttaatttctagtgataaata
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642    0 - 162156779 I
e macFas5.chr7                   65372747    0 + 171882078 I
e ponAbe2.chr15_random            9400985  746 +  10928107 M
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=196149.000000
s hg38.chr15_KI270850v1_alt        117683 410 +    430880 ccaatagatataccctacataaaccaaagctccttgggacctcaatgtatttttaagagtgtaaaggaatcctgaccccaaaacttggagaactgctgCCTTCCCCTCCACTTT-CTTCCTTCTCTAGAATTTCTTCCTTGGAAGAAACATCCCTTTGCCATTCTATATTAACTTACATAGTTCCACTGAGGCAAGTTTTGCTACCTCCCTCCCATCTTTCCACCTCTCTCTC--AACACAAAACCTGACCAAAGCATTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAACAAATCTGGGTTTTCCCTGAGACTAGACCTCTCTTTCTGGGAGAGATGGAATCACAGGGACAAGGTTGGCCACCTTGGGGTAGTGAGAATTCATCCTGCCTA
s ponAbe2.chr15_random            9401731 410 +  10928107 CcaatagatataacctacataaaccaaagctccttgggccctcaatatatttttaagagtgtaaaggaatcctgaccccaaaacttggagaactgctgCCTTCCCCTCCACTTT-CTTCCTTCCCTAGAATTTCTTCCTTGGAAGAAACATCCCTTTGCCATTCTATATTAACTTACATAGTTCCATTGAGGCCAGTTTTGCTACCTCCCTCCCATCTTTCCACCTCTCTCTC--AATACAAAACCTGACCAAAGGATTCTACCGGCCCACCCCATTTCCAGTGATCAGCTGTCAGGTGGGCTAAGCCAAGCAAATCTGGGTTTTCCCTGAGACTGGACCTCTCTTTCTGGGAGAGATGGAATCACAGGGACAAGGCTGGCCACCTTGGGGTAGTGAGAATTCATCCTGCCTA
i ponAbe2.chr15_random          M 746 C 0
s nomLeu3.chr6                   25561808 412 - 121039945 ccaatagacataacttacataaaccaaagc-ccttaagtcctcaatatattttcaagagtgtaaaggagccctgaccccaaaactttgagaactgctgCCTTCCCCTCCACTTTCCTTCCTTCCTTAGAATTTTTTCCTTGGAAGAAACATCCCTTTGCCATTCTATATTAACTTACACAGTTCCATTGAGACCAGTTTTGCTACCTCCCTCCCATCTTTCCTCCTCCCTCTCTTGACACAAAACCTGACCAAAGGACTCTATCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGAAAATCTGAGTTTTCCCTGAAGCCAGACCTCTAGTTCTGGGAGATCTGGAATCACAGAGACAAGGCTGGCCACCTTGGGGTGGTCAGAATTCATCTTGCCTA
i nomLeu3.chr6                  C 0 C 0
s chlSab2.chr29                  20386937 411 -  24206276 ccagtagatatcacctacatacagaaaagctccttgggccctcaatatatttttaagagtgtaaaggaatcctgaccccaaaactttgagaactgctacCTTCCCCTCCACTTT-CTTCCTTCCCTTGAATTTCTTCCTTGGAA-AAACATTCCTTTGCCATTCTACGTTAACTTACTTAGTTCCATTGAGGCCAGTTTTGCTACCTCTCTCCCGTCGTTTCACATCCTTCTCTTGACACAAAACCTGACCAAAGGAGTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGCAAATCTGAGTTTTCCCTGAGACTAGACCTCTCTTTCTGGGAGATATGGAACAACAGGGACGAGATTGGCCACCTTGGGGTAGTCAGAATTCATCTTGCCTA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=156467.000000
s hg38.chr15_KI270850v1_alt        118093 719 +    430880 AACAGGGAGAATTCAAACAAGTTTCTAGAAAGCCAAACTACTTTCTAGAAAGTCAAAGATAATTATATTTTTTGCCATGACTGTAAGAATGCCCATTTCATTGCACACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGTACTGAGATGAAAAAAAggctgggcacagcggctcacacctgtattcccaacactttgggaggctgaagtgggcaaatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaactccgtttctactaaaaatacaaaaattagccaggcatggtggcatgcgcctgtaatctcagctactcgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagt-----gagatcacgccattgcactccagcctgggtgacaagaacaagacttcatctcaaaaaaaaaaagaaaaaaaaaagaaaaaaaaaGTTCCCATACAATATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAACTGAAAGTCACCACGTGGAAGGTTTCAAGGATTTACGTCTACCTACTGATGTCTAAAGCATTAGTTAAGTTAC---AAAAAAATacgcacacacgcgcacgcacacacacaca----tacCCGTATGTATTCAGTACCAGAAAACATGACTGACTACATGGTAAAGTCATCCAACAGAAAGCACACAATAACTGAAGGC
s ponAbe2.chr15_random            9402141 713 +  10928107 AACAGGGAGAATTCAGACAAGTTTCTAGAAAGCCGAACTACTTTCTAGAAGGTCAAAGATTATTATACTTTTTGCCATGACTGTAAGAATGGCCATTTCATTGCACACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGATACTAAGATGAAAAAAAggctgggcacagtggctcacacctataatcccaacactttgggaggctgaggtgggcaaatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaactccatctctactaaaaatacaaaaattagccaggcatggtggcatgcgcctgtaatctcagctattcgggaggctgaggcagcagaattgcttgaacccaggaggtggaggttgcaatgagccgagatcacaccattgcactccagcctgggtgacaagaacaagacttcatctc------aaaaagaaaaaa-----gaaaagaaaGTTCCCACACAATATAATTTCttccatttctagaaacaaattcagcaatgagaactgaaagtcaccacgtggaaggtttcaaggatttaggtctacctactgatgtctaaagcattagttatgttag---aaaaaaatacgcacacacacgcgcacgcacacacaca----cacccctatgtattcagtaccagaaaacatgactgactacatggtacagtcatccaacagaaagcacacaataactgaaggc
i ponAbe2.chr15_random          C 0 C 0
s chlSab2.chr29                  20387348 705 -  24206276 AATGGGAAGAGGTTAGGCAAGTTTCTAG-AAGCCAAACTGCTTTCTGGAAAGCCAAAGATAATTATACTTTCTGCCACGACTGTGAGAATGCCCATTTCATTGCACACTTTCTAATATTTTTACCAATCTGATAAGTAAAAGCTGGTACCTAGAAGAAGAAAAggccgggtgtggtggctcatgcctgtaatcccagcactttgggaggccaaggtgagtggatcacccaaggtcaggagctccagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggcaggctcctgtaatccctgctactcgggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgtagtgagccaagatcatgccactgcactccagcctgggcgacaagagcgagactttatctc-----------------a-----aaaaacaaaTTTTCCATACAATATAATTTGCTCCATGTCTAGAAACCAATTCAGCAATGAGAACTGAAAGCC-CCACTTGGAAGGTTTCAAGGATTTAGCTCTACCTATGGATGTCCAAA-CATTAGTTAAGGTAGAAAAAAAAAATacacacacacacacacacacacacacacacaTTCACCCCTATGTATTCAGTACCAGGAAACACAA-TGACTAGACGGTACAGTCATCCAACACAAAGCACACAATAACTGAAGGC
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25562220   0 - 121039945 C
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=326316.000000
s hg38.chr15_KI270850v1_alt        118812 775 +    430880 AATGTAGAGGAGTAAGTTATAACATGGATCTACAatactgttgagtgaaaaagcagattacaaacaa-atatctga-tttttaagggagaggaaacatatacaagcacaggagaaaagaggtgagcagatgactggaaagatacaaatttctgacagtggcaccttctgagtggtagaattacataggtaatattttctagttttgcctaaaagttttctaaatttcttaaaataagaaggttttgttttccatattacaaaaTATCCATCACCCCAGGAAATTTAACCTTTGGCACAAACTCTACAACATGTTCAAAGTTTGTTCAGTTGAATATTTAAGAGACAATCTATTTTGAAAGACATTTAA---AATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCAC--GTTTTAAATTTTGTAATTTTGA----------TAAGTTTTAGATCCATCTTGAAAAGATAAATTTT-CTGTTTGTCTTTA----AAATATTACCTACAATATGCCTGTTTTTATACAGTTAATGGTGCTCAAAAATCGCAATATAAATTCAGGCAGTGTTCCT-TCTATAGAATGTGTAAGTGCTTCTAATACTGCTCTTTTTCAC--CAGTTATGAAAACACGGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCATTCTGTTAGTTTTATACTAATTTCAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATAAGCAGACAAATTTCCAGCAAGTTTATCACCACTAC
s ponAbe2.chr15_random            9402854 783 +  10928107 aatgtagaggagtaagttataacatggatctacaatactgttgagtgaaaaagcagattacaaacaa-atatctga-tttttaagggagaggaaacctatgcaagcacaggagaaaagagaagagcagatgactggaaagatacaaatttctcacagcgacaccttctcagtggtagaatgacataggtaatgttttctagttttgcctgaaagttttctaaatttcttaaaataagaaagttttgttttccatattacaaaaTATCCATCACCCCAGGAAATTTAACCTTCAGCACAAACTCTACAACATGTTCAAAGTTTGCTTAGTTTAATATTTAAGAGACAATCTATTTTGAAAGACATTTAA---AATGACCAATATTTACACCTATGCATTAATATTTT---TCAGTCACATGCTTTAAATTTTGTAATTTTGATAAGG----CTAAGTTTTAGACCCAACTTGAAAAGATAAATTTT-CTATTTGTCTTTA----AAATATTATCTACAATATGCCAGTTTTTAAACAGTGAATGGTGCTCAAAAATCACAATATAAATTCAGGCAGTGTTCCT-TACATAGAATGTTTAAGTGTTCCTAACACTGTTCTTTTTCAC--AAGTTATGAAAACACAGAACAATCACCTAAGCAGCTAATTATTCAGGTCCTTTGTTTCTCCTCCATTCTGTTAGTTTTATACTAATTTCAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATCAGCAGACAAATTTCCAACAAGTTTATCACCACTAC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25562220 794 - 121039945 AATATA-AGGAGTAAGTTATAACATGGATCTACAATATTGTTGAGTGAAAAAGCAGATTACAAAAAA---ATCTGATTTTTTAAGGGAGAGGGAACATACATAAGAATCAGAGAAAAGAGATGAGCAGATAACCGGAAGGATACAAAATTCTGATAGTGGTATATTCTGAGTGGTAGAATT--ATAAGTAATATCTCCTAGTTTTGACTAAAA-TTTTTTAAATGTCTTACAATAAGAAGGTTTTGTTTTCCATATTATAAAATATCCACCACGCCAGGCAACTTAACCTTCAGCACAAACTCTACATCATGTTCAAGGTTTGTTCAGCTTAATATTTAAGAGACAATCTACTTTGAAAGACATCTAAAATAATGACCAATATTTAAACCTATGCATTAATATTTTCAATCTTTCACATGCTTTAAGTTTTGTAATTTTGATAAGGTTAACTAAGCTTTATATCCATCTTGAAAAGATAAGTTTTCCTATTTCTCTTTAAAATAAATATGACCTACAGTATATCAGTTTTTAAACAGTGAATGGTGCTCAAAAATCCCAATACAAATTCAGGCAGTTTTCCCGTACATAGAATGTTTAAGTGCTTCTAGCACCGCTCTTTTTCACCACAGTTATGAAAACA--GAACAATTATCTAAGCATCTAATTACTCAGGTCCTTTGTTCCTCATCCATTCTATTAGTTTTATAGTAATTTTAACGCCTGTGAGGATGAAGTTGTCTCTGACAGCTACCATAAAGATTATTGTAAGTGGACAAATTTCAAACAAGTTCATCACCACTAC
i nomLeu3.chr6                  C 0 M 1566
s chlSab2.chr29                  20388053 760 -  24206276 ACTGTAGAGGAGTAACTTCTGACACGGATCTACAATACTGTTGAGTGAAAAAGCAGATTACAAAAAAAAAATCTGATTTTGTAAGGGAGAGGGAACACATACAAGCACAGGAGAAAAGAGATGAGCAGAGGACTGGAAAGATACAAAATTCTCATGGTGGCACATTCTGAGTGGTAGAATT--ATCGGTATGATTTTCTAGTTTTGCCTAAAAATTTTCTAAACTTCTTAAAATAAG---TTTTTGTTATACATATTATAAAATATCCATCACCCCAGGAAATTTAACCTTGAGCACAAA--------CATGTTCAATGTTTGTTCGGTTTAATATTTAA---------------GAAAGACATCTAAAATGATGACTAATATTTAAACCTATGCATTAATATTTT---TCAATAATATGCTTTACATTTTATAATTTTGATAAGG----TTAAACTTTATATCCATCTTGAAAAGATAAGTTTT-CTATTTGTCTTTA----AAATATGACCCACAATATGCCTGTTTTTAAACAGTGAATGATGCTCAAAAATCGCAATATAAATTCAGGCAGTGTTCCT-TACATGGAATGTTTAAGGGTTTCTAACACTGTTCTTTTTCAC--CGGTTATGAAAACACAGAACAATTATCTACACATCTAATTATTCAGGTCCTTTGTTTCTCCTCCATTCTATTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGTTACCACAAAGGTTACTATAAGCAGACAAATTTCAAACAAGTTTGTCACCGCTAC
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=11910.000000
s hg38.chr15_KI270850v1_alt        119587 46 +    430880 CAT-CCCACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGG
s ponAbe2.chr15_random            9403637 47 +  10928107 CATCCCCACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGG
i ponAbe2.chr15_random          C 0 C 0
s chlSab2.chr29                  20388813 47 -  24206276 CATCCACACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGG
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65372747  0 + 171882078 I
e nomLeu3.chr6                   25563014 1566 - 121039945 M
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=105493.000000
s hg38.chr15_KI270850v1_alt        119633 240 +    430880 TTAGTCAAGACAACCTCTTTACCTGTCACTGCTTAAGAAAAGGA-TTTTTTGGTCTTATTTAGAAATAACTT----TATCTATTTTTCTCCATAATTCCACTGAGACCAATGTGTGCCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTG-CCAGTATGTTCAGTTTTTGTATCTTTCCAAATGTAGGGCACAGCTATCTTTTGATA--TCATAATTTTTTGAAAACTGATGCACAAACTTCTTCTT
s ponAbe2.chr15_random            9403684 245 +  10928107 TTAGCCAAGACAACCTCTTTACCTGTCACTGCTTAAGAAAAGGATTTTTTTGGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCATAAATCCACTGAGACCAATGTGTGCCTCTATCTGAAGCACCAGCAAGCAAAACTGCCTG-CCAGTATGTTCAGTTTTTGTATCTTTCCAAATGTAGGGCACAGCTATCTTTTGATA--TCATAATTTTTTGAAAACTGATGAACGAACTTCTTCTG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25564605 240 - 121039945 TTAACCAAGCCAACCTCTTTACCTGTCACTGCTTAAGAAAAAGA-TTT----GTCTTATTTAGAAGTAACTTTCTGTATCTATTTTTCTCCATAAATCCACTGAGACAATTGTGTGGCTCTATCTCAAGCACCAGCAACCAAAACTGGTTGATCAGAATGGTCAGTTTTTCTATCTTTCCAAATGTAGGACACAGCTATTTTCAGAGATTTCGTAATTTTTTTAAAACTGATGCACAAACTTCTT---
i nomLeu3.chr6                  M 1566 C 0
s chlSab2.chr29                  20388860 244 -  24206276 TTAGCCAAGACAACCTCTTTACCTGTCACTGTTTAAGAAAAGGA-TTTTTTGGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCACAAATCCACGGAGACCAACGTGTGGCTCTATCTCAAGCACCAGTAGGCAAAACTGCCTG-CCAGTATGCTCAGTTTCTGTATCTTTTCAAATGTGCAGCACAGCTATCTTTTGATA--TCATAATGTTTTGAAAACTGAAGCACAAACTTCTTCTT
i chlSab2.chr29                 C 0 I 315
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=5310.000000
s hg38.chr15_KI270850v1_alt        119873 10 +    430880 GAAAGTTCAg
s ponAbe2.chr15_random            9403929 10 +  10928107 GAAAGTTCag
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25564845 10 - 121039945 GAAGGTTCAG
i nomLeu3.chr6                  C 0 I 5
s chlSab2.chr29                  20389419 10 -  24206276 GAAAGTTCAg
i chlSab2.chr29                 I 315 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65372747  0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=71178.000000
s hg38.chr15_KI270850v1_alt        119883 310 +    430880 ccaggtgcggtagctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggaattcaagaccagcctggccaacatggtgaaacctgtctctactaaagctacaaaaattagccaggtgcggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggcagcagaggttccagtgag-ccaagattgcaccactgtactccagcttgggtgatagagtgagactccatctcaaaataaaaaataaaaaaaagaaTTTCAGATAT
s ponAbe2.chr15_random            9403939 306 +  10928107 ctaggcgcggtagctcacgcctgtaatcccagcactttgggatgctgaggcaggcagttcacgaggtcaggaatttaagaccagcctggtcaacatggtgaaacctgtctctaccaaaactacaaaaattaaccaggggtggtggcaggtgcccgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacctgggcggcagaggttccagtaag-ccaagatcgcaccactgtactccggcctgggtgatagagtgagactccatctcaaaat----aataaaaaaaagaaTTTCTGATAT
i ponAbe2.chr15_random          C 0 C 0
s chlSab2.chr29                  20389429 304 -  24206276 tcgggctcggtagctcacgcctgtaatcccagcacttcaggaggccaaggcaggcagatcacaaagtcaggagttcaagaccagcctggccaacatgg-------ggtctctactaaaactacaaaaattagctgggtgcggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttaaacctgggcagcagaggttccagtgagcccgagatcgcgccaccgcactgcagcctgggtgatagagtgagactccatctcaaaattaaaaaaaaaaaaaagaaTTTCAGATGT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25564855   5 - 121039945 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=243799.000000
s hg38.chr15_KI270850v1_alt        120193 570 +    430880 ACAGCAGTTGTAATTCTTCTGAAGGCTGCTTATGGGACACATTACTTTCATAATTTGCTGTTCAATAAATGTGGGGTGGAGAATAAAGTAAATTGACAGAATTACCATATAA------AATAAAATTCTAAGTCCTCTGACAACAA---AAACTTacacacacacacacacacacacacacacacacacacacacacacacaGCTTTCCCTGCTAATCATTTTAC-----AACAACCAAGTAGCTAACCCAGAGCCCACAAAAGCAGAGTCAAAATTCTAACACTTGGTAAAATAAAAATGCACATATATCCCTGTCACCTAAAAAAAAATGCTTACGTATTCAA----AGACAGC-AATTGTAGCTACTGAGAACATCATTGTAAGCAAACTGAGGCAGAGAAAACAAACGTGCTGATGAGGATTTGAAACACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAGTTGGCATTATCTTTCAGAACGATCTTCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCACTCTGGCTCTCCAGTCATGCTTTACA
s ponAbe2.chr15_random            9404245 559 +  10928107 ACAGCAGTTGTAATTCTTCTGAAGGCTGCTTATGGGACACATTACTTTCATACTTTGCTGTTCAATAAATGTGGGGTGGAGAA-----TAAATTGACATAATTACCATATAA------AATAAAATTCTAAGTCCTCTGACAACAAAAGAAACTTATA-----------------acacacacacacacacacacgcacacaGTTTTCCCTGCTAATCATTTTACATCTAAACAACCAAGTAGCTAACCCAGAGCCCACAAAAGCAGAGTAAAAATTCTAACACTTGGTAAAATAAAAGTGCACATATATCCCTGTCATCT-AAAAAAAATGCTTAAGTATTCAAAGACAGACAGC-AATTACAGCTACTGAGAACATCACTGTAAGCAAACTGAGACAGAGAAAACAAAGGTGCTGATGGGGATTTGAACCACCTAAGTTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAGTTGGCATTATCTTTCAGAACGATCTTCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCACTCTGGCTCTCCAGTCACGCTTTACA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25564860 542 - 121039945 ACAGCAGTTGTAATTCTTCTGAAGGCCAGTTATGGGACACATTACTTTCATACTTTGCTGTTCAATAAATGTGGGGTGAACGA---AGTAAATTGACAGAATTAGCATATAGTACCTTAATAAAATTCTAACTGCTCTGACAGCAAAAGATACTTAAA-----------------ATACATACATG------------------TTTCCCTGTTAATCATTTTACAAATAAACAACCAAGTAGCTAACCTAGAGCCCACAAAAGCAGAGTAAAAATTCTAACACTTGTTGAAATAAAAATGCTTATATACCCGTGATAA---AAAGAAAATGCTTAAGTATTCAAACACAAGCAGCAAATTACAGCTACTGAGAACATCGTTGTAAGCAAACTGAGGCACAGAA---AAAGGCGCTGATGAGGATCTGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCAAGTTGGGATTATCTTTCAGA---ATCTTCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAAAAAGGGACCCCTGCTTTATCACTCCGGCTCTCCAGTCATGCTTTACA
i nomLeu3.chr6                  I 5 I 1396
s chlSab2.chr29                  20389733 569 -  24206276 ACAGCAGCTGTAATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCATACTTTGTTGTTCAATAAATGTGGGGTGGAGAATAAAGTAAATTGTCAGAATTACCATATAA------AATAAAATTCTAAGTCCTCTGACAACAAAAGAAACTTAAA---------ATacacacacacacacacacacacacacacacacaGTTTTCCC---TAATCATTTTACAACTAAA-AACCAATAAGCTAACCCAGAGCCCACAAAAGCAGAGTAAAAATTCTATCTCTTGATAAAATAAAAATGCACATATATCCCTGTCATCTAAAAAAAAATGCTTAAGTATTCAAAGACAGACAGC-AATTATAGCTACTGAGAACATCATTGTAAGCAAACTAAGGCAGAGAAAACAAAGGTGCTGATGAGGATTTGAACCACCTAACCTGCAGAAACCCACTAGATGGTTTCCTAGGTTCCAAGTTGGCATTATCTTTCAGAACGATCTTCTAGAAAAGATTACATAACACTGTTACAAAGGATCTGGGGAAAGGGATGCTGGCTTTATCACTCTGGCTCTCCAGTCATGCTTTACA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=236620.000000
s hg38.chr15_KI270850v1_alt        120763 530 +    430880 TTTTCACTTCTTACACTCTCTTTCATAGGAAGTCAATTTACAGGCTTCCA--CCAAGCCCTTAAGTGACGTTTTTGTACTATCCATGACAAGTTCTTGATGTTATGTCTGCACTTCTGACAAATTCTTAGCAGTTAACTTACTAGGCAGTTAAGGTTTTTGTTCAAGCACAATATAGCTAGAATAGGGTCATACATTCAATAAAACAAATATTTACCAAGCATTTATTGAGTGGAAGATAAAAAGCACAAAGCATAATTATAAAACATTCTCCCCTGCCACCAT--AAAAATTTTTTTAAAGCCTTACAGAATATAGCAT-----AACATAACCAAAGCAAAAAT----AGGACTAAAGAGGGGAGGAAGGGGAAATATCAGCATGAATTAAATATGACCCAGAAGAGCCTT----GATGGTCAGACACGTAAAGACAAATTGGGTAGGGTTAGGGGGTGGCTGTCAGGGGCACATTCTACAGGGGAAAA-ACAGCTGATACAGAAGCCTGAAAGGAAAACCGGGCAGAGCACCTGGACAGGACTCTT
s ponAbe2.chr15_random            9404804 534 +  10928107 TTTTCACTTCTTACACTCTCTTTCATAGGAAGTCAATTTACAGACTTCCA--TCAAGCCCTT-AGAGACCTTTTTGTACTGTCCATGACAAGTTCTTGATGTTATGTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTATGAGGCAGTTAAGATTTTTGTTCAAGCACAATATAGCTAGAATAGGGTCATACATTCAATAAAACAAATATTTACCAAGCATTTATTGAGTGGAAGATAAAAGGTACAAAGCATAATTATAAAACATTCTCCCCTGCCACCATAAAAAAATTTTTTTAAAGCCTTACACAATACGGCAT-----AACATGACCAAAGCAAAAATAGTCAGGACTAAAGAGGGGAGGAAGGGGAAATATCAGCATGAACTAAATATGACCCAAAAGAGCCTT----GATGGTCAGACACGTAAAGACAAATTGGGTAGGGTTAGGGGGTGGCTGTCAGGGGCACATTCTACAGGGGAAAA-ACAGCTGATACAGAAGCCTGAAAGGAAAG-CGGGCAGAGCACCTGGACAGGTCTCTT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25566798 532 - 121039945 TTTTCACTTCTTACACTC----TCATATGAAGTCAATTTACAGACTTCCATCTCAAGCCCTT-AGAGCCATTTTTGTAC-ATCCATGACAAGTTATTGATGTTATCTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTCAAATACAATACAGCTAGAATAGCGCCATATACT--------CAAATATTTATGAAGCATTTATTGAGTGGAAG--AAAAAGCACAAAGCATAATTATAAAATATTCTCCCCTACCACCATAAAAAGAAAAACTTAAAGGCTTACAGAATACAGCATAAGAAAACATGACCAAAGCAAAAATAGTAAGGACTAAAGACGGGAGGAAGGGGAAATAACAGCATGAACTAAATATGAGCCAGAAGAGCCTTGAGGGATGGTCAGGCATATAAAGACAAATGGGTTAGGGTTAAGGGGTGGAGGTCAGGGGCACATTCTACAGGGGGAAATACAGCTGATACAGAAACCTGATAGGAAAAGCCGGCAGAGCACCTGTACAGGACTCTT
i nomLeu3.chr6                  I 1396 I 2398
s chlSab2.chr29                  20390302 535 -  24206276 TTTTCACTTCTTACACTCTCTTTCATATGAAGTCAATTTACAGACTTCCA--TCAAGCCCTT-AGAGACCTTTTTGTACTATCCATGACGAGTTCTTGATGTTATCTCTGCACTTTTGACACATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTCAAGCACAATATAGTGACAATAGGATCACACACTTAATAAAACAAATATTTACCAAGCATTTATTCAGTGGAAGATGAAAAGCACAAAGTATAATTATAAAATATTCTCCCCTGCCACCATTTAAAAAAAAGTAAAAAGGCTTACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTAAGGACTAAAGAGGGGAGGAAGGTGACATATCAGCATGAACAAAATATGACCCAGAAGAGCCTT----GGTGGTCAGACATGTAAAGACAAATTGGGTAGGGTTAGGGGGCGGCTGTCAGGGGCACATTCTACAGGGGAAAA-ACAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGATCACCTGTACAGGACTCTT
i chlSab2.chr29                 C 0 I 1
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=88675.000000
s hg38.chr15_KI270850v1_alt        121293 198 +    430880 ACCTGCTGCATCCAGGGTACAATGCGCCTTTCCAGAACACAGCAGC---------GACCCGGGGTAGAGGGATCGCTCAAACAGCACCAGAGGCTGCATTCCAACTTTTCCTCCATCAACGAGTCCGTTTTCATTGTTAGTTTCTCCTTAAAC------------ACGATTGGCTGAACATGCGGGAACAAGGAAAACCTGACTGAAGAACGAGGCATT
s ponAbe2.chr15_random            9405338 198 +  10928107 ACCTGCTGCATCCAGGGTACAATGCGCCTTTCCAGAACACAGCAGC---------GGCCCGGGGGAGAGGGATCGCTCAAACAGCACTAGAGGCTGCATTCCAACTTTTCCTCCATCAACGAGTCCGTTTTCATTGATAGTTTCTCCTTAAAA------------ACAATTGGCTGAACATGCGGGAACAAGGAAAACCTGAGTGAAGAATGAGGCGTT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25569728 219 - 121039945 ACCTGCCGCATCGACGGTACTATGCGCCTTTCCAGAACACAGCAGCGCGCAGCCAGGCCCGGGGGAGAGGGGTCGCTCAAACAGCACCAGAGTCCGCATTCCAACTTTTCCTCCGTCAACGAGTCCATTCTCATTGTCAGTTTCTCCTTAAACGCAAACTTAAAAACAACTGGCTGAACAAGCGGGAACAACGAAAATCCGATTGAAAACTGAGGCGTT
i nomLeu3.chr6                  I 2398 C 0
s chlSab2.chr29                  20390838 209 -  24206276 ACCTGCCGCATCCACGGTACAATGTGCCTTTCCAGAACATAGCGGC---------GGCCCGGGG-ACAGGGATTGCTCAAACAGCACCAGAGGCTGCATTCCAACTTTTCCTCCCACAACAAGTCCGTTTTCATTGTTAGTTTCTCCTTAAACACAAACTTAAAAACGATTGGCTGAACACGAGAGAACAAGGAAAACCTGACTGAAGAATGAGGCCTT
i chlSab2.chr29                 I 1 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=107148.000000
s hg38.chr15_KI270850v1_alt        121491 418 +    430880 TAAGCTTAAGGGCCTT--GGATctgggcgcggtggctcaggcctgtaatcccagaactctgggaggcagagatgggtcatttgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaacaacacaaaacttagccaggcgtggtggcgggcgcccgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccacagactgtcaagagatggaggctgcagtatgccgagatcgctccactgcactccagcctgggcgacagagtgagactccatctcaagaagcgcctgccaccatgcccggctaatttttgtatttttagtagagacagggttttaccatgttggccaggctggtctagaactcctgacctcaggagatccagctgc
s ponAbe2.chr15_random            9405536 418 +  10928107 TAAGCTTAAGGGCCTT--GGATCAgggcgcggtggctcaggcctgtaatcccagaactttgggaggcagagatgggtcatttgacgtcaggagttcgagaccagcctggccaacatgatgaaacccggtctctactaaacaacacaaaagttagccaggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccatggactgtcaagagacggaggctgcagtaagccgagatcgccccactgcactccagcctgggcgacagagtgagactccatctcaacaagcgcctgccaccatgcccggctaatttttgtatttttagtagagacagggttttaccatgttggccaggctggtctagaactcctgacgtcaggcgatccatctgc
i ponAbe2.chr15_random          C 0 M 606
s chlSab2.chr29                  20391047 419 -  24206276 TAAACTTAAGGGCCTTTGGGGTccgggcgcggtggctcaggcctgtaatcccagaactttgggaggcagaggtgggtcatttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaacaacacaaaagttagccaggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcagcagaatcgcttgaagccatggactgtcaagggacagaggctgcagtaagccaagatcgccccactgcactgcagcctgggcgacagagtgagactccatctcaacaagcgcctcccatcatg-tcggttaatttttgtatttttagtagagacagggttttaccatgttggcctggctggtctagaactcctgacctcaggtgatccacccgc
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e nomLeu3.chr6                   25569947   0 - 121039945 C
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=5290.000000
s hg38.chr15_KI270850v1_alt        121909 60 +    430880 ctcagtctcccatagtgctgggattacaggaatgagcactgcgcccggccAAAAAACCGA
s chlSab2.chr29                  20391466 60 -  24206276 ctcaacctcccaaagtgctgggattacaggaatgagcactgcgcccggccaaAAAACCGA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65372747  0 + 171882078 I
e nomLeu3.chr6                   25569947  0 - 121039945 C
e ponAbe2.chr15_random            9405954 606 +  10928107 M
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=107420.000000
s hg38.chr15_KI270850v1_alt        121969 636 +    430880 AAATCTTAAAGGCCTTTCCCCTTCCCTCACTGGGCTCAAACAACAGCGGGAGC-----CGCCCTGCCACGCCCCGTCGCGGTCCAGGGGAGCAGGCTAGCTGACTGAGGGCGATCATGGG-CCCCAACAGGTCTGCGGGCGACGCGGGCTCCCACCTCAGGGCGCAGCGACTGGGGC-GAGAGGTGCCGGCAGCCCCCAAGCCAGCCCCGCGGCAAGGAGCCAGAGAGACGCGCCCTCCCCCTCCTCCCACGCAAGCCTCA-------CACAGC-------GGGGCGGGCCAGACGCGGGAGAAA-GGGGCGCGCTCGCCCCGCCTGGGGAACCGGGGCCTCTCCCGGGCAGGCTCCCCTTTGTCCCGGGACTCTGGGCGCCTCCTCTCCGCCCTCGCCCTGGCCCGTGAGGCCGCCACTGGGCGCCTCACCGTGATGTTGCAGTGGAGCGTGAGCTGTGGCGGGG------------------------------------------------------------------------------GCTCCTGGTTCTTGTGGAAGATAGAGGCCAACAACCTCAGCTTGGCCTTGAACCCTCACACGGACATTTTACTCTCACCTCTGGCGGGAGGGGCGCGGAAGGTGAGCC-CGTCGGGAGCCGCTGTCACGGCCGCAACCA-CCCGCGGGACC--TCTCGGCGGCGCTCTCCCAGCTCCGCCTCTCCCTGCTGCCTCA
s nomLeu3.chr6                   25569947 722 - 121039945 AAAACTTAAGGGCCGTTTCCCTTGCCCGCCTGGGCTCAAACAACAGCCGGAGCTgcgccgccccgcccagccccgccccgGTCCCGGG-AGCAGGCCGGCTGA----GGGCGGCCATGGA-CCCCACCAGGGATTGGGCCGCCGCGGACTCCCACCTCGGGGCTAGGAGACGGGGACCGAGATGGGCCAGAAGCCCCCAAGCAAGCCCCGCG-CGAGAAGCCGAAAAGACGCGCCCTCCGCCTCCTCCCCCCCAAGCCTAAGCGCAGTCCCAGCCCGACCTGGGCTGGGCCAGTCGCGGGGGAAAAGGGGCGGGCCTGCCCCGCCCGGGAAGCCGGAGCCTCTCCGGGGCAGGCTCCCCTTTGTCCCGGGACTTGGAGCGCTCCCTCTCCGTCCTCGCCCTGCCCCATGGGGCCGCGGCCGGGCGCCTCACCGTGATGTTGCAGTGGAGCGTGAGTGGCGGCGGCGGCGAGTGCGGGCTGCCCGGCTGCGGCACCAGGAACTGGCAGTGCAGCTCGTCCAGCTTCCAACTGACGATGCGGAATCGCTCGTGGTTCTTGTCGAAGATGGACGCCAGGAACTTCAGCTCGGCCTTGAGCCCCGACACGGACATCTTCCCCTCATCTCCAGCGGGAGGGGCGCGGAAGGggagccgggaccggagccgccgtcacggccgcgaccgccccgcggggccggcctgggccgCGCTCTCGCGGCTCCGCCTCGTC-----------
i nomLeu3.chr6                  C 0 C 0
s chlSab2.chr29                  20391526 643 -  24206276 AAATCTTAAAGGCCTTTCCCCTTCCCCGCCTGGGCTCAAACAACAGCCAGAGC-----CTACCTGTCATGCCCCGTCGCTGTTCCGG--AGCAGGTCGGCTGACTGAGGGCGACCATGGGCCCCCGAAAGGGCTGCGAGAGACGCGGGTTCCCACCTCGGGAAGCGGCCACCAGGGC-GAGAGGTGCCAGCATCCCCCAAGCCAGCCCCGCG-CAAGGAGCCAGAGAGACGCACCCTCCGCCTCCTCCTACCCAAGCCTCC-CGCAGTCCCCGC--GATCTGGGCCAGGCCAGTCGCAGGAGAAA-GGGGCGCGTTGGCCCAGCCCGGGGAACCGGGGCCTCTCCGGGGCAGGCTCCCCTTTGTCCCGGGACTCCAGGAGCCTCCTCTCCGCCCTCGCCCTGACCCGCGAGCTCGCGGCTGGGCGCCTCATCATGATGTTGCAGTGGAGCGTGAGCTGCGGCG---------------------------------------------------------------------------------GCTCCTGGTTCTTGTGGAAGATAGAGGCTAGCAACTTCAGCTTGGCCTTGAACCGTGACACAGACATCTTACCCTCATTTCCGGCGGGAGGGGCGCGGAAGGTGAGCC-GATCCGGAGCCCCTGTCATGGCCAGGACCACCCGGCAGGACA--GCCCGGCGGAGCTCTGGCCGCTCTGCCTCTCCCCACTGCCTCC
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e ponAbe2.chr15_random            9405954 606 +  10928107 M
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=52650.000000
s hg38.chr15_KI270850v1_alt        122605 114 +    430880 ACTCTATTCGGAGTAGGGCTGGAAAATGGCAAGGGGCACCGAGGCCTCTGCGGGGAGCTGTGTGGCGGCCTGGGCGGCTGCTCCCCTTGTAACAGACTCCACCGACAGGAGGCG
s ponAbe2.chr15_random            9406561 114 +  10928107 ACTCTAGTCGGAGTAGGGCTGGAAAATGGCAAGGGGCACCGAGGCCTCTGCGGGGAGCTGTGTGGCGGCCTGGGCGGCTGCTCCCCTTGTAACAGACTCCACCGACAGGAGGCG
i ponAbe2.chr15_random          M 606 C 0
s nomLeu3.chr6                   25570669 104 - 121039945 ----------GAGCGCGGCTGGAAAATGGCGAGGGGCGCGGAAGCCTCGGCGGGTAGCTGTGTGGCGGCCTGGGTGGCTGCTCCCTTTGTAACCGACTCCAGCGGCAGGAGGCG
i nomLeu3.chr6                  C 0 I 22002
s chlSab2.chr29                  20392169 114 -  24206276 ACTGCAGTCGGAGCACGGCTGGAAAATGGTAAGGGGCACAGAGGTCTCTGCGGGGAGCTGTGTGGCGGCCTGGGCGGCTGCTCCCCTTGTAACAGACTCCACCGACAGGAAGCG
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e macFas5.chr7                   65372747   0 + 171882078 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=12433.000000
s hg38.chr15_KI270850v1_alt        122719 49 +    430880 CTGCTCCTGTCAAGCCGCAGCTTAAAAGGGCAACAGCACCACAGTCCCC
s ponAbe2.chr15_random            9406675 49 +  10928107 CTGCTCCTGTCAAGCCGCAGCTTAAAAGGGCAACAGCACAGCCGTCCCC
i ponAbe2.chr15_random          C 0 C 0
s chlSab2.chr29                  20392283 49 -  24206276 CGGCTCCTGTCAAGCCGCAGCTTAAAAGGGCAACAGCACCACCGCCCCC
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642  0 - 162156779 I
e macFas5.chr7                   65372747  0 + 171882078 I
e nomLeu3.chr6                   25570773 22002 - 121039945 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=88395.000000
s hg38.chr15_KI270850v1_alt        122768 274 +    430880 GCTACCGCCTGGGAAAGGGCTGCCCCTACCCCGCTCCCGTCCCTCTCGCCCCTCACACCCGTCGCCCCTCACCCCTCAACCCGCGCGCCCCCTGCGCACCCGTTTCGGCGGCTGCAG-GAGTCCAGAGCATGCGCGCGCTTCCGGCTGCCCCCTCCTCGCCTTGACCCAGCACTGCTGGACCCATCTGGTCCGTTCTTCACACTCGCGGACTGGAGGCTCCGGGCAGCACAACCACCAACTC------GTGTGTGTGTTGGG-GTG-GGGGTGGGGGGCAGAA
s ponAbe2.chr15_random            9406724 241 +  10928107 TCTATCGCCTGGGAAAGGGCTGCCCTTACCCCGCTCCCGTCCCTCTCGcccctcac---------ccctcacccctcaccccA-----------------------AACGGGTGCGC-GAGTCCAGAGCATGCGCGCGCTTCCGGCTGCCCCGTCCTCGCCTT-ACCCAGCACTGTTGGACCCATCTAGTCCGTTCTTCACACTCGCGGACTGGAGGCTCCGGGCAGCACAACCACCAACTC------GTGTGTGTGTTGGG-GTG-GGGGTGGGGGGCAGAA
i ponAbe2.chr15_random          C 0 C 0
s macFas5.chr7                  106527963 253 - 171882078 gttaccgcctgGGAAA-GGCTGTCACCATCCCG-CCCTGTCCCTCTCACCCCTCAC---------CCCTCAT------CCCTGCGCGCCCCGTGCACACCCATTTCGGCTGGTGCAACGAGACCAGAGCATGTGCGCGCTTCCGGCTGCCCCCTCCTCGCCTTGACCCAGCACTGCTGGACCCATGTGGTCCGTTCCT--CACTCACGGACTGGAGGCTCTGGGCAGCACAACCAGAAACTC------CGGTGTGTGTTAAG-----GGGGGGCAGGGCACAA
i macFas5.chr7                  I 18636 C 0
s chlSab2.chr29                  20392332 261 -  24206276 TCTACCGCCTGGGAAAGGGCTGCCCCCACCTTACCCCCTTCCCTCTCACTCCTTAT---------C------------CCCCGCGCTCCCAGTGCCCACCCATTTCCGCAAGTGCAA-GAGTCCGGAGCATGAGTGCGCTTCTGGATGCCCCCTCCTAGCCTTGACTCAGCACTGCTGGACCCATCTGGTCCGTTCCTGGCACTGGCGGACTGGAGGCTCCGGGCAGCACAACCACCAACTCGTGTGTTCGTGTGTGTTGGGGGTGCGGGGTGGGGGGCACAA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642   0 - 162156779 I
e nomLeu3.chr6                   25570773 22002 - 121039945 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=889227.000000
s hg38.chr15_KI270850v1_alt        123042 1225 +    430880 AACCACCAACTC---gtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtgtg------------tgtgtgtCTCCCAAGGGAAC--AGCACTGCTGAGTTCAGGC----TATCAGCTCATGGAC------------------------------TGTCAGCAAAATACAGTCACAAGAAGGCTATGTGCTGTTTTGTCTCTTGCAGTGACGTCATGTT-----------------GCTCATGTTTTATGTTTTTCAGAGTTCATTAGTTTCTGTTTGCTCTCAGTTAATATCCAGCTCAATAGATTGTGTAAGTAGAATACCCCCAAACTGAAAGTCACCTACATAAAATATAGTGAAAAATATGTCACCCACTTAAACTATAGTTGAAAATATGTACTCATTAGTTTTGTGTAGCCAACACTGGataatgggtaaggggaaaggatcccagggctagactgcctgggttcaagttccgattt-----cctgctggctgtgaaatacttgacagcgttcagcctctgtttcttttctt-ttttttttt-----------------------------------------------------------------tttttttAGCTTAATCCCAAATATGATAGTAAGTCTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATGACAGTCTATGTGAAAACTTTAAAGTTTTCAAAGCCACTATCTAGCTTAGGAAAGTCCTCAGCTTTAGGGGTTAAAGT-------------------TTTTAAAACCACTGCCTGGTTCAGGAAAGCCCTCAGCTGTAGCCATTATTAGCTATGATTATTATTGTGGTGGCTACACATACATTAATGAGGCAGGAAAATGCTCAAGGATAACAAGCAAGTATCCAGATTATCTCATCAGACCAAGACAGATGCATATGCATGCATGATCATGTTTTAGCTCAGAGCCATTTGTCTAAAAGGCTCTTGAACTCAGAGGCCCAGG-AGTATCAACTTTGCTTTGCAGTGGAGCCATCGCTTTTGTTAATCAATGAAATTGACATAATGCTC----TTCT-TTTTTTTTTCCTTTTTAGCACCAACCATGTGCCTAGAGCTAAGTGTGTTAAGAAGAGCATGCTTCAAGTGGCTGGAGTGAGCAATTCAACTTGTGGAGGAATGAGAAGTGACAGTGTTGAGACAAGCAACATAAAACCCCAGGGTAAGGTAGAAATCACTGAAAGTCAGGCAAAGGAACTGGCGTCCAGTAATGAGTCAGGCTTTGCCAGCCTCTGGCCCTACAGATGGCTCTTTGCAGAGGAAAAAATTAAGCCAGGCCCGAGGGCACAGATCCTAAGGGAATGCTGGCAGCTCTAGGCTGTCT
s ponAbe2.chr15_random            9406965 1234 +  10928107 AACCACCAACTC---GTGtgtgtgtgtgtgtgtctgtc----------------tgtctgtctgt------------------------ctCCCAAGGGAAC--AGCACTGCTGAGTTCAGGC----TATTAGCTCATGGAC------------------------------TGTCAGCAAAATACAGCCACAAGAAGGCTATGTGCTGTTTTGTCTTTTGCAGTGACATCATGTT-----------------GCTCATGTTTTATGTTTTTCAGAGTTCATTAGTTTCTGTTTGTTCTCAGTTAATATCCAGCTCAATAGATTGTGTAAGTAGAATACCCCCAAACTGAAAGTCACCCACATAAAATAGAGCAAAAAATATGTCACCCACTTAAACTATAGTTGAAAATATGTACTCATTAGTTTTGTGTAGCCAACACTGGataatgggtaagggcacaggatcccagggctagactgcctgggttcaagttctgacttagccacttgctgactgtgaaatacttgacagctttaagcctcagtttctt---TT-TTTCTTTTT-----------------------------------------------------------------TTTTTTTAACTTAATCCCAAATGTGATAGTAAGTCTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATGAGAGTCCATGTGAAAACTTTAAAGTTTT-AAAGCCACTATCTGGCTCAGGAAAGTCCTCAGCTTTAGCTGTTAAAGTTTTAAAAGCCACTTTAAAGTTTTAAAGCCACTGCCTGGCTCAGGAAAGCCCTCAGCTTTAGCCATTATTAGCTATGATTATTATTGTGCTGGCTACACATGCATTAATGAGGCAGGAAAATGCTCAAGGATAACAACCAAGTATCCAGATTATCTCATCAGACCCAGACAGATGCATATGTGTGCATGATCATGTTTTAGCTCAGAGCCATTTGTCTAAAAGGCTCTTGAACTCAGAGGCCCAAG-AGTATCAACTTTACTTTGCAGTGGAGCCATCACTTTTGTTAATCAATGAAAATGATATAATGCTC----TTTTATTTTTTTTTTCTTTTTAGCACCAACCATTTGCCTAAAGCTAACTGTGTCAAGAAGAGCATGCCTCAAGGGGCTGGAGTGAGCAATTCAACTTGTGGAGGAATGAGAAATGATAGTGTTGAGACAAGCAACGTAAAACCCCAGGGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCGTCCAGTAATGAGTCAGGCTTTGCCGGCCTCTGGCCCTACAGATGGCTCTTTGGAGAGGAAAAAATTAAACCAGGCCTGAGGCCACAGATCCTAAGCGACTGCTGGCAGCTCTAGGCTGTCT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                   25592775 1231 - 121039945 AGCCACCAACTTGGGgtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgt------------------gtgtgtCTCCCAAGGGAACAGAGCATTGCTGAGTTCAGGCTGATTATTAGCTCGTGGAC------------------------------TGTCAGCAAAATACATTCACAAGAAGGCTATGTGCTGATTTGTCTTTTGCAGTGACGTCATGTT-----------------GCTCATGTTTTATGTTTTTCAGAGTTCATTAGTTTCTATTTGTTCTCAGTTAATATCCAGCTCAATAGATTGTGTAAGTGGAATACCCCCAAACTGAAATTCACCCACTTAAAATAAAGTGAAAAATATGTCACCCA-TTAAACTATAGTTGAAAATAGGTACCCATTAGTTCTGTGTAGCAAACACTGGataatgggtaagggcacaggatcccagggctagactgcctgggttcgagttctgacttagccacttgctggctgtgaaatacttgatagctttaggcctcggttttttTTGTT-TTTTGTTTTTGTTTTCTCTCtctttctttctttcttctttctttctttctttcttttttcCTTCCTTCCTTCCCTTTTTTTTTCTTAATCCCAAAGGTGATAGtaagcctcagtttcttgatctgaaaaatagaaattatTCAATGAGAGTCTATGTGAAAACTTTAAAGC----A---------------------------------------------------------------------------CATTGCCTGGCTCAGGAAAGTCCTCAGCTTTAGCCATTATTAGCTATGATTACTATTGTGCTGGCTACATGTGCATTAATGAGGCAGGAAAATGCTCAAGGATAACAACCAAGTATTCAAACTATCTCATCAGACCGACAGAGATGCATGTGTGTGCATGCTCATGTTTCAGCTCAGAGCCCTTTGTCTAGAAGGCTCTTGAACTCAGAGGCCCAGGCAGTATCAACTTTACTTTGCAGTGGAGCCATCACTTTTGTTGATCAATGAAATTGACATACTGCtt----tttt-ttttttttttt-------CACCAACCATGTGCCTAGAGCTATCTGTGTCAAGAAGAACATGCTTCAGTTGGCTGGAGTGAGCAATTCAACTTGTGGAGGAATGAGAATTGACAGTGTTGAGATGAGAAACATAAAACCCCAGAGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCGTCCAGTAATGAGTTAGGCTTTGCCAGTCTCTGGCCCTACAGATGGCTCTTTGGAGAGGAAAAAATTAAGCTAGGCCTAAGGCCACAGATCCTAAGGGACTGCCGGCAGCTCGAGGCTGTCT
i nomLeu3.chr6                  I 22002 C 0
s macFas5.chr7                  106528216 1243 - 171882078 AACCACCAAC-t---gtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtgtgtgtCTGTCTGTCTGTCTGTCTCCCAAGGGAAC--AGCAGTGCTGAGTTCAGCTTGAGTATTAACTCATGGAC------------------------------TGTCAGCAAAATACAGTCACCAAAAGACTATGGGCTGTTTTGTCTTTTGCAGTGACATCATGTT-----------------GCTCACCTTTTATGTTTTTCAGAGTTCATTAGTTTCTGTTTGTTCTCAGTTAATATCCAGCTCAATAGATTGTGTAAGTAGAATACTCCCAAACTGAAAGTCACCTACATAAAATATAGTGAAAAATATGTCACCCACTTAAAGTATAGTTGAAAACATGTACTCATTAGTTTTGTGTAGCCAACACTGGatactgggtaagggcacaggatcccagggctagacttcctgggttcaagttctgatttagccacttgctggctttgaaatgcttgacaactttaagcctcaat-----------ttgttaatt-----------------------------------------------------------------ttttTTTAACTTAATCCCAAATGTGATAGTAAGTCTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATGAGAGTCTATGTAAAAACTTT--AGTTTTTACAGCCACTATCTGGCTCAGGAAAGTCCTCAGCTTTAGGGGTTAAAGTTTTAAAGGCCACTTTAAAGTGTTTCAGCCACTGCCTGGCTCAGGAAAGCCCTCAGCTTTAGCCATTATTAGCAC--ATTATTGTTGTGCTGGCTACACATGCATTAATGAGGCAGGAAAATGCTCAAGGATAACAACTAAGCATCCAGATTATCTCATCAGACCGAGACAGATACATATACATGCATGCTCATGTTTTAGCTCAGAGCCATTTGTCTAAAAGGCTGTTGAACTCAGAGGCCCAGGCAGTATCTACTTTACTTTGTAGTGGAACCATCAGTTTTGTTAATCAATGAAATTGACATAACGCTC------------TTTTTTTCTTTTAAGCACCAACCATGTGCCTAGAGTTAACTGTGTCAAGAAGAGCATGCTTCAGGTGGCTGGAGTGAGCAGTTCAACTTGTGGAGGAATGAGAAATGATAGTGTTGAGACAAGAAACACAAAA-CCCAGGGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCATCCAGAAATGAGTCAGGCTTTGCCAACCTCTGGCCCTACACGTGGCCCTTTGGAGAGGAAAAAATTAAGTCAGACCCGAGGGCGCAGATTGTAAGGAAATGCCGGCAGCTCTGGGCTGTCT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  20392593 1299 -  24206276 AACCACTAACgt---gtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTGTCTCCCAAGGGAAC--AGCACTGCTGAGTTCAGGCTAAGTATTACCTCATGGACTGTAAGCAAAATACACTCGCAAGAAGGCTATGTAAGCAAAATACACTCGCAAGAAGGCTATGTGCTGTTTTGTCTTTTGCAGTGACATCATGTTTGCAGTGACATCATGTCGCTCATGTTTTATGTTTTTCAGAGTTCATTAGTTTCTGTTTGTTCTCAGTTAATATCCAGCTCAATAGATTGTGTAAGTAGAATACTCCCAAACTGGAAGTCACCTACATAAAATATAGTGAAAAATATGTCACGCACTTAAACTATAGTTGAAAACATGTACTCATTAGTTTTGTGTACCCGACACTGGATactgggtaagggcacgggatcccagggctagactgcctgggttcaagttccgattgagccacttgctggctttgaaatacttgacagctttaagcctcagtttctttcTTtcttttttttt-----------------------------------------------------------------tttttttaaCTTAATCCCAAATGTGATAGTAAGTCTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATGAGAGTCTATGTGAAA----------------AGCTACTATCTGGCTCAGGAAAGTCCTCAGCTTTAGCTGTTAAAGTTTTTAA-------------------AGTCACTGCCTGGCTCAGGAAAGCCCTCAGCTTTAGCCCTTATTAGCTATGATTATTATTGTGCTGGCTACACATATATTAATGAGGCAGGAAAATGCTCAAGGATAACAACCAAGTGTCCAGATTATTTCATCAGATGGAGACAGATACATATGTGTGTATGCTCATGTTTTAGCTCAGAGCCATTTGTCTAAAACGCTTTTGAACTCAGAGGCCCAGGCAGTATCAACTTTACTTTGCAGTGGAGCCATCACTTTTGTTAATCAATGAAATTGACATAATGCTCTTtttttt-ttttttttttctttttagCACCAACCATGTGCCTAGAGCTAACTGTGTCAAGAAGGGCACACTTCAATTGGCTGGAGTGAGCAATTCAACTTGTGGAGGAATGAGAAATGATAGTGTTGAGACAAGAAACATAAAACCCCAGGGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCATCCAGTGATGAGTCAGGCTTTGCCCGTCTCTGGCCCTACAGATGGCTCTTTGGAAAGGAAAAAATTAAGCCAGGCCCGAGGGCACAGATCCTAAGGGACTGCTAgcagctctaggctgtct
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642    0 - 162156779 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=2550.000000
s hg38.chr15_KI270850v1_alt        124267 3 +    430880 ATG
s ponAbe2.chr15_random            9408199 3 +  10928107 ATG
i ponAbe2.chr15_random          C 0 n 0
s nomLeu3.chr6                   25594006 3 - 121039945 ATG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106529459 3 - 171882078 GTG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  20393892 3 -  24206276 atg
i chlSab2.chr29                 C 0 T 85275
s canFam3.chr9                    5818449 3 -  61074082 att
i canFam3.chr9                  N 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102469642 0 - 162156779 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=1420.000000
s hg38.chr15_KI270850v1_alt        124270 4 +    430880 AGAG
s nomLeu3.chr6                   25594009 4 - 121039945 GAAG
i nomLeu3.chr6                  C 0 I 45855
s macFas5.chr7                  106529462 4 - 171882078 Agag
i macFas5.chr7                  C 0 C 0
s canFam3.chr9                    5818452 4 -  61074082 ggag
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                  20393895 85275 -  24206276 T
e papAnu2.chr7                  102469642 0 - 162156779 I
e ponAbe2.chr15_random            9408202 0 +  10928107 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=236446.000000
s hg38.chr15_KI270850v1_alt        124274 1298 +    430880 TCCAGAGATGCTGCTTCACCCtggggctttaggcaagtccctttccctcccagagcctcagcatcccttctagcaaatgacg-------ttctgcctttctcctaggatggctgtggggatcaagggagacagtggccatagggata---------ctatgtt----------------aactgcagaTGCGGCTGTAGGAGCACTTTGCTAACTTCCAGCGTGAGTTCAGACTCTTCAGGCTATTTGGCACCCAGATCTATGGTGAGGTGTGACATATGGGA--TGTAAAGTTTGATGCCTGCTCCGACTCCAGTCTTGCTAACACACACGAAACCTTTGGTAAATCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCTGGGGCATGACTGAGGT-AGGCATACATGGTGAGGAACTGGAGGGTAACTGGGTAAAGAGCTGCAGTGTGGGCAGAGGTGTAGTGTGGGTCACATCGCGGATAGCCACTGGCCAAAGCAGGGAACAGAGACAGAATGAGGAAGAG-----------CTCTGTGGGGAGGGTGGGGCACAGGGTGGAGAACCTTCAAAGTCCAAAGAGTATGACTTGTTGGGATTCAACGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTGAGGTGGAGAAATGACAGCCGGACATTA-GTGAGCAAGCCCTGTCTCC--GTGAGCAGCATGGGTGGTCCTCTGAGCACGCCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTGCGGGTGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCACGCCCCAGATCCATGTGGCACGTGCCGGCCGGTGAGGGTGCTGGGCATTGGGAGGTGGCGGGGAGGGCGACGTATGCGTGTTGTTTGTGGGCATGTGTGTTAGCGTGTGCATGT-GGGCCGTGGGGCCTCACAGCATGTGTGTGCACACTCCGGCATGTGCGTGTGTGTGTCCCCCA-CCCCCAGGCCTGCCCCACCCATGCATGTGACCTGCCATG-TGATTTGAAGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCGTCAGCCATGGTAGG----TACATGCCTCACTGCCTGCTGCATGAATGGTCTGCCTGCC------------CCGCTGCCCCAGCTCCACAC-AGGGGGCATACCTGGAGCCTCAGAGCCAGGCTCCCTGCCC-CTCCCTTCTGGAGCTGCAGACTTGCTCTTTCCTCTTTCTGTCCTTG-TGCT-GCTGGCTGTCTCACTTTGCTCCCTGTGAGCCACGGGACTCACTGCCACTGCTCAAG
s macFas5.chr7                  106529466 1282 - 171882078 tccagatttgctgcttcatcctggggctttaggcaagtcccttttcctcccagagcttcagtatcccttctatcaaatgatg----atgttctgcctttctcctaggatggctgtggagatcccgggaggcagtggccatagggatg---------ctatgtt----------------aactgcagaTGCAGCCATAGGAGCCCTTTGCTAACTGCCAACGTGAGTTCAGACTCTTCAAGCTATTTGGCACCCaggtgtgtggtgaggtgtgacatgtggga--tgtaaggtttgaTGCCTGCTCCGACTCCAGTCTTGCTAACACACGCTAAACATTTGACAAATCCTGACCTTACCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGGCTGGCTTCAATGCAGTCCGGGGCATGACTGAGAT-AGGCTTATGTGGTGAGGAATTGGAGGATAACTGGGTAAAAAGCTGC--CATGGGCAGAGGTGTAGTGTGGGTCGCATCGAGGATAGCCCCTGGCCAAAGCAGGGAACACAGACAGAATGAGGAAGAG-----------CTCTGTGGGGAAGGTGGGGCGTAGGGTGGAGAACCTTCAAAGTCTGAAGAGTGTGACTTGTTGGGGTTCAGTGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGGAGAAATGACAGCTGGACATTG-GTGAGCAAGCCCTGTCTCC--ATGAGCAGCGTGGGTGGTCCTCTGAGCACACCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTGCGGGCGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCATGTCCCAGATCCTTGTGGCACAGGCCGGCCAATGAGGGTGCTGGGC-------------GGGGAAGGCAGCGTATGCGTGTTTTTTGTGGGCATGTGTGTTAGTGTGTGCATGC-AGGCAGTGGGGCCTCACAGCATGTGTGTGCACACTCCGGCGTGTGCGTGTGTGT--CCCCCA-CCCTCAGGC-TGCCCCACC-ATGCATGTGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCGGTGTTCCCTGAGGAGCGTCAGCCTTGGTAGG----TACATGCTTTGCTGCCTGCTGCATGAAAGGTCTGCCTGCC------------CCGCTGCCCCAGCCCCACAT-GGGGGGCCTACCTGGGACCTCAGAGCCAGGCTCCCTGCCC-CTCCCTTCTGGAGCTGCAGACTTGCTCTTTGCTCTTTCTGTCTTTG-TGCT-GCTGGCTGTCTCACTTCTCTCCCTGCGAGCCATGGGACTCAGTGTCACTGCTCCAG
i macFas5.chr7                  C 0 C 0
s canFam3.chr9                    5818456 1328 -  61074082 tccagatgttctggttcaccct-gggctttcggcaagtcactttctcttccagggccttagtttcccttctaccacatgatatttaacattctgcctttctcccagggttggtgtgaggatcaagggagacagtgactgtagaaCTGTCTGCAGTTCTACAGTTCAGACTGTAGCCACAAACTGCAGATGTGGCTATAGGAGCACTTTGCTAACTTCTCTTGTGAGTCGAGATTCTTAAGGGTATTTGACA----------TGCCCAGGTGTGACATATGGGAAGAGGAAGATTTGGCACCTGCTCTAACTCCAGTCTCACTAACATACAGGAAATGCTTGGCAAGTCATCGCCTTGCCTCGGGGAAGAGAACAGTCTGGGA----TGCTTCAAGACAGATTGACCTAGGGGAGGTCTGGGGGCTGATTGAGATAAGACTCAGGTGATGAGGAGTCAGGGGCG---TCGGTATGGAGCAGCAATGAAGGCAAAGGTTTAGCTTGGGATGCATTGAGGAGAGCCACTGGCCAGAGAAGAGTGC--AGATAGAATGAGGAAGAATAAGAAAAGGTTGCCGTGGGTACAGTGGGG-GCAGGCTGCAGAACCTTAAAAATTC---------------TTGGGACTCAATGCTATGGGGACTAGGGAGCCATGGAAGGTTCTCGGGCAGAGAAATGACAGCTGGACCCTGAGAAAGCAAGTCCTGTCCCTTATGGAGCATTGCAGGTGGCCCTCTGAGCACTCCAGGCACGAATGTGCAGGGAGCTGGTGCAAATGCCTCCTGTGTATGGGCGAGCTTCTGTGTCGTGACTCAGCCCACGCGTGTGCTTCAATGTGCCGAGTGGCTGCATGCCCC-GATCCGTGCTGCACGTGCCAGCCAGTGAGGGTGCTGGGCAGCGGGA------GGTGGGGGAGGTGTATGCGTGTTGTCTGTGGGCATGTGTGTCAGTGTGTGCATGCGGGGCCGTGGGGCCTCCCAGCATGTGTGTGCACGCCCGGGCGTGTGCGTGTGCGTGACCCCCACCCCCCAGGCCTGCCCTGTCTGTGCGTGTGAACTGCCATGTTGATCTCGTGCTGTCTTTCAGAATCACTATCAGTGACCCCTGAGGAGCGTCAGCCACGGTAGGTGCATACATGCCTCTCTGCCTGCTGCATGAACAGTGTGTCTGCCCCCCGCCCCCCGCCGCTGCACCAGCTCCACACTGGGGGGCGCACCTGGGACCTCAGAGCCAGGCTCCCCTCCCTCTCCCTTCTGCAGCTCCAGACTTATTCTTTCCTCTTTCTGTCCTCGCTGCCAGCTGGCTCTCTCACCTCCCTCTCAGCGAGCCTCGGGACTCAGTGCCACTGCTCAAG
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                  20393895 85275 -  24206276 T
e papAnu2.chr7                  102469642    0 - 162156779 I
e nomLeu3.chr6                   25594013 45855 - 121039945 I
e ponAbe2.chr15_random            9408202    0 +  10928107 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=663.000000
s hg38.chr15_KI270850v1_alt        125572 2 +    430880 GT
s nomLeu3.chr6                   25639868 2 - 121039945 GC
i nomLeu3.chr6                  I 45855 C 0
s macFas5.chr7                  106530748 2 - 171882078 GT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109012304 2 - 162156779 GC
i papAnu2.chr7                  n 0 C 0
s canFam3.chr9                    5819784 2 -  61074082 AT
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                  20393895 85275 -  24206276 T
e ponAbe2.chr15_random            9408202 0 +  10928107 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=61807.000000
s hg38.chr15_KI270850v1_alt        125574 60 +    430880 CTCCATGGCTGAGCCTGGGG-GCTCTTACAACAGGCTCCATGCCCAAGGTGGCAGATG-----------TGG
s nomLeu3.chr6                   25639870 60 - 121039945 CTCCGTGGCGGAGCCTGTGG-GCTCTTGGAACAGGCTCCGTGCCCAAGCAGGCAGACA-----------TGG
i nomLeu3.chr6                  C 0 I 10
s macFas5.chr7                  106530750 60 - 171882078 CTCCATGGCTGAGCCTGGGG-GCTCTTAGAACAGGCTCCATGCCCAAGCTGGCAGATG-----------TGG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109012306 71 - 162156779 CTCCATGGCTGAGCCTGTGG-GCTCTTGGAACAGGCTCCATTCCCAAGCTGGCAGGTGTGGGTGTTCTTTGG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3116906 60 +  24206276 CTCCCTGACTGAGCCTGGGG-GCTCTTGGAATGGGCTCCATGCCCAGGCTGGCAGACG-----------TGG
i chlSab2.chr29                 n 85275 I 47
s canFam3.chr9                    5819786 72 -  61074082 CTCCATGGCTGAGCCTGGGGAGCTCTTGGGACAGGCTCCGCGCCCGAGCTGGCAGACACAGGTGCTCTCTGG
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e ponAbe2.chr15_random            9408202  0 +  10928107 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=36089.000000
s hg38.chr15_KI270850v1_alt        125634 45 +    430880 AACCATCAGAGAGGGCACAGAGCTCATGGTTTATGGTGTAGGGGC
s nomLeu3.chr6                   25639940 45 - 121039945 AGTCATCACAGAGGGCAGAGAGCTCGTGGTTTATGGTGTAGGGGC
i nomLeu3.chr6                  I 10 C 0
s macFas5.chr7                  106530810 45 - 171882078 AGCCATCAGAGAGGACACAGAGCTCGTGGTTTATGGTGTAGGGGC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109012377 45 - 162156779 AGTCATTAGAGAGGGCAGAGAGCTCATGGTTTATGGTGCAGGGGC
i papAnu2.chr7                  C 0 C 0
s canFam3.chr9                    5819858 45 -  61074082 AGCCATCAGAGAGGACAGAGGGCTCATGGTTTATGGTGTAGAGGC
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                   3116966 47 +  24206276 I
e ponAbe2.chr15_random            9408202  0 +  10928107 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=52848.000000
s hg38.chr15_KI270850v1_alt        125679 57 +    430880 TGGGAGCTTGGAGGGGGTTGTGTGGGGGGCTGGACTC--AGGCGGCCAGAGGCCTGGGC
s nomLeu3.chr6                   25639985 59 - 121039945 TGGGAACTTGGAGGGCATTGTGTGTGGGGCTCGACTCTGAGGCGGCCAGAGGCCTAGGA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106530855 59 - 171882078 TGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGAATCTGAGGCGGTCAGAGGTCTAGGC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109012422 59 - 162156779 TGGGAACTTGGAGGGGGCTGTATGTGGGGCTGGATACTGAGGTGGTCAGAGGCCTAGGA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3117013 59 +  24206276 TGGGAGCTTGGAGGGGGTCGTGTGTGGGGCTGGATTCTGAGGCGGCCAGAGGTCTAGGA
i chlSab2.chr29                 I 47 C 0
s canFam3.chr9                    5819903 54 -  61074082 AGGAACCTTGGAGGGGGTTGTGCGTGGGGCTGAACTC--AGCCAGCC--AGGCTTGGA-
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e ponAbe2.chr15_random            9408202  0 +  10928107 I
e panTro4.chr15_GL392289_random    187897 65427 -    187897 T

a score=498692.000000
s hg38.chr15_KI270850v1_alt        125736 386 +    430880 ACATCATCCT-GGGCACGCCGTACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGTGCCAAGAGCCAAATCCACTGCAGATTAGGGGTGATAGTCACGGTCCCACGTCCTCTAT-CTGTCAGCAATCCAGTGGTGATCTAGGA------------------------TAAAAGCCTGAGAGTCCTATACACGCGGTCATCCCACAACACACTTCATA-------GGCCATGGAAGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATGATAGCTGCTAGCGTGCGACTGAAGGCAGGGTCCCTGGCCCCTGCTGAAGCACTAC-TGCTGGCCAGCAGGCTCACGCACCTTGGCCTGTTGCTTCTAGGGGTCGCCTGTGCTATTCAGCCAA
s panTro4.chr15_GL392289_random    122470 383 -    187897 ACATTATCCT-GGGCATGCCGTACCTGTCGTGCAGTCTGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGTGCTGAGAGCCAAATCCACTGCAAAGCAGGGGTGATAGTCAGGGTCCCACCTCATCTAT-CTGTCGGCAATCCAGTGGT-ATCTAGG---------------------------------TGAGAGTCCCATACACACGGTCATCCCACAACACACTCCACACTCCACAGGCCAGGTGGGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCACCATAGCTGCTAGTGTGTGACCGAAGGCAGGGTCCCTGGCCCCCGCTGAAGCACTAT-CGCCGACCAGCAGGCTCACACACCTTGGCCTGTTGCTCCTAGGGGTCGCCTGTGCTATTCAGCCAA
i panTro4.chr15_GL392289_random T 65427 I 8
s nomLeu3.chr6                   25640044 387 - 121039945 ATGTCATCCT-GGGCACAACATAACTGTTGTGCAGGCTGAGTCATGCTGCCAGGGCAGGGTATCCAGTTCCCAGCCTGGGAGTGCCGAGAGCCAAATCCACTGCAAAGCGGGGGTGATAGTCAGGGTCCCACCTCTTCTAT-CTGTTGGCAATCCAGTGGTGATCTAGGA------------------------TAAAATCTTGAGAGTCCCATACACATGGTCATCCCACAACACACCTCACA-------GGCCAGGCAGGAACACACATCCCCCTTCCCTCCCTCCCAGGTACCACCATAGCTGCTGGTGTGTGACTGAAGGCAGGGTCCCTGGCCCTTGCTGAAACACTAC-CGCCAGCCAGCGGGCTCATGCACCTTGGCCTGTTGCTCCTAGGGGTCACCTGGGCTATTCAGCCAA
i nomLeu3.chr6                  C 0 I 8
s macFas5.chr7                  106530914 385 - 171882078 ACATCATCCT-GGGCACGCTGTACCTGTCATGCAGTCTGGGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGGCTGGGAGTGCTGAGAGCCAAATCCACTGCAGATTAAGGATGATAGTTAGGGTCCCACATCCTCCAA-CTGTCAGCAATCCAGTGGTGATCGAGGA------------------------TAAAAGCCTGAGAGTCCCATACACACGGTCATCCCACAACACACTTCACA-------GACCGGGCAAGGACACACAGCCCCGTTCCCTCCCTCCCAGGTACCATCATAGCTGCTCGTGTG-GACTGAAGACAGGGTCCCTGGCCCCCGCTGAAGCACTAC-CGCCGACCAGCAGGCTCACTCACCTTGGCCTGTTGCTCCTAGGGGTCTCCTGTGCTATTCATCCAA
i macFas5.chr7                  C 0 I 8
s papAnu2.chr7                  109012481 387 - 162156779 ACATCATCCT-GGGCATGCTATACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCAGGGCAtccagctcccagcctgggagTGCCGAGAGCCGAATCCACTGCAGAGCAGCGGTGATAGTCAGGGTCCTACCTCCTCTAT-CTGTCGGCAATCCACTGGTGATCTGGGA------------------------TAAAATCTTGAGAGTCCCATACACGTGGTCATCACACAACACACCTCACA-------GGCCAGGCAGGGACACACAGGCCCCGTCCCTTCCTCCCAGGTACCATCATAGCTGCTAGCATGTGACTGAGGGCAGGGTCCCTGGCCCCCGCTGAAGCACTAT-CGCTGGACAGTGGGCTCAGGCACTttggcctgttgctcctagggGTCAACTGTGCCATTCAGCCAA
i papAnu2.chr7                  C 0 I 8
s chlSab2.chr29                   3117072 386 +  24206276 ACATCATCCT-GGGCATGCCGTACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCAGAGTATCCAGCTCCCAGCCTGCGAGTGCCGAGAGCCAAATCCACTGCAGAGCGGTGGTGATAGTCGGGGTCCCACCTCCTCTAT-TTGTT-GCAATCCAGTGGTGATCTAGGA------------------------TAAAACCTTGAGACTCCCATGCACACGGTCATCCCACAACACACTTCACA-------GGCCAGGCAGGGACACAAAGCCCCCTTCCCTCCCTCCCAGGTACTATCATAGCTGCTAGTGTGTGACCGAAAGCAGGGTCCCTGGCCCCTGCTGAAGCACTAC-TGCCAGCCAGCGGGCTCACACACTTTGGCCTGTTGCTTCTAGGGGTCACCTGTGCTATTCAGCCAA
i chlSab2.chr29                 C 0 I 15
s canFam3.chr9                    5819957 391 -  61074082 ACTTTGTCCTGGGGGGTGCCACACTCATTGTCCAACCTGAGCCAAGCTGTCGGGGCAGGGCAGCCAGCTCCCAGCTCAGGAGCGCTGGGAACCGAGGCCATGATAGGGCAGAGGAG---GTCACAGCCCCACCTCCTCTATGGTGCCAGCAGTTGAGCAGCAATTTGGGGCGAAGGCTCTGGTTTGCTGATTTCTGAAAGCTGGAGGGCCCTGTCCACAGTGT------------------ACG-------GGCGAGGTAGGATCACGCAGCCTGTTCCTCTCCCTCCT-GGTATGGTCATGCTTGTGATGGCACTACAAACGACAGTGTCCTCTGCCCCAGATGAAGCACCGTAAGCCAGCCCTCAGGCTCCCGGGCCTAGGCCTGGTGCTCCT-GGGGTGACCTACACTTTTCAGCCAA
i canFam3.chr9                  C 0 I 8
e calJac3.chr10                 113866255 79192 - 132174527 I
e ponAbe2.chr15_random            9408202   0 +  10928107 I

a score=4145.000000
s hg38.chr15_KI270850v1_alt        126122 6 +    430880 TAGTGC-
s panTro4.chr15_GL392289_random    122861 6 -    187897 CAGTGC-
i panTro4.chr15_GL392289_random I 8 I 1
s nomLeu3.chr6                   25640439 6 - 121039945 CAGTCC-
i nomLeu3.chr6                  I 8 I 1
s macFas5.chr7                  106531307 6 - 171882078 CAGTGC-
i macFas5.chr7                  I 8 I 1
s papAnu2.chr7                  109012876 6 - 162156779 CAGTGC-
i papAnu2.chr7                  I 8 I 1
s canFam3.chr9                    5820356 7 -  61074082 CAGTGTC
i canFam3.chr9                  I 8 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                   3117458 15 +  24206276 I
e ponAbe2.chr15_random            9408202 0 +  10928107 I

a score=819370.000000
s hg38.chr15_KI270850v1_alt        126128 668 +    430880 ------------------------------TGCTGGCCCAGCTGAGC------TCCACCTAGAGAGCTCACTTCCCTTT-----CCTGCCGCGGAGTCTCCCTCTTCTGCTTTT-CCCAGCAGGAAGGGCCCAGCCTCACCTATGTAACCTGCAGCCCC----CCGCCAACCAGTTGAGGCTGCCCTGTTAGACTTAGAAGTCTATGGCCAATGGCATCTGGC-TACCTGCCCTCCCTGCCTTCCCCAGGGTCCCT-CAGAGGACCCTGGGCTTTCTGATGGCCCAGAGGGGCCTCT-GGCATTCACTCCAGCCAGCCATCCCTTAT-AGCTCCACCATTTT-GGTTCAATCAGTGTTCCT-----------TCTCTATCAGGTCTGGTGGCTGTTGGATGGGGCTCT------------CCAA-GCAAGAGGTGGCCCTGGGCC-GTGAGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCGAGGGGGCTGAGCATTCATCT-GAACTATGGGTGGACTGCCTGGGTGCCATGAAAGAGGCCAGCGTGTGTGGGGTGGGGAGGGCCGCCGCAGTCCCCAGGCACTACCTAT-GAAGCTCCGGCTTCTCCCTCCATC---TTCCTCC--CCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACCTTGC--CATGCCCACACCTACGCCCTCCCCTCCCCGGCCCTC-CACAGCTGCTGCAGCGCACCCATACTCTGCACTTGCCTCACCAGC
s panTro4.chr15_GL392289_random    122868 674 -    187897 ------------------------------TGCTGGCCCAGCTGAGC------TCCGCCTAGCGAGCCCACCTGCCTCT-----CCTGCCATGGACTCTCCCTCTTCTGCTTTT-CCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCCCACCCCCGCCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCCGGC-TACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGAGGACCCTGGGATTTCGGACCACCCAGAGGGGCCTCT-GGCGCTCACTCCAATCATCCATCCCTTAT-AGCTTCACCATTTTTGGTTCAAGCAGTGTTCCC-----------TTTCTATCAGGCCTGGTGGCTGTTGGGTGGGGCTCC------------CCAA-GCAAGAGGTGGCCCTGGGCC-GTGAGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCGAGGGGGCTGAGCATTCACCT-GAACTATGGGTGGACTGCCTGGGTGCCATGAAAGAGGCCAGCGTGTGTGAGCTGGGGAGGGCCGCCGCAGCCCCCAGGCACTACCTAT-GAAGCTCCGGCTTCTCCCTCCATC---TTCCTCC--CCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACCTTGC--CATGCCCACACCTACGCCCTCCCCTCCCCGGCCCTC-CACGGCTGCTGCAGCGCACCCATACTCTGCACTTGCCTCACCAGC
i panTro4.chr15_GL392289_random I 1 C 0
s nomLeu3.chr6                   25640446 641 - 121039945 ------------------------------TGCTGGCCCAGCTGAGC------TCCACCTAGCAAGCCCACCCACCTCC-----TCTGCCATGGACTCTCCCCCTTCTGCTTTT-CTCAGCAGGAAGGGCCCAGCCTCACCTATGTGACCTGCAGCCCC----TCG-CAACCAGCTGAGGATCCCCTCTTAGACCT--AAGTCTATGGCCAGTGGCAT---------ATGCCCTCCCTGCCTTCCCCAGGGTCCTTTCAGAGGGTCCTGGGCTTTCTGACCACCCAGAGGAGCCTCT-GGCACTCACTCCAGCCATCCATCCCTTTT-AGCTTCACCATCCT-GGGTAAAACAGTGTTCCT-----------TCTCTATCAGGCCTGGTGGCTGTTGGGTGGGGATCC------------CCAAGGTGAGAGGTGGCGCTGGGCCAGTGGGTTGGAAGGGAGGGTGACCAGAGAAGAGGGAAGCCTGAGAGGGCTGAGCATTGGTTT-GAACTGTGGGTGCACTGCCTGGGTGCCGTGGGAGATGCCAGTGTGTGTGGGCTGGGGAGGGCCACTGCAGCCCCCAGGCACTACCTGT-GAAGCTCCGGCTCCTCCCTCCATC---TTCCTCC--CCTTTTCCTTCCAGCCCCTCTTTTCCAGGAACCTTGC--CACACCTGCACCTGCGTCCTCCCCTCCCCAGCCCT--------------------CCCGCACTCTGTGCTTGCCTCACCAgc
i nomLeu3.chr6                  I 1 C 0
s macFas5.chr7                  106531314 667 - 171882078 ------------------------------TCCTGGCCCAGCCAAAT------CCTGCCTAGCGAGCCCACCTGCCTGT-----CCTGCCACGGACTCTCCCTCTTCTGCTTTT-CCCATCATAAAGGGCCCAGCGTCACCTATGCAACCTGCAGCCCC----CTGCCTACCAGTTGAGGCTCCCCTTTTGGGCTTATAACTGTATGGCCGGTGGCATCCAGC-TACCTGCCCTCCCAGCCTTCCCCAGGGTCC-TTCAGAGGACCCTGAGCTTTCTGCCCACCCAGAGGGACCTCT-GGTGCTCACTCCAGCCAGCCATCCCCTTATAGCTTCACTATTTT-GTTTCAAGCAGTGTTCCT-----------TCTCTATGAGGAGTGGTGGCTGTTGGGTGGGGCTCC------------CCAA-GCAAGAGGTGGCCCTGGGCCAGTGGGTTGGA--AGACGGTGACCAGGGAAGAGGGAAGTCC-TGGGGGCT-GGCATTGGTCT-GAACTGTGGGTGGACTGCCTGGGTGCCATGAGAGAGGTCAGCGTGTGTGGGGTGGGGAGGGCCGCCGCAGCCCCCGGGCACTTCCTAT-GAAGCTCTGGCTTCTCCCTCCATC---TTCCTCC--CCTTTCCCTTCCAGCCTCTCTTTTCCAGGAACCTTGC--CATGCCCACACTTACACTCTCCCCTTCCCGGCCCTCTCGCAGCTGCTACGGTGCACCCATGCTCTGCACTTGCCTCACCAGC
i macFas5.chr7                  I 1 C 0
s papAnu2.chr7                  109012883 648 - 162156779 ------------------------------TGTTGGCCCAGCTGAGC------TCTGCCT---GAGCCCACCCACCTCT-----CCTGTCACAGACTCTCCCTCTTCTGCTTTT-CCCAGCGGGAAGGGCCCAGCCTCACCTATGTGGCCTGCAGACCC----C--ACAAATAGCTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCAT---------ATGCCCTTCCTGCCTCCCCCAGGGTCCTTTCAGAGGGTCCTGGGCTTTCTGACCACCCAGAGGGGCCTCT-GGCGCTCACTCCAGCCATTCATTCCTTTA-AGGTTCACCATCCT-GGGTCAAGCAGTGTTCTT-----------TCTCTGTCAGGCCTGTTGGCTGTTGGGTGGAGCTCG------------CCAAGGCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGAGAGGGTGACCAGAGAAGAGAGAAGCCCAAAGGGGCTAAGCACTGGTCT-GAATTGTGGGTGCACTGCCTGGGTGTCATGGGAGAGGCCAGCGTGTGTGGTCTGGGGAGGGCCGCTGCA-------GGCACTACCTGT-GAAGCTCTggctcctccc----tc---ttcctcc--cctttcccttcgAGCCCCTCTTTTCCAGGAATCTTGC--CACACCTGCACCTgcgccctcccctccccagcccttccACAGCTGCCGCAGCACACCCCTGctctgcgcttgcctcaccagc
i papAnu2.chr7                  I 1 C 0
s chlSab2.chr29                   3117473 665 +  24206276 ------------------------------TGCTGGCCTGGCTGAGC------TCTGTCCAGTGAGCCTGCCCGCCTCT-----CCTGCCACAGACTCTCCCTCTTCTGCTTTT-TTCTGCAGGAAGGGCCCAGCCTCACCTATGTGACCTGCAGTCCC----C---CAACAAGCTGAGGCTTCCCTCTTAGACTTACAAATCTATGGCCAGTGGCATCTGGC-TGCCTGCCCTTCTTGCCTACCCAACGGTCCTCTCAGAGGGTCCTGGGCTTTCTGATGGCCCAGAGGGGCCTCC-GGCGCTCAATCCAACCATCCATCCCTTTT-AGCGTCATCATTCT-GGTTCAAGCAGTATTCCT-----------TCCCTATCAGGCCTGGTGGCTGTTGCTTGGGGCTCC------------CCAAGGTGAGGGGTGGCCCTGGGCCAGTGTGTTGGAAGACAGGGTAACCAGAGAAAAGGGAAGCCTGAGGGGACTGAGCATTGGTCT-GAACTGTGGGTGCACTGCCTGGATGCCGTGGGAGAG----GCGTATGTGGGGTGTGGAGGGCCGCTGCAGCCCCCAGGCACTACCTGT-GAAGCTCCGGCTcttccttccatc---ttccttc--cttttcccttccAGCCC--CTTTTCCAGGAACCTTACTACACACCCGCACCTGCGCCCTCCCCTCCCTGGCCCTCACACAGCTCTTGCAGTGTGCCCATGCTCTGCGCTTGCCTCACCAGC
i chlSab2.chr29                 I 15 I 9
s canFam3.chr9                    5820363 729 -  61074082 CACCAATCTAGGCAAATCAGCTTTTCTGAGTCCCACCCTGGTTGGGCCGCACATGCGCCCAGCAA-CCCACCTGCCACTCTGTCCCTGCCGCTGACTCTCACTCTTCTGCTTTTCCCCAGCAGGAAGGGCCCAGCCTCACCTACGCGACCTGTGGTCCC----C---CGGCCAGCTGAGGCTCCCCTCTTAGACTTATAAGCCTGTGGCCGCTGGCATCCGGCTTGCCTGACCTCCCTGCCT-CCCCAGGGTCCCTTCTGAGGACTCCGGGCTTTCTGCCCACCCAGAGGGGCCTCCAGGTGCCCCCTCCAGCCAT-----CCTTTT-AGCTTTGCCCTCCT-GGTTCAAACACTGTTCTTTCTCCTGTCTCTCTCCACGAGGACTGGTGGCTGTGGCATGGGGCATCAGGACCCACATTCCGAGACTAGGGCTGGTCCTGGGCCAGTACATTGGAAGACATGGGGGCCAGAAAAGAGGGAAGGCAGA-GGGGCCGAGCATGTGCCTGGAGCTGTGGGTGCACTGCCTGG-TGGTGTATGAGAGACCGGCGTGCGTGGCAGAGGGAGGGCCGCCCCGGCCTCCATCCAAGACCCCTGGAAGCTGTGGCCCCCACCCACCTCCAGTTCCTCCTACCTTCCCTTTCTCTCTCCTCCATTCCAGAACCCTTGCC-CACACCCTCAGCTTTGTTTTCGCC--CCCTGTCCTC-CCCTCCTACCCCACCGGGCTTG---GCTGCCCTTGCCTTACCAGT
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e ponAbe2.chr15_random            9408202   0 +  10928107 I

a score=10442.000000
s hg38.chr15_KI270850v1_alt        126796 24 +    430880 T-----CTGGCTTTTCTCTAACCCGTTTT
s panTro4.chr15_GL392289_random    123542 24 -    187897 T-----CTGGCTTTTCTCTAACCCGTTTT
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   25641087 29 - 121039945 tctctgctcacttctctctgctcactttt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106531981 24 - 171882078 T-----CTGGCTTTTCTCTAACCTGTTTT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109013531 28 - 162156779 tctctgctcacttttctct-ccccatttt
i papAnu2.chr7                  C 0 C 0
s canFam3.chr9                    5821092 24 -  61074082 --TCTCTTCCTCCTTCTCT---CCGTTCT
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                   3118138  9 +  24206276 I
e ponAbe2.chr15_random            9408202  0 +  10928107 I

a score=459861.000000
s hg38.chr15_KI270850v1_alt        126820 307 +    430880 CTCTCTGCTTTCTCTCCAACTGCCAGCTGATTGGGTCAGGCAAGTCCATCCCATCCGGGGAGCCCCAGGCCCCACTTCGACCTCTAAACAGATTCCTCCTCTTCTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGTGGGTGTCCTGTGACTTGACAGTGGCTCCCCCAGCCCCAAAGCCAGCCCCCTTCTTCTGTGACTTA-GTCTGTTGTAGTGGTGAGCTGACACGTCCAGGTTTGACCGTTGCTGAAA-CTTGTGCCCCCTCTGTGGTA-TGC------------------------------------------CCCTGCCCTGTTCTATAAATAGCTATAAATTCTC
s panTro4.chr15_GL392289_random    123566 309 -    187897 CTCTCTGCTTTCTCTCCAACTGCCAGCTGATCGGGTCAGGCAAGTCCATCCCATCCTGAGAGCCCCAGGCCCCACTTCGACCTCTAAACACATCCCTCCTCTTCTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCTCCCCCAGCCCCAAAGCCAGCCCCCTTCATCTGTGACTTAAGTCTGTTGTAGCGGTGAGCTGACACGTCCAGGTTTGACCATTGCTGAAAACTTGTGCCCCCTCTGTGGTA-TGC------------------------------------------CTCTGCCCTGTTCTGTAAATAGCTATAAATTCTC
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   25641116 301 - 121039945 ctctctgctttctctcCAACTGCCAGCTGATCCAGTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGCCCCACTTTGACCTCTAAACAGAT-CCTCCTCTTCTCGGAGGCCTCTCTTTCCAAGCCTGCCTGGGCGGGTGTCCTG-GACTTGACAGTGGCTCCCCAG--CCCAAAGCCAGCCCCCTTCATCTGTGACTTA-GCCTGTCGTAGTGGTGAGCTGACACATCTAGGTGTGACCATTGCTGAAAACTTGTGCCCC--CTGTGGTA-TGC------------------------------------------C-CTGCCCTGTTCTACAAatatctataaatactc
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106532005 307 - 171882078 CTCTCTGCGTTCTCTCCAA-TGCCAGCTGATTGGGTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGTCCCCCTTCGACCTCTGAACAGATCCCTCCTCTTCTCAGAGATTTCCCTTTCCAAGGCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCTCCCGCAGCCCCAGAGCCAGCCCCCTTCATCTGTGACTTA-GTCTGTTGTAGTGGTGAGCTGCCACATCCAGCTGTGACCGTTGCTGAAAACTTGTGCCCCCTCTGTGGTA-TGC------------------------------------------CCCTGCCCTGTTCTATAAATAGCTATAAATTCTc
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109013559 347 - 162156779 ctctctgctttctctccaaCTGCCAGCTGATTGGGTCAGACAAATCCATCCTGTCCTGAGAGCCCCAGGCCCCACTTTGACTTCTAAACAGAT-CCTCCTCTTCTCTGAGGCCTCCCTTTCCAAGCCTGCCTGCGCGGGTGTCCTGTGACTTGACAGTGGCTCCC-CAG-CCCAAAGCCAGCCCCCTTCGTGTGTGACTTA-GTCTGTTGTAGTGGTGAGCTGACACATCCAGGTGTGACCGTTCCTGAAAACTTGTGCCCCTTCTGTGGTA-TGCCCTgccctgttctataaatatcCATAAATACTCTGTGGCATGCCCTgccctgttctataaatatctataaatactc
i papAnu2.chr7                  C 0 I 39
s chlSab2.chr29                   3118147 299 +  24206276 CTTTCTGC-TTCTCTCGAACTGCCCGCTGATCAGGTCAGGCAAGTCCATCCTGTCCTGAGAGTCCCAGGCCCTGCTTCGACCTCTAAACAGATCTCTCCTCTTCTCGGAGGCCTCCCTTTCCAAGCCTGCCTGTGCAGGTGTCCTGTGACTTGACAGTGGATCCC-CAGTCCCAAAG-------CCTTCATCTGTGACTTA-GTCTGTTGTAGTGCTGAGCTGACACTTCCAGGTGTGACCATTGCTGAAAACTTGTGTCCCCTCTGTGGTA-TGC------------------------------------------CCCTGCCCTGTTCtataaatagctataaatactc
i chlSab2.chr29                 I 9 I 39
s canFam3.chr9                    5821116 301 -  61074082 CTTTTTGCTTTCTCTCCAACTGCCAGCCGATCGGGTCAGGCAAGTCCGTCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGATCCCTCTATTCCTCGGAGACCTCCCTTTCCAAGCCTGCCTGGACGGCTGTTCTGTGACTTGACAGTGGCTCCC-CAGCCCCAAAGCC-TCCCCCTTCATCTGTGACTTA-GTCTGTTGTAGTGGTGAGCTGACACATCCAGGCGTGA-TATTGGTGAAAACTTGTGCCCC-TCTGTGGTATTGC------------------------------------------TCCTATCCCATTCTATAAATAACTATAAAT----
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e ponAbe2.chr15_random            9408202   0 +  10928107 I

a score=-2680.000000
s hg38.chr15_KI270850v1_alt        127127  3 +    430880 T--------------------CT
s panTro4.chr15_GL392289_random    123875 23 -    187897 ATATATatacacatacacataca
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106532312  3 - 171882078 --------------------aca
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109013945  3 - 162156779 --------------------act
i papAnu2.chr7                  I 39 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5821417  0 -  61074082 C
e chlSab2.chr29                   3118446 39 +  24206276 I
e nomLeu3.chr6                   25641417  0 - 121039945 C
e ponAbe2.chr15_random            9408202  0 +  10928107 I

a score=30896.000000
s hg38.chr15_KI270850v1_alt        127130 38 +    430880 cacacacacacacacacacacacacaTATATACATAT-A
s panTro4.chr15_GL392289_random    123898 38 -    187897 cacacacacacacacacacacacacacacatacatat-a
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79938038 39 +  99152023 cacacacacacacacatacagacgtatatatatacatca
i ponAbe2.chr15                 I 11 C 0
s nomLeu3.chr6                   25641417 25 - 121039945 -------------atatatatatagatatataCACAC-C
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106532315 38 - 171882078 gacacacacacacacacacacacaaacacacacacac-a
i macFas5.chr7                  C 0 I 5
s papAnu2.chr7                  109013948 38 - 162156779 gatacatatatacacacacacacatatatatacacat-a
i papAnu2.chr7                  C 0 I 6
s canFam3.chr9                    5821417 29 -  61074082 ---acacacacacacacacacatacaTATATG-------
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                   3118446 39 +  24206276 I

a score=1624305.000000
s hg38.chr15_KI270850v1_alt        127168 922 +    430880 TATACGTGGCCAACTGCCTCGCCTCTAGCACTGGGAATCAGTCCCCGTGCTGTGCTTGTGGAGTCTTGTAGCCCA---GCAAGAGGAAGCTGTC-TCCTGACATC-----GCCC-CTCCAAAGTGCACCACCTCCAGTGAGCTTCCGGGACATGCGCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCGCCCTTCTGGCCAAGCATGGCGGTGCTGTGCAGGCAGCTGTGTGGCCTGACAGTCT-CTACCAGTCCTGCTGTCCCTTGGCTGAG----A----AACCCATTTCTGGATGACAGAGAATGTGTCCTCTGCTGGC-TGTGTTCTCTATGGAGCTCAGGGGA--------------------------------GGGAAAAGGCCAAGCCATTTTTAGGGTGCTGTTGGGAGCAGTGA--AAAGGTCACACCCTTTTCAAGGGACACTTTTCCTGGAAAGTCCCTGGAGCTTAGCTGGCTCTTACCCTGTGAAGCCGGCTCTGGCCACTAGGGGACAGGGCCCTGAACTCAGCCTGGAGGGAACCTGCGGGGC----AGCCGGCACT------------------CTGGAGGGACAG--------------------------------------ACAGGCCACCCGGTGCAGACAGGAGAGGGAGGCA-GGGGGACAGAACGG-AAGACACCTGGGGTGGATGGAAGTCAGTGCCCTTGGGCACTGGTATCTGTCTTCCCTG--CCACAGCTAGATCAGGCTTCTCAACCAGTTGGCTGTCAGGGCCAGAGTGTACTCCGTAGGCGC---CATGGCAGTCCCCATGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCC----AGCTGGACATGCTGAGACACTCTGGG------------------------------------------GCTCCTCATTCAGTG------GGACAAACTGCAGGAC-------CCAGTGA-GGGAAATGGGAACATACCAGGCCGAGCAGTATGGCTAAATCCATTTATTCCaaaatcaaa----agcaaaaaaaaaaaaaaaaaC
s panTro4.chr15_GL392289_random    123936 925 -    187897 tacaTGTGGTCGACTGCCTCACCTCTAGAACTGGGAATCAGTCCCCGTGCTGTGCTTGTGGAGTCTTGTAGCCCA---GCAAGAGGAAGCTGTC-TCCTGACATC-----GCCC-CTCCAAAGTGCACCACCTCCAGTGAGCTTCCGGGACATGCGCGGCCTGTGGACAGCCAGCCCCTGCCATCCCTCCCGCCCTTCTAGCCAAGCATGGCGGCACTGTGCAGGCAGCCGTGTGGCCTGACAGTCT-CTACCAGTCCTGCTGTCCCTTGGCTGAG----A----AACCCATTTCTGAATGACAGAGAATGTGTCCTCTGCTGGC-TGTGTTCTCTATGGAGCTCAGGGGA--------------------------------GGGAAAAG-CCAAGCCATTTTTAGGGTGCTGTTGGCAGCAGTGA--AAAGGTCACACCCTTTTCAAGGGACACTTTTCCTGGAAAGTCCCTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCCGGCTCTGGCCACTAGGGCACAGGGCCCTGAACTCAGCCTGGAGGGAGCCTGTGGGGC----AGCAGGCACT------------------CTGGAGGGACAG--------------------------------------ACAGGCCACCCGGTGCAGACAGGAGAGGGAGGCA-GGGGGATGGAATGG-AAGACACCTGGGGTGGATGGAAGTCAGTGCCCTTGGGCACTGGTATCTGTCTTCCTGA--CCACAGCTAGATCAGGCTTCTCAACCTGTTGGCTGTCAGGGCCGGACTATACTCCATAGGCGC---CATGGCAGTCCTCGTGAAATGCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATTCCCCACAGCCC----AGCTGGACATGCTGAGACACTCTGGG------------------------------------------GCTCCTCGTTGAGTG------GGAAAAACTGCAGGCC-------CCAGTGA-GGGAAACGGGAACATGCCAGGCCGAGCAGTATGGCTAAATCCATTTATTCcaaaatcaaagcaaaacaaaaacaaaaacaaaaac
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79938077 922 +  99152023 tacaCGTGGCCGACTGCCTTGCCTCTAGAACTGGGAATCAGTCCCCGTGCTGTGCTTGTGGAGTCCTGTAGCCCA---GCAAGAGGAAGCTGTC-TCCAGACATC-----GCCC-CTCCAAAGTGCACCACCTCCAGTGAGCTTCCGTGACATGCGCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCGCCCTTCTGGCCAAGCATGGCAGTGCTGTGCAGGCAGCTGTGTGGCCTGACAGTCT-CTACCAGTCCTGCTGTCCCTCGGCTGAG----A----AACCCATTTCTGGATGACAGAGAATGTGTCCTCTGCTGGC-TGTGTTCTCTATGGAGCTCAGGGGA--------------------------------GGAAAAAGGCCAAGCCATTTTTAGGGTGCTGTTGGCAGTGGTGA--AAAGGTCACACCCTTTTCAAGGGACTCTTTTCCTGGAAAGTCCCTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCCAGCTCTGGCCACTAGGGGACAGGGCCATGAACTCAGCCTGGAGGGAGCCTGCGGGGC----AGCTGGCACT------------------CTGGAGGGACAG--------------------------------------ACAGGCCACCCGGTGCAGACAGGAGAGGGAGGCA-GGGGGACAGAACGG-AAGACACCTGGGGTGGATGGAAGTCAGTGCCCTTGGGCGCTGGTATCTGTCTTCCCGG--CCACCGCTAGATCAGGCTTCTCAACCTGTTGGCTGTCAGGGCCGGACTGTACTCCGTAGGTGC---CATGACAGTCCCCATGAAATCCACCAGGTGTCACCAGGCAACATACAGGTAACAGGCCTGGAAGATCCCCCACAGCCC----AGCTGGACATGCTGAGACACTCTGGG------------------------------------------GCTCCTTGTTGAGTG------GGAAAAACTGCAGGAC-------CCAGTGA-GGTAAACGGGAACATACCAGGCCAAGCAGTATGGCTAAATCCATTTATTCCAAAATCAAA----AGCaaaaaaaaaaaaacaaac
i ponAbe2.chr15                 C 0 M 30000
s nomLeu3.chr6                   25641442 920 - 121039945 TACACATGGCCGACCGCCTCGCCTCTAGCACTGGGAATCAGTCACCGTGCTGTCCTTGTGGAGTCTTGTGGCCCA---ACAAGAGGAAGGTCTC-CCCTGACACT-----GCCC-CTCCAAAGTGTGCCACCTCCAGTGAGCCTCC-TGTCATGCCCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACCCCCC--ACCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCT-CTACCAGTCCTACTGTCCCTCGGCTGAGAAACA----AACCTATTTCTGGATAACGGGGAATGTGTCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTCAGGGAA--------------------------------GGGGAAAT-CCAAGCCATTTCTAGGGTGCTGTTGGGAGGAGTGA--AAAGGCCACATCCTTTCCAAGGGACACTTTTCCTAGAAAGCCCCTGGAGCTTAGCTGGCTTTTATCCTGTGAAGCCGGCTGTGGCCACTAGGGGGCAGGGCCATGAACTCAGCCTGGA-GGAGCCTGCGGGGC----AGCCAGCGCTAACAGGCCACCAGGTGCACTGGAGGGACAG---------------------------------ACAGAACAGGCCACCGGGTGCAGACAGGCGACGGAGGCA-GGGGGATGGAACGG-AAGATGCCTGGGGTGGATGGAAGTCGGTGCCCTTGGGTGCTGGTATCTGCCTTCCTGG--CCACCGCTACAT---------------GTTGGCTGTCAGGGCCGGACTGTGCCCTACAGGCAC---CACGGCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATCCCCAACAGCCC----AGCTGGACATGCTCAGACACTCTGGG------------------------------------------GCTCCTCGTTCAGTG------GCACAAACTCCAGAAC-------CCAGTGA-GGGAAACGGGAACCCACCAGGCTGAGCGCTATGGCTAAATCCATTTACTCCAAAATGAAA----AGCAAAATAAGG---------
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106532358 917 - 171882078 -acacGTGGCCAACTGCCTGGCCTCTAGCACTGGGAATCAGTCCTCGTGCTGTCCTTGTGGAGTCTTGTGGCCCA---ACAAGAGGAAGCTGTC-TCCTGACATTGCCCTGCCC-CTCGAAAGGGCACCACCTCCAGGGAGCCTCCCTGTCATGCCCGGCCTGTGGACAGCCAGCCCCCGCCATCCTTCCCGCCTCCT-GGGCAAGCATGGGGGTGCTGTGCAGGCAGCTGTGTGGACTGACAGTCT-T--CCAGTCCTGCTGTCCCTCGGCTGAG----ACTCCAACCCATTTCTGGATGACAGAGAATGTGTCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTCAGGGGA--------------------------------GGGAAAAGTCCAAGCCATTTTTAGGGTGCTTTTGGGAGCGGTGA--AAAGGTCACACCCTTTCCAAGGGACACTTTTCCTAGAAAGTCCCTGGAGCTTAGCGGGTTCTTATCCTGTGAAGCCGGATCTGGCCACTAGGGGGCAGGGCCGTGAACTCAACCTGGAGGGAGCCTGCGGGGC----AGCCTGCACT------------------CTGGAGGGACAG--------------------------------------ACAGGCCACCCGGTGCAGACAGGAGAGGGAGGCA-GGGGGACGGAATGG-AAGACACCTGGGGTGGGTGAAAGTCAGTGCCCTCGGGTGCTGGTGT-TGTCTTCCCGG--CCACAGCTAGATCAGTCTTCTGAACCTGTTGGCCGTCAGGGCTGCACTGTGCCCATTAGGCAC---CATGGCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATCCAGACAACAGGCCTGGAAGATTCCCAACAGCCC----AACTGGGCATGCTCAGACCCTCTGGG------------------------------------------GCTCCTCTTTCAATG------GGACAAACTGCAGGAC-------CCACTGA-GGGAAACGGGAACATACCAGGCTGAGCAGTATAGCTAAATCCATTTATTCCCAAATAAAA----AGCAAAGAAAAC---------
i macFas5.chr7                  I 5 C 0
s papAnu2.chr7                  109013992 949 - 162156779 tacacaTGGCCGACCGCCTCGCCTCTAGCGCTGGGAATCAGTCACCGTGCTGTCCTTGTGGAATCTTGTGGCCCA---ACAAGAGAAAACTCTC-CCCTGACATT------CCC-CTCCAAATTGCACCACCTCCAGTGAGCCTCCCTGTCATGCGCAGCCTGTGGACAGCCACCCTCCGCCATCCCTCCCAGCCCCC--ACCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGACTGAAAGTCT-CCACCAGTTCTGTTGTTCCTCAGCTGAG----AATCAAACCCATTTCTGGATGGTGGGGAATGTGTCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTCAGGGGA--------------------------------GGGAAAAGGCCCAGCCATGTCTAGGGTGCTGTTGGGAGAGGTGA--AAAGGCCACACCCTTTCTGAGGGACAC--TTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCTGGCTGTGGCCACT-GGGGGCAGGGCCATGAACTCAGCCTGGA-GGAGCCTGCAGGGC----ACCTGTCACT------------------CTGGAGGGGCAGACAGAACCGGTCACGAGGTGCACTGAGGGGCAGACAGAACAGGCCACCAGGCGCAgacaggagaggcaggcaggggggACAGAATGG-AAGATGCCTGGGGTGGATGGAAGTCAGGGCCCTTGAGTGCTGGTATCTGCCTTCCTGG--CCACCACTATATCAGGCTTCCGAGCCTGTTGGCTGTCAGGGCCTCACTGTGCCCCATAGGTGC---CATGACAGTCCCTGTGAAATCCACCAGGTGTCACCAATCAGCATACAGGTAACAGGCCTGGAAGGTTCCCAACAGCCA----AGCTGGACATGCTCAGACACTCTGGG------------------------------------------GCTCCTCGTTCAGTG------ACACAAACTCCAGGAC-------CCAGTGA-GGGAAATGGGAACCCACCAGGCTGAGCAGTATGGCTAAATCCATTTAGTCcataatgaaa----agcaaaataaac---------
i papAnu2.chr7                  I 6 C 0
s chlSab2.chr29                   3118485 901 +  24206276 TATACATGGCCGATGGCCTCGCCTCTAGCACTGGGAATAAGTCCCAGTGCTGTCCTTGTGGAGTCTTGTGGCCCA---ACAAGAGAAAGCTGTC-CCCTGACATC-----GCCC-CTCCAAAGTGTGCCACCTCCAGTGAG----CCTGTCA---------TGTGGACAGCCAGCCCCCGCCATCCCTCCCACCCTCC--ACCAAGCATGGGGGTGCTGTGCAGGCAGCTGCGTGGACTGACAGTCT-T--CCAGTCCTGCTGTCCCTCGGCTGAG----A----AACCCATTTCTGGATGACGGGGAATGTGTCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTCAGGGGA--------------------------------GGGGAAAGGCCAAGCCATTTCTAGGGTGCTGTTGGGAGTGGTGA--AAAGGCTACAGCCTTTCCAAGGGACACATTTCCTGGAAAGTCCCTGGAGTTTAGCTGGCTCTTATGCTGTGAAGCCGGCTCTGGCCACTAGGGGGCAGGGTCATGAACTCAGCCTGGAGGGAGACTGAGGGGC----AGCCTGCACT------------------CTGTAAGGACAG---------------------------------ACAGAACAGGCCACCCAGTGCAGACAGGAGAGGGAGGTA-GGCGGACGGAAGGG-AAGACACCTGGGGTAGATGGAAGTCAGTGCCCTTGGGTGCTGGTATCTGTCTTCCCGG--CCACAGCTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCCGGACTGTGCCCCATAGGTGC---CATGGCAGTCCCCATCAAATCCACCAGGCGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATCCCCAACAGCCC----AGCTGGACATGCTCAGACACTCTGGG------------------------------------------GCTCCTCGTTCTGTG------GGACAAACTGCAGGAC-------CCAGTGA-GGGAAACAGGAACACACCAGGCTGAGCTGTATGGCTAAATCCATTTATTCCACAATGAAA----AGCGAAATAAAC---------
i chlSab2.chr29                 I 39 C 0
s canFam3.chr9                    5821446 983 -  61074082 -----GCTGCC-ACAGCCTCGCCTCTAGTGTTGGGAACCAATCACCACGCTGTCCTTGAGGAGTCTTGTGGTCCAACTACAGGGGAACACTGTCACCCTGACATC-----CCCCTCTCCAAAGTGTGCCACCTCCGATGAGCCTCCCTGTCATGCCCGGCCTGTGGACGGCCA--CTCTTCCGTCCCTCCCCCGCTCG--AGCA--CAGGGGGGCGCTGTACTGGCAGCTGTGTGGTCC-----TCTGCCACCAGTCTTGCTGTCTCTTGGCTGAG----AATAAAACCCATTTCTGGACGATGGGAGAC-TGTCCTCTGCTGGCTTGTGTT-TTTGTGGAGTTCAGGGGAAGGGGAAGGCTTCAACCTTGGGATGAAGCGGTGGGGAAGGGCCCCACCATTGCTAGGGTGTTGGGATGAGTGGCGAAGAGAGGTCCTGTCCTTTCCAGGG-----CCTACTGGGAAAGCACCTGCGGATTCATGGGTTATCTTTCTGGGAAGCCTGCTCTGCCCACTAGGGGGCAGGGGCACCAACTCAGCCCAGAAGGAGGATTGGGGGCCCCTGGCACGCACT------------------GTGCAGGGGAAG----------------------------------GACAACAGGCCACC---------------AGAGGGCCA-GGGTGATGAGAGGGCAAAGTGCCTG----AACTGGAAGGCAGCACTCTTGGTGCGAGGACCCTGCTTTCCCCAACCCAGGATTAGATCAGGC-TCTGAGCCTTTGGACCATTAAGACAGGAGTGCTCCTTAGAGTCCCATGCATGGCAGGGGCCCTGGGATCCCCCAGGCTTCCCCAAGCAGCATGGGGGTGACAGGCCTGGATCATCTCCAACAGCTCTGTTTGCTAGGCAGGCTCAGAGACACTGGGGCTTTGCACAATCCAGAAGTCTGCCCTCTGCTGGCAGGATCTGCTCCCTGTTCAATGCCCACAGTGCAGACTCCAGGACCTAGGGGCCAGTGACTGGAAACAGGCACACACAAGGCTAAACAGTATGGCTAAATCCATTTATTCCGAAATAAAA----AGCAAAC--------------
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I

a score=1365.000000
s hg38.chr15_KI270850v1_alt        128090 1 +    430880 A
s panTro4.chr15_GL392289_random    124861 1 -    187897 a
i panTro4.chr15_GL392289_random C 0 I 25
s macFas5.chr7                  106533275 1 - 171882078 A
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109014941 1 - 162156779 a
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3119386 1 +  24206276 A
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5822429 1 -  61074082 A
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e nomLeu3.chr6                   25642362 0 - 121039945 C
e ponAbe2.chr15                  79938999 30000 +  99152023 M

a score=755243.000000
s hg38.chr15_KI270850v1_alt        128091 445 +    430880 GGAGTCCC--ATCACC-AGGGAGCCATGACCCCATCCCCGCCTCCTTCCTCGCTCCTATGCTAGCAATAAATAAGTTTCC-CAGTCGCGAATAATTATAAGAACCTCTTCCTCATATGCCAGCTGCAACCTCCGCTAGGTACGATACAG-----------------------------AATGTTACACAGCTACAGTATGTACACGGGGGAAGGG-GGGCCACCCC-CAGCAGCCTGTGCCCTGGCCTGGTCTACAGTTAACTCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCTCTGAGTAAGAAGATG--GGAGCCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGAAGGCCGTCAGA-----CCT-------------------CCTCCAAACAAACCA---ACTCCACCAACCTCTGGCTCTT----------AAATAACAAACATCATCATCCAGAAATGTAAGGACTCAGCCTTG-GTCAAGGTGGTAAAGGGTCTG------TTTGTCTCCCTCCATTAGAC-------------------
s panTro4.chr15_GL392289_random    124887 440 -    187897 GGGGTCCC--ATCACC-AGGGAGCCATGACCCCATCCCCGCCCCCATCATCGCTCCTATGCTAACAATGAATAAGTTTCC-CAGCCGCGAATAATTATAAGAACCTCTTCCTCATATACCAGCTGCAACCTCCGCTAGGTACGATACAG-----------------------------AATGTTACACAGCTACAGTATGTACACGGGGGAAGGG-GGGC-ACCCC-CAGCAGCCTGTGCCCTGGCCTGGTCTACAGTTAACTCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCTCTGAGTAAGAAGATG--GGAGCCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGGAGGCCGTCAGA-----CCT-------------------CCTCCAAACAAACCA---ACTCCACCAACCTCTGGCTTTT----------AAATAACA----TCATCATCCAGAAATGTAAGGACTCAGCCTTG-GTCAAGGTGGTAAAGGGTCTG------TTTGTCTCCCTCCATTAGAC-------------------
i panTro4.chr15_GL392289_random I 25 C 0
s ponAbe2.chr15                  79969473 445 +  99152023 GGGGTCCC--ATCACC-AGGGAGCCATGACCCCATCCCCGCCTCCTTCCTTGCTCCTATGCTAGCAACGAATAAGTTTCC-CAGCTGCAAATAATTATAAGAACCTCTTCCTCATATGCCAGCTGCAATCTCCGCTAGGTACGATACAG-----------------------------AATGTTATACAGATACAGTATGTACACGGGGGAAGGG-GGACCACCCC-CAGCAGTCTGTGCCCTCGCCTGGTCTACAGTTAACTCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCTCTGAGTAAGAAGATG--GGAGCCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGGAGGCCGTCAGA-----CCT-------------------CCTCCAAACCAACCA---ACTCCACCAACCTCTGGCTCTA----------AAATAACAAACATCATCATCCAGAAATGTAAGGACTCGGCCTTG-CTCAAGGTGGTAGAGGGTCTG------TTTGTCTCCCTCCATTAGAC-------------------
i ponAbe2.chr15                 M 30000 C 0
s nomLeu3.chr6                   25642362 471 - 121039945 GGAGTCAC--ATCACC-AGGGAGCCACAACCCCATCCCGGCCTCCTTCCTCTGTCCTATGCTATCAATAAATAAGCTTCC-CAGCCACAAATAATGATTAGAACCTCCTCCTCATATGCCAGCTCCAACCTCCACTAGGTACGATACAGGGGGTGGCCCTACCCCCTGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAGGG-GGTCCA-CCC-CAGCAGCCCGTGCCCTCGTCTGCTCTACAGTTAGCCCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCTCTGAATAAGAAGATG--GGAGCCCCC--GAGGGAAAAGTTGCTTTGGTGAGAGTAGAGAGGCCATCAGG-----CCT-------------------CCTCCAAACAAACCA---GCTCCACCAGCCTCTGGCTCTT----------CAATAACAATCAGCATCATCCAGAAATTGAAGGACTCAGCCCTG-GTCAAGGTGGCAAAGGGTCTG------TTTTCCTCCCCCCATTAGAC-------------------
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106533276 449 - 171882078 GGAGTCCC--ATCACC-AGGGAGCCATGACTCCATCCCCGCCTCCTTCCTCGCTCCTATGCTAGCAATAAATAAGTTTCC-CAGCTGCAAATAACTATCAGAACCTCTTCTTCATATGCCAGCTGCAACCTCCGCTAGGTACGATAC-------------------------ATACAGAATGTTACACAGATACAGTATGTACATGGGGGAAGGGCGGGTCACCCC-TAGCAGCCCGTGCCCTCGCCTGGTCTACAGTTAGCTCC-ACTGTCCC---GCCTCA------GATGCC-------------------------------------------TCTCTGAGTAAGATGATG--GGAGCACC-CCGTGAGAAAAGTTGCCTCGGTGAGAGTAAGGAGGCCATCGCA-----CCT-------------------CCTCCAAAGAAACCA---ACTCCATCAACCTCTGGCTCTT----------AAATAACAAACATCATCATCCAGAAATGTAAGGACTCAGCCTTG-GTCAAGGTGGTAAAGGGTCTG------TTTTTCTCTCTTCATTAGAC-------------------
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109014942 474 - 162156779 ggaGTCAT--ATCACC-AGGGAGCCAcaaccccatccccacctccttccTCTGTCCTGTGCTATCAATAAATAAGTCTCC-CAGACATAAATAATGACTAGAACCTCCTCCCCATATGCCAGCTCCAACCTCCATGAGGTACAATACAGGGGGTGACCCTAACCCCTGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAGGA-GGGTCACCCC--AGCAGCCCGTGCCCTCGCCTGCTCTACACTTAGCCCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCTCCCAGTAAGAAGACG--GGAGCCCCTCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGG-----CCT-------------------CCTCCAAACAAACCA---ACTCCACCAGCCTCTGGCTCTT----------CAATAATAAACATCACCTTCCAGGAATGTAAGGACTCAGCCCTGAGTCAAGGTGGTGAAGGGTCTG------GTTGTCTGTCCTTCTTAAAC-------------------
i papAnu2.chr7                  C 0 I 463
s chlSab2.chr29                   3119387 460 +  24206276 GGAGTCAC--ATCACCAAGGGAGCCACGACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGGAATAAATAAGTTTCC-CAGCTGCAAATAATTATTAGAACCTCCTCTCCTTATGCCAGCTCCAACCTCCACTAGGTACAATACAGGGGGTGGCCCTACCCCC---------CAGAATGTTACACAAATTCAATGTGTATACTGGGGAAGCGGGAGTCATCCC--AGCAGCCCATGCCCTCACTTGGTCTACTGTTAGCCCC-ACTGTCCT---GGTTCA------GTTGCC-------------------------------------------TCTCTGAATAAGAAGATG--GGAGCCC--CCGAGGGAAAAGTTGCTTTGGTGAGAGTAGAGAGGTCATCAGG-----CCT-------------------CCTCCAAACAAACCA---ACTCCATCAGCCTCTGGTTCTT----------AAATAACAAGCATCATCGTCCAGAAATTCAAGGACTCAGCCGTG-GTCAAGGTGGCAAAAAGTCTG----------TCTCCCCCCATTAGAC-------------------
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5822430 571 -  61074082 GAAGTTGTGAGTCACC-TGGG---CGGAACCCCGTCCCCGCCTCCTTCCTCTGTCCTATGCTATCAATAAATAAGTTTCCTCATCCCCAAATATTTAATAGAACTTCCTCCCCATTTGCCAGTTCCAACCTCTGC----TATGATACAGGGGGCTGCCCTATCCCC-AGAATATACAAAATGTTACACAGGTACAGTATATACACTGGGGAGGGA-GGCCCCCCCCCCACCAGCTTATGCCTTTGCCTGGCCTG-GGTTAGCCCCAACTGTCCTAAGGCCTGGGAGAGTGCTGCCCAGTCATTGAGCTGGACAGGGGGAGCACTTGTTCCCCAAAGTGCCTCTGAAT-AGAGGATGCCTGAGCCCCTCTGAAGGA----CTGC-TTGGTGGGGGTGAGGAGGCCACCAGGGAGCCCCTGCCCCCCAAGAAAGGGAGCCCTCTAAATAAACTATGTTTTTATTGAGCCTCTGGCTCTTTGTTTTTCTGGAACGATGAGTA-----GTCCAGA----TAAAGACACAGCCCTT-GCCAAGGTGGCAAGAGGTCTGCACCTATTTGTCTCCCCCAATTAGGAGGCTTTTCACACCCCTCTC
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I

a score=175406.000000
s hg38.chr15_KI270850v1_alt        128536 114 +    430880 AGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGCTGACTGGGGAG--------GGGTTGTAGGGACATGGTGGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGACAGGGGCC
s panTro4.chr15_GL392289_random    125327 114 -    187897 AAGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGCTGACTGGGGAG--------GGGTTGCAGGGACATGGTGGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGACAGGGGCC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79969918 114 +  99152023 AGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAG--------GGGTTGTAGGGACATGGTGGGGGTGAAGAATCCAGACCCACTTCTCCAGGCTTATGCTGACAGGGGCC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25642833 114 - 121039945 AGGGGTCTTGTCTTGCTACCCTAACGGTAAAGGGGTGACTGGGAAA--------GGGTGGTAGGAACATGGTGGGGGAGGAGACTCCAGCCCCACTTCTCCAGGCTTATGCTGACAGGGGCC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106533725 113 - 171882078 AGGGGTCTTGTGTTGCTA-CCTAATGGTAAAAAGGTGACTGGGAAG--------GCGTTGTAGGGACATGGTGGGGGTGAAGACTCCAGACTCACTTCTCCAGGCTCATGCTGACAGGGGCC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3119847 114 +  24206276 AGGGGTCTTGTCTTGCTACCCTAGTGGTAAACGGGTAACTGGGAAG--------GGGTGGCAGGGACATGGTGGGGGTGAAGACTCTAGACCCACTTCTCCAGGCTTATGCTGACAGGGGCC
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5823001 121 -  61074082 AGGGGTCTTATCTTGCTAGTTTAGGGATAAAAGGGTAACTGGGAAGGAATGATAGGGTGGCAGGGACAGGGTGGGAGCAGAGCCCCCGGCCCCACTTCTCCAGGTTT-TGCTTGCTGGTGTC
i canFam3.chr9                  C 0 I 2
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=86254.000000
s hg38.chr15_KI270850v1_alt        128650 103 +    430880 TGCTTTTATTTATTTTTATTTTTATCCCATGATGT-TTTT-TTAAATCCCGTAACTTCTTTTTCAGAACTTTTTAAAAAAACTTTTCATAAAACTTTTTTTTTTT
s panTro4.chr15_GL392289_random    125441 103 -    187897 TGCttttatttatttttatttttatCCCATGATGT-TTTT-TTAAATCCCGTAACTTCTTTTTCAGAACTTTTAAAAAAAACTTTTCATAAAACTTTTTTTTTTT
i panTro4.chr15_GL392289_random C 0 I 1
s ponAbe2.chr15                  79970032 102 +  99152023 TGCttttatttatttttatttttatCCCATGAT-T-TTTT-TTAAATCCCGTAACTTCTTTTTCAGAACTTTTTAAAAAAACTTTTCATAAAACTTTTTCTTTTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25642947  93 - 121039945 TGCTTTTATTTATTTTTATTTTTATCCCATGACTTATTTT-TTTAATCCCATAACTTCTTTTTCATAAT-----------ACtttttttaagctttttttttttt
i nomLeu3.chr6                  C 0 I 315
s macFas5.chr7                  106533838  89 - 171882078 TGCTTTTATTTATTTT------TATCCCATGACTT-TTTC--------CCATAACTTCTTCCTCATAACTTTTTAAAAAAACTTTTCAGGCAACTTTTTTTTTT-
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3119961 101 +  24206276 TGCTTTTATTTATTTTTATTTATATCCTGTGACTT-TTTTTTTTAATACCATAACTTCTTTTTCATAACTTTTAAAAATAACTTTTCATAAAAC--TTTTTTCT-
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122   2 -  61074082 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=63247.000000
s hg38.chr15_KI270850v1_alt        128753 76 +    430880 ACTTTTTTCCCACATCTTTTTTTGCCACAACTTTTCCACAGTATTTTTTATCCCGTAACTTTTTCATCCCACAAC----T
s panTro4.chr15_GL392289_random    125545 76 -    187897 ACTTTTTTCCCACAACTTTTTTTGCCACAACTCTTCCACAGTATTTTTTATCCCGTAACTTTTTCATCCCACAAC----T
i panTro4.chr15_GL392289_random I 1 C 0
s ponAbe2.chr15                  79970134 79 +  99152023 ACTTTTTTTCCACAA-TTTTTTTCCCACAACTTTTCCACAGTATTTTTTATCCCGTAACTTTTTCATCCCACAACTTTTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25643355 80 - 121039945 ACTTTTCTTCCACAACTTTTTTTGCCACAACTTTTCCACAATATTTTTTATCCCATAACTTTTTCATCCCACAACCTTTT
i nomLeu3.chr6                  I 315 C 0
s macFas5.chr7                  106533927 71 - 171882078 ACTTTTTTTGGAC-----TTTTTGCCACAATTTTTCCACCATATTTTTTATCCCATAACTTTTCCATCCCACAAC----T
i macFas5.chr7                  C 0 I 1
s chlSab2.chr29                   3120062 55 +  24206276 ACTTTTTTGACAC-----ACTTTTCCACG----------------TTTTGCCCCATAACTCTTTCATCCCATAAC----T
i chlSab2.chr29                 C 0 I 14
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122  2 -  61074082 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=5778.000000
s hg38.chr15_KI270850v1_alt        128829 14 +    430880 TTAATTCCTGTAA-T
s panTro4.chr15_GL392289_random    125621 15 -    187897 TTAATTCCTGTGACT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79970213 15 +  99152023 TTAATTCCTGTAACT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25643435 11 - 121039945 TTA--TCCCATAA--
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106533999 15 - 171882078 TTAATTCCTGTAACT
i macFas5.chr7                  I 1 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122  2 -  61074082 I
e chlSab2.chr29                   3120117 14 +  24206276 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=170658.000000
s hg38.chr15_KI270850v1_alt        128843 146 +    430880 TTTTTAGTTTGTGTTCTTTTAATAAACACACTTACATGGTTACAATTTTGTAAGAATAAAAACCGATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTCAAGACACACAAAATTTT
s panTro4.chr15_GL392289_random    125636 144 -    187897 TTTTTAGTTTGTGTTCTTTTAATAAACACACTTACATGGTTACAATTTTGTAAGAATAAAAACCGATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTGAAGACACA--AAATTTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79970228 146 +  99152023 ATTTTAGTTTGTGTTCTTTTAATAAACACACTTACATAGTTACAATTTTGTAAGAATAAAAACCGATTATCTCATGCCAAGCGTGCCCAGCATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTCAAGACACACAAAATTTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25643446 145 - 121039945 -CTTTGGTTTGTGTTCTTTAAATAAACACACTTGCATAGTTACAATTTTATAAAAATAAAAACCGATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTCTCAATACCTTTAACACCAGAGTTTTCAAGACACACAAAATTTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106534014 146 - 171882078 TTTTTAGTTTATGTTCTTTTAATAAACACACTTACATAGTTACAATTTTGTGAGAATAAAAACCGATTATCTCATGACAAGCGTGCCCAACATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTCAAGACACACAAAAATTT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3120131 141 +  24206276 CTTTTAGTT--TGTTCTTTTAATAAACACACTTACATAGTTACAATTTTGTAAAAATAAAAACAGATTATCTCATGCCAAGCGTGCCCAGTATTTGCACGCTAT-AGTA--TTTAATACTATAGTTTTCAAGACACACATAatttt
i chlSab2.chr29                 I 14 I 346
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122   2 -  61074082 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=3536.000000
s hg38.chr15_KI270850v1_alt        128989 5 +    430880 TAGGC
s panTro4.chr15_GL392289_random    125780 5 -    187897 TAGGC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79970374 5 +  99152023 TAGGC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25643591 5 - 121039945 AAGGC
i nomLeu3.chr6                  C 0 I 1
s macFas5.chr7                  106534160 5 - 171882078 AAGGC
i macFas5.chr7                  C 0 I 1
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122 2 -  61074082 I
e chlSab2.chr29                   3120272 346 +  24206276 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=95796.000000
s hg38.chr15_KI270850v1_alt        128994 83 +    430880 AAAACAGCACCTTGAAACAATCTAATAATTTATTACATTACAGTAGCATCACAGAAGCAGTCAATAATgccactttagacaaa
s panTro4.chr15_GL392289_random    125785 83 -    187897 AAAACAGCACCTTGAAACAATCTAATAATTTATTACATTGCAGTAGCATCACAGAAGCAGTCAATAATGCCACTTTAGACAAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79970379 83 +  99152023 AAAACAGCACCTTGAAACAATTTAATAAGGTATTACATTACAGTAGCATCACAGAAGCAGTCAATAATGCCACTTTAGACAAA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25643597 83 - 121039945 AAAACAGCACTTTGCAACAATTTAATAATTTATTACATTACAGTAGCATCACAGTAGCAGTCAATAATGCCACTTTAGGCAAC
i nomLeu3.chr6                  I 1 C 0
s macFas5.chr7                  106534166 80 - 171882078 AAAACAGCACCTTGCAACAATTTCATAATTTATTACATTATAGTAGCATCAC---AGAAGTCAATAATgccactttagacaaa
i macFas5.chr7                  I 1 C 0
s chlSab2.chr29                   3120618 80 +  24206276 AAAACAACACTTTGCAACAATTTAATAATTTATTACATTACAGTAACATCGC---AGCAGTCAACAATGCCACTTTAGGCAAA
i chlSab2.chr29                 I 346 I 49
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122  2 -  61074082 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=20676.000000
s hg38.chr15_KI270850v1_alt        129077 28 +    430880 aa----tcagtatttccatcatgcattctgtg
s panTro4.chr15_GL392289_random    125868 28 -    187897 AA----TCAGTATTTCCATCATGCATTCTGTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79970462 28 +  99152023 AA----TCAGTATTTCCATTATGCATTCTGTG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25643680 32 - 121039945 AGTGTTTCAGTATTTCCATTATACATTCTGTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106534246 28 - 171882078 ag----tcagtatttccattatacattctgtt
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122  2 -  61074082 I
e chlSab2.chr29                   3120698 49 +  24206276 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=332896.000000
s hg38.chr15_KI270850v1_alt        129105 301 +    430880 tataagaattcataaatcggtaaaagtcgttctaagaaaacttggcaaatacagctttggactggaattggcatttctttCTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAGCTACAGTATTCGTATTTTAAAATGTTTTAAATTATTTTAAGACATTAATTTAACAGTTACATTTTTGAATAG-----TTATTTGAAAGTGACTGTAAGATAAAGTTTTAGAGAA--T--CTATTTTGGATAGGGTTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGATTGTTTTTC
s panTro4.chr15_GL392289_random    125896 300 -    187897 TATAAGAATTCATAAATCGGTAAAAGTCATTCTAAGAAAACTTGGCAAATACAGCTT-GGACTGGAATTGGCATTTCTTTCTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAGCTACAGTATTCGtattttaaaatgttttaaattattttaaGACATTAATATAGCAGTTACATTTTTGAATAG-----TTATTTGAAAGTGACTGTAAGATAAAGTTTTAGAGAA--T--CTATTTTGGATAGGGTTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGATTGCTTTTC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79970490 301 +  99152023 TATAAGAATTCATAAATCAGTAAAAGTCATTCTAGGAAAACTTGGCAAATACAGCTTTGGACTGGAATTGGCATTTCTTTGTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAACTACAGTATTTGtaatttaaaatgttttaaattattttaaGACATTAATATAGCAGTTACATTTTTGAATAG-----TTATTTGAAAGTGACTGTAAGATAAAGTTTTAGAGAA--T--CTATTATGGATAGCATTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGATTGTTTTTC
i ponAbe2.chr15                 C 0 I 139
s nomLeu3.chr6                   25643712 305 - 121039945 TATAAGAATTCACAAATTGGTAAAAGTCATTCTAAGAAAACTTGGCAAATAAAGCTTTGCATTGGAATTGGCATTTCTTTCTCTACTTTTCCTTCCCCCAGTTTCTTTCTTTTAAACTACGGTATTCATATTTTAAAATGTTTTAATTTATTTTAAAAC-TTAAGATAGCAGTTACATTTTTCAATAGTTCTATTCTTTTAAAATGAC--TAAGATAAAGTTTTAGAGAAACT--ATATTATGGATAGGGCTGGTTTACATTTTCACCTTTTCTAAATATCAGCTTTGGTTTTAGAACTGACTTTTTTTC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106534274 297 - 171882078 tacaagaaatcgtaagttggtaaaagtcattctaagaaaacttggcaaataaagctttggactggaattggcatttctGTCTCTACTTTTCCTTCCCCTAGATTCTTGGTTTTACACTACAGTGTTCATATTTTAAAATGTTTTAACTTATTTCAAGATATT---ATAGCAGTTATGTTTTTGAATAG-----TTATTTGAAAGTGACTGTAAGATAAAGTTTTAGAGAA--A--GTATTATGGATAGGGCTGATTTACATTTTCATGTTGTATAAAACTCAGCTTTGGTTTTAGAACTGATTTTTTTC-
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3120747 299 +  24206276 TATAAGAATTCATAAATTGGTAAAAGTCATTCTAAGAAAACTTGGCAAATAAAGCTTTGGACTGGAATTGGCATTTCTTTCTCTACTTTTCCTTCCCCTAGTTTCTTTTTTTTAAACTATAGTATTCATA-TTTAAAATGTTTTAACTTATTTCAAAACATTAAGATAGCAGTTACATTTTTGAATAG-----TTATTTAAAAATGAC--TAACATCAAGTTTTAGAGAA--ACTCTATTATGGATAGGGCTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAATTGATTTTTTTC-
i chlSab2.chr29                 I 49 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122   2 -  61074082 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=4266.000000
s hg38.chr15_KI270850v1_alt        129406 6 +    430880 ATTTCA
s panTro4.chr15_GL392289_random    126196 6 -    187897 ATTTCA
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                   25644017 6 - 121039945 ATTTCT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106534571 6 - 171882078 ATTTCA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3121046 6 +  24206276 ATTTCT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122 2 -  61074082 I
e papAnu2.chr7                  109015416 463 - 162156779 I
e ponAbe2.chr15                  79970791 139 +  99152023 I

a score=623268.000000
s hg38.chr15_KI270850v1_alt        129412 522 +    430880 GGAAAACCTATCAGGTTTAATCTATTACTTTAAAAATAATTATCATATATTGCAGTCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAAATTTATTCAG-TCGAACTCACATTTTAAAATTCTCTCTTTCTG-CTGAACTCTAACCTTCTAATATTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTACTGCAAGAGACTGCATGCACTTTGAAGAAAGACTTGAGTTATTGTCATAGGATTTCCATTCTCTTTAGCTTTTTCTTAAACATATGACAAAATACCTACACAGAGAGTGGTATTTGAGTTAATATAGTACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCACAGGTACCTGATGAACACATTATTGTCAGATTGGTTACAGTTGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATACGTGTCAGGGTAAAAGTGAAG
s panTro4.chr15_GL392289_random    126202 522 -    187897 GGAAAACCTATCAGGTTTAATCTATTACTTTAAAAATAATTATCATATATTGCAGTCTTTAAATAGGTATTTTGATTCTTTACTTCCCACAGAAATTCAAATTTATTCAG-TTGAACTCACATTTTAAAATTCTATCTTTCTG-CTGAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTACTGCAAGAGACTGCGTGCACTTTGAAGAAAGACTTGAGTTATTGTCATAGGATTTCCATCCTCTTTAGCTTTTTCTTAAACATATGACAAAATACCTACACAGAGAGTGGTATTTGAGTTAATATAGTACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCACAGGTGCCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATACGTGTCAGGGTAAAAGTGAAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79970930 522 +  99152023 GGAAAACCTATCAGGTTTAATCAAATACTTTAAAAATAATTATCACATATTGCAGTCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAAATTTATTCAG-TTGAAGTCACATTTTAAAATTCTATGTTTCTG-CTGAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTTAATGAGGTACTGCAAAAGAATGCATGCACTTTGAAGAAAGACTTAAGTTATTGTCATAGGATTTCCATTCTCTTTAGCTTTTTCTTAAACATATGACAAAATACCTACACAAAGAGTGGTATTTGAGTTAATATAGTACATTTATTTTTCAGACTTACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCATAGGTGCCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAATGCTATGTGAAGGTCATTCCTAGTCATTTATATGTGTCAGGGTAAAAGTGAAG
i ponAbe2.chr15                 I 139 C 0
s nomLeu3.chr6                   25644023 514 - 121039945 GGAAAACCTATCAGGTTTAATCAAATACTTTAAAAATGATTAT---ATATTGCAATCTTTAAATATGT-TTTTAGTTCTTTACTTCCTACAGAAATTCAAATTGATTCAG-TTGAACCCACACTTTAAACTTCTATGTTTCTGATTAAACTCTACCCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACTAATACTTGGCTGAATGAGGTATTGCAAAAAACTGCATGCACTTTG----AAGACTTAAGTTATTGTCACAGGATTTCCATTCTATTTAA-TTTTTCTTAAATATATGACAAAATGCCTACACAAAGAGTGGTATTTCAGTTAATATAGTACATTTATTTTCCAGACTGACATTCAGCTTAAATATGCCAGTGCGTGATTTAATCCATAGGTACCTGATGAACACATTATTGTCAGTTTGGTTACAGATGCTAAACGCTATCTGAAGATCATTCCTAGTCATTTATATTTATCAGGGTAAAAGTTGAG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106534577 520 - 171882078 GGGAAACCTATCAGGTTTAATCAAATAGTTTAAAAATAATTATGATATATTGCAGTCTTTAAATTGATATTTTGATTCTTTACTTCCTACAGAAATTCACATTTATTCAGTTTGAACTCACATTTTAAAATTC--TGTTTCTG-CTGAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAACGACTGCATGCACTTTGAAGAAAGACTTAAGTTATTGTCACAGGATTTCCATTCTTTTTAGCTTTTTCTTAAACATATGACAAAATTCCTACACAAAGAGTGGTATTTCAGGTAATATAGCACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCAGAGGTCCCTGATGAACACATTATTGCCAGATAGGTTACAGATGCTAAACACTATCTGAAGGTCATTCCTAGTCATTTATATGTGTCA-GGTAAAAGTGAAG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3121052 513 +  24206276 GGAAAACCTA--AAGTTTAATCAAATACTTTAAAAATGATTATCATATATTACAATCTTTAAATAGGTATTTTGATT-----CTTCCTACAGAAATTCAAATTTATTCAG-TTGAACTCACATTTTAGATTTT-ATGTTTCTG-ATTAACTCTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTAATACTGAATGAGGAAGAGAACAAATAGTTGGCTGAATGAGGTATTGCAAACGACTGCATGCACTTTGAAAAAAGACTTAAGTTATTGTCATAGGATTTCCATTCTTTTTAGCTTTTTCTTAAACATATGACAAAATTCCTACACAAAGAGTGGTATTTCAGTTAATATAGCACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCAGAGGTCTCTGATGAACACATTATTGTCGGATAGGTTACAGATGCTAAACACTATCTGAAGGTCATTCCTCGTCATTTATATGTGTCA-GGTAAAAGTGAAG
i chlSab2.chr29                 C 0 I 1386
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122   2 -  61074082 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=2332.000000
s hg38.chr15_KI270850v1_alt        129934 3 +    430880 CGA
s panTro4.chr15_GL392289_random    126724 3 -    187897 TGA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79971452 3 +  99152023 TGA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25644537 3 - 121039945 TGA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106535097 3 - 171882078 TGA
i macFas5.chr7                  C 0 I 1383
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122 2 -  61074082 I
e chlSab2.chr29                   3121565 1386 +  24206276 I
e papAnu2.chr7                  109015416 463 - 162156779 I

a score=110589.000000
s hg38.chr15_KI270850v1_alt        129937 231 +    430880 TTTGAACTATAAAAATACCTTTGAAATAATTTATCAATGTATTAGATAAGCTCAGTTTCAGAATGATAAACAAAAACTGTTAGACCAAATAACGTGGCTAATTAACAGTGGTACGATTTCTAGCCCGAGGGTTTAAAATGGAGTTAAAGTAAGTGTCTTTAAACTGAACTCAAAGAATGCAAAAGCGGCAAGTTCAG-----ACAAGGCAAGAACAGGACCTTTAGTCCATTTTAA
s panTro4.chr15_GL392289_random    126727 236 -    187897 TTTGAACTATAAAAATACCTTTGAAATAATTTATCAATGTATTAGATAAACTCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAATAATGTGGCTAATTAACAGTGGTACGATTTCTAGCCTGAGGGTTCAAAATGGACTTAAAGTAACTGTCTTTAAACTGAACTCAAAGAATGCAAAAGCAGCAAGTTCAGAAAATAAAAGGCAAGAACAGGACCTTAAGTCCATTTTAA
i panTro4.chr15_GL392289_random C 0 I 464
s ponAbe2.chr15                  79971455 231 +  99152023 TTTGAACTATAAAAATACCTTTGAAATAATTTATCACTGTATTAGATAAACTCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAATAATGTGGCTAATTAACAGTGGTACGATTTCTAGCCTGAGGGCTTAAAATGGACTTAAAGTAACTGTCTTTAAACTGAGCTCAAAGAATTCAAAAGTGGCAAGTTCAG-----AAAACACAAGAACAGGACCTTTAGTCCATTTTAA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25644540 232 - 121039945 TTTGAACTATAAAAATACCTTTGAAATAATTTATCAATGTATTAGGTAAATCCAGTTTCAGAATTATAAAGAAAAACTGTTAGACCAAATAAGGTGGCTAATTGACAGTGGTATGATTTCTAGCCCGAGGGTCTAAATTGGACTTA----AACTATCTTTAAACTGAGCTCAAAGAATGCAAAAGTGGCAAGTTCAGAAAATAAAAGGCCAGAACAAGACTTTAAGTCCATTTTAA
i nomLeu3.chr6                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122   2 -  61074082 I
e chlSab2.chr29                   3121565 1386 +  24206276 I
e papAnu2.chr7                  109015416 463 - 162156779 I
e macFas5.chr7                  106535100 1383 - 171882078 I

a score=338.000000
s hg38.chr15_KI270850v1_alt        130168 2 +    430880 GC
s ponAbe2.chr15                  79971686 2 +  99152023 GC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25644772 2 - 121039945 AC
i nomLeu3.chr6                  C 0 I 468
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122 2 -  61074082 I
e chlSab2.chr29                   3121565 1386 +  24206276 I
e papAnu2.chr7                  109015416 463 - 162156779 I
e macFas5.chr7                  106535100 1383 - 171882078 I
e panTro4.chr15_GL392289_random    126963 464 -    187897 I

a score=1171076.000000
s hg38.chr15_KI270850v1_alt        130170 1595 +    430880 CATAAATATTACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCGTAAAGAACTTTGTGAGGAAATATAACTCT----------------------------GTGATTGTATAGACAC-TTTCCTCATGACACTTTGACAGTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTACGTTGCATAAACTGCTCCTTGATTTTCAAATGTAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACT-AAGTACTCTCACATATATTAGTTTATAATAATGTTTGTTATTATTTTTAAAGTGTTCTCCATTCAAGGAAAAGAAGTAAATTCCTATGTCAGA----------TGGTTGAAGACTAGCTATTAGCCAGAGAGGTCTAGATGGTAAAATCC-ATCTTCTAGCCTCAAATAAGCTCCATGAACACAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTATATGCCTGTTCCAGGGGCATTTAAACTCTTAAAGGATTTCTTCTGATCTTTACTAAATACATTAAGGAGAACGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGGAACATGAACTCTGACTTTAAAATGTATTGTAGATATAAATGCTCTCAGCTAGAAAAGGTTTTCCACATCCACAGTC-ATGATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTCAGGTCATCAAAAAAGAGTACAACTGCCACAGCTCATGAGGCAGTATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGAACTACCGTAGTACAGCGCTCATTCTTGGCACCAGAACAAATGAAACATATTCTATCCTGCACACACCTGCCAAAGCAGGCCACTTTCCTCTTCTGGGAGATTTAAAAACCTCCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAAAGGGGGAAAGGCTGTTTCCAGTGCTCCACCTTTAAACAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--CGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAACAGCAGAACATAAGGAAATTTTATCTGAATTCCGTAATGAATATACAGGCTGTACTAACATTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAAGAACAGTTGTGTGCATACAGTGGGTCTTTGTGTGTTTGAACTCCCACCACATAAGGGCAAACTCGATATGCATGCTAACGTCCTATAATTATCAAATTAA----AAAAATGCTAAAAGATGCCAGAGTGAACATGAGAGAAAGACCCACTCTCATTTAACTTtttacaaataaatttaaattataaattagaaacacaaataaatttaaactataaattagaaacacaaataaatt------------------------taaattataaattagaaacacaaataaatttaaactataaattAGAAACACAAATAAACATAAGTGGCTCTAACATTCAAATGAAGTAAATGAATTGTGTAGGATATTAACCCCTTAAATGttttgttttttttttttttCAATTTCTTGACCC
s panTro4.chr15_GL392289_random    127427 1552 -    187897 CATAAATATTACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCGTAAAGAACTTTGTGAGGAAATATAACTCC----------------------------GTGATTGTATAGACAC-TTTCCTCATGACACTTTGACATTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTAAGTTGCATAAACTGCTCCTTGATTTTCAAATGTAGTATAATACTGTCTACTAAAATTCCTTTTTGTTTCAACTTAAGTACTCTCACATATATTAGTTTATAATAATGTTTGTTATTATTTTTAAAGTCTTTTCCATTCAAGAAAAAGAA-----TGCCTATGTCAGA----------TGGTTGAAGACTAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCC-ATCTTCTAGCTTCAAGTAAGCTCCATGAACATAGAGGAATGCCAGGTGTCACGCAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTAT--GCCTGTTCCAGGGACATTTAAACTCTTAAAGGATTTCTTCTGATCTTTACTAAATACATTAAGGAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGGAACACGAACTCTGACTTTAAAATGTATTGTAGATATAAATGCTCTCAGCTAGAAAAGGTTTTCCACATCCACAGTC-ATGATGGGAGCCTTTCATTCCTCAGAAATAATCCCCTTTTAGGTCATCAAAAAAGAGTACAACTGCCACAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATGCAAATCCTAAGGGAACTACCGTAGTACAGTGCTCATTCTTGGCACCAGAACAAATGAAACATATTCTATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGGGAGATTTAAAAAGCTCCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAAAGGGGGAAAGGCTGTTTCCAGCGCTCCACCTTTAAACAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--CGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAACAGCAGAACATAAGGAAATTTTATTTGAATTCCGTAATGAATATACAGGCTGTACTAACATTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAAGAACAGTTGTGTGCATACAGTGGGTCTTTGTGTGTTTGAACTCCCATCACATAAGGGCAAACTCGATATGCATGCTAGCGTCCTATAATTATCAAATTTA----AAAAATGCTAAAGGATGCCAGAGTGAACATGAGGGAAAGACCCACTCTCATTTAACTTTTTACaaataaatttaaactataaattagaaacacaaataaatttaaactataaattagaaac----------------------------------------------------------ataaatttaaactataaattaGAAACACAAATAAACATAAGTGGCTCTAACATTCAAATGAAGGAAATGAATTGTGTAGGATATTAACCCCTTAAACGTT---TTTGTTTTTTTTTTTAATTTCTTGACCC
i panTro4.chr15_GL392289_random I 464 C 0
s ponAbe2.chr15                  79971688 1634 +  99152023 CATAAATATTACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCGGAAAGAACTTTGTGAGGAAATATAACTCttattatttatatatataaatataatCAAGTGATTGTGTAGACAC-TTTCCTCATGAC------ACATTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTAAGTTGAATAAACTTCTCCTTGATTTTCAAATGTAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACT-AAGTACTCTCACATATATTAGTTTATAATAATGTTTGTTATTATTTTTAAAGTCTTTTCCATTCAAGGAAAAGAAGTAAATTCCTATGTCAGA----------TGCTTGAAGACTAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCC-ATCTTCCAGCCTCAAATAAGCTCCATGAACACAGAGGAATGCCGGGTGTGACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTATATGCCTGTTCGAGGGACATTTAAACTCTTAAAGGATTTCTTCTGATCTTTACTAAATACATTAAGAAGAATGCCAACCAGTGCCCTTTTGTGTGCTGGGACATGTTGTCATGTGATTAAAACAGGGAACATGAACTCTGACTTTAAAATGTATTGTAGATATAAATGCTCTAAGCTAGAAAAGGTTTCCCACATCCACAGTC-ATGATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTCGTCAAAGAAGAGTACAACTGCCACAGCTCATGAGGCAATATCTTCATGCACCCAGAGCACATACAAATCCTAAGGGAACTACCATAGTACAGTGCTCATTCTTGGCGCCGGAACAAATGAAACATATTCTATCCTGCACACACCTGCCGGAGCAGGCCACTTTCCTCTTCTGGGGGATTTAAAAAGCTCCCCGAAATGTTATTACTCCCATCCCCAATACACAGAAAAAGGGGGAAAGGCTGTTTCCAGTGCTCCGCCTTTAAGCAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--TGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAACAGCAGAACATAAGCAAATTTTATCTCAATTCCGTAATGAATATACATGCTGCACTAACATTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAAGCACAGTTGTGTGCATATAGTGGGTCTTTGTGTGTTTGAACTCCCACCACATAAGGGCAAACTCGATATGTATGCTAACGTCCTATAATTATCAAATTAA----AAAAATGCTAAAGGATGGCAGAGTGAACATGAGGGAAAGACCCACTCTCCTTTAACTTTTTACAAATAAATTTAAACTATGaattagaaacacaaataaatttaaactataaattagaaacacaaataaactataaattagaaacacaaataaatgtaaactataaattagaaacacaaataaattcaaactataaattagaaacacaaataaacataaGTGGCTCTAACTTTCAAATGAAGTAAATGAATTGTGTGAGAGATTAACCCCTTAAC-------TTTTTTTTTTTTTTTAATTTCTTGACCA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25645242 1513 - 121039945 CATAAATATGGCACAAAATATGCCTCTAACTGAAACCAAGAGGTATAAAAACATATTTCACTCTTTGTGAAGAACTTTGTGAGGAAACATAACTCT----------------------------GTGATTGTATAGACACTTTTCCTCATAATACTTTGACATTCACAAACAGTAGATTGCACTGCGGCTTGTAAACATTTTAAGTTGCATAAACT--TCCTTGATTTTCATATGTAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACT-AAGTACTGTCACATATATTGGTTTATAATAATGGTTGTTATTATTTTTAAAGTGTTTTCCATTCAAAGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAATGTGGCTGACGAATAGGTATTAGCCAGAGAGGTCTAGATGGTAAAAACCAATCTTCTAGCCTCAAAGAAGCTCCATGAACATAGAGGAAAGCCAAGTGTCACACAGCTTTCCTTCACTCGAATTCCTTCTTGACTAGAGCCTGTAT--GCCTCTTCCAGGGACATTTAAGCTCTTAAAGGATTTCTTACAATCTTTACTAAATACTTTAAGAAGAATGCTAACTAGTGCCCTTTTGTGTACTGGGACATATACTCATGTGATTAAAACAGGTAACATGAACTCTGACTTTACAATGTATTGTAGATATAAATGCTCTAAGCTAGAAAAGGTTTTCCACATCCACAGTCAATGATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTCATCGAGAAAAGGTACAACTGCTGCAGCTCATGATGCAATATCTTCAAGAGCCCAGAGCACATACAAATCCTAAGGGAACTACCATAGTACAGCGCTCATTCTTGGCACCAGAACACATGAAAC--ACTCTATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCCGTGAGATTTAAAAAGCTCCCCAAAATGTTATTATTCCCATCCCCAATACACAGAAAATAGGAGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTCTAAAGGTCAGTACTCACAGTGGCATATTACAAAGTAATAAACGATGCGCACTTGAGGGCAAACCACATATTCAGCTAATGAAGAGCTCACTGTGGTTAGGATTCAATCAAACATAATAGCAGAATATAAGCAAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACATTAAAAAAGCATGGCAGCCTGTTCCAAACTAGTAAGAATAGTTTTGTGCAAATAGTGGGTCTTCGTGTGTTTGAATTCTCACCACCTAAAGGCAAACTCGATATGCACGCTAATGACCTACAATTATCAAATTAAAAACAAAAATGCTAAAGGATGCCAGAGTGAACATCAGGGAAAGACCAACTCTCCCTTAACTTTTTACAAATAAATGTAAATGGTAAATTAGAAACACAAATAAAT------------------------------------------------------------------------------------------------------------------GTGAGTGGCTCTAACATTCAAATGGAGTAAAAGAATTGTGTAGGAGATTAACCCCATCAC--TT---TTTGTTGTTGTTTTAAATTTCTTGACCA
i nomLeu3.chr6                  I 468 C 0
s papAnu2.chr7                  109015879 1459 - 162156779 CATAAATATGGCACAAAATATGCCTCTAACTGAAACCGAGAggtataaaaacatatttcactCTTCGTAAAGAACTTTGTGAGGaaatataactct----------------------------gtgattgTATAGATACTTTTACTCA-AATACTGTGACATTCACCAACAGTAGATTGCATTGcagtttgtaaacattttaagttGCATAAACTTCACCTTGATTTTCAAATGCAGTATAATACTGTCCACTAAAACTGCTTTTTGTTTCGATT-AAGTACTGTCACATATATTAGTTTATAAAAatggttgttattatttttaaagtgttttccattcaaggaaaagaagtaaaTTCCTATGGCAGATTAACCAATGTGGCTGAAGAATAGGTATTAGCCAGAGAGGTCTACATGGTAAAATCA-ATCTTCTAGCCTCAAAGAAGCTCCGTGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTAT--GCCTGTTCCAGGGACATTTAAACTCTGAAAGGATTTCTTATGATCTTCACTAAATACACTAAGAAGAATGCCAAGCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGTAACATGAACtctgactttaaaatgtattgtagATATAAATGCTCTAAGCTAGAAAAGGTTTTCCACATCCACAGTCCATGATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTCATTGAGAAAGAGTCCAACTGCTACAGCTCATGCTGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGAACTACCATAGTACCGCGCTCATTCCTGGCACCAGAACAAATGAAACACACTCTATCCTGCACACACCTGCCAGAGCAGGccactttcctcttctgtgagaTTTAAAAAGCTCCCCAAAGTGTTATCACTCCCATCCCCAATACACAGAAAATAGGGGAAAGGCTGTTTCCAGTTCTTGGCCTTTAAACAACTCTAAATGTCAGTACTCACAGGGGCATATTACAAAGTAAGAAAC--TGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAATAGCAGAACATAAGCCAATTTTATCTGAATTCTGTAATGAATATACATGCTACAATAACATTGAAAAAGCATGGCAGCCTATTCCAAACCAGTAAGAATAGTTTTGTGCAAATAGCGGGTCTTTGTGTGTTTGGACTCCCACCATGTAAGGGCAAACTCGATATGTGAGCTAATGACCTACAattatcaaattaaaaacaaaaatgctaaagG--------------------------------------TAACTTTCTACAAACAAATTTAAACTGTAAAttagaaacataaataaac------------------------------------------------------------------------------------------------------------------atgAGGGGCTCTAACATTCCAATGAAGTAAATGAATTGTGTagggg---------------------attcttttttttttaaacttcttgacCA
i papAnu2.chr7                  I 463 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823122    2 -  61074082 I
e chlSab2.chr29                   3121565 1386 +  24206276 I
e macFas5.chr7                  106535100 1383 - 171882078 I

a score=288761.000000
s hg38.chr15_KI270850v1_alt        131765 389 +    430880 GCTCTTAGATGATGGTGATGTTTAGCTCCCTGTTCTCCGCAGCCCG--AAAAGAATGGCATGCAGCCTCTTCTGCTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCACTCAAGCCTGGGTGCTCCTGGGGAGTCCTGCATTAGAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCATGGGGGA---GAACCCTCCCTGTCCTGTCCCGGTGCAGCCTCCATGCTATCAGTG------AGGCTCAGCTCACTAAGATCT-------TCAGAGAGAGGGA-GGGGGTGGGAATCTGGGCACAGTGCGAGCCTCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGGGCTCTACTCACCACCCTGCTTGTCCGCACATCCAAGCTCCTTGTGGGACTGGGG
s panTro4.chr15_GL392289_random    128979 389 -    187897 GCTCTTAGATGATGGTGATGTTTAGCTCTCTGTTCTCGGCGGCCCG--AAAAGAATGGCATGCAGCCTCTCCTGCTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCACTCAAGCCTGGGTGCTCCTGGGGAGTCCTGCATTAGAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCATGGGGGA---GAACCCTCCCTGTCCTCTCCCGGTGCAGCCTCCATGCTATCAGTG------AGGCTCAGCTCACTAAGATCT-------TCAGAGAGAGGGAGGGGGGTGGGAATCTGAGCACAGTGCGAGCCTCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGGGCTCTACTCACCACCCTGCTTGTCCGCACACCCAAGCTCC-TGTGGGACTGGGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79973322 381 +  99152023 GCTCTTAGATGATGGTGATGTTTATCTCCCTGTTCTCGGCAGCCCG--AAAAGAATGTCATGCAGCCTCTCCTGCTCCTCGTGCCGCCTCTCCTGTACCAACAGCTTCTCCACCCAAGCCTGGGTGCTCCTGGGGAGTCCTGTGGTAGAGGAAGCAGCTGCTGGATCTGCTGCGCAGTGGGGTTCTCAT-GGGGA---GAACCCTCCCTGTCCTCTCCTGGTGCAGCCTCCACGCTATCAGTG------AGGCTCACCTCACAAAGATCT-------TCGGGGT-------GGGGGTGGGAATCTGAGCACAGTGCGAGCCTCCCTTGCTCCTGCCTGCCCACCCCACCTGAGGGCTCTACTCACCACCCTGCTTGTCCGCACACCCAAGTTCC-TGTGGGATCGGGG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25646755 347 - 121039945 GCTCTTAGATGATGATGATGTTTATCTCCCTGTTCTTGGCTGCCCGGTAAAAGAATGGCATGCAG--------------------------------------GGTTTGCTAGGCAAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGCTGCACGATCTGCTGTGCAGTGGGGTTGTCAT-GGGGA---GAACCCTCCCTGGCCGCTCCTGGTGCAGGCTCCACGCTGTTGTCC------AGGCTCACCTCATAAAAATCT-------TTGGAGAGAA----GGAGGCGGGGGTCTGAGCACAATGCAAACCTCTCCTGCTCCTGCCTGCCCACCCCACCCGAGGGCTCTACTCACCATCCTGCTCACCGGCAGCCCCAAGTTCC-TGGGGGGCTGGGG
i nomLeu3.chr6                  C 0 C 0
s papAnu2.chr7                  109017338 329 - 162156779 GCTctcagatgatgatgatgtttaTCTCCCTGTTCTTGGCTGCCCGGTAAAAGAATGGCACGCAG--------------------------------------GGTTTGCTGGCCAAGCCTGGGTGCTCCTGGGT-GTCCTGCGTTACAGGAAGCAGCTGCAGGATCTTCAGTGCAGTGGGGCTGTCAC-GGGGA---GAACCCTCCCTGGCCTGTCCCGGTGCAGGCTTCATGTTGT------------------------GAAAATCT-------TTGGAGAGAG----GGAGGCGGGGCTCTGAGTACACTGCGAGCCTCCCCTGCTCCGGCCTGCCCGCCCCGCCTGAGGACTCTACTCACCACCCTGCTCCTCCACAGCCCCAAGTTCC-TGGGGGGCTGGGG
i papAnu2.chr7                  C 0 C 0
s canFam3.chr9                    5823124 355 -  61074082 GCTCTTAGATCACCAGGATCTTCACCTCGTCATTGTCATCAGCCCGGTAGAAGAAGGGGACGCAG--------------------------------------GGATTCTTGCTTAAACCTAGGTATGGCTGGGG-ATTCTGCATCTCCTGCAGAAGCTGCATGATTTGCTGTGCAGTGGGGTTCTCAG-GGGCACTGTGGCCTGGTAGGGCCTCTCCCTGAGGAGGTGCCACATTATCATTGTCAGCCAGGCTCACCTCTCGAAGATCTTTGTGGGTCAGGGAGAGAGAAAGAAACAGGGCTCTGAGTGCTGTGCGAGCTCTCCCCGC---------CCCACCCACCCTGAGGGCTCTACTCACCACCCTGGCCATTGGCAGCACCAAGCTCT-T---GGGCTGGGG
i canFam3.chr9                  I 2 I 1663
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                   3121565 1386 +  24206276 I
e macFas5.chr7                  106535100 1383 - 171882078 I

a score=1187.000000
s hg38.chr15_KI270850v1_alt        132154 2 +    430880 CT
s panTro4.chr15_GL392289_random    129368 2 -    187897 CT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79973703 2 +  99152023 CT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25647102 2 - 121039945 CC
i nomLeu3.chr6                  C 0 I 994
s papAnu2.chr7                  109017667 2 - 162156779 CC
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823479 1663 -  61074082 I
e chlSab2.chr29                   3121565 1386 +  24206276 I
e macFas5.chr7                  106535100 1383 - 171882078 I

a score=1000.000000
s hg38.chr15_KI270850v1_alt        132156 1 +    430880 C
s panTro4.chr15_GL392289_random    129370 1 -    187897 C
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79973705 1 +  99152023 C
i ponAbe2.chr15                 C 0 I 13
s nomLeu3.chr6                   25648098 1 - 121039945 C
i nomLeu3.chr6                  I 994 C 0
s papAnu2.chr7                  109017669 1 - 162156779 C
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5823479 1663 -  61074082 I
e chlSab2.chr29                   3121565 1386 +  24206276 I
e macFas5.chr7                  106535100 1383 - 171882078 I

a score=3850.000000
s hg38.chr15_KI270850v1_alt        132157 2 +    430880 CA
s panTro4.chr15_GL392289_random    129371 2 -    187897 CA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79973719 2 +  99152023 CA
i ponAbe2.chr15                 I 13 C 0
s nomLeu3.chr6                   25648099 2 - 121039945 CA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106536483 2 - 171882078 CA
i macFas5.chr7                  I 1383 C 0
s papAnu2.chr7                  109017670 2 - 162156779 CT
i papAnu2.chr7                  C 0 I 1898
s chlSab2.chr29                   3122951 2 +  24206276 CA
i chlSab2.chr29                 I 1386 C 0
s canFam3.chr9                    5825142 2 -  61074082 CA
i canFam3.chr9                  I 1663 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I

a score=342598.000000
s hg38.chr15_KI270850v1_alt        132159 177 +    430880 GGTACTGGTCTGG---CTGCTGCTGCAGACTCGGAGCCTCTTGGCTCTTCAGCTCCACCTGCCGGAAGACCCTGGGCATGAGGACATGTGGTGGCTGGCTTCCAGATTCCTGGCCCATTAATAGGGTAGCGAGGGCACTGTGGGGCTCTGTGGCCTGCCCAGGCCCCTGGC-CCCTTGCTC
s panTro4.chr15_GL392289_random    129373 177 -    187897 GGTACTGGTCTGG---CTGCTGCTGCAGACTCGGAGCCTCTTGGCTCTTCAGCTCCACCTGCCGGAAGACCCTGGGCATGAGGACATGTGGTGGCTGGCTTCCAGATTCCTGGCCCATTAATAGGGTAGCGAGGGCACTGTGGGGCTCTGTGGCCTGCCCAGGCCCCTGGC-CCCTTGCTC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79973721 177 +  99152023 GGTACTGGTCTGG---CTGCTGCTGCAGACTGGGAGCCTCTTGGCTCTTCAGCTCCACCTGCCGGAAGACCCTGGGCATGAGGGCATGTGGTGGCTGGCTTCCAGATTCCTGGCCCATTAATAGTGTAGCGAGGGCACTGTGGGGCTCTGTGGCCTGCCCAGGCCCCTGGC-CCCTTGCTC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25648101 177 - 121039945 GGTACTAGTCTCA---CTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGCATGAGGGCACATGGTGGCTGGCTTCCAGATTCTGGGACCATTAATAGGGTAGCGAGGGCACTGTGGGGCTCTGTCACCTGCCCAGGACCCTGGT-CCCTTGCTC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106536485 177 - 171882078 GGTACTGGTCTCC---CTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGATGATCCTGGGCATGAGGGCATTTACTAGCTGGCTTCCGGATTCCTGGCCCATTAATAGGGTAGCAAGGGCACTGTGGTGCTCTGTGGCCTACCCAGGCCCCTGGT-CCCTTGCTC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  109019570 180 - 162156779 GGTACTAGTctcactgctgctgctgcagacTCTGAGACTCTTGGCTCTTCAGCTGTATCTGCAGGAAGACCCTGGGCATGAGGGCGTGTGGTGGTTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGTGAGGGCACGGTGGGGATCTGTCACCTGCCCGGGACCCTGGC-CCCTTGTTC
i papAnu2.chr7                  I 1898 n 1898
s chlSab2.chr29                   3122953 176 +  24206276 GGTACTGGTCTCC---CTGCTGCTGCAGACTCTGAGCC-CCTGGCTCTTCAGCTCCACCTGCAGGAAGATCCTGGGCATGAGGGCATTTACTAGCTGGCTTCCGGATTCCTGGCCCATTAATAGGGTAGCAAGGGCACTGTGGTGCTCTGTGGCCTGCCCAGGCCCCTGGT-CCCTTGCTC
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5825144 147 -  61074082 TGTACTGGTCCCG---CTGCTGCTGTAGATTCTGAGCCTCCTGGCTCTTCAGCTCCACCTGTGGGAAGACCCAGGGACTAAG-----------GCTGGCACCC--------------------GTGCTGAGAGGAAAGCGGGAGGCTCTGCGGCCCGCCCAGGCCCCTGGCTTCCTCGCTC
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I

a score=334167.000000
s hg38.chr15_KI270850v1_alt        132336 200 +    430880 -CAGGCCTAAGAGA--CTGTCTCCCTTGCCTAGAACCCCATGCCTCCTTCCCTAGCATCAAATCTCACGTCCTTTTTCCCAGCATGTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGGCGGAGCCAACCaccatctgctaagtgtg--ctacatgcctaatg-tttccacgtat-tatctcatttaatcctcagcacctctgcaa
s panTro4.chr15_GL392289_random    129550 200 -    187897 -CAGGCCTAAGAGA--CTGGCTCCCTTGCCTAGAACCCCATGCCTCCTTCCCTAGCATCAAATCTCACGTCCTTTCTCCCAGCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGGCGGAGCCAACCaccatctgctaagtgtg--ctacatgcctaatg-tttccacgtat-tatctcatttaatcctcagcacctctgcaa
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79973898 202 +  99152023 -TAGGCCTAAGAGACTCTGCCTCCCTTGCCTAGAAGCCCATGCCTCCTTCCCCAGCCTCAAATCTCACGTCCTTTTTCCCAGCATTTAAACCGTAGGCCACAGACTGGTGGAAAAGCAGGGGGAGCCAAtcaccatctgctaagtgtg--ctacatgcctaatg-tttccacgtat-catctcatttaatcctcagcacctctgcaa
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25648278 201 - 121039945 -CAGGCCTAAGAGA--CTTCCTCCCTTGCCTAGAACCCCATACCTCCCTCCCCAGCCTCAAATCTCACGTCCTTCTTCCCACCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAAGGAGCCaaccaccatctgctaagtgtg--ctacatgcctaatgctttccatgtat-tctctcattcaatcctcagcgcctctgcaa
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106536662 199 - 171882078 -CAGGCCTAAGAGA--CTGCCTCCTTTGCCTGGAACCCAGTGCATCCTTCCCCAGCCTCAAATCTCACATGCTTTTCCCTATCATTTAAACTGTAGGCCACAGACTGGTGG-AAAACAGGGGGAGCCaaccaccatctgctaagtgta--ctacatgcctactc-tttccgtgtgt-tatctcatttaatcctcagcacctctgcaa
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102434209 199 - 162156779 -caggcctaagtGA--CTGCCTCCCTTGCCTGGAACCCCAtgcctctttcctcagcctcaaATCTCACATCCTCTTCTC-ACGATTTAAACTGTAGGCCACAGACTGGTGGCAAAGCAGAGGGAGCCAACCACCATCTGCTGAGTGTG--CTACATGCCTAATG-TTTCCacctat-tatctcatttaatcctcaaaccCTCTGCAA
i papAnu2.chr7                  n 1898 C 0
s chlSab2.chr29                   3123129 196 +  24206276 -CAGGCCTAAGAGA--CTGCCTCCCTTGCCTGGAACCCAATGCATCCTTCCCCAGCCTCAAATCTCACATGCTTTTCCCTATCATTTAAACTGTAGGCCACAGACTGGTGG-AAAAC--GGGGAGCCAACCGCCATCtgccaagtgta--ctacatgcctaatg-tttccacatat-tatctcatttaatcctcag-acctctacaa
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5825291 184 -  61074082 TAGGACTTCAGTGA--CTGCCCCTATATCCAGGGACCCACACTTCCCTTACCCTTCCTCATGCCTCATGACCACCTTCT----ATTTTCACTTTA------------GTGGAAAAGCAAAGTGCGCCCATGGACATCTG---AGTGCGCCCTGAATGCCTCACA--Ctacaggcatgcttctcatttaattcttgacacctgggcag
i canFam3.chr9                  C 0 I 297
e calJac3.chr10                 113866255 79192 - 132174527 I

a score=162382.000000
s hg38.chr15_KI270850v1_alt        132536 111 +    430880 ggaaaaggctaacttccttttgaagttaaagaaacagagacttagagatgcaaagtAGTTGAATTATGACCAGTGGAACCGAGGCCGGAATCCAGTTTGAATCTAAGGAG--T
s panTro4.chr15_GL392289_random    129750 111 -    187897 ggaaaaggctaacttccttttgaagttaaagaaacagagacttagagatgcaaagtagttGAATTATGACCAGTGGAACCGAGGCCGGAATCCAGTTTGAATCTAAGGAG--T
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79974100 111 +  99152023 ggaaaaggctaacttccttttgaagttaaagaaacagagacttagagatgcaaagtAGTTGAATTATGACCGGTGGAACCGAGGCTGGAATCCAGTTTCAATCTAAGGAG--T
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25648479 111 - 121039945 ggaaaatgctaacttccttttgaagttacagaaacagagactaagagaTGAACAGTAGTTGAATGGTGACCAGCGGAACCCAGGCCAGAATCCAGTTTGAATCTAAGGAG--G
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106536861 110 - 171882078 agaaaatgctaacttccttttgaagttaaagaaacagagacttagaaatgcaaagtAGTTGAATGATAACCAGTAGAACTGAGTCCAGAAACCAGTTTGAATCTAAGGAA---
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102434408 111 - 162156779 GGAAAAAGCTCACTTCctttttaagtgaaagaaaccaagacTTAGAGATGCAAGGTAGTTCAATGGTGAGCAGTGGAGCCGAGGTTGGAATTCAGGTTGAATCTAAGGAGG--
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3123325 111 +  24206276 ggaaaatgctaacttccatttgaagttaaagaaacagacacttaaaaatgcaaagtAGTTGAATGATAACCAGTAGAACCGAGTCCGGAAACCAGTTTGAGTCTAAGGAG-T-
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5825475 297 -  61074082 I

a score=356746.000000
s hg38.chr15_KI270850v1_alt        132647 328 +    430880 Cttttttgtttttc-----tgttttgttttgttttgagagagtgtcactctgtgtcccaggctgcagtgcagtggtgcaatctcagctcactgcaaccttcatctcccgggctcaagtgattctcgtgtctcagcctcctgagtagctgggattacaggcatgcaccaccaggcccggcta---attattattattattttt-aattttagtagagatgagctttcaccatgttggccatgttggtctcaaactcctgacctcaagtgattgtcctgcctcagcctcccaaagtgctgggattgcaggcgtgagccaccacacccgacATAAGGAGC
s panTro4.chr15_GL392289_random    129861 331 -    187897 Cttttttgtttttc-----tgttttgttttgttttgagagagtgtcactctgtgtcccaggctggagtgcagtggtgcaatctcagctcactgcaaccttcacctcccgggctcaagtgattctcgtgtctcagcctcccgagtagctgggattacaggcatgcaccaccaggcccggctaattattattattattattttt-aagtttagtagagatgagctttcaccatgttggccatgttggtctcaaactcctgacctcaagtgattgtcctgcctcagactcccaaagtgctgggattgcaggcgtgagccaccacacccgacATAAGGAGC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79974211 325 +  99152023 CTTTTTTGtttttctgttttgttttgttttgttttgagacagtgtcactc--tgtcccaggctggagtgcagtggtgcaatctcagcccactgcaaccttcacctcccgggctcaagtgattctcgtgtctcagcctcctgagtagctgggactacaggaatgcaccaccagacccggc---------ttattttttttttt-aattttagtagagatgaggtttcgccacgttggccacgctggtctcaaactcctgacctcaagtgattctcctgcttcagcctcccaaagtgctgggattacaggcgtgagccaccacacccgacACAAGGAGC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25648590 312 - 121039945 C------------------ttttttgttttgttttgggacagtgtcactctgtggcccaggctggagtgcagtggtgcaatctcagctcactgcaacctccaccacctgggctcaagcgattctcatgcctcagcctcctgagtagctgggattacaggcatgccccaccatgcctggcta------attttttgttgttgt-aattttagtagagatgaggtttcgccatgttggctaggctggtctcaaactcctgacctcaagtgattctcctgcctcagcctcccaaagtgctgggattacaggcacgagccaccgtgcccggcATAAGGAGC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106536971 326 - 171882078 Ctttttggtttttg-----tgttttgttttgttttgagacagtgtcactctgtgtcccgggctggagtccagtggtgtgatctcagctcactgcaacctctacctcccaggctcaaatgattctcgtgtctcagcctcctgagtagctgggatgataggcatgcaccaccaagcctaggta------attattttttttttgaaattttagtagagatgaggttttgccatgtcagccaggctggtctcaaactcctgacctcaagtgattctcctgcctcagcctcccaaagtggtgggactacaggcgtcagccaccacacccgacATAAGGAGC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3123436 320 +  24206276 Ctttttggtttttg----------cgttttgttttgagacagtgtcactctgtgtcccgggctggagtccagtgatgcgatctcagctcactgcaacctctacctcccaggctcaaatgattctcgtgtgtcagcctcctgagtagctgggatgacaggcatgcaccaccaggcctaggta------attatattttttttgaaattttagtagagatgaggttttgccatgtcagtcaggctggtctcaaactcctgacctcaagtgattctcctgcttcggcctcccaaagtggt-ggactacaggcgttagccaccacacccAACATAAGGAGC
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5825475 297 -  61074082 I
e papAnu2.chr7                  102434519   0 - 162156779 C

a score=13736.000000
s hg38.chr15_KI270850v1_alt        132975 9 +    430880 CTCTTATAC
s panTro4.chr15_GL392289_random    130192 9 -    187897 CTCTTATAC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79974536 9 +  99152023 CTCTTATAT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25648902 9 - 121039945 CTGTTGTAC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106537297 9 - 171882078 CTCTTATAC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102434519 9 - 162156779 CTCTTATAA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3123756 9 +  24206276 CTCTTATAC
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5825475 297 -  61074082 I

a score=448483.000000
s hg38.chr15_KI270850v1_alt        132984 281 +    430880 CACTGTCTCTTCCTCTGTGATTGGGGGGCTCCATGCCTCTAGCTGGGATGATGATGATGTCCAGACCTGGGAGGGCCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAGTC----------ATAGGACTGCCCCGGAGGGTGCTGGGGTCACCTG----TCCCCAGGCTGCAGCTGCCTGTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGT--GCCCGCCTCCCACATCTTCTTGGATGGGTCGGAG-----GTTACAGTCTCTTTCAGCTCACCCGACTTCTC---C------------------------
s panTro4.chr15_GL392289_random    130201 278 -    187897 CACTGTCTCTTCCTCTGTGATTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATGTCCAGACCTGGGAGGACCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAGTC----------ATAGGACTGCCCCGGAGGGTGCTGGGGTCACCTG----TCCCCAGGCTGCAGCTGCCTGTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGT--GCCCGCCTCCCACATCTTCTTGGATGGGTCGGAG-----GTTACAGTCTCTTTCAGCTCACCCGACTTCTT---C------------------------
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79974545 278 +  99152023 CACTGTCTCTTCCTCTGTGATTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAGTC----------ATGGGACTGCCCTGGAGGGTGCTGTGGTCATCTG----CCCCCAGGCTGCAGCTGCCTCTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGT--GCCTGCCTCCCAGATCTTCTTGGATGGGTCGGAG-----GTTACCGTCTCTTTCAGCTCACCTGGCTTCTT---C------------------------
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25648911 278 - 121039945 CACTGTCTCTTCCCCTATGATTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATGTCCAGATCTGAGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACATTC----------ATAGGGCTGCCCTGGAGGGTGCTGGGGTCACCTG----CCCCCCAGCTAGAGCTGCCTTTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGT--GCCTGCCTCCCAGCCCTTCTTGGATGG---GGTG-----GTTACCGTCTCCTTCACCTCGTCTAGCTTCTCCTGC------------------------
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106537306 267 - 171882078 CACTGTCTCTTCCCCTGTGACTGGGG-GCTCCATGGCTCTAGCTGG---GATGACGATATCCAGACCTGGGGGGAGCCCAGGGCTCCCCACCTCTAAAAGTCAGAGGGAAAGATGCAAGAAACAGTA----------ATAGGACTGCC----------CCAGGGTCACCTG----CTCGCAGGCTGCAGCTGCCTCTGGCCTGGCACCTCCCTTCCCCAGAGGCTGGT--GCCCGCCTCCCAGCCCTTCTTGGATGGGTCAGAG-----GTTACCGTGTCTTTCAGCTCGCCCAGCTTCTT---C------------------------
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102434528 279 - 162156779 TACTGTCTCTTTCCTTATGACTGGGGAGCTCCACGCCTCTAGCTGG---GATGATGACGTTCAGACCTGGGAGGAATCCAGGGCTACCCACCTCTAAAATTCGGAGGGCAAGAAGCAAGAAACAGTC----------ACAGCACTGTCCTGGAGGCTGCTGGGGTcacctgt---cccccaggctggagctgccTCTGGCCTCACACCTCCCTTCCCCAGAGACTGGT--GCCCGCCTCCTAGCCCTTATTGGATGGGGCGGGG-----GTTACTATCTGCTTCGGCTTGGCCAGCTGCTC---C------------------------
i papAnu2.chr7                  C 0 I 97
s chlSab2.chr29                   3123765 268 +  24206276 CACTGTCTCTTCCACTGTGACTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATATCCAGAACTGGGGGGAGCCCAGGGCTCCCCACCTCTAAAAGTCAGAGGGGAAGATGCAAGAAACAGTA----------ATAGGACTGCC----------CCAGGGTCACCTG----CTCACAGGATGCAGCTGCCTCTGGCCTGGCCCCTCCTTTCCCCAGAGGCTGGT--GCCCGCCTCCCATCCCTTCTTGGATGGGTCAGAG-----GTTACCGTGTCTTTCAGCTCGCCCAGCGTTTT---C------------------------
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5825772 304 -  61074082 caccatctcttgaccT---CGTTAGGGGCCTGAGCTCTCTAGCCAG---GACGAGGACCTTCAG------------CCCAGGGATACCCACTCTGTAGAGTCAGACAGCTGGGAGTGACAAGGGGCCTGCACCACAGGCAGGATTG----GAAGGACTCTGGAGTCAGGTGTCCCCCCACAGGCTGGAGCTGCACCATCCTGGGCAACCTCCCACCCTCCGAGCAGGTAGGTTTGTCCTCCAGGCTTCCTCAGCTGGTGTGGGGGGTAAGTTACCATCTCCTTTAGCTCTCCCAGCTTCTC---CTGCAGCTGGCCCAGCTTCTTGGCC
i canFam3.chr9                  I 297 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I

a score=403142.000000
s hg38.chr15_KI270850v1_alt        133265 277 +    430880 AGCTCCTTT---ACTTGCTGCTCCAACTGCAGTGTGCT---------CTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTAGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAAT-ATC-CCCTCTCTCCCACAGCCATCAGAGCGGG---------GCTCT--GGCTCACA-GATGCCTTTAGAAGTACCATTT---CATGTGAAGGCTACA--ATGccccattttacaggtggggaaac-aaaggccttgaggg
s panTro4.chr15_GL392289_random    130479 277 -    187897 AGCTCCTTT---ACTTGCTGCTCCGGCTGCAGTGTGCT---------CTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTAGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAAT-ATC-CCCTCTCTCCCACAGCCATCAGAGCAGG---------GCTCT--GGCTCACA-GATGCCTTTAGAAGTACCATTT---CATGTGAAGGCTACA--ATGccccattttacaggtggggaaac-aaaggccttgaggg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79974823 279 +  99152023 AGCTCCTTT---ACTTGCTGCTCTAACTGCAGTGTGCT---------CTTGTTCTCGTTGTTCTGGACAGAGAGAAGTAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGGAACTGGGAAGGGTGGAGGCAGGTTAGAAAAATCATC-CCCTCTCTCCCACAGCCATCAGAGCAGG---------GCTCT--GGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAAGGCTACA--ATGCCCCATTTTACAGGTGGGGAAACAAAAGGCCTTGAGGG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25649189 287 - 121039945 AGCTCCTTT---ACTCCCTGCTCCGAATGCACTGCGCT---------CTTGTTCTCGTTGTTCTGCACAGAGAGAAGTAATCAGTGGCCACCCACTGCAGCTGGAGACACCAGAACTGGGTGTCTGCCTCCCATGTCACCGGGAAGGGTGGAGACAGGTTAGAAAAATCATC-CCTTCTCCCCCACAGCCATCAGACGAGGGCCTGATGAGCTGT--AGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAGGGCTACa--ctgccccattttacaggtggggaaac-aaaggcctggaggg
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106537573 278 - 171882078 AGCTCCTTT---ACTTGCGGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAGAGAAGCAATCATTGGCCACCCACTATAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATAGCACCGGGAAGGGTGGAGGCAGGTAAGAAAAATCATC-CCCTCTCTCCCACAGCCATCAGAGCAGG---------GCTCT--GGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAGGGCTACA--ATGccccattttacaggtggggaaac-aaaggcctggaggg
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124033 277 +  24206276 AGCTCCTTT---ACTTGCGGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAGAGAAGCAATCATTGGCCACCCACTATAGCTGGAGACCCTAGAATTTGGTGTCTGCCTGCCATGGCACCGCGAAGGGTGGAAGCAGGTTAGAAAAATCAT--CCCTCTCTCCCACAGCCATCAGAGCAGG---------GCTCT--GGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAGGGCTACA--ATGccccattttacaggtggggaaac-aaaggcctggaggg
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5826076 275 -  61074082 AGCTCCTTCTTGACATGCTGCTCCGACTGCAGTGCGGTAGTAATCTCCATGTTCTCGTTGGACTGGAGAGAGAAGAGGAGTCAGTGGCCACC-----------------CCAGAACATGGAGTCTACCTCCCACAGTGCAGGGAAGAGTGGAGGCAGGT-------GTCCTCACCACCTCTGCCCCACTCATCTCAGCAGG---------GCTCTCCGGCTCACAGGGTGCCTTCAAGGGCACCATTTTCACATTGGGTGCATACACCCTtcccccatttacacgtggggagac-aaaggcctagaggg
i canFam3.chr9                  C 0 I 45
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807  97 - 162156779 I

a score=35248.000000
s hg38.chr15_KI270850v1_alt        133542 28 +    430880 ctaggGAAGAGGGCAGCCTCCCCAGGTG
s panTro4.chr15_GL392289_random    130756 28 -    187897 ttaggGAAGAGGGCAGCCTCCCCAGGTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975102 28 +  99152023 CTAGGGAAGAGGGCAGCCTCCCCAGGTG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25649476 28 - 121039945 ACAGGGATGAGGGCAGGCTCCCCAGGTG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106537851 28 - 171882078 ctaggGAAGAGGGCAGACTCCCCAGGTG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124310 28 +  24206276 CTAGGGAAGAGGGCAGGCTCCCCAGGTG
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826351 45 -  61074082 I
e papAnu2.chr7                  102434807 97 - 162156779 I

a score=66253.000000
s hg38.chr15_KI270850v1_alt        133570 52 +    430880 GGGCAACGTACCAGCTCCTCGAAGCCGCTGCGTGGCTCGGCCCGCTGCTCGT-----------------------
s panTro4.chr15_GL392289_random    130784 52 -    187897 GGGCAACGCACCAGCTCCTCGAAGCCGCTGCGTGGCTCGGCCCGCTGCTCGT-----------------------
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975130 52 +  99152023 GGGCAACGCACCAACTCCTCAAAGCCACTGCATGGCTCGGCCTGCTGCTCGT-----------------------
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25649504 52 - 121039945 GGGCAACCCACCAGATCCTCGAAGCCGCGCTGTGGCTCGGCCAGCTGCTTGT-----------------------
i nomLeu3.chr6                  C 0 I 26
s macFas5.chr7                  106537879 52 - 171882078 GGGGAACCCACCAGCTCCTCGAAGCTGCTGTGTGGCTCCGCCTGCTGCTCGT-----------------------
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124338 52 +  24206276 GGGCAACCCACCAGTTCCTGGAAGCTGCTGTGTGGCTCCGCCTGCTGCTCGT-----------------------
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5826396 75 -  61074082 GGGCTACACACCAGCTTGACGAAGCCGTTCTGCAGCTCAACCAGCTGCTCCTTGAGCTCGCGGTTCTGGGAGAGC
i canFam3.chr9                  I 45 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807 97 - 162156779 I

a score=26619.000000
s hg38.chr15_KI270850v1_alt        133622  80 +    430880 ------------------ACAGGGCTTCCCACCccagctccagcatcctctccagctcc----cgcagcctctccagctcccg--cagcctctccagctccc------------------------------------------------------------------------------------------------------------------------------------------gc
s panTro4.chr15_GL392289_random    130836  62 -    187897 ------------------AGAGGGCTTCCCACCCCAGCTCCAGCAT----------------------CCTCTCCAGCTCCCG--CAGCCTCTCCAGCTCCT------------------------------------------------------------------------------------------------------------------------------------------GC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975182  62 +  99152023 ------------------AGAGGGCTTCCCATCCCAGCTCCAGCAT----------------------CCTCTCCAGCTCCCG--CAGCCTCTCCAGCTCCC------------------------------------------------------------------------------------------------------------------------------------------AC
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106537931 200 - 171882078 ------------------AGAGGGCTTCCCACCCCAGCTCCAGCAT----------------------CCTCTCCAGCTCCCG--CAGTGTCTCCTGCTCCCACAGCCTCTGATCCTGCTCCCGCAGCCTCTCCTGTTCCAGCATCTCCTCCACTTGGTCCAGCAGCTGCTCCTCCTCCAGCAGCCTCTTCTGCTCCTCCTATCGCCTCTCCCGTTCCAAAAGCTTCTCCACCTGCTCCAGC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124390  62 +  24206276 ------------------AGAGGGCTTCCCACCCCAGCTCCAGCAT----------------------CCTCTCCAGCTCCCG--CAGCCTCTCCAGCTCCC------------------------------------------------------------------------------------------------------------------------------------------GC
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5826471 102 -  61074082 GCACGGCTGATGGTGGTGCGATCGCTCTGCATGCT--CTCCAGAATCTGCTTGCGTTCCTCTGCCTGCTCCCCCCAGCACTCGGCTGCCCGCTCCAGCTCCA------------------------------------------------------------------------------------------------------------------------------------------GC
i canFam3.chr9                  C 0 I 2
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807  97 - 162156779 I
e nomLeu3.chr6                   25649556  26 - 121039945 I

a score=5361.000000
s hg38.chr15_KI270850v1_alt        133702 8 +    430880 AGAGTCTC
s panTro4.chr15_GL392289_random    130898 8 -    187897 AGAGTCTC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975244 8 +  99152023 AGAGTCTC
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106538131 8 - 171882078 AGCCTCTC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124452 8 +  24206276 AGTGTCTC
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826573 2 -  61074082 I
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I

a score=80553.000000
s hg38.chr15_KI270850v1_alt        133710 108 +    430880 CTGCTGCCACAGCCTCTCATCCTGTTGCCG-------AAGCCTCTCCTGCTCCAGGAGCTCCTCCACCTCGTCCAGCAGCCTCTCCCTCTCCAGCAGCCTCTCCTGCTCCTCCTG
s panTro4.chr15_GL392289_random    130906 108 -    187897 CTGCTGCCACAGCCTCTCATCCTCTTGCCG-------AAGCCTCTCCTGCTCCAGGAGCTCCTCCACCTCGTCCAGCAGCCTCTCCCTCTCCAGCAGCCTCTCCTGCTCCTCCTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975252 108 +  99152023 CTGCTGCCACAGCCTCTCATCCTGCTCCCG-------AAGCCTCTCCTGTTCCAGCAGCTCCTCCACCTCATCCAGCAGCCTCTCCCTCTCCAGTAGCCTCTCCTGCTCCTCCTG
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106538139  90 - 171882078 CTGCTCCCGCAGTCTCTCATCCTGCTCCCG-------CAACCTCTCCTGTTCCAACAGTTCCTCCACCTG------------------CTCCAGCAGCCTCTCCTGTTCCTCCTG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124460 108 +  24206276 ATGCTCCCACAGCCTCTGATCCTGCTCCCG-------CAGCCTCTCCTGTTCCAGCATCTCCTCCACTTGGTCCAGCAGCTGCTCCTCCTCCAGCAGCCTCTTCTGCTCCTCCTG
i chlSab2.chr29                 C 0 I 138
s canFam3.chr9                    5826575  93 -  61074082 ------CCGCTGCTCCTGCTCCCGGTTCAGGCGACTCAAACCTTCGTTG----------TCTTTCACTTGGGCCTGCA------CCTGCTCGGCCAGGCTCTCCAGCTCCTTCTG
i canFam3.chr9                  I 2 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807  97 - 162156779 I
e nomLeu3.chr6                   25649556  26 - 121039945 I

a score=42337.000000
s hg38.chr15_KI270850v1_alt        133818 51 +    430880 --------CCGCCTCTCCTGTTCTAACAGCTTCTCCACCTCTTCCAGCAGCCT---------CTCCTG
s panTro4.chr15_GL392289_random    131014 51 -    187897 --------CTGCCTCTCTAATACTAACAGCTTCTCCACCTCTTCCAGCAGCCT---------CTCCTG
i panTro4.chr15_GL392289_random C 0 T 73073
s ponAbe2.chr15                  79975360 51 +  99152023 --------CCGTCTCTCCTGTTCTAACAGCTTCTCCACCTCTTCCAGCAGCCT---------CTCCTG
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106538229 51 - 171882078 --------CCACCTCTCCTGTTCCAATAGCTTCTCCACCTGCTCCAACAGCCT---------CTCCTG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124706 51 +  24206276 --------CCGTCTCTCCTGTTCCAACAGCTTTTTCACCTCCTCCAGCAGCCT---------CTCCTG
i chlSab2.chr29                 I 138 C 0
s canFam3.chr9                    5826668 66 -  61074082 TAGTTGTTCAGTCTCGGCG--TGCAGCCGCTGCTGCTCCTCCTCCAAGGGCCTGGCTGGGGGCTCCTG
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I

a score=8616.000000
s hg38.chr15_KI270850v1_alt        133869 12 +    430880 CCCTGGCAGCTT
s panTro4.chr15_GL392289_random     57992 12 -    187897 CCCTGGCAGCTT
i panTro4.chr15_GL392289_random T 73073 C 0
s ponAbe2.chr15                  79975411 12 +  99152023 CCCTGGCAGCTT
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106538280 12 - 171882078 CTCTGGAAGCCT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124757 12 +  24206276 CTCTGGCAGCCA
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5826734 12 -  61074082 GGCTGGGGGCAC
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I

a score=10778.000000
s hg38.chr15_KI270850v1_alt        133881 54 +    430880 --CT----------------------CCTGTTCACACAGCCTCTC--CTCCTG----TTCACATAGCCTCTCCTCCTGTTCACA
s ponAbe2.chr15                  79975423 54 +  99152023 --CT----------------------CCTGTTCACATAGCCTCTC--CTCCTG----TTCACGTAGCCTCTCCTCCTGTTCATA
i ponAbe2.chr15                 C 0 I 74
s macFas5.chr7                  106538292 56 - 171882078 --CT----------------------CCTCCTCCCGCAGCCTCTCCTCTCCTC----TTCCAGCAGCTTCTCTACCTGGTTCAG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124769 54 +  24206276 --CT----------------------CCTGCTCCTGTATCCTCTC--ATCCTG----CTCATGTATCCTCTCCACCTGCTCACG
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5826746 82 -  61074082 CACTGTGGGGAGCAGGGGGAGGGGGACACACGCTAGGGGCCTCTCA-CCTCTGTGCCTTCAAAAAAGCCCTCTTCTTGATCCA-
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I
e panTro4.chr15_GL392289_random     58004  0 -    187897 C

a score=3120.000000
s hg38.chr15_KI270850v1_alt        133935  54 +    430880 CAGCCTCT-------C------------------------------------CTCCTGTTCACATAGCCTCTCCTCCTGTTCACACAGCCTCTC---------------CTC
s macFas5.chr7                  106538348 105 - 171882078 CAGCCTCT-------CATGCTCTAGCAGCTTCTCCTCCTCCTCCTCCGGTCTCTCCTGTTCCAACAGCTTTTTCACCTCCTCCAGCAGCCTCTCCTGCTCTGGCAGCCACTC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124823  54 +  24206276 TATCCTCT-------C------------------------------------CTCCTGCCCAGATAGCCTCTCCTCCTGCTCATGTAGTTTCTC---------------CTC
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5826828  60 -  61074082 CAGCTCCTAACTGGGC------------------------------------CTCCTCGCCCCAAACCTTGGCTTCCTG-GCTCACAATCCCTC---------------ACC
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807  97 - 162156779 I
e nomLeu3.chr6                   25649556  26 - 121039945 I
e ponAbe2.chr15                  79975477  74 +  99152023 I
e panTro4.chr15_GL392289_random     58004   0 -    187897 C

a score=1910.000000
s hg38.chr15_KI270850v1_alt        133989 2 +    430880 CT
s panTro4.chr15_GL392289_random     58004 2 -    187897 CT
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106538453 2 - 171882078 CT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124877 2 +  24206276 CT
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5826888 2 -  61074082 CT
i canFam3.chr9                  C 0 T 317
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I
e ponAbe2.chr15                  79975477 74 +  99152023 I

a score=13781.000000
s hg38.chr15_KI270850v1_alt        133991 39 +    430880 GTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCT
s panTro4.chr15_GL392289_random     58006 39 -    187897 GTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCT
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106538455 39 - 171882078 GCTCCCATAGACACTCATCCTGCTCACGTATCCTCTCCT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124879 39 +  24206276 GCTCATGTAGTTTCTCCTCCTGCCCAGATAACTTCTCCT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I
e ponAbe2.chr15                  79975477 74 +  99152023 I

a score=39525.000000
s hg38.chr15_KI270850v1_alt        134030 53 +    430880 CCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGT
s panTro4.chr15_GL392289_random     58045 53 -    187897 CCTGTTCACGTAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCATGT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975551 53 +  99152023 CCTGTTCACGAAGCCTCTCCTCCTGTTCACAAAGCCTCTCCTCCTGTTCACAA
i ponAbe2.chr15                 I 74 T 127
s macFas5.chr7                  106538494 53 - 171882078 CCTGCTCACGTATCCTCTCCTCCTGCCCAGATAGCCTCTCCTCCTGCTCATGT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124918 53 +  24206276 CCTGCTCATGTATCCTCTCCTCCTGCCCAGATAGCTTCTCCTCCTGCTCACGT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I

a score=16772.000000
s hg38.chr15_KI270850v1_alt        134083 42 +    430880 AGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGT
s panTro4.chr15_GL392289_random     58098 42 -    187897 AGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGT
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106538547 42 - 171882078 ATTTTCTCCTCCTGCTCACGTATCCTCTCCTCCTGCTCAGGT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3124971 41 +  24206276 ATCCTCTCCTCCTGCCCAGATAG-CTCTCCTCCTGCTCACGT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I
e ponAbe2.chr15                  79975604 127 +  99152023 T

a score=4617.000000
s hg38.chr15_KI270850v1_alt        134125 21 +    430880 AGCCTCTCCTCCTGTTCACAC
s panTro4.chr15_GL392289_random     58140 21 -    187897 AGCCTCTCCTCCTGTTCACAC
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106538589 21 - 171882078 ATCCTCTCCTCCTGCTCATGT
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T
e chlSab2.chr29                   3125012  0 +  24206276 C
e papAnu2.chr7                  102434807 97 - 162156779 I
e nomLeu3.chr6                   25649556 26 - 121039945 I
e ponAbe2.chr15                  79975604 127 +  99152023 T

a score=4356.000000
s hg38.chr15_KI270850v1_alt        134146 10 +    430880 AGCCTCTCCT
s panTro4.chr15_GL392289_random     58161 10 -    187897 AGCCTCTCCT
i panTro4.chr15_GL392289_random C 0 I 72894
s nomLeu3.chr6                   25649582 10 - 121039945 AGTCTCTCCT
i nomLeu3.chr6                  I 26 C 0
s macFas5.chr7                  106538610 10 - 171882078 ATCTTCTCCT
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T
e chlSab2.chr29                   3125012  0 +  24206276 C
e papAnu2.chr7                  102434807 97 - 162156779 I
e ponAbe2.chr15                  79975604 127 +  99152023 T

a score=3595.000000
s hg38.chr15_KI270850v1_alt        134156 10 +    430880 CCTGTTCACG
s panTro4.chr15_GL392289_random    131065 10 -    187897 CCTGTTCACG
i panTro4.chr15_GL392289_random I 72894 C 0
s nomLeu3.chr6                   25649592 10 - 121039945 CCTCCTTTCG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106538620 10 - 171882078 CCTGCTCACG
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T
e chlSab2.chr29                   3125012  0 +  24206276 C
e papAnu2.chr7                  102434807 97 - 162156779 I
e ponAbe2.chr15                  79975604 127 +  99152023 T

a score=41286.000000
s hg38.chr15_KI270850v1_alt        134166 64 +    430880 TAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACAC
s panTro4.chr15_GL392289_random    131075 64 -    187897 TAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCATGT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975477 64 +  99152023 TAGCCTCTCCTCCTGTTCACGTAGCCTCTTCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACAA
i ponAbe2.chr15                 T 127 C 0
s nomLeu3.chr6                   25649602 64 - 121039945 CAGCCTTTCCTCCTCCTTTCGCAGCCTCTGCTCCTGCTTTCGCAGCCTCTTGCCCTGCTCCCGT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106538630 64 - 171882078 TATCCTCTCCTCCTGCTCATGTATCCTCTCCTCCTGCCCAGATAGCCTCTCCTCCTGCTCATGT
i macFas5.chr7                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T
e chlSab2.chr29                   3125012  0 +  24206276 C
e papAnu2.chr7                  102434807 97 - 162156779 I

a score=83041.000000
s hg38.chr15_KI270850v1_alt        134230 91 +    430880 AGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCATGTAGCCT---CTCCTCCTGTTCATGTAGCCTCT
s panTro4.chr15_GL392289_random    131139 91 -    187897 AGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACACAGCCT---CTCCTCCTGTTCATGTAGCCTCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975541 91 +  99152023 AGCCTCTCCTCCTGTTCACGAAGCCTCTCCTCCTGTTCACAAAGCCTCTCCTCCTGTTCACAAAGCCT---CTCCTCCTGTTCATGTAGCCTCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25649666 88 - 121039945 AGCATTTCCTTTTGC---CGTAGCATTTCCTTTTGTTGACACAGTCT---ctcctgctcccgcgccctctgctcctcctgctcttggagcctct
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106538694 91 - 171882078 ATACTCTCCTCCTGCTCACGTATCCTCTCCTCCTGCTCACGTATCCTCTCCTCCTGCCCAGATAGCCT---CTCCTCCTGCTCATGTATCTTCT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3125012 91 +  24206276 ATCCTCTCCTCCTGCTCATGTATCCTCTCCTCCTGCCCAGATAGCTTCTCCTCCTGCTCACGTATCCT---CTCCTCCTGCTCATGTATCCTCT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T
e papAnu2.chr7                  102434807 97 - 162156779 I

a score=18723.000000
s hg38.chr15_KI270850v1_alt        134321 14 +    430880 CCTCCTGTTCACGT
s panTro4.chr15_GL392289_random    131230 14 -    187897 CCTCCTGTTCACGT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975632 14 +  99152023 CCTCCTGTTCACGT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25649754 14 - 121039945 gctcctgctcctgG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106538785 14 - 171882078 CCTCCTGCTCACGT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102434904 14 - 162156779 CTTTCTGCTCCTGC
i papAnu2.chr7                  I 97 C 0
s chlSab2.chr29                   3125103 14 +  24206276 CCTCCTGCTCACGT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5826890 317 -  61074082 T

a score=1175158.000000
s hg38.chr15_KI270850v1_alt        134335 678 +    430880 AGCCTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTTTTCCACCTCAGCCTGGAGCTGTCTTCCCACACTCTCTAGCTCCTTCCTTAGGTGGTTGGTCTCATCTTGTA------GCTGCTCTACCTTAGATGGCCCTGCTGGGGGCTCTGGGGCCAGGGGTTCAGCT-----------GAGAAAGCAAGCAGAGAATAAGGGCCTCTGGATTCTC--------------AAAAA-------------------AAAAAAAAAAATCCTCCCTTTGGTGCACAGCT----------CCTCCTCTCAGGCTTCCCAAACTTGGCCTCACTGCTAATGACTCCTCACACCCGGATGGTAGACAATCTTCCAAGTCACTTTCAGATAGAG--------------------AGCACTGT---GGGTGGCTGACAATGGGcactcctccctctttactgatggggacactgaggctcatggagatgacaagacttgtcctcccctggcaCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCATTCTAAGTCACCCCCA-CAGCCCTCTAATGCCAGTCCAGCTGCCAGGTCATGCCAGCCCCATCTTACCCGTCTGGTTTTTGAGTTTGAACAAGCTCCTCCCAAGCTTCTGTACCAGATGTATCTCATGCTTCTTCTCCTCCTTAGATGTGCGAACCTGCCCAAAGCAAAGGGGGAAAAGGGCCCTGGAG-GGAGG
s panTro4.chr15_GL392289_random    131244 678 -    187897 AGCCTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTTTTCCACCTCAGCCTGGAGCTGTCTTCCCACACTCTCTAGCTCCTTCCTTAGGTGGTTGGTCTCATCTTGTA------GCTGCTCCACCTTAGATGGCCCTGCTGGGGGCTCTGGGGCCAGGGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCTC--------------AAAAA-------------------AAAAAAAAAAATCCTCCCTTCGGTGCACAGCT----------CCTCCTCTCAGGCTTCCCAAACTTGGCCTCACTGCTAATGACTCCTCACACCCGGATGGTAGCCAATCTTCCAAGTCACTTTCAGATAGAG--------------------AGCACTGT---GGGTGGCGGACAATGGGcactcctccctctttactgatggggacactgaggctcatggagatgacaagacttgtccTCCCCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCATTCTAAGTCACCCCCA-CAGCCCTCTAATGCCAGTCCTGCTGCCAGGTCATGCCAGCCCCATCTTACCCGTCTGCTTTTTGAATTTGAACAAGCTCCTCCCAAGCTTCTGTACCCGATGTGTCTTATGCTTCTTCTCCTCCTTAGATGTGCGAACCTGCCCAAAGCAAAGGGGGAAAAGGGCCCTGGAG-GGAGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79975646 689 +  99152023 AGCCTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTTTTCCACCTCGGCCTGGAGCTGTCTTCCCACACTCTCCAGCTCCTTCCTTAGGTGGTTGGTCTCATCTTGTA------GCTGCTCCACCTCAGAGGGCCCTGCTGGGGGCTCTGGGGCCAGAGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCTCaaaaaaaaaaaaaaaaaaa-------------------aaaaaaaaaaaTCCTCCCTTTGCTGCACAGCT----------CCTCCTCTCAGGCTTCCCTAACTTGGCCTCACTGCTAATGATTCCTCACACCCAGATGGTAGCCAATCTTCCAAGTCACTTTCACATAGAG--------------------AGCACTGC---GGGTGGCTGACAATGGGCACTCctccctctttactgatggggacactgaggctcatggagatgacaagacttgccGTCTCCTGGCACACACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGATATTCTAAGTCACCCCCA-CAACTCTCTGATGCCAGTCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCATCTGGTTTTTGAGTTTGAACAAGCTCCTCCCAAGCTTCTGTACCCGATGTATCTCATG---CTTCTCCTCCTTCAATGTGTGAGCCTGCCCAAAGCACAGTGGGGAAAGGGCCCTGGAG-AGAGG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25649768 690 - 121039945 AGCCTCTGCTTTTGTTCCTTGCTCAGGAGACTCAAGGCCTGATTGTTTTTCACCTGGGATTGGAGCTTTCCCTCCAGTACCTCCACCTCCTTCCTCAGCTGTTTGGCCTCATCCTGTA------GCTGCTCCACCACAGAGGTCACTGCTGGGGGCGCCAGGGATGGGGGCTCAGCT-----------GAGAAACGAAGCAGACAACAAGGGCCTCTGGATTCcc--------------caccccccctacccacccacccCTCAAAAAAACAACCCTCCTCTTGATGCACAG-------------CTCCTCTCAGGGTTCCCAAACTTGGCCTCACTGCTAATGATGCGTCGCACCC-GATGGTAGCCAAT-TTCCAAGCCACTTTCACATAGAG--------------------AGCACTGT---GGGTGGCTGACAATGGGCactccttcctctttgctgatggggaccctgaggcttatggagatgacaaaacttgccATCTCCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACTCACCTCCCTGGAGCATTCTAAGCCACCCCCA-CAGACCTCTGATGCCAGTCCTGCTCTCAGGTCACACCAGCCCCATCTTACCCATCCGGTTTTGGAATTCCAACAAGCTCCTCTCCAGCTCCTGTATCCGATGTATGTCGCGCTTCTTCTCCTCCTTCAATAGGAGAGTCTGCCCAAATCACAGGGG--AAAGGGCTCTGGAG-AGAGG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106538799 680 - 171882078 AGCCTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTTTTCCACCTCGGCCTGGAGCTGTCTTCCCAGACTCTCCAGCTCCTTCCTTAGGTGTTTGTTCTCATCTTGTA------GCTGCTCCACCTCAGAGGGCCCTGCTGGGGGATCTGGGGCCCGGGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGTTCTCTGGATTCTC----------aaaaaaaaa-------------------aaaaaaaaaaaTCCTCCCATTGGTGCAGAGCT----------CCTCCTCTCAGGCTTCCCAAACTTGGCCTCACTGCTAAGGATTCCTCGCACCCAGGTGGTAGCCAATCTTCCAAGCCACTTTCA-ATGGAG--------------------AGCACTGT---GGGTGGCTGACAATGGGCACTCCTCCCTCTTTGCTGATGGGGACACCAAGGCTCAAGCAGATGACAAGGCTTGCAGTCTCCTGGCACAGACCTCTCTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCATTCTAAGCCACCCCCA-CAGCCCTCTGATGCCGGTCCTGCTCCCAGGTCACGCCAGCCCCATCTTACCCCTCTGGTGTTTGAGTTTGAACAAGCTCCTCCCAAGCTTCTGTACCCGATGTATCTCACGCTTCTTCTCCTCCTTCAATGTGTGAACCTGCCCAAAGCACAGGGCG-AAAGGGCCCTGGTG-ATAGG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102434918 664 - 162156779 GGCCTCTACTGCT---CCCGGTTCAGGCGACTCAAGCCCTCATTGGCTTCCACCTGGGCTTGGAGCTGTCCTGCCAGACTCTCCAGCTCCTTTCACAGGTGCTTGACCTCAGCTTATA---GCTGCTGCTCCACCTCTGAGGGTCCTGCTGGGGGCTCCAGGTGTAGGGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCTC-------------------------------------------AAAAAACCCTCCTCTTGGTGCACAG-------------CTCCTCTCAGGCTCTGCAAACTTGGCCTCCCTGCTAATGATTCCTTGTACTC-GATGGTAGCCAATCTTCCAAGCCCCTTTCAGATAGAG--------------------AGCACTGT---GGGTGGCTGACAATCGGCACTCCTCCCTCTTTGttgatggggacactgaggctcatGGAGATGACAAGACTTGCCATCTCCTGGCACAGAcctctttccctctgcctcaaagcccttccatccacccacctccctgggGCATTCTAAGCGACCCCCA-TAGCCCTCCGATGCCAGTCCTGCTTTGAGGtcaccccagccccagctcacCCATCTGGTTCTTCAGTTTGGTCAAGCTTGTCTCCAGCTCCTGTACCTGATGCAGGTCatgcttcttctcctccttcaatGTGCAAACCTGCCCAAAGCACAGGGGG-AAAGGGCCCTGGAGAAGAGG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3125117 674 +  24206276 ATCCTCTCCTTCTGTCTCCTGTTCAGGAGATTCAGCATCTGATTGTTTTCCACCTCGGCCTGGAGCTGTCTTCCCAGACTCTCCAGCTCCTTCCTTAGGTGTTTGGTCTCATCTTGTA------GCTGCTCCACCTCAGAGGGCCCTGCTGGGGGATCTGAGGCCCGGGGTTCAGCT-----------GAGAAAGGAAGCAGACCATAAGGGTCTCTGGATTCTC----------------AAA-------------------AAAAAAAAAAATTCTCCCATTGGTGCAGAGCT----------CTTCCTCTCAGGCTTCCCAAACTTGGCCTCACTGCTAAGGATTCCTCGCACCCAGATGGTAGCCAGTCTTCCAAGCCACTTTCA-ATGGAG--------------------AGCACTGT---GGGTGGCTGACAATGGGCACTCCTCCCTCTTTGCTGATGGGGACACCAAGGCTCAAGCAGATGACAAGGCTTGCAGTCTCCTGGCACAGACCTCTCTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCATTCTAAGCCACCCCCA-CAGCCCTGTGATGCCGGTCCTGCTCCCAGGTCACGCCAGCCCCATCTTACCCCTCTGGTGTTTGAGTTTGAAGAAGCTCCTGCCAAGCTTCTGTACCCGATGTATCTCACGCTGCTGCTCCTCCTTCAATGTGCGAACCTGCCCAAAGCACAGGGCG-AAAGGGCCCTGGTG-ATAGG
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5826573 682 -  61074082 AGCCGCTGCTCCTGCTCCCGGTTCAGGCGACTCAAACCTTCGTTGTCTTTCACTTGGGCCTGCACCTGCTCGGCCAGGCTCTCCAGCTCCTTCTGTAGTTGTTCAGTCTCGGCGTGCAGCCGCTGCTGCTCCTCCTCCAAGGGCCTGGCTGGGGGCTCCTGGGCTGGGGGCACCACTGTGGGGAGCAGGGGGAGGGGGACACACGCTAGGGGCCTCTCACCTCTG----------------TGC-------------------CTTCAAAAAAGCCCTCTTCTTGATCCACAGCTCCTAACTGGGCCTCCTCGC-----CCCAAACCTTGGCTTCCTGGCTCACAATCCCTCACCCTCAGGGGATATGCACTCTTTCAAGACACTTTTGAAAAGAGTTTTTAATATTTTTATGCTCAGGACAATTCGGAGTGGTTGCCAGCGGGCACACTGCCC---------------------------------------AACCTGGCCAACTCCTAGTACGGACCTCTTTCCCTGGGCCACAGTCCCCTTCCATCCACCCACATCCTTAGGGCATTTGAAGGCATCCTCACCAGCCCTCTGGCACCAATCCTGCTCCCAGATC-CTCCTGCCTCAGCTTACCTATCTGGTTCTTCAGTTCAGCCAAGTTGGCCTCCAACTCCTGCACCTGACTCATGCTGTGCTCCTTCTCTTCCCTCAATCTGTGCATCTGCCCAAATCACAGGGGGGATGGGTACATGGGT-GGGGG
i canFam3.chr9                  T 317 I 4002
e calJac3.chr10                 113866255 79192 - 132174527 I

a score=-2263.000000
s hg38.chr15_KI270850v1_alt        135013 7 +    430880 -GGCTG--GT
s panTro4.chr15_GL392289_random    131922 7 -    187897 -GGCTG--GT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79976335 7 +  99152023 -AGCTG--TT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25650458 7 - 121039945 -GGCTG--GT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106539479 5 - 171882078 -GGCTG----
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102435582 7 - 162156779 -GGCTGGT--
i papAnu2.chr7                  C 0 I 3476
s chlSab2.chr29                   3125791 5 +  24206276 -GGCTG----
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5831257 5 -  61074082 GGGAT-----
i canFam3.chr9                  I 4002 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I

a score=476.000000
s hg38.chr15_KI270850v1_alt        135020 1 +    430880 G
s panTro4.chr15_GL392289_random    131929 1 -    187897 G
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79976342 1 +  99152023 G
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25650465 1 - 121039945 G
i nomLeu3.chr6                  C 0 I 2432
s canFam3.chr9                    5831262 1 -  61074082 A
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e chlSab2.chr29                   3125796 0 +  24206276 C
e papAnu2.chr7                  102435589 3476 - 162156779 I
e macFas5.chr7                  106539484 0 - 171882078 C

a score=352365.000000
s hg38.chr15_KI270850v1_alt        135021 269 +    430880 AACGTCCAGAGACAGAGTTTGAGAA-----AGGCCCACCCCCCTTCTGCCAGTTTGTGATTTAGAAACGTGcattcattcaacaaacatttactgagc---------------atgtacaggccaggtacagttcttcatagcagagatataaaacagcaaaggacagacaggagcccttggccctgaggtttccattctaggggCCTTTAAATCTCTgactttcagagctaaccaagacctttgatact-----ctctacctcctccagaaacacgagcataaagaggagaga
s panTro4.chr15_GL392289_random    131930 269 -    187897 AACCTCTAGAGACAGAGTTTGAGAA-----AGGCCCACCCCCCTTCTGCCAGTTTGTGATTTGGAAACGTGcattcattcaacaaacatttactgagc---------------atgtacaggccaggtacagttcttcatagcagagatataaaacagcaaaggacagacaggagcccttggccctgaggtttccattctaggggCCTTTAaatctctgactttcagagctaaccgagacctttgatact-----ctctaccttctccagaaacacgagcataaagaggagaga
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79976343 269 +  99152023 AACCTCTAAAGACAGAGTTTGAGAA-----AGTCCCACCCCCCTTCCGCCAGCTTGTGATTTAGAAAGGTGcattcatccaacaaacatttaatgagc---------------acgtacaggccaggtacagttcttcatggtagagatataagacagcaaaggacagacaggagcccttggccctgaggtttccactctaggggCCTTTAaatctcagactgtcagagctaacagagacctttgatact-----ctctgcctcctccagaaacaccagcctaaggaggagaga
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                   25652898 262 - 121039945 AACCTCTAGAGAGGGAGTCTCAGGA-----AGACCCA---CCCTTCTGCCAGCTTGTGATTTAGAAAGGTGCCttcattcaacaaacatttactgagc---------------acatacgggccaggtatggttcttcacagc--agatataggatggaaaaggacagacaggagcccttggccctgagctttccattctaggggCCTTTAaatctcagactctcagagctaacagagacctttgatg-------ctctacctcctccagaaacacgagcccaaggagaacagg
i nomLeu3.chr6                  I 2432 N 0
s macFas5.chr7                  106539484 266 - 171882078 AACCTCTAGAGACAGAGTTTGAGGA-----AGGCCC--CCCCGTCCTGCCAGCTTGTGATTTAGAAAGGTGcgttcattcaacaaacatgtgctgagc---------------acctacaggccaggtgtggttcttcacagcggagatagaagacagaaaaggacagacaggagcccttggccctgaggtttccattctaggggCCTTTAAATCTCGGACTCCCAGAGCGAACAGAGACC-TTGATACT-----CTCTACCTCCTCCAGAAACACGAGCCCAAGGAGGAGAGA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3125796 267 +  24206276 AACCTCTAGAGACAGAGTTTGAGAA-----AGGCCC--CCCCATTCTGCCAGCTTGTGATTTAGAAAGGTGcgttcattcaacaaacatctgctgagc---------------acctacaggccaggtatggttcttcacagcagagacagaagacagaaaagaacagacaggagcccttggccctgaggtttccattctaggggCCTTTAAATCTCGGACTCCCAGAGCTAACAGAGACCTTTGATACT-----CTCTACCTCCTCCAGAAACACGAGCCCAAGGAGGAGAGA
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5831263 240 -  61074082 AACCTCCAGAAACAGGAGTTGAGAAGCAAGAGACTA----CCCTTCTGGTAGCTCGTGATTTGGAAGGGTGCTttcattcaacaagtatttactgagcaccctgggcctaagtacccacaggccaggttctgttcttaatagcagggatacaggaatgagaaggac--------------------------------------------------CTgattctctgagctaaaggggaccttggacacctctaattctacctcctcaggagactgaagcccagagaggaaagg
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=35865.000000
s hg38.chr15_KI270850v1_alt        135290 25 +    430880 tggcttgtccagactcaaa----aagcaa
s panTro4.chr15_GL392289_random    132199 25 -    187897 tggcttgtccagactcaaa----aagcaa
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79976612 25 +  99152023 tggcttgtccagactcaaa----aagcaa
i ponAbe2.chr15                 C 0 I 548
s nomLeu3.chr6                  101765929 25 + 121039945 TGGCTGGTCCAGACTCAAA----AAGCAA
i nomLeu3.chr6                  N 0 C 0
s macFas5.chr7                  106539750 24 - 171882078 AGGCTTGTCCAGACTC-AA----AAGCAA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3126063 25 +  24206276 TGGCTTGTCCAGACTCAAA----AAGCAA
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5831503 29 -  61074082 tgactcatccaagttcaaagatggagcaa
i canFam3.chr9                  C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=1171648.000000
s hg38.chr15_KI270850v1_alt        135315 825 +    430880 attagggactgaggcagggcagaaatatggacccctgacaaccagtcAGGCTAGTGCTTCCCAGAGAGGTGACAACCCCAGGGCATGTGTGGCAAGGACTAGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTGCAGAAGACCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTG-CCCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCTTAGCTCCTTTCTTCAGGGCCCCAAGAGGAAACTGGAGTCCAGGATTGACCAGCTGTAATCAGGGGACCCCACTGGACTCTTACCAGTGAATTGATGTTTTCAGTGAGTTGACTGATTATTGCGGAGC-TTGAATCCAGGGCCACTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------GAGAAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGAGAGAATAATCATTAGGGCTGGTGGGGG---TGTGTGGGCTGCCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTCGGCCCAGGGCCTCTTACCTCCAGATCCTGCAGGGTAGTAGAGGATGCACGGCCCTCCCCGTAGACACCTGTTGCTGACTGCAAGAGATGAGAGTG--CACATGGAGATGTTCTGT-CCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTTCCCCCATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTTCCCCATAACTCCTTTGTGCCAACTTCTCTCGTGGTTCTTATCTCCCCACCATCC-------
s panTro4.chr15_GL392289_random    132224 824 -    187897 attagggactgaggcagggcagaaatatggacccctgacaaccagtcAGGCTAGTGCTTCCCGGAGAGGTGACAACCCCAGGGCATGTGTGGCAAGGACTAGAGCAAGG-TGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTGCAGAAGAGCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTG-CCCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCCTAGCCCCTTTCTTCAGGGCCCCAAGAGGAAACTGGAGTCCGGGATTGACCAGCTGTAATCAGGGGACCCCACTGGACTCTTACCGGTGAATTGATGTTTTCAGTGAGTTGACTGATTATTGCGGAGC-TTGAATCCAGGGCCACTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------GAGAAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGAGAGAATAATCATTAGGGCTGGTGGGGG---TGTGTGGGCTGCCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCATCTCGGCCCAGGGCCTCTGACCTCCAGATCCTCCAGGGTAGCAGAGGATGCACGGCCCTCCCCGTAGATACCTGTTGCTGACTGCAAGAGATGAGAGTG--CACATGGAGATGTTCTGT-CCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCATCCCCCATCAACTGGCAAAAGCTTCTTTTCTGTCTATCTTGGACCCTTTTTCCCATAACTCGTTTGTGCCAACTTCTCTCGTGGTTCTTATCTCCCCACCATCC-------
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79977185 824 +  99152023 ATTAGGGACTGAGGCAGGGCAGAAATATGGGCCCCTGACAACCAGTCAGGCTACTGCTTCCCTGAGAGGTGACAACCCCAGGGCATGTGTGGCAAGGACTAGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGAGCAGTGCAGAAGAGCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTGCCCCAGCTCCCCATTCGCCCTTGGCATCGGGGGCCCCTAGCCCCTTTCTTCAGGGCCCCAAGGGGAAACTGGAGTCCAGGATTGACAGGCTGGAATCACGGGACCCCACTGGACTCTTACCAGTGAATTGATGTTTTCACTGAGTTGACTGATTATTGCGGAGC-TTGAATCCAGGGCCACTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------AAGGAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGACAGAACAATCATTAGGGCTGGTGGGGG----GTGTGGGTTGTCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTCGGCCCAGGGCCTCTTACCTCCAGATCCTTCAGGGTAGCAGATGATGCAGGGCCCTCCCCATAGATACCTGTTGCTCACTGCCAGAGATGAGAGTG--CACATGGAGATGTTCTGT-CCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTT-CCCCATCAACTGGGAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCATAACTCCTTTGTGCCAACTTCTCTCATGGTTCTTCTCTCCCCACCATCC-------
i ponAbe2.chr15                 I 548 C 0
s nomLeu3.chr6                  101765954 825 + 121039945 ATTAGGGACTGAGGCAGGGCAGAAATTCGGGCCCCTGACAACCAGTCAGGCTAGTGCTTCCCTGAGAGGCGACAACCCCAGGGCATGTGTGGCAAGGACTAGAGCAGGGGTGTCTGGAGAAGAGACAGTCAGCAAAGAGGGCAGTGCGGAAGAGCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTGCCCCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCCTAGCCCCTTTCTTCAGGGCCCCAAGCGGAAACTGGAGTCCAGGATTGACAGGCTGGAATCAGGGGACCCCACTGGACTCTGACCAGTGAGTTGCTGTTTTCACCAAGTTGACCGATTATTGCGGAGC-TTGATTCCAGGGCTACTGGTAGTTCTTGATACTGGCTCTGAGGTGCATGCAGA----------GAGGAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGACGGTACAATCATTAGGGCTGGGGGCGG---GGTGTGGGCTGTCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTCGGCCCAGGGCCTCTTACCTCCAGATCCTTCAGGGTAGCAGATGACACAGGGCCCTCTCCATAGATACCTGTTGCTGACTGCAAGAGATGAGAGTG--CACATGGAGATGTTCTGT-CCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTT-CCCTATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCATAACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCCCACCATCC-------
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106539774 808 - 171882078 ATTAGGGACTGAGTCAGGACAGAAATACGGGACC----CTGACAAACAGGCTAGTGCTTCCCTGAGAGGGAAGAACCCCAGGGCGTGTGTGGCAAGGACTCGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTGCAGAAGAGCCATGCTGCACGTTCTGTGCTCTGGGGTCCATCCAGGTGAGGCCTGGGTGCCCCAGCTCCCCATTTTCCCATGGCACCAGGGGCCCC-AGCCCCTTTCCTCAGGGCCCCAAGGGGAAAC--GAGTCCAGGATTGGCAGCGTGGAATCAGAGGACGCCACTGGACTCTTCCCAGTGAATGGATGTTTCCACTGAGTTGACTGATTATTGTGGAGCTTTGAGTCCGGGGCTCCTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------GAGGAGGAGTTGGAGGAGGATTGCGGGGAGGGGTAGAGAGAAGAGTCATTAGGGCTGGGGAGGGGTGTGTCTGGGCTGTCTCAGCTGGCAGAGGGGCAACCAGCCCCTGCTGTGGGAGGAGGT-------------TGCAGGGTCACTGAACCTCGGCCCAGGGCCTCTTACCTCTAGATCTTTCAGGGTAGAAGATGACACAGGGCCCTCCCCGTAGACACCTGTTGCTGACTACAAGAGATGAGAGTG--CACATGGAGATGTTCTGT--CCCCCTCAGTGTCTAAGCCCTCTGACTTCCTTTCTT-CTCCATCAACTGACAAAAGTTTCTTTTCTGCCTATCTTGCACCCTTTGTCCCATAACTCCTTTGTGCCAACGTCTCTCATGGTTTTTATCTCCCCACGATCC-------
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3126088 818 +  24206276 ATTAGGGACTGAGTCAGGATAGAAATACGGGTCC--GACAAACAGTCAGGCTAGTGCTTTCCTGAGAGGCAACAACCGCAGAGAGTGTGTGGCAAGAACTCGAGT-GGAGTGTCTGGAGAAGAGAG----AGCAGAGAGAGCAGTGCAGAAGAGCCATGCTGCACGGTCTGTGTTCTGGGGTCCATCCAGGTGAGGCCTGCGTGCCCCAGCTCCCCATTTTCCCATGGCACCAGGGGCCCCTAGCCCCTTTACTCAGGGCCCCAAGGGGAAAT--GAATACAGGACTGGCAGCGTGGAATCAGAGGATGCCACTGGACTCTTCCCAGTGAATTGATGTTTTCACTGGGTTGACTGATTATTGTGGAGCTTTGAGTCCGGGGCTCCTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------GAGGAGGAGTTGGAGGAGGATTGTGGGGAGCGGTAGAGAGAACAGTCATTGGGGCTGGGGAGGGGTGTGTCTGGGCTGTCTCAGCTGGCAGAGGGGCAACCAGCCCCTGCTGTGGGAGGACGTTGGAGGGCTAGCCTGCAGGGTCACTGAACCTCGGCCCAGGG-ATCTTACCTCTAGGTCTTTCAGGGTAGTAGATGACACGGGGCCCTCCCCGTAGACACCTGTTGCTGACTACAAGAGATGAGAGGG--CACATGGAGATGTTCTGT--CCCCCTCAGTGTCTAAGCCCTCTCACTTCCTTTCTT-CCCCATCAACTGGCAAACATTTCTTTTCTACCTATCTTGGACCAGTTGTCCCATAACTCGTTTGTGGCAACTTCTCTCATGGTTTTTATCACCCCATGATCC-------
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5831532 787 -  61074082 attaggggttgggtcagggcaggagcac------------accagccaagccagtgcttcctcCAGAGGCTACAGCCCTGGGGCAAGTATGGAAAGGACTCAAGCAGGGGTGTCCGGAGAACAGAAGGA-GGCAAAGAAGGCAGCCACAGAGAGCCATGCCGCA-------TGCTCTGGGGTCCCTCCACCTGAGACTCAAACCCCCCGACACCCCATTCTCCCTTAGCACCAGGGTCCCCCAGCCCCTTTCTTCAGAGCCCCAGGGAAAAACTGGAGCCCCAGATTGGCAGTGTGGAATCAGGGGACCCCACTGGACTCTTACCAATTCCTCTATCTTGCTACTGAGTTGTTTGTTTGTTAGATTGC-TGGAGTCCAGGGCTAGTGATAGCTCTTGGTACCGGCTCTGAGGCGCATGCAgaggaggaggaggaggaggagTTGGACGAGGGTT--GGGGAGAGGTAGAGAGAGCAGTCATTAGGGTTGG--------------GGGCTGTCTGGGCTGGCAGCGGGGCACCCAGCCCCCGCTGTGGGAGGAGAT--GGGGGCTGGCCTGCAGGGTCCTGAGACCATGGTCTAGTGCCACTTACCTCTAGATCCTTTATGTTAGCAGAAGATGCCAGGCCCTCCCCATTGATGTAGGATGAAGACTAGGAGACACGAAAGGGCTCACATGGAGGCGCACTCTGCCCGCCCCAGTACCTAAGCCCTCTGACTCCTCATCCT-GCCCATCAGCTGCAAA------CTTTTCTGCCTAACT--AACCC------------CTCCTTTGTGCCA---CTCCTCCTGGTTCTTAGCCCCCCGTCATCATCCATCC
i canFam3.chr9                  C 0 I 4609
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=1003494.000000
s hg38.chr15_KI270850v1_alt        136140 705 +    430880 CACCCTGGGGCCCTTTCAGTGACTCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTT-CCCCTTGAGACTGGGGATGAGGAAAATCA----aacagca--------acgaccatttcctcagtgtcctgggtgtttgcagcaggccatgtactaa-ggattcacataaaagcaacaataacgaatctcatttaaacttcacaaatgg----------------------------------------------aagtcaaaaaataccac-----------------------------------------------------------------------------ctctatt---atacagatg-----tgaaaagagaggcccaaagacctcaagcaacttgccc---------------taaatcatatgctaatcaatCCCTAATCA--------ATTCTTAGCAGACGGAGAGGCAGGATTCAAATCCAGAATTCTTAACCAGTACCCAACAGTCCATCTACAATCTTAACAATTACCCTCTACTGCCCCTTGGGC-CCCCTGTCCCCAGGAGCCTGGCCCGCCGAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCA---TTGACTTTCTTTTTCCTGTTAGCTCCTGCTGGAATG-----------------------------CCAGGGCTCTTCCTCTGCCAATATGCTTTTAACTGTGGGAAAGAAGAGCAGTAACACTCATGAGaatgatcagcccctacagccacatcctcctttacagttttgacaaaatacccttata--taccatctgatgtaatgccaccaacaaccgtacaaggtGTTGTCACAATC
s panTro4.chr15_GL392289_random    133048 705 -    187897 CACCCTGGGGCCCTTTCAGTGACTCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTT-CCCCTTGAGACTGGGGATGAGGAAAATCA----aacagca--------acgaccatttcctcggtgtcctgggtgtttgcagcaggccatgtactaa-ggattcacataaaagcaacaataacgaatctcatttaaacttcacaaatgg----------------------------------------------aagtcaaaaaataccac-----------------------------------------------------------------------------ctctatt---atacagatg-----tgaaaagagaggcccaaagacctcaagcaacttgccc---------------taaatcatatgctaatcaatcccaaatca--------atccttagcagacggagaggcaggattcaaatccagaattcttaaccagtaCCCAACAGTCCATCTACAATCTTAACAATTACCCTCTACTGCCCCTTGGAC-CCCCTGTCCCTAGGACCCTGGCCCGCCGAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCA---TTGATTTTCTTTTTCCTGTTAGCTCCTGCTGGAATG-----------------------------CCAGGGCTCTTCCTCTGCCAATATGCTTTTAACTGTGGGGAAGAAGAGCAGTAACACTCATGAGaatgatcagcccctacagccacatcctcctttacagttttgacaaaatacccttata--taccatctgatgtaatgccaccaacaactgtacaaggtgttgtcacaatc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79978009 703 +  99152023 CA-CCTGGGGCCCTTTCAGTGACT-CTAAAGCGATAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTT-CCCCTTGAGACTGGGGATGAGGAAAATCA----AACAGCA--------ATGaccatttcctgggtgtcctgggtgtttgcagcaggccatgtactaa-ggattcacataaaagcaacaataacaaatctcatttaaacttcacaaatgg----------------------------------------------aagtcaaaaaataccac-----------------------------------------------------------------------------ctatgtt---atacagatg-----tgaaaagagaggcccaaagacctcaagcaacttgccc---------------taaatcatattctaatcaatccctaatca--------atccttagcagacggagaggcaggattcaaacccagAATTCTTAACCAGTACCCAACAGTCCATCCACGATCTTAACAATTACCCTCTACTGCCCCTAGAGC-CCCCTGTCCCCAGGAGCCTGGCCCACCAAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCA---TTGATTTTCTTTCTCCTGTTAGCTCCTGCTGGAATG-----------------------------CCAGGGCTCTTCCTGTGCCAATATTCTTTTAACTGTGGGAAAGAAGAGCAGTAACACTCATGAGAACAATCAGCCCCTATCACCACATCCTCCTTTACAGTTTTGACAAAATACTCTTATA--CACCATCTGATTTAATGCCACCACCAACTGTACAAGGTGTTGTCACAATC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101766779 708 + 121039945 CACTGTGGGGCCCTTTCAGTGACTCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGTCTGGCTT-CCCCTTGAGACTGGGGATGAGGAAAATCA----aacagca--------acgaccatttcctgggtgtcctgggtgtttgcaacaggccatgtactaa-ggattcacataaaagcaacaataacgaatctcatttaaacttcacaaatgg----------------------------------------------aagtcaaaaaataccac-----------------------------------------------------------------------------ctctgttataatacagata-----tgaaaagagaggcccaaagacctcaagcaacttgccc---------------taaatcatatcctaatcaatccctaatca--------atccttagcagacggagaggcaggattcaaacccaggattcttaaccagtacccaacagtccatccacaatcttaacaattaccctctactgcccctTGGGA-CCCCTGTCTCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGTAACCACCAGATGTGGCTGTGTCAGGGCTACTGCCA---TTGATTTTCTTTTTCCTGTTAGCTCCTGCTGGAGTG-----------------------------CCAGGGCTCTTTCTCTGCCAATATTCTTTTAACTGTGGGAAAAAAGAGCAGTAACACTCATGAGAACTATCAGCCCCTACAGCCACATCCTCCTTTACAGTTTTGACAAAATACTCTTATA--CACCATCTGATTTAATGCCACCAACAACTGTACAAGGTGTTGTCACAATC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106540582 730 - 171882078 CACCCTGGGGTCCTTTCAGTAACTCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCTTTGGTCTGGCTT-CCCCTTGAGACTGGGGATGAGGAAAATCA----AACAGCA--------ATGACCATTTCCTCGGTGTCCTGGGTGTTTAAAGcaggccatgtactaa-ggattcacataaa---agcgataacaaatctcattacaacttcacaaatgg----------------------------------------------aagtcaaaaaataccac-----------------------------------------------------------------------------ctctatt---atacagatg-----tgagaagagaggcctgaagacctcaagcaacttgccc---------------taaatcatatcctaattaatctctaatca--------atcattagcagatggagaggcaggattcaaacccagaattcttaaccagtacccaacagtccattcac-atcttaacaattatcctctactgCCCCTTGGGC-CCCCTGTCCCCAGGAGCCTGGTCAGCCAAGACTCACATCCGCAGGTGAGCGGTGACCACCAGAAGCGGCAGTGTCAGGGCTACTGCCA---TTGATTTTCTTTTTCCTGTTAGCTCCTGCTGGAACGCCAGGGCTCTTCCTCTGCCAATATTCTTTCCAGGGCTCTTCCTCTGCCAATATTCTTTTAACTGTGGGAAAGAAGAGCAGTGACACTCATGAGAACTATCAGCCCCTACAGCCACACCCTCCTTCACAGTTTTGACAAAATACTCTTATA--CACCATCTGATTTAATGCCACCACCAACTGTACATGGTGTTGTCACAATC
i macFas5.chr7                  C 0 I 16540
s chlSab2.chr29                   3126906 705 +  24206276 CACCCTGGGGCCCTTTCAGTGACTCCTAAAGGGACAGCCTGATGGCAAGTGACTCTTCTCATTGGTCTGGCTT-CCCCTTGAGACTGGGAATGAGAAAAATCA----AACTGCA--------GCGACCATTTCGTGGGTGTCCTGGGTATTTACAGCAGGCCATGTACTAA-GGATTCTCATAAAAACAACAATAACAAatctcatttaaactttacaaatag----------------------------------------------atgtaaaaaaatcccac-----------------------------------------------------------------------------ctctatt---atacagatg-----tgaaaagagagacccgaagacctcaagcaacttgccc---------------taaatcatatcctaattaatccctaatca--------atcattagcagatggagaggcaggattcaaacccagaattcttaaccagtacccaacagtccatccacaatcttaacaattatcctctactgCCCCTTGGGT-CCCCTGTCCCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGCGGTAACCACCAGAAGCGGCGGTGTCAGGGCTACTGCCA---TTGATTTTCTTTTTCCTGTTAGCTCCTGCTGGAACG-----------------------------CCAGGGCTCTTCCTCTGCCAATATTCTTTTAACTGTGGGAAGGAAGAGCAGTGACACTCATGAGAACTATCAGCCCCTACAGCCACATCCTCCTCTACAGTTTTGACAAAATACTCTTCTA--CACCATCTGATTTAATGCCGCCACCAACTGTACAAGGTGTTGTCACAATC
i chlSab2.chr29                 C 0 I 4
s canFam3.chr9                    5836928 841 -  61074082 CACCCTGGGTCTCTTTTGGTGCTTCCTATAGGGACAGTGTGATGGCAGATGGCTATTCTCACT-GCCTGGCTTCCCCCCTGAAGCCAGGGATGAGGAAAGTCACCAGGTCAGTATGTCAAATAGGACTA--CCCTTGA----CTGAATGCTTATCCCACACCAGGCCCTAAGGGATTAATATAAAAACAACATCAATggg--gcatctggacagcttagttggttaagtgtccgactcctgagttcttccggctcaggtcatgatctcagagtcatgggatccagccagacatcaggctccgtgctcagcagggagtctgcttgaggattctctctccctcttcctttgcccctccccctgctctctctc---aaataaataaacccttaaaagaaa---CAAAAAAAATCAACCATCTCATTCCAGTGTCACCAGTGTTAAGACAT-TATTACCCCAACTTTATTGATGGGGCATATTCCCAGCAGAGGGAGAGGTAGGATTCAAATCC--------------GTACCTGACATCTCCTCCACAGTATCAACCACCACCCTCTACTGCCCCTCAAACACCCCTGGCCCCAGGAACCTGGCCAGCCAGTACTCACATCCTCAGGAGAGTGACAATCATTGGAAGTGGTAGTCTCAGGGCTACTGCCATTTTTAATCTTCCTTTTCTTCTTTGCTCCT------ACA-----------------------------CCAGGGCTGTTCTTCTGCTGATACTCCCTCAACTACAGAAAGGAAAATCAGTGGGGCTCATGAGaactataaacccctgtattcatgtccaactttgtagttt--acaatatactcccatactcgccatctgacttaatgccaccaacagccctacaaggtGTTGTAATTCTC
i canFam3.chr9                  I 4609 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=1492833.000000
s hg38.chr15_KI270850v1_alt        136845 1062 +    430880 A----GTGACT---GAGAGGGATTCATATCATGGATAGaaaaaaaaaaa--aaagaaagatcaaaaa---aGGCAATACTGGAACTTAAACTCAGTCCTCTGACTCCACGCTCTGGGGTTTTGCCATG-AATCAGCAGCTTCCAGGGACCAAAACCAGGGGCAGAGGTAGAAAAGCACACATTAAGCAGGCAGGAACTGTAGGCCGTGTGGTTTAGAGTCATACATCCTCACAGGTCTGCTAGCGTGAAGAAGCGTACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAG--------CTTTTCTATTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGCAAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCATCCCCAAGTACATTAATG-----------CATTTTCTCAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccgcatttatcctgtggcACTCAAAGTACCCCAGGTTGAGACGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGGCCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAACC--------------------GTGGAGAACTCAG-A-AAAAAATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAAAAAA-CCAAACC-----AAACCCATTCT-CCCATTGCCACCCAGAGATACTGTGAACATTTTGAGCTCACAGGGGAAGTGTAGGCTTTTCCCACTGTCAAT--GTCTATGTTAAGG----------GAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCTCCACTCCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCT-GGTCTTGCAGCAGTAATGACAGTTCCTAGGGGCACTGTGACATCATTGCATTCCACTCCTCCCAGGGGAGGGGACCACATCAGCGCGATGCCCGAGTCGCTGCTCCACGATGGGGGAGGGAAACACACGGTTTCGACCCAGGTCCTCAGA
s panTro4.chr15_GL392289_random    133753 1067 -    187897 acttagtgact---gagagggattgatatcatggatagaaaaaaaaaag--aaagaaagatcaaaaa---aggcaatactggaacttaaactcagtcctctgactccaagctctggggttttgccatg-aatcaGCAGCTGCGAGGGACCAAAACCAGGGGCAGAGGTAGAAAAGTAAACATGAAGCAGGCAGGAGCTGTAGGCCGTGTGGTTTAGAGTCACACATCCTCACAGGTCTGCTAGCGTGAAGAAGCGCACCAGTACCTCTCACACTTTCGTATCAATGTGTCCTCATGGCAGAAGGCAG--------CTTTTCTATTAAATCCGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGCGAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCATCCCTAAGTACATTAATG-----------CATTTTCTCAAGAGAAtcaagggaaaacgatgcttcagaaagatgtcccacatttatcctgtggcACTCAAAGTACCCCAGGTTGAGACGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGGCCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAACC--------------------GTGGAGAACTCAG-A-AAAAAATGTGAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAAAAAAACCAAACC-----AAACCCATTCT-CCCATTGCCACCCAGAGATACTGTGAACATTTTGAGCTCACAGGGGAAGTGTAGGCTTTTCCCACTGTCAAT--GTCTATGTGAAGG----------GAGTAAGGCATCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCTCCACTCCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTACGATCAAAGGCC-GGTCTTGCAGCAGTAATGACAGTTCCTAGGGGCACTGTGACATCATTGCATTCCACTCCTCCCAGGGGAGGGGACCACATCAGCGCGATGCCAGAGTCGCTGCTCCACGATGGGGGAGGGAAACACACGGTTTCGACCCAGGTCCCCAGA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79978712 1061 +  99152023 ATTTAGTGATT---GAGAGGAGTTGATATCGTGGATAGAAAAAA-------AAAGAAAGAACAAAAA---AGGCAATATTGGAACTTAAACTCAGTCCTCTGACTCCAAGCTCTGGGGTTTTGCCATG-AATCAGCAGCTGCCAGGGACCAGAACCAGGGGCAGGAGAAGAAAAGTAAACATTAAGCAGGCAGGAACTGTAGGCCGTGTGGTTTAGAGTCACACATCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCAGTACCTCTCACACTTTCATATCAATGTATCCTCATGGCAGAAGGCAG--------CTTTTCTGTGAAATCTGAGAGTTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGAGAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCAGGTCTAAGTACATTAATG-----------CTTTTTCTCAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccacgtttatcctgtggcACTCAAAGTACCCCAGGTTGAGATGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGCCCACTGACTGAAGGGCAG--------------TCTGGTCCCATAACC--------------------GTGGAGAACTCAG---AAAATATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAGAAAA-CCAAACC-----AAACCCGTTCT-CCCATTGCCACCCAGAGATACTGTCAACGTTTTGAGCTCACAGGGGAAGTGTAGGCTTTTCCCACTGTCAATTAGACATTGTTAAGG----------GAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCACCACTCCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCC-GGTCTTGCAGCAGTAATGACAGTTCCTAGTGGGACTGTGACATCACTACATTCCACTCCTCCCTGGGG-GGAGACCACATCAGCGCGATGTCCGAGTCACCGCTCCATGATGGGGGAGGGAAACACAGGGTTTTGATCCAGGTCCTCGGA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101767487 1055 + 121039945 ATTTAGTGACT---GAGAGAGATTGATACCATGGGTAGGAAAAAAA-----AAAGAAAG----AAAA---AGGCAATACTGGAAGTTAAACTCAGTCCTCTGACTCCA-GCTCTGAGGTTTTGCCATG-AATCAGCAGCTGCCAGGGACCATAACCAGGGGCAGAGGTAGAAAAGTAAACACTAAGCAGGCAGGAACTGTAGGCCGTGTGGTTTAGAGTCATACATCCTCACACGTCTGTTAGTGT---GAAGTGCACCAGTACCTCTCACACTTTCATATCAATGTGCCCTCATGGCAGAAGGCAG--------CTTTTCTGTTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGAGAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCATCTCTAAGTACGTTAATG-----------ATTTTTCTCAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccacatttatcctgtggcACTCAAGGTACCCCAGGTTGAGATGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGGGCAAATCTCACCTCAGAGACCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAAGC--------------------GTGGAGAACTCAGAA-AAAAAATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAGAAAA-CC-AACC-----AAACCCATTCT-CCCATTGCCACCCAGAGATACTGTCAATGTTTTCAGCTCACAGGGGAAGTGGAGGCTTTTCCCACTGTCAAC--GTCTATGTGAAGG----------GAGTAAGGCAGCCTGAGACCTCTTGCTTCTAGGCCCCATAGTCCCCACTCCCCTTCCAGCTGGAAATTTATGCTGCAACCAGAGGAACCAGAAATGTGGTGAGAAAACTTAGGGGACTGGGTTGTAAGACCAAAGGCC-GGTCTTGCAGCAGTAATGACAGTTCCTAGGGGGACTGTGACATCACTACATTCCACTCCTCCCAGGGGAGGGGACCACATCAGCACGATGCCCGAGTAACCGCTCCACAATGGGGGAGGGAAACACAGGGTTTTGATCCAGGTCCTCGGA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106557852 1060 - 171882078 ----AGTGACT---GAGAGGGATTGATATCATGGCTAGAAAAAAACCAA--AAAAACAAAAG-AAAT---AGTTAATACTGGAACTTAAGCTCCGTCTTCTGACTCCAAGGTCTGGGGTTTTGCCATG-AATCAGCAGCTGCCAGGGACCAAAACCAGGGGCGGAGTTAGAACAGTAAACATGAAGGAGGCAGGAACTGTATGCCGTGTGGTTTAGAGTCATACATCCTCACATGTCCGTTAGTGTGAAGAAGTGCACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAG--------CTTTTCTGTTAAATCTGGGAATTTTTCAGAAAGAGGACAACCCAAGCCTGATTTCAGAGAGAAGTCTGGTATATGCTTAGAAACCTATGTGACTGTCATCCCTAAGGACATTAATG-----------TTTGATCTGAAGAGAATCAAGGGAAAATGACACTTCAGAAAGATGTCCCACATTCATCCTGTGGCACTCAAAGTACCCCAGGTTGAGATGATA---TGAGGAAGAGT-CAAGCTATCTAGTTCAGCTTCCCAAGATCTATTCCACTGAAGATGAGCAAATCTCACTTCAGAGACCACTGACTGAAGGACCA--------------TCTGGTCCCAGAACC--------------------GTGGAGAACTCAG-A-AAAGAATGTTAAAGTCTCTCTGCAAAGTAGAAGCCTGGGAGAAAA-CCAAACC-----AAACCCGTTCT-CCCATGGCCACCCAGAGATACTGTCAAGGTTTTGAGCACACAGGGGAAGTGCAGGCTTTTCCCACTGTCAAT--GTCTATGTGAAGG----------GAGTAAGGCAGCCTGAAACCTCCTGCTCCTGGGTCCCATAGTCCCCATTCCCCTTCCAACTGGAAATTTGTGCTGTGACCAGAGGATCCAGAAATGGGGTGAGAAAATTTATGGGACTGGGTTGTAAGATCAACGGCT-GGTCTTGTAGCAGCAATGGCAGTTCCTAGGGGGACTGTGACGTCACTACATTCCATTCCACCCAGGGGAGGGGACCACATCAGCATGATGCCCGAGTCACCACTCCATGATGGGGGAGGGAAACACAGGGATC-AACCCAGGTCCTTGGA
i macFas5.chr7                  I 16540 C 0
s chlSab2.chr29                   3127615 1048 +  24206276 ----AGTGACT---GAGAGGGATTGATACCATGGATAGAAaaaaataat--aataa-----------------taataCTGGAACTTAAGCTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGCCATG-AATCAGCAGCTTCCAGGGACCAAAACCAGGGGCGGAGTTAGAACGGTAAACATGAAGCAGGCAGGAACCGTATGCCGTGCGGTTTAGAGTCATACATCCTCACATGTCCGTTAGTGTGAAGAAGTGCACCAGTACCTCTCACACTTTCATGTCAATGTGTCCTCATGGCAGAAGGAAG--------CTTTTCTGTTAAATCTGGGAATTTTTCAGAAAGAGGACAACTCAAGCCTAATTTCAGGGAGAAGTCTGGTATATGCTTGGAAACCTATGTGACTGTCATCCCTAAGGACATTAATG-----------TTTTATCTGAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccacattcatcctgtggcACTCAAAGTACCCCAGGTTGAGATGATA---TGAGGAGGAGT-CAAGCTATCTAGTTCAGCTTCCCAAGATCTACTCCACTGAAGATGAGCTAATCTCACTTCAGAGACCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAACC--------------------GTGGAGAACTCAG-A-AAAGAATGTTAAGGTCTCTCTGCAAAGTAGAAGCCTGGGAGAAAA-CCAAACC-----AAACCCGTTCT-CCCATGGCCACCCAGAGATACTGTCAACGTTTTGAGCTCACAGGGGAAGTGCAGGCTTTTCCCACTGTCAAT--GTCTATGTGAAGG----------GAGTAAGGCGGCCTGAAACCTCTTGCTCCTGGGTCCCATAGTCCCTATTCCCCTTCCAACTGGAAATTTGTGCTGTGACCAGAGGATCCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCT-AGTCTTGCAGCAGTAATGACAGTTCCTAGGGGGACTGTGACATCACTACATTCCATTCCTCCCAGTGCAAGGGATCACATCGGCGTGATGCCCAAGTCACCAATCCATGATGGGGGAGGGAAACACAGGGTTCGGACCCAGGTCCTTGGA
i chlSab2.chr29                 I 4 C 0
s canFam3.chr9                    5837769 1082 -  61074082 ----AGTGACTGCAGAAATAGACTGATAACATGACTAAGAAAAGAAAAGGCAATAATGGAATTTAAACTTAGGCAATAATGGAATTTAAACTTAGTCTTCTGACTCTGAGTTCTGGGGTTATGCCATGAAATCAGCAGGTGCCAAAAGGCAAAACCAGAGGTGGAGGTGGAAAAG-----GTGGGAAAAATAACATCTGAGTAATCTG-ACTTTAGAGTC---CTTTCCTACAAATCTGTTA-----AAGCTGCACATTGGTATTTATCAAACTTTTATATCAACGTATCCTGATGGCAGAAGGCAGTAAAGGCACACACCTAGTGAATGTGGAAACCTAACAGAAAGAGGACAATCCAAGCACCATTTCAGAGAGAAGTCTATCATAATCTTACAAATCTACACAAATGTCATCCCT-AGTACATTACTATAAAAGGATTTTTCTTTCTCAAAAGAATCAAGCACAATTGATGCTTCA-------GTTCTATATT-ATCCTGTGGCCCTCAGAACACTCCATGTTGAGATGATGATTTGGGGAAGATTCCCACCTATGAAATTCAGGTTCCAGAGATCAGTTCCACAGAGGATAAGCAGATCTCACTCCAAAGAGCACTGATTGATGGGGGGGAGGCGGGGGGGACTCTGGT-CCAGAATCATAAGGAATTAAAATGTGAGGTAGAGAATTCAG-ATTTAATATGTGAAAGTCTTTCTGGACAGTAGAAACCTAAAAGGAAA-CCATACCAAAGAAAACACACTCTCCCCATTGTCACC--AAGGTGTTACCAATGTTCCATGATCACTGGTGTA------------------GTCAAT--GTTTAAGGATGGGGTACAGTCTAGAGTAAGGGCTCCTGAAACCTCTCCCACCTAGGTCCCATAGTCCCCAGTCCCCTTCAAGCTGGAAATTTGCGCCGCGACCGGAGAAACCGGAAAGGGTATGAAAACAC-TGGGAGACTGGGTAGTAAGACCAAACACCGGGGCTCCTGGCGCTAATGACAGTTCCGAGGGGGATTGTGACGTAACTACATTCCCCTCCTCCCT---------ACCA----------ACGCCCGAGTCGCCGCTCCGCGGTGGGGGAGGGGAAAGCAGGGCTGGGACCGAGGTCCCTGGA
i canFam3.chr9                  C 0 I 8
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=4153.000000
s hg38.chr15_KI270850v1_alt        137907 4 +    430880 GACG
s panTro4.chr15_GL392289_random    134820 4 -    187897 GACG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79979773 4 +  99152023 GATG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101768542 4 + 121039945 GACG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106558912 4 - 171882078 GACA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3128663 4 +  24206276 GACA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5838851 8 -  61074082 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=131895.000000
s hg38.chr15_KI270850v1_alt        137911 96 +    430880 CCAGCCCAAGAAGCCTAGGGAGGTCGAGCTTGGGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGTAGGGAGCCCCGGGAGTCACCAGCCCAAAGCCA
s panTro4.chr15_GL392289_random    134824 96 -    187897 CCAGCCCAAGAAGCCTAGGGAGGTCGAGCTTGGGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGTAGGGAGCCCCGGGAGTCACCAGCCCAAAGCCA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79979777 95 +  99152023 CCAG-CCAAGAAGCCCAGGGAGGTTGAGCTTAGGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGTAGGCAGCCCCAGGAGTCACCAGCCCAAAGTCA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101768546 83 + 121039945 TCAGCCCAAGAAGCCCAGGGAGGTCAAGCTTGGGGC-------------GGCAGAGTCTGCAGTAGGGAGCCCGAGGAGTCACTAGCCCAAAGTCA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106558916 96 - 171882078 CCAGCCCAAGGAGCCCAGGGAGGTGGAGCTTGGGGCAGCAGGAGGGGAGGGCAGAGTCCGCAGTAGGGAGCCCCGGGAATCACCAGCCTAAAGTCA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3128667 96 +  24206276 CCAGCTGAAGGAGCCCAGGGAGGTCGAGCTTGGGGCAGCAGGAGGGGAGGGCAGAGTCCGCAGTAGGGAGCCCCAGGAATCACCAGTCAAAAGTCA
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5838859 95 -  61074082 CCGGCCTGGAGAGCCCAGGTCCTCCGCTTCT-GGGTGGCAGAAGGCTAGGGCCAAACCTGGAGCAGGGAGCCCGGGGAGTCACCAGCCCAAAGTCA
i canFam3.chr9                  I 8 T 90
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=13936.000000
s hg38.chr15_KI270850v1_alt        138007 11 +    430880 CCCAGGGATGA
s panTro4.chr15_GL392289_random    134920 11 -    187897 CCCAGGGATGA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79979872 11 +  99152023 CCCAGGGATGA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101768629 11 + 121039945 CCCAGGGATGA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106559012 11 - 171882078 CCCAAGGACGA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3128763 11 +  24206276 CCCAAGGACGA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5838954 90 -  61074082 T
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=196822.000000
s hg38.chr15_KI270850v1_alt        138018 144 +    430880 CTGGTGAGGGCAGGGCCTGGGGCTGGGGGACCCAGGTCCTGGGAGACGCAAGCCCAAAGAGCCCAGGGAGGTTGGGCTTGGGGTGGCAGGAGGTGAGAGCTGATTATGGAGCAGGGAGCCCCAGGAGTCACCTGCCCAAAGTCA
s panTro4.chr15_GL392289_random    134931 144 -    187897 CTGGTGAGGGCAGGGCCTGGGGCTGGGGGACCCAGGTCCTGGGAGACGCAAGCCCAAAGAGCCCAGGGAGGTTGGGCTTGGGGTGGCAGGAGGTGAGGGCTGATTATGGAGCAGGGAGCCCCAGGAGTCACCTGCCCAAAGTCA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79979883 144 +  99152023 CTGGCGAGGGCGGGGCCTGGGGCTGGGGGACCCAGGTCCTGGGAGACACAAGCCCAAAAAGCCCAGGGAGGTTGGGCTTGGGGCGGCAGGAGGTGAGGGCTGAGTATGGAGCAGGGATCCCCAGGAGTCACCCACCCAAAGTCA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101768640 144 + 121039945 CTGGCAAGGGTGGGGCCTGGGGCTGGGAGATCCAGGTCCTGGGAGACGCAAGCCCAGAGAGCCCAGGGAGGTTGGGCTTGGGGCAATAGGAGGTGAGGGCCGAGTATGGAGCAGGGAGCCCCAGGAATCACCTGCCCAAAGTCA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106559023 144 - 171882078 CTGGCAACGGTGGGGCCTGGGGATGGAGTACCCAGGTCCTGGGAGACGCAAGCCCGAAGAGCCCAGGAAGGTCAGGCTTGGGGCAGCAGGAGGTGAGGGCCAAGTATGGAGTGGGGAGCCCCAGGAGTCACCCGCCCAAAGTCA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3128774 144 +  24206276 CTGGCGACGGTGGGGCCTGGGGCTGGGGTACCCAGGTCCTGGGAGACACAAGCACAAAGAGTCCAGGAAGGTCAGGCTTGGGGCAGCAGGAGGTGAGGGCCGAGTATGGAGCGGGGAGCCCCAGGAGTCACCAACCCAAAGTCA
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5838864  90 -  61074082 ----------------------CTGGAGAGCCCAGGTCC--------------------------------TCCGCTTCTGGGTGGCAGAAGGCTAGGGCCAAACCTGGAGCAGGGAGCCCGGGGAGTCACCAGCCCAAAGTCA
i canFam3.chr9                  T 90 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=1500.000000
s hg38.chr15_KI270850v1_alt        138162 1 +    430880 C
s panTro4.chr15_GL392289_random    135075 1 -    187897 C
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79980027 1 +  99152023 C
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101768784 1 + 121039945 C
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106559167 1 - 171882078 C
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3128918 1 +  24206276 C
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e canFam3.chr9                    5838954 0 -  61074082 C
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=791398.000000
s hg38.chr15_KI270850v1_alt        138163 557 +    430880 CCTGGGGT---GATTGGCAAGGGCAGGGACTGGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACTAGGCTTTGGTTGGGGGAGCCCAGAGGGGCTGGGGTTGGGGGGCCCCATCTGGTATGCCTCAGGAGTGGTATGGACTCTGGCACAGGTCTTGTCATCGGAGGGGATCTGTGGCTGGGTT-GGGGGCCATGACCTGGTGTGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACATCAGCGAAATACCAGTGAGCACTGCTCAATGCCTCCAGTCACCTACCAGGCAGCTGTGCAACTGAGCCACAGGTGGCGTAACCAGGGCACCAATGGAACGCAGAATAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGCAGCATGTCCAGAGGGACCTGTGGCATCATAAGGAAAGCTGCCCATGCAACCGCTGTCCCCGC-CCACTCAGAGAAAGGGGAGGGGCC
s panTro4.chr15_GL392289_random    135076 557 -    187897 CCTGGGGT---GATTGGCAAGGGCAGGGACTGGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACTAGGCTTTGGTTGGGGGAGCCCAGAGGGGCTGGGGTTGGGGGGCCCCGTCTGGTATGCCTCAGGAGTGGTATGGACTCTGGCACCGGTCTTGTCATCGGAGGGGATCTGTGGCTGGGTT-GGGGGCCATGACCTGGTGTGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACATCAGCGAAATACCAGTGAGCGCTGCTCAATGCCTCCAGTCACCTACCAGGCAGCTGTGCAACTGAGCCACAGGTGGCGTAACCAGGGCACCAATGGAACGCAGAATAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGCAGCATGTCCAGAGGGACCTGTGGCATCATAAGGAAAGCTGCCCAGGCAACCGCTGTCCCCGC-CCACTCAGAGAAAGGGGAGGGGCC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79980028 557 +  99152023 CCTGGGAT---GATTGGCAAGGGCAGGGACTGGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACTAGACTTTGGTCGGGGGAGCCCAGAGGCGCTGGTGTTGGGGGCCCCAGTCTGGTATGCCTCAGGAGTGGTATGGACTCTGCCACTGGTCTTGTCATCGGAGGGGATCTGTGGCTGGGTT-GGGGGCCATGACCTGGTGCGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACATCAGCAAAATCCCAGTGAGCACTGCTGAATGCCTCCAGTCACCTACCAGGCAGCTGTGCGACTGAACCACAGGAGGCGTAACCAAGGCCCCACTAGAACGCAGAATAGGGGCATGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCCTGGCCAGGCAGCAGCATGTCCAAAGGGACCTGTGGTGTCATAAGGAAAGCTGCCCATACAACCGCTGTCCCCGC-CCACTCAGAGAGAGGGGAGGGGCC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101768785 556 + 121039945 CTTGGGGT---GATTGGCAAGGGCAGGGACTGGGCTCCTTGCTGAAGGGGTGGGGCTGACTGACAAGACTTTGGTCAGGGGAGCCCAGAGGCGCTGGGGTTGGGGGGCCCAGTCTGGTATGCCTCAGGACTGGTATGGACTCTGGCACCGGTCTTGTCATCAGAGGGCGTCTGTGGCTGGGTT-GGGGGCCATGACCTGGGGCGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGCTTTTCCTGACATCGTGGGGTGCGGAGTGGGGCAGGGTTGGGGCCACTTCAGTGAAATCCCAGTGAGCACTGCTGAATGCCTCCAGTCACCTACCAGGCAGCTGTGTGACTGAGCCACAGGAGGCTTAACCAAGGCGCCACTAGAATGCAGAATAGGGGTGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGACAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGCAGCATGTACAGAGGGACCTGTGGCATCATAAGGAAAGTGGCCCATGCAACCGCTGTCCCCGC-CCACTCAGAGAG-GGGGAGGGGCC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106559168 552 - 171882078 CCTGGGGTAAAGATCGGCAAGGGCAGGGATTGGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACAAGAATTTGGTGGGGGGAGCCCAGAGTCGCTGGTGTTGGGGGTCCCATTCCAGTATGCCTGAGGAATAGTATGGGCTCTGGCAATGGTCTTGTCATCGGAGAGGATCTGTGGTTGGGTT-GGGGGCTATGACCTGGTGCATTTTACCTTTTTCTTGGCTGTGGTGAATTTTCCCTGTCGTGTTTTTTCTGACATCATGGGGTGCGGAGGGAGGCGGGGTTGGGGTCACATCAGCGAAATCCCAGTGAGCACGGCTGAATGCCTCCAGTCACCTACCAGGCCGCTGTGCAACTGAGCCAGAGGAGGCGTAACCAGGGCCCCACTAGAACTCAGAAGAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAAGCGTGGCCAGGCAGCAGGGTGTCCAGAGGGACCTGTGGCATCACAAGGAAAGCTGCCCATTCAA---------CCGCTCTACTCAGAAGGAGGGGAGGGGCC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3128919 561 +  24206276 CTTGGGGTAAAGATCGGCAAGGGCAGGGATTCGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACAAGAATTTGGTGGGGGTAACCCAGAGTCGCTGGTGTTGGGGGTCCCATTCCGGTATGCCTGAGAAATAGTATGGGCTCTGGCAATGGTCTTGTCGTCGGAGAGGATCTGTGGCTGGGTT-GGGGGCTATGACCTGGTGCATTTTACCTTTTTCTTGGCTGTGGTGAATTTTCCCTGTCGTGTTTTTTCTGACATCATGGGGTGCGGAGGGAGGCGGGGTTGGGGTCACATCAGCGAAATCCCAGTGAGCACGGCTGAATGCCTCCAGTCACCTACCAGGCCGCTGTGCAACTGAGCCAGAGGAGGCGTAACTAGGGCCCCACTAGAACTCAGAAGAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAAGCATGGCCAGGCGGCAGCATGTCCAGAGGGACCTGTGGCATCACAAGGAAAGCTGCCCATGCAACCACTTTCTCCGCTCTACTCAGAAGGAGGGGAGGGGCC
i chlSab2.chr29                 C 0 C 0
s canFam3.chr9                    5838954 535 -  61074082 ccgggggc---ggcgggcgagggcgggggctgggcagccgg-----ggggcgggACTGGCTGAGACGACTTGGGGTGGGGGGCGCCAAGG-----GGCGTCACGGGG-CTAGCCCCGTGTGCCTCAGGGGCAGCAAAGATTCTGGCCACGGCCCGGCCGTCCGAGGGG-CCTTTGGCTGGGTCAGGGAGCCGCGACCCGGCACGTTTTACCTTTTTCTTGGCCGCAGCCAATTTGCTCTGTCGGGTTTCTTCCGACATCCCGGGACGGGGAGGGGTAAGGGG-GGTGGCCACATCACCGCGATCCCGGCAACCACCGCGGCATCACTTCCGGCAGTCACCGCGCCGGTGTGCGACTGAGCCAGAAAGGGAGGGACCCTAGAGTTTCTAGGTAGCAGCTGGTGGGCGTGGCCTCAATGCTCCAATTCTATTGGCTGGTGAGAAAGATGAACGGGGGAATGGGCGTGGTCAGGTTGCCGC----------GAGCAGGTGGAGTGACAATGAAAGCTGCGCGCGCAGCCTCTGGCCCCGC-CCACTTCGGGGCGGGGGCGGGACC
i canFam3.chr9                  C 0 N 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=107380.000000
s hg38.chr15_KI270850v1_alt        138720 94 +    430880 GCCCACTCTGGGAGAGGGGAAGGGCTGGGTTTTGCTTTAAAACTTTTAAAACTGTAAAAAATAAACTTTAAAAAATATATGTGTATATACTTTA
s panTro4.chr15_GL392289_random    135633 94 -    187897 GCCCACTCTGGGAGAGGGGAAGGGCTGGGTGTTGCTTTAAAACTTTTAAAACTGTAAAAAATAAACTTTAAAAAAtatatgtgtatatacttta
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79980585 94 +  99152023 ACCCACTCTGGGAGAGGGGAGGGGCTGGCTTTTGCTTTAAAAGCTTTAAAACTGTAAAAAATAAACTTTAAAAAAtatgtgtgtgtatacttta
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101769341 94 + 121039945 ACCCACTCTGGAAGAGGGGAGGGGATGGCTTTTGCTTTAAAAGCTTTAAAACTGTAAAAAGTAAACTTTAAAAAATATATGTGTGTATACTTCA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106559720 94 - 171882078 GCCCACTCTGGGAGAGGCAAGGGTCTGGCTTTAGCTTTAAAAGCTTTAAAACTGTAAAAAATAAACTTAAAAATGTATACATGTGTATACTTTA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3129480 94 +  24206276 GCCCACTCTGGGAGAGGCAAGGGTCTGGCTTTTGCTTTAAAAGCTTTAAAACTGTAAAAACTAAACTTAAAAATGTATACATGTGTATACTTTA
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 113866255 79192 - 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=98120.000000
s hg38.chr15_KI270850v1_alt        138814 63 +    430880 TATATAtgtgtgtctgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTATGCAGC
s panTro4.chr15_GL392289_random    135727 63 -    187897 tatatatgtgtgtctgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTATGCAGC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79980679 63 +  99152023 tatatatgtgtgtctgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTATCCAGC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101769435 63 + 121039945 TATATAtgtgtgtctgtgtgtgtgtatctatgtgtTCTTCCAGAGCTGTTTTCATTATCCAGC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106559814 63 - 171882078 TATATAtgtgtgtctgtgtgtgtgtATCTATGCGTTCCTCCAGAGCTGTCTTCATTATCCAGC
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                   3129574 61 +  24206276 TATATATGTGTGTC--TGTGTGTGTATCTATGCGTTCCTCCAGAGCTGTCTTCATTATCCAGC
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                  18316629 49 + 132174527 TATATCTGTGTATCTGTGTGTGT--------------CTTAAAAGCTGTCTTCATTATCCAGT
i calJac3.chr10                 n 79192 n 79192
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=71169.000000
s hg38.chr15_KI270850v1_alt        138877 57 +    430880 TTCTGTGCAAAGTCTGTGATTTTGGCCTATATTTTTCATCTTCAAATGGAGTACAAG
s panTro4.chr15_GL392289_random    135790 57 -    187897 TTCTGTGCAAAGTCTGTGATTTTGGCCTATATTTTTCATCTTCAAATGGAGTACAAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79980742 57 +  99152023 TTCTATGCAAAGTCTATGATTTTGGCCTATATTTTTCATCTTCAAATGGAGCACAAG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101769498 57 + 121039945 TTCTATGCAAAGTCTATGATTTTCACCTGTATTTTTCATCTTCAAATGGAGCACAAG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106559877 57 - 171882078 TTCTATGCAAAGTCTATGATTTTGGACTATATTTTTCATCTTCAAATGGAGTATAAG
i macFas5.chr7                  C 0 I 276
s chlSab2.chr29                   3129635 57 +  24206276 GTCTATGCAAAGTCTATGAGTTTGGCCTATATTTTTCATCTTCAAATGGAGTACAAG
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                  18316678 79192 + 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=275843.000000
s hg38.chr15_KI270850v1_alt        138934 232 +    430880 AATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCCGACTATAGTATCCGACATTCCAATAAGACAAAATAATCACAACAATTTCTCTTTTTTGGAAAAATGTTTGTCTTATTCTCCTACATTATTGTTAAGATTTCTTTTAAA-AACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
s panTro4.chr15_GL392289_random    135847 232 -    187897 AATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAAGGAAGCCGACTATAGTATCCAACATTCCAATAAGACAAAATAATCACAACAATTTCTCTTTTTTGGAAAAATGTTTGTCTTATTCTCCTACATTATTGTTAAGATTTCTTTTAAA-AACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79980799 232 +  99152023 AATTACCAGTATTACCTTAACTGAGACATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCTGACTATAGTATCCGACATTCCAATAAGACAAAATAATCACAATGATTTCTCTTTTTTGGAAAAATGTTTGTCTTATTCTCCTACATTATTGTTAAGATTTCTTCTAAA-AACAAGAAACATGTCGAATATCTTTAAAAACACAAAGCTTTTGg
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101769555 230 + 121039945 AATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCCGACTATAGTATCCAACATTCCAATAGGACAAAATAATCACAATGATT--TCTTTTTTGGAAAAATGTTTGTCTTATTCTTCTACATTATTGTTAAGATTTTTTTAAAA-AACAAGAACCATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106560210 229 - 171882078 aaTTACCAGTATCACCTTAACTGAGATACAGGTCCTATAAAAATGGAAAATTCATAGCATGCTTGATGATTAAGGAAGTAGACTATAGTATCCAACATTCCAATAAGACAAAATAATCACAATGATCTCTCTTTTTTGGAAGAACATTTCTCTTATTCTCCTACATTA---TGAAGATTTTTCTTTTT-AATGATAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
i macFas5.chr7                  I 276 C 0
s chlSab2.chr29                   3129692 230 +  24206276 AATTACCAGTATCACCTTCACTGAGATACAGATCCTATAAAAATGGAAAATTCATAGCATGCTTGATGATTAATGAAGTAGACTGTAGTATCCACCATTCCAATAAGACAAAATAATCACAATGATTTCTCTTTTTTGGAAGAACGTTTCTCTTATTCTCCTACATTA---CGAAGATTTTTTTTTTTAAATGATAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                  18316678 79192 + 132174527 I
e papAnu2.chr7                  102435589 3476 - 162156779 I

a score=2695291.000000
s hg38.chr15_KI270850v1_alt        139166 1681 +    430880 gccgggtgcggtggctcacgcctgtaatgccatcactttgggaggccgaggtgggtggattgcc-tgaggtcaggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaaactagccaggcgtggttgcgggtgcctgtaatcccagctatttgggaggctgaggcaggagaatcacttgaacccaggagatggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagactccatctcaaaag---------------aaataaaataaaatacaaaaTAAGTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAATTACAAGGCCC--------------------------------------------------ATTT--------------------------------------TTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAGCTGAATTTCTCACTTGATACTTGGCTCTCACTTGCAGTCATGAAAACCAAGAATT-TGTTATGTCACTGTGTATTGCTTGTTACCTGAAATCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCACACCAAACTAAGCTTTTTTTCTAGAGCTCTGCAACTTACAGTTAGTATATGAGagcagttctcaaaaatgtagtctctggactagcagctccagcagcacctgggaacttcttataaatacacatcctccggccccaccctggacctgatgaatcagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAACCAGGGATACTATATGTTTT--CTCTATATGAAACAATGACGTGCAATTAAAAGACATAAATCTCCTTCCTGCTCCCACCTTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAACAA-------TCAGAGATTTTGTCTAAATCGCATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTTATCCAATATCATTTATATTCTCTTACATGTGAAGTTTTAGAGAAGGATCTTCACAATGTAAGACTCAGGCACACTAGCAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAAGTGGAATCATTGGCTATATTTTCAAATTGCAATAAACAGGATATTAAAGTTTTGAATTTTTTT-CACCTTCATCCTTCCACGTTAATAGAATTAAGCCAAAATACTT--GTCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATACCTGCAAAGATGAAGAACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAACAAAACTAAACTCTCggctgggagctctagttcatgcc-gtaatcccagcactttggcaagcaaaggtgggaggattacttgaagtcaggaattcaagaccagccttggcagcatagtgaattcacacctctacagaaagtttttaaaattagctgggtgtggcagcacac
s panTro4.chr15_GL392289_random    136079 1683 -    187897 gccgggtgcggtggctcacgcctgtaatgccatcactttgggaggccgaggtgggtggattgcc-tgaggtcaggagttcgagaccagcctggccaacatgaagaaaccctgtctctactaaaaatagaaaaactagccaggcgtggttgcgggtgcctgtaatcccagctatttgggaggctgaggcaggagaatcactggagcccaggagatggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagactccatctcaaaag---------------aaataaaataaaatacaaaataaGTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAAATACAAGGCCC--------------------------------------------------ATTT--------------------------------------TTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATCACTTGCAGTCATGAAAACCAAGAATT-TGTTATGTCACTGTGTATTACTTGTTACCTGAAATCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCACACCAAACTAAGCTTTTTTTCTAGAGCTCTGCAATTTACA-TTAGTATATGAGagcagttctcaaaaatgtagtctctggactagcagctccagcagcacctgggaacttcttataaatacacattctcaggccccaccctggacctgatgaatcagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAACCAGGGATACTATATGTTCTGTCTCTATATGAAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTGCTCCCACCTTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAGGAAAACAA-------TCAGAGATTTCGTCTAAATCGCATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTTATCCAATATCATTTATATTTTCTTACATGTGAAGTTTTAGAGAAGGATCTTCACAATGCTAGACTCAGGCACACTAGGAGTTCTATAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAAGTGGAATCATTGGCTATATTTTCAAATGGCAATAAACAGGAAATTAAAGTTTTGAATTTTTTTTCACCTTCATCCTTCCAAGTTAATAGAATTAAGCCAAAATACTT--GTCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATACCTGCAAAGATGAAGAACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAACAAAACTAAACTCTCggctgggagctctagttcatgcc-gtaatcccagcactttggcaagcaaaggcgggaggattacttgaagccaggaattcaagaccagccttggcagcatagtgaattcacacctctacagaaagtttttaaaattagctgggtgtggcagcacac
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79981031 1694 +  99152023 gccgggcacggtggctcatgcctgtaatgccatcattttgggaggccgaggtgggtggatcacc-tgaggtcaggagttcgagaccagcctggccaacatgaagaaaccctgtctctactaaaaatacaaaaactagccaggcgtggtggtgggtgcctgtaatcctagctatttgggaggctgaggcaggacaatcacttgaacccagaagacggaggttgcagtgagccaagctcatgccactgcactccagcctgggcgacagagcaagactccatctcaaaag----------aaataaaataaaataaaataCAAAATAAGTAAGAACACAAAGCTTTCAATTTAATAAGCACTTAAAGTTCTTTACTGGTTTAAGAGAAATACAAGGCCC--------------------------------------------------ATTT--------------------------------------TAACAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACCTGGCTACGCCTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACTGTGTATTGCTTGTTACCTGAAATCCACACTAGGCTGGGATCAAGGGTTGAATTTTTCATGATTTTCTCCATAACCTGTCTGCTTCTTATCCCACACCAAACTAAGCTTTCTTTCTAGAGCTCTGCAATTTACAGTTAGTATATGAGagtggttctcaaaactgtagtctctggactagcagctccagcagcacctgggaacttcttataaatacaaattctcaggccccaccctggacccgatgaatcagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgTTCAAGAATCTCTGGCATACAGCAGGTAGTAAAAT-TGTTTCCTTCTGTAGGTCCAAAACCAGGGATACTATATGTTCTGTCTCAATATGAAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTGCTCCCACCCTCCAGCCAATGCGTCTTATTTTTATGAGTTAAATAAGAAAACAAGTG----GCAGAGATTTCATCTAAAACCCATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTCATCCAATATCATTTATATTCTCTTACATGTGAAGTTTTAGAGAAGGATCGTCACAATGTAAGACTCAGGCACACTAGGAGTTCCATAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAAGTAGAGTCATTGGCTATATTTTCAAATTGCATTAAACAGGAAATTAAAGTTTTGAATTTTTTTTCACCTTCATCCTTCCAAGTTAATAGAAGTAAGCCAAAATACTCCAGTCTTCCGAAGCCTCTAGCGAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAACGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATACCTGCAAAGATGAAGAACTAAACAGTTCCATCTGTTCAATACTGAAACAACAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAACAAAACTAAACTCTCGgccgggagctctagttcatgcc-gtaaccccagcactttggcaagcaaaagcgggaggattacttgaagtcaggagttcaagaccagcctcagcagcatagtgaattcacatctctacaaaacgttttaaaaattagctgggtgtggcagcacTC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101769785 1707 + 121039945 gccgggtgtggtggctcatgcctataatgccgtcactttgggaggccgaggtggttggatcacc-tgaggtcaggagtttgagaccagcctggccaacatgaagaaaccctgtctctactaaaaatacgaaaactagccaggcgtggtggtgggtacctgtaatcccagctatttgggaggctgaggcgggagaatcacttgaacccaggagacggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagactccatctcaaaacaaaacaaaacaaataaaataaaaTAAAATACAAAATAACTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAAATACAAGGCCC--------------------------------------------------ATTT--------------------------------------TAATAGAATCACTCGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACTGTGTATTGCTTGTTACCTGAATTCCACAGTAGGCTGGAATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTGATCCCACACCAAACTAAGCTTT-TTTCTAGAGCTCTGCAATTTACAGTTAGTATATGAGagtggttctcaaaaatgtagtctctggactagcagctccagcagcacctgggaacttcttat-aatacaaattctcaggccccaccctggatctgatgaatcagaaactcctcagtagggctcagcaatctgtgctgcagtaatccctccagctgTTAAAGAGCCTCTGGCACACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACTATATGTTCTGTCTCGGTATGAAACAATGACACGCAATTAAAAGACATAAACCTCCTTCCTGCTCCCGCCCTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAACATGTGGCAATCAGAGATTTCATCTAAAACATTTATTTACAGGTATCAGTTCTCATCCAGCCTGATCTCATCCAATATCATTTATATTCTCTTACATGTGAAGTTTTAGAAAAGGGTCTTCACAATGTAAGACTCAGGCACACTAGGAGTTCTATAATAAAACAGCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAGGTGGAATCATTGGCTATATTTTCAAATTGCATTCAACAGGAAATTAAAGTTTTGAATTTTTTTTCACTTTCATCCTTCCAAGTTAATAGAATTAAGCCAAAATACTCCAGTCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATATCTGCAAAGATGAAGCACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAACAAAACTAAACTCTCAgccgggagctctagttcatgca-ataatcccagcactttggcaagccaagttgggaggatgacttgaagtcaggagttcaagaccagtctgggcagcatagtgaattcacatctctacaaaaagtttttaaaattagctggatgtggcagcacac
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106560439 1682 - 171882078 gccaggtgcggtggttcacacctgtaatgccatcactttgggaggccgaggtgggtggatcgcc-tgaggtcaggagttcaagaccaacatggccaacatgatgaaaccctgtctgtactaaaaatacaaaaactagccaggcgtggtggtgggtgcctgtaatcccagctatttggtcggctgaggcaggagaattacctgaacccaggagacggaggttgcagtgagccaagctcacgcccctgcacttcagcctgggcaacagagcaagactccatctcaaaag----------aaataaaataaaataaaacacaaaaTAAGTAAGAACACAAAGCTTTCAATTTAATAAGCACTTAAAACTCTCTACTTGTTTAAGAGAAATACAAGTCCC--------------------------------------------------AGTA--------------------------------------TTCTAG-ATCACCTGACCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGATTTGCAATCATGAAAACCGAGAA-----TTATGTCACTGTGTACTGCTTGTTACCTGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCAGACCAAACTAAGTTTT-TTTCTAGAATTCTACAGTTTACAATTAATAGACAAGagtggttttcaaa-atgtagtctatggactaacagcaccagcagcacctgagatctttttacaagtgcaaattctcaggtcccaccctgggcctggtgaatcggaaactctggagtagggctcagcagtctgtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATACGGCAGGCAGAAAAATATGTTTCCTTCTGTAGGTCC-AAGCCAGGGATACCATATGTTCTGCCTTGTTATACAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTACTCCCACCCTCCATCCAACGTGTTTTATTTTTATGAGTTCAATTAGAAAACAAGTGGCAATCAGAGATTTAGTCTAAAATATATATTTACAAGTGTCAGTTCTCATCCAGCCTGATCTCATACAAAACCATTTACGTCCTCTTACACCTCAAGTTTGAAAAATGTATCCTCACAATGTGAGACTCAGGCACACTAGCAGTTCTATCATAAAACACCAAGTAGATTGGAATGTCCAACCTTACTAGAGAAGAAAAGTGGAATCACTGGCTATATTTCCAAATTGCATTCAACAGGAAA-------TTTGAGTTTTTTT-CACCTTCATACTTCCAATTTAATAGAATTAAACCAGAATACGCCATTCTTTCAAAGCCTCTAGCCAGGCAAAGTTTTACTGTATTATTTCTTGCTTTCC-ATGGATATAAAGCAGATTCCTGGTAGGCACATTTTGTATACCTGCAAAGATGCAGGACTAAACAGTTCCATCTGTTCAACATTGAAACAAAAGTCCTGTAAACCTCGGATGGTGAGCGCAATACTTCAGCTTTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACGCCACTAGCAATCAAAACTAAACTCTCgactaggagcagtagttcatgcctgtaatcccagcactttggcaaactaaggtgggaggattacttgaagtcaggagttcaagattaacctgggcagcatagcgaattcacgtctccacaaaaaattttaaaaattagctgggcctggtggcacac
i macFas5.chr7                  C 0 T 95623
s papAnu2.chr7                  102439065 1750 - 162156779 GCCAGGCCTGATGGTTattgcctacaatcccagcactttgggaggctgaggcgggtagatcacc-tgagctcaggagttcaagaccagc-tggccaacatcatgaaaccctgtctctactaaaaatacaaaaactagctgggcatggtggcagacacctgtaatcccagtcacttgggagcctgaggcaggggaatcgcttgaaccagggaggtggaggttgcagtgagccaaaattgtgccactgcatttcagcctgagcaacagaataagactcagtctctaaat----------aaat--------------cattaaataaat----acacaatgcTTTCCATTTAATAAGCACTCAAAGCcctttatcagtttaaaataaatacaagccCCTTGTAAAGTAAGGCTAAATGTTAAGTGATGCGGGAGAGGAAAAGGACATAAGTAACTCCTACTCTCATGAGGTTAATGACTAAATCCTATTTTTCTAGAATCACCTGGCCTCTCTAAGCCCTGTGAGTGAAACTGAATTTCTCACTCAATACCTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACCGTGTATTGCTTGTAACCTGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTGTTCCATAACCTGTATGCTTCTTATCCCAGACCAAACTAAGCTTT-TTTCTAGAGTTCTGCAATTTACAGTTAGTATATAAGAGTGGTTTTCAAACATGTAGTCTCTGGACCAGCAGCTCTAGCAGCACCTGGGAACTTCTtataaatgcaaattctcaggccccaccctggatctgatgaatcagaaactctggactAGGGCTCAGCAGTCTGTGCTGCAGTAGTCCCTCCAGGTGTTCAAGAACCTCTGGCATACAGCAGGTAGTAAAATGTGTTTCCTTCTGTAGATCCAAAGCCAGGGATACTATATGTTCTGTCTCGATATGAAAAAATGACATGCAATTAAAAGACGTATATCTCCTTCctactcccaccctccatccaatgtgttttatttttatgagttaaataagaaaatgagtgGCAATCAGAGATTTAATCTAAAACGTATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTCATCCAATATCATTTATATCCTCTTATGtgtaaattttagaaaa-ggaTCTTCACAATGTAAGACTCAGGCATACTAGGAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAAATTACTGGAGAAGAAAACTGGAATCATTggttatattttcaaattgcatTCAACAGCAAatttaagttttgaattttttt-cacctTCAT-CTTCC-----AATAGAATTAAGCCAAAATACTCCAGCCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCAATGGCTATAAAGCAGACT---------CACATTTTGTATAGTTGCAAAGATGCAGACCTAAACAGTTCCATCTGttcaatattaaaacaaaagtcCTGTAAACCTCAGATGGTGAGTGTAATACTTCACCATTAGCCCCAAAGCCTCAAATGTGAAAAGATACCAAGAACACCACTAGCAATCGAAAGTAAACTCTTGGCCAGGAGCACTAGTtcatgcc-gtaatcccagcactttggcaagccaaggtgggaggattacttgaagtcaggagttcgagaccagtctgggcagcatagtgagttCACATAtctataaaaagttttaaaaattagctgggtgtgtcaGCAcac
i papAnu2.chr7                  I 3476 C 0
s chlSab2.chr29                   3129922 1671 +  24206276 gccgggtgtggtggttcatgcctgtaatgccatcactttgggaggccgaggtgggtggatcgccttgaggtcaggagttcaagaccaacctggccaacatgatgaaaccctgtctgtaccaaaaatacaaaaactagccaggcgtggtggtgggtgcctgtaatcccagctattcggtcggctgaggcaggagaattacctgaacccaggagacggaggttgcagtgagccaagctcacgcccctgcacttcagcctcggcaacagagcaagactccatctcaaaag----------aaataaaattaaataaaacacaaaaTAAGTAAGAACACAAAGCTTTCAATTTAATAAACACTTAAAACTCTCTAGTTGTTTAAGAGAAATACAAGTCCC--------------------------------------------------AGTA--------------------------------------TTCTAG-ATCACCTGACCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGATTTGCAATCATGAAAACCAAGAA-----TTATGTCAC-------TGCTTGTTACCTGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCAGACCAAACTACGTTTT-TTTCTAGAATTCTACAATTTACAGTTAATAGAC--Gagtggttttcaaa-atgtagtctatggactaacagcaccagcagcacctgagatcttttcataagtgcaaattctcaggtcccaccctggacctggtgaatcggaaactctggagtagggctcagaagtctgtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGCAGAAAAATATGTTTCCTTCTGTAGGTCC-AAGCCAGGGATACCATGTGTTCTGCCTTGTTATACAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTACTCCCACCCTCCATCCAACGTGTTTTATTTTTATGAGTTCAATTAGAAAACAAGTGGCAATCAGAGATTTAGTCTAAAATATATATTTACAAGTGTCAGTTCTCATCCAGCCTGATCTCATACAAAACCATTTACGTACTCTTACACCTCAAGTTTGAAAAATGTATCTTCACAATGTGAGACTCAGGCACACTAGCAGTTCTATCATAAAACAACAAGTAGATTGGAATGTCCAACCTTACTAGAGAAGAAGAGTGGAATCACTGGCTATATTTCCAAATTGCATTCAACAAGAAA-------TTTGAGTTTTTTT-CACCTTCATACTGCCAATTTAATAGAATTAAACCAGAATACACCATTCTTTCAAAGCCTCTAGCCAGGC--AGTTTTACTGTATTATTTCTTGCTTTCC-ATGGATATAAAGCAGATTCCTGGTAGGCACATTTTGTATACCTGCAAAGATGCAGGACTAAACAGTTCCATCTGTTCAGCATTGAAACAAAAGTCCTGTAAACCTCGGATGGTGAGTGCAATACTTCAGCATTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACGCCACTAGCAATCAAAACTAAACTCTCAACTAggagtagtagttcatgcctgtaatcccagcactttggcaaactaaggtgggaggattacttgaagtcaggagttcaagattaacctgggcagcatagcgaattcacgtctccacaaaaaatttt-aaaattagctgggcgtggtggcacac
i chlSab2.chr29                 C 0 n 0
e calJac3.chr10                  18316678 79192 + 132174527 I

a score=1521230.000000
s hg38.chr15_KI270850v1_alt        140847 1219 +    430880 TTCCTGGGGCAGATGTGCCATTGCTGGAAACTTCTCTATGGAGAGTACCAAGTACTTCTACCTGTAGCATTTTCCCTGGCTGGAATCCTGCAATTATCACAGTAGCCCGAGATCCAAGAAGGCAGAGCAGGAGCATCCTGTCCCCTCCCCAGCAGGTGCAAGGGAGGCTGGGGGGTGAGGCACAAGCCCGTGGGAGGGTGAGGAGCAGGAGGGATGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCAAATGTCTATTACAGGTTAAATTAcagaagtatttcagattttgga--tttttttcagattttggaattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaatctggccttcgaacatcatgtcggcactcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatgctGTATTATCTTCTGAATGAGGCCACTCATTCAGGAAAGCCCAGAGCTTGGGGACGTGGAGCTGCAGACCAAAGAGGTGATTTCTGTAGTGGCTTTCAGTGCGGAAGGGCCTACAAAGTGGTTTAAAGCAAGCCACAAAATAGGAAACCCAATATTTAGCTAATGGAACTCTGATAAAACCTGCTCAAGATGTCTGTCTCTACTAATTCAGATGGAGCCAAGCCAAAGCATCATTATTATTTTAAAAAGGCACCAATCCCTCTGCAAAAGCACTGAATTATATCATGATACAATCATCAATTGTACCATGAATCACCATCAGCGGTGGTCTTTTAGGGATATGAAGAAGGGGTTTTCACAATACATCGCATGACACACCATCTTCCAAATCTCTAAACATTTCTCTCCACAGCCCAGTCCTCTCCATAGTTGTCCAAATCCCTCCCTCTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTATATCCCGCCCTCCTCTTCTTGGACCATCTGGGAAGCCCCCTGCTTCCCCAGGGTGTCCCCTCCTCCCCTTCTGGGATCAGTCATCTTTCCTCAAATGGACCAGTTCGGCCTCTCTTAGTTTCTCCAACTCTGCATCTCAACCTTTCTCCCTTCACTACACAATAATGTCCAGGAGGCAAAGAGCCCACAAACCTGGGAACCTCCCTTTCCAGAAGGGAGGTTCTGGAATGACTACAAATATTTGGTTATGATTTTCTTCCCT
s panTro4.chr15_GL392289_random    137762 1218 -    187897 TTCCCAGGGCTGCTGTGCCATTGCTGGAAACTTCTCTGTGGAGAGTACCAAGTACTTCTACCTGTAGCATTTTCCCTGGCTGGAATCCTGCAATTATCACAGTAGCCTGAGATCCAAGAAGGCAGGGCAGGAGCATCGTGTCCCCTTCCCAGCAGGTGCAAGGGAGGCTGGGGGGTGAGGCACAAGCCAGTGGGAGGGTGAGGAGCAGGAGGGATGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAAATTAcagaagtatttcagattctgga--tttttttcagattttggaattcgaaaatctgaaatccaaaaggctccaatgagcatttcctttgaatctggccttcgaacatcatgtcggcactcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatgctGTATTATCTTCTGAATGAGGCCACTCCTTCAGGAAAGCCCAGAGCTTGGGGACGTGGAGCTGCAGACCAAAGAGGTGATTTCTGTAGTGGCTTTCAGTGCAGAAGGGCCTACAAAGTGGTTTAAAGCAAGCCACAAACTAGGAAACCCAATATTTAGCTAATGGAACTCTGATAAAACCTGCTCAAGATGTCTGTCTCTACTAATTCAGATGGAGCCAAGCCAAAGCATCATTATTATTTTAAAAAGGCACCAATCCCTCTGCAAAAGCACTGAATTATATCATGATACAATCATCAATTGTACCATGCATCACCATCAGCGGCGGTCTTTTAGGGATATGAAGAAGGGGTTTTCACAATACATCGCATGACACACCATCTTCCAAATCTCTAAACATTTCCCTCCACAGCCCAGTCCTCTCCATAGTTGTCCAAATCCCTCCCTCTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTATATCCCGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCCCCGCTTCCCCAGGGTGTCCCCTCCTCCCCTTCTGGGATCAGTCATCTTTCCTCAAATGGACCAGTTCGGCCTCTCTTAGTTTCTCCAACTCTGCATCTCAACCTTTCTCCCTTCACTACACAATAATGTCCAGGAGGCAAAGAGCCCACAAACCTGGGAACCTCCCTTTCCAGAAGGGAGGAGA-GAGGTGACTACAAATATTTGGTTATGATTTTCTTCCCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79982725 1217 +  99152023 TTCCCGGGGCTGCTGTGCCATTGCTGGAACCTTCTCTATGGAGAGTACCAAGTACTTCTACCTGTAGCGCTTTCCCTGGCTGGAATCATGCAGTTGTCACAGTAGCCCGAGATCCAAGAAGGCAGGGCAGGAGCATCGTTTCCCCTTCCCAGCAGGTGCAAGGGAGGCTGGGGGGTGAGGCACAAGCCTGTGGGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTCGCTGCCTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAAATTAcagaagtatttcagattttgga--tttttttcagattttggaatttgaaaatctgaaattcaaaattctccaatgagcatttcctttgaacctggccttcgaacatcatgtcggcactcaaacggttttggattttgaagcatttcagattttggattttcggatgagggatgctGTATTATCTTCTGAATGAGGCCACTCATTCAGGAAAGCCCAGAGCTTGGGGACATGGAGCTGCAGGCCAAAGAGGTGGTTTCTGAAGTGGCTTTCAGTGCGGAAGGGCCTACAAAGCTGTTTAAAGCCAGCCACAAAATAGGAAACCCAATATTTAGCTAATGGAACTCTGATAAAACCTGCTCAAGATGTCTGTCTCTACTAATTCAGATGGAGCCAAGCCAACGCATCATTATTGTTTTAAAAAGGCACCAATCCCTCTGCAAAAGCACTGAATTGTATCATGATACAATCATCAATTGTACCATGAATCACCATCAGTGGTGGTTTTTTAGGAATATGAAGAAGGGGTTTTCACAATACATCGCATGACACACTATCTTCCAAATCTCTAAACATTTCTCTCCACAGCCCAGTCCTCTCCATAGTTGTCCAAATCCCTCCCTCTTTTCTCTTTTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTATATCCCGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCCC-GCTCCCCCGGGGTGTCCCCTCCTCCCCTTCTGGGTTCACTCATCTTTCCTCAGATGGACCAGTTTGGCCTCTCTTAGTTTCTCCAACTCTGCATCTCACCCTTTCTCCCTTCTCTACACAATAATGTCCAGGAGGCAAAGAGCCCACAAACCTGGGAACCTCCCTTTCCAGAAGGGAGGAGA-GAGGTGACTACAAATATTTGGTTATGATTTTCTTCCCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101771492 1192 + 121039945 TTCCTGGGGCTGCTGTGCCATTGCTGGAACCTTCTCTGTGGAGAGTACCAGGTACTTCTACCTGTAGCACTTTCCCTGGCTGGAATCCTACAATTGTCACAGTAGCCCAAGATCCAAGAAGGCAGGGCAGGAGCATCATGTCCCCTTCCCAGCAGGTGCAAGGGAGGCTGGGGAGTGAGGCACAAACCTGTGGGAGGGTGAGGGGCAGGAGGGGTGCATGATGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAAATTAcataagtatttcagattttgga--tttttttcagattttggaattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaaccaggacttcgaacatcatgtcggcactcaaacagttttggatgttgaagcatttcagatttgggatttttggatgagggatgctGTACTATCTTCTGAATGAGGCCACTCATTCAGGAAAGTCCAGAGCTTGGGGACATGGAGCTGCAGGCCAAAGAGGTGATTTCTGAAGTGGCTTTCAGTGCGGAAGGGCCTACAAAGTAGTTTAAAGCAAGCCACAAAATAGGAAACCCAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTGTCTCTACTAATTCAGATGGAGCCAAGCCAACGCATCATTACTATTTTAAAAAGGCACCAATCCCTCTGCAAAAGCACTGAATTGTATCATGA-----------------------ATCACCATCAGTGGTGGTTTTTTAGGGATATGAAGAAGGGGTTTTCACAATACATCGCACGACACACCATCTTCCAAATCTCTAAACATTTCTCTCCACAGCCCAGTCCTCTCCATAGTTGTCCAAATCCCTCCCTCTTTTCTC---TTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTATATCCCGCCCTCTGCTTCTTGGACCACCTGGGAAGCCCCCCGCTTCCCCGGGGTGTCCCCTCCTCCCCTCCTGGGATCACTCATCTTTCCTCAAATGGACCAGTTTGGCCTCTCTTAGTTTCTGCAACTCTGCATCTCAACCTTTCTCCCTTCACTATACAATAATGTCCAGGAGGCAAAGAGACCACAAACCAGGGAACCTCCCTTTCCAGAAGGGAAGAGA-GAGGGGACTACAAATATTTGGTTGTGATTTTCTTCCCT
i nomLeu3.chr6                  C 0 I 319
s papAnu2.chr7                  102440815 1190 - 162156779 ttcctggggctgctgtgcCATTGCTGGAATCTGCTCTATGGAGAGTACTGAGTACTTCTACCTGTAGCACTTTCGCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGAGCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGCGagtgcaagggaggctggggggTGATGCACAAGCCTGTGGGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAACTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAAATTACAGAAGTATttcggatttcaga--ttttttgcaGATTTTGGAATtcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaacctGGCCTTCGAACATCATATCGGCGCTCAAACAGTTttggattttgaagcatttcagattttgggttTTCAGATGAGGGATGCTGTATTATCTTCTGAATGAGGCCACTCATTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAGAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCACAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGTTCAAGATGTCTG--TCTACTGACACAGATGGAGCCAAGCCAATGCATTATTATCATTTGAAAAAGGCACCAATCCCTCTGCAAAAGCACTGAATTGTATCATGA--------------------------ATCATCGCTGGTGGTTTTTTAGGGATATAAAGAAGGTGTTTTCACAATAGATCGCACAACACACTATCTTCCAAATCTCTAAACATTTCTCTCCCCAGCCCAGTCTTCTTCATAGTTGTCCAAATcccccccTCTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTGTATCCTGCCCTCCCCTTCTTGGACCACCGGGGAAGCCCCCTGATTCCCCAGGgtgtcccctcctcccctcctgggaTCCCTGATCTTTCCTCAAATGGAGCAGTTTGGCCTCTCTCAGTTTCTCCAACTCTGCAGCTCAACCTTTCTTCCTTCACTACATAATAATGTCCAGGAGGCAAAGAGCCCACAAACCAGGGAACCTCCCTTTccagaagggaggaga-gaggtgACTACAAATATATGGTTATGATTTTCTTCCCT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20308620 1192 -  24206276 TTTCCGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGAGTACTGAGTACTTCTACCTGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGTGGGTGCAAGGGAGGCCGGGGGGTGATGAACAAGCCTGTGGGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAACTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAAATTAcagaagtatttctgatttcagattttttttacagattttggaattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaacctggtcttcgaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatgcCGTATTATCTTCTGAATGAGGCCACTCACTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAAAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCACAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTG--TCTACTAACACAGAtggagccaagccaacgcattattatcatttgaaaaaggcaccaatccctctgcaaaagcactgaattgtatcatga--------------------------atcatcgctggtggttttttagggatataaagaaggtgttttcacaatagatcacacaacacactatcttccaaatctctaaacatttctctccccagcccagtcttctccatagttgtccaaatcccccgctcttttctcttgttgtctccaaaactcaaaaccatgctctgactttctgtatcctgccctccccttcttggaccacctgggaagccccctggttccccagggtgtcccctcgtcccctcctgggatccctgatctttcctcaaatggagcagtttggcctctcttagtttctccaactctgcatctcaacctttcttccttcactacacaataatgtccaggaggcaaagagcccacaaaccagggaacctccctttccagaagggaggaga-gaggtgaCTACAAATATGTGGTTATGATTTTCTTCCCT
i chlSab2.chr29                 T 85275 C 0
e calJac3.chr10                  18316678 79192 + 132174527 I
e macFas5.chr7                  106562121 95623 - 171882078 T

a score=191609.000000
s hg38.chr15_KI270850v1_alt        142066 165 +    430880 GCCACGCCTGTTTTCATGGGCAGTGCTGAGCCCCGGTCCTGGCAGAGCTCAGAACCAGGCTCTCATGAGCTGGGGCAAGTGGGGCCTAGGGAACCTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGCTGCCCTGCTGATTTggctca-tgcaacctct-cctcct
s panTro4.chr15_GL392289_random    138980 165 -    187897 GCCACGCCTGTTTTCATGGGCAGTGCTGAGCCCCAGTCCCGGCAGAGCTCAGAACCAGGCTCTCATGAGCTGGGGCAAGTGGGGCCTAGGGAACCTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGCTGCCCTGCTGATTTggctca-tgcaacctct-cctccc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79983942 165 +  99152023 GCCACGCCTGTTTTCATGGGCAGTGCTAAGCCCCAGTCCTGGCAGAGCTCAGAACCAGGCTCTCATGAGCTGGGGCAAGTGGGGCCTAGGGAGACTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGCTGCCCTGCTGATTTggctca-tgcaacctct-cctccc
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101773003 167 + 121039945 GCCACGCCCGTTTTCATGGGCAGTGCTGAGTCCCCGTCCTGGCAGAGCTCAGAACCAGGCTCTCATGAGCTGGGGCAAGTGGGGCCTAGGGAGCATCTGGGTTGAGGACCTTGTATCTCACTCTGCAGCTGCCCTGCTGATTTggctcactgctacctctgcctccc
i nomLeu3.chr6                  I 319 C 0
s papAnu2.chr7                  102442005 166 - 162156779 GGCATGACTGTTTCCATGGGCAGCGCTAAGCCCCAGTCCTGGCAGACCTCAGAACCAGGCTCTCTTGAGCTGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAAGATCTTGCGTACTACTCTGCAACTGCCCTGctgatttggctcactgcaacctctgcctca-
i papAnu2.chr7                  C 0 I 1
s chlSab2.chr29                  20309812 166 -  24206276 GGCATGACTGTTTCCATGGGCAGTGCTAAGCCCCAGTCCTGGCATACCTCAGAACCAGTCTCTCTTGAGCTGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAGGATCTGGCATACTACTTTGCAACTGCCCGGCTGATTTggctcactgcaacctctgcctca-
i chlSab2.chr29                 C 0 I 1
e calJac3.chr10                  18316678 79192 + 132174527 I
e macFas5.chr7                  106562121 95623 - 171882078 T

a score=275037.000000
s hg38.chr15_KI270850v1_alt        142231 151 +    430880 gggctcaagcgatccttctacatcggtctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtacagatggggtttcacctgtagcccaggctggtctcgaa-tcctgggctctagtgatctaccctcctc
s panTro4.chr15_GL392289_random    139145 152 -    187897 gggctcaagcgatccttctacatcggtctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtacagatggggtttcacctgtagcccaggctggtctcgaactcctgggctctagtgatctaccctcctc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79984107 152 +  99152023 gggctcaagcgatccttctacctcggcctcccaagtagctgggatttgggctaccaagtttggctaatttttgtatcttttagtacaggtggggtttcacctatagcccaggctggtctcgaactcctgggctctagtgatctaccctcctc
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101773170 152 + 121039945 gggctcaagcaatccttctacctcggcctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtgcagacggggtttcacctgtagcccaggctggtctcgaactcctgggcttgagtgatctaccctcctc
i nomLeu3.chr6                  C 0 I 7475
s macFas5.chr7                  106466498 152 - 171882078 cggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i macFas5.chr7                  T 95623 C 0
s papAnu2.chr7                  102442172 152 - 162156779 cggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcaaactcctggactcgagtgatttatcctcctc
i papAnu2.chr7                  I 1 C 0
s chlSab2.chr29                  20309979 152 -  24206276 cggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i chlSab2.chr29                 I 1 C 0
e calJac3.chr10                  18316678 79192 + 132174527 I

a score=228474.000000
s hg38.chr15_KI270850v1_alt        142382 176 +    430880 agcctcccaaagtgctgggattacaggtgtgagccactgcgcccggccTTgtgccagcttttaaatatcaacaaggacaaattagagaacagtggaagagggtgagcagcatgatgaggtgatacagaaataatttcacatgaagaacTGGGCATGCCTGGC---------TTTTTTTTTTTTTT
s panTro4.chr15_GL392289_random    139297 179 -    187897 ggcctcccaaagtgctgggattacagatgtgagccactgcacccggccTTgtgccagcttttaaatatcaacaaggacagattagagaacagtggaagagggtgagcagcatgatgaggtgatacagaaataatttcacatgaagaactgggcatgcttggcc------tTTTTTTTTTTTTTTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79984259 185 +  99152023 agcctcccaaagtgctgggattacaggtgtgagccactgcgcccggccTTATGCCAGCTTTTAAATATCAACAAGGACAGATTAGAGACCAGTGGAAGAGGGTGAGCAGCATGATGAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCATGCTTAGCCCttttttttttttttttttttt
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106466650 176 - 171882078 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccTTGTGCCAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATAAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCATGCTTGACC--------ttttttttttttt-
i macFas5.chr7                  C 0 I 17
s papAnu2.chr7                  102442324 176 - 162156779 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccttgtgccAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATAAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCAtgcttgacc--------ttttttttttttt-
i papAnu2.chr7                  C 0 I 8
s chlSab2.chr29                  20310131 176 -  24206276 agcctcccaaagtgctgggattacaggtgtgagccactgcacccggccTTGTGCTAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATGAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCATGCTTGACC--------ttttttttttttt-
i chlSab2.chr29                 C 0 I 337
e calJac3.chr10                  18316678 79192 + 132174527 I
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=24414.000000
s hg38.chr15_KI270850v1_alt        142558 42 +    430880 AAGCTATTCTGGGTTGGATGCTGAGGCTCACACCTGTAAgcc
s panTro4.chr15_GL392289_random    139476 42 -    187897 AAGCCATTCTGggttgggtgctgaggctcacacctgtaagcc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79984444 42 +  99152023 AAGCCATTCTGggttgggtgctggggctcacgcctgtaagcc
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106466843 34 - 171882078 AAGCCATTCTGggctgggcacaggggctcatgcc--------
i macFas5.chr7                  I 17 C 0
s papAnu2.chr7                  102442508 34 - 162156779 aagccattctgggctgggcacaggggctcatgcc--------
i papAnu2.chr7                  I 8 C 0
e calJac3.chr10                  18316678 79192 + 132174527 I
e chlSab2.chr29                  20310307 337 -  24206276 I
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=12170.000000
s hg38.chr15_KI270850v1_alt        142600 9 +    430880 tgtaatccc
s panTro4.chr15_GL392289_random    139518 9 -    187897 tgtaatccc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79984486 9 +  99152023 tgtaatccc
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106466877 9 - 171882078 tgtaatccc
i macFas5.chr7                  C 0 I 291
s papAnu2.chr7                  102442542 9 - 162156779 tgtaatccc
i papAnu2.chr7                  C 0 I 291
s chlSab2.chr29                  20310644 9 -  24206276 tgtaatcct
i chlSab2.chr29                 I 337 C 0
e calJac3.chr10                  18316678 79192 + 132174527 I
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=412945.000000
s hg38.chr15_KI270850v1_alt        142609 347 +    430880 agcactttgggaggccgaggtgggtggatcacctgaagtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctggaattggtggcatgtgcctgtaattccagctactcgggcagctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgatatcgtgccattgcactccagcctgggcaacaagagtgaaactctgcctcaaaaaaaaaaaaaaaaa------------------gaaagaaa---gaaaaGAAAATATATCTATGCACCAGAGCTCAACACTAGGTTAGGAGCATTTCTGAGATTTGGAGCTATT
s panTro4.chr15_GL392289_random    139527 368 -    187897 agcactttgggaggccgaggtgggtggatcaccggaagtcaggagttcaagaccagcctggccaaaatggtgaaaccccgtctctactaaaaatacaaaaaattagctgcaattggtggcatgtgcctgtaattccagctactcgggcagctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgatatcgtgccattgcactccagcctgggcaacaagagtgaaactctgcctcaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaagaaaaaagaaaagaaaaTATATCTATGCACCAGAGCTCAACACTAGGTTAGGAGCATTTCTGAGATTTGGAGCTATT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79984495 350 +  99152023 agcactttgggaggccgaggtgggcggatcacctgaagtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaataaaaaaaattagccgggcgtggtggcgtgtgcctgtaattccagctactcgggtagctgaggcaggagaatcgcttgaacctgggaggcagaggttgtagtgagctgatatcgtgccattgcactccagcctgggcaatgagagtgaaactctgcctcaaaaaaaaaaaaaaaag---------------aaagaaagaaa---GAAAAGAAAATATATCTATGCACCAGAGCTCAACACTAGGTTAGGAGCATTTCTGAGATTTGGAGCTATT
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106467177 336 - 171882078 agcactttgggaggccgaggcaggtggatcacctgaagtcaggagttcgagaccagcctagtcaacatggtgaaaccccatttctactaaaaatacaatacattagccgggcatggtggcgtgtgcttgtaattccagctactcgggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgcactccagcctgggcaac--gagtgaaactccgcttcc----aaaaaaaaaaag-----------------------aag---aagaagagaaTATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCATTTCTGAGATTTGGAGCTATT
i macFas5.chr7                  I 291 C 0
s papAnu2.chr7                  102442842 340 - 162156779 agcactttgggaggccgaggcaggtggatcacctgaagtcaggagttcgagaccagcctagtcaacatggtgaaaccccatttctactaaaaatacaatacattagccgggcatggtggcgtgtgcttgtaattccagctactcgggcagctgaagcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgcactccagcctgggcaac--gagtgaaactctgcttccaaaaaaaaaaaaaaaa-----------------------aaa---aagaagagaatatatGTACGCACCAGAGCTCAACATTAGCTTAGGAGCATTTCTGAGATTTGGAGCTATT
i papAnu2.chr7                  I 291 C 0
s chlSab2.chr29                  20310653 335 -  24206276 agcactttgggaggccgaggcaggtggatcacctgaagtcaggagttcgagaccagcctagtcaacatggtgaaaccccatttctactaaaaatacaatacattagccgggcatggtggcatgtgcttgtaattccagccactcgggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgca-tccagcctgggcaac--gagtgaaactctgcttcc----aaaaaaaaaaaa-----------------------gaa---aagaagagaaTATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCATTTCTGAGATTTGGAGCTATT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                  18316678 79192 + 132174527 I
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=276572.000000
s hg38.chr15_KI270850v1_alt        142956 185 +    430880 CAACCATGGAAGTTCCTGGCACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCATTTTTTTTGGGGGGGGGGTTGTGGGGGTATATACCATACCAGAttttttaaaaattcacat
s panTro4.chr15_GL392289_random    139895 184 -    187897 CAACTATGGAAGTTCCTGGCACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCATTTTTGG-GGCGGGGGGGTTGTGGGGGTATATCCCATACCAGAtttttaaaaaattgacat
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79984845 180 +  99152023 CAACAATGGAAGTTCCTGGCACACACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCA--GTTTCCCAAATGGCAGTCATTTGCATCTTTGCATTTTTTT---GGGGGGGGTTGTGGGTGTATATCCCATACCAGATTTTTAAAAAATTGACAT
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106467513 181 - 171882078 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTTATTTGCATCTTTGCATTATTTT---TGGGGGTGGGGTGGGGGCATATCCCATACTATA-TTTTAAAAAATTGACAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102443182 181 - 162156779 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTTATTTGcatctttgcattatttt---tggCGGTGGGGTGGGGGCATAGCccatactata-ttttaaaaaattgacat
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20310988 181 -  24206276 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAGTACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTTATTTGCATCTTTGCATTATTTT---TGGGGGTGGGGTGGGGGCATATCCCATACTATA-TTTTAAAAAATTGACAT
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113945447 168 - 132174527 CAACAATGGAAGTTTTTGTTACACACATCAGGTATTCATAATACCCTTTCTCAGGTATTTGGTCACTGCT-GTGAGCCTGCCTGCGTCAGTGTTTCCCAAATGGCAGTCCTTGGCATTCTT------TTTT---TGGGTG------GGGGGTGTATCCCGTGCCAGA-TTTTTAAGAGCTGACAT
i calJac3.chr10                 I 79192 I 542
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=2203913.000000
s hg38.chr15_KI270850v1_alt        143141 1444 +    430880 taaaaatacatgtataaaatgtgtaaagt-----------------------------------gcactaa----tctaaagtgcactggatgtattttttattgatgtacatacttttgttatccatcacccaggtcaaaatacagaatcagcaccacagagggttccctcctcctccttcccagccaataatcttctcctcctacctaaccaactgttcttacttcaatcactgtcaactagtattttacattcttgaactgcatataaaGTGTCTCAAGTttcacttaacacttttcttgaaatacacttgtttttt-gccactttttatttgacctaagaagtaacattaatgaaacaatgatttgacgtgataggcatttccctcctaatgagcactaaaacacttaactatttgaaaaaagaagtttctccgtgtaccagctaatatattctcctcggccgccgttggtacacggaccacattttgTTTCTCAAAGCAATCCGATGATTTCTGAGGTCCTTTGCAGCTTGAACACGGAACGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAATGCTACAGCTCAGGTAACCACGAGCACACAGAGAAAGGGCAGTTTCTAGAAACAGGGCGGAGAGGAGACCGTGAGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACCCTGCTGTGATCACTTTGCCACAGAGCAGCCCCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCCCCGCGTGTACTCACGGGAGGACTCGCAGACGTTACTGCCCTCTTGCGTGCCCCGGCCACCCCCGGGCGGCTTGTAGCCGGTGCGCGGGGTGGCTGGGGCTACGTGCAGAGCTGTCGCGGAGCCGGAACAGCAGCGGTGAAGCCCCTCGGCTCGGCCGAGACCGCCGTGCCCATTGCTCGCCTCGGTTgccgccgctttagccgcagccgctgctgccgccgccgGGGGAGAGGCAGCCTATTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTCTCGGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCTCGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCAGGGGCGGGCGG
s panTro4.chr15_GL392289_random    140079 1445 -    187897 taaaaatacatgtataaaatgtgtaaagt-----------------------------------gcactaa----tctaaagtgcactggatgtattttttattgatgtacatacttttgttatccatcacccaggtcaaaatacagaatcagcaccacagagggttccctcctcctccttcccagccaataatcttctcctcctacctaaccaactgttcttacttcaatcactgtcaactagtattttacattcttgaactgcatataaaGTGTCTCAAGTtttacttaacacttttcttgaaaaacacttgtttttttgccactttttatttgacctaagaagtaacattaatgaaacaatgatttgatgtgataggcatttccctcctaatgagcactaaaacacttaactatttgaaaaaagaagtttctccgtgtaccaactaatatattctcgtcggccgccgttggtacacggaccacattttgTTTCTCAAAGCAATCCGATGATTTCTGAGGTCCTTTGCAGCTTGAACACGGAACGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGGACGCAGAAGACTCAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAATGCTACAGCTCAGGTAACCACGAGCACACAGAGAAAGGGCAGTTTCTAGAAACAGGGCGGAGAGGAGACCGTGAGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACCCTGCTGTGATCACTTTGCCACAGAGCAGCCCCGGCGGTCAACCTCAGCCTCCCTGAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGACGTTACTGCCCTCTTGCGTGCCCCGGCCACCCCCGGGCAGCTTGTAGCCGGTGCGCGGGGTGGCTGGGGCTACGGGCAGAGCTGTCGCGGAGCCGGAGCAGCAACGGTGAAGCCCCTCGGCTCGGCCGAGAccgccgtgcccatcgctcgcctcggttgccgccgctttagccgcagccgctgctgccgccgccgGGGGAGAGGCAGCCTATTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTCTCGGCTGGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCTCGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCAGGGGCGGGCGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79985025 1445 +  99152023 TAAAAATACATGTATAAAATGTgtaaagt-----------------------------------gcactca----tctaaagcgcactggatgtattttttattcatatacatacttttgttatccatcacccaggtcaaaatacagaaccagcaccacagagggttccctcctcctccttcccagccaataatcttctcctcccacctaaccaactgttcttacttcaatcactgtcaactagtattttacgttcttgaactgcatataaaGTGTCTCAATTtttacttaacacttttcttgaaatacacttgtttttt-gccactttttatttgacctaagaaataacattagtgaaacaatggtttgacgtgataggcatttccctcctaatgcgcacaaaaacacttaactatttgaaaaaagaagtttcttcgtgtaccaactaatatattctcct-ggccgccgttggtacacggaccatattttgTTTGTCAAAGCAATCCGATGATTTCTGAGGTCCTTTGCAGCTCGAACACGGAATGACTTTGCGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTCAGACTGTCCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGGGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTACAGCTCAGGTAACCACCGGCACACAGAGAAAGGGCGGTTTCTAGAGACAGGGCGGAGAGGATACCGTGGGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACCCTACTATGAACACTTAGCCACAGAGCAGCAGCGGCGGTCAATCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCGTACTATTGGCCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGTTCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTCACCGCCCTCTTGCGTGCCCCGCCCACCCCCGAGCAGCTTGTAGCAGGTGCGCGGGCTGGCTGGGGCTACGTGCAGGGGTGGCGCAGAGCCGGAGCAGCAGCGGTGAAGCTCCTGGGTTCGGCCGAGACCGCCGTGCCCATTGCTCGCCTAGGTTGCCGCCGCTTTAGCCGCAGCTGCTGCTGCTGCCGCCGGGGGAGCGGCCGCCTATTGTCTTTCTCCGCGGCGAAGGTGACGAGCTGTCTCGGCTCGGCCCGCGGGGGAGCCCCGAGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGTAAGTTTTGTGATTTGAGGA-GGGGTCGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCTCGGTGGGGCGGACCCCAGAGGAGGGCCGGGGGCTGCGCTGGGCTTCTGGGGCTGGCGG
i ponAbe2.chr15                 C 0 I 106
s macFas5.chr7                  106467694 1387 - 171882078 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgtatttttttttcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagcaac-caga-ggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacc-actgtcctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctcaatttttacttaacatttttcttgaagtacacttgtttttt-gccactttttatttgacctaagaaataccattaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcactaaaacacttaactatttgaaaaaagaagtatctttgtgtatcaactaatatattctcctcggccaccgttggtacacggaccacattttgTTTCTCAAAGCAACCAGATGATTTCTGAGGTCGTTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATACCGCCGTGCATCCATCCAACACTTG-------------TTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACTGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACGGTA--------------AGAGAAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGTGGCAGTCAACCTCAGCCTCCCTTAGCAACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGGGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCCTGCGTGCCCCGCCCACCCTCGGGC-GCTTGTAGCTGGTGCGCAGG-----CGGGGCTGTGTGCAGGGTCAGCGCGTAGCCCGAGCAGTAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCAGTCGCCGCCTCTTTAGCCACCGCCGCCTCTGCC------GGGGGAGCGGCCGCCTATTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGTCTC-----GGCCGGCGGGGGAGCCCCGGGAGCTTCACTGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGCAAGTTTTGTAATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCTGCTAGGTGGGGCGGGCTCC------------GGAGCTGCGCAGGGCTTCCGgggcaggcgg
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102443363 1387 - 162156779 taaaaatacatgtttaaaatgtgTAAAGT-----------------------------------GCACTAA----TCTTAAGTGCACTGGatgtattttttattcatgtatACACTTTTGTTATCCATCACCCAGGTCAAAATACAGAACCAGCACC-CAGAGggttccctcctcttccttcccagtCAATAATCGTCCCCTCCTACCTAACC-ACTGTTCTTACTTCAGTCACTGTCAACTAGTTTTGCACGTTCTTGAACTGCATATAAAGTGTCTcaattttt-cttaacatttttcttgaagtacacttgtttttt-gccactttttatttgACCTAAGAAATACCATTAATGAAACAATGGTTTGACGTGATAGGCATTTCCCTCCTAATGCGCACTAAAACACTtaactatttgaaaaaagaaGTAACTTTGTGTATCAACTAATATATTCTCCTCGGCCACCGTTGGTACACGGACCACATGTTGTTTCTCAAAGCAACCAGATGATTTCTGAGGTCGTTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTG-------------TTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACAGTG--------------AGAGAAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCGGTCAACCTCAGCCTTCCTTAGCAACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGGGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCTCTC-GCTCCGCGTGTACTCACGGGAGGACTCACAGGCGTTACCGCCCTCCTGCGTGCCCCGCCCACCCTCGGGC-GCTTGTAGCTGGTGCGCAGG-----CGGGGCTGTGTGCAGGGGCAGCGCGTAGCCCGAGCAGCCGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCGGTCGCCGCCTGTTTAGCCACCGCCGCCTCTGCT------GGGGGAGCGGCCGCCTATTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGTCTT-----GGCCGGCGGGGGAGCCGCGGGAGCTTCACTGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCTGCTAGGTGGGGCGGGCCCC------------GGAGCTGCGCGGGGCTTCCGGGGCAGGCGG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20311169 1403 -  24206276 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgtattttttattcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagcacc-cagagggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacc-actgttctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctcattttttacttaacatttttcttgaagtacacttgtttttt-gccactttttatttgacctaagaaataccattaatgaaacaatggtttgacgtgataggcatttccctcc-aatgcgcactaaaacacttaactatttgaaaaaagaagtatctttgtgtatcaactaatatattctcctgggccaccgttggtacacggaccacattttgTTTCTCAAAGCAaccagatgatttctgaggtcatttgcagctcgaacacggaatgactttgtggtGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTG-------------TTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCCGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCGGTCAACCTCAGCCTCCCTTAGCAACTTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCTTGCAATCCTAGCTAGCAGCCCTC-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCGCCTGCGTGCCCCGCCCACCCTCGGGCAGCTTGTAGCTGGTGCGCAGG-----CGGGGCTGTGTGCAGGGGCAGCGCGTAGCCCGAGCAGCAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCGGTCGCCGCCTCTGTAGCCACCGCCGCCTCTGCT-------GGGGAGCGGCCGCCTATTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGTCTC-----GGCCGGCGGGGGAGCCCCGGGAGCTTCACTGTGACAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGAGGGGGTGGCGGTGCGGAGCGCGGCCCGTCCCCCTGCGGCTGCTAGGTGGGGCGGGCCCC------------GGAGCTGCGCGGGGCTTCCGgggcaggcgg
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113946157 1296 - 132174527 TAAAAATACATGTTTAAAACGTGTAAAGTTACTGGCTGTGGAAAAGAAAAATAAAAAAAGAAAAacaataaaacgtgtaaagtgcactagatgtatttttcattcatgtatatgcttttgttatccacctcccaggtcaaaatacagaaccagcaccccagagggttctctcctcctcc--------------------------------------------------------------------------tccTTGAAGTGTACTTCAAGAAG---AGTTtttacttaacactttttttgaagtacacttttttttttgccactttttatttga------------cattaatgaaacaatggtttgacgtgataggcattcccctcctaatgagcactacaacacttaactatttgaaaaaagaagtttcttcgtgtaccagctaatatattctcctcggccacagttggtacatagattacattttgTTTCTCAAAGCAaccagatgatttctgaggtcctttgcagctcgaacacggaatgactttgtggtGATCTAGTAGC--------CACGGAATGCACTGTCACAATCGTGATTCCGCCATAGCACCGTGCATCCATGCAACACTTG-------------TTTAATACCTAGCAGT---GACTCTGCTAGGCTGTGGACACAGAACACTAAACCCCACTTCCTGATTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCAGGATGTGTGGTTAAGTGCTACAGTTCAGGTAACCACTGGCACACAGAGGAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGCCTCAGCCGGCCACCCCACTTTGATCACTTTGCCGCC-AGCAGCAGCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGCGTGCCCCGCCCAGGAGCCTTACTATTGGTGTCGTGGAGCGGAATGGGCAGCTCTGCCGTGCAATCCCAGCTCGTAGCCCTTGGCTCCGCGTGTATTCACTGGAGGATTCTCGGGCTTTATAACCCTCCCGCGTGCCCCGCCCACCC-CGGGCAGGCTGCTGCGCATGCGCGGGCAGGCTGGGTCTGTGTTCTGGGG-AGCGCGGAGCCGGAGCAGCCGCGGAGGAGCGCTTGGGCTCCGCCGATACCGTAGTGTCCACTGCTCGCCTCAGTCGCCACTGCTTTAGCCGCCGCCACC------------GGTGGAGCGGCCGCCTATTGTCTTTCTCCGTGGCGAAGGTGAGGAGCTCTCCCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGCCGGAGTTGGGGGAAGTTTTG--ATTTGAGGA-GG--------------------------------------------GGGGCG------------------GGGTCTGCAGCGGGCTTTAGGGGCGGGCGG
i calJac3.chr10                 I 542 C 0
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=220496.000000
s hg38.chr15_KI270850v1_alt        144585 179 +    430880 CACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGATGGGGGGCGCGCCCGGCGGCG-----------------------GATGGCCCCGAA
s panTro4.chr15_GL392289_random    141524 179 -    187897 AACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGATGGGGGACGCGCCCGGCCGCG-----------------------GATGGCCCCGAA
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106469081 178 - 171882078 gacggacgggtagccgggcggcgcgggGACCTCAGCTTTGCAGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTT-GGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102444750 178 - 162156779 GACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGTATTGTCTGCCTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTT-GGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20312572 179 -  24206276 gacggacgggtagccgggcggcgcgggGAGCTCAGCTTTGCGGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAA
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113947453 201 - 132174527 GACGGACGGGTTGCCTGGCGGCGCCGGGACCTCTACTCTGCGGACCCCTCCTCCCTTCGCATCACCCTTCTCCCGCATTGTCTGTTCCGGGCTCGGCGCGCTTCCCACCCCGCGGCGCCGCTT-GGGTCAGTCACCGCTTTCCGGGTCGGAGACGCGCTCGGCCGCGGAGGCCTCCTCAGTCGCCCCAGTGAGGCCCCCGAA
i calJac3.chr10                 C 0 C 0
e nomLeu3.chr6                  101773322 7475 + 121039945 I
e ponAbe2.chr15                  79986470 106 +  99152023 I

a score=2418759.000000
s hg38.chr15_KI270850v1_alt        144764 1568 +    430880 CCCTTGCCCC-GGGTCCCCGGGTTGGCGCCGCTGGGGCGGACTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGCGAGGGAGCGGTTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCCGGCGGCGCCCGCCTGCTGGGGCCTCTCCGCTGTTTCTCGCGGGCGCGGCCCGGCTGAAACTGCGACCGTCGGAGGCGAGCGGCCCTCTGGGACCCGTGCAGCC---------------------------GGTCCACCTTGCAGCTATACTTTGAGACTAAACA---------------------ttttt-------------------tttttttttttttGCAAAGGCAAACCGGTATGTGAAGTTGAAAAAATCAAAAACCCTCAAAt--------tttccttctttt----ttt-------ttttttttttttAAATCAAGAAAGGGGGTAGATAGGTTTGTTTTGTTTTAGAAATAGTTTTTATAGCAGAGTGATACCGTCACATTTAAT------GATCCTACTGTGAATTCAAGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGATACTCATTAATGAAGTTCGTTGGAGAA-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCCTTT----TTT-------TTTGTTACTACTCCCCC---------CTCCCCGC-ATTGTTTTATTTTTCGAAGAAGCACTTTATTCAGTTTTTCTAAGCCACGGGATTGCCCAGATGAGGACCAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATGAGTTGAGATAAACCAGTGTTACTGTTCTTGTATTCTGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTCTGGCTTATTATATGAACATGATTCTGTTTCACTTCCCCAGATGGAACTAGCTTAAATGTCTATCATTTATAGTGACAAATGATCAAAATGGCTAGAGTGTCATTTA---TTAACTTCAGTTGTAGTCCTTTACCTTACCTTCTGCTAAATGAAAAAGAAAAATTTGACAAAT-ACTGTGTGCGTCAGTTTGCTCTGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCCCTTTTAAACTACAGAGCCACTTGTAGGATTCACAATACTCACTCAATGGCTTCCCTTCCTGGCAgtgtggttt--------------------tgtgtgtgtgtgtgattgtgGGGAAGGAGGCTGACAG----AGGTTGGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTA--------------------------------------------------------------------------------------ACAACATAACGTGACGAGGGCACCAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTGTAGGATTTCTCACAGTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATACTATAAATGGActcctcctctagtcctttaactccttgagggctgtgatagaccttatttaactttgtaccct
s panTro4.chr15_GL392289_random    141703 1572 -    187897 CCCTTGCCCC-GGGTCCCCGGGTTGGCGCCGCTGGGGCGGACTCAGTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGGGAGGGAGCGGCTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCCGGCGGCGCCCGCCTGCTGGGGCCTCTCCGCTGTTTCTCGCGGGCGCGGCCCGGCTGAAACTGCGACCGTCGGAGGCGAGCGGCCCTCTGGGACCCGTGCAGCC---------------------------GGTCCACCTTGCAGCTATACTTTGAGACTAAACAA------------------ttttttt-------------------tttttttttttttGCAAAGGCAAACCGGTATGTGAAGTTGAAAAAAGCAAAAACCCTCAAAT--------tttccttctttc----ttt-ctttctttttttttttTTAAATCAAGAAAGGGGGTAGATAGGTTTGTTTTG-----GAAATAGTTTTTATAGCAGAGTGATACCGTCACATTTAAT------GATCCTACTGTGAATTCAAGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGATACTCATTAATGAAGTTAGTTGGAGAG-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCCTTT----TTT-------TTTGTTACTACTCCCCC---------CTCCCCGC-GTTGTTTTATTTTTCGAAGAAGCAATTTATTCAGTTTTTCTAAGCCACGGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATGAGTTGAGATAAACCAGTGTTACTGTTCTTGTATTCTGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTATATGAACATGATTCTGTTTCACTTCCCCAGATGGAACTAGCTTAAATGTCTATCATTTATAGTGACAAATGATCAAAATGGCTAGAGTGTCATTTA---TTAACTTCAGTTGTATTCCTTTACCTTACCTTCTGCTAAATGAAAAAGAAAAATTTGACAAAT-ACTGTGTGCGTCAGTTTGCTCTGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCCTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCCGTTTTAAACTACAGAGCCACTTGTAGGATTCACAATACTCACTCAATGGCTTCCCTTCCTGGCAGTGTGGTTT--------------------TGTGTGTGTGTGTGATTGTGGGGAAGGAGGTTGACAG----AGGTTGGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTA--------------------------------------------------------------------------------------ACAACATAACGTGACGAGGGCACCAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTGTAGGATTTCCCACAGTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATACTATAAATGGActcctcctctagtcctttaactccttgatggctgtgatagaccttatttaactttgtaccct
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79986576 1685 +  99152023 CCCTTGCCCCGGGGTCCCCGGGGTGACGCCGCTGGGGCGGACTCA-TCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCGGCGAATAAGTGCTGCGGGCGCGAGGGAGCGGCTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCCGGCGGCGCCCGCCTGCTGGGACCTTTCCGCTGCTTTTCAGGGGCGCGGCCCGGCTGAAACTGCGCCCGTCGGAGGCGAGCGGCCCTTTGGGACACGTGCAGCC---------------------------GGTCCAACTTGCAGCTATACTTTGAGACTAAACAC----------ttttttttttttttt-------------------tttttttttttttGCAAAGGCAAACCGGTATGTGGAGTTGAAAAAAGCAAAAACCCTGAAAT--------TTTCCTTGTTTC----TTT------TTTTTTTTTTTTTAAATCAAGAAAGGGGGTAGATAGGTTTGTTTTGTTTTGGGAATAGTTCTTATAGCAGAGTGATACCGTCACATTTAAT------GATCCTACTGTGAACTCAAGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TAATACTCATTAATGAAGTTAGTTGGAGAG-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCC-TT----TTT-------TTTGTTACTACTCCCCC---------CTCCCCGC-ATTGTTTTATTTTTCGAAGAAACAATTTATTCAGTTTTTCTAAGCCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATCAGTTGAGATAAACCAGTGTTACTGTTCTTGTATTCTGTGGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCTGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTCTGGCTTATTATATGAACATGATTCTGTTTCAATTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTGACAAATGAACAAAATGGCCAGAGTGTCATTTA---TTAACTTCAGTTGTATTCCTTTACCTTACCTTCTGCTAAATGAAAAATAAAAATTTGACAAAT-ACTGTGTGTGTCAGTTTGCTCTGAGTGATTTCTCATGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGACATTGCCCTTTTAAACTACAGAGCCACTTTTAGGGTTCACAATCCTGGCTCCATGGCTTCCCTTCCTGGTTGTGTGGTTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgATTGTGGGGAAGGAGGTTGACAG----AGGTTGGAAGGGATTGTCAGGGAGG--GACATAATGTAAGCAAGTACTACTTACAACATAATGTGACGAGTGCACCAGTTGCTTNNNNNNNNNNGGATTGTCAGGGAGGGACATAAATGTAAGCAAGTACTACTTACAACATAATGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTTTAGGATTTCTCACAGTTCGTTTGCCTTGACTAAATGGTATCTGCACACATACTATACTATAAATGGActcctcttctagtcctttaactccttgagggctgtgatagaccttatttaactttgtaccct
i ponAbe2.chr15                 I 106 C 0
s macFas5.chr7                  106469259 1577 - 171882078 -CCCTGCCCC-GGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCCGGCGGCCTCCGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCCGGGGGCCGACGCAGACGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTGTCCCGGACGCGGCCCGGCTGAAACCCCGCCGCTCCGAGTCGAATGACCC-AGGAGACCTGTGCGGTC---------------------------GGTCCAACTTGCAGCTATACTTTGAGACTAA------------------------TCTTA--------------------TTTTTTTTTTTTGTAAAGGCAAACCGGTATGTGAAATTG-AAAAAGGAAAAACCCTCAAACAAAc----tttctttctctc----ctctctctctctttcttttttAAACTCAAGAAAGGGGGTAGATAGGTTTGTTTTG-----GAAATGGTTCTTATAGCAGAGTGATACCGTCACATTTAAT------GCTCCTACTGTGAACTCAGGAATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCCttttttgtttgtttg--tttgttACTACTTCCCC----CCCCACCCCCCGC-ATTGTTTTAATTTTCGAAGAAGCAGTTGTTTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTGGTTATTGGCAAGTTTGTGAAGAAGCTAAGATCAGTTGAGATAAATCATTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATGATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCATCTGCTAAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGGGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCGATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTTAAACTACAGAGCCAGTTTTAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGT--------------------------TGTGTGTGTGATTGTGGGGAAGGAGGTTGGTTGAC--AGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTG-----------------------------------------------------------------------------------CTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTTACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTGCTGTGATAGACCTTACTTAGCTTTGTACCCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102444928 1578 - 162156779 -CCCTGCCCC-GGGTCCTTTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCCGGCGGCCTCCGTTTGGAGTCCGCGCCCAGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCCGGGGGCCGACGCAGACGGTAAATCTGTCGGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTCTCCCGGACGCGGCCCGGCTGAAACCCCGCCGCTCCGAGTCGAATGACCC-AGGAGACCTGTGCGGTC---------------------------GGTCCAACTTGCAGCTATACTTTGAGactaa------------------------tctta-------------------tttttttttttttgtaaaggcaaACCGGTATGTGaaattgaaaaaaggaaaaatcctcgaacaaactttatttctttctctc----ctctctttctctttcttttttaaactcaAGAAAGGGGGTAGATAGGTTTGTTTTG-----GAAATGGTTATTATAGCAGAGTGATACCGTCACATTGAAT------GCTCCTACTGTGAACTCAGGAATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--cagtgtgccttt----tttttttg--tttgttactactt-ccc----ccccaccccccgc-attGTTTTAATTTTCGAAGAAGCAgtttattcagtttttctaaaCCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAACCAGTGTTGCTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAATTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGtgacaaatgaacaaaatagcCAGAGTGTCATTTACTGTTAACTTCAGTTGTATTCCT-----TTACCATCtgctaaatgaaaaagaaaaatttgagaaataactGTGTATGTCAGTTTGTTGTGAGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGTGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAAAACTGTAGAGCCAGTTTTAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGgttgtgtggttg------------------------tgtgtgtgtgattgcgGGGAAGGAGGTTGGTTGAC--AGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTG-----------------------------------------------------------------------------------TTTACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTACCCTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGACTCCTCCTCTAGTTC-TTAACTCCTTGAGTGCTGTGATAGACCTTACTTAGCTTTGTACCCT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20312751 1582 -  24206276 -CCCTGCCCC-GGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCTGGCGGCCTCCGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCCGGGGGCCGACGCAGATGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTCTCCCGGACGCGGCCCGGCTGAAACCCCGCCGCTCCGAGTCGAATGACCC-AGGAGACCTGTGCGGTC---------------------------GGTCCAACTTGCAGCTGTACTTTGAGACTAA------------------------TCttttt----------------ttttttttttttttGTAAAGGCAAACCGGTATGTGAAATTGAAAAAAGGAAAAACCCTCAAACAAAc----tttctttctctcctctctctctctctctttctTTTTTAAACTCTAGAAAGGGGGTAGATAGGTTTGTTTTG-----GAAATGGTTCTTATAGCAGAGTGATGCCGTCACATTTAAT------GCTCCTACTGTGAACTCAGGGATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCCTCT----TTTTTTTT--GTTGTTACTACTTCCCC----CCCACCCCCCCGC-ATTGTTTTAATTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAGCCAGTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTACAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTGTATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCACAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCATCTGCTAAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGAGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAGAACTATAGAGCCAGTTTTAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGT--------------------------TGTGTGTGTGCTTGTGGGGAAGGAGGTTGGTTGACAGAGGTTGGAAGGGATTGCCAGGGAGG--GACACAATGTAAGCCAGTACTG-----------------------------------------------------------------------------------CTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTGTAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTGCTGTGATAGACCTTACTTAGCTTTGTACCCT
i chlSab2.chr29                 C 0 I 10
s calJac3.chr10                 113947654 1623 - 132174527 CCCCTggccc-gggtccccgggtcggcgccgcgggggcgggcccgcTCCTGCCGTGGGGCTGGCGGCCGCGGTGTGGAGTGCGCGCCTCGAACAAGTGCTGCGCGCGCGAGGGAGCGGTTCTCC-GGGGCCGACCCGGGCGGTAAACACGTCGGGCCGCGCCCGCCTGCCGGGGCCGTTCTGCGCCTCCTCGGGGGCGCCGCCGGGCTGAAACCGCGCGGGTCTGAGGCGAGCGGCCC-AGGAGACCTGTGCGGTCCTCACGCACTTTGCGACCATTGCAGCTGGCTCAACTTGCAGCTATATCTTGAGAGCAAACAAAACAAAACACTTTTTTTTTTTTTTTGTAAGTATGGCTCACTGCCTTTTTTTTTTTTTGCAAA-GCCAACCAGTTTGTGAAGTTG-AAAAAGGAAAAACCCTCAA----------CGTCCCCCCCCC----CTT------------TTATTTTAAATCAAGAAAGGGGATAGATAGGTTTGTTTTGTTTTGGAA---GTTCTTACAGTCGAGTGATACCGTCGGGTTTAATTTTCTAGGTCCTACTGTGAACTCAGGAATTCGCAGTGAAAGTTGGATTGAACTTTATTTTGGTGTTCATTCTTTGCTGTGACACTCCTTATTGAAGTTATTTGGAGAGTTTTACTGCTTCAGTACAGTAAAAACTGTACTGTGCCTTT----TGTTGTTGTTGTTGTTGCTACTCGCCCTCACCCGCCCCCCCCACAACTGTTTTATTTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCGTTGGATTGCCCAGATGAGGACAAAAGTTGCAGTTCTTAAAAGGTCATTATTAGCAAGTTTGTGAAGGAGCTGACATCAGTTGAGATAAATCAGTGTTCCCGTTCTTGTATTCCATCGTGTACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTTGTCAAGTTTTGGGTGCTCGTATCCCAGTGAATTTGGTTCTCGTGGCTTATGAGATGAACGTAATTCTGTTTGAGTTTCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTG------GAAGAAAATGTCCAGAGTGTCATTTATCGTTAACT-------TGTTCCT-----TTACCACTTGCAAATGAAAAAAGAAAAATTAGAGAAAT-ACTGTGTGTGTCAGTTTGCTTTGAGTGATTTCCCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTCTC-----TGGTGGGCCTTGTGTTATAAAACTAACTTTCTTCGCCTGATGAAACTAAAGACAAATTTTCTTCAGCTACAGACATTGCACTTTTAAAAC-TAACGTCACTTTTAGAATTCAGAATATTCGCTCGATGGCCTTCCTTCCTGGTTTTGTGGT----------------------TGTGTGTGTGTGTGATTGTGGAGGAGGAGGTTGACAG----AGGTTAGAAGGGATTGTCAGGGAGGGAGACATAATGTAAACAAGTACTA-----------------------------------------------------------------------------------CTTACAGCATAACGTCACAAGTACACCAGTTGCTTTCCTTCCCTGGGCTGTGATGGCGTGTTACACTGTAGATACAATTGTTTTAGGATTTCTCACACTTCATCTGCCTTGACTAAATGGTAACTGCACACATACTG------AAATGGACTCC---TCTAGTCCTTTAACTCCTTGAGGTCTGTGATAGACCTTATTTAGCTTTGTACCCT
i calJac3.chr10                 C 0 C 0
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=2068277.000000
s hg38.chr15_KI270850v1_alt        146332 1278 +    430880 ctttgccagt----ggttttaacatagtgcaggcccggtatgtgtttgaattgggtaaatTACTTTTACTGCCTAGTGGTAGCTGGTGTACACAGGAGAGGGCCACCAACTCTGGGGACTTGTCCAAAATGACAATTCACTTGCAGATCTCTGATGAAATTTACTTTAAAAGGACTTCTAA-CCTTTTTTT--------TAATCTGTCGGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTTAACAAGAGATTCCGATTTAGAAATCTG-------T-TCC-CCCTTTTGGTGAAATTATTAttttttt-tagagtcagaatcttcactgttgcccagttgtct----ccccgggacccaagccgtcctcccacctcagcctcccacagtactggaattacaggcgtgagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTGCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtacgccctttggagctaggtagagttcagatccccacatttccattgagtagttgcatagcctctcagagcttcagcttcctactccttaagggttagtaacatgctttgcagtgttgttaggaatcagtgaaactgtgtgagatacttaactgcagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCATTCTGAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCAT-AAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCGTTTCTTCAAAGG-TGTCAGATGAACTGAAGGATAATGGAAACAATAGCAAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGT-ACTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAGTGAGTTCCAACTTTCCTTATTTT------ACCTTAGTCTTGACAAATAACAAGTATGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGC--AGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTTACACTAGCTGATGGAGTAGATACATTCTAG
s panTro4.chr15_GL392289_random    143275 1278 -    187897 ctttgccagt----ggtcttaacatagtgcaggcacggtatgtgtttgaattgggtaaatTACTTTTACTGCCTAGTGGTAGCTGGTGTACACAGGAGAGGGCCACCAACTCTGGGGACTTGTCCAAAATGACAATTCCCTTGCAGATCTCTGATGAAATTTACTTTAAAAGGATTTCTAA-CCTTTTTTT--------TAATCTGTCGGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTTAACAAGAGATTCCGATTTAGAAATCTG-------T-CCC-CCCTTTTGGTGAAATTATTAttttttt--agagtcggaatcttcactgttgcccaattgtct----cctggggacccaagccgtcctcccacctcagcctcccacagtattggaattacagacgtgagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTGCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaagaaagtacgccctttggagctaggtagagttcagatccccacatttccattgagtagttgcgtagcctctcagagcttcagcttcctactccttaagggttagtaacatgctttgcagtgttgttaggaatcagtgaaactgtgtgagatacttaactgcagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACGTGACTTAAGCATTCTGAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCATTAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCACAGG-TGTCAGATGAACTGAAGGATAATGGAAACAATAGCAAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGCGAGTGGGACTTGCAGAGT-ACTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAGTTAGTTCCAACTTTCCTTATTTT------ACCTTAGTCTTGACAAATAACAAGTATGGATTATGTCTGTATTTCTGAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGT--AGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTCAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTTACACTACCTGATGGAGTAGATACATTCTAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79988261 1282 +  99152023 ctttgccagt----ggtcttaacatagtgcaggcacggtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGCGTATACAGGAGAGAGCCACCAACTCTGGGGACTTGTCCAAAATGACAATTAACTTGCAGATCTCTGATGAAATTTACTTTAAAAGGATTTCTAACCCTTTTTTT--------TAATCTGTCGGTTATTTCTGG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAGGGATTTTAACAAGAGATTCCGATTTAGAAATCCG-------TCCCC-CCCTTTTGGTGAAATTATTAttttttt--agagtcggaatcttcactgtttcccagttgtct----ccccgggacccaagccgtcctcccacctcagcctcccacagtgttggaattacaggcgtgagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTCCCTCCATTGTGAAATTGG--AAAAAAAATTAGAAATTTTAgaaaaaagtacgccctttggagctaggtagagttcagatccccacatttccattgagtagttgcatagcctctcagagcttcagcttcctactccataagggttagtaacatactttgcagtgttgttaggaatcagtgaaactgtgtgaggtacttaactgcagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCAT-AAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCAAAGGATGTCAGATGAAATGAAGGATAATGGAAACAATAGCAAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGCTGGACTTGCAGAGTGGCTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAGTTAGTTCCAACTTTCCTTATTTT------ACCTTAGTCTTGACAAATAACAAGTATGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGATTGGGTGTTAACAGTGTTAGTTCAGT--AGAGACATGAGCAAATCACTCACTTCCTCTTCAAGATAACACTTCAAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTTATATTACCCAATGGAGTAGATACATTCTAG
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106470836 1274 - 171882078 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAAAGAGCCACTAACTCTGGAGACTTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAA-C------TTAAAAAAAAAAATCTGTCGGTTATTACTTATTTAAAGAAGTGGGGCTTAACTGGTGCTCAAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCG-------TCCCC-CCCTTTTGGTGAAACTATTAttttttt--agagtcggaatc-tcactgtttcccagttgtct----gccgggaacccaacccgtcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacatttccattgactagttgcacagtctctcagagcttcagtttcctactccataaaggttagtaacatgctttgcagagtttttagggatgaatgaaac--tgtgaggtacttaacttcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGGTTTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTATTTCTTTCAT-AAAGAAGGGGCCCTGAGACTTGTGAGTCTTATAGGAATGCATTTCTT---AGG-T--CATGTAAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGAGACTCGCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCGGTACATCAGTCCTAAGAGGCTATGAGGTACTTCCAACTTTCTTTATTTT------ACCTTAGTCTTGACAAATAACAAGTGTGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTGGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAACCTGCCACCATTTACAGAAGAAAACAGTGATTTAAAGCAGCTATACCAGCACAGTTTAGAATACTTACAGTACCCTATGGAGTAGATACATTCTAG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102446506 1273 - 162156779 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTgggtaaattatttttactgcCTAGTGGTAGCTAGCGTACACAGGAGAGAGCCACTAACTCTGGAGACTTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGAAATTTactttaaaaggatttttaa-c------tt-aaaaaaaaaatctatcggttattatttatttaaagaagtgGGGCTTAACTGGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCG-------Tcccc-cccTTTTGgtgaaactattattttttt--agagtcgGAATC-TCACTGTTTCCCAGTTGTCT----GCCGGGAACCCAAcccgtcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccACCCAGCTggtgaaattattaaaattg-----------tagTGACAACTCTCCCTCCATtgtgaaattgg---aaaaaaattagacattttaGTAAAACGTACACCCTTTGAAGCTAGGTAGAGTTCAGATCCCCACATTTCCATTGACTACTTGCATAGTCTctcagagcttcagtttcctaCTCCATAATGGTTAGTAACATGCTTTGCAGAGTTTTTCGGGATGAATGAAAC--TGTGAGGTACCAAACTTCAGTATTTAACATGAAGTAGGTAGCTATTTCCTGGTAGCTGTAATGATAATAATTTTGATACGTTTTTACGTGACTTAAGCTTTCTTAAAAGTCTGATGCTTCTGAGTATACAGGCTTAGCTAATTCTTTCAT-AAAGAAAGGGCCCTGAGACTCCTGAGTCTTATAGGAATGCATTTCTT---AGG-T--CATGTAAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGACTGAGACTCGCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCCTAAGAGGCTATGAGGTAGTTCCAACTTTCTTTATTTT------ACCTTAGTCTTGACAAATAACAAGTGTGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTGGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTGCCACCATTTACAGAAGAAAGCAGTGATTTAAAGCGGCTATACCAGCACAGTTTAGAATACTTACAGTACCCGATGGAGTAGATACATTCTAG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4012262 1273 +  24206276 gtgtgccagt----agtcttaacatagcgcaggcacagtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAGAGAGCCACTAACTCTGGGCACTTGTCCAAAATGACAATTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGAATTTCTAA-CCTTTTTTT--------AAATCTGTCAGTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCCCTAAGGATTTCAACAAGAGATTCTGATTTAGAAATCTGCCCCCCCTCCCC-CCGTTTTGGTGAAATTATTAttttttt--agagtcggaatc-tcactgtttcccagttgtct----cccggggacccaagccatcctcccacctcagtctcccacagtgtttgaattacggatgtgagccaccccacccaacTGGTGAAGTTATTAAAATTG-----------TAGTGACAACT----CTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTAAAAaaaacgtacaccctttggagctaggtagagttcacatccccacatttccattgactagttgcatagcctctcagagcttcagtttcctactctgtaagggttagtaacatgctttgcagtgttcttagaaatcagtgaaactatgtgaggtacttaactgcagtatctaacgtggaataagtagctatttcctggtagctGTCATGAGAATAATTTTGATACATTTTT-----ACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTAATTCTTTCAT-AAAGAAGGGGCCTTGAGACTTGTGAGTCTTATCTAAATCTGTTTCTTCAAAGG-TGCCAGATGAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTGTGTTATTTAGGAAACAGTGCGAGATGGATTGTTTTCAGTTCATCAGTCATAAGAGGATATGTG----TTCCAATTTTCTTTATTTT------ACCCTAGTCTTGACAAATAATAAGTGTGGAATATGTCTGTATTTGTCAGACTTGTTTAAGGTGGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTACCACCATTTACAGAAGAAAGCTGTGATTTAAATCAGTTATATTAGCAAAGCTTAGAATACTTATAGTACCAGATGGAATAGATACATTCTAG
i chlSab2.chr29                 n 10 C 0
s calJac3.chr10                 113949277 1301 - 132174527 CTTTGTCAGTAAAGAGTTTTAACATAGTGCAGGCAGAGTATGTATTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGGGAGCCACTAACTCTGGGGACTTGTTCAGAATGACAGTTAACTTGGGGCTCTGTAATGAAATGTATTTTAAAAGGATTTTTAG-CCTTTTAAA--------AAATCT----GTTATTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCC-------ACCCCACCCCTTGGGTGAAATTAttttttttttttagagccagagta-tcactgtttcccagctttctctaactcctggacccaagccatcctcccacctcagcctcccacagtgttggaattacaggcgtgatccaccccacccagcTGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAACTCTCCCTCCATTGGGAAATTGGAAAAAAAAAATGAGAAGTTTTAgaaaaaagtacatgctttggagctaggtaaagttcagatccgcacatttccattgaccagttgcatagcctgtcagagcgtcagtttcctaccccctaagggttagtgacatgctttgcagtgttctcaggaataaatgaagctgtgtgaggtattt-actacagtacctaacacgaagtaggTAGCTATTTCCTCGTAGCTGTAATGATAATAATTGTGATACGTTTTTACATGACTTAAGCATTCTT--AAGTCTGATGCTTCTAAGTATAGAGGTTTAGCGATTTCGTCCAT-AAATAAGGGGCCCTGAGACTGGTGAGTCTTATCCAAATGCATTTCTC-AAAGG-TGCCAGATGAACTGAAGGATAATGGAAACAGTAGTGAGTTTATCTTCTCAGTCACCTGTTAGTCTTCCTTTGAGAGTGGGACTTGCAGAGTGGCTTGGTAGGGTAGAGCTCTTTGTGGCTGTGGTATTTAGAAAACGGTGAGAGATGGATTGTTTTCAGTATATCAGTCATAAGAGGATATGAGTTAGTTCCAACTTTTTTTCCTTTTTTTTAACCTTAGTCTTGAAAAGTAATAAGTATGGATTATGTC--TATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGATGTTAACAGTGTTAGTTCAGTACATAGACATGAGCGAGTCACTTCTTTCCCTTTCAAGATAACACTTTAAAGGTGCCACCGTTTACAGAAAAAAGCAGCGATTTAAATCAGTTATACTAGTACAGTTTAGAATACTTACAGTACGAGATGGAGTAGATACATTCTAG
i calJac3.chr10                 C 0 C 0
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=202458.000000
s hg38.chr15_KI270850v1_alt        147610 248 +    430880 AAATATTTACCTGTagtgggagttgaacagtgagaacacatgg--acacaggg-agtggggaacatcacacactggggcctgttgggggttggggggctaggggagggatagcattaggagaaatacctagtgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatataccccagaacttaaagtataataat-aagaaagaaaAAT
s panTro4.chr15_GL392289_random    144553 242 -    187897 AAATATTTACCCGTagtgggagttgaacagtgagaacacacgg--acacaggg-aggggggaacatgacacactggggcctgttgggggttggggggctaggggagggatagcattaggagacatacctagtgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatatacctcagaactt------taataat-aagaaagaaaAAT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79989543 249 +  99152023 AAATATTTACCTGTagtgggagttgaacagtgagaacacacgg--acacagggaaggggggaacatcatacactggggcctgttgggggttggggggctaggggaaggatagcattaggagaaatacctaatgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatataccccagaacttaaagtataataat-aagaaagaaaAAT
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106472110 245 - 171882078 AAATATTTACCTGTagtgggagttgaacagtgagaacacatgg--acacagag-----gggaacatcacacactggggcctgttgcggggtgtggggctaggggcgggatagcattaggagaaatacctagtgtagatgacaagttgatgggtgcagcaaaccactgtggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatgtacgccagaacttaaagtataataataaaaaaagaaAAAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102447779 247 - 162156779 AAATATTTACCTGtagtgggagttgagcaatgagaacacatggacacacagag-----gggaacatcacacactggggcctgttgcgggGTGTGGGGCTAGGGgcgggatagcattaggagaaatacctagtgtagatgacaagttgatgggtgcagcaagccactgtggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatgtacgccagaacttaaagtataataataaaaaaagaaaaat
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113950578   0 - 132174527 C
e chlSab2.chr29                   4013535   0 +  24206276 C
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=274788.000000
s hg38.chr15_KI270850v1_alt        147858 179 +    430880 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTTAACCTTT-----------------------------------------------------GAACTTAACAGATTGAGAGGGTAAACCTTTAAAAAATATATTTGGTCACACT--TACAGACTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
s panTro4.chr15_GL392289_random    144795 177 -    187897 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTT-----------------------------------------------------GAACTTAACAGATTGAG--GGTAAACCTTTAAAAAATATATTTGGTCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79989792 176 +  99152023 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATCGTAAACCTTT-----------------------------------------------------AAACTT-ACAGATTGAG--GGTAAACCTTTACAAATTATATTTGGTCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106472355 196 - 171882078 AAATATTTACCTGTTAAGGACATTTTCTGTATATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTAAACATTATGTTTGAT------------------------------------CAAACTT-ATAGATTGAG--GTTAAACCTTTAAAAATTATATTTGGTGACACTTATACAGAGTTAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448026 194 - 162156779 aaatatttacctgTTAAGGacattttctgtgtattttattcCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTAAACATTATGTTGGAT------------------------------------CAAACTT-ATAGATTGCG--gttaaacctttaaaaattatatttggtgACACT--TACAGAGTTAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4013535 193 +  24206276 AAATATTTACCTGTTAAGGACA-TTTCTATAGATTTTATTCCATTTTTCCATTAGTTTTCTGATGAAGAGATTGTAGTAAACCTTTAAAAATTATATTTGGT------------------------------------CAAACTT-ACAGATTGAG--GGTAAACCTTTAAAAATTATATTTGATCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113950578 229 - 132174527 AAATACTTATCTGTTAAGGACA-TTTCTATATATTTTATTTCATCTGTTCATTAGTTTTTGTATGAAGAGATTATAGTGAACCTTTAAAAATTATATTTGATCACACAGATTGAGGGTAAAAACATTAAAAATTTGAACAAACTT-ACAGATTGAG--GGTAAACCTTTAAATATTATATTTGATCACACT--TTGAGATTAAGGGTAAAGACATTCCTGACAAAGCTAGGCGAA
i calJac3.chr10                 C 0 C 0
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=21763.000000
s hg38.chr15_KI270850v1_alt        148037 34 +    430880 GACACTTGGAC-----tttttttttttttt------gagacggag
s panTro4.chr15_GL392289_random    144972 35 -    187897 GACACTTGGAC-----tttttttttttttt-----tgagatggag
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79989968 31 +  99152023 GACACTTGGAC-----ttttttttttc---------gagacggag
i ponAbe2.chr15                 C 0 C 0
s macFas5.chr7                  106472551 43 - 171882078 GAGACTTGGAAtttgtttttgttttttttt--ttttgagaaggaa
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448220 38 - 162156779 Gagacttggaa-----tttttttttttttt--ttttgagaaggaa
i papAnu2.chr7                  C 0 C 0
s calJac3.chr10                 113950807 40 - 132174527 GAAACTTGGAC-----TTTTGATGTTCCACACTTTTGAGATTGAG
i calJac3.chr10                 C 0 I 31
e chlSab2.chr29                   4013728  0 +  24206276 C
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=199597.000000
s hg38.chr15_KI270850v1_alt        148071 243 +    430880 tctcgctctgtcacccaggctggagtgcagtagcacgatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgcctctcccgagtagctgggactacaggcacacgccaccatgcctgactaatttttgtatttttagtagagacgg-ggtttcaccatattgaccaggctggtcttgaactcctgacctcgtgatccacccacctcagcctcctaaagtgctgggattac
s panTro4.chr15_GL392289_random    145007 243 -    187897 tctcgctctgtcacccaggctggagtgcagtagcacgatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgcctctcccgagtagctgggactacaggcacacgccaccattcctgactaatttttgtgtttttagtagagacgg-ggtttcaccatattgaccaggctggtcttgaactcctgacctcgtgatccacccgcctcagcctcctaaagtgctgggattac
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79989999 244 +  99152023 tctctctctgtcacccaggctggagtgcagtggcacaatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgcctctcctgagtagctgggactacaggcacgcgccaccatgcctgactaatttttgtatttttagtagagacggctttttcaccatattggccagactggtcttgaactcctgacctcatgatccacccgcctcaccctcctaaagtgttgggattac
i ponAbe2.chr15                 C 0 M 640
s macFas5.chr7                  106472594 243 - 171882078 tctcactctgtcacccaggctggagtgcagtggtgcgatcttggttcactgcaacctctgcctcccgggttcaagcgaatcttctgcctctgccgagtagctgggactataggcacgcaccaccatgtcttgctaacttttgtatttttagtagagctgg-ggtttcaccatattggccaggatggtcttgaactcctgacctcgtgatccccccgccttggcctccgaaagtgctgggattac
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448258 243 - 162156779 tctcacactgtcacccaggctggagtgcagtggtgcgatcttggttcactgcaacctctgcctcccgggttcaagcgaatcttcTGCctctgccgagtagctgggactataggcacgcaccaccatgtcttgctaacttttgtatttttagtagagctgg-ggtttcaccatattggccaggatggtctcgaactcctgacctcgtgatcctcccgccttggcctccgaaagtgctgggattac
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113950847  31 - 132174527 I
e chlSab2.chr29                   4013728   0 +  24206276 C
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=11246.000000
s hg38.chr15_KI270850v1_alt        148314 24 +    430880 aggcatgagccactgcacccggcT
s panTro4.chr15_GL392289_random    145250 24 -    187897 aggcatgagccactgcacccggcc
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106472837 24 - 171882078 aggcatgagccaccgcgcctgTCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448501 24 - 162156779 aggcatgagccaccgcgcctgtct
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113950847 31 - 132174527 I
e chlSab2.chr29                   4013728  0 +  24206276 C
e nomLeu3.chr6                  101773322 7475 + 121039945 I
e ponAbe2.chr15                  79990243 640 +  99152023 M

a score=298211.000000
s hg38.chr15_KI270850v1_alt        148338 237 +    430880 GAAACTTGGACTTTTGATGTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCCCTCTCTCTC--TCTTTCCCAGGTTAGGCTGTCTTATTGCTGTAAATGGGGAGAGAAGAGAAAGCCGTGGGTGGAAGAAAG--TGTTTCATggcctggtgcggtggctcatgcctgtaat---------------------------------cccagcactttgggagg
s panTro4.chr15_GL392289_random    145274 270 -    187897 GAAACTTGGACTTTTGATGTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCCCTCTCTCTC--TCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCCGTGGGTGGAAGAAAG--TGTTTCATGGCCTGGTGCGGTGGCTCATGCCTGTACTTTGGGAggccgaggcgggtgggtcacttgagttcccagcactttgggagg
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106472861 241 - 171882078 GAAACTTGGACTTTTGATGTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGACATCCATTTGGAAGTAGCTTTCCTCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgtggtggctgatgcctgtaat---------------------------------cccagcactttgggagg
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448525 241 - 162156779 gAAACTTCGACTTTTGATGTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACGGGCATCCATTTGGAAGTagcttccctctctctctgtctttcccaggTTAGGCTCTCTTACTGCTGTAaatggggagagaagagaaagctgtGGGTGGAAGAAAGTTTGTTTcatagcctggcacagtggctgatgcttgtaat---------------------------------cccagcattttgggagg
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4013728 241 +  24206276 GAAACTTGGACTTTTGATGTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCGTCCATTTGGAAGTAGCTTCCCTCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgcagtggctgatgcctgtaat---------------------------------cccagcactttgggagg
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113950878 241 - 132174527 GAAACTTGGACTTTTGATGTTCCCTTCATTTAACGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGAGGGGGACAGGCGTCCATTTGGAAGTAGCTTCCCTCTCTCACTCTCTCTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTTGGTGGAAGAAAGTTTGTTTCATggcctggctcagtggctcacgcctgtaat---------------------------------tgcagcattttgggagg
i calJac3.chr10                 I 31 C 0
e nomLeu3.chr6                  101773322 7475 + 121039945 I
e ponAbe2.chr15                  79990243 640 +  99152023 M

a score=383189.000000
s hg38.chr15_KI270850v1_alt        148575 246 +    430880 ccgaggcgggtggatcacttgagttcaggagttcaagaccagcctggccaacatggtgaaaccccgtttctactaaaaacagaaaaattagctgggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccaggagatggaggttgcagtgagccgagattgcaccacttcactccagcctggtcgacagagcgagaccttgtctcaaaaaaaaaa
s panTro4.chr15_GL392289_random    145544 246 -    187897 ccgaggcgggtgggtcacttgagttcaggagttcaagaccagcctggccaacatggtgaaaccccgtttctactaaaaacagaaaaattagctgggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccaggagatggaggttgcagtgagccgagattgcaccccttcactccagcctggtcgacagagcaagaccttgtctcaaaaaaaaaa
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79990894 245 +  99152023 ccgaggcgggtggatcacttgagttcaggagttcaagaccagcctggccaacatggcaaaaccccgtctctact-aaaacagaaaaattagctggacatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcgctt-gaactcgggagatggaggttgcagtgagccgagattgccccacttcactccagcctggtcgacagagcgagacctcgtctcaaaaaaaaaa
i ponAbe2.chr15                 M 640 C 0
s macFas5.chr7                  106473102 246 - 171882078 ccgaggtgggtgggtcacttgagttcaggagttcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatagaaaaattagctgggcatggtggcggtcacctgtaatctcagctgcttgggaggctgaggcaggagaattactt-gaacccggtcagtggaggttgcagtgagctgagattgcaccacttttcttcagcctggtggacagagcaagacctcgtctcaaaaaagaag
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102448766 246 - 162156779 ctgaggcgggtggatcacttgagttcagaagttcaagaccagcctggccaacatggcgaaaccctgtctctactaaaaatagaaaaattagctgggcatggtggcggtcacctgtaatctcagctacttgggaggctgaggcaggagaattgctt-gaacccagtcagtggaggttgcagtgagctgagattgcaccacttcacttcagcctggtggacagagcaagacctcgtctcaaaaaagaag
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4013969 246 +  24206276 ccgaggcgggcagatcagttgaggtcaggagatcaagaccagcctggccatcatggtgaaaccccatctctactaaaaatacagaaactaccccagcagggtggcggatgcctttaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccgggaggtggaggttgcagtgagccgagatcatgccactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaaaa
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 113951119 246 - 132174527 ccgaggtcagcggatcacttgaggtcaggaattcaagacccgcctgggcaacatggcgaaaccctgtctctactgaaaatacaaaaattagccaggcgttgtggcagacg-gtgtaatcctggctactggggaggctgaggcaggaaaatcgcttccaacttgggaggtgaaggttgcagtgagccgagatcacgccactgcactccagcctatgtgacagagtgtgactctatttcaaaaaaGGAA
i calJac3.chr10                 C 0 I 97551
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=5231.000000
s hg38.chr15_KI270850v1_alt        148821 13 +    430880 aaaaaaaaaaa--aa
s panTro4.chr15_GL392289_random    145790 13 -    187897 aaaaaaaaaaa--aa
i panTro4.chr15_GL392289_random C 0 I 2
s ponAbe2.chr15                  79991139 13 +  99152023 aaaaaaaaaaa--ga
i ponAbe2.chr15                 C 0 I 2
s macFas5.chr7                  106473348 11 - 171882078 aaagaaagata----
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102449012 11 - 162156779 aaagaaagata----
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4014215 13 +  24206276 aaaaaaaaaaaaa--
i chlSab2.chr29                 C 0 I 87700
e calJac3.chr10                 113951365 97551 - 132174527 I
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=568349.000000
s hg38.chr15_KI270850v1_alt        148834 672 +    430880 gtgtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgaaccaagcgattatcccacctcagcctcccaagtagctgggatcacatgcatgcaccgccatgcctggctaattttttt-atttttgtagagacagggtctctctgtgttgcccagcctggtctcaaactccctggatgaagcaatcctcccaccatggtctcccaaagtgtagggcttacaggcgtgagagccaccatgcccagcctgctggggtttttgattgacattgcattgaagctggaaatcagttaggaggcaactgacattttaataatgagccatgaacatggtatatctatgtatttagacctt---agatttttcgtcagtgttttgtagtttttagcaattggatcttgcttgcattttgtaatcttacacatttatttcatgt-ttgtggtactgttgtgaatgatacttctcaatttccagttggtgattgctagtatataggaagatgattttatgttatatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttttgtagatttttggaattttgtgcatagacagcaatgtcactggcaaa--taagggcagtttaatttctttgttttcactttgta
s panTro4.chr15_GL392289_random    145805 676 -    187897 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgaaccaagcggttatcccacctcagcctcccaagtagctgggatcacatgcatgcaccgccatgcctggctaattttttttatttttgtagagacagggtctctctatgttgcccagcctggtctcaaactcccgggatgaagcaatcctcccaccatggtctcccaaagtgtagggcttacaggcgtgagagccaccatgcccagcctgctggggtttttgattgacattgcattgaaactggaaatcagttaggaggcaactgacattttaataatgagccatgaacatggtatatctatttatttagaccttgttagatttttcgtcagtgttttgtagtttttagcagttggatcttgcttgtattttgtaatcttacacatttatttcatgt-ttgtggtacagttgtgaatgatacttctcaatttccagctggtgattgctagtatataggaagatgattttatgttatatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttttgtagatttttggaattttgtgcatagacagtaatgtcactggcaaa--taagggcagtttaatttctttgttttcactttgta
i panTro4.chr15_GL392289_random I 2 C 0
s ponAbe2.chr15                  79991154 674 +  99152023 gggtcccactcagttgcccaggctgaaacacagtggcaggatcactgctcactgcagccttgaaccaagtgattatcccacctcagcctcccaagtagctgggatcacatgcatgcaccaccctgcctggctaattttttt-atttttgtagagacagggtctctctgtgttgtccaggctggtctcaaactcctgggatgaagcagtcctcccaccatggtctcccaaagtgtagggcttacaggcgt--gagccaccatgcccagcctgctggggtttttgattggcattgcattgaagctggaaatcagttaggaggcaactgacattttaataatgagccatgaacatggtatatctatttagttagaccttcttagatttttcgtcagtgttttgtagtttttagcaattggatcttgcttgtattttgtaatcttacacatttatttcatgtgttgtggtactgttgtgaatgatacttctcaatttccagttggtcattgctagtatatatgaagatgattttatgttatatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttttgtagatttttggaattttgtgcatagacagtaatgtcactggcaaa--taagggcagtttaatttcttcattttcactttgca
i ponAbe2.chr15                 I 2 C 0
s macFas5.chr7                  106473359 672 - 171882078 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaattttttt-gtttttgtagagagaggatctctctatgttgcccaggctgctcttaaactccttggatgaagtgatcctctcaccgtgaactcccaaagtgtagggcttacaggtgt--gagccaccatgctcagcctgctggggtttttgattggcattgcattgaagctggaaatc----aggaggcaattgacgttttaataacgagccatgagcatggtatatctatttatttagacctttttagatttttcatcagtattttgtagtttttagcaattggatcttgcatgtattttgtaatcttatatatttatttcatgggttgtgatgctgttgtgaatgatacttttcaatttccagttggtcgttgctaggctataggaagatgattttatgttacatgctgaccttggattctacaaccttgctaaactcatttttagtgctagaagcttttttgtaaatttttggaattttgtgcatggacagtaatgtcactgccaaatttaagggcagtttaatttcttcattttcactttgta
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102449023 670 - 162156779 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaattttttt-gtttttgtagagagaggatctctctgtgttgcccaggctggtcttaaactccttggatgaagtgatcctctcatcgtgaactcccaaagtgtagggcttacaggtgt--gagccaccatgctcagcctgctGGGGTTTTTGATTGGCATTGCATTGAAGCTGGAAATC----AGGAGGCAATTGACGTTTTAATAACGagccatgagcatggtatatctatttatttagacCTTCTTAGatttttcatcagtattttgtagtttttagcaaTTGGATCTTGCATGTATTTTGtaatcttatatatttatttcatgggTTGTGATGCTGTTGTGAATGATACTTTTCAATTTCCAGTTGGTCATTGCTAGGATATAGGAAGATGATTTTATGTTACATGCTGACCTTGGATTCTacaaccttgctaaactcattttTAGTACTAGAagcttttttgtagatttttggAATTTTGTGCATAGACAGTAATGTCACTGGCAAA--TAAGGGcagtttaatttcttcattttcactttgta
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113951365 97551 - 132174527 I
e chlSab2.chr29                   4014228 87700 +  24206276 I
e nomLeu3.chr6                  101773322 7475 + 121039945 I

a score=11277.000000
s hg38.chr15_KI270850v1_alt        149506 18 +    430880 tacttttatttccttt---------tt
s panTro4.chr15_GL392289_random    146481 18 -    187897 tacttttatttccttt---------tt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79991828 14 +  99152023 tacttttatttcc-------------t
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101780797 18 + 121039945 tgCttttttttttttt---------tt
i nomLeu3.chr6                  I 7475 C 0
s macFas5.chr7                  106474031 22 - 171882078 tacttttattttctttcttt-----tt
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102449693 27 - 162156779 tacttttattttctttctttctttctt
i papAnu2.chr7                  C 0 C 0
e calJac3.chr10                 113951365 97551 - 132174527 I
e chlSab2.chr29                   4014228 87700 +  24206276 I

a score=17850.000000
s hg38.chr15_KI270850v1_alt        149524 15 +    430880 tttttttttgagacg
s panTro4.chr15_GL392289_random    146499 15 -    187897 tttttttttgagacg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79991842 15 +  99152023 tttttttttgagacg
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101780815 12 + 121039945 ttttttttaatg---
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106474053 15 - 171882078 tttttttctgagacg
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102449720 15 - 162156779 tctttttctgagacg
i papAnu2.chr7                  C 0 C 0
s calJac3.chr10                 114048916 15 - 132174527 ttttttttggagatg
i calJac3.chr10                 I 97551 C 0
e chlSab2.chr29                   4014228 87700 +  24206276 I

a score=673467.000000
s hg38.chr15_KI270850v1_alt        149539 323 +    430880 gagtttctctcttgttgcccaggctggagtgcaatggcgtgatctaggctcgctgcaacctctgcctcctgggttcaagcgattctcgtgcttcaccctccccagtagttggcattacaggcgcccgccaccacgcctggctaa-tttttgta-tttttagtagaaatagggtttcaccatgttggccaggatggtctc-aaactcctgacctcaggtgatctccctgc-------ctcggcctcccaaaatgctgggattataggtgtgagccaccgcttccggccTAAGAGGACACA--GTTTCTTTGGCTTATTAAGAGGTATTTGGTTAGT
s panTro4.chr15_GL392289_random    146514 323 -    187897 gagtttctctcttgtcgcccaggctggagtgcaatggcgtgatctaggctcgctgcaacccctgcctcctgggttcaagcgattcttgtgcttcagcctccccagtagttggcattacaggcgcccgccaccacgcctggctaa-tttttgta-tttttagtagaaatagggtttcaccatgttggccaggatggtctc-aaactcctgacctcaggtgatctccccgc-------ctcggcctcccaaaatgctgggattataggtgtgagccaccgcttccggccTAAGAGGACACA--GTTTCTTTGGCTTATTAAGAGGTATTTGGTTAGT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79991857 323 +  99152023 gagtttctctcttgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcctgggttcgagtgattctcgtgcttcagcctccccagtacctgggattacaggcacccgccaccatgcctggctaa-tttttgta-tttttagtagaaataaggtttcaccatgttggccaggatggcctc-aaactcctgacctcaggtgatctccctgc-------ctcggcctcccaaaatgctgggattataggcgtgagccactgcttccggccTAAGAGGACACA--GTTTCTTTGGCTTATTAAGCGGTATTTGGTTAGT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101780827 329 + 121039945 --gtttctctcttgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcctgggttcaagcagtcctcatgcttcagccttcccagtagctgggattacaggcgcctgccaccatgcctggctaa-tttttgta-tttttagtagaaatagggtttcaccatgttggccaggatggtctc-aaactcctgacctcaggtgatctccccgcaggtgatttcggcctcccaaaatgctgggattataggtgtgagccaccacatcc-gCCTAAGAGGACACACTGTTTCTTTGGCTTATTAAGAGGTATTTGGTTAGT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106474068 324 - 171882078 cagtttctctcttgttgcccaggctggaatgcaatggtgtgatctcatctcactgcaacctctgcctcctgggttcaagtgattctcgtgcttcagcctccccattagctgggattacaggcgcctgctaccacgcctggctaa-tttttgta-tttttagtagaaacagggtttcaccatgttggccaggatggtctc-aaactcctgacctcaggtgatctgcccgc-------ctcagcctcccaaaatgctgggattacaggcgtgagccaccgcttctggccCAAGAGGACACACTGTTTC-TTGGCTTATTAAGAGGTATTTGGTTAGT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102449735 324 - 162156779 cagtttctctcttgttgcccaggctggagtgcaatggcgtgatctcatctcactgcaacctctgcctcgtgggttcaagtgattctcgtgcttcagcctccccataggctgggattacaggcgcctgctaccacgcctggctaa-tttttgta-tttttagtagaaacagggtttcaccatgttggccaggatggtctc-aaactcctgacctcaggtgatctgcctgc-------cttagcctcccaaaatgctgggattacaggcgtgagccaccgcttctgGCCCAAGAGGACACACTGTTTC-TTGGCTTATTAAGAGGTATTTGGTTAGT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4101928 324 +  24206276 gagtttctctcttgttgcccaggctggagtgcaatggtgccatctgggctcactgcaacctctgcctcccaggttcaaatgattctcatgcttcagcctccccagtaactgggattacaggtgcctgccaccacactcggctaa-tttttgta-ttttttatagagatggggtttcaccatgttggccaggatggtctc-aaactcctga-ctgaggtgatgtacctgc-------cttggcctcccaaaattctgggattacaggtatgtgccacagcatccaaccTAAGGGGACACAGTGTTTCTTTGGCTTATTAAGGGGCATTTGGTTAGT
i chlSab2.chr29                 I 87700 I 2
s calJac3.chr10                 114048931 311 - 132174527 gagtctcact-ttgccacccagactggagtgcagtggcatgatcttggctcactgcaacctccgcctcctgggttcttggaattctcctgcctcagcctcctgagtagctgggactacaggtgcatgccgccacgcctggctaattttttgtagtttttagtagaggcggagtttcactgtgttgcccaggctagtctcgaaactcctgagctcaggcaatctacccac-------cttggcctcctaaagtgctaggattacaggtgtgagccactgtgcccagcc----------------TTCTTTGGCTTATTAAGAGGTATTTGGTTAGT
i calJac3.chr10                 C 0 C 0

a score=361032.000000
s hg38.chr15_KI270850v1_alt        149862 216 +    430880 GTTAGACcgggggttggtacattatagcttgctgactggatgtaccatgctgcctctttttataaatgaagttttattggaacacagccacacccattcatttacatattgtttaacagagaccatatgacctacagaccctaaaatatttaccactttgcgcttcgcaggcattttgctggctactgCTGTGGACACCAATTTTAATTTAGGTAG
s panTro4.chr15_GL392289_random    146837 216 -    187897 GTTAGACcgggggttggtacattagagcttgctgactggatgtaccatgctgcctctttttataaatgaagttttattggaacacggccacacccattcatttacatattgtttaacagagaccatatgacctacagaccctaaaatatttaccactttgcgcttcgcaggcattttgctggctactgCTGTGGACACCAATTTTAATTTAGGTAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79992180 216 +  99152023 GTTAGACcaggggttggtacattatagcttgctgactggatgtaacatgctgcctctttttataaataaagttttattggaacacagccacacccattcatttacatattgtttaacagagaccctatgacctgcagagcctaaaatatttaccactttgtgcttcacaggcactttgctgactactgCTGTGGACACCAATTTTAATTTAGGTAC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101781156 216 + 121039945 GTTAGACcaggggttggtacattatagcttgttgactggatgtaacatgctgcctctttttataaataaagttttattggaacacagccacacccattcatttacatattgtttaacagagatcatagtacctacagagcctaaaacatttaccaatttgcgcttcacaggcactttgctgaccactgCTGTGGGCACCAATTTTAATTTAGGTAT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106474392 211 - 171882078 GTTAGAGcaggggttggtacattatagcttgctgactggatttaacatgctgcctctttttataaataaatctttattggaacacagccacacccattcatttacatattgtttaacagagaccatatgacctgcagagcctaaaatatttacccatttgcgcttcacaggcactttgctgaccactgCTGTGGACACCAAT-----TTTAGGTAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102450059 211 - 162156779 GTTAGACCAGGGGTTGGTACATTATAGCTTGCTGACTGGATTTAACATGCTgcctctttttataaataaatctttattggaacacagccacacccattcatttacatattgtttaacagagaccatatgacctgcagagcctaaaatatttacccatTTGCGCTTCACAGGCACTTTGCTGACCACTGCTGTGGACACCAAT-----TTTAGGTAT
i papAnu2.chr7                  C 0 C 0
s calJac3.chr10                 114049242 210 - 132174527 GTTAGACcagaggttggtatgttataccttgctgactggatgtaacttgctgccttttt------ataaagttttgttggaacacagtcacacctactcatttacatgttgtttaacagagaccatatgaccttcagagcctaaaatacttaccagtttgcgcttctcaggcactttgctgaccactgCTGTGGACACCAGTTTTAATTTAGGTAT
i calJac3.chr10                 C 0 C 0
e chlSab2.chr29                   4102252   2 +  24206276 I

a score=952198.000000
s hg38.chr15_KI270850v1_alt        150078 442 +    430880 ATAAACTTTTTTGTAGCTTCTGAGGTTTTGCATTAATTTGCTCAGGCA-TATAGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCCAAACCAATCACACAGCCATATAACTTCATGCCTGAGTTTCTGTGTGGTCCTCTATAGTGAGTGAGTTTTTACATACTTCTTTGCA-GCAGCATGAATTTCAAAAATCTCAACGCTTTTGCTCTTGCTAATCTTTGTAAACTTTGTACACCCAGTGCTGGTACATTCTGATGATAGTGCCCACACTGCACTCTATGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCGGCAACTTTTGCTTCTCTAATCAGCAGCATCATAAGAGACTTACTATGTGTGGGCAATGGGGGAAAACGTTAATTTATACATTGAGATAGTTGTATTAAAATTGAGTGACTCT
s panTro4.chr15_GL392289_random    147053 442 -    187897 ATAAACTTTTTTGTAGCTTCTGAGGTTTTGCATTAATTTGCTCAGGCA-TATAGGTTGGTGGAAGTGCTTTCCGTTCCTTCTCCCAAACCAATCACACAGCCATATAACTTCATGCCTGAGTTTCTGTGTGGTCCTCTATAGTGAGTGAGTTTTTACATACTTCTTTGCA-GCAGCATGAATTTCAAAAATGTCAACGCTTTTGCTCTTGCTAATGTTTGTAAACTTTGCACACCCAGTGCTGGTACATTCTGATGATAGTGTCCACACTGCACTGTACGAAGAAAAGACTGATGATTATTTATATTAAAATGCAGGAAGAGAATTGTAGCGGCAACTTTTGCTTCTCTAATCAGCAGCATCATAAGAGACTTACTATGTGTGGGCAATGGGGGAGAATGTTAATTTATACATTGAGATAGTTGTATTAAAATTGAGTGACTCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79992396 443 +  99152023 ATAAACTTTTTTGTAGCTTCTGAGGTTTTGCATTAATTTGCTCAGGCA-TATAGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCCAAACCAATCACACAGCCATATAACTTCATGCGTGAGTTTCTCTGTGGTCCTCTATAGTGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCATGAATTTCAAAAATCTCAAAACTTTTGCTATTGCTAATCTTTGTAAACTTTGCACACCCAGTGCTGATACATTCTGATGATGGTGTCCACACTGCACTCTATGAAGAAAAGAATGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCGGCAACTTTTGCTTCTCTAATCAACAACACCGTAAGAGACTTACTATGTGTGGGCAATGGGGGAGAGTGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAGTGACTCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101781372 438 + 121039945 ATAAACTTTTTTGTAGCTTCTGAGGTTTTGCATTTATTTGCTCAGGCA-TATAGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCCAAACCAATCACACAGCCATATAACTTCATGCCTGAGTTTCTGTGTGGTCCTCTATAGTGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCATGAATTTCAAAAATCTCCAAA-TTTTGCTATTGCTAATCTTTGTAAACTTTGCACACCCAGCGCTGGTACATTCTGATGATGGTGTCCACACTGCACTCTATGAAGAGAAGACTGATGA----TTATATTAAAATGTAGGAAGAGAATTGTAGCAGCAACTTTTCCTTCTCTAATCAACACCACCATAAGAGACTTACTGTGTGTGGTCAATGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAGTGACTCT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106474603 434 - 171882078 ATAAACTGTTTTGTAGCTTCCAAGGTTTTGCAGTCATTTGCTCAGACA-TATGGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCC-AACCAATCACACAACCATGTAACTTCATGCCTGAGTTTCTGTGTGGTCCCCTATAGAGACTGAGTTTTTACATAGTTCTTTGCAGGCAGCATACATTTCAAAAATCTCCAAACTTTTGCTATTGCTAATCTTTGTGAACTTTGCATACCCAGCGCTGGTACATTCTGATG---GTGTCCACACTGCACTCTATGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCAGCAACTTTTGCTTTTCTAATCAA---CACTGTAAAAGACTTACTATGTGTGGGCAGTGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATCGAGTGA--CT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102450270 434 - 162156779 ATAAACTGTTTTGTAGCTTCCAAGGTTTTGCAGTCATTTGCTCAGACA-TATGGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCC-AACCAATCACACAACCATGTAACTTCATGCCTGAGTTTCTGTGTGGTCCCCTATAGAGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCATACATTTCAAAAATCTCCAAACTTTTGCTATTGCTAATCTTTGTGAACTTTGCATACCCAGCGCTGGTACATTCTGATG---GTGTCCACACTGCACTCTATGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCAGCGACTTTTGCTTCTCTAATCAA---CACTGTAAAAGACTTACTATGTGTGGGCAGTGGGGGAGaatgttaatttataaattgagaTAGTTGTATTAAAATCGAGTGA--CT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4102254 437 +  24206276 ATAAACATTTTCATAGCTTCTGAAGTTTTGCAGTCATTTGCTCAGACATTATGAGTTGGTGGAAATGCTTTCTGTTCCTTCTCCC-AACCAATCACACAACCATGTAACTTCATGCCTGAGTTTCTGTGTGGTCCTCTATAGTGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCATACATTTCAAAAATCTCCAAACTTTTGCTATTGCTAATCTTTGTGAACTTTGCATACCCAGCACTGGTACATTCTGATG---GTGTCCACACTGCACTCTATGAAGAAAAGACTGATGATTGTTTGTATTAAAATGCAGGAAGAGAATTGTAGCAGCAACTTTTGCTTCTCTAATCAA---CACTGTAAAAGACTTACTATGTGTGGGCAGTGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATCGAGTGACTCT
i chlSab2.chr29                 I 2 C 0
s calJac3.chr10                 114049452 433 - 132174527 ATTAACATTTCTGTAGCTTTTGAGGTTTTGTATTCATTTGCTCAGGCA-TATGGGTTGGTGGAGATGCTTTCTGTTA--TCTCCC-AATC-----CACAGCGATGTAACTTCATGGCTGAGTTTCTGTGTGGTCCTCTCTAGTGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCTTGAACTTAAGAAATCCCAAAACTTTTGCTATTGCTAATCTTTGTAAAC-TTGCACACCTAG-GCTGGTGCATTCTGATGATGGTGTTCACACTACATTCTGTGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCCACAAGTTTTGCTTCTCTAATCGGGAACACCATAAGAGACTTAATATATGTGGGCAGTGTGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAATgagtct
i calJac3.chr10                 C 0 I 180

a score=221730.000000
s hg38.chr15_KI270850v1_alt        150520 124 +    430880 TACTGTGACATAAAGTGAATGTGTCTCT--TATACAGCAGAAAACTATTAAATTTGTTTTTTCTCAGCAGTATAAAATAAAGTGGAAAATGTGGGAAGAATACAAATCCTTAACTTCTGTGCTTCT
s panTro4.chr15_GL392289_random    147495 126 -    187897 TACTGTGACATAAAGTGAATGTGTCTCTCTTATACAGCAGAAAACTATTAAATTTGTTTTTTCTCAGCAGTATAAAATAAAGTGGAAAATGTGGGAAGAATACAAATCCTTAACTTCTGTGCTTCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79992839 126 +  99152023 TATTGTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTATGAAATTTGTTTTTTCTCAGCAGTATAAAATAAAGTGGAAAATGTGGGAAGAATACAAATCCTTCACTTCTGTGCTTCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101781810 126 + 121039945 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTACTAAATTTGTTTTTTCTCATCAGTATAAAATAAAGTGGAAAATGTGGGAAGAATACAAATCCTTAACTACTGTGCTTCT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106475037 126 - 171882078 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTATTAAATGTGTTTTTTCTCAGCATTATAAAATAAAGTGGAAAATGTGGGAAGAATACAAGTCCTTAACTAGTGTGCTTCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102450704 126 - 162156779 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAActattaaatgtgttttttctcagcattataaaataaagtggaaaatgtGGGAAGAATACAAATCCTTAACTAGTGTGCTTCT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4102691 126 +  24206276 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGGAAACTATTAGATGTGTTTTTTCTCAGCATTATAAAATAAAGTGGAAAATGTGGGAAGAATACAAATCCTTAACTAGTATGCTTCT
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 114049885 180 - 132174527 I

a score=662292.000000
s hg38.chr15_KI270850v1_alt        150644 282 +    430880 GCTTATTTCACACCCCTCAAATTTCTGATTCCTTTCAACTGTAGCTGGCTTTACTACTGAGTGGTGAAATTGCTGAACATACTTAAAACTACATCATTTAAGACTTTGAATTTTGAC--ATCTCCTCCTCTTCACAGTCTTTCAAATACTAGGCAACCTGTAGGGTTCCACTGTGTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTGAGGAAGAAGTAGGATTTTCTCTCT
s panTro4.chr15_GL392289_random    147621 282 -    187897 GCTTATTTCACACCCCTCAAATTTCTGATTCCTTTCAACTGTAGCTGGCCTTACTACTGAGTGGTGAAATTGCTGAACATACTTAAAACTACATCATTTAAGACTTTGAATTTTGAC--ATCTCCTCCTCTTCACAGTCTTTCAAATACTAGGCAACCTGTAGGGTTCCACTGTGTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGTAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTGAGGAAGAAGTAGGATTTTCTCTCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79992965 282 +  99152023 GCTTATTTCACACCCCTCAAATTTCTGATTCCTTTCAACTGTAGCTGGCTTTACTACTGAGTGGTGAAATTGCTGAACATACTTAAAACCACATCATTTAAGACTTTGAATTTTGAC--ATTTCCTCCTCTTCACAGTCTTTCAAATACTAGGCAACCTGTAGGGTTCCACTGTGTCTGTCAGGTGTTGTCCCTGTGTTAGATGAAAGCAGCCCCAGTGAACTTGTGAATTTGGTCAGTCATTTCACTGGCTACTGGGTGAGGAAGAAGTAGGATTTTCTCTCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101781936 278 + 121039945 GCTTATTTCCCACCACTCAAATTTCTGATTCCTTACAACTGTAGCTGGCTTTACTACTGAGTGCTGAAATTGATGAACATACTTAAAACCACATCATTTAAGACTTTGAATTTTGAC--ATTTTCTCCTCTT--CAGTCTTTCAAATACTAGGCAACCTGTAGGGTTCCAC--TGTCTGTCATGTACTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTGAGGAAGAAGTAGGATCTTCTCTCT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106475163 282 - 171882078 GCTTATTTCACACCCCTCATATTTCTGATTCCTTACAACTATAGCTGGCTTTACTCCTGAGTGGTGAAATTGATGAACATACTTAAAACCACATCATTTAAGACTTTGCATTTTGAC--ATTTCCTCCTCTTCACATTCTTTCAAATACTAGGCAACCTGTAGGGTTCCACTGTCTCTGTCGTGTGTTGTCCCTGTGTTACATGAAAACAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTGAGGAAGAAGTAGGATTTTCTCTCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102450830 282 - 162156779 GCTTATTTCACACCCCTCATATTTCTGATTCCTTACAACTATAGCTGGCTTTACTCCTGAGTGGTGAAATTGATGAACATACTTAAAACAACATCATTTAAGACTTTGAATTTTGAC--GTTTCTTCCTCTTCATAGTCTTTCAAATACTAGGCATCCTGTAGGGTTCCACTGTCTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTTCTCAGTCATTTCACTGGCTACTGGGTGAGGAAGAAGTAggattttctctct
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   4102817 282 +  24206276 GCTTATTTCACACCCCTCAAATTTCTGATTCCTTACAACTATAGCTGGCTTTACTCCTGAGTGGTGAAATTGATGAACATACTTAAAAGCACATCATTTAAGACTTTGAATTTTGAC--ATTTCCTCCTCTTCACAGTCTTTCAAATACTAGGCAACCTGTAGGGTTCCATTGTGTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTGAGGAAGAAGTAGGATTTTCTCTCT
i chlSab2.chr29                 C 0 n 0
s calJac3.chr10                 114050065 284 - 132174527 GCTTATTTCATACCCCTCAAATTTCTGATTCCTTATAACTGTAGTTGACTTTACTACTGAGTGGTAAAATTGATGAACATAGTTAAAACCATATCATTTAAGACTTTGAATTTTGACATATTTCCTCCTCTTGACAGTCTTTCAAATAGTAGGCAACCTGTGCTGTGCCACTGTGTCTGTCATGTACTGTTTCTGTGTTACATGAAAGTAGCCCCAGTGACCTTGTGAATTTGCTCAGTCATTTCACTGGTTACAGGGTAAGGAAGAAGTAGGATTTTCTCCCT
i calJac3.chr10                 I 180 C 0

a score=3580846.000000
s hg38.chr15_KI270850v1_alt        150926 1623 +    430880 TAAAATTCCTTGGTGAAATCATTGGATGGGCACGGTGTGTT-------TCTTT-----------------AATTTTCCTT----------TTGGTCAAAAATCTGACAAAGCAAAGACTTTCAGTTGTTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTCTACTCTGACCAAAAATTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGAGTTTGTTTGTTTAAATGTATAAAAATAAGTTAATGCATTCTATGCAGCGAGGTTTTGCATCAGAACCCTGAGTTCTCAA---TGTGGCAGG-TTTAAGtgtc------------------------------------------------------------tagaacaccttttacctgttttttctattacttgcttttttatttttggggtaaatgatatct-ttctcagggaggccttccctcagcaccatgtttaagagggcatctccctcatttgctattccttcttctgttttattttgctatatggaatttgctactatgtgaaaac----tattttaatgttttatttacctgtgttacccctagaataatatctatgaaggtagggatttttatctgttccttctgtgcctacagagtgttgaggagtatggtgtctggcacgttgtaggtgcacagtgacagctgaattaataaCGTCAGGGAGAGTTTGTAGGAT-GGGGCTCAAGGTGTAGGGCAAGTCAGTTTTTAGATTTGAGGTTATTAGCAGGAG--------ACgatgtgggggg--aaaacacatgttttaatgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaataatttaacctttgaaagatcaa-ctttttcactagtgaaac--gggaaatagtatctttttaatggggattaaatgtaatatcaaatataatgctctGTAAATGTTAGTTTTGTCTTTCCCCTTGTGTGCCAGCATTGTGGAAGTCTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTGCATTGCCAGCATAACAATGACCTGTCCCTTTGACCAGTGTGGG-GGACAGACACTTTGTCATCCCTCTTTTAATCCGTGTATCAGAACAACTCCTACAAGTTCTGGCTTTGAAACATGTTTAGAGGAGTTTATAATTCCGAACAGTTCAGATGACATCAGCCCTTTCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAGTGTGGCGGGAACCATTCAGTTAAATTGATGTTTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCAAATCATGAGCTATCAGAGGGCTACTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATCcaagcttgtccaaccgcagcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaatacaaattcgtaaacgttcttaaaacattggccgggcacggtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacgaaaattagctgggcatggtggcacacgcctatcatcccagctactcgggaggctgag
s panTro4.chr15_GL392289_random    147903 1623 -    187897 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGGTGTGTT-------TCTTT-----------------AATTTTCCTT----------TTGGTCAAAAATCTGACAAAGCAAAGACTTCCAGTTGTTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACCAAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGAGTTTGTTTGTTTAAATGTATAAAAATAAGTTAATGCATTATATGCAGCGAGGTTTTGCATCGGAACCCTGAGTTCTCAA---TGTGGCAGG-TTTAAGTGTC------------------------------------------------------------TAGAACACCTTTTACCTGTTTTTTCTATTACTTGCTTTTTTATTTTGGGGGTAAATGAGATct-ttctcagggaggccttccctcagcaccatgtttaaaagggcatctccctcatttgctattccttcttctgttttattttgctatatggaatttgctactatgtgaaaac----tattttaatgttttatttacctgtgttacccctagaataatatctatgaaggtagggatttttatctgttccttctgtgcctacagagtgttgaggagtatggtgtctggcacgttgtaggtgcacagtgaCAGCTGAATTAATAACGTCAGGGAGAGTTTGTAGGAT-GGGGCTCAAGGTGTAGGGCAAGTCAGTTTTTAGATTTGAGGTTATTAGCAGGAG--------ACgatgtgggggg--aaaacacatgttttaatgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaataatttaacctttgaaagatcaa-ctttgtcactagtgaaac--gggaaatagtatctttttaatggggattaaatgtaatatcaaatataatgctctGTCAATGTTAGTTTTGTCTTTCCCCTTGTGTGCCAGCATTGTGGAAGTCTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTGCATTGCCAGCATAACAATGACCTGTCCCTTTGACCAGTGTGGG-GGACAGACACTTTGTCATCCCTCTTTTAATCCGCGTATCAGAACAACTCTTACGAGTTCTGGCTTTGAAACATGTTTAGAGGAGTTTATAATTCCGAACAGTTCAGATGACATCAGCCCTTTCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAGTGTGGCGGGAACCCTTCAGTTAAATTGATGTTTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCAAATCATGAGAGATCAGAGGGCTACTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATCcaagcttgtccgaccgcggcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaatacaaattcgtaaacgttcttaaaacattggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacgaaaattagctgggcatggtggcacgcgcctatcatcccagctactcgggaggctgag
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79993247 1641 +  99152023 TAAAATTCCTCGGTGAAATCATTGGATGGGCATGGTGTGTT-------TCTTT-----------------AATTTTCCTT----------TTGGTCAAAAATCTGACAAAGCAAAGACTTTCAGTTGGTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACCAAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGAGTTTGTTTGTTTAAATGTAT-AAAATAAGTTAATGCATTATATGCAGTGAGGTTTTGCATCAGAACCCTGAGTTCTCAATGTTGTGGCAGG-TTTAAGTGTC------------------------------------------------------------TAGAACACCTTTTACCTGTTTTTTCTGTTACTTGCTTTTTTATTTTTGGGGTaaatgttatct-ttctcagggaggccttccctcagcaccgtgtttaaaagggcatctccctcatttgctgttccttcttctgttttatttttctctataggacttgttactatgtgaaaactatttattttaatgttttatttacctgtgttacccctagaataatatctatggaggtagggatttttgtctgttccttctgtgcctacagagtcttgaggagtatgctgtctggcacgttgtaggtgcacagtgaCAGCTGAATTAACAACGTCAGGAGGAGTTTGTAGGAT-GGGGCTCGAGGTGTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAAATCCTCTCATGATGTTGGGggaaaaaacacatgttttaacgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaatgatttaacatttgaaagatcaa-ttttttcactagtgaaataggggaaatagtatctttttaatggggattaaatgcaatatcaaatataatgctctGTAAATGTTAGTTTTGTCTTTCCCCTTGTGTGCCAGCATTGTGGAAGTCTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTGCGTTGCCAGCATAACAATGACCTGTCCCTTTGGCCAGTGTGGG-AGACAGACACTTTGTCATCCCTCCTTTAATCCGTGTATCAGAACAACTCTTACGAGTTCTGGCTTTGAAACATGTTTAGAGGAGTTTATAATTGCAAACAGTTCAGATGACATCAGCCCTTTCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAGTGTGGCGGGAACCATTCAGTTAAATTGATGTTTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCAAATCACGAGACATCAGAGGGCTGCTAAGTCACTAGTTTGTCTCTGTAGATTGCTCTAATCcaagcttgtctaaccgcggcctgcaggctgcatgcagcctgtgaaggctttgaatgtagcccaatacaaattcgtaaactttcttaaaacattggctgggcatggtggctcacacctgtaatcccagcattttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagactagcctggccaacatggtgaaaccccgtatctactaaaaatacaaaaattagctggctgtggtggcatgcacctgtcatcccagctactcgggaggctgag
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101782214 1606 + 121039945 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGGTGTGTT-------TCTTT-----------------AATTTTCCTT----------TTGGTCAAAAATC------AGCAAAGACTTTCAATTGGTCTTGGTCTTTCAATAGGTTTAGTTTTTCAGTGTGTTTACTCTGACCAAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGAGTTTGTTTGTTTAAATGTAT-AAAATAAGTTAATCCATTATATGCAGCGAGGTTTTGCATCAGAACC--GAGTTCTCAGTGTTGTGGCAGG-TTTAAGtgtc------------------------------------------------------------tagaacacctttcacctgttatttctattacttgcttttttatttttggggtaaatgatatct-tt-tcagggaggtcttccctcagcaccatgtttaaaatggcgtctccctcatttgctattccttcttctgttttatttttctctatagaatttgttactatgtgaaaactatttattttaatgttttatttatctgtgttacccctagaataatatctatgaaggtagggatttttgtctgttccttctgtgcctgcagagtcttgaggagtatggtgtctggcacattgtaggtgcacaatgaCAGCTGAATTAACAATGTCAGGGAGAGTTTGT--------------------------AGTCAATTTTTAGATTTGAGGTCATTAGCAGGAAATCTTCTTAtgatgtggaggg-aaaaacccatgttttaacgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaatgatttaacctttgaaagatcaa-ttttttcactagtgaaataggggaaatagtatctttttaatggggattaagtgtaatatcaaatataatgctctGTAAATGTTAGTTTTGTCTTTCCCCTTGTGTGCCAGCATTGTGGAAGTTTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGTCTGTATTGCCAGCATAACAGTGACCTGTCCCTTTGACCAGTGTGAG-GGACAGACACTTTGTCATCCCTCTTTTAATCCGTGTATCAGAACAACTCTTACGAGTTCTGGCTTTGAAACATGTTTAGAGGAGTTTATAATTCCAAACAGTTCAGATGACATCAGCCCTTTCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAGTGTGGTGGGAACCATTCAGTTAAATTGATGTCTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCAAATCACGAAACATCAGAGGGCTACTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATCcaagcttgtccaaccgcggcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaatacaaattcgtaaactttcttaaaacattggccgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaattagctgggcgtggtggcacgcgcctataatcccagctactcgggaggctgag
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106475445 1678 - 171882078 TAAAATTCCTTGGTGAAATCACTGGATGGGCATGGTGTGTT-------TCTTT-----------------AATTTTCCTT----------TTGGTCAAAAATCTGACAAAGCAAAGACTTTCAGTGGGTCTTGGTCTTTCAATAGATTTAGTTTTTAAGTGTGTTTACTCTGACCGAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGA----GTTTGTTTAAATGTAT-AAAATAAGTTAATGCATTATATGCAGTGAGGTTTCACATCAGAACCCTGAGTTCTCAATGTTGTGGCAGG-TTTAAGTGTCACCTTTTACTTTTAAAGTAAGGTGACACTTAAAGGTAAAACACTTAAAGATGTTAAAAGGTAAAACATCTTTTACCTGATTTTtctcttacttgcttttttatttttgaggtaaatgatatct-ttctcagggtggccttccctcagcaccatgtttaaaatggcatctccttcatttgctattc---cttgtgttttatttttctctatagaatttgttactgtgtgaaagctatttattttaatgttttatttacctgtg-tacccctagaataatatctatggaggtagagatttttgtctgttccttctgtccctacagaatcttgaggagtatggtgtctggcacattgtgggtgcacaatgaCAGCTGATTTAACAACTTCAGGGAGAGTTTGTAGGATGGGGGCTCGAGGTGTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTAtgatgtggggga--aaaacacatgttttaacatcagactgggtttggatctggtctctccaacttaccctttgaccttggtgttaaataatgtaacctttgaaagatcag-ttttttcagtggtgaagtaggggaaatactatctttttaatggggattaaatgtaataTAAAATATAATGCTCTGTGAATGTTAGTTTTGTCTTTCTCCTTGTGTGCCAGCATTGTGGAAGTCTAAAAGCAACCTGCATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTCCTTTTGACAGATACATTCTTTTCAGCAGCTTGTGTTGCCAGCATAACAATGTCCTGTCCCTTTGACCAGTGTGGG-GGACAGACACTTTGTCATCCCTTTTTTAATCCGTGTGTCAGAACAACTCTTATGAGTTCTGGCTTTGAAATATATTTAGAGGAGTTTATAATTTCAAACAGTTCAGATGACATCAGCCCTTTCTTATAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAATGTGGTGGGAACCATTCAGTTAAATTGATGTTTGTCGTCTTTATGCATAGTCATCCTAAGTTTCTTGCAAATCACGAAAGATCAGAGGGCTGCTAGGTCACTAGTTTGTCTTTGTAGATTTCTCTAATCcaagcttgtccaactgcgtcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaacacaaattcacaaactttcttaaaacattggccgggcatggtggctcacgcctgtaatcctagcactttaggaggccgaggcgggtggatcacctgagg-caggagttcgagaccagcctggccagca-------------tctctactaaaaatacaaaaattagctgggcgtggtggcatgcgcctataatcccagctacttgggaggctgag
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102451112 1678 - 162156779 taaaattcCTTGGTGAACTCATTGGATGGGCATGGtgtgtt-------tcttt-----------------aattttcctt----------ttggtcAAAAATCTGACAAAGCAAAGACTTTCAGTGGGTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACCGAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAAAACTGTTCTTAAGTAGA----GTttgtttaaatgtat-aaaataagttAATGCATTATATGCAGCGAGGTTTTGCATCAGAACCCTGAGTTCTCAATGTTGTGGCCAG-TTTAAGTGTCaccttttacttttaaagtaaGGCGACACTTAAAGGTAAAACACTTAAAGATGTTAAAAGGTAAAACATCTTTTACCTGATTTTTCTCttacttgcttttttatttttggggtaaATGATATCT-TTCTCAGGGTGGCCTTCCCTCAGCACCATGTTTAAAATGGCATCTCCTTCATTTGCTAttc---cttgtgttttatttttctctatagaaTTTGTTACTGTGTGAaagctatttattttaatgttttatttacctGTG-TACCCCTAGAATAATATCTATGGAGgtagagatttttgtctgttccTTCTGTACCTACAGAATCTTGAGGAGTATGGTGTCTGGCACATTGTGGGTGCACAATGACAGCTGAATTAACAACATCAGGGAGAGTTTGTAGGATGGGGGCTCGAGGTGTAGGGCAAGTCAGGTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTATGATGTGGGGGA--AAAACACATGTTTTAACATCAGACTGGATTTGGATCTGGTCTCTCCAACTTACCCTTTGACCTTGGTGTTAAATAATGTAACCTTTGAAAGATCAG-TTTTTTCAGTGGTGAAGTAGGGGAAATAGTATCTTTTTAATGGGgattaaatgtaatataaaatataatgctcTGTGAatgttagttttttctttctccttgtgtgCCAGCATTGTGGAAGTCTAAAAGCAACCTGCATTTACCAGTCTGTTTCTGGAGCCTCCTGGGGTCATTACTTTGATTCCTTTTGACAGAAACATTATTTTCAGCAGCTTGTGTTGCCAGCATAACAATGTCCTGTCCCTTTGATCAGTATGGG-GGACAGACACTTTGTCATCCCTCTTTTAATCCATGTATCAGAACAACTCTTATGAGTTCTggctttgaaatatatttagagGAGTTTATAATTTCAAACAGTTCAGGTGACATCAGCCCTTTCTTATAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAATGTGGTGGGAACCATTCAGTTAAATTGATGTTTGTCGTCTTTATGCATAGTCATCCTAAGTTTCTTGCAAATCACGAAAGATCAGAGGGCTGCTAGGTCACTAGTTTGTCTTTGTAGATTTCTCTAATCCAAGCTTGTCCAACTGCGTCCTGCAGGCTGCATGCAGCCTGTGaaggctttgaatgtggcccaacacaaattcacaaactttcttaaaacattggccgggcatggtggctcacgcctgtaatcctaacactttaggaggccgaggcgggtggatcacctgagg-caggagttcgagaccagcctggccagca-------------tctctactaaaaatacaaaaattagctgggcgtggtggcatgcgcctataatcccagctactcgggaggctgag
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20314343 1674 -  24206276 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGGTGTGTT-------TGTTT-----------------AATTTTCCTT----------TTGGTCAAAAATCTGACAAAGCAAAGACTTTCAGTGGGTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACCGAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGA----GTTTGTTTCAATGTAT-AAAATAAGTTAACGCATTATATGCAGTGAGGTTTTGCATCAGAACCCTGAGTTCTCAATGTTGTGGCAGG-TTTAAGTGTCACCTCTTACTTTTAAAGTAAGGTGACACTTAAAGGTAAAACACTTAAAGATGTTAAAAGGTAAAACATCTTTTACCTGATTTTtctcttacttgcttttttatttttggggtaaatgatatct-ttctcagggtggccttccctcagcaccatgtttaaaatggcatctccttcatttgctattc---cttgtgttttatttttctctatagaatttgttactgtgtgaaagctatttattttaatgttttatttacctgtg-tacccctagaatagtctctatggaggtagcgatttttgtctgttccttctgtacctacagaatcttgaggagtatggtgtctggcacattgtgggtgcacaatgaCAGCTGAATTAACAACTTCAGGGAGAGTTTGTAGGAT-GGGGCTGGAGGTGTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTAtgatgtggggga--aaaacacatgttttaacatcagactgggtttggatctggtctctccaacttaccctttgaccttggtgttaaataatgtaacctttgaaagatcagtttttttcagtggtgaagtaggggaaatagtatctttttaatggggattaaatgtaataTAAAATATAATGCTCTGTGAATGTTAGTTTTTTCTTTCTCCTTGTGTGCCAGCATTGTGGAAGTCTAAAAGCAACCTAAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTCTGATTCCTTTTGACAGATAAATTCTTTTCAGCAGCCTGTGTTGCCAGCATAACAATGTCCTGTCCCTTTGACCAGTGTGGG-GGACAGACACTTTGTCATCCCTCTTTTAATCCGTGTATCAGAACAACTCTTATGAGTTCTGGCTTTGAAATATATTTAGAGGAGTTTATAATTTCAAACAGTTCAGATGACATCAGCC----CTTATAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAATGTGGTGGGAACCTTTCAGTTAAATTGATGTTTGTCGTCTTTCCACATCGTCATCCTAAGTTTCTTGCAAATCACGAAAGATCAGAGGGCTGCTAGGTCACTAGTTTGTCTGTGTAGATTTCTCTAATCcaagcttgtccaactgcgtcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaacacaaattcacaaactttcttaaaacatGggccgggcatggtggctcacacgtgtaatcctagcactttaggaggctgaggcgggtggatcacctgagg-caggagttcgagaccagcctggccaaca-------------tctctactaaaaatacaaaaattaactgggtgtggtggcatgcgcctataatcccagctactcgggaggctgag
i chlSab2.chr29                 I 10 I 1365
s calJac3.chr10                 114050349 1619 - 132174527 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGGTATTTTAAAACACCATTTTAAAAAGGAAAATTAAAAATTTTCCTTTTGTAAAGGCTTGGTCAAAAATCTGACAAAGCAAAGACTTTCAGTTGGTCTTGGTCTTTCAATATGTTTAGTTATTAAGTATGTTTACTCTGACCAAAACCTGCCTTCTTTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGAGTGAGTTTGTTTAAATGTGT-AAAATAAGTGAATGCATTATATGCAGCAAAGTTTTGCATC-GAACCCTGAGTTCTCAATGTTGTGGCAAGTTTTAAGTGTG------------------------------------------------------------CAGAACACTTTTTACCTGTTATTTCTGTTACCTAT-------TTTTGAGGGGGGGCGGTAACTGttctcagggaggccttccctcagcaccatgtttaaattgccatccccctcatttgctatttcttcttctgttttatttttctctacagaatttgttactatctgaaaacta-----ttcaatgttttatttacttgtgttacccctagaataatatctacgaaggtagggatttttctcggatccttctgtacctgcagagcttcga----------gtgtggtacactgtagatgcacaataat-gctgaattaaCAATGTCATGGAGAGTTTGTAGAAT-GGAGCTAGAGGTGTAGGGCAAG------TTTAGATTTGAGGTTGTTAGCAGGAGATTGTCTTAtgatgtgaaggg-aaaaacacatgttttagtgtcagactgggtttgaatctggt-tcttcaacttaccctttgacgttggtgttaaataatttaacctttgaaagatcag-ttttttcacgagtgaaatgggggaaa---tatctttttaatgaggattaaatgtaatatcaaacataatgctctgtacaTGTTAGTTTTGTCTTTCCCCTTATGTGCCAGCATTGTAAAAGTCTAAAAGCAACCTGAACTTACCAGTTTCTTTCTGGAGCGCTCTGGGGTCATTACT-TGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTATGTTGCCAACGTAACAATGACCTGTACCTTTGACCAGTGTGGGAGGACAGACAGTTTGTCATCCCTCTTTTAATCCATGTATCAGAACAACTCTTAAGAGTTCTGGCTTTGAAATATGTTTAGAGGAGTTTATAATTCCAAACAGTTCAGATGACATCAGCTCTTCTTTAGAGTCCTCTGAGTTTGCTCAGTTTCCTCATTCCAATGCGGTGGGAACCATTTAGTTAAATTGAAGTCTGTGGTCTTTACGCATAGTCATCCTAAGTTTCTTGCAGATCATGAAACATCAGAGGTCTGCTAAGTCATTGGTTTGTCTCTGTAGATTTTTCTAATCcaagcttgtccagccgcagcctgca------------------aaggctttgaatgtggcccaacacaagttcataaactttctgaaaacattggctgtgcccggtggctcatacctgtaatcccagaactttgggaagccaaggcaggtagatcacctgaggtcaggagtttgagaccagtctgtccaacatggtgaaaccctttctctacttaa------aaaattaactgggcatggtgatgggagcctgtaatcccagctacttgggaggctgag
i calJac3.chr10                 C 0 C 0

a score=157875.000000
s hg38.chr15_KI270850v1_alt        152549 98 +    430880 gcaggagaatggcttgaactcaggaggcagaggttgcagtgagccaagatggtgccactgcactccggcctgggtgacagagtgaggctccacctcac
s panTro4.chr15_GL392289_random    149526 98 -    187897 gcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaagatggtgccactgcactccagcctgggtgacagagtgaggctccatctcac
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79994888 98 +  99152023 gcaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagatggtgccactgcactccagcctgggtgacagagtgagactccatctcaa
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101783820 98 + 121039945 gcaggagaatcacttgaacccaggcggcagaggttgcagtgagccaagatggtgccactgcactccagcctgggtgacagagtgagactccatctcaa
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106477123 98 - 171882078 gcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggtgacagagtgagactccatttcca
i macFas5.chr7                  C 0 I 4
s papAnu2.chr7                  102452790 98 - 162156779 gcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggtgacagagtgagactccatttcca
i papAnu2.chr7                  C 0 I 4
s calJac3.chr10                 114051968 89 - 132174527 gcaggagaattgcttgaatccaggaggcag-------agtaagccaagattatactactgcactaaagcctgggcaacagggtgagactctgtctt--
i calJac3.chr10                 C 0 C 0
e chlSab2.chr29                  20316017 1365 -  24206276 I

a score=27881.000000
s hg38.chr15_KI270850v1_alt        152647 12 +    430880 aacaaacaaaaa
s panTro4.chr15_GL392289_random    149624 12 -    187897 aacaaacaaaaa
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79994986 12 +  99152023 aacaaacaaaaa
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101783918 12 + 121039945 aacaaacaaaaa
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106477225 12 - 171882078 aacaaacaaaaa
i macFas5.chr7                  I 4 C 0
s papAnu2.chr7                  102452892 12 - 162156779 aacaaacaaaaa
i papAnu2.chr7                  I 4 C 0
s chlSab2.chr29                  20317382 12 -  24206276 AACAAACaaaaa
i chlSab2.chr29                 I 1365 C 0
s calJac3.chr10                 114052057 11 - 132174527 -aaaaacaaaGA
i calJac3.chr10                 C 0 I 1515

a score=95098.000000
s hg38.chr15_KI270850v1_alt        152659 59 +    430880 att-atgagattttccttttttgcaa---------tttttttaaagcttagcagctattattagtgttc
s panTro4.chr15_GL392289_random    149636 59 -    187897 att-atgagattttctttttttgcaa---------ttttctgaaagcttagcagctattattagtgtta
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79994998 60 +  99152023 att-atgagcttttctttttttgcga--------ttttttttaaagcttagcagctattattagtgtta
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101783930 60 + 121039945 attaatgagattttctttttttgcaa---------tttttttaaagcttagcagctattactagtgtta
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106477237 63 - 171882078 att-gtgagattttctttttttgcaa-----tttttttttttaaagcttagcggctattattagtgtta
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102452904 66 - 162156779 att-gtgagattttctttttttgcaa--ttttttttttttttaaagcttagcagctattattagtgtta
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20317394 68 -  24206276 att-gtgagattttctttttttgcaattttttttttttttttaaagcttagcggctattattagtgtta
i chlSab2.chr29                 C 0 C 0
e calJac3.chr10                 114052068 1515 - 132174527 I

a score=1678986.000000
s hg38.chr15_KI270850v1_alt        152718 755 +    430880 gtgtattttatgtgtggcacaagacaa---ttcttcttccagcgtggcccagggaagccagaagattggatcccgctTCTTTAAGTTTTATGGATTAACAAGGGGTTAATTCCTGTATCAGTTTCACTGATGTTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATAGGTTCTTTCATTCCCATGTCCTAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAATTGTAAATTAAATGGATATTTAATACATTAAG-AAGGCACTCAAGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGATATTGACCTTGTTCTTCTTGTAAAAAT----GTTGGTTATTGCTGCCTTTCTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCACCTAAAAGTACAAAGTCATTAAGTGAAGGCAGTCAGGAAGGAAAGAGTGCCCTGAGCCAGGAGGTCTGTTACAGCacatggggtggacaagaaaatgaatggacatgggc------atggaGGTGGTTCAGTCAGTGTGGGAAGGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACGTTGAAGCTTGGGGCCTGCAACTCGTGTAGAGATGA-TTGCATTTAGGAGGCTGAGGTAGATTTTTTCCCTCTTAAGTGTGTGCTCACTGCTTTTTGGCGAAGTCTTG
s panTro4.chr15_GL392289_random    149695 755 -    187897 gtgtattttatgtgtggcgcaagacaa---ttcttcttccagcgtggcccagggaagccagaagattggatcccgctCCTTTAAGTTTTATGGATTAACAAGGGGTTAATTCCTGTATCAGTTTCACTGATGTTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATAGGTTCTTTCATTCCCATGTCCTAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAATTGTAAATTAAATGGATATTTAATACATTAAG-AAGGCACTCAAGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGAAATTGACCTTGTTCTTCTTGTAAAAAT----GTTGGTTATTGCTGCCTTTCTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCACCTAAAAGTACAGAGTCATTAAGTGAAGGCCGTCAGGAAGGAAAGAGTGCCCTGAGCCAGGAGGTCTGTTACAGCACATGGGGTGGACAAGAAAATGAATGGACATGGGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAGGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACGTTGAAGCTTGGGGCCTGCAACTCGTGTAGAGATGA-TTGCATTTAGGAGGCTGAGGTAGATTTTTTCCCTCTTAAGTGTGTGCTCACTGCTTTTTGGCGAAGTCTTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79995058 753 +  99152023 atgtattttatgtgtggcgcaacacac---ttcttcttccagtgtggcccagggaagccagaagattggatacTGCTCCTTTAATTTTTATGGATTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATATTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATAGGTTCTTTCATTCCCATGTCCTGGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAATTGTAAATTAAATGGATATTTAATACATTGAG-AAGGCACTCAAGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTGTTTGAATCTGATGGGCTTGAAATTGACCTTGTTCTTCTTGTAAAAAT----GTTGGTTATTGCTGCCTTTCTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCACCTAAAAGTACAAAGTCATTAAGTGAAGACAGTCCAGAAGGAAAGAGTGCCCTGAGCCAGGAGGTCTGTT-TAGCGCATGGGGTGGACCAGAGAATGAATGGGCATCGAC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTCTCAGCTTTCTACTGCGTTGTCCAGCAGAACACATTGAAGCTTGGGGCCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGA-TTTTTCCCTTTTAAGTGTGTGCTAACTGCTTTTTGGCGAAGTCTTG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101783990 758 + 121039945 gtgtattttatgtgtggcacaacacaattcttcttcttccagtgtggcccagggaagccagaagattggataccactCCTTTAATTTTTATGGATTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATGTTTCTTCTACTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGACTGGTCCATAAATTTATAGGTGCTTTCATTCCCATGTCCTAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAACACAGTGAGCTTAATTGTAAATTAAATAGATATGTAATACATTGAG-AAGGCACTCAGGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGAAATTGATCTTGTTCTTCTTGTAAAAAC----GTTGGTTATTGCTGTCTTTCCCAAGTTTGGTTTTCAGTGTGGATTTCTGCAGATAATATTTGCACCTAAAAGTACAAAGTCATTAAGTGACGGCAGTCAGGAAGGAAAGAGTACCCTGAGCCAGGAGGTCTGTTGTAGCGCATGGGGTGGACCAGAGAATGAATGGGCATGGGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTACGTTGTCCAGCAGAACACACTGAAGCTTGGGACCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTGTGCTCACTGCTTTTTGGTGAAGTCTTG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106477300 754 - 171882078 gtgtattttatgtgtggtgcaagacag------ttcttccagtgtggcccagggaagccagaagattggataccgctCCTTTAATTTTTATGGATTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATATTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATACATTTATGGGTTCTTTCATTCCCATGTCCCAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAATTGTAAATTAAATGGATATTTAATACATTGAT-AAGGTCCTCAAACCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGAAATTGAC--TGTTCTTCTTGTAAAAATGTTGGTTGGTTATTGCTGCCTTTCGCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTACACCTAAAGTTACAAAGTCATTAAGTGAAGGCAGTCAGGAAGGAAAGAGTACCCTGAGCCACGAGGTCTGTTATAAAGCATGGGGTGGACCAGAGAATGAATGGGCATGGGC------CCGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACATTGAAGCTTGGGACCTGCAACTGGTGTGGAGGTGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTGTGTTAACTGCTTTTTGGCAAAGTCTTG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102452970 753 - 162156779 gtgtattttatgtgtggtgcaagacag------ttcttccagtgtggcccagggaagccagaagATTGGATACCGCtcctttaatttttatggattaaCAAGGTGTTAATTCCTGTATCAGTTTCACTGATATTTCTTCTGCTCAATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATGTATGggttctttcatttccatgtccCAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAATTGTAAATTAAATGGATATTTAATACATTGAT-AAGGTCCTCAAACCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATTTGATGGGCTTGAAATTGAC--TGTTCTTCTTGTAAAAATGTTGGTTGGTTATTGCTGCCTTTAGCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTACAcctaaagttacaaagtcattaaGTGAAGGCAGTAAGGAAGGAAAGAGTACCCTGAG-CAGGAGGTCTGCTATAGCGCATGGGGTGGACCAGAGAATGAATGGGCATGAGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGTTTTCTACTGCGTTGTCCAGCAGAACACATTGAAGCTTGGGACCTGCAACTGGTGTGGAGGTGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTGTGTTAACTGCTTTTTGGCAAAGTCTTG
i papAnu2.chr7                  C 0 M 179
s chlSab2.chr29                  20317462 753 -  24206276 gtgtattttatgtgtggtgcaagacag------ttcttccagtgtggccaagggaagccagacgattggataccactCCTTTAATTTTTATGGATTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATATTTCTTCTGCTTGATGCAGGAACACTTGACTAGTTAGTTAAGGTAGATTGGTCCATACATTTATGGGTTCTTTCATTTCCATGTCCTAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAATTGTAAATTAAATGGATATTTAATACATTGAT-AAGGTCCTCAAACCTTTCAATCTTTCATTTTCATCCATGCTTACTGTTTGAATCTGATGGGCTTGAAATTGAC--TGTTCTTCTTGTAAAAATGTTGGTTGGTTATTGCTGCCTTTTTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCAGCAAAAAGTACAAAGTCATTAAGTGAAGGCAGTAAGGAAGGAAAGAGTACCCTGAG-CAGGAGGTCTGTTACAGCGCATGGGGTGGACCAGAGAATGAATGGGCATGAGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACATTGAAGCTTGGGACCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTGTGTTAACTGCTTTTTGGCAAAGTCTTG
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 114053583 709 - 132174527 gtgtattttttatgtggccaaagacaa---ttctttttccagtgtggcccagggaagccagaagattggacacTGCTCCTTTAATT----------------------------------------------TTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTAGTTCATAAATTCATAGGTTCTTTCATTCCTATGTCATAGGCAAGTCTGAGCAGGATCTGGAAAGCTCATTCAAAGGC---------CAGTGAGCTTAATTTTAAATTAAATGGATATTTAATACATTGAGAAAGGTACTCAAGCTTTTCGATCTTTCTTTTTCATTCATGCTTGCTGTTTGAATCTGATGGGCTTGAAATTGAC--TGTTCTTTTTCTAAAAATGTT-TTTTGTTATTGCTACGTTTCTCAAGCTTGGGTTTCAGTGTGGATTCCTGCAGATAATTTTTGCACCTTAAAGTACAGAGTCATTAAGTGAAGGCAGTTAGAAAGGAAAGAGTACTCCTAGCCAGGAGGTCTGTTATGGGGTATCGAGTGAACCAGAAAACGAATGGGCATGGACACGAGGATGGAGTTGGTTCAGTCAGTGTAAGAAAGCCACCTGTGTGTCACCTTCCTACTGTGTTGTTCAGCAGAACACATTCTAGGTTGGGGCTTGCGACTGGTGTGGAGATTATTTGCATTTAGGAGGCTGATGTAGATTATTTTCCCTCTAAGTGTGTGTTAACTGCTCTTTGGCCAAGTCTTG
i calJac3.chr10                 I 1515 C 0

a score=713236.000000
s hg38.chr15_KI270850v1_alt        153473 435 +    430880 ACCCGAGACATACACAGCTTGA-----------TCTGTGAGGATTTTAACATCGAGATGGTTCTGTTATTTGAGTTAGGCATGGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTATTGTTAGTGAGGTTTTTGCGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTTG-----------------CATGTGTGAATGACACTTGATATTGTTGTTTATATTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATCAAATTATAGTGA-----------------------AGT--CGCTTGGTTCTGTTTCTCTGACTCTTAAGAGGATGAGATCACTTTATACACAAACTCAAGCTGTTTGGTAAAGGACCTACCATTCTGAGCATTCATAGCCTAGATGAAGTCCTGGTCCAATCACCAAGTTAAACTTTTAAAA-
s panTro4.chr15_GL392289_random    150450 435 -    187897 ACCCGAGACATACACAGCTTGA-----------TCTGTGAGGATTTTAACATCGAGATGGTTCTATTATTTGAGTTAGGCATGGCTAGGCTACCAAGGCATTGCTTTTCGGTCCAAACATTTGGTCATTTCAATTTATTGTTAGTGAGGTTTTTGCGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTTG-----------------CATGTGTGAATGACACTTGATATTGTTGTTTATATTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATCAAATTATAGTGA-----------------------AGT--CGCTTGGTTCTGTTTCTCTGACTCTTAAGAGGATGAGATCACTTTATACACAAACTCAAGCTGTTTGGTAAAGGACCTACCATTCTGAGCATTCATAGCCTAGATGAAGTCCTGGTCCAATCACCAAGTTAAACTTTTAAAA-
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79995811 433 +  99152023 ATCCGAGACATACACAGCTTGA-----------TCTGTGAGGATTTTAACATCGAGATGGTTCTGTTATTTGAGTTAGGCATGGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTATTATTAGTGAGGTTTTTGTGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTTG-----------------CATGTATGAATGACACTTTATATTGTTGTTTATATTGCTGGTTAATATGTGCCTTCATTTACCTATTGTGAATAAGAAACTTCCTCAGATCAAATTACAGTGA-----------------------AGT--CGCTTGGTTCTGTTTCTCTGACTCTTAAGAGGATGAGATCACTTTATACTCAAACTCAAGCTGTTTGGTAAAGGACCTACCATTCTGAGCATTCATAGCCTAGATGAAGTCCTGGTCCAATCACCAAGTTAAACTTTT--AA-
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101784748 434 + 121039945 ATCCGAGACATACACAGCTTGA-----------TCTGTGAGGATTTTAACATCGAGATGGTTCTGTTATTTGAGTTAGGCATGGCTGGGCTACCAAGGCATTACTTTTCAGTCCAAACATTTGGTCATTTCAATGTATTGTTAGTGAGGCTTTTGTGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTTG-----------------CGTATATGAATGACACTTTATACTGTTGTTGATATTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATTAAATTATAGTGA-----------------------AGT--CACTTGGTTCTGTTTCTCTGACTCTTAAGAGCATGAGATCACTTTATACTCAAACTCAGGGTGTTTGGTAAAGGACCTACCATTCTGAGCGTTTAGAGCCTAGATGAGGTCCTGGTCCAATCACCAAGTGAAACTTTT-AAG-
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106478054 468 - 171882078 ATCTGAGACATACACAGCTTGATCTGTGGCAGATCTGTGAGGATTTTAATATCGAGAGGGTTCTGTTATTTGAGTTAGGCATAGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTATTGTTAATGAGGCTTTTGTGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTTG-----------------CATGTATGAATGACACTTTATACTGTCGTTTTTATTGCTGGTTAGTATGTGTCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATCAAATTATAGAAACAGAACCAAGTGATTATAGAAACAGT--CACCTGGTTCTGTTTCTCTGACTCTTAAGAGGATGAGATCACTTTATACTCTAATTCAGGATGTTTGGTAAAGGACCTACCATTGTGAGCATTTATAGCCTAGATGAAGTCCTGGCCCAATCTCCAAGTTCAACTTTT-AAG-
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  20318215 470 -  24206276 ATCTGAGACATACACAGCTTGATCTGTGGCAGGTCTGTGAGGATTTTAATATCGAGAGGGTTCTGTTATTTGAGTTAGGCATAGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTGTTGTTAGTGAGGCTTTTGTGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTTG-----------------CATGTATGAATGACACTTTATACTGTCCCTTATATTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTTAGATCAAATTATAGAAACAGAACCAAGTGACTATAGAAACAGTCACACTTGGTTCTGTTTCTCTGACTCTTAAGAGGATGAGATCACTTTATACTCTAATTCAGGGTGTTTGGTGAAGGACCTACCATTGTGAGCATTTATAGCCTAGATGAAGTCCTGGCCCAATCTCCAAGTTCAACTTTT-AAG-
i chlSab2.chr29                 C 0 C 0
s calJac3.chr10                 114054292 447 - 132174527 ATCTGAGACATACACAGCTTGATCTGTGGCAGACCTGTGAGGATTTTAATAATAAGAGAGTTCTGTTATTTGAGTTATGCATA-----GCTACCAAGGCATTGCTTTTCATTCCAAACATTTGGTCATTTCAATTTATTGTTAGTGAGGCTTTTGTGATTTGTTAGAACACACAGTTTGGGATTTTGTCTGtttttttttttttttttttttttCCATGTCTGAATGATACAT---------GTTTGTATTGCTGGTCAGTATATGCTTTCATTTACCTATTGTGAATAAGAAACTTCTTCAGATCAAATTATAGTGA-----------------------AGT--CACTTTGGTCTGTTTCTCTGACTCTTAAGAGGACGAAATCACTTTATACTCAAATTCAGGGTAGTTGGT-AAGGACCTACCATTCAGAGCATTTATAGCCTAGTTGAAGTCCT-GTCAAATCACCAAGTTAAACTTTT-AAGA
i calJac3.chr10                 C 0 N 0
e papAnu2.chr7                  102453723 179 - 162156779 M

a score=74044.000000
s hg38.chr15_KI270850v1_alt        153908 55 +    430880 AACATGCTGTTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTT
s panTro4.chr15_GL392289_random    150885 55 -    187897 AACATGCTGTTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79996244 55 +  99152023 AACATGCTGTTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101785182 55 + 121039945 AACATGCTATTCTTAACGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106478522 55 - 171882078 AACATGCTATTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  20318685 55 -  24206276 AACATGCTATTCTTAATGTTCAGGAAGTCAACCCTGGAAGCCTTCTCTAAATCGT
i chlSab2.chr29                 C 0 C 0
e papAnu2.chr7                  102453723 179 - 162156779 M

a score=2004849.000000
s hg38.chr15_KI270850v1_alt        153963 1148 +    430880 AATGAGAGTTTTATGAGAATTCATTTAGTGAAAATATC---TATCAGGGAATCCGGCTATTAACTTTG-AGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGGGAATTGAGGAAGAGGGTTCTAGTGGTCCCTTGCAATCCTCCCCTCACTTTCCAGGTTCCCTAGTAAGACCGGAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTATGTAAAAATGTAAGTGAACATACAATGGTTTTGCTTTGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTGTGACGGTGAAGCCTTTTTTGTCTTTATTTTTCAATCGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTCTGGGGTCAATCCCTGACCCCGCTTCCTTCCTAAATCTCTTAGTGTATAGCATACAGCTGGGCATATGGTAATCTCAGGCACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGTCTTTAGATGGCTTCTATATTTTTGATGACAACTTTTAATTTTATTCTCATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGCGAGTAAATCATACGATTTCTTTTCATTTTGTATTTATTTGTTCTGTTTACTTGTTATAATAAGCCACACTCTCACATGATAGATCCTCAAGGAAAATTTTAACCATATGTGCATGAATATA-TTGGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAGTACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGCGAGTTAATTTAG-TCAGGGCGATAGTATGCACGTATGAAACAAATTGTCCTGCCAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCACTGTGATTTACGTTATGTTGCCACTAGGTGGCACTATGTCATTGGCAAGAGTGCTGTGTTCTTTAGGACTCTGGGTGAAAGCTGATATATCATCTCCCTGAAGTGAGGGACT-----------------------TTGAAGATAA-AATTGATAAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTAGGCGACTA
s panTro4.chr15_GL392289_random    150940 1148 -    187897 AATGAGAGTTTTATGAGAATTCATTTAGTGAAAATATG---TATCAGGGAATCCAGCTATTAACTTTG-AGGAGGGTGATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGGGAATTGAGGAAGAGAGTTCTAGTGGTCCCTTGCAATCCTCCCCTCACTTTCCAGGTTCCCTAGTAAGACTGGAAGAAGTCCCTGAGCAAACAGCATTTTGTGAGTTTGAGGGACTGTGTAAAAATGTAAGTGAACATACAATGGTTTTGCTTTGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTGTGACAGTGAAGCCTTTTTTGTCTTTATTTTTCAATCGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTCTGGGGTCAATCCCTGACCCCGCTTCCTTCCTAAATCTCTTAGTGTATAGCATACAGCTGGGCATATGGTAATCTCAGGCAGGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTGGCTTATGTATTTTTGATGACAACTTTTAATTTTATTCTCATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGCGAGTAAATCATGCGATTTCTTTTCATTTTGTATTTATTTGTTCTGTTTACTTGTTGTAATAAGCCACACTCTCACATGATAGATCCTCAAGGAAAATTTTAACCATATGTGCATGAATATA-TTGGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAGTACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TCAGGGCGATAGTATGCACGTATGAAACAAATTGTCCTGCCAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCTTTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCACTGTGATTTACCTTACGTTGCCACTAGGTGGCACTATGTCATTGGCAAGAGTGCTGTTTTCTTCAGGACTCTGGGTGAAAGCTGATATATCATCTCCCTGAAGTGAGGGACT-----------------------TTGAAGATAA-AATTGATAAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTAGGCGACTA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79996299 1144 +  99152023 AATGAGATTTTTATGAGAATTCATTTAGTGAAAATATC---TATCAAGGAATCCAGCTATTAACTTTGAAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGGGAATTGAGGAAGAAAGTTCTAGAGGTCCCTTGCAATCCTCCCCTCACTTTCCACACTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTATGTAAAAATGTAAGTGAACATACAATGGTTTTGCTTTGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTGTGACAGTGAAGCCTTTTTTGTCTTTATTTTTCAATCGAAAGATCTTTCTTCCCCGCTTGAAAAGATTGAGTCTGGGGTCAATCCCTGACCCTGCTTCCTTCCTAAATCTCTTAGTGTATAGTATACAGCTGGGCATATAGTAATCTCGGGGATGGGTTTGTACTCACAGAGCTATGCTTGACACCTAGGACTTTAGATGGCTTATATATTTTTGATGACAACTTTTAATTTTATTCTCATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGTGAGTAAATCATGCGATTTCTTTTCA-TTTGTATTTATTTGTTCTGTTTACTTGTTATAATAAGCCACACTCTCACAT----GATTCTCAAAGAAAATTTTAAGCATATATGCATGAATATA-TTGGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TCAGGACGATAGTATGCACGTATGAAACAAATTGTCCCGCCAAACAGTACTGTAGCTTCTTA-TTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCACTGTGATTTACCTCATGTTGCCACTAGGTGGCACTATGTCATTGGCAAGAATGCTGTTTTCTTTAGGACTCTGGGTGAAAGCTGATATATCATCTCCCTAAAGTGAGGGACT-----------------------TTGAAGATAACAACTGATAAATGATTGCATCAAGGCTGGAAAAGGTAGGCTGTAGGCGACTA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101785237 1126 + 121039945 AATGAGATTTTTATGAGAATTCATTTAGTGAACATAAC---AATCAGGGAATCCAGCTATTAACTTTG-AGGAGGGTCGTGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTGCTCAGAGAAGGGGAATTGAGGAAGAGCGTTCTAGTGGTCCCTTGCAATCCTCCCCTTACTTTCCAGGCTCCCTAGTAAGACCGTAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTATGTAAAAATGTAAGTGAACATACAGTGGTTTTGCTTGGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTGTGACAGTGAAGC--TTTTTGTCTTTATTTTTCAATTGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTCTGGGGTCAATCCCTGACCCCGCTTCCTTCCTAAGTCTCTTAGTGTATAGCATACAGCTGGGCATATCATAATCTCGAGCACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTAGCTTATATATTTTCGATGACAACTTTTAATTTTATTCTCATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATGTGTCAGTAAATCATGAGATTTCTTATTATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGCCACACTCTCACATGATAGATTCTCAAGGAAAATTTTAACCATATATGCATGAATATA-TTGGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTGAATACTAAATGGCTGATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTCGAGAGTTAATTTAG-TCAGGGCGATAGTATGCACGTATGAAACAAATTGTCCTGCCAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTTCATTTCTGTAAAAGTGGTGTGGAGATCCTCCTACTGCCACTGTGATTTACCTTATGTTGCAACTAGGTGGCACTGTGTCATTGGCAAGAGTGCTGTTTTCTTTAGGAC--------------------TCATCTCCCTAAAGTGAGGGACT-----------------------TTGAAGATAA-AATTGATAAATGATTGAATCAAGGCTGGAAAAGGTAGGCGGTAGGCGACTA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106478577 1145 - 171882078 AATGAGATTTTTATGAGAATTCATTTAGTGAAAATAACAACAATCAGGGAATCCAGGTATTAACTCTG-AGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTTAGAGAAGGGGAATTGAGGAAGAGATTTCTAGTGG-CCCTTGCAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCGTTTTGTGAGTTTGAGGGACTAGGTAAAAACGTAAGTGAACATACAATGGTTTTCCTTTGATAAC--TTTTAAATATCCTTTTGGTTGTTGAAACTTCTGTGACAGTGAAAC--CTTTTGTCCTTATTTTTCAATTGGAAGATCTTTCTGCCCCACTTGAAAAGATTGAGTTTGGGATCAATCCCTGACCCCACTTCCTTCCTGAATCTCTTAGTGTATGGCATACAGCTGGGCATATGGTGAGCTCGGGGACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTGGCTCATGTATTTTTGATGACAACTTTTGATTTTATTCTCATTTATTCCATTTCTGTTTCAGTGTCTTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGTGAGCAAATCATGAGATTTCTTTTCATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGCCACACTCTCACGTGATAGATTCTCAAGGAAAATTTTAACCATATATGCATGAATACA-TTGATGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TCAGGGCGATAGTATGCACATATGAAACAAATTGTCCTGCAAAACAGTACTGTAGTTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCACTGTGATTTACCTTTTGTTGCAACTAGATGGCACTATGTCATTGGCAAGAGGGCTGTTTTCTTTA-GACTCTGGGTGAAAGCTGATATATCATCTCCCTAAAGTGAGGGACT-----------------------TTAAAGATAA-AATTGATGAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTAGGTGACTA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102453902 1142 - 162156779 AATGGGATTTTTATGAGAATTCA-TTAGTGAAAATAACA--CATCAGGGAATCCAGCTATTAACTCTG-AGGAGGGTCACG-CTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCT-CCTTCTTAGAGAAGGGGAATTGAGGAAGAGATTTCTCGTGG-CCCTTGCAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCGTTTTGTGAGTTTGAGGGACTAGGTAAAAACGTAAGTGAACATACAATGGTTTTGCTTTGATAAC--TTTTAAATATACTGTTGGTTGTTGAAACTTCTGTGACAGTGAAac--cttttgtctttatttttcaatcGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTTTGGGACCAATCCCTGACCCCACTTCCTTCCTGAATCTCTTAGTGTATGGCATACAGCTGGGCATATGGTAATCTCGGGGACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTCAGTGGCTTATATATTTTTGATgacaacttttcattttattctcatttattccATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGTGAGTAAAACAtgagatttcttttcattttgtatttatctgTTCTGTTTACTTGTTATAATAAGCCACACTCTCACGTGATAGATTCTCAAGGAAAATTTTAACCGTATATGCATGAATATATTTGATGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTACATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTGATTTAGTTCAGGGCGATAGTATACACATATGAAACAAATTGTCCTGCAAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCATTGTGATTTACCTTATGTTGCAACTAGATGGCACTATGTCATTGGCAAGAGTGCTGTTTTCTTTA-GACTCTGGGTGAAAGCTGATATATCATCTCCCTAAAGTGAGGGACT-----------------------TTGAAGATAA-AATTGATGAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTAGGCGACTA
i papAnu2.chr7                  M 179 C 0
s chlSab2.chr29                  20318740 1167 -  24206276 AATGGGATTTTTATGAGAATTCATTTAGTGAAAATAACAACAATCAGGGAATCCAGCTATTAACTCTG-AGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTTAGAGAAGGGGAATTAAGGAAGAGAGTTCTTGTGG-CCCTTGCAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGAC--GAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTAGGTAAAAACGTAAGTGAACCTACAATGGTTTTCCTTTGATAAC--TTTTAAATATCCTGTTGGTTGTTGAAACTTCTGTGACAGTGAAAC--CTTTTGTCCTTATTTTTCAATTGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTTTGGGATCAATCCCTGACCCCACTTCCTTCCTGAATCTCTTAGTGTATGGCATACAGCTGGGCATATGGTAATCTCAGGCACGGGAGTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTGGCTCATGTATTTTTGATGACAACTTTTGATTTTATTCTCATTTATTCCATTTCTGTTTCAGTGTCTTGGGTCATGAAACTTAATCCACAACAATCTCCCTTATATGTGAGCAAATCATGAGATTTCTTTTCATTTGGTATTTATCTGTTCTGTTTACTTGTTATAATAAGCCACACTCTCACGTGATAGATTCTCAAGGAAAATTTTAACCATGTATCCATGAATATA-TTTGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAACTGAAAACAAAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TCAGGGCGATAGTATGCACATATGAAGCAAATTGTCTTCCAAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCATTGTGATTTACCTTATGTTGCAACTAGATGGCACTATGTCATTGGCAAGAGTGCTGTTTTCTTTAGGACTCTGGGTGAAAGCTGATATATCATCTCCCTAAA-TGAGGGACTTTGAAGACAAaattaatgaatgattgaagacaa-aattgatgaatgattgaatcaaGGCTGGAAAAGGTAGGCTGTAGGCGACTA
i chlSab2.chr29                 C 0 I 5625

a score=1882544.000000
s hg38.chr15_KI270850v1_alt        155111 1085 +    430880 TTCTTCATTATTGTAAGAGTGAATTAA-TTGAATTTGGGTGGTGAAAAGTACCCGTTTGATGAGAAGCCAGCTTAGGGTTGTGGATGGTTAGAGCTGTGAGAGGCCAGTAGATGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAAAATATATTTGTAATAGGACTTGATTCCAGCCTTCAAGAATATGGATCATTTATTTGGACAAAACGTCCCCAGAATTAGTTGAAGACAAAAGGCAAA-TGGTCAGGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGGGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATAATGGGAGATAAGCCTGAAAAGGTGGATAAAGCTCAATTGTGAAGGAAGACAAAGGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTAATTTAAGGATGCTTTTCCTTTTATGCGTTTGTACATAAAAACATAAATGTACTTAACCATTCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTCATGTAACTTCTGCATAGCTGATTTTTACGTTAAATGTAACATGTAAAGAAATATATGTGTGTTTTTAGAAGACGTCTTATGTGCTCATTTTCTTTCTAGATTACTTGGAGATAATTTATGTTTACCAGTGGTTTTGCATGTGAACTGGGTACCTTGGGTTAt------------------ttattattattattattattatttagaaaacgggtctcgcactgtcatccttgttggagtgcagtggagcgatcatagctcg-------------------ctgcagccttgaagtcctgggctctaagcagtcctgcttcagcctcccgagtaactgggagtacaggcgcatgccaccatgccgagctaaatcctcccttttaaagtgtgtgattctttggtttttcgtgtgtatacagttttgtaattgccattgtctgaccagaacattttcatcaccccccaaaaaaagtgccatatccattagcagtcactcaccattccctgctcctctcaggctgtggcaaccacttgtatacttcctgtctttattgatatacctattctggaaagttca--t
s panTro4.chr15_GL392289_random    152088 1103 -    187897 TTCTTTATTATTGTAAGAGTGAATTAA-TTGAATTTGGGTGGTGAAAAGTACCCGTTTGATGAGAAGCCAGCTTAGGGTTGTGGATGGTTAGAGCTGTGAGAGGCCAGTAGATGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAAAATATATTTGTAATAGGACTTGATTCCAGCCTTCAAGAATATGGATCATTTATTTGGACAGAACGTCCCCAGAATTAGTTGAAGACAAAAGGCAAA-TGGTCAGGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGGGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATAATGGGAGATCAGCCTGAAAAGGTGGATAAAGCTCAATTGTGAAGGAAGACAAAGGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTATTTTAAGGATGCTTTTCCTTTTATGCATTTGTACATAAAAACATAAATGTACTTAACCATTCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTCATGTAACTTCTGCATAGCTGATTTTTACGTTAAATGTAACATGTAAAGAAATATATGTGTGTTTTTAGAAGACGTCTTATGTGCTCATTTTCTTTCTAGATTACTTGGAGATAATTTATGTTTACCAGTGGTTTTGCATGTGAACTGAGTACCTTGGGTTATttattattattattattattattattattattattattattTAGAAAACgggtctcacactgtcatccttgttggagtgcagtggagcgatcatagcttg-------------------ctgcagccttgaagtcctgggctctaagcagtcctgcttcagcctcccgagtaactgggagtacaggcgcatgccaccatgccGAGCTaaattctcccttttaaagtgtgtgattctttggtttttcgtgtgtatacagttttgtaattgccattgtctgaccagaacattttcatcaccccccaaaaaaagtgccatatccattagcagtcactcaccattccctgctcctctcagcctgtggcaaccacttgtacacttcctgtctttattgatatacctattctggaaagttca--t
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79997443 1081 +  99152023 TTCTTTATTATTGTAAGAGTGAATTAA-TTGAATTTGGGTGGTGAAAAGTGCCTGTTTGATGAGAAGCCAGCTTAGGGTTGTGGATGGTTAGAGCTATGAGAGGCCAGTAGATTCTGGGTTGCTATGCTCTGGAGAGGGTGAGAAAATATATTTGTAATAGGACTTGATTCTAGCCTTGAAGAATATGGATCATTTATTTGGACAAAACGTCCCCAGAATTAGTTGAAGACAAAAGGCAAA-TGGTCAGGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGGGGGGATGGTGAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATAATGTGAGATAAGCCTGAAAAGGTGGATAAAGCTCAATTGTGAAGGAAGACAAAGGTGTGAGGATTTTGTTTTGTGACCACCAAGGAGCCATTGATGGTGTTTATTTTAAGGATGCTTTTCCTTTTATGCATTTATACATAAATACATAAATGTACTTAACCATTCTGTATTAATAATAGTCATTTACCTTTCCCACATAAAATGTTCACGTAACTTCTGCATAGCTGATTTTTATGTTAAATGTAACATGTAAATAA--ATATGTGTGTTTTTAGAAGATGTCTTATGTGCTCATTTTCTTTCTAGATTACTTGGAGATAATTTATGTTTACCAGTGGTTTTGCATGTGAACTGAGTACCTTGGGTTAT------------------TTATTATTATTATTAtt-ttttttagaaaacgggtctcgcgctgtcatccttgttggagtgcggtggagcgatcatagctcg-------------------ctgcagccttgacgttctgggctc-aagcagtcctgcttcagcctcccgagtaactgggagtacaggcgcatgccaccatgccgagctaaattctcccttttaaagtgtgtgattctttggtttttcgtgtgtatatagttttgtaattgccattgtctgaccagaacattttcatcaccctccaaaaaaagtgccatatccattagcagtcactcaccattctctgctcctctcagcctgtggcaaccacttatatgcttcctgtctttattgatatacctattctggaaagttcg--t
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101786363 1084 + 121039945 TTGTTTATTATTCTAAGAGTGAATTAA-TTGAATTTGGGTGGTGAAAAGTGCCCGTTTGATGAGAAGCCAGCTTAGGGTTGTGGATGGTTAGAGCTATGAGAGGCCAGTAGATGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAAAATATATTTGTAATAGGACTTGATTCCAGCCTTGAAGAATATGGATCATTTAGTTGGACAAAACGTCCCCCAAATTAGTTGAAGACAAAAGGCAAA-TGGTCAGGAATGGGAGGCAGTAAACATAGTGTTGGATGAATAGTGGGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATAATGGGAGATAAGCCTGAAAAGATGGGTAAAGCTCAATTGTGAAGGAAGACAAAGATGTGAGGATTTTGTTTTGTGACCACCAAGGAGCCATTGATGGTGTTTATTTTAAGGATGCTTTTCCTTTTATGCATTTATACATAAATACATAAATGTACTTAACCATTCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTTATGTAACTTCTGCATAGCTGATTTTTATGTTAAATGTAACATGTAAAGAA--ATATGTGTGTTTTTAGAAGATGTCTTATGTGCACATTTTCTTTCTAGATTACTTGGAGATAATTTATGTTTACCAGTGGTTTTGCATGTGAACTGAGTACCTTGGGGttttt----------------tttttttttttttttttttttttGAGAAAACTggtctcactctgtcatccttgttggagtgcggtggagtgatcatagctcg-------------------ctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcctgagtaactgggagtacaggcgcatgccactatgccgagcTaaattctcccttttaaagtgtgtgattgtttggtttttcgtgtgtgtacagttttgcaattaccattgtctgaccagaacattttcatcagcccccaaaaaaggtgccatacccattagcagtcactcaccattccctgctcctctcagcctgtggcaaccacttacatacttcctgtctttattgatatacctattctggaaagttca--t
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106479722 1089 - 171882078 TTCTTTATTATGGTAAGAGTGAATTAG-TTGAATTTGGGTGATGAAAAGTGCCCGTTTGATGAGAAGCCAGCTTCGGGTTGTGGATGGTTAGGGCTATGAGAGGCCAGTAGTTGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAGAATATCTTTGTAATAGGACTTGATTCCGGCCTTGAAGAATATGGATCATTTAGTTGGACACAACGTCCCCAGAATTAGTTGAAGACAAAAGGTAAA-TGGTCAGGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGAGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATGATGGGAGATACGCCTGAAAAGATGGATGAAGCTCAATTGTGAAGGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTATTTTGAGGATGCTTTTCCTTTTATGCATTTATACATAAATACATAATTATAC-------TGCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTAATGTAACTTCTGCATAGCTGATTTTTATGTTGAATGTAACATGTCAAGAAATATATGTGCCTTTTTAGAAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTTATGTTTACCAGCGGGTTTGCATATGAACTGAGTACCTTGGGTTAt------------------------ttatttttattttttttgagagaacgggtcttgcgctgtcatcctcattggagtgcggtggagcgatcatagctcgctgcagtgatcatagctcgctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcccgagtaactgggagtacaggtgcatgccaccatgccgagctaaattttccctttagaagcgtgtgattctttggttttttgtgtgtatacagttttgcaatcaccattgtctgaccagaacattttcatca-cccccaaataaagtgccatacccattagcagtcactcgccattccctgatcctctcagcctgtgacaaccacttatatacttcttgtctttattgacatacctattccggaaagttca--t
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102455044 1083 - 162156779 TTCTTTATTATGGTAAGAGTGAATTAG-TTGAATTTGGGTGATGAAAAGTGCCCATTTGATGAGAAGCCAGCTTCGGGTTGTGGATGGTTAGGGCTATGAGAGGCCAGTAGTTGCTGGGTTGCTATGCTCTGGAGAgggtgagaaaatatatttgtaataggACTTGATTCCGGCCTTGAAGAATATGGATCATTTAGTTGGACACAACGTCCCCAGAATTAGTTGAAGACAAAAGGTAAATTGGTCAGGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGAGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATGATGGGAGATAAGCCTGAAAAGATGGATGAAGCTCAATTGTGAAGGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTATTTTGAGGATGCTTTTCCTTTTATGcatttatacataaatac--------ac-------TGCTGTATTAATAATAGTCATTTACCCTTCCaacataaaatgttaatgtaACTTCTGCATAGCtgatttttatgttaaatgtaaCATGTctagaaatatatgtgtgtttttagaAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTCATGTTTACCAGCGGGTTTGCATATGAACTGAGTAccttgagttat------------------------ttatttttattttttttgagagaacgGGTCTTGCGCTGTCATCCTCATTGGAGTGCGGTGGAgcgatcatagctcgctgcagtgatcatagctcactgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcccgagtaactgggagtacaggtgcatgccaccacgccgagctaaaTTTTCCCTTTAGAAACGTGTGATTCTTTGGTTTTTCGTGTGTATAC-GTTTTGCAATCACCATTGTCCGACCagtacattttcatca-cccccaaataAAGtgccatacccattagcagtcacttgcCATTCCCTGATCCTCTCAGCCTGTGACAACCACTTATATACTTCCTGTCTTTATTGACATACCTATTCTGGAAagttcatgt
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20325532 1088 -  24206276 TTCTTTATTATGGTAAGAGTGAATTAGTTTGAATTTGGGTGGTGAAAAGTGCCCGTTTGATGAGAAGCCAGCTTCGGGTTGTGGATGGTTAGGGCTATGAGAGGCCAGTAGTTGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAGAATATATTTGTAATAGGACTTGATTCCGGCCTTGAAGAATATGGATCATTTAGTTGGACAAAATGTCCCCAGAATTAGTTGAAGACAAAAGGTAAA-TGGTCAGGAGTGGGAGGCAGTGAACATAGTGTTGGGTGAATAGTGGGGGGATGGTCAGTGGAAA--CTGGCCCACCCAAGTTCGTGTCAGGTAATAATGGGAGATAAGCCTGAAAAGATGGATGAAGCTCAATTGTGAAGGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCTCTGAGGAGCCATTGATGGTGTTTATTTTGAGGATGCTTTTCCTTTTATGCATTTATACATAAATACATAAATATAC-------TGCTATATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTGATGTAACTTCTGCATAGCTGATTTTTATGTTAAATGTAACATGTCTAGAAATATATGTGTGTTTTTAGAAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTTATGTTTACCAGCGGGTTTGCATATGAACTGAGTACCTTGGGTTAt------------------------ttatttttaatttttttgagagaacgggtcttgcgctgtcatcctcattggagtgcggtggagcgatcatagctcgctgcagtgatcatagctcgctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcctgagtaactgggagtacaggtgcatgccaccacgccgagctaaattttccctttagaagcgtgtgattctttggtttttcatgtgtatacagttttgcaatcaccattgtctgaccagaacattttcatca-cccccaaataaagtgccatacccattagcagtcacttgccattccctgatccactcagcctgtgacaaccacttatatacttcctgtctttattgacatacctattctggaaagttca--t
i chlSab2.chr29                 I 5625 I 2647

a score=13040.000000
s hg38.chr15_KI270850v1_alt        156196 10 +    430880 atatatgtat
s panTro4.chr15_GL392289_random    153191 10 -    187897 atatatatat
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  79998524 10 +  99152023 atatatatat
i ponAbe2.chr15                 C 0 I 4374
s nomLeu3.chr6                  101787447 10 + 121039945 atatatatat
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106480811 10 - 171882078 atatatatat
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102456127 10 - 162156779 atatatatat
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20326620 2647 -  24206276 I

a score=5440.000000
s hg38.chr15_KI270850v1_alt        156206 22 +    430880 g--atatatatgatgtatatatga
s panTro4.chr15_GL392289_random    153201 24 -    187897 gatatatatatgatgtatatatga
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101787457 19 + 121039945 ---atatatat-atatatatat-a
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106480821 19 - 171882078 -----aaagttcatgtatatataa
i macFas5.chr7                  C 0 I 2606
s papAnu2.chr7                  102456137 19 - 162156779 -----aaagttcatgtatatataa
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20326620 2647 -  24206276 I
e ponAbe2.chr15                  79998534 4374 +  99152023 I

a score=3298.000000
s hg38.chr15_KI270850v1_alt        156228 18 +    430880 -tgtatatatg---atgtatgt
s panTro4.chr15_GL392289_random    153225 18 -    187897 -tgtatatatg---atgtatgt
i panTro4.chr15_GL392289_random C 0 I 97
s nomLeu3.chr6                  101787476 21 + 121039945 -tatatatatgtaaaagttcat
i nomLeu3.chr6                  C 0 C 0
s papAnu2.chr7                  102456156 19 - 162156779 aatcatacatg---atttttgt
i papAnu2.chr7                  C 0 C 0
e chlSab2.chr29                  20326620 2647 -  24206276 I
e macFas5.chr7                  106480840 2606 - 171882078 I
e ponAbe2.chr15                  79998534 4374 +  99152023 I

a score=100.000000
s hg38.chr15_KI270850v1_alt        156246 1 +    430880 g
s papAnu2.chr7                  102456175 1 - 162156779 g
i papAnu2.chr7                  C 0 I 2551
e chlSab2.chr29                  20326620 2647 -  24206276 I
e macFas5.chr7                  106480840 2606 - 171882078 I
e nomLeu3.chr6                  101787497 0 + 121039945 C
e ponAbe2.chr15                  79998534 4374 +  99152023 I
e panTro4.chr15_GL392289_random    153243 97 -    187897 I

a score=860.000000
s hg38.chr15_KI270850v1_alt        156247 28 +    430880 gtatatatatgatagatatcatatgata
s nomLeu3.chr6                  101787497 22 + 121039945 gtatatata------aaatcatgcaata
i nomLeu3.chr6                  C 0 I 3147
e chlSab2.chr29                  20326620 2647 -  24206276 I
e papAnu2.chr7                  102456176 2551 - 162156779 I
e macFas5.chr7                  106480840 2606 - 171882078 I
e ponAbe2.chr15                  79998534 4374 +  99152023 I
e panTro4.chr15_GL392289_random    153243 97 -    187897 I

a score=0.000000
s hg38.chr15_KI270850v1_alt        156275 228 +    430880 tcatatatatcatgatatatatatcatatgatatatatatcatatgatatcatatatatcatgatatatatatcatatgatatatatatcatatgatatatatcatatgatatcatatataatatatctatcatatctatcatatataatatatctaccatatgatatcatatatctcatgatatcatatatctcatgatatatatcatgatatatatctcatatatc
e chlSab2.chr29                  20326620 2647 -  24206276 I
e papAnu2.chr7                  102456176 2551 - 162156779 I
e macFas5.chr7                  106480840 2606 - 171882078 I
e nomLeu3.chr6                  101787519 3147 + 121039945 I
e ponAbe2.chr15                  79998534 4374 +  99152023 I
e panTro4.chr15_GL392289_random    153243  97 -    187897 I

a score=164943.000000
s hg38.chr15_KI270850v1_alt        156503 1838 +    430880 atatgatatatgatatataatttttgtaaatatatatgatatatcatatatatttgatatatatgatatatatgaaaaatatatatcatatatgatatataattttatatatttatatatagaaatttatatatataaagttatatataatatataattatatatatataaaagttcatgtatatataaaatcatgcaatacacggccttttgtgactggcttctttaatttagcatagtgttttcaagattcactcatgttagaacatgaatcagtaccttgttctttttattaatgaatgacagtccaatgactggttacatcacattttacttatccattcaccagttgatgggcagttgagttgtttccacttttggtctattatgcataatgctgctgtgaacagcaagttctggtgaagacatatgttttcatttctcttgggtatatacctaagagtagaattgcttgggtgtatgataactgtgtttaacattttgagaaattggaaaactgttttccacagtggctgcaccattttacattcctaccagcagtgtataaggacttcagtgtttccatgtgcttgccaacacatgttatctgactttctgatctatagccaccctaatgggcgtgaagtgatacctcattgtggttttgattgcatttcccaaatggcaaatgattttgagcatctttttatgtgcttattggccgtttttccgtatctttggagaaatgcctattcacatcctttgcctgtttttaaattgggttgtcttattgaactgtaagggttctttgcatattctgactacaggtcccttatcagatacatgacttgcaaaaattatctctcattctgtgggttgtcatttcacttccttgatgctatcctttcaagcaaaattttcagttttgataatgttctgttgttgatttttttttggcatcatatctaagaacaattctttgcctaacccagagtcacagagatttactcctatgttttcttctagaaattttataggtttagctcttacatttaggtatgtaatgtgagagttcatttttgtgtgttttgtaagggaagagtccaacttttttcttttgcatgtggatctctagatgttccagaagcatttgttgaaaagactgttctttccccaattgaattgtcttgggcatcgttgttgaaattgatcataaatgtgaggaattttttctggatgctgaatttgattcctttcatttaggttgtctttgatttctttcaacagtgttttgtagtgttcattgtataaacttggtactttcttgaaatttgttgcttatgattttattcattttgatgcgattgttaattttgttatcttaattgttcagtttttgattgttcattgattatatatagaaatactattgatttttgcataccggtctctgaaactgtagccttgtttcagaggtcaattatagactataatctggcttgtttgtttggcaacagctcttaagtggatgccttaggattttctatgtacaggatgaagtagttggagatcgttttcttcctttccaatctggatgccttttatttctttttcttgcctaatcgccctgagaagcatctctggtacaacattgaatggaagtggtgagcacaaacatccttgtcttgctactgatcttaaagagaaagcatccaagctttccccattaagtatgatgttgttaggtgtgggtttttcacaggtaccttttgttagatgaggacgttcccttctattcctactttgaccatttttatgatgaaaacgtgttggatttt
s panTro4.chr15_GL392289_random    153340 1824 -    187897 atatgatatatgatataaaatttttgcaaatatatgatatatatcatatat--ttgatatatatgatatatatgaaaaatatatatcacatatgatatataattttatatatttatatagataaatttatatatataa-------tata-tatataattatatatacataaaagttcatgtatatataaaatcatgcaatacatggccttttgtgactggctt----aatttagcatagtgttttcaagattcactcatgttagaacatggatcagtaccttgttctttttattaatgaatgacagtccaatgactggttacatcacattttacttatccattcaccagttgatgggcagttgagttgtttccacttttggtctattatgcataatgctgctgtgaacagcaagttctggtgaagacatatgttttcatttctcttgggtatatacctaagagtagaattgcttgggtgtatgataactgtgtttaacattttgagaaattggaaaactgttttccacagtggctgcaccattttacattcctaccagcagtgtataaggacttgagtgtttccatgtgcttgccaacacatgttatctgactttctgatctatagccaccctaatgggcgtgaagtgatacctcattgtggttttgattgcatttcccaaatggcaaatgattttgagcatctttttctgtgcttattggccgtttttctgtatctttggagaaatgcctattcacatcctttgcctgtttttaaattgggttgtcttattgaattgtaagggttctttgtatattctgactacaggtcccttatcagatacatgatttgcaaaaattatctctcattctgtgggttgtcatttcacttccttgatgctatcctttcaagcaaaattttcagttttgataatgttctgttgttgatttttttttggcatcatatctaagaacaattctttgcctaacccagagtcacagagatttactcctatgttttcttctagaaattttataggtttagctcttacatttaggtatgtaatgtgagagttcatttttgtgtattttgtaagggaagagtccaacttttttcttttgcatgtggatctctagatgttccagaagcatttgttgaaaagactattctttccccaattgaattgtcttgggcatcgttgttgaaattgatcataaatgtgagggattttttctggatgctgaatttgattcctttcatttaggttgtctttgatttctttcaacagtgttttgtagtgttcattgtataaacttggtactttcttgaaatttgttgcttatgattttattcattttgatgcgattgttaattttgttatcttaattgttcagtttttgattgttcattgattatatatagaaatactattgatttttgcatactggtctctgaaactgtagccttgtttcagaggtcaattatagactatgatctggcttgtttgtttggcaacagctcttaagtggatgccttaggattttctatgtacaggatgaagtagtttgagatcgttttcttcctttccaatctggatgccttttatttctttttcttgcctaatcgccctgagaagcatctctggtacaacattgaatagaagtggtgagcgcaaacatccttgtcttgctactgatcttaaagagaaagcatccaagctttcaccattaagtatgatgttgtcaggtgtgggtttttcacaggtaccttttgttagatgaggacgttgccttctattcctactttgaccatttttatgatgaaaacgtgttggatttt
i panTro4.chr15_GL392289_random I 97 C 0
e chlSab2.chr29                  20326620 2647 -  24206276 I
e papAnu2.chr7                  102456176 2551 - 162156779 I
e macFas5.chr7                  106480840 2606 - 171882078 I
e nomLeu3.chr6                  101787519 3147 + 121039945 I
e ponAbe2.chr15                  79998534 4374 +  99152023 I

a score=2451.000000
s hg38.chr15_KI270850v1_alt        158341 9 +    430880 gtcaggtga
s panTro4.chr15_GL392289_random    155164 9 -    187897 gtcaggtgA
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  106483446 9 - 171882078 gtcagagat
i macFas5.chr7                  I 2606 C 0
s papAnu2.chr7                  102458727 9 - 162156779 GTCAGAGAT
i papAnu2.chr7                  I 2551 C 0
e chlSab2.chr29                  20326620 2647 -  24206276 I
e nomLeu3.chr6                  101787519 3147 + 121039945 I
e ponAbe2.chr15                  79998534 4374 +  99152023 I

a score=225782.000000
s hg38.chr15_KI270850v1_alt        158350 182 +    430880 ttgaagatgctacactgctggcttagaacatggaggaaggagcctatgagccacagaatgcagctctagaagctggaaatagcaaaagaacactttctccacatagagactctagaaggaacacagccctgctggcactttgatttttaaacaagtgaaagtcattttggacttttgacttc
s panTro4.chr15_GL392289_random    155173 182 -    187897 TGGAAGATGCTacactgcgggcttagaacatggaggaaggagcccgtgagccacagaatgcagctctagaagctggaaatagcaaaagaacactttctccacatagagactctagaaggaacacagccctgctggcactttgatttttaaacaagtgaaagtcattttggacttttgacttc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80002908 182 +  99152023 ttgaagatgctgcactgctggcttagaacgtggaggaaggagcccatgagcctcagaatgcaactctagaagctggaaatagcaacagaacactttctccacgtagggactctagaaggagcacagccctgctggcacgttgatttttaaacaagtgaaagtcattttggacttctgacttc
i ponAbe2.chr15                 I 4374 C 0
s macFas5.chr7                  106483455 180 - 171882078 ttgaggatgctacactgctggcttagaacatggaagaaggaggccatgagccacggaatgcagctctagaagctggaaatggcaaaagaacactttctccacac--agactctagaaggaacacagccctgccagcgccttgaattttaaacaaatgaaagtcatttcggacttctgacttc
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102458736 180 - 162156779 TTGAGGATGCTACACTGCTGGCTTAGAACATGGAAGAAGGAGGCCATGAGCCACGGAATGcagctctagaagctggaaatggCAAAAGAACACTTTTTCCACAC--AGACtctagaaggaacacagccctgccagcGCCttgaattttaaacaaatgaaagtcATTTcggacttctgacttc
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20329267 182 -  24206276 ttgaggatgctacactgctggcttagaacatggaagaaggaggccatgagccacggaatgcagctctagaagctggaaatggcaaaagaacactttctccacacaaagactctagaaggaacacagccctgccagcgccttgaattttaaacaaatgaaagtcatttcggacttctgacttc
i chlSab2.chr29                 I 2647 C 0
e nomLeu3.chr6                  101787519 3147 + 121039945 I

a score=932133.000000
s hg38.chr15_KI270850v1_alt        158532 548 +    430880 cagaaatgataacatgataataaatttgtgttgtcttaagccactgagtttgtgataatttgttgttaacagcaataggaaactaataGAGTAGTAGTTTGGGGAAATTAGTGATAAAGGATAATTGGGTAGGAGAGGATAAATGTAGTTAGGTCAGTTTGAGTTCTCTGTGTGTTTCACTGTGTGTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTAATTGACCTTCAAAAGGCAGCTACTTTTTGATTTTAGTCCGTAACCTTTTATCAAATCAGTATTTTCCCCAAATAGGGTTGACAAGAAG-CATTCTAAATTATCTCCTAATAAGTTGTTTTGACTTCAGATATTGAAATTGCAGGCCCGTCTCCCACCCATCTCTGTTTTCTCACCTTTTTTGTACGTTTTATAATAAGCCTTACATTGA------------------------------AGTGTATGTGTCTGTCTGtctct------------ccctccttcccccaccccctccctctccttccccactc--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------AATTACAAAGAAGTTGT
s panTro4.chr15_GL392289_random    155355 554 -    187897 cagaaatgataatatgataataaatttgtgttgtcttaagccactgagtttgtgataatttgttgttaacagcaataggaaactaataGAGTAGTAGTTTGGGGAAATTAGTGATAAAGGATAATTGGGAAGGAGAGGATAAATGTAGTTAGGTCAGTTTGAGTTCTCTGTATGTTTCACTGTGTGTGTTTTGTAACATTTTAGTTTTTCCTAAAACCGAAGGATTAATTGACCTTCAAAAGGCAGCTACTTTTTGATTTTAGTCCGTAACCTTTTATCAAATCAATATTTTCCCCAAATAGGGTTGACAAGAAG-CATTCTAAATTATCTCCTAATAAGTTGTTTTGACTTCAGATATTGAAATTGCAGGCCCATCTCCCACCCATCTCTGTTTTCTCACCTTTTTTGTACGTTTTATAATAAGCCTTACATTGA------------------------------AGTGTATGTGTCTGTCTGtccct------------ccctccttcccccaccccctccctctccttccccactc--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAATTACAAAGAAGCTGT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80003090 537 +  99152023 cagaaatgataatatgataataaatttgtgttgttttaagccactgactttgtgataacttgttgttaacagcaataggaaa-taataGAGTAGTAGTTTGGGGAAATTAGTGATAAAGGATAATTGGGAAGGAGAGGAGAAATGCAGTTAGATCAGTTTGAGTTCTCTGTATTTTTCACTGTGTGTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTACTTTTTGATGTTAGTCTGTAACCTGTTATCAAATCAATATTTTCCCCAAATAGGGTTGACAAGAAG-CATTCTAAATAATCTCCTAATAAGTTGTTTTGACTTCGGATATTGAAATTGCAGGCCCATCTCCCACCCATCTCTGTTTTCTCACCTTTTTTGTATGTTTTATAATAAGTCTTACATTGA------------------------------AGTGTATGTGTCTGTCTGTCCCT------------CCCTCCTTCCCCCACCCCCGCCCTCTCCTTCCACACTC--tgtgtgtgtgtgtgtgtgtgtgtgt----------------AATTACAAAGAAGTTGT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101790666 547 + 121039945 cagaaatgataatatgataataaatttgtgttgtcttaagccactgagtttgtgatgatttgttgttaacagcaataggaaa-taatGGAGTAGTAGTTTGGGGAAATTAGTGATAAAGGATAATTGGGAAGGAGAGGATAAATGCAGTTAGATCAGTTTGCGTTCTCTGTATGTTTCACTGTGTGTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTACTTTTTGATATTAGTCTGTAACCTTTTATCAAATCAATATTTTCCCCAAATAGGGTTGACAAGAAG-CGTTCTAAATAATCTCCTAATAAGTTGTTTTGACTTCGGATATTGAAATTGCAGGCCCATCTCCCACCCATCTCTGTTTTCTCACCGTTTTTGTATGTTTTATAATAAGTCTTACATTGA------------------------------AGTGTATGTGTCTGTCTGtcact------------ccctccttcccccaccccctccctctccttccccactc--TGTAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------CATTACAAAGAAGTTGT
i nomLeu3.chr6                  I 3147 C 0
s macFas5.chr7                  106483635 572 - 171882078 cagaaatgataatatgataataaatttgtgttgtcttaagccactgagtttgtgataatttgttg-taacagcaatgtgaaactaataGAATGGTAGTTTGGGAAAATTAGTGATAAAGAATAATTGGCAAGGAGAGGATAAGTGCAGTTAGATCAGTTTGAGTTCTCTGTATGTTTTACTGTCAGTGTTTTGTAAGATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCGGCTCCTTTTTGATGTTAGTCTGTAACCTTTTATCAAAGCAATATTTTCCCCAAATAGGGTTGACAAGAAGACATTCTAAATTATCTCCTAATAAGTTGTTTTGACCTCGGATGTTGAAATTGCAGGCCCATCTCCCACCCATCTCTGTTTTCTCACTTTTTTGGTATGTTTAATAATAAGTCTTACATTGACTTATTATAATAAGTAAATTATCAGTGGTTAGTGTATGTGTCTGTCTGTCCTT------------CCCTCTTTCCCCCGACCCCGCCCTCTCCTTCCCCACTC--tgtgtgtgtgtgtgtctctgtgtgtgtgt------------AATTACAAAGAAGTTGT
i macFas5.chr7                  C 0 I 266
s papAnu2.chr7                  102458916 568 - 162156779 cagaaatGATAAtatgataatacatttgtgttgtcttaagccactgagtttgtgataatttgttg-taACAGCAATATGAAACTAATAGAATAGTAGTTTGGGAAAATTAGTGATAAAGGATAATTGGCAAGGAGAGGATAAGTGCAGTTAGATCAGTTTGAGTTCTCTGTATGTTTTACTGTCAGTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTCCTTTTTGATGTCAgtctgtaaccttttatcaaagcaatattttccccaaataggGTTGACAAGAAGACATTCTAAATTATCTCCTAATAAGCTGTTTTGACTTCGGATATTGAAATTGCAGGCCCATCTCCCACCCATCTCTGTTTTCTCGCTTTTTTGGTATGTTTAATAATAAGTCTTACATTGACTTATTATAATAAGTAAATTATCAGTGGTTAGTGTATG----TGTctgtcctt------------ccctctttcccccgACCCCGccctctccttccccactc--tgtgtgtgtgtgtgtctctgtgtgtgtgt------------aattacaAAGAAGTTGT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  20329449 586 -  24206276 cagaaatgataatgtggtaatacatttgtgttgtcttaagccactgagtttgtgataatttgttg-taacagcaatatgaaactaataGAATAGTAGTTTGGGAAAATTAGTGATAAAGGATAATTGGGAAGGAGAGGATAAGTGCAGTTAGATCAGTTTGAGTTCTCTGTATGTTTTACTGTCAGTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTCCTTTTTGATGTTAGTCTGTAACCTTTTATCAAAGCAATATTTTCCCCAAATAGGGTTGGCAAGAAGACATTCTAAATTATCTCCTAATAAGTTGTTTTGACCTCAGATGTTGAAATTGCAGGCCCATCTCCCACCCATCTCTGTTTTCTCACTTTTTTGGTATGTTTAATAATAAGTCTTACATTGACTTATTATAATAAGTAAATTATCAGTGGTTAGTGTATGTGTCTGTCTGTCCTTCCCTCTTCCCCCCCCTCTTTCCCCCGACCCCGCCTTCTCCTTCCCCACTCtgtgtgtgtgtgtgtgtctctgtgtgtgtgt------------AATTACAAAGAAGTTGT
i chlSab2.chr29                 C 0 C 0

a score=1967478.000000
s hg38.chr15_KI270850v1_alt        159080 1140 +    430880 AAAGGCCTTTTAAAGTAGTTATGATGTGATTTCCCCTCCTTTTAAAAAATAAAATATGTTAAGCATAAGTATTAACATCTTAGAGGGCAGGTAGGTGGAGACTTTGACTTTCTACTT----TATCTTTGAATCGCTTAAGTGTTTACAGTGAGCGTGTTATTTTTATGGTACAT--AGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGACTGTCCTGTCTTTTGAAAATAAACCCATCTTTTTGTGCTAATTAACACCGGAGGCCAGCTAAAGCTTTATAATAAAATATTGCATTCAAAATACCTATGAAAGTGGCTAGTTGAAGACTATAATTTGCTTTGAAACGTAGCTTGAAATGGAAATACATTTCTAATAATGAAAGGTGTTGCTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAACAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTCTAAAGCTGAGATTTGTTTTTTTAATATGTAGGTAGGATTGGCAAATAGCGTACAGAAATCTGGACATCCTTTGAAGATAATTGTTGGGGTGGAATGGGGGCATAGAGTACTGTTTTATTGTGTTCATTTTTATTAATGAAAC--TGAATTTAGACCAAGCAGTGATTTCAAAGTGGAAGATGGAACAGGATGTTTAGTAGGTTTTGTAGACTGTTTTTGTAAAAGGCTTTGGTGCAGAACCTTTCATAAAATGAAATA-TTTTTTCAGCATGTCTGTTATTTACTTTTAGAATTCAGAGCAAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAGATTTGACTCAGCTCTTTTATA------TTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTTGTCATTAAAAAAGAAAAAAAGACTACATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAGATTGCAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATATGTTCCACCtttct--tttttttttttttttttgttttgagatagagtctcactcttttgtccaggctgaagtgcagtggcacaatcacagcttagtgcagccttgacctcccaggctcaagtgatccttctacctcagcctc
s panTro4.chr15_GL392289_random    155909 1136 -    187897 AAAGGCCTTTTAAAGTAGTTATGATGTGATTTCCCCTCCTTTTAAAAAATAAAATATGTTAAGCATAAGTATTAACATCTTAGAGGGCAGGTAGGTGGAGACTTTGACTTTCTACTT----TATCTTTGAATCACTTAAATGTTTACAGTGAGTGTGTTATTTTTATGGTACAT--AGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGAATGTCCTGTCTTTTGAAAATAAACCCATCTTTTTGTGCTAATTAACACTGGAGGCCAGCCAAGGCTTTATAATAAAATATTGCATTCAGAATACCTATGAAAGTGGCTAGTTGAAGACTATAATTTGCTTTGAAACGTAGCTTGAAATGGAAATACATTTCTAATAATGAAAGGTGTTGCTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAACAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTCTAAAGCTGAGATTTGTTTTTTTAATATGTAGGTAGGATTGGCAAATAGCGTACAGAAATCTGGACATCCTCTGAAGATAATTGTTGGGGTGGAATGGGGGCATAGAGTACTGTTTTATTGTGTTCATTTTTGTTAATGAAAC--TGAATTTAGACCAAGCAGTGATTTCAAAGTGGAAGATGGAACAGGATGTTTAGTAGGTTTTGTATACTGTTTTTGTAAAAGGC-TTGGTGCAGAACCTTTCATAAAATGAAATA-TTTTTTCAGCATGTCTGTTATTTACTTTTAGAATTCAGAGCAAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAGATTTGACTCAGCTCTTTTATA------TTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTTGTCATTAAAAAAGAAAAAAAGACTACATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAGATTGCAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATATGTTACATCtttc-----tttttttttttttttgttttgagacagagtctcactcttttgtccaggctgaagtgcagtggcacaatcacagcttagtgcagccttgacctcccaggctccagtgatccttctacctcagcctc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80003627 1142 +  99152023 AAAGGCCTTTTAAAGTAGTTATGATGTGATTTCCCCTCCTTTTAAAAAATAAAATATGTTAAGCCTAAGTATTAACATCTTAGAGGGCAGGTAGGTGGAGACTTTGACTTTCTACTTTATCTATCTTTGAATCACTTAAATGTTTACAGTGAGGATGTTATTTGTATGATACAT--AGT-ATTTTTGATGAAAACATTTTGAAGACTGAAAAGAATGTCCTGTCTTTTGAAAATAAGCCCATC--TTTGTGCTAATTAACACTGGAGGCCAGCCAAGGCTTTATAATAAAATATTGCATTGAAAACACCTATGAAAGTAGCTAGTTGAAGAATATAATTTGCTTTGAAACGTAGCTTGAAATGGAAATATATTTCTAATAATGAAAGGTGTTGCTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAGACAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTCTAAAGCTAAGATTTGTTTTTTTAGGACGTAGGTAGGATTGGCAAATAGTGTACAGAAATCTGGACATCCTTTGAAGAT-ATTGTTGGGGTGGGATGGGGGCATAGAGTACTGTTTTATTGTGTTCATTTTTATTAAAGAAACTGTGAATTTAGACCAAGCGGTGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATGCTATTTTCGTAAAAGGCTTTGGTGCAGAATCTTTCATAAAATGAAATC-TTTTTTCAGCATGTCTGTTATTTACTTTTAGAATTCACAGCAAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAGATTTGACTCAGCTCTTTTATATTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAGAGTAGATTTGTCATTAAAAAAG-AAAAAAGACTACATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGCAGCCCAGGTTGCAACCAATGGTCTGACAGTTGTAATATGTTACATCtttc-------ttttttttgttttgttttgagacagagtctcactcttttgtccaggctgaagtgcagtggcacaatcacagcttagtgtagccttgacctcccaggctcaagtgatccttctacctcagcctc
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101791213 1134 + 121039945 AAAGGCCTTTTA--------ATGATGTGATTTCCCCTCCTTTTAAAAAATAAAATATGTTAAGCCTAAGTATTAACATCTTAGAGGGCAGGTAGATGGAGACTTTGACTTTCTACTTTATCTATCTTTGAATCTCTTAAATGTTTACAGTGAGCATGTGATTTGTATAATACAT--AGTAATTTTTGATGAAAACATTCTGAAGGCCGAAAAGAATGTCCTGTCTTTTGAAAATAAACCCATC--TTTGTGCTAATTAACACTGGAGGCCAGCCAAGGCTTTATAATAAAATATTGCATTCCAAACAACTATGAAAGTAGCTAGTTGAAGAATATAATTTGCTTTGAAACGTAGCTTGAAATGGAAATATATTTCTAATAATGAAAGGTGTTGCTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAGCAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTCTAAAGCTGAGATTTGTTTTTTTAAGACGTAGGTAGGATTGGCAAATAGTGTACAAAAATCTGGACATCCTTTGAAAGTAATTGTTGGGGTGGGATGGGGGCATAGAGTACTGTTTTATTCTGTTCATTTTTATTAAAGAAACTGTGAATTTAGACCAAGCAGTGATTTCAGAATGGAAGATGGAACAGGGTGTTTAATGGGTTTTGTATACTATTTTTGTAAAAGGCTTTGGTGCAGAATCTTTCATAAAATGAAATC-TTTTTTCAGCATATCTGTTACTTACTTTTAGAATTCACAGCAAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAGATTTGACTCAACTCTTTTATATTTTCCTTTTCTTTCTCAGTGATAAGGGAAGGTACTTTATAAAGTAGATTTTTCGTTAAAAAAGAAAAAAAGACTACATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAGGAAAAAAATTGCAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATATGTTACATCtttc----------tttttttgttgttttgaggcagagtctcactcttttgtccaggctgaagtgcagtggcacaatcacagcttagtgcagccttgacctcccaggctcaagtgatccttctacctcagcctc
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106484473 1141 - 171882078 AAAGGCCTTTTAAAGTAGTTATGATGTGGTTTCCCCTCCTTTTTAAAAATAAAATATGTTAAGCATAAGTAGTGACATCTTAGAGGGCAGGTAGGTGGAGAC--TGACTTTCTACTT----TATCTTTGAATCGTTTAAATGTTTACAGTGAGCATATTATTTGTATGATACATAGAGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGAATGTCCTGTCTTTTGAAAATAAACCCATT--TTGGTGCTAATTAACTCTGGAGGCCAGCCAAGGCTTTATAATAAAATATTGCATTCAAAACACCTATGAAAGTGGCTAGTTGAAGAATATAATTTGCTTTGAAATATATCTTGAAATGGAAGTATATTTCTAATAATGAAAGATGTTGTTTTAGTAATAAATGAAAATAAAATATCCCGTTATTATCCCTTCATAGAAAACAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTCTAAAGCTGAGA--TGTTTTTTTAAGACCTAGGTAGGATTCACAAATAGTGTACAGAAATCTGGACATCATTTGAAGATAATTGTTTGGGTGGGATGGAGGCATAGAGTACTGTTTTACTGTGTTCATTTTTATTAATGAAACTGTGAATTTAGACCAAGTAGTGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAATCTTTCATAAAATGAAATC-TTTTTTCAACATGCCTGTTATTTACTTTTAGAATTCGTGGAAAGGGTTCTTGTCTGAAGAGCTGCAAACCTTTATTGACTCCAGATTTGACTCAGCTCTTTTGTATTTTCCTTTTCTTTCTCACTGGTAAGGGAAGGTACTTTATAAAGTAGATTCTTCATTAA-----AAAAAAAGACTATATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGCAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATGTGTTACATCttttttgtttgtttgtttgtttttgttttgagacagagtgccactcttttgtccagactgaagtgcagtggcacagtcacagcttagtgtagccttgacctcccaggctcaagtgatccttctacttcagcctc
i macFas5.chr7                  I 266 I 20168
s papAnu2.chr7                  102459484 1145 - 162156779 AAAGGCCTTTTAAAGTAGTTATGATGTGGTTtcccctcctttttaaaaataaaatatgttaagcaTAAGTAGTGACATCTTAGAGGGCAGGTAGGTGGAGAC--Tgactttctactt----tatttttgaaTCGTTTAAATGTTTACAGTGAGCATATTATTTGCATGATACAT--AGTAATTTttgatgaaaacattttgaagGCCGAAAAGAATGTCCTGTCTTTTGAGAATAAACCTATC--TTTGTGCTAATTAACACTGGAGGTCAGCCAAggctttataataaaatattgcattCAAAACACCTATGAAAGTGTCTAGTTGAAGAATATAATTTGCTTTGAAACATATCTTGAAATGGGAGTATGTTTCTAACAATGAAAGGTGTTGTTTtagtaataaatgaaaataaaatatcccatTATTATCCcttcatagaaaacaaatacaaccCTAAATGACGTTTTAATTAACCAGTGATTTTCCTCTAAAGCTGAGA--TGtttttttAAGACCTAGGTAGGATTAGCAAATAGTGTACAGAAATCTGGACATCATTTGAAGATAATTGTTTGGGTGGGATGGAGGCATAAAGTACTGTTttattgtgttcatttttattaatgaaacTGTGAATTTAGACCAAGTAGTGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAatctttcataaaatgaaatcttttttttaacatGCCTGTTATTTACTTTTAGAATTCATGGAAAGGGTTCTTGTCTGAAGAGCTACAAACCTTTATTGACTCCAAATTTGACTCAgctcttttgtattttccttttctttctcactgaTAAGGGAAGGTACTTTATAAAGTAGATTCttcattaaaagagaaaaaaagactatatTTACCTGGTCAGAAGTTCTTTtgggtttaaagaaaaaaattgtagccCAGGTTGCAACAAATGGTCTGACAGTTATAATGTGttacatcttttttgtttgtttgtttgtttttgttttgagacagagtgtcactcttttgtccagactgaagtgcattggcacagtcacagcttagtgtagccttgacctcccaggctcaagtgatccttctacttcagcctc
i papAnu2.chr7                  C 0 I 4372
s chlSab2.chr29                  20330035 1135 -  24206276 AAAGGCCTTTTAAAGTAGTTATGATGTGATTTCCCCTCCTTTT-----AAAAAATATGTTAAGCATAAGTAGTAACATCTTAGAGGGCAGGTAGGTGGAGAC--TGACTTTCTACTT----TATCTTTGAATCGTTTAAATGTTTACAGTGAGCATATTATTTGTATAATACAT--AGTAATTTTTGATGAAAACATTTTGAAGGCCGAAAAGAATGTCGTGTCTTTTGAGAATAAACCTATC--TTGGTGCTAATTAACACTGGAGGTCAGCCAAGGCTTTATAATAATATATTGCATTCAAAACACCTATGAAAGTGGCTAGTTGAAGGATATAATTTGCTTTGAAATCTGTCTTGAAATGGAAGTATATTTCTAACAATGAAAGGTGTTGTTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAACAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTCTAAAGCTGAGA--TGTTTTTTTAAGACCTAGGTAGGATTGGCAAATAGTGTACCGAAATCTGGACATCATTTGAAGATAATTGTTTGGGTGGGATGGAGGCATAGAGTACTGTTTTATTGTGTTCATTTTTATTAATGAAACTGTGAATTTAGACCAAGTAATGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAATCTTTCATAAAATGAAATC-TTTTTTCAACATGCCTGTTATTTACTTTTAGAATTCGTGGAAAGGGTTCTTGTCTGAAGAGCTACAAACCTTTATTGACTCCAAATTAGACTCAGCTCTTTTGTGTTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTCTTCATTAAAAAAGAAAAAAAGACTATATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGTAGCCTAGGTTGCTACAAATGGTCTGACAGTTATAATGTGTTACATCttt----tttgtttgtttgtttttgttttgagacagagtgtcactcttttgtccagactgaagtgcagtggcacaatcacaacttagtgtagccttgacctcccaggctcaagtgatccttctacttcagcctc
i chlSab2.chr29                 C 0 N 0

a score=85099.000000
s hg38.chr15_KI270850v1_alt        160220 161 +    430880 acaagtagcactcaccatcatggtggctaa----ttttttttttttttttttttttggagagacggtgtctccctatgtttcccaggctggtctcgaactcctgggctaagtgatccttctgcctc-----cacaaagtgttgggattacaggtgtgagccaccacgcct
s panTro4.chr15_GL392289_random    157045 170 -    187897 acaagtagcactcaccatcatggtggctaatttttttttttttttttttttttttttgagagacggtgtctccctgtgtttcccaggctggtctcgaactcctgggctaagtgatccttctgcctccacttcacaaagtgttgggattacaggtgtgagccaccatgcct
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80004769 168 +  99152023 acaagtagcactcaccatcatggtggctaa--ttttttttttttttttttttttttggagagacggtgtctccctatgtttcccaggctggtctcgaactcctgggctaaatgatccttctgcctccacttcacaaagtgttgggattacaggtgtgagccaccatgcct
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792347 167 + 121039945 acaagtagcactcaccttcatggtggctaa--ttttttttttttttttttttttttggagagatgatgtctccctatgtttcccaggctggtctcgaactcctgggctaagtgatccttctgcctccacttcacaaagtgttgggattacaggtgtgagccaccatgcc-
i nomLeu3.chr6                  C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I

a score=13333.000000
s hg38.chr15_KI270850v1_alt        160381 27 +    430880 agccTCAA-----CAAAAATTGAACTATGTAC----------
s panTro4.chr15_GL392289_random    157215 27 -    187897 ggccTCAA-----CAAAAGTTGAACTATGTAC----------
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80004937 27 +  99152023 ggccTCAG-----CAAAAGTTGAACTATGTAC----------
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792514 27 + 121039945 ggccTCAA-----CAAAAGTTGAACTAGGTAC----------
i nomLeu3.chr6                  C 0 C 0
s canFam3.chr30                     27256 42 -  40214260 aacctcaaacatgcacaagttgaatagtgtggaggacctcca
i canFam3.chr30                 N 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I

a score=110677.000000
s hg38.chr15_KI270850v1_alt        160408 123 +    430880 TGTAGccaccctcaacagtgataaacttttggcaaat--cttatttcatttatactccactttggattattttgaagcagattccagacagatcacttcatctgtaaatatttctgtttgtatct
s panTro4.chr15_GL392289_random    157242 123 -    187897 TGTAGccaccctcaacaatgataaacttttggcaaat--cttatttcatttatactccactttggattattttgaagcagattccggacagatcacttcatctgtaaatatttctgtttgtatct
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80004964 123 +  99152023 TGTAGccagcctcaacaatgataaacttttggctaat--cttatttcatttttactccactttggattattttgaagcagattccagacagatcacttcatctctaaatatttctgtttgtatct
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792541 123 + 121039945 TGTAGccagcctcaacaatgataaacttttggctaat--cttatttcatttatactccactttggattcttttgacgcagattgcagacagatcacttcatctgtaaatatttctgtttgtatct
i nomLeu3.chr6                  C 0 C 0
s mm10.chr9                      55152561 122 + 124595110 TGcacccaggctcagctatgataaacttttggccaat--cttatttcatgtatatgcc-tattggattaatttgaagagtagtctagacatacaattttttctataaagatttcagtatgtgagt
i mm10.chr9                     N 0 C 0
s canFam3.chr30                     27298 125 -  40214260 tgtcttcagcctcatcaatggtcaatttttggccaatcaccaatgtcacctgtaccccacctcagattagtttgaagcaggttcctggtctgtcactccatctgtaaatatttcagtgagtatct
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I

a score=3163.000000
s hg38.chr15_KI270850v1_alt        160531 7 +    430880 cttgaaa-
s panTro4.chr15_GL392289_random    157365 7 -    187897 cttgaag-
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005087 7 +  99152023 cttgaag-
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792664 7 + 121039945 cttgaag-
i nomLeu3.chr6                  C 0 C 0
s calJac3.chrY                     182404 7 -   2853901 cctggAT-
i calJac3.chrY                  N 0 C 0
s mm10.chr9                      55152683 6 + 124595110 -ataaaa-
i mm10.chr9                     C 0 I 1
s canFam3.chr30                     27423 7 -  40214260 -ctaaaaa
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I

a score=171513.000000
s hg38.chr15_KI270850v1_alt        160538 118 +    430880 gtaaa-gactct-tttaaCCATGGATGAGTGTTTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATT-AAGGGAAAAATGGGGTTGGATTTGAAATG
s panTro4.chr15_GL392289_random    157372 118 -    187897 gtaaa-gactct-tttaaCCACGGATGAGTGTCTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATT-AAGGGAAAAATGGGGTTGGATTTCAAATG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005094 116 +  99152023 gtaaa-gactc---ttAACCATGGGTGAGTGTTTTGAACAAATCAACATGGCTTGTTCATGTCGATACCGTTTGCTCAGAGGGGAAAGATT-AAGGGAAAAATGGGATTGGATTTCAAATG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792671 118 + 121039945 gtaaa-gactat-tttaaCCATGGATGAGTGTTTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATC-AAGGGAAAAAAAGGGTTGGATTTCAAATG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54263216 118 + 170124641 gtaaa-gactct-tttaaacatGGATGAGTGTTTTGATAAAATCTACATGGCTTGTTCATGTCGATACCATTTGCTTTGAAGGGAAAGATC-AAGGGAAAAATGGAGTTGGATTTCAAATG
i rheMac3.chr7                  N 0 I 5
s calJac3.chrY                     182411 117 -   2853901 GTAAA-GACTCT-TCTAAACATGGATGAGTGTTTTGATAAAATCAACATGGCTTCTGCATGTCCATACCATTTGTTTAGAAGGGAAAGATC-AAGGGGAAAATGGGGTTGGATTTCAAAT-
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55152690  90 + 124595110 gtata-----ct-tttaaa-------aTATGTTTTGAT--AATGTATAGGGCCTGCTTTTATAGGTGTAATTTGCTCAGAAGGGAAAAAT----------------GTTGGAATTCAAATA
i mm10.chr9                     I 1 C 0
s canFam3.chr30                     27430 114 -  40214260 atagacgacactctttaaGCATAGGTAGGTGT-TTGATAAAATCTACATGGCTTGCTGGTGCCCATACCGCTTGCTTAGAGGGGAAAGAGCAAAGAAAAAAATGAGGTTGGATTT------
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I

a score=6801.000000
s hg38.chr15_KI270850v1_alt        160656 13 +    430880 CCAGGACCT-GTCT
s panTro4.chr15_GL392289_random    157490 13 -    187897 CCAGGACCT-GTCT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005210 13 +  99152023 CCAGGACCT-GTCT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792789 13 + 121039945 CCAGGACCT-GTCT
i nomLeu3.chr6                  C 0 C 0
s calJac3.chrY                     182528  1 -   2853901 -------------T
i calJac3.chrY                  C 0 I 5
s mm10.chr9                      55152780 14 + 124595110 CAAGTGCCTGGTCT
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     27544  7 -  40214260 ------CCT-GTCT
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I
e rheMac3.chr7                   54263334  5 + 170124641 I

a score=68879.000000
s hg38.chr15_KI270850v1_alt        160669 45 +    430880 ACTGGGTTTGTGATTTGTTATTCT--CTAAA--GTTGTAGCTCTTAAAA
s panTro4.chr15_GL392289_random    157503 45 -    187897 ACTGGGTTTGTGATTTGTTATTCT--CTAAA--GTTGTAGCTCTTAAAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005223 45 +  99152023 ACTGGGTTTGTGATTTGTTATTCT--CTAAA--GTTGTAGCTGTTAAAG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792802 41 + 121039945 ACTGGGTTTGTGATTTGTTATTCT--CTAAA--GTTGTAACTCTT----
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54263339 45 + 170124641 GTTTGATTTATGATTTGTTATTCT--CTAAA--GCTGTAACTCTTAAAA
i rheMac3.chr7                  I 5 I 20
s calJac3.chrY                     182534 45 -   2853901 GTTTGATTTATGATTTGTTGTTCT--CTGAA--GTTGTAGCTCttaaaa
i calJac3.chrY                  I 5 C 0
s mm10.chr9                      55152794 43 + 124595110 ACTAGGTTTGTGACCTGCTATTTTGCACAAA--GTTGTAGGTCAT----
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     27551 46 -  40214260 ATTGTGTTTGTGAATTGCTATTCT--CTAAAATGTTATAGCTCTTAAA-
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I

a score=4922.000000
s hg38.chr15_KI270850v1_alt        160714 10 +    430880 CAAAGAAAGG
s panTro4.chr15_GL392289_random    157548 10 -    187897 CAAAGAAAGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005268 10 +  99152023 CAAAGAAAGG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792843  9 + 121039945 -AAAGAAAGG
i nomLeu3.chr6                  C 0 C 0
s calJac3.chrY                     182579  9 -   2853901 -aaaaaaaaa
i calJac3.chrY                  C 0 I 313
s mm10.chr9                      55152837  6 + 124595110 TAGTGT----
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     27597  9 -  40214260 -AAAAAAAAT
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I
e rheMac3.chr7                   54263384 20 + 170124641 I

a score=19211.000000
s hg38.chr15_KI270850v1_alt        160724 20 +    430880 AGTGAGTTTGGCCTATTCAT
s panTro4.chr15_GL392289_random    157558 20 -    187897 AATGAGTTTGGCCTATTCAT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005278 20 +  99152023 AGTGAGTTTGGCCTGTTCAT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792852 20 + 121039945 AGTGAGTTTGGTCTATTCAT
i nomLeu3.chr6                  C 0 C 0
s calJac3.chrY                     182901 17 -   2853901 AATGAGTTTGACCTATT---
i calJac3.chrY                  I 313 C 0
s mm10.chr9                      55152843 20 + 124595110 AGTGGGCTTAAGTCGTTCTT
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     27606 20 -  40214260 ACTGAATTTTATCTGTTTTT
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I
e rheMac3.chr7                   54263384 20 + 170124641 I

a score=187564.000000
s hg38.chr15_KI270850v1_alt        160744 164 +    430880 TAACTTTTCCTCTTTAGACAGTT--caaatgtttattgagttcttctacaagccaggcactgccttct-TCTTGCTTACCAAGAAGCATTTTT-ATGCGGTTTCTCTAATGTTTGGGTGAATGGGACCTCATTAAGTTGTTTTTCACACAGGTGCGTGCTCGTTCCTG
s panTro4.chr15_GL392289_random    157578 163 -    187897 TAACTTTTCCTCTTTAGACAGTT--CAAATG-TTATTGAGTTCTTCTACAGGCCGAGCCCTGCCTTCT-TCATGCTTACCAAGCAGCATTTTT-ACGCGGTTTCTCTAATGTTTGGGTGAACGGTACCTCACTAAGTTGTTTTTCACACACATGCGTGCTCGTTCCTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005298 164 +  99152023 TAACTTTTCCTCTTTAGGCAGTT--CAAATGTTTATTGAGTTCTTCTACAAGCCAGGCCCTACCTTCT-TCATGCTTACCAAGAAGCATTTTT-ATGCGGTTTCTCTAATGTGTGGGTGAACGGTACCTCACTGAGTTGTTTTTCACACACGTGCATGCTAGTTCCTG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101792872 164 + 121039945 TAACTTTTCCTCTTCAGACAGTT--CAAATGTTTATTGAGTTCTTCTACAAGCCAGGCCCTGCCTTCT-TCATGCTTACCAAGAAGCATTTTT-ATGCGGTTTCTCTAATGTTTGGGTGAATGGTACCTCACTAAGTTGTTTTTCACACATGTGCGTGCTAGTTCCTG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54263404 150 + 170124641 TAACTTTTCCTCTTTAGACAGTT--CAATTATTTATTGAG---TTCTACATGCTAGGCTTTGTCTTAT-TTATACTTACCAAGGAACATCCTT-ATGCAGTTTCTCTAATGTTTGAGAA-----------ACTAAGTTTTTTTTTACACACGTGCATGCTAGTTCCTG
i rheMac3.chr7                  I 20 C 0
s calJac3.chrY                     182918 153 -   2853901 TAAC-TTTCCTCTTTAGACAGTT--CTAGTATTTATTGAGTTCTTCTACATGCCAGGCCCTATCTTCT-TTATGCTTACCCAGAAGCATCCTTAACGGAGTCTCTCTAATATTTGAGAA-----------ACTAGGTTGTCTTTTACACACATAGATGCTAGTTCCTG
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55152863 106 + 124595110 GAACTTTTCCTCTTTACATAGC-----AGTATTTATTAAGCTC-TCTGTACACCAGG--------TTT-CCAAGCTC-CCAAGCAACATGTGA-ATGGCAT---------------------------------------------CGTACTTGTGGACCAGCTTCTG
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     27626 158 -  40214260 TGTTTTTTGCTCtt------attcccagatatttattgagctcctccacgtgctaggccctgtcttTTCCCTTGCTCACCAGGAAGCATACTT-ACACAGTGTCTTTAACATTTGAGAAAACTGCGCCTCACCCG---TTTCCTTGCACTCCTGCTTGCCAGTTTCTG
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                  102460629 4372 - 162156779 I
e macFas5.chr7                  106485614 20168 - 171882078 I

a score=8831.000000
s hg38.chr15_KI270850v1_alt        160908 3 +    430880 AAG
s panTro4.chr15_GL392289_random    157741 3 -    187897 AAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005462 3 +  99152023 AAG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101793036 3 + 121039945 AAG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                   54263554 3 + 170124641 AAG
i rheMac3.chr7                  C 0 N 0
s macFas5.chr7                   65240125 3 + 171882078 AAC
i macFas5.chr7                  n 20168 C 0
s papAnu2.chr7                   59621430 3 + 162156779 AAC
i papAnu2.chr7                  T 532 C 0
s chlSab2.chr29                   3815439 3 +  24206276 AAG
i chlSab2.chr29                 N 0 C 0
s calJac3.chrY                     183071 3 -   2853901 AAG
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55152969 3 + 124595110 AAT
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     27784 3 -  40214260 AAT
i canFam3.chr30                 C 0 C 0

a score=905101.000000
s hg38.chr15_KI270850v1_alt        160911 376 +    430880 AGTCCTGTCCAGGTGCTCTGCCTGC-TTTTCCTTTCAGGCTTCTGTATCAGCTGC---TGTTTCCCTATAGAATGTG-CCCTGAACTCCACCCCTTAACCCTA-CCCAATTTGTCTTTAC-ATGTCTGACCATCCATGAAGGCTCTTCTGG---GTCATATTCAGTTCATGTTGA----TATTTCCCCTTCCTCCCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATGTTGTCTTATGCTATATT---CTGTAAGCC-----TGTTCAATTTCTTT----ATGGTGGCAGGGG-AAAATATTTTATAATTAT-GCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTTGGTCAATATTTGTTTCATTGAGTATATGACA-CTAGTCTAGCTATATTGTGCTT
s panTro4.chr15_GL392289_random    157744 376 -    187897 AGTCCTGTCCAGGTGCTCTGCCCGC-TTTTCCTTTCAGGCTTCTGTATCAGCTGC---TGTTTCCCTATAGAATGTG-CCCTGACCTCCACCCCTTAACCCTA-CCCAATTTGTCTTTAC-ATGTCTGACCATCCATGAAGGCTCTTCTGG---GTCGTATTCAGTTCATGTTGA----TATTTCCCCTTCCTCCCTTCTTTAGTCCTTACTATTTTTGCTTTGGTCATGTTTTCTTACGCTGTATT---CTGTAAGCC-----TGTTTAATTTTTTT----ATGGTGGCAGGGG-AAAATATTTTATAATTAT-GCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTGTGAGC-CTATTCTAGCTATATTGTGCTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005465 376 +  99152023 AGTCCTGTCCAGGTGCTCTGCCCGC-TTTTCCTTTCAGGCTTCTGTATCAGCTGC---TGTTTCCCTATAGAATGTG-CCCTGACCTCCATCCCTTAACCCTA-CCCAATTTGCCTTTAC-ATGTCTGACCATCCATGAAGGCTCTTCTGG---GTCATATTCAGTCCATGTTGC----TATTTCTCCTTCCTCCCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCCTGTTTTCTTATGCTGTATT---CTGTAAGCC-----TGTTTAATTTTTTT----ATGGTGGCAGGGG-AAAATATTTTATAATTAT-GCTTTGTGCTTTTAATCTTCCACTCAATAAATGCTTGGTAAATGTTTGTTTTATTGAGTATATGACA-CTATTCTAGCTATATTGTGCTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101793039 376 + 121039945 AGTCCTGTCCAGATGCTCTGCCCGC-TTTTCCTTTCAGGCTTCTGTATCAGCTGC---TGTTTCCCTACAGAATGTGTCCCTGACCTCCACCCCTTAACCCTA-CCCAATTTGTCTTTAC-ATGTCTGACCATCCATGAAGGCTCTTCTGG---GTCATATTCAGTTCATGTTGA----TATTTCCCCTTCTTCCCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATGTTTTCTTATGCTGTATT---CTGTAAGCG-----TGTTTAATTTTTTT----ATGGTGGCAGGGG-AAAATATTTTATAATTAT-GCTTTGTGGTTTTT-TCTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAGTATATGACA-CTATTCTAGCTATATTGTGCTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65240128 371 + 171882078 AGTCCTGTACAGGCGCTCTGCCCGC-TTTTCCTTTCAGGCTTCTGTATCAGCTAT---TTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCACTAACCCTA-CCCAATTTGTCTTTAC-ATGTCTGACCACC----AAGGCTCTTCTGG---GTCATATTTTGTTCATGCTGA----TATATCACCTTCCTACCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATG-----TTATGCTGTATT---CTGTAAGCC-----TTTTTACTTTTTTTA-AAATGGTGGCAGGGG-AGAATATTTTATAATTAT-ACTTTGTGCTTTTCATCTTCCACTGAATAAATGCTTGGTAAATATTTGTTTTATTAAGTGTGTGATT-CTATTGTCACTACATTGTGCTT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59621433 371 + 162156779 AGTCCTGTACAGGCGCTCTGCCCGC-TTTTCCTTTCAGGCTTCTGTATCAGCTAT---TTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCACTAACCCTA-CCCAATTTGTCTTTAC-ATGTCTGACCACC----AAGGCTCTTCTGG---GTCATATTTTGTTCATGCTGA----TATGTCACCTTCCTCCCCTCTTTAGTCCttactatttttgctttggtcatG-----TTATGCTGTATT---CTGTaagcc-----tttttacttttttta-aaatggtggcagggg-agaatattttataattat-actttGTGCTTTTCATCTTCCACTGAATaaatgcttggtaaatatttgttttattaagtGTGTGATC-CTATTGTCACTATATTGTGCTT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3815442 371 +  24206276 AGTCCTGTACAGGTGATCTGCCCGC-TTTTCCTTTCAGGCTTCTGTATCAGCTGT---TTTTCCCCTGTAGAATGTGCCCCTGACAGCCGCCCCCTAACCCTA-CCCAATTTGTCTTTAC-ATGTCTGACCACC----AAGGCTCTTCTGG---GTCATATTTTGTTCATGCTGA----TATGTCACCTTCCTCCCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATG-----TTATGCTGTATT---CTGTAAGCC-----TTTTTACTTTTTTTT-AAATGGTGGCAGGGG-AGAATATTTTATAATTAT-ACTTTGTGCTTTTCATCTTCCACTGAATAAATGCTTGGTAAATATTTGTTTTATTAAGTGTGTGATC-CTATTGTCACTATATTGTGCTT
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     183074 371 -   2853901 AGTCATACAGAGGTACTTTGCCAGC-TTTTCCTTTCAGACTTCTGTATCAGCTACAGGCTTCCCCTTGTAGAATGTGCCCCTGACCCCCACCCCTTAACCCTA-TCCAATTTGTCTTTAT-ATGCCTGATCATCCCTCAAGGCTCTTCTGG---GTCATATTCAGTTCATGCTGA----TATTTCCCCTTCTTCCCCTCTTTAGACATTACTATTTTTGGTTTGGTTATGTTTTCTTATGCAGTATT---CTGTAAGCC-----TTAACATTTTTTTTT---ATGGTGTCAGGGG-AGAA-----TATAATTAT-GCTTTGTGCTTTTTATCTTGCACTCAATAAATGCTTCGTAAATATTT-----ATTGAGTATATGACC-CTATTCTAGCTATATTGTATTT
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55152972 356 + 124595110 AGTCCTCTGAGGACA--CTGCTCAC--TTTCTTCCTAACCTTCTATATCAGCTGT---TCTTCCTCAGTGGGACGAGCTCCTGCCTCTCGCCTCT--GCCCTGTCCCAGCCTGCCTTTTCTATGGTTGATTGCCTTTTAAGACT-TTCTGT---GTCACGCGCAGTTCATAATAA----CATTTCCCCTTTTTCC---TTTTAGTTCTTGTGATTTCTGCTTT-------TTTTTTTCTTCCATGTTTACTCATAATTC-----TGATTATCTTTTCTCCAAGTTGTAATAGTGGCAGaatattatataattataaatttGTGCCTTATATTTTCT------------TTCAGTTCATACTTGTTCTATTGACTATATGGCCACTGTTGTAGTTATATTT-----
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     27787 331 -  40214260 AGTCTTCTCAAGATCCTGTGCCCCCCTTTTCCTTTGAGGCTTCTG---AAGCCAT---TTTTCCCACGTGGAATGTA--------------CCCCTTACCCAC-CCCGATCTGTCTCCAC-AT--CTGACCATCCCTCAAGGCTCTTCTAGGAAGTCCTATTCAGTCACTGGTGGTATTTATTTCCCCTTCCTCCCTTCTAGAATCTTTAC------TGCTTTGGTTATGTTTCCTAATGTTCTCTT---CTAATAGTTTTAGATGTTTGTCTCTTTTT------ATGACAGGGG-AGAA-----------GAG-TCTCTATGCTCTTCATCTTCCACTCAGTAAATGCTCAGTAAATATT----------------------CTATTTTAGCTATATTCTGTTT
i canFam3.chr30                 C 0 C 0

a score=-820.000000
s hg38.chr15_KI270850v1_alt        161287 1 +    430880 -G
s mm10.chr9                      55153328 1 + 124595110 -G
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     28118 1 -  40214260 C-
i canFam3.chr30                 C 0 C 0
e calJac3.chrY                     183445 0 -   2853901 C
e chlSab2.chr29                   3815813 0 +  24206276 C
e papAnu2.chr7                   59621804 0 + 162156779 C
e macFas5.chr7                   65240499 0 + 171882078 C
e nomLeu3.chr6                  101793415 0 + 121039945 C
e ponAbe2.chr15                  80005841 0 +  99152023 C
e panTro4.chr15_GL392289_random    158120 0 -    187897 C

a score=357.000000
s hg38.chr15_KI270850v1_alt        161288 13 +    430880 AACAAAAATCTTT
s mm10.chr9                      55153329 13 + 124595110 AAGGGAAGTTTTC
i mm10.chr9                     C 0 C 0
e calJac3.chrY                     183445  0 -   2853901 C
e canFam3.chr30                     28119  0 -  40214260 C
e chlSab2.chr29                   3815813  0 +  24206276 C
e papAnu2.chr7                   59621804  0 + 162156779 C
e macFas5.chr7                   65240499  0 + 171882078 C
e nomLeu3.chr6                  101793415  0 + 121039945 C
e ponAbe2.chr15                  80005841  0 +  99152023 C
e panTro4.chr15_GL392289_random    158120  0 -    187897 C

a score=0.000000
s hg38.chr15_KI270850v1_alt        161301 714 +    430880 TTTTTTTTTTCCAAATCAATAGGTCTTTTATTGCATCATTTAAATATCACAAGTAGGTCTTAAGTGTCATCTGGCATCTTCTTTCTGTAGCCAGGTAACTCTTAGATCTTATTCATCAGCCTGCTGAACAGTTCCTTTTTCAGAGACATAGATACCATCCAAAAATTTCCTGATATCCTTGTTTTTAACTGTTGTGGCTTGCTGAATCAAAGCCGCTGAATTTGAAACAAGCTCAATGTCATTTCCTTCAAGGATTAATTCATCTTTCTGGGCTTGAGATACTGAACAAGCAACACCTGGTCTCATCCGAACCCTGCGGATGTATTTTTCACCCAAGAAATTTCGGATTTCAACAAGAGACCCATTCTCCTGGATAACAACGTTGATGGGGAAGTGAGCATACACAGACCTCATCTTGTAACGGAAGCCCAGTGTAACACCCTTGATCATGTTCTGTACATGACTACAAATAGTCCGAACGGTAGCCAGTTCCTTTCTGTTACCCCACCATTTGTCAACCCGGAGCCTCTTTTTTTTCTTTCCAAGAAGGCTGAGTTCTACATTGATGTGATTGAAGTCCCTCCGCAGGGTTCCTCTGGGGCCCTTCACGATAACTGTGCGTCCCTTCAGAGTAATGTCGACATTTTCTGGAATGTCGACAGTCTGATTGCTGAGAATAGTCTTCATTCTCGCAGTAGACGCAGCAAAGAAAGC
e mm10.chr9                      55153342   0 + 124595110 C
e calJac3.chrY                     183445   0 -   2853901 C
e canFam3.chr30                     28119   0 -  40214260 C
e chlSab2.chr29                   3815813   0 +  24206276 C
e papAnu2.chr7                   59621804   0 + 162156779 C
e macFas5.chr7                   65240499   0 + 171882078 C
e nomLeu3.chr6                  101793415   0 + 121039945 C
e ponAbe2.chr15                  80005841   0 +  99152023 C
e panTro4.chr15_GL392289_random    158120   0 -    187897 C

a score=2800.000000
s hg38.chr15_KI270850v1_alt        162015 1 +    430880 G
s panTro4.chr15_GL392289_random    158120 1 -    187897 G
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005841 1 +  99152023 G
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101793415 1 + 121039945 G
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65240499 1 + 171882078 G
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59621804 1 + 162156779 G
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3815813 1 +  24206276 G
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     183445 1 -   2853901 G
i calJac3.chrY                  C 0 C 0
e mm10.chr9                      55153342 0 + 124595110 C
e canFam3.chr30                     28119 0 -  40214260 C

a score=42776.000000
s hg38.chr15_KI270850v1_alt        162016 14 +    430880 AACAAAAATCTTAA
s panTro4.chr15_GL392289_random    158121 14 -    187897 AACAAAAATCTTAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005842 14 +  99152023 AACAAAAAATTTAA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101793416 14 + 121039945 AACAAAAATCTTAA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65240500 14 + 171882078 AACAAAAATCTTAA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59621805 14 + 162156779 AACAAAAATCTTAA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3815814 14 +  24206276 AACAAAAATCTTAA
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     183446 14 -   2853901 AACAAAAATCTCAA
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     28119 14 -  40214260 AACAAAAATCTTAA
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55153342  0 + 124595110 C

a score=389129.000000
s hg38.chr15_KI270850v1_alt        162030 143 +    430880 CTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATCAAGAGCTTGTCATGGATAGTACA---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTG-A
s panTro4.chr15_GL392289_random    158135 143 -    187897 CTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATCAAGAGCTTGTCATGGATAGTACA---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTG-A
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005856 143 +  99152023 CTGCCTCATAAGTTAACTGCCAAGAATTTGTCAAAAGTGCAGAGATAACATCAAGAACTTGTCATGGATAGTACA---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCCTGTGAAAGAGAGTGTAAGAAGTG-A
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101793430 144 + 121039945 CTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATCAAGAACTTGTCATGGATAGTACA---------AAAAGGTCTGTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGAA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65240514 143 + 171882078 CTGCCTTGTAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATCAAGAACTCGTCATGGATAGTACA---------AAAAGGTCTCTAAGGGCTTGAT-AGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTG-A
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59621819 143 + 162156779 CTGCCTTATAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATCAAGAACTCGTCATGGATAGTACA---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTG-A
i papAnu2.chr7                  C 0 I 1111
s chlSab2.chr29                   3815828 143 +  24206276 CTGCCTTGTAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATCAAGAACTCGTCATGGATAGTACA---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTG-A
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     183460 139 -   2853901 CTGCCTTGTAACTTAACTGCTAAGAATTTGTCAAAAGTTTAGAGATAAGATCAAGAACTTTTCATGGGTAGCACA---------AAAAGGTCAATAAGGGCTTGAT-G--AGTCTGTAAATTGACTTAATATGAA--AGAGTGTAAGAAGTG-A
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55153342 117 + 124595110 CTGCCTTGAAAGATAGCTGGTAAGAATTTCTCAGA----CAG-----------------TATCATGGGCAGTAAAGAGATACTTAAAAGGTCATTGTAGATTTGATAGGACATCTGTAGGAAGACC-------------AGTGTCAGAATT---
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     28133 142 -  40214260 CTCTTGTGTAAGTTAACTGCCAAGAATTTGTCAAAAGTGTGGAGGTAACATCAAGA-CATATTTTAAATATTTCA---GTATTTAATAGGTCCCTG-------GATAGGAAATCTGTAATTTGACTTCATATGAAAGATAGTTTTAAAAAGG-A
i canFam3.chr30                 C 0 C 0

a score=397162.000000
s hg38.chr15_KI270850v1_alt        162173 377 +    430880 AAAAAAGCAAAACA-GAGTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCTA-----------TTTTTTTTTCCTGTTTTATAAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCCTTTTTA-TACTTCTTTTCTATGAAGCCATGTTATGAAAGAT----TGTTATACCAACTTAAGTATAGTT-----TTTCCATCTTCAGT-AACAGACGTGATTGC-------------CATCTAGTTACTGGTTCTGATCACCccaaaatgcaaagcagcttgttctaataacttatgcaggcctattgggagctagtatatgg----ctttgagtccttttgaagtattt--aacataatt----tggcaattccattactccttttatggactt
s panTro4.chr15_GL392289_random    158278 376 -    187897 AAAAAAGCAAAACA-GAGTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCTA------------TTTTTTTTCCTGTTTTATAAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCCTTTTTA-TACTTCTTTTCTATGAAGCCATGTTATGAAAGAT----TGTTATACCAACTTAAGTATAGTT-----TTTCCATCTTCAGT-AACAGACGTGATTGC-------------CATCTAGTTACTGGTTCTGATCACCccaaaatgcaaagcagcttgttctaataacttatgcaggcctattgggagctagtatatgg----ctttgagtccttttgaagtattt--aacataatt----tggcaattccattactccttttatggactt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80005999 374 +  99152023 AAAAAAGCAAAAC---AGTAGATGTTTTACTCTGTTTGCCGAGGGACTTGTGCTA------------TTTTTTTTCCTGTTTTATAAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCCTTTTTA-TATTTATTTTCTGTGAAGCCGTGTTATGAAAGAT----TCTTATACAAACTTAAGTATAGTT-----TTTCCAACTTCAGT-AACAGACCTGATTGC-------------CATCTAGTTACTGGTTCCTATCACAccaaaatgcaaagcagcttgttctaataacttgtgcaggcttattgggagctagtatatgg----ctttgagtccttttgaagtattt--aacataatt----tggcaattccattactccttttatggactt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101793574 373 + 121039945 AAAAAAGCAGAACA-GAGTAGATGTTTTA--CTGTTTGCCAAGGGATTTGTGCTA-------------TTTTTTTCCTGTTTTATAAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCCTTTTTA-TACTTCTTTTCTGTGAAGCCATGTTATGAAAGAT----TGTTATAGAAACTTAAGTATAGTT-----TTTCCATCTTCAGT-AACAGACCTGATTGC-------------CATCTAGTTACTGGTTCTGATCACAccaaaatgcaaagcagcttgttctaataacttgtgcaggcctattgggagctagtatatgg----ctttgagtccttttgaaatattt--aacataatt----tggcaattccattactccttttatggactt
i nomLeu3.chr6                  C 0 C 0
s calJac3.chrY                     183599 375 -   2853901 -AAAAACC----CA-GAGTAGATGTTTTACTTTATAGGCCAAGGAAATTGAGCTAA------TTGTAATTCTTTTTCTGTTTTATAAATTTGTCCTACTCTTAAA-AATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCATTTTTATTACTTCTGCTCTGTGAAGCCATGTTATGAGAGAT----TGTTACACAAACTTG-----AGTT-----TTTCCATCTTCAGTAAACTAACCTGATTGC-------------CATCTAATTagttgttacaatcacagcgaaaggcaaagcagcttgtttcagtaacctgtgcagccttattgggagctagtatataactttcttttagtccttttgaagtattt--aacataa------tggcaactccattattcattttatgaaatt
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55153459 372 + 124595110 --AAAACCACAACATGAGTGTCTGCTTTCC----TGGGCCAGGGAAAGTGGGCTGGTTTGGTTTATTTTTTCCATCCTGTTTTATAAATTTGTTGTACTCTCGAAT-ATGAAG-----------------------CTCACAGAGTCTTTAT---TTCTTGTTTTCTGTGGACTC-----ATGAAAGATTATCTGTTACATAAACGTACGCATTGCT-----TTTTCCATTTCAGTAAACAGGCCTGGTTGCCAGTCTTCACTAACATCTAGTT----GTTATAATCACAGTCCAAAGCAAAGCAGCTTATTTTAATAACCAGTATGGCCATTTTGGGAGCTAATATGTGG----CTTTTTTTTTTTTTTAGTCATTTTAAAAATACTTAAGGTAGCAGTTCCATTACTCCTTTTGGGGGGTT
i mm10.chr9                     C 0 I 1886
s canFam3.chr30                     28275 348 -  40214260 --AAAAACAAAACA-TAGATGTTCTTTGACTCTGTAGGCCAAGGGAATTGAGCTA------------AGTCTTTTCCTGTTATATAGATTTGTCCTAATCTTAAAATATGAAGGGAAAAAAATGCTACTTTCC-ACCTCAAAGAGTCTTTTTTATTACTTGCTTTGTGTGAACTCCTGATACG---GAG----TGTCATGCAAAC--AAATCTAATTGCCAGTTTCCACTAACACT-AA--------------------------CATGCAGTT----GTTATGCTCACACCTAGAAGCAAAGCagcatg-------------tgcagccttattgggagctagtatatggcattcttttagtccctttgaaatattt--aacataact----tggcaactccatttctccttatatggactt
i canFam3.chr30                 C 0 C 0
e chlSab2.chr29                   3815971   0 +  24206276 C
e papAnu2.chr7                   59621962 1111 + 162156779 I
e macFas5.chr7                   65240657   0 + 171882078 C

a score=153795.000000
s hg38.chr15_KI270850v1_alt        162550 163 +    430880 cttggcatctgtgaactcttggtagggaatcactgTTTTAGAATGAAAAATAtct----------------cccaggaagtaaattagccagtaaacaaatgaaacttcatttt--t-tatatgacttgtagagcctaaattatta--ctctttctgcataagt----ggctgctttctaggctgctt
s panTro4.chr15_GL392289_random    158654 163 -    187897 cttggcatctgtgaactcttggtagggaatcactgTTTTAGAATGAAAAATATCT----------------CCCAGGAAGTAAATTAGCCGGTAAACAAATGAAACTTCATTTT--T-TATATGACTTGTAGAGCCTAAATTATTA--CTCTTTCTGCATAAGT----GGCTGCTTTCTAGGCTGCTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80006373 151 +  99152023 cttggcatctgtgaactcttggtagggaatcactgTTTCAGAATGAAAAATGTCT----------------TCCAGGAAGTAAATTAGCCGGTAAACAAATGAAACTTCATTTT--T-TATATGACTTGTAGAGCATAAATTTTTA--CTCTTTCTGCATAAGT----------------GGCTGCTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101793947 163 + 121039945 cttggcatctgtgaactcttggtagggaatcactgTTTTAGAATGAAAAATGTCT----------------CCCAGGAAATAAATTAGCTGGTAAACAAATGAAACTTCGTTTT--T-TATATGACTTGTAGAGCATAAATTATTA--CTCTTTCTGCATAAGT----GGCTGCTTTCTAGGCTGCTT
i nomLeu3.chr6                  C 0 C 0
s calJac3.chrY                     183974 167 -   2853901 cttggcatctgggaactcttggtagggaatcactgTTTTAGAATGAAAAATCTCC----------------CCCAGGAAGTGAATTAGCT-GTAAACAAATGAAACTTTATTTT--TCTGTATGACTTGTAGAGCATAAATTATTG--CTCTTTCTGCATGAGTGGCTGGCTGCTTGCTAGGCTGTTA
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     28623 179 -  40214260 ctggaaatctggtaactcttgatagggaattaGTATTTCAGAGTGAAAATCTCCCCTCCCTCACCCCACCACCCACGGTGTAAATTAGCTGGCAAACA----AAACTTCATACTAAT-GTTATTGTTTGTGTAGCATAAACCATAAACTCTTTTTTGCATGAGT----GGCTATTTGCCAGGCTACTT
i canFam3.chr30                 C 0 I 438
e mm10.chr9                      55153831 1886 + 124595110 I
e chlSab2.chr29                   3815971   0 +  24206276 C
e papAnu2.chr7                   59621962 1111 + 162156779 I
e macFas5.chr7                   65240657   0 + 171882078 C

a score=9280.000000
s hg38.chr15_KI270850v1_alt        162713 14 +    430880 tTAGCGAGATTGTt
s panTro4.chr15_GL392289_random    158817 14 -    187897 TTAGAGAGATTGTt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80006524 14 +  99152023 TTAGCGAGATTGTt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101794110 14 + 121039945 TTAGCGAGATTGTt
i nomLeu3.chr6                  C 0 C 0
s calJac3.chrY                     184141 14 -   2853901 TGAGTGGGACTTTT
i calJac3.chrY                  C 0 I 384
e mm10.chr9                      55153831 1886 + 124595110 I
e canFam3.chr30                     28802 438 -  40214260 I
e chlSab2.chr29                   3815971  0 +  24206276 C
e papAnu2.chr7                   59621962 1111 + 162156779 I
e macFas5.chr7                   65240657  0 + 171882078 C

a score=232139.000000
s hg38.chr15_KI270850v1_alt        162727 437 +    430880 agaaacaaatgatcggtgctgtgaggaagaagcagcactcaggc-aaaaaagttttctcagcaagacaatttgcttctgcaagtatgctgcttgcattagtcatgattgcaagag--cacaccaaacggggtggagcaggggttcttatccctaacacagcccctgcctctgtgtcattccaacatgggctggggtaggactgcacaatcttagctgactcagttggatattgtgaatattttctctaataagaaagggagggggaatgtgagttacaggttgggactggtaggaagagttgcttacaaggcaggttactaagcaggtaactaagctggtaagtaggttcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacctttgaagaggaacttactgtacctaacaA
s panTro4.chr15_GL392289_random    158831 437 -    187897 agaaacaaatgatcggtgctgtgaggaagaagcagcactcaggc-aaaaaagttttctcagcaagacaatttgcttctgcaagtatgctgcttgcattagtcatgattgcaagag--cacaccaaacggggtggagcaggggttcttatccctaatgcactccctacctctgtgtcattccaacatgggctggggtaggactgcacaatcttagctgactcagctggatattgtgaatattttctctaataagaaagggagggggaatgtgagttacaggttgggactggtaggaagagttgcttacaaggcaggttactaagcaggtaactaagctggtaagtagggtcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacctttgaagaggaacttactgtacctaacaA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80006538 439 +  99152023 agaaacaagtgaatggtgctgtgaggaagaaccagcactcaggc-aaaaaagttttctcagcaagacaatttgcttctgcaagtatgctgcttgcattagtcatgattgcaagagcacacaccaaatggggtggagcaggggttcttatccctaatgcagtccctatatctgtgtcattccaacatgggctggggtaggactgcacaatctttgctggcccagttggctattgtgaatattttctctaataaggaagggagggagaatgtgagttacaggttgggactggtgggaagagttgtttacaaggcaggttactaagcaggtaactaagctggtaagtagggtcgagaaggtacagggaaattgttcttaggaacaaagaacagggaagttgaacaagttaaacctttgaagaggaacttactgtacctaacaA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  101794124 438 + 121039945 agaaacaaatgattggtgctgtgaggaagaaccagcactcaggcaaaaaaagttttctcagcaagacaatttgcttctgcagctatgctgcttgcattagtcatgattgcaagag--cacaccaaacggggtggagcaggggttcttatccctaatgcagtccctacctctgtgtcattccaacatgggctggggtaggactgcacaatctttgctaacccagttggctattgtgaatattttctctaataaggaagggagggggaatgtgagttacaggttgggactggtaggaagagttgtttacaaggcaggttactatgcaggtaactaagctggtaagtagggtcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacctttgaagaggaacttactgtacctaataA
i nomLeu3.chr6                  C 0 I 398
e mm10.chr9                      55153831 1886 + 124595110 I
e calJac3.chrY                     184155 384 -   2853901 I
e canFam3.chr30                     28802 438 -  40214260 I
e chlSab2.chr29                   3815971   0 +  24206276 C
e papAnu2.chr7                   59621962 1111 + 162156779 I
e macFas5.chr7                   65240657   0 + 171882078 C

a score=1565627.000000
s hg38.chr15_KI270850v1_alt        163164 5912 +    430880 [encoded data, 5943 characters]
s panTro4.chr15_GL392289_random    159268 5915 -    187897 [encoded data, 5943 characters]
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80006977 5912 +  99152023 [encoded data, 5943 characters]
i ponAbe2.chr15                 C 0 C 0
e mm10.chr9                      55153831 1886 + 124595110 I
e calJac3.chrY                     184155  384 -   2853901 I
e canFam3.chr30                     28802  438 -  40214260 I
e chlSab2.chr29                   3815971    0 +  24206276 C
e papAnu2.chr7                   59621962 1111 + 162156779 I
e macFas5.chr7                   65240657    0 + 171882078 C
e nomLeu3.chr6                  101794562  398 + 121039945 I

a score=255381.000000
s hg38.chr15_KI270850v1_alt        169076 534 +    430880 catttgttctttcaagctgtctaaaagtttgataggcccttcatctttcctttgttgtatgtcgaatgctcgagtaagattttgggttcggagtactgactcctgaatcccttttatt---atcatttccctaagttcctgcatatcctcttcagtgggctgtgttattattgtcccaccgggggtcttggttggggaatttttgatctgctgcatgaatgtgttttggccagga-gggtgttcatgttcccaggctaccatagcagctctacagatcatgcttctttcttcccctgagaaaaggatgcctaggatggacattaactcagcccaagtatatataactgtggtcctagaaattggttaatttgatctgctgttccacaggagttgtctaatagtgcggcttgaactctgtttttaggttttggacctcccagctggttaaaggagcatttacaaagcgaatac---ttcctcctcctagggacacctgtcttaaggggaagagaggtggagctaattctcccgaggtagagg
s panTro4.chr15_GL392289_random    165183 532 -    187897 catttgttctttcaacctgtctaaaagttcaataggcccttcatctttcctttgttgtatgtcgaatgctcgagtaagattttgggttcggagtactgactcccgaatcccttttatt---atcatttccctaagttcttgcatatcctcttcagtgggctgcgttattattgtcccaccaggggtcttggttggggaatttttgatccgctgcatgaa--tgttttggccagga-gggtgttcatgttcccaggctaccatagcagctctacagatcatgcttctttcttcccctgagaaaaggatgcctaggatggacattaactcagcccaactatatataactgtggtcctagaaattggttaattcgatctgctattccactggagttgtctaatagtgtggcttgaactctgtttttaggttttggacctccgagctggttaaaggagcatttacaaagggaatac---ctcctcctcgtagggacacctctcttcaggggaagagaggtggagctaattctcccgaggtagagg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80012889 532 +  99152023 catttgttctttcaacctgtctaaaagttccatagacccttcatctttcctttgttgtatgtcgaatgctcgagtaagattttgggtttggagtactgactcccgaatcccttttatt---atcatttccctaagttctcgcatatcctcttcagtgggctgcattattattgtcccactgggggtcttggttggggaa-ttttggtctgctgcatgaa--tgttttggccaggacagttgttcatgttcccaggctaccacagcagctctacggatcatgcttctttcttcccctgagaaaaggatgcctaggatggacattaactcagcccaagtatatgtaactgtggtcctggaaattggttaatttgatctgctattccacaggagtcgtctaatagtgtggcttgaactctgtttttaggttttggacctctgagctggttaaaggagcatttacaaagcgaatac---ctcctcttcctaggggcacctctcttaaggggaagagaggtggagctaattctcccgaggtAGAGG
i ponAbe2.chr15                 C 0 C 0
s papAnu2.chr7                  102465001 532 - 162156779 CACCTGTTCTTTCAATCTGTGTAAAAATTCCATAGGCCCTTCATCTTTCCTTTGTTGTATGTCAAATGCTCGAGTAAGATTTTGAGTTTGGAGTACTGACTCCCGAatcccatttttttaaatcattt-cctAAG-TCTTGCATATCCTC-TCGGTGAGCTGCATTACTGTTGTCCCACC-GAGGTCTTGGTTGGGGAATTTTTGATCTGCTGCATGAA--CTTTTTTGCCAGGA-GGGTGTTCATGTTCCCAGGCTACCATAGCAACTCTACGGATCATGCTTCTTTCTTCCCCTGAGAGGAGAATGCCTAGGATGGACATTAACTCAGCCCAAGTATA--TAACTGTGGTCCTAGAAATTGGTTAATTTGATCTGCTACTCCATATGAGTCGTCTAATAGTGTGGCTTGAGCTCTGTTTTTAGGTTTCAGACCTCTGAGCTGGTTAAAGGAGCATTTACAAAGCCAATGCTGGCTTCTCCTCCTAGGGATACCTCTCTTAAGGGGAAGAGAGATGGAGCTGATTCTTCCAAGTTAGAGG
i papAnu2.chr7                  I 4372 C 0
e mm10.chr9                      55153831 1886 + 124595110 I
e calJac3.chrY                     184155 384 -   2853901 I
e canFam3.chr30                     28802 438 -  40214260 I
e chlSab2.chr29                   3815971   0 +  24206276 C
e macFas5.chr7                   65240657   0 + 171882078 C
e nomLeu3.chr6                  101794562 398 + 121039945 I

a score=77193.000000
s hg38.chr15_KI270850v1_alt        169610 304 +    430880 ggaaggggaagttctgaatatcccttttacattgctctatctcacattgaaatcctttcagggaagagtacttagggtggtagtgagcaggctcttgggacgattcccaggaggcagggttatacagagggggaacAATGTGGGTAGGAAAAGGGTCTGGGACAACTGCCTCTGCTTGAGGGGGAGGGAGGTTAGGTTTAGGGGTATTGGACGGAGGAAGGTGGTGGAGGAGGTTCCATGTGTTGGTGAGCTGTCTAGGAACAGGGACCTTATCTTTCTCAGAGGAGTTAATTTCTGACTTGCT
s panTro4.chr15_GL392289_random    165715 298 -    187897 ggaaggggaagttctgaatatcccttttacattgctctatctcacattgaagtcctttcagggaagagtacttagggtggtagtgagcaggctgttgggacaattcccaagaggcagggttataaagagggggaacaatgtgggtaggagaagggtctgggacaactgcctctgcttgagggggagggagg------ttaggggtattggacgggggaaggtggtggaggaggttccatgtgttgGTGAGCTGTCTAGGAACAGGGATCTTATCTTTCTCAGAGGAGTTAATTTCTGACTTGCT
i panTro4.chr15_GL392289_random C 0 C 0
s papAnu2.chr7                  102465533 304 - 162156779 GGAAGGGGAAGTCCTGAATAGCCTTTTTACATTGCTCTATCTCATGTTGAAGTCCTTTCAGGGAAGGGTACTTAGGCTGGCAGTGAGCAGGCTCTTGGGACAATTCCCAAGAGGCAGGGTTATAAGTAGGGGGAATGATGTGGGTAGGAGAAGGGTCTATGACAACTGCCTCTACTTgagggggagggaggttagggttaggggtattggacgggggaaggtggtagaggaggtTCCATGTGTTGGTGAGCTGTCTAGGAATAGGGACCTTATCTTTCTCAGAGGAGTTAATTTCTGACTTGCT
i papAnu2.chr7                  C 0 I 1868
e mm10.chr9                      55153831 1886 + 124595110 I
e calJac3.chrY                     184155 384 -   2853901 I
e canFam3.chr30                     28802 438 -  40214260 I
e chlSab2.chr29                   3815971   0 +  24206276 C
e macFas5.chr7                   65240657   0 + 171882078 C
e nomLeu3.chr6                  101794562 398 + 121039945 I
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=12260.000000
s hg38.chr15_KI270850v1_alt        169914 135 +    430880 TTTCaggattgattcctgagtccaaatgaaacaacaatattttatcatttgctgctttttcttgtattgagtcctttcattctctttccaatattttagcataagccgtaggggactatcaggaggaatgttatt
s panTro4.chr15_GL392289_random    166013 135 -    187897 tttcaggattgattcctgagtccaaatgaaacaacaatattttatcatttgctgctttttcttgtatttagtcctttcattctctttccaatattttagcataagccctaggggactatcaggaggaatgttatt
i panTro4.chr15_GL392289_random C 0 I 1883
e mm10.chr9                      55153831 1886 + 124595110 I
e calJac3.chrY                     184155 384 -   2853901 I
e canFam3.chr30                     28802 438 -  40214260 I
e chlSab2.chr29                   3815971   0 +  24206276 C
e papAnu2.chr7                  102465837 1868 - 162156779 I
e macFas5.chr7                   65240657   0 + 171882078 C
e nomLeu3.chr6                  101794562 398 + 121039945 I
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=873.000000
s hg38.chr15_KI270850v1_alt        170049 3 +    430880 gtc
s panTro4.chr15_GL392289_random    168031 3 -    187897 GTC
i panTro4.chr15_GL392289_random I 1883 C 0
s nomLeu3.chr6                  101794960 3 + 121039945 GTC
i nomLeu3.chr6                  I 398 C 0
e mm10.chr9                      55153831 1886 + 124595110 I
e calJac3.chrY                     184155 384 -   2853901 I
e canFam3.chr30                     28802 438 -  40214260 I
e chlSab2.chr29                   3815971 0 +  24206276 C
e papAnu2.chr7                  102465837 1868 - 162156779 I
e macFas5.chr7                   65240657 0 + 171882078 C
e ponAbe2.chr15                  80013421 0 +  99152023 C

a score=2438.000000
s hg38.chr15_KI270850v1_alt        170052 3 +    430880 aac
s panTro4.chr15_GL392289_random    168034 3 -    187897 AGC
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101794963 3 + 121039945 AAC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106505782 3 - 171882078 AAC
i macFas5.chr7                  I 20168 C 0
s papAnu2.chr7                  102467705 3 - 162156779 AAT
i papAnu2.chr7                  I 1868 C 0
s calJac3.chrY                     184539 3 -   2853901 AAG
i calJac3.chrY                  I 384 C 0
s mm10.chr9                      55155717 3 + 124595110 AAG
i mm10.chr9                     I 1886 C 0
e canFam3.chr30                     28802 438 -  40214260 I
e chlSab2.chr29                   3815971 0 +  24206276 C
e ponAbe2.chr15                  80013421 0 +  99152023 C

a score=273915.000000
s hg38.chr15_KI270850v1_alt        170055 153 +    430880 ttgTACAAAGGAA---AGAAACAAACCTTGATTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACAGATTACCGTTCCAAATTGAATTTGTGGAGGAGCGTTGGGAAATATCAGAACTGTCATATTAAGCACCTAAGTGGTACTTT-T
s panTro4.chr15_GL392289_random    168037 153 -    187897 TTGTACAAAGGAA---AGAAACAAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGAACAGATTACCTTTCCAAATTGAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATATTAAGCACCTCAGTGGTACTTT-T
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101794966 153 + 121039945 TTGTACAAAGGAA---AGAAACCAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACAGATTACCTTTCCAAATTGAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATATTAAGCACCTAAGTGGTACTTT-T
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106505785 152 - 171882078 CTGTAGAAAGG-A---ATGAACAAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACGGATTACCTTTCCAAATTTAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATATGAAGCACCTAAGTGGTACTTT-T
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102467708 154 - 162156779 CTGtagaaaggaa---atgaacaaaccTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACGGATTACCTTTCCAAATTTAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATATGAAGCACCTAAGTGGTACTTTAT
i papAnu2.chr7                  C 0 C 0
s calJac3.chrY                     184542 153 -   2853901 TTGTACAAAGGAA---ATAAACAAACCTGGACTAAAGAGCCTAAGACTTTGTCTTTGGTTTGCCCTCCTGGGACAGATTACCTTTCCCAATTGAATTCCTGGAGAACCATTTGGAAGTATCAGAACTGTCATGTTAAGCACCTAAGTGGTACATT-C
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55155720 154 + 124595110 TTGTACAAAGGAAATTATGAACAAAA--TGACCACAGAGCCTAAGGATCTTTATTTAGCTTATTCTCCAGTGACAGCTTACCTTTCCAAATTGAATTCATGGAGAAGCTGTTGGAAATAACAGCGCTGATGTGTTAAGATCCTAAATGGTACTTT-C
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     29240 137 -  40214260 TTATACAAAGGAAATCATGAGCCAAC-TTGATTAAAGAGCCCAATACCTTTTCTTTGGTCTGCCCTTCTGGGACAGATTACCTTTCCAAATTGAACTCCTGGAGAATCATTTGGAAAT------------------AACACCTAAGTGGTACTTT-C
i canFam3.chr30                 I 438 C 0
e chlSab2.chr29                   3815971   0 +  24206276 C
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=295.000000
s hg38.chr15_KI270850v1_alt        170208 1 +    430880 A
s panTro4.chr15_GL392289_random    168190 1 -    187897 A
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101795119 1 + 121039945 A
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106505937 1 - 171882078 A
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102467862 1 - 162156779 T
i papAnu2.chr7                  C 0 C 0
s mm10.chr9                      55155874 1 + 124595110 A
i mm10.chr9                     C 0 I 7
e calJac3.chrY                     184695 0 -   2853901 C
e canFam3.chr30                     29377 0 -  40214260 C
e chlSab2.chr29                   3815971 0 +  24206276 C
e ponAbe2.chr15                  80013421 0 +  99152023 C

a score=583870.000000
s hg38.chr15_KI270850v1_alt        170209 722 +    430880 ATAGaggagttattcagaaattatattaggcagatagagagggtaaggaggcctcagtaaggctttcccttttaatagaaacaactccagaaacatttctttttcttttctttttatc--ttttttttggagacggagtctcgctctgtcgcccaggctgaagtgcagtggtgcgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaataccagcgcttagaaactgtgtccattcaacatggagattcccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccacgtgtgcaggacaacatggtgacctacatttgcatattaaaaggctagggtgggagggccacgtttttctcgggctgcatgaatgacctgcctggtcaaaccaataccctggtccctgtgcaaatcagacaccacctcctccagcctcccaatataaccgagtactgttctgccacacacggggctttttctctgttcggagcccccctttttctgtaccgcagggagcctttcttctttcttgcctattaaactttctgttccttaaaaccactcctgtgtgtccatatcgtttaactgacgtgacacaaaggaccccgatgtttctccagtcatcagagccatatcaCTTTG
s panTro4.chr15_GL392289_random    168191 721 -    187897 ATAGaggagttattcagaaattatactaggcagatagagagggtaaggaggcctcagtaaggctttcctttttaatagaaacaactccagaaacatttctttttcttttctttttatc--ttttttttggagacggagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaataccagtgcttagaaactgtgtccattcaacatggagattcccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccacgtgtgcaggacaacatggtgacctacatttgcatattaaaaggctagggtgggagggccacgtttttctcgggctacatgaatgacctgcctggtcaaaccaatgccctgggccctgtgcacatcagacaccacctcctccagcctcccaatataaccgagtactgttctgccacacacggggctttttctctgttcaga-cccccctttttctgtactgcagggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctgtgtgtccatgtcgtttaactggcgtgagacaaaggaccccgatgtttctcccgttttcagagccatatcaCTTTG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101795120 724 + 121039945 ATAGaggagttattcagaaattatattaggcagatagagagggtaaggagtcctcagtaaggctttcccttttaatagaaacaactccagaaacatttctttctcttttctttttatcttttttttttggagacggagtctcactctgttgcccaggctggagtgcagtggtgagatctcagcccactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaatgccagcgcttagaaactgtgtccattcaacatggagattcccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccacttgtgcgggacaacatggtgacctacatttgcatattaaaaggctagggtgggagggccacgtttttcttggggtacatgaatgacatgcctggtcaaaccaatgccctgggccctgtgcaaatcagacaccacctcctccagcctcccaatataaccgagtactattctgccacacacggggctttttctctgttcggagcccccctttttctgtacagcgaggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctgtgtgtccatgtcgtttaactggcgtgagacagaggatgccgatgtttctccagtcatcagagccatatcaCTTTC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106505938 712 - 171882078 GTAGaggagttactcagaaattatattaggcagatagagagggaaaggagtcctcagtaaggctttcccttttaatagaaacaactcctgaaacatttcttt-tcttttct---------ttttttttggagacggagtctcactctgtagaccaggctttagtgcagtgatgtgatctcggctcactgcaacctcctcctcccagttatagttgcatctcctgcctcagcctcctgagtagctgggactgcaggcTGCcgagctttaatatgcaaatgtcagcacttggaaactgagtccattcaacatgaaaattcccgccctcttcttctagtcaccgcctcaaggtgacacctccagaagaccc--tgtgtgcaggacaatatggtgacctacatttgcaaattaaaaggctagagtgggagggccacgtttttcttgggctacatgaatgacatgcctggtcaaaccgattccctgggcccaatgcaaatcagacaccacctcctccagcctcccaatataaccaagtacttttctgctgcacatggggctttttctctgttcggagccctgctttctctgtacaggggggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctctgcatccatgttgtttaactgatgtgagcccaaggaccctgatgtttctccagtcatcagagccatatcaATTTC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102467863 709 - 162156779 ATAGAGGAGTTATTCAGAAATTAtattaggcagatagagagggaAAGGAGTCCTCAGTAAGGCTTTCCCTTTTAATAGAAACAACTCCcgaaacatttcttt-tcttttc----------ttttttttggagacggagtctcactctgtcgaccaggctttagtgcagtgatgtgatctcggctcactgcaacctcctcctcccaggtacAGTtgcatctcctgcctcagcctcctgagtagctgggactgcaggctgccgagctttaatatgcaaatgtcaGCACTTGGAAACTGAGTCCATTCAACATGAAAATTCCTGCCCTCTTCTTCTAGTCACCGCCTCAAGGTGACACCTCCAGAAGACCC--TGTGTGCAGGACAATATGGTGACCTACATTTGCAAATTAAAAGGCTAGAGTGGGAGGGCCACGTTTTTCTTGGGCTTCATGAATGACCTGCCTGGTCAAACCGATTCCCTGGGCCCAatgcaaatcagacaccacctcctccagcctcccaataTAACCAAGTACTTTTCTGCTGCACACGGGG-TTTTTCTCTGTTCGGAGCCCCGCTTTCTCTGTACAGGGGGgagcctttcttctttcctgcctattaaactttctgctccttaaaaccactcctcTGCATCCATGTTGTTTAACTGGTGTGAGCCGAAGGACCCC-ATGTTTCTCCAGTCATCAGAGCCATATCAATTTC
i papAnu2.chr7                  C 0 C 0
e mm10.chr9                      55155875   7 + 124595110 I
e calJac3.chrY                     184695   0 -   2853901 C
e canFam3.chr30                     29377   0 -  40214260 C
e chlSab2.chr29                   3815971   0 +  24206276 C
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=11673.000000
s hg38.chr15_KI270850v1_alt        170931 7 +    430880 AGTCCAG
s panTro4.chr15_GL392289_random    168912 7 -    187897 AGTCCAG
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101795844 7 + 121039945 AGTCCAG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106506650 7 - 171882078 AGTCCAG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102468572 7 - 162156779 AGTCCCG
i papAnu2.chr7                  C 0 C 0
s calJac3.chrY                     184695 7 -   2853901 AGTCCAG
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     29377 7 -  40214260 AGGCCAG
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55155875 7 + 124595110 I
e chlSab2.chr29                   3815971 0 +  24206276 C
e ponAbe2.chr15                  80013421 0 +  99152023 C

a score=437767.000000
s hg38.chr15_KI270850v1_alt        170938 279 +    430880 AGGAATTATTGTTTTCATTTATCTGA---ATTTATAATATAGAGTCAAATTCCTAGTGGT--------TATCCTCTCTCATCCCCATTTTTATAGCCTTCCTTGAAAGGAACAGGTATATGAAGAGGAGAC--AGGTTTCCCTTTTGTGAATAGT-ATATCCCTTAGTA---TCTTGATTTTTTT-----TGGTGGGAGTC-GGGGG---AGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAGTTTAGGGTTAGGGAATTGAGTTGAATGGAGATAGTCACTGCC
s panTro4.chr15_GL392289_random    168919 279 -    187897 AGGAATTATT---TTCATTTATCTGACCAATTTATAATATAGAGTCAAATTCCTAGTGGT--------TATCCTCCCTCATCCCCATTTTTATAGCCTTCCTTGAAAGGAACAGGTATATGAAGAGGACAC--AGGTTTCCCTTTTGTGAATAGT-ATATCCCTTAGTA---TCTTGATTTTTTT-----TGGTGGGAGTC-GGGGG---AGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATACATGTCAGCTAGTTTAGGGTTAGGGAATTGAGTTGAATGGAGATAGTCACTGCC
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101795851 288 + 121039945 AGGAATTATTGTTTTCATTTATCTGACCAATTTATAATATAGAGTCAAATTCCTAGTGAT--------TATCTTCCCTCATCCCCATTTTTATACCCTTCCTTGAAAGGAACAGGTATATGAAGAGGAGAC--AGGTTTCCCTTTTGTGAATAGT-ATATCCCTTAGTA---TCTTGATTTTTTTGGGGGGGGTGGGGGTTGGGGGG---AGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAGTTTAGGGTTAGGGAATTGAGTTGAATGGAGATAGTCACTGCC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  106506657 284 - 171882078 AGGAATCGTT---TTCATTTATCTGACCGATTTATAATATAGGGTCAAATTCATAGTGGT----TGTCTATCCTCCCTCATCCCCATTTTTGTACCCTTCCTTGAAAGGAACATATATATGAAGAAGATAC--ATGTTTCCCTTTTGTGAATAGT-ATATCCCTTAGTA---TCTTGATTTTTTT-------CTTAGTGTG-GGGGGCACAGTTAAACTTACTTAGACTTGATAAAGGGCAGTATTTGATAAATGTCAGCTAGTTGAGGGGTAGGGAATTGAGTTGACTGGAGATAGTCACTGCC
i macFas5.chr7                  C 0 n 0
s papAnu2.chr7                  102468579 284 - 162156779 AGGAATCGTT---TTCATTTATCTGACCGATTTATAATATAGGGTCAAATTCATAGTGGT----TGTCTATCCTCCCTCATCCCCATTTTTGTACCCTTCCTTGAAAGGAACATATATATGAAGAAGATAC--ATGTTTCCCTTTTGTGAATAGT-ATATCCCTTagta---tcttgattttttt-------cttagtgtg-GGGGGCACCGTTAAACTTACTTAGACTTGATAAAGGGCAGTATTTGATAAATGTCAGCTAGTTGAGGGGTAGGGAATTGAGTTGACTGGGGATAGTCACTGCC
i papAnu2.chr7                  C 0 C 0
s calJac3.chrY                     184702 279 -   2853901 AAGGATCATTGTTTTCGTTTATCTGACCAATTTATAATATAGGGTCAAATTCTTAGTGGT----TATCTATCTTCTCT------CATTTTTATACCCTTCCTTGAAAGGAACAGATACCTGAAGAGGAGACTTTGCTTTCCCTTTTGCGAATAGT-ATATCCCTTAGTA---TCTTGATTTTTGT--------TGGTGGTG-GTGGT---GGTTAAACTTACTTCGACTTGGAAAAGGGTAGTGTTTGATAAATGTCAGCTAGTCGAGGGTTGGGGAATTGAGTTGAATAAAGATAGTCACTGTC
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55155882 268 + 124595110 AAGACTCATTGTTTTCATTTATTTGACCAGTTAATAATACAGGGTCAGATTCCATGTGGT----TATCTGTCCTTCTCTATCTCCATTTTAATGCACTTTCTTGAGAGAAATGGGATTATGAAGAGGCT-T--GGGTTTCCTTTTTATGAATGATGGTATACGTTAGTAAGTTTTTGGTGATGTC--------TGCAGGGT-GGGAG---TGTTAAACTTA----GACCTGGCAAGGAGTAGTGTTGGATAAGTGTCAGGTAATCGAGGG--AGGGAG----------TAGAGACAG--AATGCT
i mm10.chr9                     I 7 C 0
s canFam3.chr30                     29384 281 -  40214260 AGGAATCATTGTTTTCAATCATCTGACCAATT-----TATAGAGTCAAATTCCTAGTCCTTACCTATCTGTCCTCCCTTATTGCCATTTTTATACCCTTCCTTGAAAG-AACAGACATGTGAAAAAGAGACTCAGGTTTCCATTTTATGAATGGT-GTATCCCTGAGTA---ACTTGATGTTTTT-------GTTGTTGTT-TTGTT-TTTGTTAAACTTCCTTAGACCTGGGAAAGGATAGTATTAGATGGATGTCAGCTAGTGGAGAGGTGGGGACTTGAACTGAA-----ACAGTCACTGCC
i canFam3.chr30                 C 0 C 0
e chlSab2.chr29                   3815971   0 +  24206276 C
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=524064.000000
s hg38.chr15_KI270850v1_alt        171217 265 +    430880 AAATGTAAAGCATGACTGGAGAGCCAGAG-----------------TGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAG-----TGTTATGTGATCTCTTCTAGAAGATCGTGCTGAAAGATAATGCCAACTCAGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGTTTCAAATCCTCATCAGCAGGTTCGTTTTCTCTGCCTCAGTTTG-CTTACAATGATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTTAAGCATTTT
s panTro4.chr15_GL392289_random    169198 261 -    187897 AAATGTAAAGCATGACTGGAGAGCCACAG-----------------TGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAG-----TATTATGTGATCTCTTCTAGAAGATTGTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTG-CTTACAGTGATGTTCTCAGTAGCTGTAA-TTGCTGTCT----TTGAATACTTAAGCATTTT
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101796139 265 + 121039945 AAATGTAAAGCATGACTGGAGAGCCACAG-----------------TGATGAAGCCGGGGTCCCTTTCTCCAGATCCTTTGTAACAG-----TGTTATGTGATCTCTTCTAGAAGATCCTTCTGAAAGATAATGCCAACTCGGAACCTGGGAAACCATCCAGTGGGTTTCTGCGGCTTAGGTGGTTCAAATCCTGATCAGCACCTTTGTTTTCTCTGCCTCAGTTTG-CTTACAATGATGTTCTCAATAGCTGTAA-TTGCTGTCTGTCTTTGAATACATAAGCATTTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65240657 280 + 171882078 AAATGTAAAGCATGACTGGAGAGCCAGAGCATCAAGCCAGCTGGCTTTATCAAGCCAGCATCCCTCTCCCCAGATCCTTTGTAACAG-----TGTTATGTAATCTTTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTTGGAACCTAGGAAACCATCTAGTGGGTTTCTGCAGGTTCGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTTAGTTTG-CTTACAATGATGTTCTCAGTAGCTATAA-TTGCTGTCTGTCTTTGAATACTTAAGCA--TT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102468863 264 - 162156779 AAATGTAAAGCATGCCTGGAGAGCCAGAG-----------------TGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAG-----TGTTATGTGATCTCTTCTAGAAGATCATCCCAAAAGATAATGCCAGCTTGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCTTCAGCATATTGgttttctctgcctcagtttg-cTTACAATGATGTTCTCAGTAACTGTAA-TTGCTGTCTGTCTTTGAATACTTAAGCA-ttt
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3815971 265 +  24206276 AAATGTAAAGCATGACTGGAGAGCCAGAG-----------------TGATAAAGCCAGCATCCCTTTCCCCAGATCCTTTGTAACAG-----TGTTATGTAATCTTTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTTGGAACCTAGGAAACCATCTAGTGGGTTTCTGCAGGTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTTAGTTTG-CTTACAATGATGTTCTCAGTAGCTATAA-TTGCTGTCTGTCTTTGAATACTTAAGCATTTT
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     184981 231 -   2853901 AAATGTAAAGCATAACCGGAGAGCCAGAG-----------------TGATAAAGCAGGGGTCCCCAT-TCCAGATCCTTTGTAACAG-----TGTTATGTGATCTCTTCTAGAAGATCGTTCTGGAAGAAAATGCCAACTCGGAACCTA-------------------------------GTGGTTCAGATCGTCATTAGCACATTTGTTTTTTCTGCCTCAGTTTG-CTTATAATGATGTTCTC---AGCTGAAATTTGCTGCTTGTGTTTGACTACTGAAGCATTTT
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55156150 254 + 124595110 AACTATAAAACATTACAGGAGAGAAACA------------------CAACAAGGCTTG---CCCCTACCCCAAGGCTTTTGTAATAG-----TGGTCTCTAATAGCTTCTA-AAGATAATTATGAAAAACAATGGCTAATCAGAGCTACAGAAATCATCCAG-GGGAATTTGCAGCCTAGTTGATTCAGATCAATTTCA------TTATTTTATCTGCCTTAGTTCATTTTAGAAAAATATTCTGAGTATATGTAATTTGTTCTCTACC-TTAGCTAGTTAAGCAACTT
i mm10.chr9                     C 0 I 1
s canFam3.chr30                     29665 261 -  40214260 AAACGTAAAGCATTCCTGGAGAGCCAGGG------------------GATGAAGC-AGAGTCCCTGTTTCCAAGGCCATTGTAACAGTGCTCTGCTCTGTTCTCTGTTCTAAGGGATTATTCTGAAAGACAAAGTAGACTCAGAACCAAGGAAACTGTCCA-TTGGTTTCTGCAGATCAGGTGGTTTGGATCTTCTCCAGCATCTTTATTTTCTCTGCCTCAGTTTA-ATTAGAATGATGTTTTGATTAGCTGCGATTTGCTA-----CTCAAAACACTTAAGCATT--
i canFam3.chr30                 C 0 C 0
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=446972.000000
s hg38.chr15_KI270850v1_alt        171482 319 +    430880 ATTTT--AGCTCACAGGGGTATGTATGCA---TTTTTCTTTTACCAAGTGTTAGAACTTTGACTCTGCTTTTGTGGGCTCTGGGTTAGCAACTTGGTTGTTTAGTTGTAAAATGATTAGCAGGGAA------------------AACCgtg----------------------tgtgtgtgtgtgt---------gtgtgtgtgtgtg--------------------------------------tgtgtgtgtgtgtgtATTTTAAGTTTCT------------------------TTTGTTGTCAGAG----CACTTCGA-----ATT------TTATGTGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACAGTTATTGAACAGGAAAGTGTGAAGGTAACGCGTCCCATAACCAGCCTTCAGAAGAATTACAGCTGCTGTA
s panTro4.chr15_GL392289_random    169459 320 -    187897 TTTTTTTAGCTCACAGGGGTATGTGTGCA---TTTTTCTTTTACCAAGTGTTAGAACTTTGACTCTGCTTTTGTGGGCTCTGGTTTAGCAACTTGGTTGTTTAGTTATAAAATGATTAGTAGGGAA------------------AACCGTG-----------------------gtgtgtgtgtgt---------gtgtgtgtgtatg--------------------------------------tgtgtgtgtgtgtgtATTTTAAGTTTCT------------------------TTTGTTCTCAGAG----CACTTAGA-----ATT------TTATATGGAAATTCTATCAATTTACTTGATTCTCCACCCCACATTTCTTGAACAGCAAAGTATGAAGGTAATGCGTCCCATAACCAGCCTTCAGAAGAATTACAGCTGCTGTA
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101796404 329 + 121039945 TTTT---AGCTCACAGGGGTATGTATGCATTTTTTTTTTTTTACCAAGTGTTAGAACTTTGACTCTGCTTTTGTGGGCTCTGGGTTAGCAACTTGGTTGTTTAGTTGTAAAATGATTAGCAGGGAA------------------AACCgtgt--------------gtgtgtgtgtgtgtgtgtgt---------gtgtgtgtgtgtg--------------------------------------tgtgtgtgtgtgtgtATTTTAAGTTTCG------------------------TTTGTTGTCAGGG----CACTTAGA-----ATT------TTATATGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACATTTATTGAGCAGCAAAGTGTGAAGGTAAGGTGTCCCATAACCAGCCTTCAGAAGAATTACAGCTGCTGTG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65240937 318 + 171882078 TTTTT--AGATGACAGGGATATATGTGCA---TTTTTATTTTATCAAGAGATAGAATTTTTACTCTGCTTTTGTGGGCTCT-GGTTAGCTTATTGGTTGTTTAGTTGTAAAATGAT---TAGGGAA------------------AGCCgtg------------------------tgtgtgtgtgt---------gtgtgtgtgtgtg--------------------------------------tgtgtgtgtgtgtgtATTTTAAGTTTCT------------------------TTTGTTGTCAGAG----GACTTAGAATTTTATT------TTATATGGTAATTCTGACAATTTACTTTATTCTCCACCCCACATTTATTGAACAACAAAGTATGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATTACAGCTGCTGTA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102469127 295 - 162156779 ttttt--AGCTCACACAGGtatgtatgca---tttttattttaccaagtgTTAGAACTTTGACCCTCCTTTTGTGGGCTCTGGGTCAGCAACTTGGTTGTTTAGTTGTAAAATGGTTAGTAGGgaa------------------aaac-------------------------------------------------------gtgtg--------------------------------------tgtgtgtgtgtctgtattttaagttgat------------------------tttgttGTCAGAG----CACTTAGA-----ATT------TTATATGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACGTTTATTGAACAGCAAAGTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATCATAACTGCTTTA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3816236 308 +  24206276 TTTTT--AGATGACAGGGATATATGTGCA---TTTTTATTTTATCAAGAGATAGAATTTTTACTCTGCTTTTGTGGGCTCTGGGTTAGCTTATTGGTT-TTTAGTTGTAAAATGAT---TAGGGAA------------------AACt----------------------------------gtgt---------gtgtgtgtgtgtg--------------------------------------tgtgtgtgtgtgtgtATTTTAAGTTTCT------------------------TTTGTTGTCAGAG----GACTTAGAATTTTATT------TTATATGGTAATTCTGACAATTTACTTTATTCTCCACCCCACATTTATTGAACAACAAAGTATGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATTACAGCTGCTGTA
i chlSab2.chr29                 C 0 I 631
s calJac3.chrY                     185212 290 -   2853901 CTTTT-----TATTGTGGGTATATAAACA---TTTTTATTTTAACAAGTTTTAGAATTTTTCCTCTGCTTTAGTCGGCTCTACCTTAGCTACTTGGTTGTCTGTTTATAAAATGATAAGCAGGGAA--------------------CC-------------------------------------------------------------------------------------------------------GTGCGTGCACATTTTAAGTATCT------------------------TTTGTTGTCAGAG----CAGTTAGAATTTTATTAAGGCATTATGTGCTAATTCTGTCAATTTACTTCATTTTCCA-CCCACATTTATTGAACGGCAAAGTGTGAAAGTAATGTGTCCCATAACTGGCCTTCAGGAGAATTATAACTGCTGTA
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     29926 435 -  40214260 -TTTC--AGATCACA-GGGTATGTATGCA---TTTTTCTTTTACCAAGTGTT-GATTTTTCACTCTGCTTCTCTGGGCTCTGATCAAGTTACTTCGTTGTTTGCTTGCAAAATGATTAGCAGGGAGCAATTTCTTTCTTTGGGTAGCCTTTTTTTCCCGGATGTCAGCATTTAGGGGCACCTGGGTGgctcagcagggtgtctgcttgaagattccctccctctgcttccccccccccccaactcatgcatgggcccgtgcatgtccactgtctctaaaaataaataaatcttaaaaaTTAAATGTCAGAGACTTTTTTTAGACTCTTATTAGGGCACTGAACGGTAATTCTGTCAGT----ATCATTCTTAACCCCAAATTTCTGGAAC---ACAGTGTGAAAGTAATGTGTCCTATAACTGGTCTCTGAAAGAATTAGAACTGTTATG
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55156404   1 + 124595110 I
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=722.000000
s hg38.chr15_KI270850v1_alt        171801 3 +    430880 TCT-
s panTro4.chr15_GL392289_random    169779 3 -    187897 TCT-
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101796733 3 + 121039945 TCT-
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65241255 3 + 171882078 CAT-
i macFas5.chr7                  C 0 I 298
s papAnu2.chr7                  102469422 3 - 162156779 TCT-
i papAnu2.chr7                  C 0 C 0
s calJac3.chrY                     185502 3 -   2853901 TCT-
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     30361 3 -  40214260 -CTC
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55156404 1 + 124595110 I
e chlSab2.chr29                   3816544 631 +  24206276 I
e ponAbe2.chr15                  80013421 0 +  99152023 C

a score=16639.000000
s hg38.chr15_KI270850v1_alt        171804 10 +    430880 CTGAACTTTC
s panTro4.chr15_GL392289_random    169782 10 -    187897 CTGAACTTCC
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101796736 10 + 121039945 CTGAACTTTC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65241556 10 + 171882078 cTGAACTTTC
i macFas5.chr7                  I 298 I 3
s papAnu2.chr7                  102469425 10 - 162156779 CTGAACTTTC
i papAnu2.chr7                  C 0 I 3
s calJac3.chrY                     185505 10 -   2853901 CTGAACCATC
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     30364 10 -  40214260 CTGAACCTTC
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55156404  1 + 124595110 I
e chlSab2.chr29                   3816544 631 +  24206276 I
e ponAbe2.chr15                  80013421  0 +  99152023 C

a score=258950.000000
s hg38.chr15_KI270850v1_alt        171814 149 +    430880 AAGAAG---TTTGTGCATCAATTTTCAAAAAATTATGAAATCCCTGAAGATAGCTGTGTTCTA-CATTTGGAAAGATA-CAAAAACTG----------AACCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGCCACACACTGGTCTCAGTGGAT
s panTro4.chr15_GL392289_random    169792 152 -    187897 AAGAAGAAGTTTGTGCATCAATTTTCAAAAAATTATGAAATCCCTGAAGATAGCTGTGTTCTA-CATTTGGAAAGATA-CAAAAACTG----------AACCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGCCACACATTGGTCTCAGTGGAT
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  101796746 152 + 121039945 AAGAAGAAGTTTGTGCATCAATTTTCAAAAAATTATGAAATCTCTGAAGATGGCTGTGTTCTA-CATTTGGAAAGATA-CAAAAACTG----------AACCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAGAAAGAGCCACACACTGGTCTCAGTGGAT
i nomLeu3.chr6                  C 0 N 0
s macFas5.chr7                   65241569 147 + 171882078 ---AAGAAGTTTGTGCTTCAGTTTTCAAAACATTATGATATCA--AAAGATAGCTGTGCCGCA-CATTTGGAAAGATA-CAGAAACTG----------AACATACTGGCAGGCAGTTTTGCCTACTGGTGCTTGAGATAGAGCCACACCTTGGTCTCAGTGGAT
i macFas5.chr7                  I 3 C 0
s papAnu2.chr7                  102469438 148 - 162156779 ---AAGTAGTTTGTGCATCAGTTTTC-AAATAATACGAAATCCGTGAAGATAGCTGTGTCCTA-TATTTGGAAAGATA-CAAAAACTG----------AACATTCTAGCAGGCAGTTTTGCTTGCTGATGCTCGAGATAGAGCCACACATTGATCTCAGTGGat
i papAnu2.chr7                  I 3 C 0
s chlSab2.chr29                   3817175 147 +  24206276 ---AAGAAGTTTGTGCTTCAGTTTTCAAAACATTATGATATCA--AAAGATAGCTGTGCTGCA-CATTTGAAAAGATA-CAGAAACTG----------AGCATACTGGCAGGCAGTTTTGCCTACTGGTGCTTGAGATAGAGCCACACGTTGGTCTCCGTGGAT
i chlSab2.chr29                 I 631 C 0
s calJac3.chrY                     185515 162 -   2853901 AACAAGAAGTTGGTGCATCAATTTAAAAAAAATCACAAAATCCCTGAAGATAGCTGTGTCCTA-CATTTGGGAAGATA-CAAAAACTGACAAAAAAAAAAAAATCTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGCCACACAATGGTCTCAGTGGAT
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     30374 151 -  40214260 AACAAAAGTTGTATGTGTCCATCTTCAGAGAGTGATGAAGTCCTTGCAGATGACCACGTTCTATTATTTGGAAAGATAGTAGAAACAG----------ACCATTCTGGCAG--AGTTTTGC-TGGTGGTCCTTGATATGGAGCCACACATTGGGGTTAGTGGAC
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55156404   1 + 124595110 I
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=80826.000000
s hg38.chr15_KI270850v1_alt        171963 56 +    430880 TTGTGGAGAAAAGTAGGTACAGAAAGTTATTTCTAAATAAGACCAAAAAATCCTTT
s panTro4.chr15_GL392289_random    169944 55 -    187897 TTGTGGAGAAAAATAGGTACAGAAAGTTATTTCTAAATAAGACCAAAAA-TCCTTT
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                   65241716 56 + 171882078 TTGTGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACCAAAAAATTCTTT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  102469586 56 - 162156779 ttatggagaaaaatagatacagaaagtTACTTCTAAATAAGACCAAAAAATCCTTT
i papAnu2.chr7                  C 0 I 1975
s chlSab2.chr29                   3817322 56 +  24206276 TTGTGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACCAAAAAATCCTTT
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     185677 53 -   2853901 TTATGGAGAAAAATAGATATAGAAAGTTATTTCTAAATAAGAC--AAAAATCCTT-
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     30525 55 -  40214260 TCATGTAGAAAA-TAGACACAGAAAGTTATTTCTGAATAAGACTGATGGtttctct
i canFam3.chr30                 C 0 I 18
e mm10.chr9                      55156404  1 + 124595110 I
e ponAbe2.chr15                  80013421  0 +  99152023 C

a score=185751.000000
s hg38.chr15_KI270850v1_alt       172019 159 +    430880 TCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATAGAGACAGTTTTATGATGGGGATGGTAGTGATGATAAACTTGTTGGAAATTTGTCCACTTATGGTAACCTTTGTGGTAGCTGTCACAGACAACTTCAT
s panTro4.chr15_GL392289_random   169999 159 -    187897 TCTTAAGCAGTGACAGGTAAAGGGGTTGTCTTGGCTAATATTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTTGAAATTTGTCCACCTATAGTAAGCTTTGTGGTAGCTGTCACAGACAGCTTCAT
i panTro4.chr15_GL392289_random C 0 C 0
s macFas5.chr7                  65241772 158 + 171882078 TCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTGTATGGTGGGGATGGTAGTGGTGAT-AACCTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACTGTCACAGACAACTTCAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                  59623073 158 + 162156779 tcttaagcAGTGACAGGTAAAGAAGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTGTATGGTGGGGATGGTAGTGGTGAT-AACCTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACTGTCACAGACAACTTCAT
i papAnu2.chr7                  I 1111 C 0
s chlSab2.chr29                  3817378 159 +  24206276 TCTTAAACAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGTGGATGGTAGCGGTGACAAACTTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACTGTCACAGACAACTTCAT
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                    185730 155 -   2853901 ----AATCAGCGACAGATAAAGAGGTTGGCTTGGTTAGCCTTGTGTCATGTTCCCCTTGATTAAGACAGTTTTATGGTGGGGATGGTAGCAGTGGTGAACTTGCTTGAAATTTGTCCACTTACAGTAATCCTTATGGTAGCTGTCGCAGACAACTTCAT
i calJac3.chrY                  C 0 C 0
e mm10.chr9                     55156404   1 + 124595110 I
e canFam3.chr30                    30580  18 -  40214260 I
e ponAbe2.chr15                 80013421   0 +  99152023 C

a score=645329.000000
s hg38.chr15_KI270850v1_alt        172178 397 +    430880 CCTCACAGGCCCTAAAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTGGATAATTGTTCTGTGTTTTCATAACAAGTGAAAAAGAGCAGTGTTAGAAGTACTTAAACATTCCATGTAAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAACAGGCATATTCTAGGTAA----TATTTTAAAGACAAATA----GAAAACTTACCTTTTCAAGATGGATATAAAGC----TTAACCTTATCAAAATTACAAAATGTAAAGCATACGATTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAGTAGGTTGTCTCTTAAATATTAAACTGAACAAACA
s panTro4.chr15_GL392289_random    170158 397 -    187897 CCTCACAGGCCCTAAAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGTGTTTTCATAACAAGTGAAAAAGAGCAGTGTTAGAAGTACTTAAACATTCCATGTAAGGAGCACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAACAGGCATATTGTGGGTCG----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGATGGATCTAAAGC----TTAACCTTATCAAAATTACAAAATGTGAAGGATATGATTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAATAGGTTGTCTCTTAAATATTAAACTGAACAAACA
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102125163 397 + 121039945 CCTCACAGGCCCTAAAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGTGTTTTCATAACCGGTGAAAAAGTGCAGTGTTAGAAGTACTTAAACATTCCATGTAAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAACAGGCATATTGTGGGTCA----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGATGGATATAAGGC----TTAACCTTATCAAAATTACAAAATGTAAAGGATATGATTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAATAGGTTGTCTCTTAAATATTAAACTGAACAAACA
i nomLeu3.chr6                  N 0 C 0
s macFas5.chr7                   65241930 382 + 171882078 CCTCACAGGCCTTAAAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGTACCTGAATAATTAGATGTGTAGGTAATTGTTCTGTGTTTTCATAACCGGTGAAAAAGAACAGTGTTAGAAACCCTTAAACATTCCATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCATCATTCACTGTTTAAAAACAGGCATATTGTAGGTCA----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGATGGATATAAAGT----TTAACCTTATCAAAATTACAAAATGTAAAGCATATTATTGAAAAATATTAATGCATAGGTTTAAATATTAGTCATCATTTTAGATGTCTT---------------TCTTAAATATTAAACTGAACAAACA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59623231 382 + 162156779 CCTCACAGGCCTTACAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATTATTAGATGTGTAGATaattgttctgtgttttcataacCGGTGAAAAAGAACAGTGTTAGAAACCCTTAAACATTCCATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCATCATTCACTGTTTAAAAACAGGCATATTGTGGgtca----tattttaaagacaaata----gaaaacttATCTTTTCAAGATGGATATAAAGT----TTAACcttatcaaaattacaaaatgtaaagcatattattgaaaaatattaatgcataGGTTTAAATATTAGTCATCATTTTAGAtgtctt---------------tcttaaatattaaactGAACAAACA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3817537 382 +  24206276 CCTCACAGGCCTTAAAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGTGTAGATAATTGTTCTGTGTTTTCATAACCGGTGAAAAAGAACAGTGTTAGAAACCCTTAAACATTCCATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCATCATTCACTGTTTAAAAACAGGCATATTGTGGGTCA----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGATGGATATAAAGT----TTAACCTTATCAAAATTATAAAATGTAAAGCATATTATTGAAAAATATTAATGCATAGGTTTAAATATTAGTCATCATTTTAGATGTCTT---------------TCTTAAATATTAAACCGAACAAACA
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     185885 398 -   2853901 CCTCCCAGGACTTATAATTACTATAAAACTAATAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGTGTTTTTAT-ACTGTGGTGAAAGAGCAGTGCTATGAGCACTTAAACATTGTATGTGTGGAAAACTGCCTGAATTTATATTGGGATTTTGAAGCACCATT----------AAACTGGCATATTGTAGGTCATATTTATTTTAAAGAGAAATAGTAGGAAAACTTATCTTTTCAAGATGGATATAAAGCTTAGTTAACCTTATCAAAATTACAAAACTTAAAGCATGTGAATTGAAAATATTAATGCATAGATTTAAATATTAGGCATCATTTTAGATGTCTTTTCAAGTAGATTGTCTCTTATATATTAAACTGAACAAACT
i calJac3.chrY                  C 0 C 0
e mm10.chr9                      55156404   1 + 124595110 I
e canFam3.chr30                     30580  18 -  40214260 I
e ponAbe2.chr15                  80013421   0 +  99152023 C

a score=4242.000000
s hg38.chr15_KI270850v1_alt        172575 2 +    430880 TT
s panTro4.chr15_GL392289_random    170555 2 -    187897 TT
i panTro4.chr15_GL392289_random C 0 C 0
s nomLeu3.chr6                  102125560 2 + 121039945 TT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65242312 2 + 171882078 TT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59623613 2 + 162156779 TT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3817919 2 +  24206276 TT
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     186283 2 -   2853901 TT
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55156405 2 + 124595110 TC
i mm10.chr9                     I 1 C 0
e canFam3.chr30                     30580 18 -  40214260 I
e ponAbe2.chr15                  80013421 0 +  99152023 C

a score=266578.000000
s hg38.chr15_KI270850v1_alt        172577 122 +    430880 GAACTTGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGGA---TATTTGATAATATGGATAACAAAAAGTTCTTATTTTAAGAAATTTAGAAAATTTTTAGGCAAAGCTAGAAAA
s panTro4.chr15_GL392289_random    170557 114 -    187897 GAAC---TTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGGA---TATTTGATAATATGGATAACAAAAAGTTC-----TTAAGAAATTTAGAAAATTTTTAGGCAAAACTAGAAAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80013421 122 +  99152023 GAACATGTTATAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGGA---TATTTTATAATATGGATAACAAAAAGTTCTTATTTTAAGAAATTTAGAAAATTTTTAGGCAAAACTAGAAAA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102125562 122 + 121039945 GAACATGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGGA---TATTTTATAATATGGATAACAAAAAGTTCTTATTTTAAGAAATTTAGAAAATTTTTAGGCAAAACTAAAAAA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65242314 114 + 171882078 GAACAT--------GTTTGTGCTCAAGGTTAAATTTGCTGGGGTGATGGA---TATTTTATAATATGGATAACAAAAACTTCTTATTTTAAGAAGTTTAGAAAATTTTTAGGCAAAACTAGAAAA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59623615 114 + 162156779 GAACAT--------GTTTGTGCTCAAGGTTAAATTTCCTGGGGTGATGGA---TATTTTATAATATGGATAACAAAAActtcttattttaagaagtttagaaaatttttagGCAAAACTAGAAAA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3817921 111 +  24206276 GAACAT--------GTTTGTGCTCAAGGTTAAATTTCCTGGGGTGATGGA---TATTTTATAATATGTATAACAAAAA---CTTATTTTAAGAAGTTTAGAAAATTTTTAGGCAAAACTAGAAAA
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     186285 120 -   2853901 GAACATGATATA--GTTTGTGGCGAAGGTTAAGTTTCCTGGGGTGGTGGG---TATTTTATAATATGGAAAACAAAACCTTCTTATTTTAAGAAATTAAAAAAACATTTAGTCAAAACTAGAATC
i calJac3.chrY                  C 0 I 173
s mm10.chr9                      55156407 122 + 124595110 GAATATGATGCAGAGTTTGTGTTGAAAGTTTTTTCCAGTAGTGTGGTGGAATGTATTTTGTAATATTGAAAACAAAAC---ATTGTTGCGAAAAATTTAGAAACCAGAGAAGCAAAACAAAACAA
i mm10.chr9                     C 0 C 0
e canFam3.chr30                     30580  18 -  40214260 I

a score=364266.000000
s hg38.chr15_KI270850v1_alt        172699 178 +    430880 --TAATACCAATAATTCTACCACTCAGAATGTACCACTATCAGAATTTT------GTATCTTT-CAGTCAT---------------------------CTGCTCATCTCTTTTCTCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCCTTAAAA------------------------------------------------------AAATCAGATTTTTT-ATTATAATCTGCATTTTCACTCAACAATATTGTAGATCTGTGTCATAAGTTA
s panTro4.chr15_GL392289_random    170671 177 -    187897 --TAATACTGATAATTCTACCACTCAGAATGTACCACTATCAGAATTTT------GTATCTTT-CAGTCAT---------------------------CTGCTCATCTCTTTTCTCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCTTCTCCCTT-AAA------------------------------------------------------TAATCAGATTTTTT-TTTGTAATCTGCATTTTCACTCAACAATATTGTAGATCTGTGTCATAAGTTA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80013543 177 +  99152023 --TAATACCGATAATTCTACCACTCAGAATGTACCACTATCAGAATTTT------GTATCTTT-CAGTCAT---------------------------CTGCTCATCTCTTTTCTCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCCTT-AAA------------------------------------------------------AAATCAGATTTTTT-TTTGTAATCTGCATTTTCACTCAACAATATTGTAGATCTGTGTCATAAGTTA
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102125684 176 + 121039945 --TAATACTGATAATTCTATCACTCAGAATGTACCACTATCAGAATCTT------GTATCTTT-CAGTCAT---------------------------CTGCTCATCTCTTTTCTCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCCTT-AAA------------------------------------------------------AAATCAGATTTTTT--TTGTAATCTGCATGTTCACTCAACAATATTGTGGACCTGTGTCATAAGTTA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65242428 179 + 171882078 --TCATACCTATAATTCTACCACTCAGAATGTGCCACCATGAGAATTTT------GTATTTTTCCAGTCCT---------------------------CTGCTCATCTCTTTTCTCCTGTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCCTT-ACA------------------------------------------------------AAATCAGATTTTTTTTTTGTAATCTGCTTTTTCACTCAACAATATTGTAGATCCATGTCAGAAGTTA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59623729 179 + 162156779 --TCATACCAATAGTTCTACCACTCAGAATGTGCCACCAtgagaatttt------gtatttttccagtcCT---------------------------CTGCTCATCTCTTTTCTCCTGTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCCTt-aca------------------------------------------------------aaatcagattttttttttgtaatctgcTTTTTCACTCAACAATATTGTAGATCTGTGTCAGAAGTTA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3818032 179 +  24206276 --TCATACCGATAATTCTACCACTCAGAATGTGCCACCATGAGAATTTT------GTATCTTTCCAGTCCT---------------------------CTGCTCATCTCTTTTCTCCTGTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCCTT-ACA------------------------------------------------------AAATCAGATTTTTTTTTTGTAATCTGCTTTTTCACTCAACAGTATTGTAGATCCGTGTCAGAAGTTA
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     186578 179 -   2853901 --TATTACCTATAATTCTACCACTCAGAAGATACCACTATCAGAATTTT------GTATCTTTCTGGTCAT---------------------------CTGCTCATCTCTTTTCCCCAATGGTTA-------------------------------TATGTAT---------------------------TCCTCCTTCTTCCTT-AAA------------------------------------------------------AAATCAGATTTTTT---TGTGATCTGCTTTTTCACTCAACAATATTGTAGATTCACGTTATAACTTA
i calJac3.chrY                  I 173 C 0
s mm10.chr9                      55156529 316 + 124595110 CACAACCTCTCTAATTATACTACTCA-------CTGCTAT--AAATTTTGGATTAGTATCTTTCTAGTCATTATTCCCCTCTGTTTTATGCGGTTCCCCCCCTCCCCTTTTTTttttcttttttggggataggatctttctgtaaagtcctggaactctgtgtagaccaggctggtcttaaatgaacagtcctcctctgcctctt-aaattttggggctaaaggcatatgccatcacatctggctACCATTTTGAAAAATGATAAATGGGATTGTTT---TGTCATATTC-TTCTCACTTAACAGTGTTGTGACTCTGTATCTTTCGTTG
i mm10.chr9                     C 0 C 0
e canFam3.chr30                     30580  18 -  40214260 I

a score=163374.000000
s hg38.chr15_KI270850v1_alt        172877 164 +    430880 ----TTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATAACTATACCATCTAGTCTTTCATGTTTCCTGGTACTGACTACATAAGGGTgagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-----------------A
s panTro4.chr15_GL392289_random    170848 116 -    187897 ----TTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGACTGTACCATCTAGTCTTTCGTGTTTCCTGGTACAGACTACATAGGGGTGAGA------------------------------------------------GTGTGTGTGTGTGTGTGT-----------------A
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80013720 112 +  99152023 ----CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGACTATACCATCTAGTCTTTCGTGTTTCCTGGTACTGACTACGTAGGGGTGA----------------------------------------------------GTGTGTGTGTGTGTGT-----------------A
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102125860 128 + 121039945 ----CTCCTGTACAGTGCCTTCAGTTCTTGTGTGCTTTCTGTTGGATGACTGTACCATCTAGTCTTTCGTGTTTCCGGGTACTGACTACATAGGGGTGAGAGAGAGAGAGAgt------------------------------------gtgtgtgtgtgtgtgtgt-----------------A
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65242607 132 + 171882078 ----CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGACTGTACCGTCTAGTCATT-GTGTTTCCTGGTACTGAATACATAGGGGTGAgt------------------------------------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59623908 118 + 162156779 ----CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATAACTGTACCGTCTAGTCATT-GTGTTTCCTGGTACTGAATACATaggggtgagt------------------------------------------------gtgtgtgtgtgtgtgtgtatt--------------t
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3818211 129 +  24206276 ----CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGACTGTACCGTCTAGTCATT-GTGTTTCCTGGTACTGAATACATAGGGGTGAAt------------------------------------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAT---T
i chlSab2.chr29                 C 0 C 0
s mm10.chr9                      55156845  81 + 124595110 TTTGCTCTTCTATGATAC--------------------------GATAAAT---CCATCTAGCGAGTTCTGTCTCCTAATATTGGCCATGCAG--------------------------------------------------------GTGGCTGT-TGCATCTGT------------------
i mm10.chr9                     C 0 C 0
e calJac3.chrY                     186757   0 -   2853901 C
e canFam3.chr30                     30580  18 -  40214260 I

a score=261452.000000
s hg38.chr15_KI270850v1_alt        173041 121 +    430880 TTTTTTTTCTACCTTAACTAATGCTTTGGACATCAACAGGTAGAGCT--------------AAAT--CC----------------------TTGAAACCTTCC---AAGTGGTGGCTTTCAGTT---ATT-GCTGAATTGGTTTTTAGAGATGGAACAAATTATAT
s panTro4.chr15_GL392289_random    170964 121 -    187897 TTTTTTTTCTACCTTAACTAATGCTTTGGACATCAACAGGTAGAGCT--------------AAAT--CC----------------------TTGAAACCTTCC---AAGTGGTGGCTTTCAGTT---ATT-GCTGAATTGGTTTTTAGAGATGGAACAAATTATAT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80013832 121 +  99152023 TTTTTTTTCTACCTTAACTAATGCTTTGGACATCAACAGGTAGAGCT--------------AAAT--CC----------------------TTGAAACCTTCC---AAGTGGTGGCTTTCAGTT---ATT-GCTGAATTGGTTTTTAGAGATGAAACAAATTATAT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102125988 120 + 121039945 TTTTTTTTCTACCTTAACTAATGTTTTGGACAT-AACAGGTAGAGCT--------------AAAT--CC----------------------TTGAAACCTTCC---AAGTGGTGGCTTTCAGTT---ATT-GCTGAACTGGTTTTTAGAGATGGAACAAATTATAT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65242739 122 + 171882078 TTTTTTTTCTACCTTAACTAATG-TTTGGACATCCATAGGTAGAGCT--------------AAAT--CC----------------------TTGAAACCTTCC---AAGTGA-GGCTTTCAGTTCTCATT-GCTGAATTAGTTTCTAGACATGGAGCAAATTATAT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59624026 122 + 162156779 ttttttttctaccttaacTAATG-TTTGGACATCCATAGGTAGAGCT--------------AAAT--CC----------------------TTGAAACCTTCC---AAGTGG-GGCTTTCAGTTCTCATT-GCTGAATTGGTTTCTAGACATGGAGCAAATTATAT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3818340 122 +  24206276 TTTTTTTTCTACCTTAACTAATG-TTTGGACATCCATAGGTAGAGCT--------------AAAT--CC----------------------TTGAAACCTTCC---AAGTGG-GGCTTTCAGTTCTCATT-GCTGAATTGGTTTCTAGACATGGAGCAAATTATAT
i chlSab2.chr29                 C 0 C 0
s mm10.chr9                      55156926 136 + 124595110 ----TTTCCTATTTTAAGTAGCACTCTGAGCATCAGTAGATGGAATCCTAGTGCACATAGGAAATGCCC----------------------GTGAAGTTTTCC---TATAGGTTGCTTTTAATTCTTGTT-GCAGATTTGGTTTCTGAAGGTAGAACAAATTATAT
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     30598 150 -  40214260 ttttttttctATTTTAAATAATGCTTTGGACTCTAAGAGCTAGAGCT--------------AAAT--CCTTACGTGTATAGGTAATGTCCTTTGAAACTTCCCTGGAAGTGTTGGCTTTCCATTCCTATTCAATCAGTTGGTTTCTGGAGACAATACAAATTGCAT
i canFam3.chr30                 I 18 I 5
e calJac3.chrY                     186757   0 -   2853901 C

a score=21032.000000
s hg38.chr15_KI270850v1_alt        173162 11 +    430880 TG-----TATGGAAAC
s panTro4.chr15_GL392289_random    171085 11 -    187897 TG-----TATGGAAAC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80013953 11 +  99152023 TG-----TATGGAAAC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126108 11 + 121039945 TG-----TATGGAAAC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65242861 11 + 171882078 TG-----TATGGAAAA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59624148 11 + 162156779 TG-----Tatggaaaa
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3818462 11 +  24206276 TG-----TATGGAAAA
i chlSab2.chr29                 C 0 C 0
s mm10.chr9                      55157062 16 + 124595110 TGTACTATATAGAAAC
i mm10.chr9                     C 0 C 0
e calJac3.chrY                     186757  0 -   2853901 C
e canFam3.chr30                     30748  5 -  40214260 I

a score=507787.000000
s hg38.chr15_KI270850v1_alt        173173 298 +    430880 -tttttttttttttttttgagacaaagtctcac-cttgtcgcccaggctggagagcaatggcatgatcttggctcactgcaatctctgcctcccaggttcaagtgattctcttgcctcagcctcccaagtagttgggattacaggtgcttgccaccatgcccggctaatttttgtctttttactagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggcctcccaaactactgggattacaggcataagccaccatacccagc
s panTro4.chr15_GL392289_random    171096 298 -    187897 -tttttttttttttttttgagacaaagtctcac-cttgtcacccaggctggagggcaatggcatgatcttggctcactacaacctccacctcccaggttcaagtgattctcttgcctcagcctcccgagtagttgggattacaggggcctgccaccatgcccggctaatgtttgtgtttttactagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggtctcccaaagtactgggattacaggcatgagccaccatacccagc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80013964 294 +  99152023 -----ttttcttttttttgagacaaagtctcac-cttgtcgcctaggctggagggcaatggcatgatcttggctcattacaacctccgcctcccaggttcaagtgattctcttgcctcagcctcctgagtagttgggattacaggtgcctgccaccatgcccggctaatttttgtgtttttactagagatggggtttcatgatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggcctcccaaaatactgggattacaggcatgagccaccatacccagc
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126119 299 + 121039945 ttttttttttttttttttgaaacaaagtctcac-cttgtcgcccaggctggagggcaatggcatgatcttggctcactacaacctccgcctcccaggttcaaatgattctcttgcctaagcctcccgagtacttgggattacaggtgcctgccaccatgcccagctaatttttgtgtttttactagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcgggtgatccactcaccttggcctcccaaagtactgggattacaggcatgagccaccatacccagc
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65242872 292 + 171882078 --------tttgttttttgagataaagtctcgctcttgtcacccaggctggagtgcagtggcatgatcttggctcactacaaccactgcctcccagattcaagtgattctcctgcctcagcctcccgagtagcagggattacaggagcctgccaccatgcctggctaatttttgtatttttagtagagatggggtttcatcatgttggccgggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggc
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59624159 292 + 162156779 --------tttgttttttgagataaagtctcactcttgtcacccaggctcgagtgcagtggcatgatcttggctcactacaaccactgcctcccagattcaagtgattctcctgcctcagcctcccgagtagcagggattacaggagcctgccaccatgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccgggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggc
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3818473 292 +  24206276 --------tttgttttttgagataaagtctcgctcttgtcgcccaggctggagtgcagtggcatgatcttggctcactacaacctctgcctcccagattcaagtgattctcctgcctcagcctcccgagtagcagggattacaggagcctgccaccatgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggc
i chlSab2.chr29                 C 0 C 0
e mm10.chr9                      55157078   0 + 124595110 C
e calJac3.chrY                     186757   0 -   2853901 C
e canFam3.chr30                     30748   5 -  40214260 I

a score=10444.000000
s hg38.chr15_KI270850v1_alt        173471 4 +    430880 cTTT
s panTro4.chr15_GL392289_random    171394 4 -    187897 cTTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80014258 4 +  99152023 cTTT
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126418 4 + 121039945 cTTT
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65243164 4 + 171882078 cTTT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59624451 4 + 162156779 cttt
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3818765 4 +  24206276 cTTT
i chlSab2.chr29                 C 0 C 0
s canFam3.chr30                     30753 4 -  40214260 CTTT
i canFam3.chr30                 I 5 C 0
e mm10.chr9                      55157078 0 + 124595110 C
e calJac3.chrY                     186757 0 -   2853901 C

a score=323750.000000
s hg38.chr15_KI270850v1_alt        173475 149 +    430880 TTTTCTTCTAGGTACCAGCTTTTATTTATCAGATTGGTATAAATGTTAGAAAGCGTGCAATGAAATGGGCATTTTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCATTCTAGAAACTTGCCTAAC
s panTro4.chr15_GL392289_random    171398 149 -    187897 TTTTCTTCTAGGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGCGTGCAATGAAATGGGCATTTTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCATTCTAGAAACTTGCCTAAC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80014262 149 +  99152023 TTTTCTTCTAGGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAACTGGGCATTCTCACAGTCATGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCATTCTAGAAACTTGCCTAAC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126422 148 + 121039945 TTTTCTTCTGGGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCA-TCTAGAAACTTGCCTAAC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65243168 149 + 171882078 TTTTCTTCTAGGTACCAGCTTTTACTTATCAGATTGGTAAAAATACTAGAAAGTGTGCAATGAAATGTGCATTCTCACAGTCATGGCAGAAAGTATAATTATCTTTGACTTTCCAGAAAGCAGTTTGGCTTTCTAGAAACTTGCCTAAC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59624455 149 + 162156779 ttttcttctaggtaCCAGCTTTTACTTATCAGATTggtaaaaatattagaaagtgTGCAATGAAATGGGCAttctcacagtcatggcagaaagcatAATTATCTTTGACTTTCCAGAAAGCAGTTTGGCTTTCTAGAAACTTGCCTAAC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3818769 148 +  24206276 TCTTCTTCTAGGTACCAGCTTTTACTTATCAGATTGGTAAAAATATTAGAAAGTGTGCAATGAAATGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATCTTTGGCTTTCCAGAAAGCAGTTTGGC-TTCTAGAAACTTGCCTAAC
i chlSab2.chr29                 C 0 C 0
s mm10.chr9                      55157078 134 + 124595110 TTTGCTTTCAGCTTCCAGTT-----TTATCAGATGGGTAAAAATGTTAGCAC-TGGGTACTGAG-TGAG-ATCACCACAGTAA-GACAGGAGGTATAGTTATCTATAGCCCTCT-----GACCTCATGCGTTCTCGCAGAACGCTGAG-
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     30757 126 -  40214260 TTTCCTTCCACGTAGGAGCTTTTATTTAAC--ATTGGTAAAAATGTTAGCAAGTGTGCCGTGAAATGGGTGTTCTCACAGTCATGACAGAAAATA----------TGACCCTCTAGAAAACAATTTGGT-----------TTGCATAAT
i canFam3.chr30                 C 0 C 0
e calJac3.chrY                     186757   0 -   2853901 C

a score=396168.000000
s hg38.chr15_KI270850v1_alt        173624 151 +    430880 CTCTTCCCATTTAGGCAAGATGAATTCTCACTACCCGTAGGTGGCCAACCTTGTCCTTGTGATTCCGTATCTTCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
s panTro4.chr15_GL392289_random    171547 142 -    187897 CTCTTCCCATTTAGACAAGATGAATTGTGAC-------AG--GGCCAGCCTTGTCCCTGTGATTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80014411 151 +  99152023 CTCTTCCCATTTAGGCAAGATGAATTCTGACTACCTCTAGGTGGCCAATCTTGTCCCTGTGATTCCATCTTTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTGATCACTGGAAATG
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126570 151 + 121039945 CTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCTAGGTGGCCATCCTTGTCCCTGTGATTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGTGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65243317 151 + 171882078 CTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCAAGGTGGCCCATCTTGTCCTTGTGGTTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59624604 151 + 162156779 CTCTTCCCATTTAGGCAAGATGAATTTTGACTACCCCAAGGTGGCCCATCTTGTCCCTGTGGTTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3818917 151 +  24206276 CTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCAAGGTGGCCAATCTCGTCCCTGTTGTTCCATATCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     186757 150 -   2853901 CTCTTCCTGTTTAGGCAGGATGAATTCTGATTACCCCAAG-TGGCTAGCCTTGTCCCTGTGATTCCAGATCTCCTAGAAAGAGAGGTCTAGCCTTAGGGAAAACTCAGATTTTCTTGGTTTAGCCCACCTCATAGCTAATCTCTGGAAATG
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55157212 112 + 124595110 -TACTCCACACTAGCCAGAAT---------TTACCT----GTGACCGACC--------------CCAACTGTCCCACAACAGGA----CAGTCAGAGAGAAGACTTTG-------TGGCTCCCCCCACCTGAAAGCTCATTATTGGGAATG
i mm10.chr9                     C 0 I 362
s canFam3.chr30                     30883 146 -  40214260 -CCCTCTCTGTTTGGAAAGATAAAT----ACTATCTCAGGGTGGCCAACTTTGTCCTTAAGACTCTAGAGCATCCAGAAGGTGAATTTTAGTTCCAGAGAAGACCTCGATTTGTCTCACTTAGCCCATCTGACAGCTAATCACTGGGAGTA
i canFam3.chr30                 C 0 C 0

a score=45346.000000
s hg38.chr15_KI270850v1_alt        173775 18 +    430880 AGGTGGGCCGGTAGAGTC
s panTro4.chr15_GL392289_random    171689 18 -    187897 GGGTGGGCCGGTAGAGTC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80014562 18 +  99152023 GGGTGGGCCGGTAGAGTC
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126721 18 + 121039945 GGGTGGGCCGGTAGAGTC
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65243468 18 + 171882078 GGGTGGGCTGGTAGACTC
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59624755 18 + 162156779 GGGTGGGCTGGTAGACTC
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3819068 18 +  24206276 GGGTGGGCTGGTAGACTC
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     186907 18 -   2853901 CGGTATGCTGGTAGAGTC
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     31029 18 -  40214260 GGATGGGCTCATAGAGAC
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55157324 362 + 124595110 I

a score=538776.000000
s hg38.chr15_KI270850v1_alt        173793 206 +    430880 CTTTGGTCAGGTTTTGTGTCAAGAGAGGAATGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTATGTAAGTTAACGTAGAATGA---CAAAGGAATGTTTC---------TTCCAGGGAAGAAATTCTAGGGAA----GGAA-GAAAGTGGAGGGGAAGGcagcagttctcaaagtt-tt--gaggtcaggattcctttacact-cttaaaagt
s panTro4.chr15_GL392289_random    171707 206 -    187897 CTTTGGTCAGGTTTTGTGTCAAGAGAGGGATGTGGAAAGATGGGAGAGAGGTAGCAAAACTGGCCTCAATGGAACTATGTAAGTTAACATAGAATGG---CAAAGGAATGTTTC---------TTCCAAGGAAGAAATTCTAGGGAA----GGAA-TAAAGTAGAGGGGAAGGcagcagttctcaaagtt-tt--ggggtcaggattcctttacact-cttaaaagt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80014580 206 +  99152023 CTTTGGTCAGGTTTTGTGTCAAGAGAGGGATGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAGTGGAACTATGTAAGTTAACATAGAATGG---CAAAGGAATGTTTC---------TTCCAAGGAAGAAATTCTAGGGAA----GGAA-GAAAGTGGAGGGGAAGGcagcagttctccaagtt-tt--ggggtcaggattcctttacact-cttaaaagt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126739 187 + 121039945 CTTTGGTCAGGTTTTGTGTCAAGAGCGGGATGTGGAAAGATGGGAGAAAGATAGCAAAACTGGCCTCAATGGAACTATGTAACTTAACATAGAATGG---CAAAGGAATATTCT----------------------ATTCTAGGGAA----GGAA-GAAAGTGGAGGGGAAGGcagcagttctcaaagtt-tt--ggggtcaggattcctttacact-ct------t
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65243486 205 + 171882078 CTTTGGTCAGGTTTTGTGTCAAGAGAAGGATGTGGAAAGACGGGAGAGAGGTAGCAAAACTGGCCTCAATTGAACTAAATAAGTTAACGTAGAATGG---CAAAGGAATGTTTT----------TCCAAGGAAGAAATTCAAGGGAA----GGAA-GAAAGTGGAGGGGAAGAcagcagttctcaaagtt-tt--ggggtcaggatacctttacact-cttaaaaat
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59624773 205 + 162156779 CTTTGGTCAGGTTTTGTGTCAAGAGAAGGATGTGGAAAGACAGGAGAGAGGTAGCAAAACTGGCCTCAATTGAACTAAGTAAGTTAACGTAGAATGG---CAAAGGAATGTTTT----------TCCAAGGAAGAAAttcaagggaa----ggaa-gaaagtggAGGGGAagacagcagttctcaaagtt-tT--GGGGTCAGGATtcctttacact-cttaaaaat
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3819086 205 +  24206276 CTTTGGTCAGGTTTTGTGTCAAGAGAAGGATGTGAAACGACGGGAGAGAGGTAGCAAAACTGGCCTCAATGGAACTAAGTAAGTTAACGTAGAATGG---CAAAGGAATGTTTT----------TCCAAGGAAGAAATTCAAGGGAA----GGAA-GAAAGTGGAGGGGAAGgtagcagttctcaaagtt-tt--ggggtcaggattcctttacact-cttaaaaat
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     186925 207 -   2853901 CTTTGGTCAGATTTTGTGTCAAGAGAGGGAGGTGGAAGGATGGGAGGGAGGTAGCAAAACTGGCCTCAGTGGAACTATATAAGTTAATATAGAATGG---CAAAGGGATGTTTC---------TTCCATGGAAGAAATACTAGGGAA----GGAAGGAAAGTGGAGGGGAAGGcagaagttctcaaactt-tt--agtgtctggactcctttacact-cttaaaaat
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55157686 195 + 124595110 aTTTGGTCAGGTTTTGTGTCAAG-------------------GGAGGGAGGTATCAAAACCAGCCCCAAAGGAAC-ATGTAGGTTAATGGAGAATGGAGAAAAGGAGGTGTTTTTTTTTTTTTTTCCCAGGAGGAAAGGCTAGGGGATTTGGCAG-GAGAGAAGTTGGAA-------Agttcttaatatt-tttgggagtcaggacttacttaaact-cttaaa--t
i mm10.chr9                     I 362 C 0
s canFam3.chr30                     31047 199 -  40214260 CTGTGCCCAAGTTTTGGGTCAAGGGAAAGAGATGGGCAGATGGGAACAAGTTGGGGAAACGAGTTCCAGTAGAACCACATAGGTTAGTAGAGAGTGG---TGA-GGGATGTTTC---------TTGTAAGGAAGGGCT-----GGGC----TGCA-GGAGGT-GTGGAGAAGGCAGCTATTCTAAAACTTCTT--GGAGTTA--ACACTTTCATACTGTTTAAAAGT
i canFam3.chr30                 C 0 I 4788

a score=842423.000000
s hg38.chr15_KI270850v1_alt        173999 413 +    430880 atattgagggcccaaggagcttttctgtatataggttatatctattggtatttatcactaaaaattaaatcagaaatacttaaaatat----tccttaaaagctcaccaaattttgttatgaatgcttttatgaaaagaaaatttctaaacccaaagtagta------caatctt-acaccttttgcaaatttcgttgatgtttgatatgtcatttgcacctgca---------------ttcaatttatt--------gtgtgatatttgcttg------------aaaaaatgtgaacaaagaacaatctca--------------tacag--------------------------------ataGGCATTTTAGATCCTTATGGATAttttttatt------ttttatttttttttatttttgagatggggtctttctctgtctcccaggctggaatgcagtgctatgatcacggctcactggagcctcattctctggggactcagg
s panTro4.chr15_GL392289_random    171913 419 -    187897 atattgagggcccaaggagcttttgtgaatgtaggttatatctattggtatttatcactagaaattaaatcagaaatacttaaaatat----tccttaaAAGCTCACAAAATATTGTTATAAATGCTTTTATGATAAGAAAATTTCTAAACCCAAGgtagta------cagtctt-acatcttttgcaaatttctttgatgtttgatatgtcatttgtacctgca---------------ttcaatttatt--------gtgtgatatttgcttg------------aaaaattgtgaacaaatgacagtctta--------------tacag--------------------------------ataGGCATTTCAGATCATTATGGATATTTCTtttttctttctttcttttttttttttttttgaggtggggtctttctgtgtctcccaggctggaatgcagtgctatgatcacggctcactggagcctcattctctggggactcagg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80014786 412 +  99152023 atattgagggcccaaggagcttttctgtatataggttatatctattggtatttatcactagaaattaaatcagaaatacttaaaatat----tccttaaaagctcacaaaatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtaata------caatcttaacatcttttgcaaatttctttgatgtttgatatgtcatttgcacctgca---------------ttcaatttatt--------gtgtgatatttgcttg------------aaaaaatgtgaacaaaggacaatctca--------------tacag--------------------------------ataGGCATTTTAGATCATTATGGATAtttcttt--------ttttttttttttttttttttgagatggggtctttctctgtctcccaggctggaatgcagtgctatgatcacggctcactggagcctcattctctggggattcagg
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102126926 395 + 121039945 atattgagggcccaaggagcttttctgtatataggttatatctattggtatttatcattagaaattaaatcagaaatacttaaaatat----tccttaagagctcaccaaatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagta------caatctt-acatcttttgcaaatttctttgatgtttgatatgtcgtttgcacctgca---------------ttcaatttatt--------gtgtgatatttgcttg------------aaaaaatgtgaacaaaggacagtctca--------------tacag--------------------------------ataGCCATTTTAGATCATTATGGA------------------------tttttatttttttgagatggggtcttgctctgtctcccaggctggaatgcagtgctatgatcacagctcactggagcctcattctctggggaatcagg
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                   65243691 408 + 171882078 atattgagggcccaaggagcttttgtgtatgtaggtgatatctactggtatttatcactagaaattaaatcagaaatattcaaaatat----tctttaaaggttcaccaaatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagta------caatctt-a-atcttttgcaaatttctttggtgtttggtatgtcatttgtgtctgca---------------ttcaatttatt--------gtgtgatatttgcttg-----------aaaaaaatttgaacaaaggccaatgtca--------------tacag--------------------------------ataGCCATTTTAGATCATTGTGGATAtttc-----------tttttctttttcttttttttgagatggggttttgctctgttgcccaggctggaatgcagtggtatggtcatggatcactggagcctcagtctctggggactcagg
i macFas5.chr7                  C 0 I 77144
s papAnu2.chr7                   59624978 408 + 162156779 atattgaggGCCCAAGGAGCTTTTGTGTATGTAGGTGATATCTGCTGGTATTTATCACtagaaattaaatcagaaatattcaaaatat----tctttaaaggTTCACCAAATATTGTTATAAAtgcttttatgaaaagaaaatttccaaacCCAAAGTAGTA------CAATCTT-A-atcttttgcaaatttctttggTGTTTGGTATGTCATTTGTGTCTGCA---------------TTCAATTTATT--------GTGTGATATTTGCTTG-----------aaaaaaaTTTGAACAAAGGCCAATGTCA--------------TACAG--------------------------------ACAGCCATTTTAGATCAttgtggatatttc-----------tttttctttttcttttttttgagatggggttttgctctgttgcccaggctggaatgcagtggtatggtcATGGATCACTGGAGCCTCAGTCTCTggggactcagg
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3819291 408 +  24206276 atattgagggcccaaggagcttttctgtatgtaggtgatatctactggtatttatcactagaaattaaatcagaaatattcaaaatat----tctttaaaggttcaccaaatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagta------caatctt-a-atcttttgcaaatttctttggtgtttggtatgtcatttgtgtctgca---------------ttcaatttatt--------gtgtgatatttgcttg-----------aaaaaaatttgaacaaaggccagtgtca--------------tacag--------------------------------aTAGCCATTTTAGATCATTGTGGAtatttc-----------tttttctttttcttttttttgagatggggtcttgctctgttgcccaggctagaatgcagtggtatggtcatggatcactggagcctcagtctctggggactcagg
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     187132 435 -   2853901 atattgagggcccaacgagcttttgtttatgtaggatatatctactggtatttaccaccagaagttaaatcagaaatatttaaaacattaagtctttaaaaactcatcacatattgttacaaatgctttcatgaaacgacattttctaaaacaaaaatagaataggagcagtctt-acattttttgcaaatttcattgatgtttggtctgtcatttgcttctgca---------------tttaat---tt--------gcgtgatatttgcttg---------------aagtgtaaacaaaatccaacctca--------------tacagatacctggttagaaaaattctagcatgttttaatagccattttaaataattacgggtattcc----------------cccccttttttttttgaggtggggtgtcactgtattgcccagactggagtacagtggtgtgatcacagctcactgcagccccagtctcttgggact----
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55157881 366 + 124595110 atatcacaggtctaaggaaacttcatttttatcagctatacct-ttgatatttatcattaaaaattaaaacag--atatttaaaacat---------------------------------------------------------------------taatA--------------ACTAATACTGCAAGTTTCTTTGATACTTGTTCTGTCATTTGCTTCTGCACTTTTACatatatacttaaatatatttatatgtattacaatatatactaattctatgtatttaaaatatatttttaaaaaacatttttataGTATATGGATTGTAAAA--------------------------------CTATATATTCTAAAAATTTTTGTTTGTTTT-----------TGCTTTTGTttttgttttttgagacagggtttctctgtgtagccctgactg---tccaggaac----tcatagaccaggctggcctc---------gaactcaga
i mm10.chr9                     C 0 C 0
e canFam3.chr30                     31246 4788 -  40214260 I

a score=126872.000000
s hg38.chr15_KI270850v1_alt        174412 82 +    430880 tgctcctcccacc-------tcagcctccagagtagctgggactacaggtgtgtactactccacctagc--------taattt-tttgtattttttgt
s panTro4.chr15_GL392289_random    172332 82 -    187897 tgatcctcccacc-------tcagcctccagagtagctgggactacaggtgtgtactaccccaccttgc--------taattt-tttgtattttttgt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80015198 82 +  99152023 tgatcctcccacc-------tcagcctccagagtagctgggactacaggtgtgtactactctacctagc--------taattt-tttgtattttttgt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102127321 89 + 121039945 tgctcctcccaccccagcctccagcctccagagtagctgggacaacaggtgtgtactaccccacctagc--------taattt-tttgtattttttgt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107334135 82 - 171882078 tgatccacccgcc-------ttggcctcccaaagtgctggaattataggcatgagccaccgcacctggT--------GGGAAT-TGCCTTTTCTTTCA
i macFas5.chr7                  n 77144 C 0
s papAnu2.chr7                   59625386 82 + 162156779 tgatcctcccacg-------ttaGCCTCcacagtagttgggactacaggtgtgtactaccacacctagc--------tatttt-tttgtatttttcgt
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3819699 82 +  24206276 tgatcctcccacc-------ttagcctccacagtagttgggactacaggtgtgtactaccacacctagc--------tatttt-tttgtatttttcat
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     187567 42 -   2853901 ---------------------------------------------caggtgtgtgtcatcacatctggc--------taattt-tttgtattttt--t
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55158247 89 + 124595110 -aatttgcctgcc-------tctgcctctcaagt-gctgggattaaaggcgtgcgccactacgcttggcCTAAAATGtattttatgtgtatgttttgt
i mm10.chr9                     C 0 I 6645
e canFam3.chr30                     31246 4788 -  40214260 I

a score=23640.000000
s hg38.chr15_KI270850v1_alt        174494 14 +    430880 agatacag-ggtttt
s panTro4.chr15_GL392289_random    172414 14 -    187897 agagatag-ggtttt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80015280 14 +  99152023 agagacag-ggtttt
i ponAbe2.chr15                 C 0 C 0
s nomLeu3.chr6                  102127410 14 + 121039945 agagacaa-ggtttt
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107334217 15 - 171882078 AGGGACTGTAAATCT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59625468 14 + 162156779 agagacag-ggtttt
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                   3819781 14 +  24206276 agagacag-ggtttt
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     187609 14 -   2853901 agagacaa-ggtttt
i calJac3.chrY                  C 0 C 0
e mm10.chr9                      55158336 6645 + 124595110 I
e canFam3.chr30                     31246 4788 -  40214260 I

a score=12026.000000
s hg38.chr15_KI270850v1_alt        174508 5 +    430880 gccat
s panTro4.chr15_GL392289_random    172428 5 -    187897 gccat
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15                  80015294 5 +  99152023 gccat
i ponAbe2.chr15                 C 0 I 59017
s nomLeu3.chr6                  102127424 5 + 121039945 gccat
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107334232 5 - 171882078 GCAGT
i macFas5.chr7                  C 0 I 1
s papAnu2.chr7                   59625482 5 + 162156779 gccat
i papAnu2.chr7                  C 0 I 3781
s chlSab2.chr29                   3819795 5 +  24206276 gccat
i chlSab2.chr29                 C 0 I 51482
s calJac3.chrY                     187623 5 -   2853901 tctat
i calJac3.chrY                  C 0 I 4365
s canFam3.chr30                     36034 5 -  40214260 GCCAT
i canFam3.chr30                 I 4788 C 0
e mm10.chr9                      55158336 6645 + 124595110 I

a score=4006.000000
s hg38.chr15_KI270850v1_alt        174513 3 +    430880 AGG
s panTro4.chr15_GL392289_random    172433 3 -    187897 AGG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10034770 3 +  10928107 AGG
i ponAbe2.chr15_random          n 59017 C 0
s nomLeu3.chr6                  102127429 3 + 121039945 AGG
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107334238 3 - 171882078 AAA
i macFas5.chr7                  I 1 I 8
s papAnu2.chr7                   59629268 3 + 162156779 AGA
i papAnu2.chr7                  I 3781 C 0
s canFam3.chr30                     36039 3 -  40214260 AGG
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55158336 6645 + 124595110 I
e calJac3.chrY                     187628 4365 -   2853901 I
e chlSab2.chr29                   3819800 51482 +  24206276 I

a score=712676.000000
s hg38.chr15_KI270850v1_alt        174516 316 +    430880 TATTCAAATAGAAAGTTTTGTTGTTG-TTTTAGTATATAAAGAAATATAACTTTCCATGTTGAAAAAATTTTAAAAACC-ttttttta-aattataaaactcataagcaacc--------------attgttgagaaaattagtaaagtacagaa-----aaaagaaaaaaattaaagtctcccataatttctttacctaatataaccactattgacagttgacatgatgg-------ccattttctaccagtatatgttttttctttgctggtaaaatacata-acccttacatatatgtttAAATAGTTGAGGTCGTATTCTCCATAGGTT------------------TATAttc---tttt----tt
s panTro4.chr15_GL392289_random    172436 323 -    187897 TATTCAAATAGAAAGTTTTGTTTTTG-TTTTAGTATATAAAGAAATATAACTTTCCATGTTGGAAAAATTTTTAAAACC-ttttttt--aattataaaactcataagcaacc--------------attgttgagaaaattggtaaagtacagaaaagataaaagaaaaaaattaaagtctcccataatttctctatctaatataaccactattgactgttgacatgatgg-------ccattttctaccagtatatattttttctttgctattaaaatacata-acccttacacatatgtttaaatagttgaggtcatattccctatagttt------------------tatattcttttttt----tt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10034773 321 +  10928107 TATTCAAATAGGAAGTTTTGTTTTTGTTTTTAGTATATAAAGAAACATAACTTTCCATGTTGGAAAAATTTTAAAAACC-tttttt----attataaaactcataagcaacc--------------attgttgagaaaattagtaaagtacagaaaagaaaaaagaaaaaaattaaagtctcccataatttctctatctaatataaccactattgacagttgacatgatggccattttccattttctaccagtatatattttttctttgctagtaaaatacata-acccttatatatatgtttaaatagttgagatcatattctctataGttt------------------tatattc------------t
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102127432 290 + 121039945 TATTCAAATAGAAAGTTTTGTTTTTG-TTTTAGTATAT-------------------------AAAAACTTTAAAAACC-ttttttt--aattataaaactcataagcaacc--------------attgttgagaaaattagtaaagtacagaaaagagaaaagaaaaaaattaaagtctcccataatttctctacctaatataaccacta-tgacagttgacctgatgg-------ccattttctaccagtgtatattttttctttgctagtaaaatgcata-acccttatacatgtgtttaaatagttgaggtcatattctctatagttt------------------tatattc-----------tt
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106596213 309 - 170124641 TATTCAAATAGAAAGTTTTGTTTTTATTTTTAGTATGTAAAGAAATATAACTTTCCATGTTGGAAAAATTTTAAAAACC-Cttttta--aattataaaactcataagcaacc--------------attgttgagaaaattagtaaagtacagaaaaga-aaaagaaaaaaattaaagtcttccgtaatttctctacctaatattgccactattgacagttgacatgatgg-------ccattttctaccagtatatattttttctttggtagtaaaatacata-tcccttatagatatgtttaaatagttgaggtcatattctctatagttt------------------------------------tt
i rheMac3.chr7                  N 0 C 0
s macFas5.chr7                  107334249 309 - 171882078 TATTCAAATAGAAAGTTTTGTTTTTATTTTTAGTATGTAAAGAAATGTAACTTTCCATGTTGGAAAAATTTTAAAAACC-Cttttta--aattataaaactcataagcaacc--------------attgttgagaaaattagtaaagtacagaaaaga-aaaagaaaaaaattaaagtcttccgtaatttctctacctaatattgccactattgacagttgacatgatgg-------ccattttctaccagtatatattttttctttggtagcaaaatacata-tcccttatagatatgtttaaatagttgaggtcatattctctatagttt------------------------------------tt
i macFas5.chr7                  I 8 C 0
s papAnu2.chr7                   59629271 360 + 162156779 TATTCAAatagaaagttttgtttttgtttttagtatataaagaaatataacttTCCAtgttggaaaatttttaaaaaccttttttta--aaatctaaaactcATAAGCAACTTCATAATTCTCATAATTACTAAGAAAATTGGTaaagtacagaaaaga-aaaaagaaaaaattcaagtcTCCCATAATTTCTCTACCTAATATAACCACTATTGACAGTTGACATCATGG-------CCATTTTCTaccagtatatattttttctttgctagTAAAATACATA-ACCCTTATACATATGTTTCAATAGTTGAGGTCATATTCtctaaagttttatatatatatatatatatatatatatatatatatata
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21052207 334 -  24206276 TATTCAAATAGAAAGTTTTGTTTTTATTTTTAGTATGTAAAGAAATATAACTTTCCATGTTGGAAAAATTTTAAAAACC-ttttttt--aattataaaactcataagcaacc--------------attgttgagaaaattagtaaagtacagaaaaga-aaaagaaaaaaattaaagtcttccataatttctctacctaatattgccactattgacagttgacatgatgg-------ccattttctaccagtatatattttttctttggtagtaaaatacata-tcccttatagatatgtttaaatagttgaggtcatattctctatagttt-----------tTATATATATAtttttatttttattat
i chlSab2.chr29                 n 51482 C 0
s canFam3.chr30                     36042 297 -  40214260 TACACAAAGAAAATGTTTTTTTTTTT-TTTCAATATATGAAGAAATATAACTTTCCATTTTACAGAATTTGGAAAATCT-ATTTTCTATGATTTTAAAAC---TAAATGACT--------------ATTGTGAGAGAACTTAGTTaa-------------aatgaagggaaatagaaattttggagaagatttctgcctaagataaccact-------gtagacatgatag-------ctattttctatcagcat---ttttccccttgctaataaaatgtatagactctaatagatatgcttaaagagttgaggtcatattcaatacagttt------------------tatactctttttt-------
i canFam3.chr30                 C 0 I 51
e mm10.chr9                      55158336 6645 + 124595110 I
e calJac3.chrY                     187628 4365 -   2853901 I

a score=615535.000000
s hg38.chr15_KI270850v1_alt        174832 310 +    430880 ttttttttttttgacgcggagtctcactttgtcgcccaggctgga--------------------------------------------------------atgcagtggcgtgatctcagctcactggaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccattcccggctaattttttgtattttttagtagagatggggtttcaccatgttagccaggatggtctggatctcctgaccgcgtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcccagccCTTTTATAT--TCTTTTA
s panTro4.chr15_GL392289_random    172759 310 -    187897 ttttttttttttgagacagagtctcgctctgtcacccaggctgga--------------------------------------------------------gtgcagtgccgtgatctcggctcactgcaagctccacctcctgggttcccaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccattcccggctatttttttgtattttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatggtctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggccCTTTTATAT--TCTTTTA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10035094 311 +  10928107 ttttttttttttgagacagagtcttgctctgtcacccagcctgga--------------------------------------------------------gtgcagtggcgtgatcttggctgactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggactacaggcatctgccaccatgcccggctaattttttgta-tttttagtagagatggggtttcaccctgttagccaggatggtctcgatctcctgacctcatgatctgcccgccgcggcctcccaaagtgctcggattgcagacatgagccactgcgcccggccCttttatattatttttta
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102127722 310 + 121039945 ttttttttttttgagacagagtctctctctgtcacccaggctgga--------------------------------------------------------gtgcagtggcatgatctcagctcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccatgcccggataactttctgtattttttagtagaggtggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcccaccctggccttccaaaatgctgggattacaggtgtgagccactgcgcctggcTGTCTTATAT--TCTTTTA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106596522 306 - 170124641 tttttttttttt-----------------------------tttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------gctccgcctcccgggttcacatcattctcctgcctcagcctccccagtagctgggactacaggtgcccaccaccatgcccagctaa-tttttgtattttttagtagagatgggggttcaccattttagccaggatggtctcgatctcctgatctcatgttctgcctgcctcagcctcccaaagtgctgggattacaggtgtcagccactgtgcccggcccttttatat--tctTTTA
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107334558 309 - 171882078 ttttttttttttaagacgaagtctcgctctgttgcccaggctgga--------------------------------------------------------gtgcagtggcatgatctgcgctcactacaagctctgcctcctgggttcacatcattctcctgcctcagtctccccagtagctgggactacaggtgcccaccaccatgcccagctaa-tttttgtattttttagtagagatgggggttcaccattttagccaggatggtctcgatctcctgatctcatgttctgcctgcctcggcctcccaaagtgctgggattacaggtgtcagccactgtgcccggcccttttatat--tctTTTA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59629631 310 + 162156779 tatatatttttcgagatggagtcttgctctgttgccaaggctgga--------------------------------------------------------gtgcagtggtgcaatctggactcactgcaagctccacctcctgggttcacaccattcatctgcctcagcctccccagtagctgggactgcaggtgcccaccaccatacccggctaattttttgtattttttaatagagatggggtttcaccatgttagccaggatggtctcgacctcctgaccttgtgatctgcccgcctcggcctcccaaagtgctgggatcataggcatgagccactgcacccggcccttttatat--tctttta
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21052541 309 -  24206276 ttttttttttttgagacgaagtctcgctctgtcgcccaggctgga--------------------------------------------------------gtgcagtggcatgatctgtgctcactgcaagctttgcctcccaggttcacatcattctcctgcctcagcctccccagtagctgggactacaggtgcccaccaccatgcccagctaa-tttttatattttttagtagagatgggggttcaccattttagccaggatggtctcgatctcctgatctcatgttctgcctgcctcggcctcccaaagtgctgggattacaggtgtcagccactgtgcccagccCTTTTATAT--TCTTTTA
i chlSab2.chr29                 C 0 C 0
e mm10.chr9                      55158336 6645 + 124595110 I
e calJac3.chrY                     187628 4365 -   2853901 I
e canFam3.chr30                     36339  51 -  40214260 I

a score=421777.000000
s hg38.chr15_KI270850v1_alt        175142 162 +    430880 AAAAGTATTTACTGTATTTTCCCATGATGTCATAGTCTTTATagaaaaataacaatcattattttcagttgacatgattgtttacctaaaaatatccaaaggaaccaactgaaaaaaaacaatttttaagattactggttaaaagttcttttatataaaaat
s panTro4.chr15_GL392289_random    173069 158 -    187897 AAAAGTATTTACTGTATTTTCCTGTGATGTCATAGTCTTTATAGAaaaat---aatcattattttcagttgacatgattgtttacctaaaaatatccaaaggaaccaactg-agaaaaacaatttttaagattactggttaaaagttcttttatataaaaat
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10035405 162 +  10928107 aaaaGTATTTACTGTATTTTCCCATGATGTCGTAGTCTTTATagaaaaataacaatcattattttcagttgacatgattgtttacctaaaaatatccaaaggaaccaactgaaaaaaaacaatttttaagattactggctaaaagcccttttatataaaaat
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102128032 157 + 121039945 AAAAGTATTTACTGTATTTTCCCATGATGTCATAGTCTTTATagaaaaataacaatcattattttcagttgacgtgattgtttacctaaaaatagcc-aaggaaccaactg----aaaaaaatttttaagattactggttaaaagttcttttatataaaaat
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106596828 157 - 170124641 AAAAGTATTTACTGTATTTTACCATGATGTCATAGTGTTTATagaaaa--aaaaatcattattttcagttgacatgattgtttacctgaaaatatccaaaggaaccaactg--aaaaaacaatttttaagattagtggctaaaagctc-gttatataaaaat
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107334867 157 - 171882078 AAAAGTATTTACTGTATTTTACCATGATGTCATAGTGTTTATagaaaa--aaaaatcattattttcagttgacatgattgtttacctgaaaatatccaaaggaaccaactg--aaaaaacaatttttaagattagtggctaaaagctc-tttatataaaaat
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59629941 161 + 162156779 agaaGTATTTACTGTATTTTCCCATGATGTCATAgtctttatagaaaaataacaatCATTATTTTCAGTTGACGTGATTGTTTACCTAAAAATATCCAAAGGAACTaactg-aaaaaaacaatttttaagattACTGGTTAAAAgctcttttatataaaaat
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21052850 157 -  24206276 AAAAGTATTTACTGTATTTTACCATGATGTCATAGTGTTTACagaaaa--aaaaatcattattttcagttgacatgattgtttacctgaaaatatccaaaggaaccaactg--aaaaaacaatttttaagattagtggctaaaagctc-tttatataaaaat
i chlSab2.chr29                 C 0 I 298
s calJac3.chrY                     191993 157 -   2853901 aaaaaaaattattgtattttcccataacataa-agtctttatagaaaaataaccatcattattttcagctgacatgattgtttacctaaacatattcagaggaaccaattc----aaaaaagtttttaagattaccagttaaaagctctgttacataaaaat
i calJac3.chrY                  I 4365 C 0
e mm10.chr9                      55158336 6645 + 124595110 I
e canFam3.chr30                     36339  51 -  40214260 I

a score=788663.000000
s hg38.chr15_KI270850v1_alt        175304 266 +    430880 caatagccttccccaatgttagctataatcacatagaacatatagtgatgaagtat---------tttttcaggtatttcagcaaaaattaaatacctaggaataaacttagatgtgcagggcttttatcaaggacatgacaaaattttgctgagaggaatgaaagatttgcattctatgttcctgaatgagcagatttcatgttataaatat----gttatcaccatgtcttcatattaatttataaatgtaatTTCTgctgggcacagtggctcata
s panTro4.chr15_GL392289_random    173227 270 -    187897 caatagccttccccaatgttagctataatcacatagaagatatagtgatgaagtat---------tttttcaggtatttcagcaaaaattaaatacctaggaataaacttagatgtgcaggacttttatcaaggacaggacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaccaTGTCTTCATATTAATTTGTAAATGTAATTTCTgctgggcacagtggctcata
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10035567 270 +  10928107 caatagccttccctaatgttagctataatcatataaaagatatagtgatgaagtat---------tttttcaggtatttcagcaaaaattaaatacctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagtagaacgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaccaTGTCTTCATATTAATTTATAAATGTAATTTCTgctgggcacagtggctcata
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102128189 267 + 121039945 caatagccttccccaatgttagctataatcacatagaagatataatgatgaagtat---------tttttcaggtatttcagcaaaaattaaatacctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagaggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatacgttagttatcaccaTGTCTTCATAT---TTTATAAATGTAATTTCTgctgggcacggtggctcata
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106596985 279 - 170124641 caatatccttccccaatgctagctataatcacatagaagatatagtggtgcagtattttttcaggtttttcaggtgtttcagcaaaaattaaatatctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagtgaaatgaaacatttgcattctatgttcctggatgagcagatttcatgctataaatatgTTAGTTATCACCATGTCTTCATATTAATTTATAAATGTAATTTCTGCTGGGCACAGTGGCTCATA
i rheMac3.chr7                  C 0 M 255
s macFas5.chr7                  107335024 279 - 171882078 caatatccttccccaatgctagctataatcacatagaagatatagtggtgcagtattttttcaggtttttcaggtgtttcagcaaaaattaaatatctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagtgaaatgaaaCATTTGCATTCTATGTTCCTGGATGAGCAGATTTCATGCTATAAATATGTTAGTTATCACCATGTCTTCATATTAATTTATAAATGTAATTTCTgctgggcacagtggctcata
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59630102 270 + 162156779 cattagCCTTCCCCAATGTTGGCTATAATCACATAGAAGATATAGTGATgaagtat---------tttttcatgtatttcagcaaaaattaaatatctaggaataaacttaGATGTGCAGGACTTTTATCAAGGACATGACAAAATTTTGCTGAGTGGAATGAAAGATTTGCATTCTATGTTCCTGGATGAGCAGATTTCATGTTATAAATATGTTAGTTATCAACATGTCttcatattaatttataaatgtaatttctgctgggcacagtggctcata
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21053305 279 -  24206276 caatatccttccccaatgctagctataatcacatagaagatatagtgatgcagtattttttcaggtttttcaggtgtttcagcaaaaattaaatatctaggaataaacttagatgtgcaggacttttatcaaggacatgacaaaattttgctgagtgaaatgaaagatttgcattctatgttcctggatgaacagatttcatgctataaatatgtcagttatcaccatgtcttcatattaatttataaatgtaatTTCTgctgggcacagtggttcata
i chlSab2.chr29                 I 298 C 0
s calJac3.chrY                     192150 265 -   2853901 cagcagcattcaacaattttagctgtaatcacacagaagataaagggataaagtatt--------tttttcaagtattttaacaaaaattacatacctaggaataaacttagatgtgcaggacttttgtcaagaacatgac--aatttttctgagtggaatgaaagaTTTGTATTCTGTGTTCCTGGATGAGCAGATTTAATTATATAAATATGTCAGTTATCACCGTGTCTTTATA----TTCATAAATGTAATTTCTgctgggtgcggtggctcatg
i calJac3.chrY                  C 0 C 0
e mm10.chr9                      55158336 6645 + 124595110 I
e canFam3.chr30                     36339  51 -  40214260 I

a score=443111.000000
s hg38.chr15_KI270850v1_alt        175570 249 +    430880 cctgtaatctgaacagtttgggaagctgaagtgggtagatgac--------------------------------------------------------------aattagctgggtgtctgtggcacacacttg---ttccaactacttctgaggccgaggtgggaggatcacttgagcctgggaggcagaggttgcagtgagccgagatc-tgcctctgaactccagcctaggtgacagaataagaccctgtctcaaaaaaaaaaaaaaaaaCAC--ACAGGAAAAAAAAGGGTGtatatatatacacattttat
s panTro4.chr15_GL392289_random    173497 247 -    187897 cctgtaatccaaacagtttgggaagctgaggcgggtagatgac--------------------------------------------------------------aattagctgggtgtctgtggcacacacatgtatttccaactactcctgaggctgaggtgggaggagcacttgagcctgggaggcagaggttgcagtgagccgagatcatgcctgtgaactccagcctaggtgacagagtgagaccctgtctcaaaaaaaaaaaaaaaagaa--------aGAAAAATGTGTGTGtatatacatatatttcat
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10035837 251 +  10928107 cctgtaatcccaaaagtttgggaatctgaggcaggtagatgac--------------------------------------------------------------aattagctgggtatctgtggcacataattgtagttccaactactcctgaggctgaggcaggaggatcacttgagcctgggaggcagaggttgcagtgagctgagatcatgcctctgaactccagcctaggtgacagagtgagaccctgtctccaaaaacaaaaaacaaaaa---acaa-aaaaAAGTGTGCatatatatatatactttttat
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102128456 255 + 121039945 cgtgttatccgaagagtttgggaagctgaggagggtagatgac--------------------------------------------------------------aattaactgggtgtctgtggcacacacttgtagttccaaccactcctgaggctaaggcgggaggatcccttgagcctgggaggcagaggttgcagtgagccgagatcattcctctgaactccagcctaggtgacagagtaagaccctgtctcaaaaaaaaaaaaaaaaaaaaagaaaagaaaaaaaaGCGTGTGtatatatacacattttat
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107335303 245 - 171882078 cctgtaatcccaaaagtttgggaagctgaggtgagtagatgac--------------------------------------------------------------aattagctgggtgtctgtggcacacacttgtagttccaactactcctgaggctgaggcaggaggatcacatgagcctgggaggcagaggttgcagtgagccgagatcatgcctctgaactccagcctaggtgacagagtgagaccgtgtctcaaaaaaaaaaaaaaaaa----------aaagagaaaaaaaAGTGTGTGtatatattttat
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59630372 245 + 162156779 cctgtaatcccgaaagtttgggaagctgaggtgagtagatgac--------------------------------------------------------------aattagctgggtgtctgtggcacacacctatagttccaactactcctgaggttgaggtaggaggatcacttgagcctggaaggcagaggttgcagtgagccgagagcatgcctctgaactccagcctacatgacagagtgagatcctgtctcaaaaaaaaaaaaaaaaa----------aagtgtgtgtgtgtgtgtatatatattttttat
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21053584 248 -  24206276 cctgtaatcccaaaagtttgggaagctgaggtgagtagaCGAC--------------------------------------------------------------aattagctgggtgtctgtggcacacacttgtagttccaactactcctgaggctgaggcaggaggatcacatgagcctgggaggcagaggttgcagtgagctgagatcatgcctctgaactccagcctaggtgacagagtgacaccgtgtctcaaaaaaaaaaaaaaaaaaaC-------AAGAGAGAGGAAAAAAGTGTGtatatattttat
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     192415 291 -   2853901 cccgtaattccagaactttggaaagctgaggtcggcaggtcacttgagctcatgagttcaagaccagtctgggcaacatggtgaaaccctgtctcaaaaaaaaaaaaagagctgggtgt-ggtggcacatacttgtaatcccagctactcaggaggctgaggttcaaggatcacttgagcctgagaggcagagcttccagtaagtctagattgtgcctctgaactccagcctaggtgacagagtgagaccttgtctcaaaaaaaacccaaaaagca--------aaaaaC---------CATATATATA--------
i calJac3.chrY                  C 0 C 0
e mm10.chr9                      55158336 6645 + 124595110 I
e canFam3.chr30                     36339  51 -  40214260 I
e rheMac3.chr7                  106597264 255 - 170124641 M

a score=-9603.000000
s hg38.chr15_KI270850v1_alt        175819 31 +    430880 attt-----catatatatattta-tatataaatt------------------t---------------------tg
s panTro4.chr15_GL392289_random    173744 49 -    187897 attt-----tataaatatttata-tatataaattatatatatacattttatat---------------------tt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036088 70 +  10928107 attt-----tatatatatttata-tatataaattgaatatatatgtgatatgtatatgtatatgtatatgtatgtg
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102128711 33 + 121039945 atttta---tatatatatttata-tatataaatt------------------t---------------------tg
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107335548 16 - 171882078 at--------------------a-tatatacatt------------------t---------------------tg
i macFas5.chr7                  C 0 I 10
s papAnu2.chr7                   59630617 29 + 162156779 attt-----tatatctatt--ca-tatatacata------------------t---------------------tg
i papAnu2.chr7                  C 0 I 6
s chlSab2.chr29                  21053832 16 -  24206276 at--------------------a-tatatatatt------------------t---------------------tg
i chlSab2.chr29                 C 0 C 0
s canFam3.chr30                     36390 32 -  40214260 attccatattataaatatgtctattatctcca--------------------------------------------
i canFam3.chr30                 I 51 C 0
e mm10.chr9                      55158336 6645 + 124595110 I
e calJac3.chrY                     192706  0 -   2853901 C
e rheMac3.chr7                  106597264 255 - 170124641 M

a score=32273.000000
s hg38.chr15_KI270850v1_alt        175850 36 +    430880 ----tatatata------tgtatatat------------------------------------aCA-----aatttcagtagaaatt
s panTro4.chr15_GL392289_random    173793 55 -    187897 ----tatatata-gtgtgtgtatatata----------------------tataCACACACACACA-----aatttcagtacaaatt
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036158 78 +  10928107 ----tatatatgtgtgtgtgtatatatatatatatatatatatatatatgtatacacataCACACA-----aatttcagtacaaatt
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102128744 36 + 121039945 ----tatgtatg------tgtatatat------------------------------------aCA-----aatctcagtagaaatt
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106597528 36 - 170124641 ----tatatata------tatatatat------------------------------------aCA-----aatttcagtacaaatt
i rheMac3.chr7                  M 255 C 0
s macFas5.chr7                  107335574 36 - 171882078 ----tgtatata------tatatatat------------------------------------aCA-----aatttcagtacaaatt
i macFas5.chr7                  I 10 C 0
s papAnu2.chr7                   59630652 37 + 162156779 ----tgtatata------tatatatac------------------------------------acacacacaatt----tacaAATT
i papAnu2.chr7                  I 6 C 0
s chlSab2.chr29                  21053848 32 -  24206276 --------tgta------tatatatat------------------------------------aCA-----aatttcagtacaaatt
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     192706 21 -   2853901 -------------------------------------------------------------AAATA-----AATTTCAGTACAAAGC
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     36422 48 -  40214260 tagctttatgtt------aatagaaat-----------------------tgaatgca-----att-----aattcccctaaaaatc
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55158336 6645 + 124595110 I

a score=1092867.000000
s hg38.chr15_KI270850v1_alt        175886 350 +    430880 ccagcagatttatttttggcatttgacaaaatgactctaaaat--------------------------ttgtttagaagagtaaaTAATAAAAATTAAT------AAAGTATAGACTCT-TTCAACCAG-ATATTAAAT-AAAATATTGTGGACTAGCCCTGGGCCAGACAGATAAAGGCAATGAAAGTTTAGAACCAGAGTCATGCAAATGAGAATTTAGTGTAAGGAAAAGGTGGTGCTTTAACTTAGTAGTGAA---AAGACAGA-TTATTCTGTAAATAGTTTTAGGAGAACTGGCCATTTGAGGAAGTTTGAGTC-TTAACTCCAATTTTTGTCAAAATAAGTTGTAGTTGGTTTAAACACATCTATTCTTAAAAATTAGAACA
s panTro4.chr15_GL392289_random    173848 345 -    187897 ctggcagatttatttttgacacttgacaaaacgactctaaaat--------------------------ttgtttagaaGaataaataataaaaattaat------aaaGTATAGACTCT-TTCAACCAG-ATAGT-AGT-AAAATATTGTGGACTATTCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAACGAGAATTTAGTATAAGGAAAAGGTGGTATTTTAACTTAATACTGAA---AAGATAGA-TTATTCTGTAAATGGTTTTAGGAGAACT----ATTTGAGGAAGTCTGAGTC-TTAACTCCAATTTTTGTCAAAATAAGTTACAGTTGGTTTAAACACATCTATTCTTAAAAATTAGAACA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036236 341 +  10928107 ccagcagatttatttttggcacttgacaaaacgactctaaagt--------------------------ttgtttagaagagtaaaT----AAAAATAAT------AAAATATAGACTCT-TTCAACCAG-atagtaaat-aaaatattgtggactagccctgggtcagacagataaaggcaatggaagtttagaaccagagtcatgcaaataagaatttagtataaggaaaaggtggtattttaacttaatactgaa---aaaataga-ttattctgtaaatggttttaggagaact----atttgaggaagtttgagtc-ttaactccAATTTTTATCAAAATAAGTTG-AGTTGGTTTAAACACATCTATTCTTAAAAAGCAGAACA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102128780 347 + 121039945 ccagcagatttatttttggcacttgccaaaatgactctaaaat-----------------------------tttagaagagtaaataataaaaaataat------aaagTATAGACTCT-TTCAATCAG-ATATTAAAT-AAAATATTGTGGACTAGCCCTGGGTCAGACAGATAAAGGCAATGGAAGTTTAAAGCCAGAGTCATGCAAATGAGAATTTAGTATAAGGAAAAGGTGGTATTTTAACTTAATAGTGAA---AAGACAGA-TTATTCTGTAAATAGTTTTAGGAGAACTGGCCATTTGAGGAAGTTTGAGTC-TTAACTTCAATTTTCGTCAAAATAAGTTGTAATTGGTTTAAACACATCTATTCTTAAAAATTAGAACA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106597564 354 - 170124641 ccagcagatttatttttggcacttgacaaaacaattctaaaat--------------------------ttgtttagaagagtaaataataaaaaataat------caagTATAGACTCT-TTCAACCAG-ATATTAAAT-AAAATATTGTAGACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAAAGAGAATTTAGTATAAGGAAAAGATGGTATTTTAACTTATTTGTCAAAATAAGTTAGAGTTGGTTTAAACACAGTTTTAGGAGAACTGGCCATTTGTGGAAGTTTGAGTC-TTAACTTCAGTTTTTGTCAAAATAAGTTATAGTTAGTTTAAACACATCTATTCTTAAATATTAGAAGA
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107335610 350 - 171882078 ccagcagatttatttttggcacttgacaaaacaattctaaaat--------------------------ttgtttagaagagtaaataataaaaaataat------caagTATAGACTCT-TTCAACCAG-ATATTAAAT-AAAATATTGTAGACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAATTTAATATAAGGAAAAGGTGATATTTTACCTTCATAGTGAA---AAGATAGA-TTATTCTGTAAATAGTTTTAGGAGAACTGGCCATTTGTGGAAGTTTGAGTC-TTAACTTCAGTTTTTGTCAAAATAAGTTATAGTTAGTTTAAACACATCTATTCTTAAATATTAGAAGA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59630689 350 + 162156779 CCAGCAGATTTATTTTTGGCACTTGACAAAATGACTCTAAAGT--------------------------TTGTTTAGaagagtaaataataaaaaataat------aaagtatagaCTCT-TTCAATcag-atattaaat-aaaacattgtagACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAATTTAGTGTAAGGAAAAGGTGGTATTTTAACTTAACAGTGAA---AGGATAGA-TTATTCTGTAAATAGTTTTATGAGAACTGACCATCTGAGAAAGTTTGAGTC-TTAACTCCAATTTTTGTCAAAATAAGTTATAGTTGGTTTAAACACATCTATACTTAAAAATTAGAACA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21053880 350 -  24206276 ccagcagatttatttttggcacttgacaaaacaattctaaaat--------------------------ttgtttagaagagtaaataataaaaaataat------caagTATAGACTCT-TTCAACCAG-ATATTAAAT-AAAATATTGTAGACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAATCATGCAAATGAGAATTTAATATAAGGAAAAGGTGATATTTTACCTTCATAGTGAA---AAGATAGA-TTATTCTGTAAATAGTTTTAGGAGAACTGGCCATTTGTGGAAGTTTGAGTC-TTAACTTCAGTTTTTGTCAAAATAAGTTATAGTTAGTTTAAACACATCTATTCTTAAAAATTAGAAGA
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     192727 339 -   2853901 TTAGCAGATTTACTTCTGGAACTTGACAAAGTGACTTGAACGT--------------------------TTGTTTAAAAGAGTAAATAATAAAAAATAAT------CAAGAATATACTTG-TTCAACCAG-GTATT------AAATGTTGTGTAC----CCTGGCCCAGACATATTCAGGCAATGAAAATGTAGAAACAGAGTCATACAAATAAGAATTTAGTATAAGGTAAAGGTGGTATTTTAACTCAACAAGAAA---AGGATACA-TTATTCTGTGAATAGTCTTAGGAGAACCGACTGTTTGAGGATGTTTGAGTC---AACTCTGATTTTTGTCAAAATAAGTTGCAGTTGGTTTAAACACATCTAGTTTTAAAAATAAGAACA
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55164981 316 + 124595110 CCATCATATTTGTTTCTGGTA-TTGTCAGAATGACTCAAGAAT---------------------------------AAGTAATAAAATACAAAAGTTTAA------AAGGTAAAAAATTTGCCCAAACAGTAAATGAAAT-AAAATATTAACTATTAGAACTAGACCA-------ACAGGCAATAGAAATTTAGAAACAG--CCATGCAAATGACAATTTAGAATAA-GTAAAGCTGGCGTTTTAACCCA-----GGA---AGGAAGAA-TCTTTCTATAGATAATTTT---AGAACTGGCCATTTTGGGAACTTAGACTCTTTAGCTCTTTGTCTTGTCAAGGTAAA-------TGGTTTAAACA----TGTTCTTAAAATTAAGAACA
i mm10.chr9                     I 6645 I 136
s canFam3.chr30                     36470 332 -  40214260 ccaacagtcttatttttggaacttgacaaaatgagtctaaagcttgtTTTTTTTTTTTTTTTAAAAAGCTTGTTTTAAAGAGtaaataattaaaaaaaattaaaaCTAAGGAGAGACTTG-TCCAATTAG-ATATTAAATAAAAATATTACGTACTGGCGTTGGACTGGACAGAT--AGACAAT---AGTTTAGA--CACAGTCATGCAATTGAGAATTCAGAGTAAGTTAAA-----------------ACACTCAA---AGAAACAC-TTA----------------AGGATA-----------GGGGAAGTTAGAATC-TTACCTCAGATTCTTGTCAAAATAAGTGATGGGTGGCTTAAACACATCTATTCCTAAAATTAACAGCA
i canFam3.chr30                 C 0 C 0

a score=8595.000000
s hg38.chr15_KI270850v1_alt        176236 2 +    430880 GA
s panTro4.chr15_GL392289_random    174193 2 -    187897 GA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036577 2 +  10928107 GA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129127 2 + 121039945 GA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106597918 2 - 170124641 GA
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107335960 2 - 171882078 GA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59631039 2 + 162156779 GA
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21054230 2 -  24206276 GA
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     193066 2 -   2853901 GA
i calJac3.chrY                  C 0 I 290
s canFam3.chr30                     36802 2 -  40214260 GA
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55165297 136 + 124595110 I

a score=27663.000000
s hg38.chr15_KI270850v1_alt        176238 14 +    430880 AGAACATCGATTTG
s panTro4.chr15_GL392289_random    174195 14 -    187897 AGAATATTGGTTTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036579 14 +  10928107 AGAACATCGGTTTG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129129 14 + 121039945 AGAACATCGGTCTG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106597920 14 - 170124641 AGAACTTCAGTTGG
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107335962 14 - 171882078 AGAACTTCAGTTGG
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59631041 14 + 162156779 AGAACATCAGTTTG
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21054232 14 -  24206276 AGAACTTCAGTTCG
i chlSab2.chr29                 C 0 C 0
s canFam3.chr30                     36804 13 -  40214260 AGAA-ATCAGTTGA
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55165297 136 + 124595110 I
e calJac3.chrY                     193068 290 -   2853901 I

a score=81391.000000
s hg38.chr15_KI270850v1_alt        176252 24 +    430880 AAGATATTTTAAGAGTTAAGGCTG
s panTro4.chr15_GL392289_random    174209 24 -    187897 AAGATATTTTAAGAGTTAAGGCTG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036593 24 +  10928107 AAGATATTCTACGAGTTAAGGCTG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129143 24 + 121039945 AAGATATTTTAAGAGTTAAGGCTG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106597934 24 - 170124641 ACGATATTTTAAGAGTTAAGGCTG
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107335976 24 - 171882078 ACGATATTTTAAGAGTTAAGGCTA
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59631055 24 + 162156779 AAGATATTTTAAGAGTTAagcctg
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21054246 24 -  24206276 ACGATATTTTAAGAGTTAAGGCTG
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     193358 24 -   2853901 aaGACACTTTAAGAGTTAAGGCTG
i calJac3.chrY                  I 290 C 0
s canFam3.chr30                     36817 24 -  40214260 AGAGTATTTTAAGAGTAGAGACTG
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55165297 136 + 124595110 I

a score=115606.000000
s hg38.chr15_KI270850v1_alt        176276 41 +    430880 Aggctgggcacagtggttcacgcctgtaatcccagcacttt
s panTro4.chr15_GL392289_random    174233 41 -    187897 Aggctgggcacagtggttcacgcctgtaatcccagcacttt
i panTro4.chr15_GL392289_random C 0 I 1
s ponAbe2.chr15_random           10036617 40 +  10928107 Aggctgggcacggtggatcccg-ctgtaatcccagcacttt
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129167 41 + 121039945 Aggctgggcacagtgattcacacttgtaatcccagcagttt
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106597958 41 - 170124641 Aggctgggcacagtggttcatgcctgtaatcccaggacttt
i rheMac3.chr7                  C 0 I 122
s macFas5.chr7                  107336000 41 - 171882078 Aggctgggcacagtggttcatgcctgtaatcccaggacttt
i macFas5.chr7                  C 0 I 1
s papAnu2.chr7                   59631079 41 + 162156779 aggctgggcacagtggttcatgcctgtaatctcagcacttt
i papAnu2.chr7                  C 0 I 1
s chlSab2.chr29                  21054270 41 -  24206276 Aggctgggcacagtggttcatgcctgtaatcccagcacttt
i chlSab2.chr29                 C 0 I 1
s calJac3.chrY                     193382 41 -   2853901 Aggctggctgcagtggttcacgcctataatcccagcatttt
i calJac3.chrY                  C 0 C 0
e mm10.chr9                      55165297 136 + 124595110 I
e canFam3.chr30                     36841  0 -  40214260 C

a score=121202.000000
s hg38.chr15_KI270850v1_alt        176317 54 +    430880 -caaggccaagttgggaggattgcttgagcccaggagtttgagatcagcctgggc
s panTro4.chr15_GL392289_random    174275 54 -    187897 -cgaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgagc
i panTro4.chr15_GL392289_random I 1 C 0
s ponAbe2.chr15_random           10036657 54 +  10928107 -caaggccagggtgggaggattgcttgagcccaggagtttgagatcagcctgggc
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129208 54 + 121039945 -caaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggc
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107336042 54 - 171882078 -tgaggccaagatgggaggattgcttgagcccaggagtttgagatcagcctgagc
i macFas5.chr7                  I 1 C 0
s papAnu2.chr7                   59631121 54 + 162156779 -caaggccaaggtggaaggattgcttgagtccaggagtttgagatcagcctgagc
i papAnu2.chr7                  I 1 C 0
s chlSab2.chr29                  21054312 54 -  24206276 -cgaggccaagatgggaggattgcttgagcccaggagttcgagatcagcctgagc
i chlSab2.chr29                 I 1 C 0
s calJac3.chrY                     193423 54 -   2853901 gggagactaaagtgggagaaatgcctgagcctaggagtttgagattagcctgag-
i calJac3.chrY                  C 0 C 0
e mm10.chr9                      55165297 136 + 124595110 I
e canFam3.chr30                     36841  0 -  40214260 C
e rheMac3.chr7                  106597999 122 - 170124641 I

a score=32990.000000
s hg38.chr15_KI270850v1_alt        176371 18 +    430880 aacatagcaaga----------ctctct
s panTro4.chr15_GL392289_random    174329 28 -    187897 aacatagcaagactctttctctctctct
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036711 24 +  10928107 aacacagcaaga----ctctctctctCT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129262 22 + 121039945 aacatagcaaga------ctctctctct
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107336096 18 - 171882078 aacatagcaaga----------ctctct
i macFas5.chr7                  C 0 I 4
s papAnu2.chr7                   59631175 18 + 162156779 aatatagcaggA----------CTctct
i papAnu2.chr7                  C 0 I 37
s chlSab2.chr29                  21054366 18 -  24206276 aacatagcaaga----------ctctct
i chlSab2.chr29                 C 0 I 10
s calJac3.chrY                     193477 18 -   2853901 aatgcagcaaat----------ctctct
i calJac3.chrY                  C 0 I 78
s mm10.chr9                      55165433 18 + 124595110 cacatgGCATCC----------CTCGCT
i mm10.chr9                     I 136 C 0
e canFam3.chr30                     36841  0 -  40214260 C
e rheMac3.chr7                  106597999 122 - 170124641 I

a score=13855.000000
s hg38.chr15_KI270850v1_alt        176389 10 +    430880 ctctCtagat--
s panTro4.chr15_GL392289_random    174357 10 -    187897 ctctctcGat--
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036735 10 +  10928107 CTCTCTCGat--
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129284 10 + 121039945 CTCTCtagat--
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107336118 10 - 171882078 CTCTCTAGat--
i macFas5.chr7                  I 4 C 0
s chlSab2.chr29                  21054394 10 -  24206276 CTCTCtagat--
i chlSab2.chr29                 I 10 C 0
s calJac3.chrY                     193573 10 -   2853901 ctctctTTAT--
i calJac3.chrY                  I 78 I 4
s mm10.chr9                      55165451 10 + 124595110 --CTCCCAACCT
i mm10.chr9                     C 0 C 0
e canFam3.chr30                     36841  0 -  40214260 C
e papAnu2.chr7                   59631193 37 + 162156779 I
e rheMac3.chr7                  106597999 122 - 170124641 I

a score=46669.000000
s hg38.chr15_KI270850v1_alt        176399 27 +    430880 --atagatatacatataaatatacatata----
s panTro4.chr15_GL392289_random    174367 27 -    187897 --atagatatacatataaatatacatata----
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036745 27 +  10928107 --atagatatacatataaatacacatata----
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129294 27 + 121039945 --atagatatacatataaatacacatata----
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107336128 27 - 171882078 --atagatatacatataaatatacatata----
i macFas5.chr7                  C 0 I 6
s papAnu2.chr7                   59631230 26 + 162156779 --atagatatacatat-aatatacatata----
i papAnu2.chr7                  I 37 M 1358
s chlSab2.chr29                  21054404 27 -  24206276 --atagatatacatataaatatacatata----
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     193587 27 -   2853901 --acacacacacgtatatttatttatgta----
i calJac3.chrY                  I 4 I 14
s mm10.chr9                      55165461 31 + 124595110 CCATAAGTGTAAAGA--AGTTCTAAAACAATGA
i mm10.chr9                     C 0 C 0
e canFam3.chr30                     36841  0 -  40214260 C
e rheMac3.chr7                  106597999 122 - 170124641 I

a score=-2667.000000
s hg38.chr15_KI270850v1_alt        176426  9 +    430880 gagatac--aA
s panTro4.chr15_GL392289_random    174394 11 -    187897 caaataGAAAA
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036772  9 +  10928107 cagatac--aA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129321  9 + 121039945 cagatac--aA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107336161  8 - 171882078 caAGTAC--A-
i macFas5.chr7                  I 6 C 0
s chlSab2.chr29                  21054431  8 -  24206276 ctagtac--a-
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     193628  6 -   2853901 caAATA-----
i calJac3.chrY                  I 14 C 0
s mm10.chr9                      55165492  9 + 124595110 AGAATAT--AA
i mm10.chr9                     C 0 C 0
e canFam3.chr30                     36841  0 -  40214260 C
e papAnu2.chr7                   59631256 1358 + 162156779 M
e rheMac3.chr7                  106597999 122 - 170124641 I

a score=34299.000000
s hg38.chr15_KI270850v1_alt        176435 17 +    430880 --------------AAAAAG--AGTTAAGTTTT
s panTro4.chr15_GL392289_random    174405 17 -    187897 --------------AAAAAG--AGTTAAGTTTT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036781 17 +  10928107 --------------AAAAAG--AGTTAAGTTTT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129330 17 + 121039945 --------------AAAAAG--AGTTAAGTTTT
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106598121 17 - 170124641 --------------AAAAAG--AGTTAAGGTTT
i rheMac3.chr7                  I 122 C 0
s macFas5.chr7                  107336169 17 - 171882078 --------------AAAAAG--AGTTAAGGTTT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  21054439 17 -  24206276 --------------AAAAAG--AGTTAAGGTTT
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     193634 19 -   2853901 --------------AAAGAGTTAGTTAAGATTT
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55165501 30 + 124595110 GTTTCAAAAGTTTGTAAAAG--AGTCCAGATC-
i mm10.chr9                     C 0 C 0
e canFam3.chr30                     36841  0 -  40214260 C
e papAnu2.chr7                   59631256 1358 + 162156779 M

a score=260430.000000
s hg38.chr15_KI270850v1_alt        176452 95 +    430880 GTATGGAGAGCCATGAAGATAAGAGGTGAAAATTAAAGGCTTGATGGACACATGTTTACATCTCCAGCAAGGGGG-TTGATGGGAAAGACTGATAG
s panTro4.chr15_GL392289_random    174422 95 -    187897 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAAAGGCTTGATGGACACATGTTTACATCTCCAGCAAGGGGG-TTGATGGGAAAGACTGATAG
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036798 90 +  10928107 GTATGGAGAGCAATGAAGATAAGAGGTAAAAATTAAAGGCTTGATGGACACATGTTTACATCTCCAGCAAGGGGG-TTGATGGAA-----TGATAG
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129347 94 + 121039945 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAAAGGCTTGATGGACACATGTTTACATCTCCAGCAAGGGGA-TTGATGGAA-AGAATGATAG
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106598138 95 - 170124641 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAAAGGTTTGATGAACACATGTTTACATCTCCAGCAGGGGGG-TTGATGGGAAAGAATGATAG
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107336186 95 - 171882078 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAAAGGTTTGATGAACACATGTTTACATCTCCAGCAGGGGGG-TTGATGGGAAAGAATGATAG
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  21054456 95 -  24206276 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAAAGGTTTGATGGACACATGTTTACATCTCCAGCAAGGGGG-TTGATGGGAAAGAATGATAG
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     193653 95 -   2853901 GTATGGAGAGCCATGAAGGTAAGAGGTAAAAATTAAAAGCTAGATGGATGAATGTTCACATATCCAACAAGGGGG-TTCATGGGAAAGAATGATAG
i calJac3.chrY                  C 0 I 19360
s mm10.chr9                      55165531 85 + 124595110 ---TTAAGAGCCATGAAACTCGGAGT----AATTAAAC-CCAGACAGGTACATGTTT-CATTTTCAGCAGACTGG--TGATGGGAAAGACAGACAG
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     36841 94 -  40214260 GTCCTGAGAGGCAGGAAGGATAGAGGTAAAAGTAAAAAGCTAGACAGACATACGTTTGCATCTCCAGCAGGAGAGAGTGACAGGACAGGGAAAT--
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                   59631256 1358 + 162156779 M

a score=1870909.000000
s hg38.chr15_KI270850v1_alt        176547 789 +    430880 AC----ATAGCTCCATTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAA---------------------------------TA--TCTAAAGATAA-------------------------CAGTTTTAT-AATAG---------------CAGAAATGAGG-----------------------------------------TTTTTTTCAGTGTCT-----------------------AAAacattacatgaaata------------catacatacataAACATGTTCA-AAAGTTAAATGAAGTAGGATATAAAATTGGGCC------TAGTGTTTAAAACAATAAATATATTTACATGAAGGAGAAA-A--CAActcacttcccactct----tacagcctctgccagtt-tatcatagcctagtttcttgagagaataagct--acatgtcttcaccttt-tttcactgaactcattataatctggattctgccttc-atctttgcgctaaaa----------------------------tttatctcctcgtttccaaatccagtggctcccctcttagtccacaaattgactcctctgcagtattttgttaatgttgattgttcctttgttgaaacattCCTCCGTT----------------cttaatgtccaccagcaaagagttggttaaataaaaattatagtgtacagttttataatagaata--------ttctgttatag-acc-aaaaaaaatgcagccagtc--tttccataaaagcatgtgcaaacttctaagatgtattaagtaaaaaagtaaggcataaaatattgtgtataatctgACCTCTTTAGTATACAGTGT-AAAAAAATCTATGTCTGTGCTAGTTTA----TACTTACTTTTTTCTCCCCTGGTGGATACAGGAAATTGTGAGTAGTA-----GAACACAATT---AAAAAA--------------GACTGTGTGGCTTCtgtgccaggacctgtgatag---ttgg---gtataaaagac
s panTro4.chr15_GL392289_random    174517 802 -    187897 AC----ATAGCTCCATTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAA---------------------------------CA--TCTAAAGATAT-------------------------CAGTTTTAT-AAT------------------AGAAATGAGT-----------------------------------------TATTTTTCAGTGTCT-----------------------AAAACATCACATGAGatacatacatacatgcatacatacataaataTGTTTATAAAGTTAAATGAAATAGGATATAAAATTGGGCC------TAGTGTTTAAAA-GGTAAATATATTTACATGAAGGAGAAA-A--CAACTCACCTCCCACTCT----TAGAGCCTCTGCCAGTT-TATCATAGCCTAGTTTCTTGAGAGAATAAGCT--ACATGTCTTCACCTTT-TTTCACTGAGCTCATTATAATCTGGATTCTGCCTTC-ATCGTTGCACTAAAA----------------------------TTTatctcctagttgtcaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattttgatactgttga----tcctttgttgaaacattcctccatt----------------cttaatgtccaccaataaagagttggttaaataaaaattatagtgtaccgttttataatagaatattctgttgttctgttgtgg-acc---aaaaaatgcagccagtc--tttccataagagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtgtataatctgACCCCTTTAGTACACAGTGT-AAAAACATCTGTGTCTGTGCTTCTTTA----TACTTACTTTTTTCTCCCCTGGTGAATACAGGAAACTGTGAATAGTA-----CAACACAATTAAAAAAAAA--------------AACTGTGTGTCTGCTGCACCAGGACCTGTGATAA---TTGG---GTATAAAAGA-
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10036888 796 +  10928107 AC----ATAGCTCCATTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAA---------------------------------CA--TCTAAAGATAA-------------------------CAGTTTTAT-AATAG---------------CAGAAATGAGG-----------------------------------------TTTTTTTCAGTGTCT-----------------------AAAACATTACATGACATA------------CATACATACATAAACATGTTCA-AAAGTTAAATGAAGTAGGATATAAAATTGGGCC------TAGTGTTTAAAAAAGTAAATATATTTACATGAAGGAGAAA-A--Catctcacctcccactct----tacagcctctgccagtt-tatcatagcctagttccttgagagaataagct--acatgtcttcaccttt-tttcactgagctcattataatctggattctgccttc-atcgttgtgctaaaa----------------------------tttatctcctagttgccaaattcagtggctccccttttagtccccaaactgacccctctccagtattttgatattgttgattgttcccttgttgaagcattcctccgtt----------------cttaatgtccaCcagtaaagagctggttaaataaaaattatagtgtacagttttataatagaatattctgttgttctgttgtgg-acc--aaaaaaatgcagccagtc--tttccataagagcgtgtggaaacttctaagacatattaagtaaaaaagtaaggcataaaatattgtgtataatctgacccctttagtatacagtgtaaaaaaaatctatgtgtgtgcttcttta----tATTTACTTTTTTCTCCCCTGGTGGATACAGGAAACTGTGAATAGTA-----GAACACAATT----AAAAA--------------AACTGTGTGTCTTCTGCACCAGGACCTGTGATAA---TTGG---GTATAAAAGAC
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102129441 787 + 121039945 AC----GTAGCTCCATTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAA---------------------------------TA--TCTAAAGATAA-------------------------CAGTTTTAT-AATAG---------------CAGAAATGAGG-----------------------------------------TTTTTTTCAGTGTCT-----------------------AAAacattacataacata------------catacatacataaacataTTCA-AAAGTTAAATGAAGCAGGATATAAAATTGGGCC------TAGTGTTTAAAAAAGTAAATATATTTACATGAAGGAGAAA-A--CAActcacctcccactct----tacagcctctgccagtt-tatcatagcctagtttcttgagagaataagct--acatgtcttcaccttt-tttcactgagctcattataatctggattctgccttc-atcattgtgctaaaa----------------------------tttatctcctagttgccaaatccagtgacttccctcttagtccccaaattgac-cctctgcagtattttgatattgttgattgttcccttcttgaaacattcctccatt----------------cttaatgtccaccagtaaagagttggttaaataaaaattatagtgtacagttttataatagaata--------ttctgttgtag-acc-aaaaaaaatgcagccagtc--tttccataaaagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtatataatctgacccctttagtatacagtgt-aaaaaaatctatgtctgtgctagttta----tacttgcTTTTTTCTCCCC-GGTGGATATAGGAAACTGTGAATGGTA-----GAACACAATT---AAAAAA--------------GACTGTGTGGCTTCTGTGCCAGGACCTGTGGTAA---TTGG---GTATAAAAGAC
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106598233 791 - 170124641 AC----ATAGCTCCATTACTGCTACCTCCGTTTAGGGAGCTGCTTCTGAG---------------------------------CA--TCTAAAGATAA-------------------------CAGTTTTAT-AAGAG---------------CAGAAATGAGT-----------------------------------------TATTTTTCAGTGTCT-----------------------AAAACATTATATAacatacata--------catacatacataAACATGTTCATAAAGTTAAATGAAGTAGGATATAAAATTGGGCC------TAGTGTTTAAAAAAGTAAATATATTTACATGAAGGAGAAA-A--CAActcactgcccactct----tacagcctctgccagtt-taccgtagcgtagtttcttaagagaataagct--atatgtcttcaccttt-tttcactgagctcattataatgtggattctgccttc-atcattgtgctaaaa----------------------------tttatctcctagttgccaaatccagtggctcccctcttagtccccaagttgacccctctgcagtattttgatactgttgattgttcccttgttgaaacattcctccatt----------------cttaatgtccaccaataaagagttggttaaataaaaattatagtgtacagttttataatagaata--------ttctgttgtagaaca---aaaaaatgcagccagtc--tttccataagaacatgtacaaacttctaatatatattaggtaaaaaagtgaggcgtaaaatattgtgtataatctgacccctttagtatacagtgt-aaaaaaatctatgtctgtgcttgttta----taCTTACTTTTTTCTCCCCTGGTGGATACGGGAAAC--TGAATAGTA-----GAACACAATT---AAAAAA--------------AACTGTGTGGCTTCTGTGCCAGGACCTGTGATAA---TTGG---Gtataaaagat
i rheMac3.chr7                  C 0 I 403
s macFas5.chr7                  107336281 790 - 171882078 AC----ATAGCTCCATTACTGCTACCTCCTTTTAGGGAGTTGCTTCTGAA---------------------------------CA--TCTAAAGATAA-------------------------CAGTTTTAA-AAGAG---------------CAGAAATGAGT-----------------------------------------TATTTTTCAGTGTCT-----------------------AAAacattatataacatacata--------catacatacataAACATGTTCATAAAGTTAAATGAAGTAGGATATAAAATGGGGCC------TAGTGTTTAAAAAA-TAAATATATTTACATGAAGGAGAAA-A--CAACTCACCTCCTACTCT----TACAGCCTCTGCCGGTT-TATCATAACCTAGTTTATTGAGAGAATAAGCT--ACATGTATTCACCTTT-TCTCATTGAGCTCATTATAATCTGGATTCTGCCTTC-ATCGTTGCGCTAAAA----------------------------TTTacctcttagttgccaaatctagtggctcccctcttagtccccaaattgacccctctgtagtattttgatactgtggattgctcccttgttgaaacattcctccatt----------------CTTGatgtccaccaataaagagctggttaaataaaaattatagtgt--agttttataatagaata--------ttctgttgtag-acc---aaaaaatgcaagtagtc--tttccataagagcatgtgcaaacttctaagatatattaagtaaaaaagtgaggcataaaatattgtgtataatctgacccctttagtatacagtgtaaaaaaaatctatgtctgtgcttgttta----taCTTACTTTTTTCTCCCCTGGTGGATACAGGAAAC--TGAATAGTA-----GAACACAATT-AAAAAAAA--------------AACTGTGTGGCTTCTGTGCCAGGACCTGTGATAA---TTGG---GTATAAAAGAT
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  21054551 790 -  24206276 ACATAGATAGCTCCATTACTGCTACCTCCTTTTAGGGAGTTGCTTCTGAA---------------------------------CA--TCTAAAGATAA-------------------------CAGTTTTTT-AAGAG---------------CAGAAATGAGT-----------------------------------------TATTTTTCAGTGTCT-----------------------AAAacattacataacatacata--------catacatacataAACATGTTCATAAAGTTAAATGAAGTAGGATATAAAATGGGGCC------TAGTGTTTAAAAAA-TAAATATATTTACATGAAGGAGAAA-A--CAACTCACCTCACACTCT----TACAGTCTCTGCCGGTT-TATCATAGCGTAGTTTATTGAGAGAATAAGCT--ACATGtcttcaccttt-tctcattgagctcattataatctggattctgtcttc-atcgttgcgctaaaa----------------------------tttacttctcagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgtagtattttgatactgttgattgttcccttgttgaaacattcctccatt----------------CTTGatgtccaccaataaagagctggttaaataaaaattatagtgt--agttttataatagaata--------ttctgttgtag-acc---aaaaaatgcaggcagtc--tttccataagagcatgtgcaaacttctaagatatactaagtaaaaaagtgaggcataaaatattgtgtatcatctgacccctttagtatacagtgt--aaaaaatctatgtctgtgcttgttta----tatTTACTTTTTTCTCCCCTGGTGGATACAGAAAAC--TGAATAGTA-----GAACACAATT---TAAAAA--------------AGCTGTGTGGCTTCTGTGCCAGGACCTGTGATAA---TTGA---GTATAAAAGAT
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     213108 761 -   2853901 AC----ATAGCACTGTTATTGCTACCTTCTTTTAGGAAGTTGTTTCTGAA---------------------------------GA--TCTAAAGATA--------------------------CGGTTTTAT-AATAG---------------CAGAATTGAGT-----------------------------------------TATTTTTCAGTGTCT-----------------------AAAATATTA---------------------CATATAT--------ATGTTCATAAGGTTAAATGAAGTAGGATATAAAATTTGGCC------TAGT-TTTAAAAAATTAAGTGTATTTACATGGAGGAGAAA-A--CAACTCACCTCCCACTTT----TATAGTCTCTGCCAGTT-TATCATAGCCTAGTATCTTGAGAGAATAAGCT--ATATGTCTTCACCTTT-TTTCACTGAACTCATTATAATCTGGATTCTGCCTTCTTTCTTTGCACTAACA----------------------------TGTatctcctagttgccaaatccagtggctcctctcttag-ccccaaattgacccctctgcagaattttgatactgttgattgttcccttgttgaaacattcctccatt----------------cttaatgtgtaccaataaagagttggttaaataaaaattatagtatacagttttataatagaata--------ttctgttgaag-ccaaaaataaaaagccaccaatc--tttccacaagagcatttgcaaagttctcagatacattgactgaaaaagcaaggcataaaatattgtgtataatctgaccccTTTAGTATACAGTGT-AAAAAAATCTA----TATGCTTGTTTA----TA----CCTCTTTCTTTTCTGGTGCGTACAGGAAACTGTTAATAGTA-----GGACACAATTAAAAAAAAA--------------AA------GGCATCTGTGCCAGGCTCTGTGATAA---TTGA---GTATAAAAGAC
i calJac3.chrY                  I 19360 C 0
s mm10.chr9                      55165616 857 + 124595110 AC----ATAGCTCTCTAGCTGTT-CCTCCTT-----AAATTGCTTATGagttaggcctactggcacaggcccataatcccagcta--cttggagttaaggcatggatattgcaaggtcaaggccagtctggtcaacagattgagatcctgtctcagaaGTGAAGATAGGGTTGAAACTATAACTCATTGGGAGAATGCTCACCTACTTTGTGCAGGGTCCTAGGTATAATCCCTGATACTaaaaaaaaaccccaaaaaacaaaaaacagaaaacaaacaaaaaaaaa-aCCTGTGTCAAGTTAAATGGAATAGGGC-TTATATTGGATC------TAAT-TATAGAAAG-TAAGTACATTTACCTGAAGGAAAGATA--CA------CTTTCACTCTGATAGATAGCCTCTGCCGATT-TCTCATAGCCTGGTTTCT------AATAACCTTGTTTTGTTTTGACTTTT-T---AGTTTACTTACTGGAGTAGAGAATCTGCCGTT-GT----------ATA----------------------------GACATTTCTTAGCTGTCCAGTCCAGTGGCTCCT-TTTTAGTACTAA---------------AGCATTTT---------------TCCATGGTTGAAATTTTGTTCCATC-----AACATGTATTACTTAATGCCCACCAATAAAGAGCTGGTTAAGT-------------------------------TA--------CTCCAGCTTAG-TAA-AAAAAGAATGCAGCCAGCCCTTTTCCATA-------GTACACATTGC-AAGATA---TAAGTAAAAAA-CAAGGCATAGAATATTGTGTA--ATCTGTCCTCTTTTGTATACAGTAT-TGTACAATACATATTAATGATGGCTTAGCTGTGCTTGCATTCTCCTTCCT--GTAAATGTAGGAAGCTGTTAACAGAACACAGAAAAATACTT---TAAGAG--------------TATCGATTGACTTCTCTG--AAGCTCTGTGATAA---ATGATGTGTATTCAAAGC
i mm10.chr9                     C 0 I 1
s canFam3.chr30                     36935 801 -  40214260 -------TAGTCCCTTTACTGCTATCTTCTTTTAGGACGGTAACTCTAAA---------------------------------AAGGTCCAGAAGTAT-------------------------GAGTCTTAT-AATAG---------------TAGTAATGA-C-----------------------------------------TGTTTTCCGCTGTCT-----------------------AAAATTTTTCAT------------------CA---------AAAAATGCTCACAAAATGAAATGAGCTAGGGCATAAAATTGGGTCTCATTGtattttttaaaaaa-ttaatatatttaCATAAAAGAAGAA-AACCAAATTACCCTCTATTCT----TATAG--TCTACCAGTTATTTCATAACCTCATTCCACGACAG---ATGTT--GTATTTCCTCACCTTTGCTTTACTTAATTCGTTATAGTCTAGATTGTGCCTTC-ATTTTTGCACTGAAAAAGAATTTTTTTTTTTGCACTGAAAATTTTTATGTC-TAGTTGCCAAATACAGGGACTCCTTTTTTAACCTTAAAACTGACATCTTTGCAGCAGTTTCATAGTGGTAATTTTTCCCTTATTGAAACATTCCTCCATTTAACAAACATTTATTACTTAAAGT-CGCCAATAAAAAGTCAGTTAAA----------GGCTACCAGTTTTATGATATAATA--------GTTTATTGTAG-TTA----------------------ATTCCATAGGAATGCATACAACTTTCCAAGATGTG-CACGTGAAAAGGCAAGGCATAGAATATTGT-TCTAATCTGGCCCTTTTTGCAAACAGTGTTGTAAAAATCCGTATTTGTGTGGGTTTA----TA---GTTTTACTCCTCCTGGGTGTGTACAAGAAACTCTTAATAGTA-----GAACAGAG-----AGAAGATTTTGTTTTGTTTTAATTGACTGGCTTCCATATCAGGCTGTGTCATCAGCGGTGG---GTACAGAAGTC
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                   59631256 1358 + 162156779 M

a score=910.000000
s hg38.chr15_KI270850v1_alt        177336 1 +    430880 a
s ponAbe2.chr15_random           10037684 1 +  10928107 A
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130228 1 + 121039945 A
i nomLeu3.chr6                  C 0 C 0
s calJac3.chrY                     213869 1 -   2853901 A
i calJac3.chrY                  C 0 C 0
s canFam3.chr30                     37736 1 -  40214260 A
i canFam3.chr30                 C 0 C 0
e mm10.chr9                      55166473 1 + 124595110 I
e chlSab2.chr29                  21055341 0 -  24206276 C
e papAnu2.chr7                   59631256 1358 + 162156779 M
e macFas5.chr7                  107337071 0 - 171882078 C
e rheMac3.chr7                  106599024 403 - 170124641 I
e panTro4.chr15_GL392289_random    175319 0 -    187897 C

a score=923042.000000
s hg38.chr15_KI270850v1_alt        177337 364 +    430880 aaaaaggcatgtccctgtcctctgggaagggacatgatagtcgaat-gggACTTTTATCAGATTGTTTTCTCCTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCCTTGTCCTACTTCTTtcttctcttctcattctgtgctttctctgagtaa--t--ctttgactcccattacttaagtcatgacctg--tgttccagggactcctaaatttgtatt-------------catctccggagtttcaaacccatatatctgt-ctgtataTCATATATGT-TAGGGAATCTCACTTGGA-GTGACATGGGTGTTCAAAATGATGGT--ATTTAAATTTTCATGTATTCACCTCCTAGCACTCTATCAGCCCCA
s panTro4.chr15_GL392289_random    175319 348 -    187897 -------CATGTCCCTGTCCTCTGGGAAGGGACATGATAATCAAAT-GAGACTTCTGTCGGATTCTTTTCTCCTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCCTTGTCCTACTTCTTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCCGTTACTTAAGTCATGACCTG--TGTTGCAGGGACTCCTAAATTTGTATT-------------CATCTCCAGAGTTTCAAACCCATATATCTGT-CTGTATATCATATAT-T-TAGGGAATCTCACTTGGA-GTGACATGGGTGTTCAAAATGATGAT--ATTTAAATTTTCACGTATCCATCTCCTAGCACTCTAT--------
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10037685 364 +  10928107 AAAAAGGCATGTCCCTGTCTTCTGGGAAGGGACAAGATAATCAAAT-GGGGCTTCTATCGGATTCTTTTCTCCTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCCTTGTCCTACTTCTTTCTTCCCTTCTCGTTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCTGTATT-------------CATCTCCAGAGTTTCAAACCCATATATCTGT-CTGTATATCATATATGT-TAGGGAATCTCACTTGGA-GTGACATGGGTGTTCAAAATGATGAT--ATTTAAATTTTCATGTATCCACCTCCTAGCACTCTATCAGCCCCA
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130229 361 + 121039945 AAAAAGGCATGTCCCTGTCCTCTGGGAAGGGACATGATAATTGAAT-GGGACGTTTATTGGATTCTTTTCTCCTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGGTCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCGTATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCCGTGTG-------------CGTCTCCAGAGTTTCAAACCCATATATCTGT-CTGCATGTCATATATGT-TAGGGAATCTCACTTGGT-GTGACATGCGTGTTCAAAATGA---T--ATTTAAATTTTCATGTATTCACCTTATAGCACTCTATCAGCCACA
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106599427 361 - 170124641 AAAAAGGCATGTCCATGTCCTCTGGGAAGGGACATGATAATCGAAT-GGGACTTCTATCGGATTCTTTTCTCCTGTTTTGATCTTATCACCC-ACCTTGGTCTCTTCCAATCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAACCCATATT-------------CATCTC--GAGTTTCAAACCCATATATCTGT-CTGTATATCATATATGT-TAGGGAATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGAT--ATTTAAATCTTCATGTATCTACCTCTTAGCACTGTATCAGCCCCA
i rheMac3.chr7                  I 403 C 0
s macFas5.chr7                  107337071 361 - 171882078 AAAAAGGCATGTCCATGTCCTCTGGGAAGGGACATGATAATCGAAT-GGGACTTCTATCGGATTCTTTTCTCCTGTTTTGATCTTATCACCC-ACCTTGGTCTCCTCCAATCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAACCCATATT-------------CATCTC--GAGTTTCAAACCCATATATCTGT-CTGTATATCATATATGT-TAGGGAATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGAT--ATTTAAATCTTCATGTATCTACCTTTTAGCACTGTATCAGCCCCA
i macFas5.chr7                  C 0 C 0
s chlSab2.chr29                  21055341 363 -  24206276 AAAAAGGCATGTCCATGTCCTCTGGGAAGGGACATGATAATTGAAT-GGGACTTCTATCGGATTCTTTTCTCCTGTTTTGATCTTATCACCC-GCCTTGGTCTCCTCCAATCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGTTTTCTCTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCTGTATT-------------CATCTCCAGAGTTTCAAGCCCATATATCTGT-CTGTATATCATATATGT-TAGGGGATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGAT--ATTTAAATCTTCATGTATCCACCTGTTAGCACTGTATCAGCCCCA
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     213870 349 -   2853901 AATTAGGCATCTCCCTGTCCTCTGTGAA-----CCGATAAGCTGAT-GGGACTTCCACTGGATTACCGTCTC--ATTTTTATCTTATCACCCGTCCTGGGTCTCT---GACCTGTTCTTCCTTGGCCTGCTTCTTTCTTCTTCTCTCATTTAGTGCTT----TGAATAA--T--CTTTTACTCCCATTACTTTAGTCATGACCTC--TGTTCTAGGGATTCCTAAATCCGCATT-------------CATTTCCAGAGTTT-AAACCCATATATCTGT-CTGTATATCATACATGT-TAGGGAGTCTCACTTGGA-GTGCCATGGGTGTTCAAAATGATGAC--ATTTAAATTTGCATTTACCCACCTTCTAGCACTGTATCAGCCCCA
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55166474 341 + 124595110 ---AAGGTTTGTC--TGTCCTGTGCTAA-----TTGATAACCTAGTGGGGACCTCTATGAGACCACCATTCCTTGGCTC--TCTTACTATCTCGTCTTGGTCTCCTCTGAGATGCTCTTCCTTGGTATGTCTCTTTATTATCTTTTTATTCTGTGTTTTCTCTGTGCAAGCT--CTTTTACTCTCATTACTTAAGTCATACTTTATTTATTGCAGAGATCCCTAAATCTGTATCTCTAGCCAGAATGTATCTTCAGAGGTTGAAACCCATACACTTATGTTATTGATCCTCTCTATCTAGGGGATCTTGCTTAGATGTGCCATGGG------ATGTGCTTGTCAGTTTCAATTT----GTCTCCA------------------------
i mm10.chr9                     I 1 C 0
s canFam3.chr30                     37737 355 -  40214260 ----AGTCAAATCCCTCTTCTCTGGGAA-----CTGATAATCTTAC-GAGAACTTCATCAGGtcactgtctcctgttcctgtctctgaaccctgccttggtcttctcagagctc-----ccttggtct---------tcctcttctcattgcatgctttctgtgagaaa--tcacttttactactgttacttaaatcacggtcta--tattccatggattcctaaatctgtacctttagctaaaatttatgtcttgag--tcaagccggtgtatctgt-ctatatatcctgtagatccagggaatctcacttggatgtgccatgactgtttaaaatgactac--atctaaatttgagcCTACCTACCT-ATGGCACTCCACCAGCCCCA
i canFam3.chr30                 C 0 C 0
e papAnu2.chr7                   59631256 1358 + 162156779 M

a score=788392.000000
s hg38.chr15_KI270850v1_alt        177701 276 +    430880 TCATGTGTCCCATCAGTAATTCTCCTTGTCATTGTGAGTGGGACAAAATGAAATAATCAAACTAGTCACCCATGCCTCAACCTGGGAACTGTCTTAGCGTTCTTTTATATGCTACTGTTCTCTGAC-------CTCCCCCCCAA-------AGTACGTTTCTAAGA-CCTGTCC-------TTCTAAATGTCTCTTACTATTTTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAAATGCTTTTTGTGTGTGTGTGGTGGGGGAAGAGAGTAAAATTGAAATTCGTGGAAAATGT
s panTro4.chr15_GL392289_random    175667 214 -    187897 -------------------------------------------------------------CTAGTCACATATGCCTAAACCTGGGAACTGTCTTAATATTCTTTTATATACACCTGT--TCTGAC---------CCCCCCCAAA----CTAGTAAATTTCTGAGA-CCTGTCC-------TTCTGAATGTCTCTTACAATTTTCCCTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAATGCGTTGTGTGTGTGTGTGGTGGGGGAAGAGAGTTACATTGAAATTTGTGGAAAACGT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10038049 271 +  10928107 TCATGTATTCCATCAATAATTCTCCTTGTCATTGTGAGTGGGATAAAATGAAATAATCAAACTAGTCACCCATGCCTAAGCCT-GGAACTGTCTTAGCGTTCTTTTATATGCTACTGTTCTCTGA----------TCCCCCCAAA----CTAGTAAATTTCTAAGA-CCTGTCC-------TTCTGAATGTCTCTAACTATTTTCCCTGTGATCTAAGTTTCTTCTTCCCATCCCTCAAATGCTT----TGTGTGTGTGGTGGGGGAAGAGAGTAAAATTGAAATTAGTGAAAAATGT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130590 277 + 121039945 TCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGAGTGGGACAAAATGAAATAATCAAACCAGTCACCCATGCCTAAACCTGGGAACTGTCTTAGCGTTCTTTTATATGCTACTGTTCTCTGAC---------CCCCCCCAAA----CTAGTAAATTTCTAAGA-CCTGTCC-------TTCTGAATGTCTCTTATTATTTTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAGATGCTTTTTGTGTGTGTGTGGTGGGGGAAGGGAGTAAAATTGAAATTCGCGGATAATGT
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106599788 286 - 170124641 TCATGTGTTCCATCAACAATTCTCCTTGTCATTGTGAGTGGGACAAAATGAAATAATCAAACTAGTCACCCATGCGCAAACCTGGGAACTGTCCTAGCATTCTTTTATATACTACTGCTCTCTGACTGCCCCCCTCCCCCTGAAA----CTAGTAAATTTCTAAGA-CCTGTCC-------TTCTGAATGTCTCTTACTATTTTCCTTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAATGCTTTTTGTGTGTGTGCGGTGGGGAAGGAGAGTAAAATTGAAATTCATGGAACTTGT
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107337432 286 - 171882078 TCATGTGTTCCATCAACAATTCTCCTTGTCATTGTGAGTGGGACAAAATGAAATAATCAAACTAGTCACCCATGCGCAAACCTGGGAACTGTCCTAGCATTCTTTTATATACTACTGCTCTCTGACTGCCCCCCTCCCCCCGAAA----CTAGTAAATTTCTAAGA-CCTGTCC-------TTCTGAATGTCTCTTACTATTTTCCTTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAATGCTTTTTGTGTGTGTGCGGTGGGGAAGGAGAGTAAAATTGAAATTCATGGAACTTGT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59632615 285 + 162156779 TCATGTGTTCCATCAATAATTCTCCTTGTAATTGCGAGTGggacaaaatgaaataatcaaactAGTCACCCATGCCTAAACCTGGGAACTGTCCTAGCATTCTTTTATATACTACTGCTCTCTGACTGCCCCACTCCCCCCGAAA----CTAGTAAATTTCTAAGA-CCTGTCC-------TTCTGAATGTCTCTTACTATTTTCCCTGTGATCTCACTTTCTTCCTCCCATCCCTCAAAtgc-ttttgtgtttgtgtggtggGGGAAGAGAGTAAAATTGAAATTCATGGAAAATGT
i papAnu2.chr7                  M 1358 C 0
s chlSab2.chr29                  21055704 285 -  24206276 TCATGTGTTCCATCAATAATTATCCTTGTCCTTGTGGGTGGGACAAAATGAAATAATCAAACTAGTCACCCATGCGCAAACCTGGGAACTG--CTAGCATTGTTTTATATACTACTGCTCTCTGACTGCCCCCCTCCCCCTGAAA----CTAGTAAATTTCTAAGACCCTGTCC-------TTCTGAATGTCTCTTACTATTTTCCCTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAATGCTTTTTGTGTGTGTGCGGTGGGGGAGGAGAGTAAAATTGAAATTCATGGAACATGT
i chlSab2.chr29                 C 0 C 0
s calJac3.chrY                     214219 261 -   2853901 TCATGCTTTTCCGCAATAATTCTCCTTGTGAGTGTGTGTGGGACAAAATGAAATAATTAAACTAGTCACCCGTGCCTAAACCTGGGAACTGTCTTGGCGTTCTTTTATATACTACTGTTCCCTGAA---------CCCCC--------------GAATTTCTAAGA-CCTGTCC-------TTCTGAATGTCTTTTACTATTTTTCGTGTGATCTCAGTTTCTTCTTCCCATTGCTCAAATACTTTTTTTGTGTG------GGGGGAAGGGAGTAAAATGGAAATTCCTGGAAAATGG
i calJac3.chrY                  C 0 C 0
s mm10.chr9                      55166815 240 + 124595110 TCTTGTTTTCCCTCACTAATTCTCTCCGTG--------------AAAACGAAACAATGATACTGGTCATCTGTGCCTGGCCCTGGGAACT---TAAGAGTTCTTTTTTATACTTCTGTTCCCCAAA------------CCATAAACT--CTAGTAACTACCAAAAA-CTTGTTCACTT---ACCTAAATAGTTTAGAC---CCTCCCTGTGATCTGAGTTTCTTCC-ACAGTCCCTGAAGAG-------------------GAGGGAAGTGTTAAAAGTTAAACTTCCTGGAAAATAG
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     38092 258 -  40214260 --CCCTTTCCCTTCAGTCATTCTCTTTGTGATTATGAGCGGGACAAGATGAAATAATGAAGCTTGTCACCCATGCCTGAACCTGGGAACTA-------AAGGTTCTGCATACCTAGATTTCCCGAC---ACCTCCCCTCTCCAAGCTACCTACTGAGTTGCTAAGA-CCTGTCCGTCTACCTTCTAAATATTTCCCACC------------ATCTTAGTTTCTTCC----ATCCTTCAAACGCTTCTTTG-----------GGGGAGGGAGTGTAAAGTTGAAATTCCTGAAAGATGT
i canFam3.chr30                 C 0 C 0

a score=9585.000000
s hg38.chr15_KI270850v1_alt        177977 3 +    430880 ACT
s panTro4.chr15_GL392289_random    175881 3 -    187897 ACT
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10038320 3 +  10928107 ATT
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130867 3 + 121039945 ACT
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106600074 3 - 170124641 ACT
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107337718 3 - 171882078 ACT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59632900 3 + 162156779 ACT
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21055989 3 -  24206276 ACT
i chlSab2.chr29                 C 0 C 0
s mm10.chr9                      55167055 3 + 124595110 ACT
i mm10.chr9                     C 0 C 0
s canFam3.chr30                     38350 3 -  40214260 ACA
i canFam3.chr30                 C 0 C 0
e calJac3.chrY                     214480 0 -   2853901 C

a score=7413.000000
s hg38.chr15_KI270850v1_alt        177980 18 +    430880 ACCctgtctttcttcctt
s panTro4.chr15_GL392289_random    175884  6 -    187897 AGCCTG------------
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10038323  6 +  10928107 ACTCTC------------
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130870  6 + 121039945 ACCCTG------------
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106600077 18 - 170124641 ACCCTGTCTTTCTTTGTT
i rheMac3.chr7                  C 0 C 0
s macFas5.chr7                  107337721 18 - 171882078 ACCCTGTCTTTCTTTGTT
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59632903 18 + 162156779 Actctgtctgtctttttc
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21055992 18 -  24206276 ACCCTGTCTTTCTTTGTT
i chlSab2.chr29                 C 0 C 0
s canFam3.chr30                     38353 18 -  40214260 GCCCGAGTTTTCCTGTTT
i canFam3.chr30                 C 0 I 18
e mm10.chr9                      55167058  0 + 124595110 C
e calJac3.chrY                     214480  0 -   2853901 C

a score=15987.000000
s hg38.chr15_KI270850v1_alt        177998 13 +    430880 tctttctttctct
s ponAbe2.chr15_random           10038329 11 +  10928107 --tttctttcttt
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130876 13 + 121039945 tctttcttccttt
i nomLeu3.chr6                  C 0 C 0
s rheMac3.chr7                  106600095 13 - 170124641 TCAttcttttttt
i rheMac3.chr7                  C 0 I 49
s macFas5.chr7                  107337739 13 - 171882078 TCAttcttttttt
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59632921 13 + 162156779 ttcttttttttct
i papAnu2.chr7                  C 0 I 6
s chlSab2.chr29                  21056010 13 -  24206276 TCATTCttttttt
i chlSab2.chr29                 C 0 C 0
e mm10.chr9                      55167058  0 + 124595110 C
e calJac3.chrY                     214480  0 -   2853901 C
e canFam3.chr30                     38371 18 -  40214260 I
e panTro4.chr15_GL392289_random    175890  0 -    187897 C

a score=-13788.000000
s hg38.chr15_KI270850v1_alt        178011 17 +    430880 ----ctttctctctctctctc
s panTro4.chr15_GL392289_random    175890  2 -    187897 -------------------TC
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10038340  6 +  10928107 ----cttt-----------ct
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130889  9 + 121039945 ----ctttctt--------tc
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107337752  4 - 171882078 ---cctt--------------
i macFas5.chr7                  C 0 C 0
s papAnu2.chr7                   59632940 17 + 162156779 cttccttgccctccctc----
i papAnu2.chr7                  I 6 I 116
s chlSab2.chr29                  21056023 10 -  24206276 ---cctttttttt--------
i chlSab2.chr29                 C 0 C 0
e mm10.chr9                      55167058  0 + 124595110 C
e calJac3.chrY                     214480  0 -   2853901 C
e canFam3.chr30                     38371 18 -  40214260 I
e rheMac3.chr7                  106600108 49 - 170124641 I

a score=19511.000000
s hg38.chr15_KI270850v1_alt        178028 13 +    430880 tttctttctttca
s panTro4.chr15_GL392289_random    175892 13 -    187897 tttctttctttcg
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10038346 13 +  10928107 tttctttctgttg
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130898 13 + 121039945 tttctttctCTCA
i nomLeu3.chr6                  C 0 C 0
s macFas5.chr7                  107337756 13 - 171882078 tttttttcttttg
i macFas5.chr7                  C 0 I 2
s papAnu2.chr7                   59633073 13 + 162156779 tttctttctttcg
i papAnu2.chr7                  I 116 C 0
s chlSab2.chr29                  21056033 13 -  24206276 tttttttcttttg
i chlSab2.chr29                 C 0 I 2
e mm10.chr9                      55167058  0 + 124595110 C
e calJac3.chrY                     214480  0 -   2853901 C
e canFam3.chr30                     38371 18 -  40214260 I
e rheMac3.chr7                  106600108 49 - 170124641 I

a score=11293.000000
s hg38.chr15_KI270850v1_alt        178041  8 +    430880 a--tgaagtc
s panTro4.chr15_GL392289_random    175905 10 -    187897 aggtgaagtc
i panTro4.chr15_GL392289_random C 0 C 0
s ponAbe2.chr15_random           10038359 10 +  10928107 agatgaagtc
i ponAbe2.chr15_random          C 0 C 0
s nomLeu3.chr6                  102130911  8 + 121039945 a--tgaagtc
i nomLeu3.chr6                  C 0 I 413
s rheMac3.chr7                  106600157  8 - 170124641 --atgaactc
i rheMac3.chr7                  I 49 C 0
s macFas5.chr7                  107337771  8 - 171882078 --atgaagtc
i macFas5.chr7                  I 2 C 0
s papAnu2.chr7                   59633086  8 + 162156779 --atgaactc
i papAnu2.chr7                  C 0 C 0
s chlSab2.chr29                  21056048  8 -  24206276 --atgaagtc
i chlSab2.chr29                 I 2 C 0
e mm10.chr9                      55167058  0 + 124595110 C
e calJac3.chrY                     214480  0 -   2853901 C
e canFam3.chr30                     38371 18 -  40214260 I

a score=446199.000000
s hg38.chr15_KI270850v1_alt        178049 201 +    430880 tcgctcttgtcgcccaggctggagtacaatggcacaatctcggctcactgcaacctccatctcctgggttcaagtgattctcctgcctcaacctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgta-tttttagtagagatgaggtttcatcatgttcaccaggctggtctcgaactcctg
s panTro4.chr15_GL392289_random    175915 201 -    187897 tccctcttgtccccctggctggagtgcaatggcacaatcttggctcactgcaacctccatctcctgggttcaagcagttctcctgcgtcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtg-tttttagtagagacggggtttcatcatgttggccaggctggtctcgaactcctg
i panTro4.chr15_GL392289_random C 0 n 0
s ponAbe2.chr15_random           10038369 201 +  10928107 tccctcttgtccccctggctggaatgcaatggcacaatgttggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcaccctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgta-tttttagtagagatgaggtttcatcatgttggccaggctggtctcgaactcctg
i ponAbe2.chr15_random          C 0 I 68
s nomLeu3.chr6                  102131332 198 + 121039945 tcgctcttgttgcccaggctggagtacaatggcgcaatctcagctcaccgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatctgccaccatgcccagctaatttttgta-tttttagtagagatgaggtt---tcatgttggccaggctggtctcaaactccta
i nomLeu3.chr6                  I 413 I 68
s rheMac3.chr7                  106600165 200 - 170124641 tcactcttgtcccccaggctgcagtgcaatggtgcaattttgccttactgcaacctccacctcccaggttcaagcaattctcctggctcagcctcctgagtagctgggattacaagcacctgtcaccatgcccagctaatttttgta-tttttagtagagatggggtttcaccatgttggtcaggctggtctc-agctcctg
i rheMac3.chr7                  C 0 I 68
s macFas5.chr7                  107337779 201 - 171882078 tcactcttgtcccccaggctggagtgcaatggtgcaatcttggctcactgcaacctccacctcctgggttcaagtgattc-cctgccttagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtattttttaatagagatgaggtttcatcatgttggccaggctggtctcaaactcccg
i macFas5.chr7                  C 0 I 68
s papAnu2.chr7                   59633094 200 + 162156779 tcactcttgtcccccaggctgcagtgcaatggtgcaattttgccttactgcaacctccacctcccaggttcaagcaattctcctggctcagcctcctgagtagctgggattacaggcacctgtcaccatgcccagctaatttttgta-tttttagtagagatggggtttcaccatgttggtcaggctggtctc-agctcctg
i papAnu2.chr7                  C 0 I 68
s chlSab2.chr29                  21056056 201 -  24206276 tcactcttgtcccccaggctggagtgcaatggtgcaatcttagctcactgcaacctccacctcctgggttcaagcgattc-cctgccttagcctcctgagtagctgggattacaggcacctgccaccatgcccagccaatttttgtattttttaatagagatgaggtttcatcatgttggccaggctggtctcaaactcctg
i chlSab2.chr29                 C 0 I 68
e mm10.chr9                      55167058   0 + 124595110 C
e calJac3.chrY                     214480   0 -   2853901 C
e canFam3.chr30                     38371  18 -  40214260 I

a score=8400.000000
s hg38.chr15_KI270850v1_alt    178250 3 +    430880 gcc
s panTro4.chr15              17701279 3 -  99548318 gcc
i panTro4.chr15             n 0 C 0
s ponAbe2.chr15_random       10038638 3 +  10928107 gcc
i ponAbe2.chr15_random      I 68 C 0
s nomLeu3.chr6              102131598 3 + 121039945 gcc
i nomLeu3.chr6              I 68 C 0
s rheMac3.chr7              106600433 3 - 170124641 gcc
i rheMac3.chr7              I 68 C 0
s macFas5.chr7              107338048 3 - 171882078 gcc
i macFas5.chr7              I 68 C 0
s papAnu2.chr7               59633362 3 + 162156779 GCC
i papAnu2.chr7              I 68 C 0
s chlSab2.chr29              21056325 3 -  24206276 gcc
i chlSab2.chr29             I 68 C 0
e mm10.chr9                  55167058 0 + 124595110 C
e calJac3.chrY                 214480 0 -   2853901 C
e canFam3.chr30                 38371 18 -  40214260 I

a score=10740.000000
s hg38.chr15_KI270850v1_alt    178253 4 +    430880 ACTA
s panTro4.chr15              17701282 4 -  99548318 ACTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10038641 4 +  10928107 ACTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102131601 4 + 121039945 ACTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106600436 4 - 170124641 ACTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107338051 4 - 171882078 CCTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59633365 4 + 162156779 ATTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21056328 4 -  24206276 ACTA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 214480 4 -   2853901 ACTA
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55167058 0 + 124595110 C
e canFam3.chr30                 38371 18 -  40214260 I

a score=144227.000000
s hg38.chr15_KI270850v1_alt    178257 42 +    430880 CCCTGTCTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCT
s panTro4.chr15              17701286 41 -  99548318 CCCTGTCTTTCTTGTTGCTTGGTATGACTC-ACTAACCTGCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10038645 38 +  10928107 CC----CTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102131605 42 + 121039945 CCCTGTCTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106600440 42 - 170124641 CCCTGTCTTTCTTGTTGCTTGGTATGACTCCACTACTCTGCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107338055 42 - 171882078 CCCTGCCTTTCTTGTTGCTTGGTATGACTCCACTACTCTGCT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59633369 42 + 162156779 CCCTGTCTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21056332 42 -  24206276 CCCTGCCTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 214484 42 -   2853901 CCCTGTCTTTCTTGTTGCTTGGTATGAGTCCACTACCCTGAT
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55167058 42 + 124595110 CCCTGTTTTTCCTGTGGCTTGGTATGGAGCCATCATACTGCT
i mm10.chr9                 C 0 I 9
e canFam3.chr30                 38371 18 -  40214260 I

a score=33980.000000
s hg38.chr15_KI270850v1_alt    178299 11 +    430880 CCCTCTCTCCC
s panTro4.chr15              17701327 11 -  99548318 GCCTCTCTCCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10038683 11 +  10928107 GCCTCTCTCCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102131647 11 + 121039945 GCCTGTCTTCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106600482 11 - 170124641 GCCTCTCTCCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107338097 11 - 171882078 GCCTCTCTCCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59633411 11 + 162156779 GCCTCTCTCCC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21056374 11 -  24206276 GCCTCTCTCCC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 214526 11 -   2853901 GCCTCTCTCCC
i calJac3.chrY              C 0 I 1
e mm10.chr9                  55167100  9 + 124595110 I
e canFam3.chr30                 38371 18 -  40214260 I

a score=983024.000000
s hg38.chr15_KI270850v1_alt    178310 445 +    430880 CCTGCAGCgggataatttaggaatcagagagactgaagggttgaggaggatatatattattattatttaggtgcaccggcccagtcaaatttaacatctaaaggactgagccctgaacaaagagtcaggttaccttttaaacattttatcgggtc-gggggagatctgtgcagggggaggcatattacagaagcaagaaacaaagacagttattcagttgagacatgcattacattatttcttacttttcaaggaaaaacctgtttttcgact-gagtttatctgtctagtgaccttgcagctgcacagctagagaatcagggtcttcacaatgcctgggagacgaggagagataaggttcactagcc----tcagaaaaacagacagttaatttttaaaggactccacctctttttct------------ttcttagggggaattgggttttt-----------------tttttttt---------t
s panTro4.chr15              17701338 442 -  99548318 ACTGCAGTgggataatttaggaatccgagagactgaggggttgaggaggatatatattattatt---taggtgcaccggcccagtcaaatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagcattttgtgggttc-ggggaagatctgtgcaaggggaagcatattacagaagcaagaaacaaagacagttattcagttgagacatgcattacattatttcttacttttcaaggaaaaacatgttttacaacttgagtttatctgtctagtgaccttgcagctgcacagctagagaaacagggtcttcacaatgcctgggagaggaggagagatgaggttcactagcc----tcagaaaaacaggcagttaatttttaaaggactccacctctttttct------------ttcttaggggggattcggttttt-----------------tttttttt---------t
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10038694 441 +  10928107 ACTGCAGCAggataatttaggaatcagagacactgaggggttgaggaggaaatatgttattatt---taggtgcaccggcccagtcagatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagcattttgtggggtg-gggagagatctgtgcagggggaagcatattacagaagcaagaaacaa----agttattcagttgagacatgcattacattatttcttacttttcaaagaaaaacatgttttatgacttgagtttacctgtctagtgaccttgcagctgcacagctagagaaacagggtcttcacaatggctgggagaggaggagagataaagttcactagcc----tcagaaaaacagacagttaatttttaaaggactccacctctttttct------------ttcttagtgggaattgagttttt-----------------tttttttt------acat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102131658 451 + 121039945 CCTGCAATgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatt---taggagcaccggcccagtcaaatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagcattttgtggggtg-gggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacagttattcagttgagacatgcattacgttatttcttacttttcaaggaaaaacgtgttttacgacttgagtttgtctgtctagtgacctcgcagctgcacagctggagacacagggtcttcgcaatgcctgggagaggaggagagatagggttcactagcc----tcagaaaaacagacagttaatttttaaaggactccacctctttttct------------ttcttagggtgaattgggttttt-----------------tgtttttttttttaacat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106600493 452 - 170124641 CCTGCAGCgggataatttaggaatcagagagactgaggggttgatgaggatatatattatcatt---taggtgccctggcccagtcagatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagcattttgtggggt--gggggagatctatgcagggggaagcatattacagaagcaagcaacaaagatagtttttcaattgagacatacattacattatttcttacttttcaaggaaaaacatgttttacaacttgagtttatctg--tagtgaccttgcagctgcacagctagagaaacagggtttttgccatgcctgggaa---aggagagataaggctcactagccacagtcagaaaaacaggcagttaatttttagagtgctccacctctttttctttcttagggggatttctagggggaattggtttttg-----------------tttgtttt---------t
i rheMac3.chr7              C 0 I 2
s macFas5.chr7              107338108 443 - 171882078 CCTGCAGCAggataatttaggaatcagagagactgaggggttgatgaggatatatattatcatt---taggtgccctggcccagtcagatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagcattttgtggggtagaggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacagttattcagttgagacatgcattacattgtttcttacttttcaaggaaaaacatgttttacaacttgagtttatctgtctagtgaccttgcagctgcacagctagagaaacagggtcttcacaatgcctgggaaaggaggagagataaggctcactagcc----tcagaaaaacaagcagttaatttttaaaggactccacctctttttct------------tttctagggggaattggtttttg-----------------tttgtttt---------t
i macFas5.chr7              C 0 I 2
s papAnu2.chr7               59633422 453 + 162156779 CCTGCAGCGGGATAATTTAGGAATCAGAGAGACTGAGGGGTTGAGga-gatatatattattatt---taggtGCCCTGGCCCAGTCAGATT-AACATCTAAAGGACTGAGCCCTGAACAAAG----AGGttaccttttaagcattttgtggggt--gggggagatcTATGCAGGGGGAAGCATATTACAGAAGCAAACAACAAAGATAGTTTTTCAATTGAGACATACATtacattatttcttacttttcaaggaaaaacatgttttacaacttgagtttatctgtctagtgaccttgcagctgcacagctagagaaacagggtcttcacaatgcctgggaaaggaggagaggtAAGGCTCACTAGCC----tcagaaaaacaggcagttaatttttaaagtactccacctctttttct------------ttcttaggggGAATtcggttttgctttttttttttttttttttttttt---------t
i papAnu2.chr7              C 0 I 2
s chlSab2.chr29              21056385 442 -  24206276 CCTGCAGCgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatt---taggtgccctggcccagtcagatt-aacatctaaaggactgagcgctgaacaaagagtcaggttaccttttaagcattttgtggggta-aggggagatctgcacagggagaagcatattacagaagcaagaaacaaagacagttattcaattgagacatgcattacattgtttcttacttttcaaagaaaaacctattttatgacttgagtttatctgtctagtgaccttgcagctgcacagctagagaaacagggccttcacaatgtctgggaaaggaggagagataaggctcacttgcc----tcagaaaaacaagcagttaatttttaaaggactccacctctttttct------------tttttagggggaattggtttttt-----------------tttttttt---------t
i chlSab2.chr29             C 0 I 132
e mm10.chr9                  55167100   9 + 124595110 I
e calJac3.chrY                 214537   1 -   2853901 I
e canFam3.chr30                 38371  18 -  40214260 I

a score=26550.000000
s hg38.chr15_KI270850v1_alt    178755 19 +    430880 ----ataactgagtttttgctta
s panTro4.chr15              17701780 18 -  99548318 ----acaaac-agtgtttgctta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10039135 19 +  10928107 ----acaactgagtttttgctta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102132109 19 + 121039945 ----acaaatgagtttttgctta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106600947 23 - 170124641 acatacagctgagtttttgctta
i rheMac3.chr7              I 2 C 0
s macFas5.chr7              107338553 23 - 171882078 acatacagctgagtttttgctta
i macFas5.chr7              I 2 C 0
s papAnu2.chr7               59633877 23 + 162156779 acattcaacTGAGTTTTTGCTTa
i papAnu2.chr7              I 2 C 0
e mm10.chr9                  55167100  9 + 124595110 I
e calJac3.chrY                 214537  1 -   2853901 I
e canFam3.chr30                 38371 18 -  40214260 I
e chlSab2.chr29              21056827 132 -  24206276 I

a score=96656.000000
s hg38.chr15_KI270850v1_alt    178774 94 +    430880 cacattc-tttT-T----ATTAttattattatactttaagttctagggtacatttgcataacgttcaggtttgttacatatgtatacatgtgccatgttg
s panTro4.chr15              17701798 98 -  99548318 cacattc-tttT-TTAttattattatttttatactttaagttctaggatacatatgcataatgtggaggttttttacatatgtatacacgtgccatgttg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10039154 99 +  10928107 catattc-ttttattattattattattattatactttaagttctagggtacatgtgcataatgtgcaggtttgttacatatgtatacatgtgccatgttg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102132128 92 + 121039945 cacattg-tttt-------ttattattattatactttaagttctagggtacatgtgcataatgtgcaggtttgttacatatgtatacatgtgccatgttg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106600970 91 - 170124641 cacattc-tttt-------tttttttaattacactttaagtt-tagggtacatgtgcataatatgcagttttgtcacatatgtatacttgtgccatgttg
i rheMac3.chr7              C 0 I 1102
s macFas5.chr7              107338576 93 - 171882078 cacattcttttt-------tttttttaattACactttaagttctagggtacatgtgcataatgtgcagttttgtcacatatgtatacatgtaccatgttg
i macFas5.chr7              C 0 C 0
e mm10.chr9                  55167100  9 + 124595110 I
e calJac3.chrY                 214537  1 -   2853901 I
e canFam3.chr30                 38371 18 -  40214260 I
e chlSab2.chr29              21056827 132 -  24206276 I
e papAnu2.chr7               59633900  0 + 162156779 C

a score=682654.000000
s hg38.chr15_KI270850v1_alt    178868 873 +    430880 gtgtcctgcacccattaactcatcatttacattaggtata---------------cctcccccctcccccccaccccacaacaggtccccgtgtgtgatgttccccatcctgtgtccaagtgttttcattgttcaattctgacctatgagtgagaacatgcagtgtttggttttctgtccttgagatagtttgctcagaatgatggtttccagcttcacccatgtccctacaaaggacatgaattcatc----cttatggctgcatggtattccatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgcttttgtgaatggtgccgcgataaacatacgtgtgcatatgtgtttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaacggtatttctagttctagatcctcgaggaatcaccacactgtcttccacgatggctgaactagtttacagccccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatggttgccattctaactggtctgagatggtgtctcattgtagttttgatttgcatttctctgatggccagtgatgatgagtgttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgttgatggggttgcttgatttttttcttgtaaatttgttttaagttctttgtagattctggatattagccttttgtcagaggggtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagttt
s panTro4.chr15              17701896 854 -  99548318 gtatgctgtacccattaactcatcatttacattaggtata---------------cctctcacctcccccc-accccacaacaggccccagtgcatgatgttccccatcctgtgtccaagtgttttcattgttcagttcccacctatgagtgagaacatgtggtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtgtatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcactaaacatatgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaattgccacactgtcttccacaatggttgaactagtttacagttccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcgcctgttgtttcctgactttttaatggttgccattctaactggtgtgagatggtatctcattgtggttttgatttgcattgctctgatggccagtgatgatgggtgttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtctctgtt---------------------gatggggttgtttgatttttttcttgtaaatttgttt-aagttctttgtagattctggatattagtcctttgtcagaggggaagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10039253 872 +  10928107 gtgtgctgcacccattaactcgtcatttacattaggtatatctcctaagactatccctcccccttccttcc-accccacgacaggccccggtgtgtgatgttccccatcctgtgtccaagtgttctcattgttcagttcccacctatgagtgagaacatgctgtgtttggttttctgtccttgcgatagtttggtcagaatgatggtttccagcttcacccatgtccctacaaaggatatgaactcatc-ttttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcactgatggacatttgggttgg----------------ttgcgaatagtgctgcaataaacatgcgtgtgcttgtgtctttatagcagaatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccattaacagtgtaaaagttttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctggtggccagtgatgatgagcattttttcatgtgtctgttggctacataaatgtcttcctttgagaagtgtctgttcgtatcctttgcccactttttgat-gggttatttgatttttttcttgtacatttgttt-aaattctttgtagattccggatattagccctttgtcagaggggtagattataaaaattttctcccattctgtaggttgcctgttcactctgatggtagttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102132220 867 + 121039945 gtgtgctgcacccattaactcatcatttacattaggtata---------------cctcccccctcccccc-accccacaacaggccctggtgtgtgatgttccccatcctgtgtccaagtgttttcattgttcaattcccacctatgagtgagaatgtgtggtgtttggttttctgtccttgtgatagtttgctcagaatgatggtttccagcttcatccatgtcccaacaaaggacatgaagtcatc-ctttttatggctgcatagtattccatggtgtatctgtgccacattttcttaatccagtgtatcattgatggacatttgggttggttccaagtctttgcctttgtgaatagtgccacaataaacat--gtgtgcatgtgtctttttagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttgtagttctagatccttgaggaatcgccacactgtcttccacaatggttgaactagtttacagccccaccaacagtgt--aagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatggttgccattctaactggtgtgaaatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagtgttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtttctgttcatatccttcacccacttattgttggag----ttgatttttttctcgtacgtttgttttaagttctttgtagattctggatattagccctttgtcagaggggtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338669 870 - 171882078 gtgtgctgcacctattaacttgtcatttacattaggtatatctcctaatgctatccctccccactcccccccaccctacgacaggccccagtgtgtgatgttccccatcctgtatccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagctgcatccacgtccctacaaaggacatgaactcatc-ctttttatggctgcatagtattctatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatggtgccacaataaacatatgtgtgcatgtgtctttatagcatcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagattattgaggaatcaccacactgtcttccacaatggttgaacgagcttacagtcccaccaacagtgtaaaagtgttcctatttctcaacaacctatccagcacctgttgtttcctgatttttttatgatcacccttctaactggtgtgagatggtatctcattgtggttttgatttgcatttctc-------------tgatgagcattttttcatgtgtctattgactgcataaatgtcttcttttgagaaatgtctgttcatatccttcaccc-ctttttgatggggtggtttga-ttttttcttgtaaattt-----aagttctttgtagtttctggatattagccctttgtcagatgagtagattgcaaaaa-tttctcccattctgtaggttgcctgttcactctgatggtagttt
i macFas5.chr7              C 0 C 0
e mm10.chr9                  55167100   9 + 124595110 I
e calJac3.chrY                 214537   1 -   2853901 I
e canFam3.chr30                 38371  18 -  40214260 I
e chlSab2.chr29              21056827 132 -  24206276 I
e papAnu2.chr7               59633900   0 + 162156779 C
e rheMac3.chr7              106601061 1102 - 170124641 I

a score=1500.000000
s hg38.chr15_KI270850v1_alt    179741 1 +    430880 c
s panTro4.chr15              17702750 1 -  99548318 c
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10040125 1 +  10928107 c
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102133087 1 + 121039945 c
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339539 1 - 171882078 c
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59633900 1 + 162156779 c
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  55167100 9 + 124595110 I
e calJac3.chrY                 214537 1 -   2853901 I
e canFam3.chr30                 38371 18 -  40214260 I
e chlSab2.chr29              21056827 132 -  24206276 I
e rheMac3.chr7              106601061 1102 - 170124641 I

a score=9744.000000
s hg38.chr15_KI270850v1_alt    179742 5 +    430880 ACATT
s panTro4.chr15              17702751 5 -  99548318 ACATT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10040126 5 +  10928107 ACATT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102133088 5 + 121039945 ACATT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106602163 5 - 170124641 acatt
i rheMac3.chr7              I 1102 C 0
s macFas5.chr7              107339540 5 - 171882078 ACATT
i macFas5.chr7              C 0 I 323
s papAnu2.chr7               59633901 5 + 162156779 acatt
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  55167100 9 + 124595110 I
e calJac3.chrY                 214537 1 -   2853901 I
e canFam3.chr30                 38371 18 -  40214260 I
e chlSab2.chr29              21056827 132 -  24206276 I

a score=29043.000000
s hg38.chr15_KI270850v1_alt    179747 15 +    430880 CTTTAATTTCTTTTA
s panTro4.chr15              17702756 15 -  99548318 CTTTAATTTCTTTTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10040131 15 +  10928107 CTTTAATTTCTTTTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102133093 15 + 121039945 CTTTAATTTCTTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106602168 15 - 170124641 ctttaatttctttta
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107339868 15 - 171882078 CTTTAATTTCTTTTA
i macFas5.chr7              I 323 C 0
s papAnu2.chr7               59633906 15 + 162156779 ctttaatttctttta
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  55167100  9 + 124595110 I
e calJac3.chrY                 214537  1 -   2853901 I
e canFam3.chr30                 38371 18 -  40214260 I
e chlSab2.chr29              21056827 132 -  24206276 I

a score=34133.000000
s hg38.chr15_KI270850v1_alt    179762 16 +    430880 ATTCCTGTTTCACCCC
s panTro4.chr15              17702771 16 -  99548318 ATTCCTGTTTCACCCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10040146 16 +  10928107 ATTCCTGTTTCACCCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102133108 16 + 121039945 ATTCCTGTTTCACCCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106602183 16 - 170124641 attcctgtttcaCTCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107339883 16 - 171882078 ATTCCTGTTTCACTCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59633921 16 + 162156779 attcctgtttcACCCC
i papAnu2.chr7              C 0 C 0
s canFam3.chr30                 38389 16 -  40214260 ACTGCCGCTGCTCCCC
i canFam3.chr30             I 18 C 0
e mm10.chr9                  55167100  9 + 124595110 I
e calJac3.chrY                 214537  1 -   2853901 I
e chlSab2.chr29              21056827 132 -  24206276 I

a score=9500.000000
s hg38.chr15_KI270850v1_alt    179778 3 +    430880 AGC
s panTro4.chr15              17702787 3 -  99548318 AGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10040162 3 +  10928107 AGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102133124 3 + 121039945 AGC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106602199 3 - 170124641 AGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107339899 3 - 171882078 AGC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59633937 3 + 162156779 AGC
i papAnu2.chr7              C 0 C 0
s mm10.chr9                  55167109 3 + 124595110 AGC
i mm10.chr9                 I 9 C 0
s canFam3.chr30                 38405 3 -  40214260 GGC
i canFam3.chr30             C 0 C 0
e calJac3.chrY                 214537 1 -   2853901 I
e chlSab2.chr29              21056827 132 -  24206276 I

a score=331824.000000
s hg38.chr15_KI270850v1_alt    179781 132 +    430880 ACTCCTGTAGCCCCTTCTGTGCCAGAGGTCAGA---G-----TGTCCAGGTCTGTGTCCAGATCACCCTGCCTCATCTTCATTATATACTTAGCACAAAACAGAGCACATTGGGTGCATA-ATGAATCCACA------CTAGGCCTT
s panTro4.chr15              17702790 132 -  99548318 ACTCCTGTAGCCCCTTCTGTGCCAGAGGTCAGA---G-----TGTCCAGGTCTGTGTCCAGATCACCCTGCCTCATCTTCATTATATACTTAGCACAAAACAGAGCACATTGGGTGCATA-ATGAATCCACA------CTAGGGCTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10040165 132 +  10928107 ACTCCTGTAGCCCCTTCTGTGCCAGCGCTCAGA---G-----TGTCCAGGTCTGGGTCCAGATCACCCTGCCTCATCTTCATTATGTACTTAGCACAAAAAAGAGCACATTGGGTGCATA-ACGAATCCACA------CTGGGGCTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102133127 132 + 121039945 ACTCCTGTAGCCCCTTCTGTGCCAGCGGTCAGA---G-----TGTCGAGGTCTGTGTCCAGATGACCCTGCCTCATCTTCATTATGTACTTAGCACAAAACAGAGCACACTGGGTGCATA-ACGAATCCACA------CTGGGGCTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106602202 137 - 170124641 CCTCCTGTAGTCCCTTCTGTGCTAGAGGTCAGA---GTGTCCTGTCCAGGTCTGTGTCCAGATCGCCCTGCCTCATCTTCATTATGTACTTAGCACAAAGCAGAGCACATTGGGTGCATA-ACAAATCCACA------CTGGGGCTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107339902 137 - 171882078 CCTCCTATAGTCCCTTCTGTGCTAGAGGTCAGA---GTGTCCTGTCCAGGTCTGTGTCCAGATCGCCCTGCCTCATCTTCATTATGTACTTAGCACAAAGCAGAGCACATTGGGTGCATA-ACAAATCCACA------CTGGGGCTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59633940 132 + 162156779 CCTCCTGTAGCCCCTTCTGTGCTAGAGGTCAGA---G-----TGTCCAGGTCTGTGTCCAGATCACCCTGCCTCATCTTCATTATGTACTTAGCACAAAACGGAGCACATTGGGTGCATA-ACAAATCCACA------CTGGGGCTT
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 214538 132 -   2853901 ACTCCTGTAGCTCCTTCTGTGCCAGAGGTCAGA---G-----TTTCCAGGTCTGTGTCCAGATGGCTCTGCCTCATCTTCATTATGTACTTAGCATAAAACAGAGTGCATCAGGTGCATA-ACAAATCCATA------CTGGGAGCT
i calJac3.chrY              I 1 C 0
s mm10.chr9                  55167112 111 + 124595110 ACTGCTGCAG--------GGTCCTGAGGTGGGATCCG-----CGGTCAGGGCTGTTTCCTGGCCATCCTG--TCATC-TCATGAAGTACCTACC--------------------TACACACACACATCCACAGACGTGGCGGCCCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38408 114 -  40214260 ACGCCCATAGCTCTTCCTTGGCCGGGGGTTGGA---G-----TGTCTGGGTCTGTGTCCAGGTCACCCCTTCTCATCCTCATTATGTTCTT---------CTGAGCTTATCGGAGGGCTA----AATCCACA------GTA------
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21056827 132 -  24206276 I

a score=1216043.000000
s hg38.chr15_KI270850v1_alt    179913 325 +    430880 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGTATCCTAATTTACGGTTCAACCTTCCT-GTTTCCACTTGCTTCATTGTTCACTTTGGGAAG-----GCTTATTCTTTGCTTCG-TTAACCCATTCTAATCCTGTGTCTTCTTACTTTGTCCTTTGTAAACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTGAAGTGAGTTGCCTTATTAGATCCCATTTGAGTC------------------------------------ACCTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACATTTGTGCACATAGTTTACCTTGTTTATTTCCT
s panTro4.chr15              17702922 323 -  99548318 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTACGGTTCAACCTTCCT-GTTTCCACTTGCTTCATTGTTCACTTTGGGAAG-----GCTTATTCTTTGCTTTG-TTAACCCATTCTAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAAACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTGAAGTGAGT--CCTTATTAGATCCCATATGAGTC------------------------------------ACCTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTATTTCCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10040297 325 +  10928107 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACTTGCTTCGTTGTTCACTTTCGGAAG-----GCTTATTCTTTGCTTCG-TTAACCCATTCTAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAAACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTGAAGTGAGTTGCCTTATTAGATCCCATATGAGTC------------------------------------ACCTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGTTTGCTTCCT
i ponAbe2.chr15_random      C 0 I 1420
s nomLeu3.chr6              102133259 325 + 121039945 AGCTTCATTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACTTGCTTCATTGTTCACTTTGGGAAG-----GCTTATTCTTTGCTTCG-TTAACCCATTCTAATCCTGTATCTTCTTTCTTTGTCCTTTGTAAACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTGAAGTGAGTTGCTTTATTAGATCCCATATGACTC------------------------------------ACCTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTATTTCCG
i nomLeu3.chr6              C 0 I 5
s rheMac3.chr7              106602339 325 - 170124641 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACCTTCTTCATTGATCACTTTGGGAAG-----GCTTATTCTTTGCTTCG-TTAACCCATTCTAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAAACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCCGACCAAGTGAAGTGAGTTGCCTTATTGGATCCCATTTGAGTC------------------------------------ACCTTATACATTGA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTACTTCCT
i rheMac3.chr7              C 0 I 5
s macFas5.chr7              107340039 325 - 171882078 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACCTTCTTCATTGATCACTTTGGGAAG-----GCTTATTCTTTGCTTCG-TTAACCCATTCTAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAAACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCCGACCAAGTGAAGTGAGTTGCCTTATTGGATCCCATTTGAGTC------------------------------------ACCTTATACATTGA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTACTTCCT
i macFas5.chr7              C 0 I 5
s papAnu2.chr7               59634072 325 + 162156779 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACCTTCTTCATTGTTCACTTTGGGAAG-----GCTTATTCTTTGCTTCG-TTAACCCATTCTAATCCtgtgtcttctttctttgtcCTGTGTGAacctgcttctttctctttatctctcttcTTGGTCAGAGATACCCAGAAAATTGTTCCTGACCAAGTGAAGTGAGTTGCcttattagatcccatttgagTC------------------------------------ACCTTAtacattga-aaaaca----ttttaaacaatgaaaaccACACTTGTGCACATAGTTTACCTTGCTTACTTCCT
i papAnu2.chr7              C 0 I 5
s chlSab2.chr29              21056959 325 -  24206276 GGCTTCCTTTTACGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACCTTCTTCATTGATCACTTTGGGAAG-----GCTTATTCTTTGCTTCG-TTAACCCATTCTAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAAACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTGAAGTGAGTTGCCTTATTGGATCCCATTTGAGTT------------------------------------ACCTTATACATTGG-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTACTTCCT
i chlSab2.chr29             I 132 I 5
s calJac3.chrY                 214670 324 -   2853901 GGCTTCCTTTTAAGCATAAAGATTTTTGTTGGATCCTAATTTACTGTTCAACCTTCCTCATTTCCACTTGTTCTGTTGTCCACTTTGGGAAG-----GCTTATTCTTTGCTTTG-TTAACCCATTCTAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAAACTTACTTCTTTCCCTTCATCTCTTTCCTTGGTCAGAGCCACCTAGGAAAC--TTCCTGACCAAGTGATGTAAGGTGCCTTATAAGATCCTATTTGAGTC------------------------------------ACATTATATGTTGA-AAAACA----TTTTAAACAATGAAAACCATACTTGGGCACATAATTTGTCTTGCTTACTGGCT
i calJac3.chrY              C 0 I 5
s mm10.chr9                  55167223 319 + 124595110 TGTTTCCCTTTGAGCACGAGGGCATTTGTTTGAT-CTAATTTAGTGCTTAGCCTTCCTCATGTCTACTT------------------GGAAGGGCTTGCTTGTTCTTTGCTGGACTTAACCCATTCTAATCCTGTTCCTGTTTTCTTAGTCCTCCATAAACCTGCTTCTT---CTTCATGTCTTTTCTTCATCAGAGACACTGAGCTAACTATTCCTG-CCCAGTGAAGTAAGTTGCCTTATCAGCTCCCATCTGAGTC-------------------TTAAAT----ATTGCTTATCTTTTATGTTGAGGAAAAA----CCCTACATAATGAAAAGTATGTTTG----CACAGTTTTCCTTGTTTGCTTCCT
i mm10.chr9                 C 0 I 5
s canFam3.chr30                 38522 351 -  40214260 -----CCTTTTAAATTTAAATTTAAGTTTTTTATCCTAATTTATTACTCAACTTTCCTAATATCTGCTTGTTCCTTTGATAACTTTGGAAAA-----TCTTA--CTCTGCT--G-GTAACCCATTCTAATCCTGTCTCTGCTTTCTTAGTCCTTCATAAACCTGC------CTTTTCATCTCTTTTCCTGGTCAGAGACATCCAGGAAACGGTTCCTAACCAGGTGAAGTAAGTTACCTTATTAGCTCTGGGAAAAGTCTACTCAGTGTTGAACATTCTTAAACCATAATTCCTAAACGTATACATTGA-AAACAATTTTTTTTCAATAATGAAAAACATGTTTGTGAACGTAATTTACCTCGCTGCTTTGCT
i canFam3.chr30             C 0 C 0

a score=4402202.000000
s hg38.chr15_KI270850v1_alt    180238 1275 +    430880 --------TAAA-----CATGCTTACAACACAATTTGGACGTAAACAGGGAAATTT--AC--AGTTATTCT----TTGCAGTTTC-CTAGTGAA---------------TGA--TTATTTT-TTAGACAGACACttaagagcctactaagtatcaagtg-tttc----acaggtttcatttaatctttactattctgggaaagttttcatttctttgttttacagatgagtagactcaaactcaaggaattaga--------tatgatatccaaggtcatct--agATTTCCAGGCTCTGTCTGCTGGATCACATTTGCTTTTGTACTTTTA----ACTATGACTG--GAATATATAATTTTATAATCCATGTGTAACAACACTGCCTGTGTGTGGttttttttctttttttt--ttttGGGTGGCCTCATTAATGCAGTAATGTTCTCTTGTTT--GAAGTTGTAAGTTTCTAAGAAAACAAGGTAGCAGTGCGAAATTGGACAATGTCTGGAACT-TCCT----TCCTCTGCCTTTATTCTTGTTGTT--CCATTAGGTATCAGTTGTAGTGATTATAGCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAATATTTCAAAGAG--------------TTTTTTTAAAA--ATCTGTAAGCTGCAGTTGAGCAGTTACAAACTTTTTT-ATTTCCTACTAGATTGATT-GCAGTAGTCATAACATTATT-GCTGTCTTCTAAGGGCTCTTTAACATAATGCTTATTTACTGAAATGTGTTTTGTAGCTTCATCAGCAATTGAAGTGGTTGATATGTGGACTCTGCAGGTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGCTAAAGTAAAAATTCTCTAGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGATGA--TTTTTTAAAAATTATTCAACTTATTTAGAAGTTAG-TTTTTCTGTACCTGTTAAA-----TTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGGAGCTGCTGGTA-TTTAGTATGGCAGGC--AAACAATTGCCCTTTTCCCTAAC--AGCAGCTTTTTG----TTGTGAATATTCCTGGTGTCCATAAATGTTC------TTGCTTTTTTCATTGCTTGTCTTTGCTCATTGACTTGCCTTTACCTAGAAATGCCGTCTCCTTAAGTCTGTCTGTGCTTCTTAAGGACTTGCCCAAATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGCTCA-CCACTACCCCTAACTTC------TTCCTGGATTTACCTAttta-ggcatcagct-attgactt-ttt--agtataa---
s panTro4.chr15              17703245 1280 -  99548318 --------TAAAGTAAACAATCTTACAATACAATTTGGACTTAAACATGGAGACTT--AC--AGTTATTTT----TTGCAGTTTC-CTAGTGAA---------------TGA--TTATTTT-TTAGACAGATACTTAAGAGCCTACTAAgtatcaagtg-tttt----acaggtttcatttaatctttactattccgggaaagttttcatttccttgttttacagatgagtagactcaaactcaaggaattaga--------tatgatatccaaggtcaTCT--AGATTTCCAGGCTCTGTCTGCTGGATCACATTTCCTTTTGTACTTTTA----ACTATGACTG--GAATATATAATTTTATAATCCATGTGTAACAATACTGCCTGTGTGTGGTTTTTTTTCTTTTTTCT--TTTTGGGTCACCTCATTAATGCAGTAATGTTCTCTTCTTT--GAAGTTGTAAGTTTCTAAGAAAATAAGGTAGCAATGAGAAATTGGACAATGTCTGGAACT-TCCT----TCCTCTGCCTTTATTGTTGTCATT--CCATTAGGTATCAGTTGTAGTGATTATACCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAATATTTCAAAGAG--------------TTTTTAAAAAT--ATCTGTAAGCTGCAGTTGAGCAGTAACAAACTTTTTT-ATTTCCTACTGGATTGATT-GCAGTAGTCATACCATTATT-GATGTCTTCTCAGTGCTCTTTAACATAATGCTTATTTACTGAAATGTGTTTTGTAGCTTCATCAGCAATGGAAGTGGTTGATATGTGGACTCTGCAGATTATATAACCTTCCTAAGCACCCGAATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTCTGTAGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGATGA--TTTTTTAAAAATTATTCAACTTATTTAGAAGTTAG-TTTTTCTGTTCCTATTGAA-----TTGTTTGTTCTGTTTTAGATACTAAAAATAACATTTTCATTCTTTGGAACTGCTGGTA-TTTAGTATGGCAGGC--AAACAATTGCCCTTTTCCCTAAC--ACCAGCTTTTTG----TTGTGAATATTCCTGGGGTCCATAAATGTTC------TTGCTTCTTTCATTGTTTGTCTTTGCTCATTGACTTGCCTTCACCTAGAAATGCCATCTCCTTAAATCTGTCTATGCTTCTTAAGGACTCACCCAAATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGCTCA-CCACTACCCGTAACTTC------ttcctggatttacctattta-ggcatcagct-attgactt-ttt--agtataa---
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10042042 1280 +  10928107 --------TAAA-----TATGCTTACAACACAATTTGGACTTAAACATGGAAATTT--AC--AGTTATTCT----TTGCAGTTTC-CT-GTGAA---------------TTA--TTATTTT-TTAGACAGACACTTAAGAGCCTACCAAgtatcaagtg-tttc----acaggtttcatttaatctttactcttccgggaaggttttcatttctttgttttacagatgagtagactccaactcagggaattaga--------tacgatatccaaggtcatct--agATCTCCAGGCTCTGTCTGCGGGATCACATTTGCTTTTGTACTTTTA----ACTATGACTG--GAACATATAATTTTATAATCCATGTGTAACAACACTGCCTGTGTGTGGTTTTTTTTCTTTTCTTT--TTTGGGGTCGCCTCATTAATGAAGTAATGTTTTCTTGTTT--GAAGTTGTAAGTTTCTAAGAAAACAAGGTAGCAATGAGAAATTGGACAATGTCTGGAACT-TCCT----TCCTCTGCCTTTATTGTTGTCATT--CCATTAGGTATCGGTTGTAGTGATTATACCCTAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAATATTTTAAAGAG--------------TTTTTTTTTTA--ATCTGTAAGCTGCAGTTGAGCAGTAACAAACTTTTTT-ATTTCCTACTGGATTGATT-GCAGTAGTCATAACATTATT-GATGTCTTCTAAGGGCTCTTTAACATAATACTTATTTACTGAAATGTGTTTTGTAGCTTCATCAGCAATTGAAGTGGTTGATGTGTGGACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTCTCTAGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAACTCAAACTAGGATGA--TTTTTTTTTTATTATTCAACTTACTTAGAAGTTAG-TTTTTCTGTTCCTATTTAATTGTTTTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGGAGCTGCTGGTA-TTTAGTATGACAGGC--AAACAATTGCCCTTTTCCCTAAC--ACCAGCTTTTTG----TTGTGAATATTCCTGGTGTCCATAAATGTTC------TTGCTGCTTTCATTGTTTGTCTTTGCTCATTGAATTACCTTCACCTAGAAGTGCCATCTCCTTAAGTCTGTCTATGCTTCTTAAGGACTCGCCCCAATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGCTCA-CCACTACCCCTAACTTC------TTCCTGGATTTACCTATTTA-GGCATCAGCT-ATTGACTTCTTT--AGTATAA---
i ponAbe2.chr15_random      I 1420 C 0
s nomLeu3.chr6              102133589 1264 + 121039945 --------TAAA-----CATGCTTACAATACAATTTGGACTTAAGCATGGAAATTT--GC--AGTTATTCT----TTGTAGTTTC-CTAGTGAA---------------TTA--TTATTTT-TTAGACAGACACttaagcgcctactaagtatcgagtg-tttt----acaggtttcatttaatctttactattccgggaaagttttcatttctttgttttacagatgagtagactcaaactcaaggaattaga--------tatgatatacaaggtcGTCT--AGATTTCCAGGCTCTGTCTGCTGGATCACATGTGCTTTTGTACTTTTA----ACTATGACTG--GAATGTATAATTTTATAATCCGTGTGTAACAGCACTGCCTGTGTGTGGTTTTTTTTCTTTCTTTTGGGGGGGGGTCGCCTCATTAATGCAGTAATGTTCTCTTGTTT--GAAGCTGTAAGTTTCTAAGGAAACAAGACAGCAATGAGAAATTAGACAATG----------TCCT----TCCTCTGCCTTTATTGTTGTCATT--CTGCTAGGTATCAGTTGTAGTGATTATACCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAATATTTCAAAGAG--------------TTTTTAAAAAA--ATGTGTAAGCTGCAGTTGAGCAGTAACAAACTTTTTT-ATTTCCTGCTGGATTTATT-GTAGTAGTTGTACCATTATC-GATGTCTTCTAAGGGCTCTTTAACATAATGCTTATTTACTGAAATGTGTTTTGTAGCTTCATCAGCAATTGAAGTGGTTGATATGTGGACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTGGAGATGCCAGATCAACCGCTACCCATGGGTTAGGTATAGTAAAAATTGTCTAGTGTTCAACAGCTAAAATAAATCGTCTCAAACAAAAGTCAAACTAGGATGA--TTTTTT-TAAATTATTCAACTTATTTAGGAGTTAG-TTTTTCTGTTCCTATTGAA-----TTGTTTGTTCTGTTTTCGATACTAAAAATAACCTTTTCATTCTTTGGAGCTGCTGGTA-TTTAGTATGGCAGGC--AAACAATTGCCCTTTTCCCTAAC--ACCAGCTTCTTG----TT---AATATTCCTGGTGTCCATAAATGTTC------TTGCTTCTTTCATTGCTTGTCTTTGCTCATTGACTTGCCTTCACCTAGAAATGCCATCTCCTTAAGTCTGTCTATGCTTCTTAAGGACTTGCCCAAATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGCTCA-CCACTACCCCTAACTTC------ttcctggatttacctattta-ggcatcagct-attgactt-ttc--agtataa---
i nomLeu3.chr6              I 5 C 0
s rheMac3.chr7              106602669 1285 - 170124641 --------TAAA-----TGTGCTTACAACACAATTAGGACTTAAACATGGAAATTT--AC--AGTTATTCT----TTGCAGTTTC-CTAGTGAA---------------TTA--TTATTTT-TTAGACAGACACTTAAGAGCCTACTAAgtatcaagtg-tttt----gcaggttt-atttgatctttaccattctgggaaagttttcatttctttgttttacagatgagtagactcaaactcagggaattaga--------tgtgatatccaaggtcatct--agATTTCCAGGCTCTGTCTGCTGGATCACATTTGCTTTTGTACTTTTAACTGACTGTGATTG--GAATATATAATTTTATAAGCCATGTGTAACAACACTGCCTGTATGTTTTTTTCTTCTTTTTTTCT--TTTTTGGTAGCCTCATTAATGCATTAATGTTCTCTTGTTT--GAAGTTGTAAGTTTCTAAGAAAACAAGGTAGCAATGAGAAATTGGACAATGTCTGGAACT-TCCT----TCCTCTGTCTTTATTGTTGTCATT--CTACTAGGTATCAGTTGTAGTGATTATACCCCAAGCAATAGTAACTTTCT-----------TATTCTTAAAATAGAGACTCCTGAAAATATTTTAAAGAG--------------TTTTTTTTTTT--ACCTGTAAGCTACAGTTGAGCAGTAACAAACTTTTTT-ATTTCCTTCTGGATTGATT-ACAGTAGTCATAACATTATT-GATGTCTTCTAAGGGCTCTTTAACATAATGCTTATTTACTGAAATGTGTTTTATGGCTTCATCAGCAACTGAAGTGCTGGATATGTGGACTCTGCAGATTAGATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTCTCCAGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGATGA-TTTTTTTTATTATTATTCACGTCATTTAGAAGTTAG-TTTTTCTGTTCCTA---AATTGTTCTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGGAGCTGCTGGTA-TTTAGTATGACAGGC----AAAATTGCCCTTTTCCCTAAC--ACCAGCTTTTTG----TTGTGAATATTCTTGGTGTCCGTAAATGTTC------TTGCTTCTTTCATTGTTTGTCTTTTCTCAATGAATTACCTTCACCTAGAAATGCCATCTCCTTAAGTCTGTCTATGCTTCTTAAGGACTCGCCCAAATGTTATTTCCTGCAAGCGACAGAAATCTCCACTAGGTCA-CCACTACCCCTAACTTC------TTCCTGGGTGTACCTATTTA-GACATCAGTT-ATTGACAT-TTT--AGTATAA---
i rheMac3.chr7              I 5 I 25
s macFas5.chr7              107340369 1285 - 171882078 --------TAAA-----TGTGCTTACAACACAATTAGGACTTAAACATGGAAATTT--AC--AGTTATTCT----TTGCAGTTTC-CTAGTGAA---------------TTA--TTATTTT-TTAGACAGACACTTAAGAACCTACTAAgtatcaagtg-tttt----gcaggttt-atttgatctttaccattctgggaaagttttcatttctttgttttacagatgagtagactcaaactcagggaattaga--------tgtgatatccaaggtcatct--agATTTCCGGGCTCTGTCTGCTGGATCACATTTGCTTTTGTACTTTTAACTGACTGTGATTG--GAATATACAATTTTATAAGCCATGTGTAACAACACTGCCTGTATGtttttttcttctttttttct--tttttGGTAGCCTCATTAATGCATTAATGTTCTCTTGTTT--GAAGTTGTAAGTTTCTAAGAAAACAAGGTAGCAATGAGAAATTGGACAATGTCTGGAACT-TCCT----TCCTCTGCCTATATTGTTGTCATT--CCACTAGTTATCAGTTTTAGTGATTATACCCCAAGCCATAGTAAC-----------------ATTCTTAAAATAGAGACTCCTGAAAATATTTTAAAGAG---------------TTTTTTTTTT--ATCTGTAAGTTACAGTTGAGCAGTAACAAACTTTTTT-ATTTCCTTCTGGATTGATT-ACAGTAGTCATAACATTATT-GATGTCTTCTAAGGGCTCTTTAACATAATGCTTATTTACTGAAATGTGTTTTACGGCTTCATCAGCAACTGAAGTGCTGGATATGTGGACTCTGCAGATTAGATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTCTCCAGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGATGA-TTTTTTTTATTATTATTCACGTCATTTAGAAGTTAG-TTTTTCTGTTCCTATTGAATTGTTTTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGGAGCTGCTAGCA-TTTAGTATGACAGGTAAAAAAAATTGCCCTTTTCCCTAAC--ACCAGCTTTTCA----TTGTTAATATTCCTGGTGTCCATAAATGTTC------TTGCTTCTTTCATTGTTTGTCTTTGCTCATTGAATTACCTTCACCTAGAAATGCCGTCTCCTTAAGTCTGTCTCTGCTTCTTAAGGACTCACCCACGTGTTATCTCCTGCAAGCAACAGAAATCACCACTAGGTCA-CCACTACCCCTAACTTC------TTCCTGGATTTACCTATTTA-GGCCTCTGTT-ATTGACTT-TTT--AGTATAA---
i macFas5.chr7              I 5 C 0
s papAnu2.chr7               59634402 1299 + 162156779 --------TAAA-----CGTGCTTACAATACAATTTGGACTTAAACATGGAAATTT------AGTTATTCG----TTGCAGTTTC-Ctagtgaa---------------tta--ttatttt-ttagacagacaCTTAAGAGCCTACTAAATAtcaaatg-tttt----acagttttcatttaatctttatcattctgggaaagttttcatttctttgttttacgGATCAGTAGACTCAAACTCAGGGAATTAGA--------TGTGATatccaaggtcatct--agatttccAGGCTCTGTCTGCTGGATTACATTTGCTTTTGTACTTTTAACTGACTATCACtg--gaatatataattttataatccaTGTGTAACAACACTGcctgtgtgtggtttttttttctttttc---tttttggtagctTCATTAATGTATTAAGGTTCTCTTGTTT--GAAGTTGTAAGTTTCTAGGAAAACAAGGTAGCAATGAGAAATTGGACAATGTCTGGAAGT-TCCTAGGATCCTCTGCCTTTATTGTTGTCATT--CTGCCAGGTATCAGTAGTAGTCATTATACCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGCctcctgaaaatattttaaagaggttttttctttttttttttttttttaaatctgtaagtggtaggtgagtaataacaaactttttt-atttcctaCTGGGTTGATT-ACAGTAGTCATAACATTATT-GATGTCTTCTAAGGCCTCTTTAACATAATGCTTATTTACTGAAATGTGTTTTGTAGCTTCATCAGCAATTGAAGTGCTGGATATGTGGACTCTGCAGATTAGATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATAGGTCAGATAAAGTAAAAATTCTGTAGTGttcaagagcaaaaataaattgtcttaaa-aaaagtcaaactaggatga---ttttttaaaattattcaacttatttagaagtttg-tttttctgttcctattgaattgttttgtttgttctgttttagaTACTAAAAATAACCTTTTCATTCTTTGGAGCTGCTAGCA-TTTAGTATGACAGGT--AAAAAATTGCCCTTTTCCCTAAC--ACCAGCTTTTTG----TTGTTAATATTCCTGGTGTCCATAAATGTTC------TTGCTTCTTTCATTGTTTGTCTTTGTTCATTGAATTACCTTCACCTAGAAATGCCATCTCCTTAAGTCTGTCTATGCTTCTTAAGGACTCGCCCAAATGTTATCTcctgcaagcaacagaaatctCCACTAGCTCA-CCACTACCCCTAACTTC------TTCCTGGATTTATCTATTTA-GGTATCAGTT-ATTGACTT-TTT--AGTATAA---
i papAnu2.chr7              I 5 C 0
s chlSab2.chr29              21057289 1286 -  24206276 --------TAAA-----TGTGCTTACAACACAATTTGGACTTAAACATGGAAATTG--AC--AGTTATTCT----TTGCAGTTTC-CTAGTGAA---------------TTA--TTATTTT-TTACACAGACACTTAAGAGCCTACTAAgtatcaagtg-tttt----gcaggttt-atttgatctttaccattctgggaaagttttcatttctttgttttacagatgagtaaactcaaactcagggaattaga--------tgtgatatccaaggtcatct--agATTTCCAGGCTCTGTCTGCTGGATCACATTTGCTTTTGTAGTTTTAACTGACTGTGATTG--GAATATATAATTGTATAAGCCATGTGTAACAACACTGCCTGTGTGtttttttcttctttttttct--tttttGGTAGCCTCATTAATGCATTAATGTTCTCTTGTTT--GAAGTTGTAAGTTTCTAAGAAAACAAGGTAGCAACGAGAAATTGGACAATGTCTGGAACT-TCCT----TCCTCTGCCTATATTGTTGTCATT--CCACTAGTTATCAGTTTTAGTGATTATACCCCAAGCCATAGTAAC-----------------ATGCTTAAAATAGAGACTCCTGAAAATATTTTAAAGAG--------------TTTTTTTTTTT--ATCTGTAAGCTACAGTTGAGCAGTAACAAACTTTTTT-ATTTCCTTCTGGATTGATT-ACAGTAGTCATAACATTATT-GATGTCCTCTAAGGGCTCTTTAACATAATGCTTATTTACTGAAATGTGTTTTACAGCTTCATCAGCAACTGAAGTGCTGGATATGTGGACTCTGCAGATTAGATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTCTCCAGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGATGA-TTTTTTTTATTATTATTCAAGTCATTTAGAAGTTAG-TTTTTCTGTTCCTATTGAATTGTTTTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGGAGCTGCTAGCA-TTTAGTATGACAGGTAAAAAAAATTGCCCTTTTCCCTAAC--ACCAGCTTTTTG----TTGTTAATATTCCTGGTGTCCATAAATGTTC------TTGCTTCTTTCATTGTTTGTCTTTGCTCATTGAATTACCTTCACCTAGAAATGCTGTCTCCTTAAGTCTGTCTCTGCTTCTTAAGGACTCACCCACATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGGTCA-CCACTACCCCTAACTTC------ttcctggatttacctattta-ggcctctgtt-gttgactt-ttt--agtataa---
i chlSab2.chr29             I 5 C 0
s calJac3.chrY                 214999 1275 -   2853901 --------CAAA-----TATATTTACAAAACAATCTGGACTTAAACACGGAAATTT--AC--CATTATTCT----TTGCAGTCTC-CTAGTGAA---------------TTATTTTTTTTT-TTAGACAGACACTTAAGAGCCTCCTAAGTATCAAGTGATTCC----ACAGGtttcatttaatctttgccattgtgggaaggttttcctttcttcgttttacacatgggtggactcaaactcagggaattaga--------tactatatccaaggtcaTCTAGAGAGTCCCAGGCTCTGTCTGCTAGATCACATTTGCTTCTGTACTTTTAAGTGAATATGACTG--GAATATACCATTTCATAATCCATGT-TAACAAGACTGCCTGTGTCTGGGTTTTTTCTT---------TTTTCGGTAGCCCCTTTAATGCCTTAATGTTCTCTTGTCT--GAAGCTGTAAGTTTCTCAGAAAAC-AGGTTGCAATGAGAAATTGGACAATGTCTGGAACT-TCCT----TCCTCTCCCTTGAGGGTTGTCATT--CTGCTAGGTATCAGTTGTAGTGATTGTACCTCAAGCCACAGTAAC-----------------TTTCTTATACTAGAGGCTCCTGAAAATATTTTAAAGAC---------------TACTTTTTAA--ATCTGTAAGCTGCAGTCGAGCAGTAACAAAC--TTTC-ATTTCCTACTGGATTGATT-GCAGTAGTCATAACATTATT-CATGTCTTCTAAGGGCCCTTTAACATAATGCTTATTTACTGAAATGTGTTTTGTAGCTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCTACAGGTCAGGTAAAGTATAAATTCCCTAGTGTTCAAGAGCTAAAATAAATTGTCTCAAGCAAAAGTAAAACTAGGATGGGTTTTTCTTTTTATTATTCAACTTATTTAGAAGTTAGCTTTTTTTGTTCCTATTGAATTG--TTGTTTGTTCTGTTTTAGGTACTAAAAATAACCTTTTCATTCTTTGGAGCTGCTGGTA-TTTACTGT-ATAGGC--AAATAATTGCCCTTCTCCCTGCC--ACCACCTTTTCG----TTGTTAATATTCCTGGTTTCCATAAATGCTC------TTGCTTCTTTCA----TTGTCTTTGCTTGTTCAGTTATCTTCACCTGGAAATGCCATCTCCCTAAGTCTGTCAATGCTTTTTAAGGACCAATCCAAACGTTACCTCCTACAAGCAACAGAAATTTCCGCCAGCTCA-CTACCACCACTGACTTC------ATTCTGGATTTACCCATTTA-GGAATCAGTT-ATTTATTT-TTTTAACTATAA---
i calJac3.chrY              I 5 C 0
s mm10.chr9                  55167547 1199 + 124595110 --------TAAA-----TATACCTACAAAA--------ATTTAAA-ATGGAAATTTAAAC--AGCTATTCTAATATGGCAGTTTTGCTAATTTT---------------TTT--TTCTTTTCTTTTGGAGAGGCTTAA----------------------TTTT-------------AATTACTCCTTACTGTCATGAGACAGCCTTCATTTC--TGTTTTGCAGATG-GCAGAGACTAAAGCCAGGGTTTAGG--------T---ATATGCAAGGTTATTT--A---TTCTAGGCTGAGTCTACTAGGCCACAATTGCCT-TATGGTTTTAAATGAATCTGATTGTTGCAAATGTAATTTTATAATCCATATGCAACA-----------------------CTTTCTTTAGT--TTTTTGGTAGTCTTACGAATGCATTAATGTTCTGTTGTTTAAAAAGCTGCAAGTTTCTAAG---ATTAGTTAGCAACTAGACACTAGGCAGTGTCTGACCCT-TCCT----T-CTGTGCCTTT-TTGTTGGTGTTACCTACTAGATACCA--TGCTATAAGGACATACTAAGCTGTAATAACTTTTCTAAAATCGTGATTTTCTTACACCAGCAGCTCT--AACACGTATCAGAGAC--------------TGCTTCC------ATCTATGGGCTGCAGTT-AGCAGGAGC--GCATTTTC-CTTTCCTTCTGGATTGACTAACAGTAGTTGTAGCATTATTCAATGTCGTCTAAGGGCTCTTTAACATAATGCTTATTTACTGAAATATGTTTTGTAGCTCCGTCAGCAATTGAAGTGGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAGGTAAAGTAAACGTTCTCTAGTGTTGAAGAGCTGAACT-CATTGTCTTAATTGAAAGTTAAACTAGGATAA---TTTAAAATTATTATACAGCCTATTTGGAAGTTAG--TTTTGTGTTCCTAGTAAA---------TTGCCTTGCTTTAGGTGCT-AACACAGGCTTTTCATTTCTTGGGGTTGTTTGTATTTTACTGTAATAGGT--GA------GCACTGCTCTCCGAC--CCCTCCATTTTGATTTTTGTTAAAATCA-----------AAATGATTTGTGTGTTTCTTCTTTGACTGGTTGT-TTAGTCAGTTTAGTC-------CTTTGACGTACCATGTCTAAAAGTCTGTCTGTGCTTCTTAAGATGAAATGCAAA-GTTAGCTCTCCCAAGCCATGGAAATTTCCACCAGTTCAGCAATCATCCATGACAT----------TTAGACTTACCTAATTA-GCTATTAGTTAACTGACTT-TTT--ATTACAA---
i mm10.chr9                 I 5 C 0
s canFam3.chr30                 38873 1251 -  40214260 TTGATGAGTAGA-----TATGCTTACAAAACAATCTGGGTGTAAAGATGGGAACTT--AATGAGTTACCCT----TATGGTTTTC-CTAGTGCATCtttttccttttttttt--ttttttt-tttGACAAACGTTTAAGAACCT---AAGGgccaagtg-tttccacagaagattttatttcatctttaccattataaggagtttttaatttccttattttacagatgggaaccctcacactcagggaattagaatgatgccTGCTGTATCCAGGGTCCTTT--AGATTCCAAGAGTCTGTCTACTAGGCCACATTTGCCTC--GACTTTTAAATGAATATGACTG--AAATGTATAATTTTATAACCCATGTGTAACAACACTGCCTCTAT-----------------------TTTTTTGTCACCTCATTAATGTA--AACGTATTCTTGTCT--GAAGTTGTAAGTTACTAAGAAAAGTAGCTAGCAGCTAAAAACTTGACAGCGTCTAGAGCTCCCCT----TCCTCAGTCT---TTGTCGTCATT--CTGCTAGGTGTTAGTTATAGGGATTGTAT-TCAAGCCATAGTCAC-----------------CTTCTTACACTAGCAGCCCCTAACAATATTTCTTAAGG--------------ACGGTTATTTT--ATCTGTGGGCTGGAATTGAGTTGTGACAAACTTTTTTCATTTCCTACTGGATTGGTTTACGGTAGTCATAGCATTATT-CATGTCTTCTAAGGGCTCTTTAACATAATGTTTATTTACCGAAATGTGTTTTGTAGCTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCAATACCCACGGGTCAGGTAAAGTAAAAATTCTCCAGTGTTCAAGAGTTAAA-TAAATTGTCTCGAGCAAAAGTAAAACTAGGATGA-TTTTTCTTCTCACTATACAACTTACTTAGAAGTTAG----------TCTTGTTGAA---------TTGTTTTGTTTTAGATACTAAAAATAACCTGTTTATTCTCTGGAGCTGCTGGTA-TTCACTATGAGGAG---AAACACCTGCCTCCCTCCCCCACTTACCACCTTTTTG----TTGGTACCGCTCCTGATTTCTGTAACCATTC------CTTC----------------------------AGTTACCTTCACCTGGAT-TGCCACCTC--TAAGTCTATCTGTGCTGCTTAAGGCCTGACCCAAG-GTTACTTCT--CTGGCAGCACAAATGCCCACTAGTTTA-CCACCACCTCTAACTTTTCTGGatttccagatttacctatttagggcataattt-attgactt-tgt--actataaata
i canFam3.chr30             C 0 C 0

a score=59889.000000
s hg38.chr15_KI270850v1_alt    181513 18 +    430880 tatgtgagaatttagctc
s panTro4.chr15              17704525 18 -  99548318 tacatgagaatttagctc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10043322 18 +  10928107 TACACGAGAATTTAGCTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102134853 18 + 121039945 tacatgagaatttagctc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341654 18 - 171882078 TACATGAGAATTTAGCTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59635701 18 + 162156779 TACATGAGAATTTGGTTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21058575 18 -  24206276 tacatgagaatttagctc
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 216274 18 -   2853901 TACATGAGACTTTAGCTC
i calJac3.chrY              C 0 I 12
s mm10.chr9                  55168746 18 + 124595110 TAAATGAGGATTTAGCTC
i mm10.chr9                 C 0 I 4
s canFam3.chr30                 40124 18 -  40214260 gatataaggatttaactc
i canFam3.chr30             C 0 C 0
e rheMac3.chr7              106603954 25 - 170124641 I

a score=581421.000000
s hg38.chr15_KI270850v1_alt    181531 185 +    430880 ttataccacccactttccc-----------ttcCTC--------------TTTAGTCATATAAGTAATCACTAATTATCATTAGGACTTT-----GTAAAGCCAAGTTTTGTAGAATATTTAGGATAGGATATTTCTTTCCTTGGTGTTGCTTTTTGTTTTGCAGTGTCTTCCTCATAACAGTAATTTTTAATTTA-AAAAATTCTGTT---GTA-GCCC
s panTro4.chr15              17704543 194 -  99548318 ttataccacccactttgcc-----------ttcctcaGATA----TTATCTTTAGTGATATAAGTAATCACTAATTATCATTAGGACTTC-----GAGAAGCCAAATTTTCTAGAATATTTAGGATAGAATATTTCTTTTCTTGGTGCTGCTTTTTGTTTTGCAATGTCTTC-TCATAACAGtaatttttaattta-aaaaattCTGTT---GTA-GCCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10043340 195 +  10928107 TTATACCACCCACTTTGCC-----------TTCCTCAGATA----TTATCTTTAGTCATATAAGTAATCACTAACTATCATTAGGACTTC-----GTAAAGCCAAGTTTTGTAGAATATTTAGGATAGGATATTTCTTTTCTTGGTACTTCTTTTTGTTTTGCAGTGTCTTCCTCATAATAGtaatttttaattaa-aaaaattCTGTT---GTA-GCCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102134871 195 + 121039945 ttataccacccactttccc-----------gtcctcaaata----ttatctttagtcatataagtactcactaattatcattaggacttt-----gtaaagccaagttttgtagaatatttaggataggatatttcttttcttggtgttgctttttgttttGCAGTGTGTTCCTCATGAGAGTAATTTTTAATTTA-AAAAATTCTGTG---GTA-GCCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106603979 195 - 170124641 TTATACCACCCACTTTCCC-----------TTCCTCAAATA----TTATCCTTAGTCATATAAGTAATCACTAATGATCATTAGGACTTC-----ATAAAGCCAAGTTTTCTAGGATATTTAGTATCTGATCTTTCTTTTCATGGTCCTGCCTTTTGTTTTGCAGTGTCTTCCTCATAATAGTAACTTTTAATTTA-AAAAACTCTGTC---GTA-GCCC
i rheMac3.chr7              I 25 C 0
s macFas5.chr7              107341672 195 - 171882078 TTATACCACCCACTTTCCC-----------TTCCTCAAACA----TTATCTTTAGTCATATAAGTTATCACTAATTGTCATTAGGACTTT-----GTAAAGCCAAGTTTTCTAGAATATTTAGGATAGGATATTTGTTTTCTTGATGGTGTTTTTAGTTTTGCAGTGTCTTCCTCTTAATAGTACTTTTTAATTTA-AAAAATTCGGTT---GTA-GCCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59635719 194 + 162156779 TTATACCACTCACTTTCCC-----------TTCCTCAAATA----TTATCTTTAGTCATATAAGTTATCACTAATTATGATTAGGACTTT-----ATAAAGCCAAGTTTTCTAGAATATTTAGGATAGGATATTTGTTTTCTTggtgctgctttttgttttgca-tGTCTTCCTcataatagtaatttttaaataa-aaaaattctgtt---gtA-GCCT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21058593 195 -  24206276 ttataccacccactttccc-----------ttccccaAATA----TTATCTTTAGTCATGTAAGTAATCACTAATTGTCATTAGGACTTT-----GTAAAGCCAAGTTTTCTAGAATATTTAGGATAGGATATTTGTTTTCTTGATGGTGTTTTTAGTTTTGCAGCGTCTTCCTCTTAATAGTACTTTTTAATTTA-AAAAATTCTGTT---GTA-GCCC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 216304 201 -   2853901 CTTAACCACCCACCTCCCT-----------TTCCTCAAATA----TTATCTTTAGTCATGTAAGTAATCACTAATTATCATTAGGACTTTGTAGAGTAAAGCCAAGTTTTCTAGAATATTTAGGGTAGGATATTTCTCTTTTTGGGTCTGCTTTTTGTTTTGCAGTGTCTTTTTCACAATAGTAATTTTTAATTTACAAAAATTGTGTT---CTA-GCCC
i calJac3.chrY              I 12 C 0
s mm10.chr9                  55168768 180 + 124595110 ATAAACTACCTACTTAACCACCTACTG---CTTCTAAAGCA----TTG--CTTAGTCATGAA------CGATCAGTGCTGTGAGGACTTT-----GGGGAGCCATGTTTTCT-----------GTTATGGCATTTCCATACCTG-TGCATTCTTTTACTTCTCAGGGTTCTTTTTATAGTAATACTTCCCAGTTTA-TAAA----TGTC---ACATGCTC
i mm10.chr9                 I 4 C 0
s canFam3.chr30                 40142 197 -  40214260 tcatgccacgcacattcccacccacttcccttccTAAAACACCATTTATATTTAGTCCTATGAACAATCACTGTTTATCATTAGGACTTT-----GCAGTGTCGAGTTTTCT-----ATTTTGG-----------CATTTCTTATAGAGCTCTTTTGTTTTGCAATGTCCTCCTTATAATAATAATTCTTAATTTA-AAAAGTGTTGCTTgggca-gccc
i canFam3.chr30             C 0 I 206

a score=157085.000000
s hg38.chr15_KI270850v1_alt    181716 44 +    430880 TTTCTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
s panTro4.chr15              17704737 44 -  99548318 TTTCTGTGAGATCTCCTtctcttccaaagcctttggctcctgtg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10043535 44 +  10928107 TTTCTGTGAGATCTCCTtctcttccaaagcctttggctcctgtg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102135066 41 + 121039945 TTTCTGTGAGATCTC---CTCTTCCCAAGCCTTTGGTTCCTCTG
i nomLeu3.chr6              C 0 I 2311
s rheMac3.chr7              106604174 43 - 170124641 TTTCTCTGAGATCTCTTtctcttccaaag-ctttggctcctctg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107341867 43 - 171882078 -TTCTGTGAGATCTCCGtctcttccaaagcctttggctcctctg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59635913 44 + 162156779 TTTCTGTGAGATCTCCTTCTCTTCCAAAGCCTTTGGCTCCTCTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21058788 44 -  24206276 TTCCTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 216505 44 -   2853901 TTTGTGTGAGATCTCCTTCTCTTCCAAAGCCTTTGGCTCCTCTG
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55168948 40 + 124595110 TTTCTGGGA----TCCTCTGTCTATGGAGTCCCTGTCTCTTCTG
i mm10.chr9                 C 0 I 4
s canFam3.chr30                 40545 44 -  40214260 TTCCTGTGAGCTCTTACtctcttccagagccttcggttcttttg
i canFam3.chr30             I 206 C 0

a score=596722.000000
s hg38.chr15_KI270850v1_alt    181760 220 +    430880 tgcccattttggcaggttgttcttcgggttggctgtgcacatgtcatcttgaggtttttctcatctgctcgcctagagtacatccattgtttcctggatcccatgtcatcttctttggctttcccttt-----gtcattttacctgactatgtcctcaagtaaaaccctaa---gaaagcatggagtggtatattttctgatctctagcttctg--aaaaAATACAATCC
s panTro4.chr15              17704781 220 -  99548318 tgcccattttggcaggttgttcttcgggttggctgtgcacatgtcatcttgaggtttttctcatctgctctcctagagtacatccattgtttcctggatcccatgtcatctttcttggctttcccttt-----gtcattttacctgactatgtcctcaagtaaaaccctaa---gaaagcatggagtggtatattttctgatctctggcttctg--aaaaAATACAATGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10043579 220 +  10928107 tgcccattttggcaggttgttctttgggttgactgtgcacatgtcatcttgaggtttttctcatctgttctcctagagtagacccattgtttcctggattccatgtcatctttcttggctttcccttt-----gtcattttacctgactatgtcctcaagtaaaactgaaa---gaaagcatggagtggtatattttctgatctctagcttctg--aaaaAATACAATCC
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106604217 219 - 170124641 tgcccattttggcaggtcgttctttgggttggctgtgcagatgtcatcttgaagtttttctcatctgctctcctag---agatccattgtttcctggatcccatgtcatctttcttggctttcccttt-----gtcattttccctgactgtgtcctccagtaaaacccaaa---ggaagcatagagtggcatattttctgatctctagcttctgaaaaAAAATGCAATGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107341910 220 - 171882078 tgcccattttggcaggtcgttctttgggttggctgtgcagatgtcaccttgaggtttttctcatctgctctcctagagtagatccatagtttcctggatcccatgtcatctttcttggctttcccttt-----gtcattttacctgactatgtcctcaagtaaaaccctaa---gaaagcgtggagtggtatattttctgatctctagcttctg--aaaaAATACAATCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59635957 220 + 162156779 TGCCCATTTTGGCAGATTGTTCTTTGGGTTGGCTGTGCAGATGTCACCTTGAGGTTTTTCTCATCTGCTCTCCCAGAGTAGATCCATAGTTTCCTGGATCCCATGTCATCTTTCTTGGCTTTCCCTTT-----GTCATTTTACCTGACTATGTCCTCAAGTAAAACCCAAA---GGAAGCATGGGGTGGTATATTTTCTGATCTCTAGCTTCTG--AAAAAATACAATCC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21058832 220 -  24206276 tgcccattttggcaggtcgttctttgggttggctgtgcagatgtcaccttgaggtttttctcgtctgttctcctagagtagatccatagtttcctggatcccatgtcatctttcttggctttcccttt-----gtcattttacctgactgtgtcctcaagtaaaaccctaa---gaaagcatggagtgatatattttctgatctctagcttctg--aaaaaatacaatcc
i chlSab2.chr29             C 0 I 1102
s calJac3.chrY                 216549 218 -   2853901 TGCCTGTCTTGGCAGGTTGTGGTTTGGGTGGGCTGTGCAGATatcatcttgaggtttttttgatctgctctcctagagtagatccattctttcctgtatcccatattgtctttcttggc-ttaccttt-----ctcattttgcctgaccacgtcctcaagtaaaacc-tac---gtaagtatggagcagtacattttctgaactctagcttctg--aaaaAATACTGTCC
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55168992 217 + 124595110 AATTAGTCTTTGTGAGTT----CTCGGATGGCCTGTACAGTTGTCACCTTGAGATTTTTCTTTTCTGCTATCCTAGAGCGAATCTATTGATTCCTGGATCTCATGTCATCTCTATTGGCTTTCTTTTTTCTTGTTCGTCTCTATTTATTACACTGTCGGATAAAGGCCGAA---GCATGAA-GGAATGGCATATTTCCTGAG--TTAGCTTTTG--AAAAACCTGGTTC-
i mm10.chr9                 I 4 C 0
s canFam3.chr30                 40589 208 -  40214260 cagcagccttgccaggttgtcctctgggctggctgtgcagctgtcatctggaaatattt---gtctcctccactagtgtggatccactgtcatctg-atctcatgtcctctttctt-gctaacccttt-----ctcattttgcctgagtacatccccaaggaaaatcctagcttgaa-----ggaatagtacattttctgagttctaacattga--aaaATATAT-----
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=1628795.000000
s hg38.chr15_KI270850v1_alt    181980 635 +    430880 AGTGTTTgggttttggagccagtctgagataggtttgaatcttggttctactacttattagctgtatg--------cccttgggcagattccctaattgctctatgcatcaa-tttccatttgcaaaatgggggaaccagtaatag-----tattagtacc-tatgtttctagggagctgtgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcttagCCCAT-CCCCATCACTATTCACTTTTGTCAtagtctaccctcacacttgattgatagtttggttgattatgtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcatggtggtgaggcctcatgtcaccctgagtttcactcattcatgcatgactttctctctggaagcttttaggagtttgtcttttccttggtgagctgaaatagcacaacattgtactt-------------------agtgtgtg-tc---ttttttcattcactg-tgctgggtacaccaaatggataggcctatggatcgtctctttcaaa-gttggaatcttgaatcttg------------------t--catattt---t----tgttaactttctcctttccattt----tatttgttca-ttttgaagtgtctgttaattggatttt
s panTro4.chr15              17705001 635 -  99548318 AGTGTTTgggttttggagccagtctgagataggtttgaatcttggttctactacttcttagctgtatg--------cccttgggctgattccataattgctctatgcatcaa-tttccatttgcaaaatgggggaaccggtaatag-----tattagtacc-tatgtttctagggagctgtgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcttagcaCAT-CTCCATCACTATTCACTTTTGTCAtagtctaccctcacacttcattgatagtttggttgattatatac--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcatggtggtgaagcctcatgtcaccctgagtttcactcatttatgcatgactttctctctggaagcttttaggagtttgtcttttccttggtgagctgaaatagcacaacattgtactt-------------------agtgtgtg-tc---ttttttcattcactg-tgctgggcacactgaatcgataggcctatggataggctctttcaat-gttggaatcttgaatcttg------------------t--catattt---t----tgttaactttctcctttccattt----tatttgttca-ttttgaagtgtctgttaattggatttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10043799 639 +  10928107 AGTGTTTgggttttggagccagtctgagataggtttgaatcttggttctactacttattagcttaaaggaccaactcccttattctactac--taattgctctatgcatcaattttccacttgcaaaatgggggaaccagtaatag-----tattagtact-tatgtttctagggagctatgaggattaaatgagttggta-atggaaaccatttagaacagtgcctggtgcttagcaCAT-CCCCATCACTATTCACTTTTGTCGtagtctaccctcatacttgattgatagtttggttgattttgtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcgtggtggtgaagcctcatgtcaccctgagtttcactcatttatgcgtgactttctctctggaagcttttaggagtt--tctttcccttggtgagttgaaatagcacaacactgtactt-------------------agtgtggg-tc---ttttttcattcattg-tgctgggtacaccgaatggacaggcctatggatcggctccttcaaa-gttggaatcttgaatcttg------------------t--catagtt---t----tgttaactttctcctttccattt----tatttgttca-ttttgaggtgtctgttaattggatttt
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106604436 634 - 170124641 AGTGTTTgaattttggagtcagtc-gagataggtttgaatcttggttctactgcttattagctgtagg--------cccttgggctgagtccctaagtgctctatgcatcagttttccatttgcaaaatggggaagccagcaatag-----tattagtacc-catgtttctagggcgctatgaggattaaatgagttggtacgtgtaaaccatttagaacagtgcctggtgcatagcaCAT-CCCCATCACTATTCACTTTTGTTAtaatctaccctcacacttgattgatagtttggttgattatgtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcatggtggtgaagcttcatatcatcctgagtttcac-catttaggcacgactttctccctggaagcttttaggattttgttttttccttggtgagctgaaatatcacaacattgtactt-------------------agtgtagg-tc---ttttctcattcactg-tgctgggtacaccgaatggataggcctatggataggctctttcaaa-gttggaatcttgaatcttg------------------t--catattt---t----tgttaactttcacctttccattt----tatttgttca-ttttgaggtgtctgttaattgggtttt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107342130 633 - 171882078 AGTGTTTgggttatggagccagtctgagataggtttgaatcttggttctactacttattagctgtatg--------cccttgggctgattccctaagtgctctatgcatcaattttccatttgcaaaatgggggagccagtaatag-----cattagtacc-tatgtttctagggagctatgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcatagcaCAT-CCCCATCACTATTCTCTTTTGTCAtagtctaccctcacacttgatggatagtttggttgattatgtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagttgtggtggtgaagcctcatgtcatcctgagtttcactcatttatacatgacttt----ctggaagcttttaggagtttgtcttttccttggtgagctgaaatagcacaacattgtactt-------------------agtgaggg-tct--ttttttcattcattg-tgctgggtacaccaaatggataggcgtatggatggggtctttcaaa-gatggaatcttgaatcttg------------------t--catattt---t----tgttaactttctcttttccattt----tatttgtttg-ttttgaaatgtctgttaattggatttt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59636177 632 + 162156779 AGTGTTTGGGTTTTGGAGCCAGTCTGAGACAGGTTTGAATCTTGGTTCTACTGCTTATTAGCTGTATG--------CCCTTGGGCTGATTCCCTAATTGCTCTATGCATCAATtttccatttgcaaaatggaggAACCAGTGATAG-----TATTAGTACC-TATGTTTCTAGGGAGCTATGATGATTAAATAAGTTGGTACATGTAAACcatttagaatagtgcctggtgcatagcACAT-CCCCATCACTATTCTCTTTTGTCATAGTCTACCCTCACACTTGATGGATAGTTTGGTTGATTATGTAT--TTCTAGGTTGAGGATAATTTTACCTTAGAATTTCAAA-GTCTGTGCTGTTGTCTTCTAACCAATTGTGGTGGTGGAACCTCATGTCATCCTGAGTTTCACTCATTTATGCATGACTTT----CTGGAAGCTTTTAGGAGTTTGTCTTTTCCTTGGTGAGCTGAAATAGCACAACATTGTACTT-------------------AATGtggg-ta---ttttttcattcattg-tgcTGGGTACACTGAATGGACAGGCCTATGGATAGACTCTTTCAAA-GTTGGAATCTTGAATCTTG------------------t--catattt---t----tgttaactttctcctttccattt----tgtttgttca-ttttgaagtgtctgttaatTGGATTTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21060154 633 -  24206276 AGTGTTTgggttatggagccagtctgagataggtttgaatcttggttctactacttgttacctgtatg--------cccttgggctgattccctaagtgctctatgcatcaattttccatttgcaaaatgggggagccagtaatag-----tattagtacc-tatgtttctagggcgctatgaggattaaatgagttggtacgtgtaaaccatttagaacagtgtctggtgcatagcaCAT-CCCCATCACTATTCTCTTTTGTCAtaatctaccctcacacttgacggatagtttggttgattatgtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctatgctgttgtcttctaacctgttgtggtggtggaacctcatgtcatcctgagtttcactcatttatgcatgacttt----ctggaagcttttaggagtttgtctttcccttggtgagctgaaatagcacaacattgtattt-------------------agtgtggg-tct--ttttttcattcattg-tgctgggtacaccaaatggataggcctatggatggggtctttcaaa-gatggaatcttgaatcttg------------------t--catattt---t----tgttaactttctcttttccattt----tatttgtttg-ttttgaaatgtctgttaattggatttt
i chlSab2.chr29             I 1102 C 0
s calJac3.chrY                 216767 631 -   2853901 AGTGTTTgggttttggagccagtctga------tttgaatcttggttctgctacttagtagctctctg--------cccttgggctgattccctaattgctctgtgcatgaattttccatttgcaaaatggaggaaccagtaatag-----tagtagtacc-tatgtttttagggaactatgaggattaaatgagttggtacatgtaaaccatttaaaacagtgcctggcgcataacacac-tcccatcaatgttCACTTCTGTCAtattctacccgcacactagattgatagtttggttgattatgtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgccttctaacaagtcgtgggggtgaattcttatgccatcctgagtttcacttatttatgcatgactttctctctggaagcttttaggagtttctctttctcttggtgagctgaaatagcacaacaatatactt-------------------agtgtggg------tttttttattcattg-agctgggtacactgaatggataggcctatggataggttcttttaaa-gttggaatcttgaatcttg------------------t--catatttttct----tggtaactttctcctttcacttt----catttgttca-ttttgaagtatctgttaattggatttt
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55169209 544 + 124595110 AGAGTT--GGTGTTAGAACAAGCCCG---------CCCACACTGGTTCCA---------AAATGTGGT--------TCTTGTTGCCATCTTCCTAGT--CTTTGACCAC----TTCTCACTTGTACA---GAGTAGTCGGTCGGAGTGGTTTGTCAGCACTGCAGGTATTCTAAAAGCAGTGCGCAGTG-------CTGTACATGGGAGTTGTGTGG----------------------------CCTCAGTATCAGCTGCTGTTGTGTTCT---CTTTCACTCAGT-----gtttgagtgaata-ataa--atctaggctgaa---atttttgcctaagaatttcaaataactatgctgttgtcttctagccagtggcgtagctgaag-ctgatgccacccggaat--------cttatgtatgatttt-tctttggaagcttcagggaatttgtgctttctttggtg---taatgcactgcagcagtgtcctt-------------------aactcaggatc---ttttctctttcattg-cgctggacgt------tgagtaaggctgt-----gtccctttccaa-atttgagtcttgagttttg------------------gtacatattt---ttgTGTGTTAACTTT-GCTTGTCTATTT----TGTTTG-----TTTTGGA--GTTTATTAACTGGACTTT
i mm10.chr9                 C 0 I 1788
s canFam3.chr30                 40797 636 -  40214260 ----------------ATccagaccactgtaggtttgaatcttggttctgctacgtaatagctgtatg--------atcttgagatgattacctaaccactct--gctttaatatcttgtttgtaaaatgggggag---------a-----tagtagtatc-tctattttgggggagctataaagagtaaatgagttagtacatgtaaatcatttagagcggtgcctggtgtatagtaaatgcccaataaatgttacttgctattAtattttacagtcgtatttgattgatagtttagttgaatatatataattctaggtggaaaataattttccctcagaatttcaaa-gactgtgctgtcgtcttctagccaaaggtggtgtttaagcctaatgccattctaagtcttcctcatctgtgcatgact------cgggagactttaaagaatttgt------cttggtgttctcaaatattgcaatggtatatttttagttgtggctttttttgtgtgcgtg-ttttgcttttgttttcattgttgctggacactcag------------tatggatggttcttttcaaatgttggactcctttatctttctctgggggtaagtgtgct--tgtattc---t---gtgatgactttctcctttccgttttctctatttgttcatttttagaatgcctaccaatgggatttt
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=755938.000000
s hg38.chr15_KI270850v1_alt    182615 348 +    430880 agtcctcttgT-TTGAGTC-TTGTATCTCACGTCATTTCTA----ATTTTTTTTA-AATTTTAAGTTCTGGAATATTTTTCTTATTTTTTGACTTTTAGGAAATTTTATTTGGACAGTCATAACTTTAAGTTTtgttttggttatttattgttgcttaaccaattttcccaaaacttaatggcataaaactacacatttgtctatctgtcactactgtatgggctaactgggggtagctggacagtttttctgctggtctcattt-----ggcatctctcactgtgcggttagacggtgtcagagac---tggtcatctggat---gctcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagacggctgcttcaccc
s panTro4.chr15              17705636 347 -  99548318 agtcctcttgt-ttgagtc-ttgtatctcatgtcatttcta----attttttt-a-aattttaagttctggaatatttttcttattttttgacttttaggaaattttatttggacagtcttaactttaAGTTTtgttttggttatttattgttgcttaaccaattttcccaaaacttaatggcataaaactacacatttgcctgtctgtcactactgtatgggttaactggggctagctggacagtttttctgctggtctcattt-----ggcatctctcactgtgcggttagatggtgtcagggac---tggtcatttggat---tctcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagacggctacttcaccc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10044438 344 +  10928107 agtcctcttgTCTTGAGTC-TTGTATCTCATGTTATTTCTA----ATTTTTTT-A-AATTTTCAGTTCTGGAATATTTTTCTTATCTTTTGACTTTTAGAAAATTTTATTTGGACAGTCATAACTTTAAGTTTtgttttgg----ttattgttgcttaaccaattttcccaaaacttaatggcataaaactacacatttatctatctgtcactactgtatgggttaactggggctaactggacagtttttctgctggtctcattt-----ggcatctctcactgcacagttagacagtgtcagggac---tggtcatctggat---gctcagctgcagtg--------------------------------------------gagtgtct------------------------------------------------------------gagatggcttcttcaccc
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106605070 347 - 170124641 agtcctcttgtcttgcctc-ttgtatctcatgttatttcta----atttttgttt-agttttaagttccggaatatttttcttatctttTGACTTGTAGGAAATGTTATTTGGACAGTCAAAACTTTAAGTTTtgttttggttatttattgttgtttaaccaattttcccaaaacttaatggcgtaaaactacacatttatc--tctgtcactactgtatgggttaactggagatagctggacagtttttctgctggtttcattt-----ggcatctctcactgtgtggttagacggtgtcagggac---tggtcatctggat---gctcaggcgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagccagcttcttcaccc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107342763 350 - 171882078 agtcctcttgTCTTGAGTC-TTGTATCTCACGTTATTTCTA----ATTCTTTTTTAAATTTTAAGTTCTGGAATATTTTTCTTATCTTTTGACTTTTAGGAAATTTTATTTGTATAGTCATAAATTTAAGTTTtgttttggttatttattgttgcttaactaattttcccaacacttaatggcataaaatcacacatttgtctatctgtcactaccgtatgggttaactggggctaactggacagtttttctgctggtctcattt-----ggcatctctcactgtgcagttagatggtgtcagggac---tggtcatctggat---gctcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagatggcttcttcaccc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59636809 342 + 162156779 AGTCCTTTTGTCTTGAGTC-GTGTATCTCacgttatttcta----atttttttta-aattttaagttctggaatattt---ttatcttttgacttttaggaaattttatttggacagtcataactttaagttttgttttggttatttattgttGCTTAACCAATTTTCCCAAAACTTAATGGCATAAAACTACACATTTG----TCTGTCACTACCGTATGGGTTAACTGGGGATAGCTGGACAGTTTTTCTGCTGGTCTCATTT-----GGCATCTCTCACTGTGCAGTTAGATGGTGTCAGGGAC---TGGTCATCTGGAT---GCTCAGCTGCAGTG--------------------------------------------GAGTGTCT------------------------------------------------------------GAGATGGCTTCTTCACCC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21060787 350 -  24206276 agtcctcttgtcttgagtc-ttgtatctcacattatttcta----attcttttttaaattttaagttctggaatatttttcttatcttttgacttttaggaaattttatttgggtagtcataaatttaagttTtgttttggttatttattgttgcttaactaattttcccaacacttaatggcataaaatcacacatttgtctatctgtcagtaccaggtgggttaactggggctagctggacagtttttctgctggtctcattt-----ggcatctctcactgtgcagttagatggtgtcagggac---tggtcatctggat---actcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagatggcttcttcaccc
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 217398 341 -   2853901 agaccacttgTCTTGAGTC-TTGTATCTCatattatttctaaattattattattt-aattttaaaatCTGGAATATTTTTCTTACCTTTCAACTTTT-GGAAATTTTATTTGGACAGTCATAAC--TAAGTTtt---------atatagtgttgcttaaacagttatcccaaaacctaatggcgtaaaacaacacctttgtctatttctcattactctgtgggttaactggaactagctggacagtttttctgctggtgtcatct-----ggcaactctcactgtgcagttagacagtggcagggag---tggccgtctggat---gctcagctgcagtg--------------------------------------------cagtgtct------------------------------------------------------------gatatggcttcttcatcc
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 41433 418 -  40214260 agacctc------tgagtctttgcatcctttattctctctt---------ttttt-AATTTCAAATTCTGGAA----------GTTTTTCAAATTTTAAA-------ATTTGGACAGCATAACCTTTCAG--TTGTTTTAATTATTTACTGCCTCTTAACCAGTTACCCTGA-ACTTAAT----------------TTGTTTTATTTCCTACAATTGTGTGGGCTGATTAGGCTTAGCTCCACAGtttttgttttttttttttttttttCTGCTGGCCACACTGCACAGTCAGATAGTGGCTGGGACCAATGGTCATTTGGACACGACTGCACTGCAGTGTCCAAAATGCTTCTTTACTgggacacctgggtggctcatcagttgagtgtctgcctttgcttaaggtcatgatcccgggtccagggatcgagtaccgtgtcgggctccctgcgaggagcctgcttctccc
i canFam3.chr30             C 0 I 119
e mm10.chr9                  55169753 1788 + 124595110 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=358581.000000
s hg38.chr15_KI270850v1_alt    182963 151 +    430880 acaggtctgctgccttggtgtttcttcttgtggccttctcctctgcatagcgtctcatcctct-------caggcctctttgtgtggtttctctttctccaagaggatagtc--agtactta--ttttggctactagaagcacagaagtgg-agctgccaggt
s panTro4.chr15              17705983 150 -  99548318 acaggtctgctgccttggtgtttcttcatgtggccttcctctctgcatagcatctcatccttt-------caggcctcttcaagtggtttctctttcgccaagaggatagtc--ggtactta--ttttggctactagaagcacagaagtgg-agctgccag-t
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10044782 150 +  10928107 acaggtctgctgccttgctgtttcttcatgtggcctTCCTCTCTGCATAGCATCTCATCCTct-------caggtctcttcatgtggtttctctttctgctagaggataatc--agtactta---attggcttccagaagcacagaagtgg-agctgccaggt
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106605417 151 - 170124641 acaggtctgccgccttggtgtttcttcatgtggccttccaCTCTGCCTAGCATCTCATGCTCT-------AAGGCCTTTTCATGTGGCTTCTCTTTCTCCAAGAAGACAGTC--AGTACTTA--TTTTGGCTTCTAGAAGCACAGAAGTGG-AGCTGCCAGGT
i rheMac3.chr7              C 0 I 824
s macFas5.chr7              107343113 152 - 171882078 acaggtctgctgtcttggtgtttcttcatgtggccttcctctctgcatagcgtctcatcctct-------cgggcctcttcatgtggcttgtctttctccaagaggatagcc--aattgtta-tttttggcttccagaagcacagaagcgg-agctgccaggt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59637151 151 + 162156779 ACAGGTCTGCTGTCTTGGTGTTTCTTCATGTGGCCTTCCTCTCTGCATAGTATCTCATCTTCT-------CAGGCCTCTTCTTGTGGCTTCTGTTTCTCCAAGAGGATAGTC--AGTACTTG--TTTTGGCTTCCAGAAGCACAGAAGCAG-AGCTGCCAGGT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21061137 152 -  24206276 acaggtctgctgtcttggcgtttcttcatgtggccttcctctctgcatagcatctcatgctct-------tgggcctcttcatgtggcttgtctttctccaagaggatagcc--aattgtta-tttttggcttccagaagcacagaagagg-agctgccaggt
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 217739 153 -   2853901 acagggctgctgccttgctgtttcttcatgtggtgcttctctctgcatagcatctcatcctct-------tgggcctcttcatgtggcttctctttctccaggaggatactg--agttctta-tttttgacttccagaagcacagaagtggtagctgcccggt
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 41970 163 -  40214260 ACCTGTCTGGTACCTTGGTATTTCTTCACATAGCCCTTCTTTTCTCCTGACATCTCATCCTCTTCTTGGATAgacctcttcttgtggcttctctttcttcagaaaggtagtccaaattcctaagttttagctgccaagagtgcaaaagtagaagctgtcagcc
i canFam3.chr30             I 119 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=304019.000000
s hg38.chr15_KI270850v1_alt    183114 153 +    430880 gttcttaaggc---ttagacctggaacaggtccagtgtcatttctaccaaattctataggttaaagtgagtcttgaggccaacccagattcactgtg--ggatgggcctgtccagggacatg-ataacaggaggttaggctcattggggaccaactCCC--
s panTro4.chr15              17706133 153 -  99548318 gttcttaaggc---ttagacctggaacaggtccagtgtcatttctaccaaattctataggttaaagtgagtcttgaggccaacccagattcactgtg--ggatgggcctgtccaagaacatg-ataacaggaggtatggctcattggggaccaACTCCC--
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10044932 153 +  10928107 gttcttaaggc---ttagacctggaacaggtccagtgtcatttctaccaaattctgtaggttaaagtgagtcttgaggccaacacagattcactgtg--ggatgggcttgtccaaggatatg-atgacaagaggtgtggctcattggtgaccaACTCCC--
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7              107343265 153 - 171882078 gttctgaaggc---ttagacctggagcaggtccagtgtcatttctaccaaattctctaggttaaagtgagtcttggggccaacccagattcactgtg--ggatgggcctgttcaaggacatg-gtgacaggaggtgtggctcattggggaccaactCCC--
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59637302 153 + 162156779 GTTCTTAAGAC---TTAGACCTGGAACAGGTCCAGTGTCATTTCTACCAAATTCTCTAGGTTAAAGTGAGTCTTGGGGCCAACCCAGATTCACTGTC--GGATGGGCCTGTTCAAAGACATG-GTGACAGGAGTTGTGGCTCATTGGGGACCAACTCCC--
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21061289 152 -  24206276 gttcttaaggc---ttagacctggaa-aggtccagtgtcatttctaccaaattctctaggttaaagtgagtcttggggccaacccagattcactatg--ggatgggcctgttcaaggacatg-gtgacaggaggtgtggctcattggggatcaactCCC--
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 217892 152 -   2853901 gtttttaaggc---ttagacctggaacagg-ccagtgtcatttctaccacattttataggttaaagtgagtcttggggccaacccagattcactgtg--tgatgggcctttccaaggacatg-atgacaggaggtgtggctcattggggaccaACTCCC--
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 42133 157 -  40214260 cttcttaaggcttattagttctggaactggcccagtgtcctttctaccacatttatt--gttaaagccggtcatgtggccagcctagattgactgtggaggaggggaccataaaaggggatgaatgctgggggatgtggttcattggagg--aactctcca
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e rheMac3.chr7              106605568 824 - 170124641 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=196872.000000
s hg38.chr15_KI270850v1_alt    183267 78 +    430880 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccatattcatattctaattttgttttattcatgt
s panTro4.chr15              17706286 78 -  99548318 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccttattcatattctatttttgttttattcttgt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10045085 78 +  10928107 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccttattcatattctatttttgttttattcaggt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102137418 78 + 121039945 agGATGAACCCTGAGttctaagaagtttttctt-ctctgattattccttattcatattctgtttttgttttattcatgt
i nomLeu3.chr6              I 2311 C 0
s macFas5.chr7              107343418 77 - 171882078 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccttattcatattcta-ttttgttttattcatct
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59637455 78 + 162156779 AAGGTGAACCCTGAGTtctaaaaactttttctt-ttctgattattccttattcatattctatttttgttttattcatat
i papAnu2.chr7              C 0 I 498
s chlSab2.chr29              21061441 77 -  24206276 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccttattcatattcta-ttttgttttattcatct
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 218044 75 -   2853901 AAGATGAACTCTGAGGtctaagaaccttttctt----tgactattttttatacatattctatttttgttctatggatgt
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 42290 77 -  40214260 atggtgtaccataAGttctaagaactttttcttgttctaattattctttattcatat--tatttttgatttatagatgt
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e rheMac3.chr7              106605568 824 - 170124641 I

a score=149717.000000
s hg38.chr15_KI270850v1_alt    183345 61 +    430880 aatatattcacaagtgtccttatgaagtgattttgatgctcttttgtctt--ctccctagcat
s panTro4.chr15              17706364 61 -  99548318 aatatattcacaagtgtctttatgaagtgattttgatactcttttgtctt--ctccctagcat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10045163 61 +  10928107 aatatattcacaagtgtctttatgaagtgattttgatactcttttgtctt--ctccctagcat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102137496 61 + 121039945 aatgtattcacaagtgtctttatgaagtgattttgatactcttctgtctt--ctccctagcat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107343495 61 - 171882078 aatacattcagaagtgtctttacaaagtgattttgatactcttttgcctg--ctccctagcgt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59638031 61 + 162156779 aatacattcacaagTGTCTTTATGAAGTGAttttgatactcttttgtttt--ctctctagcat
i papAnu2.chr7              I 498 C 0
s chlSab2.chr29              21061518 61 -  24206276 aatacgttcacaagtgtctttatgaagtgattttgatactcttttgcctg--ctccctagcgt
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 218119 61 -   2853901 aatatattcataaatgtctttaaggagctattttgatactctttggctct--ttccctaacat
i calJac3.chrY              C 0 I 303
s canFam3.chr30                 42367 58 -  40214260 -----aatcataagtgtccttaaggagttactttgatatccttgtcctctccctctctggcat
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e rheMac3.chr7              106605568 824 - 170124641 I

a score=255090.000000
s hg38.chr15_KI270850v1_alt    183406 105 +    430880 --ctctttgttctttaataaattt----------------ttttcttagtttattttggtcttatttttctttttaaaacctttccttaaatatctATTCTATGTTGCTTATCATTTGTAGTC
s panTro4.chr15              17706425 105 -  99548318 --ctctttgttctttaataaattt----------------ttttcttagtttattttggtcttatttttcttcttaaaacctttccttaagtatctATTCTATGTTGCTTATCATTTGTAGTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10045224 105 +  10928107 --ctctttgttctttaataaattt----------------ttttcttagtttattttggtcttatttttctttttaaagcctttccttaaatatctATTCTGTGTTGCTTATCATTTGTAGTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102137557 105 + 121039945 --ctcttttttctttaataaattt----------------gtttcttagtttattttggtcttatttttctttttaaaacctttccttaaatatctTTTCTATGTTGCTTATCATTTGTAGTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107343556 105 - 171882078 --ttctttgttctttaataaattt----------------ttttcttagtttactttggtcttattttactttttaaggcctttccttaaatatctattctatgttgtttatcatTTGTAGTC
i macFas5.chr7              C 0 M 100
s papAnu2.chr7               59638092 105 + 162156779 --ctctttgttctttaatactttt----------------ttttcttagtttattttggtcttatttttctttttaaagccttTCCTTAAATATCTATTCTATGTTGCTTAtcatttgtagtc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21061579 105 -  24206276 --ctctttgttctttaataaattt----------------ttttcttagtttactttggtcttattttactttttaaggcctttccttaaatacctATTCTATGTTGTTTATCATTTGTAGTC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 218483 105 -   2853901 --ctcttttttctttgataaattt----------------atttagtagtctatttatatttatgtatttattttaaagcctttcctcaagtatctgTTCTATGTTGCTCATCATTTGTAGTC
i calJac3.chrY              I 303 C 0
s canFam3.chr30                 42425 116 -  40214260 ctctattttctctttaatacatttaaagagaaatgtattatccccctggtttatct-----ttgtttttctttttgaaa-atttcctcaaatatctattctatgttattcat-atttTTTTTC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e rheMac3.chr7              106605568 824 - 170124641 I

a score=16278.000000
s hg38.chr15_KI270850v1_alt    183511 14 +    430880 tttttt-tttttttt
s panTro4.chr15              17706530  6 -  99548318 tttttt---------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10045329 15 +  10928107 ttttttttttttttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102137662 12 + 121039945 tttttt---tttttt
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59638197 14 + 162156779 tttttt-tttttttt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21061684 14 -  24206276 tttttt-tttttttt
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 218588 14 -   2853901 tttttt-tttttttt
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 42541 14 -  40214260 TTTCTA-TTTCCTTT
i canFam3.chr30             C 0 I 14
e mm10.chr9                  55169753 1788 + 124595110 I
e macFas5.chr7              107343661 100 - 171882078 M
e rheMac3.chr7              106605568 824 - 170124641 I

a score=1365.000000
s hg38.chr15_KI270850v1_alt    183525 1 +    430880 t
s ponAbe2.chr15_random       10045344 1 +  10928107 t
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102137674 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59638211 1 + 162156779 t
i papAnu2.chr7              C 0 I 1
s chlSab2.chr29              21061698 1 -  24206276 t
i chlSab2.chr29             C 0 I 9
s calJac3.chrY                 218602 1 -   2853901 t
i calJac3.chrY              C 0 I 1
e mm10.chr9                  55169753 1788 + 124595110 I
e canFam3.chr30                 42555 14 -  40214260 I
e macFas5.chr7              107343661 100 - 171882078 M
e rheMac3.chr7              106605568 824 - 170124641 I
e panTro4.chr15              17706536 0 -  99548318 C

a score=540734.000000
s hg38.chr15_KI270850v1_alt    183526 282 +    430880 gagacggagtttcgctcttgttgcccaggatggagtgcgatggcgtgatcttggctcaccgcaacctttgcctcctggggtcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccacacctggctaa--tttttgtatttttagtacagaaggggtttctccatgttggtcaggctggtttcgaattcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattaaaggcgtgagccactgtgcctggc
s panTro4.chr15              17706536 282 -  99548318 gagacagagtttcacacttgttgcccaggatggagtgcaatggtgtgatcttggctcaccacaacctttgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccatccctggctaa--tttttgtatttttagtagagaaggggtttctccatgttggtcaggctggtttcgaattcctgacctcatgtgatctgtccaccttggcctcccaaagtgctgggattaaagacgtgagccactgtgcctggc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10045345 280 +  10928107 gagac--agttttgctcttgttgcccaggatgaagtgcagtggcatgatcttggctcactgcaacctttgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccacacccggctaa--tttttgtatttttagtagaaaacggttttctccatgttggtcaagctggtttcgaattcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattaaaggcgtgagccaccatgcctggc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102137675 282 + 121039945 gagacagagtttcgctcttgttgcccaggatggagtgcaatggtgtgatctcggctcactgcaacctttgcctcctgggttcaggcgattctcctgcctcagcctcctgagtagctggaattacaggcatgtgccaccacgcctggctaa--tttttgtatttttagtagagaaggggtttctccatgttggtgaggctggtttcgaattcctggcctcaggtgatccgccaacctcggcctcccaaagtgctgggattaaaggcgtgagccaccgtgcctggc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107343761 267 - 171882078 gagatggagtttcactcttgtttcccagcctggagtgcaatggcatgatcttggctcgccgcaatctttagctcctgggttcaagtgattctcctgcctcagcctcgtaagtagctgagattataggcatgtgccaccaagcccggctaa--tttttgtattt--------------gtttctccatgttggtcaggctggtttcgaattcctgatctcaggggctctgcccaagtcagcctcccaaattgctgggattaaagtcatgaaccactgtg-ctggc
i macFas5.chr7              M 100 C 0
s papAnu2.chr7               59638213 282 + 162156779 gagacagagtgtcgctcttgttgcccaggatggagtgcaatggtgtgatcttggctcactgcaaactttgcctcatgggttcaagcaattctcctgcctcagcctcctgattagctgggattacaggcatgtgccactatgcccagctaa--tttttgtatttttagtggagaaggggtttctccatgttagtcaggctggttttgaattcctgatctcaggtgatctgcccaccttggcctcccaaagtgctgggattaaaggcatgagccaccatgcccagc
i papAnu2.chr7              I 1 C 0
s chlSab2.chr29              21061708 267 -  24206276 gagatggagtttcactcttgtttcccagcctggagtgcaatggcatgatcttggctcgccgcaatctttagctcctgggttcaagcgattctcctgcctcagcctcataagtagctgagattataggcgtgtgccaccaagcccggctaa--tttttgtattt--------------gtttctccatgttggtcaggctggttttgaattcctgacctcaggggctctgcccaagtcagcctcccaaattgctgggattaaagtcatgaaccactgtg-ctggc
i chlSab2.chr29             I 9 C 0
s calJac3.chrY                 218604 276 -   2853901 gagatggagtcttgctc-tgtcacccaggctggagtacagtggtgtgatactggcttgctacaacttctccctcctgggttcaagcagttct-ctgcctcagcctcctgtgtagctgggattacaggcacccactaccatgcccagcttatttttttgtatttttagtagagacggggttt---catcttgtccaggctggtcttgagtgcctgagctt--gtgatccacccttctcggcctccc-aagtgctggtattacagtcatgaactaccacgcccagc
i calJac3.chrY              I 1 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e canFam3.chr30                 42555  14 -  40214260 I
e rheMac3.chr7              106605568 824 - 170124641 I

a score=875816.000000
s hg38.chr15_KI270850v1_alt    183808 364 +    430880 cTGTATTCTTTTTTT---TTT--TTAAATTCCCTTTTTTGTTCATTCATATTTGAGAGAGGTACTGAAAGAC----TGGGAggctgggtgtggtggctcacacctacaatctcagtgctttcggagattgacgtgggaggatcacttgagcccaggagctcaagagtag---tttgggcaatattatg-----agaccccatctttac----------aaaaaataaattaaaaaaaaaaaagccaggtgtggtgacacccacctgtagtcccagctacttgggaggctgaggcaggaggatcgcttgagcccaggatgttgaggctaaagtgagttgtgatcatgctgctgcattcctgcattccagcctgggtgaaagagcaagatcct
s panTro4.chr15              17706818 352 -  99548318 ATGTATTCTTTGTTT---TTT-----AATTCTCTTTTTTGTTCATTCATATTTGAGAGAGGTACTAAAAGAC----TGGGAggctgggagtggtggctcatacctacaatctcagtgctttgggagactgacgtgagaggatcacttgagcccaggagctcaagactag---tttgggcaatattgtg-----agaccccatcttta-----------aaaaaataaattaaaaaaaata--gccaggtgtggtgac------ctgtagccccaactatttgggaggctgaggcaggaggatcgcttgagcccaggatgttgaggctaaagtgagttgtgatgatgctgctgcattcctgcattccagcctgggtgaaggagcaagatcct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10045625 363 +  10928107 cTATATTCTTTTTTT---TTTTTTTTAATTCCCTTTTTTGTTCTTTCATATTTGAGAGAGGTACTAAAAGAC----TGGGAggctgggtgtggtgactcacacctacaatctcagtgctttgggagactgatgtgggaggatcaattgagcccgggagctcaagactag---tttgggcaacatagtg-----agaccccatctttac----------aaaaaataaa-taaaaaaaata--gccaagtgtggtgacacccatctgtagtaccagctacttgggaggctgaggcaggaggatcacttgagcccgggatgttgaggctgaagtgagctgtgatcatgctgctgcattcctgcattccagcctgggtgaaagagcaagaccct
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102137957 370 + 121039945 cTGTATTCTTTTTTT---TTT---TTTATTCCCTTTTTTATTCATTCATATTTGAGAGAGGTACTAAAAGAC----TGGGAggctgggtgtggtggctcacacctacaatctcagtgctttgggagactgacgtgggaggatcacttgagcccaggagctcaagactag---tttgggcaatactatg-----agaccccatctttacaataaataaaaaaaaataaa-aataaaaaaaa--gccaggtgtggtgacacccacctgtagtcctggctacttgggaggctgaggcaggaggattgcttgagcccaggatgttgaggctaaagtgagttgtgatcatgctgctgcattcctgcattccagcctgggtgaaagagcaagatcct
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106606392 357 - 170124641 CTGTATTCTTTTTTTTTATTA---TTAATTCCTTTTTTTGTTCATTCATATTTCAGAGAGGTACTAAAAGAC----TGGGAggctgggtgtgtcagctcccacctacaatctcagtgctttgggagactgactttggaggatcacttgagcccaggagctcaaggctag---tttgggcaatgttgtg-----agacctgatctttac----------aaaaaattaa-tgaaaataata--gccaggtgtggtgatacacacctatagccccagctacttgg------gaggcagaaggacctcttgagcccgggatgttgaggctgaagtgagctgtgatcatcctgctgcattcctgcattccagcctgggtaaaaaagcaagaccct
i rheMac3.chr7              I 824 C 0
s macFas5.chr7              107344028 359 - 171882078 cTGTATTCTCTTTTT---TTT---TTAATTCCCCTTTTTGTTTATTCATATATGAGAGAAGTACTAAAAGAC----TGGGACgctgggtgtggtggctcacacctacaatctcagtgctttgggagactgatgtgggaggatcacttgagcccaggaactcaagactaa---tttaggcaacatcatg-----agaccccatctttat-----------gaaaataaa-ttttaaaaata--gccaggtgtggtgacacccacctgtaggcccagctacttgggaggctgaggcaggaggatctcttgagcccaggatgttgaggctgaagtgagctgtgatcattccactgcattcctgcattccagcctaggtgaaagagcaagactct
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59638495 355 + 162156779 ctgtattccTTTTTG----------TAATTCCCTTTCTTGTTCATTCATATTTGGGAGAGGTACTAAAAGAc----tgagaggctgggtgtggtggctcacacctacaatctcagtgctttgggagactgatgt-ggaggatcacttgagcccaggagctcaagactag---tttgggcaacatagtg-----agaccctatctttac----------aaaaaataaa-taaataaaata--gccaggtgtggtgacacccacctgtagtcccagctatttgggaggctgaggcagaaggatcgcttgagcctgggatgttaaggctgaagtgagctgtgatcatcccactgcattcctgcattccagcctgggtgaaagagcaaggccct
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21061975 358 -  24206276 cTGTATTCTCTTTTC----TT---TAAATTCCCCTTTTTGTTTATTCATATATGAGAGAAGTACTAAAAGAC----TGGGACgctgggtgtggtggctcacacctacaatctcagtgctttgggagactgatgtgggaggatcacttgagcccaggaactcaagactaa---tttaggcaacatcatg-----agaccccgtctttat-----------gaaaataaa-taaaaaaaata--gccaggtgtggtgatacccacctataggcccagctacttgggaggctgaggcaggaggatctcttgagcccaggatgttgaggctgaagtgagctgtgatcattccactgcattcctgcatcccagcctaggtgaaagagcaagaccct
i chlSab2.chr29             C 0 I 349
s calJac3.chrY                 218880 333 -   2853901 ---cATTTGTATTCT---TTT-----AATTCCCTTTTTTG----TTCATATTTGAGAGAAGTACTAAAAGACTGATTGGGAggctgggtgtggtggctcacatttataatctcagtgctttgggaggcgg----gggaggatcttttgagcctaggagtttaagaccagcctttaagttaagcctttgagttcagacctcatctttac----------aaaaaataaa------aaatta--gctggatatggtggcacctgcctgtagtcccagctactcaagaggctgaggcaggaggatcacttgagccagg-------------aggtgagctgtgatcatgccagtgtact--------gcagcctgggtgacagagtggaagact
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e canFam3.chr30                 42555  14 -  40214260 I

a score=8804.000000
s hg38.chr15_KI270850v1_alt    184172 5 +    430880 ttctc
s panTro4.chr15              17707170 5 -  99548318 ttctc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10045988 5 +  10928107 gtctc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102138327 5 + 121039945 ttctc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106606749 5 - 170124641 gtctc
i rheMac3.chr7              C 0 I 2
s macFas5.chr7              107344387 5 - 171882078 gcctc
i macFas5.chr7              C 0 I 3
s papAnu2.chr7               59638850 5 + 162156779 gcctc
i papAnu2.chr7              C 0 I 3
s calJac3.chrY                 219213 5 -   2853901 gtctc
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e canFam3.chr30                 42555 14 -  40214260 I
e chlSab2.chr29              21062333 349 -  24206276 I

a score=18790.000000
s hg38.chr15_KI270850v1_alt    184177 32 +    430880 aaataaataaataaataaataaaa--------taaata-------------ca
s panTro4.chr15              17707175 30 -  99548318 aaataaataaataaataaataaa---------taaata--------------a
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10045993 44 +  10928107 aaataaataaataaataaataaa---------taaataaataaataaaataca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102138332 20 + 121039945 aaataaata-----------aaa---------taaata-------------ca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106606756 40 - 170124641 aaataaaTAACtatataaattaattaattaaataaata-------------ca
i rheMac3.chr7              I 2 C 0
s macFas5.chr7              107344395 32 - 171882078 aaataaataaataaataaataaat--------aaaata-------------ca
i macFas5.chr7              I 3 C 0
s papAnu2.chr7               59638858 24 + 162156779 aaataaataaataaaa----------------taaata-------------ca
i papAnu2.chr7              I 3 C 0
s chlSab2.chr29              21062682 32 -  24206276 aaaTaaataaataaaataaaaaaa--------aaaata-------------ca
i chlSab2.chr29             I 349 C 0
s calJac3.chrY                 219218  1 -   2853901 ----------------------------------------------------a
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e canFam3.chr30                 42555 14 -  40214260 I

a score=29382.000000
s hg38.chr15_KI270850v1_alt    184209 11 +    430880 aataaaaa-----aat
s panTro4.chr15              17707205 16 -  99548318 aataaaaattaaaaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10046037 16 +  10928107 aataaaaaataaaaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102138352 16 + 121039945 aataaaaaaTAAAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106606796 16 - 170124641 aataaaaaataaaagt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107344427 16 - 171882078 aataaaaaataaaAAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59638882 16 + 162156779 aataaaaaataaaaat
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21062714 16 -  24206276 aataaaaaataaaaac
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 219219 16 -   2853901 aaaaaaaaaaaaaaaa
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 42569 11 -  40214260 agtgaggtact-----
i canFam3.chr30             I 14 C 0
e mm10.chr9                  55169753 1788 + 124595110 I

a score=463351.000000
s hg38.chr15_KI270850v1_alt    184220 135 +    430880 aaaGAATTGATTGGGAGTTCTGCATGGCGAAGACTTGGCAACTGATAGCTTTTAGGGGGGAATGTATGCTGATTCCTAATTGT--------TATCCTCTACCCCTCTATCT-------TATCTCCCAGTGCAATCATAAATGATGGCTGG
s panTro4.chr15              17707221 135 -  99548318 aaaaaaTTGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAGAGGGGAACATATGCTGATTCCTAATTGT--------CATCCTCTACCCCTCTATCT-------TATCTCCCGGTGCAATCATAAATGATGGCTGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10046053 133 +  10928107 aaaaaaTTGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAG-GGGGAATGTATGCTGATTCCTAATTGT--------TATCCTCTA-CCCTCTATCT-------TATCTCCCGGTGCAATCATAAATGATGGCTGG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102138368 135 + 121039945 AAAAAATTGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAGGGGGGAATGTATGCTGATTCCTAATTGC--------TATCCTCTACCCCTCTATCT-------TATCTCCCAGTGCAATCATAAATGATGGCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106606812 134 - 170124641 aaaaaattGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAG-GGGGAACGTACGGTGATTCCTGATTAT--------TTTCCTCTACCCCTCTTTCT-------TATCTCCCGGTGCAATCATAAATGATGGCTGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107344443 134 - 171882078 AGAAAATCGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAG-GGGGAATGTATGCCGATTCCTAATTGT--------TATCCTCTACCCCTCTATCT-------TATCTCCCGTTGCAATCATAAATGATGGCTGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59638898 134 + 162156779 aaaaaatcgaTTAGGAGTTCTTCATGGCCAATACTTGGCAACTGATTGCTTTTAG-GGGGAATATATGCTGATTCCTGATTGT--------TATCCTCTACCCCTCTATCT-------TATCTCCCAGTGCAATCATAAATGATGGCTGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21062730 134 -  24206276 aaaaaaTTGATTGGGAGTTCTTCATGGCCACGACTTGGCAACCGATAGCTTTTAG-GGGGAATGTATGCTGATTCCCAATTGT--------TATCCTCTAACCCTCTATCT-------TATTTCCTGGTGCAATCATAAATGATGGCTGG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 219235 146 -   2853901 aaTAGACTGATTGGGAGTTCTCTGTGGCCAAGACTTGTCAACTGATAGCTTTTAG-GGGGAATTTAGGCTGATTCCCAATTGTTATTCCCCTATTCCCCACCCCTCTATCTTATCTCCTATCTCCTGGTGTAGTCGTAA---ATGTCTGG
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55171541 127 + 124595110 AAATAAATGATGTGGAGTTCCTTGTAGCCAACACTTGTCACCTGATAGC-TTTAG-GGGGAGTTTATGTTGATTCCCAACCAC--------TCTTCCC---CCTACTTTTC-------CACTTGTTAGTACAGG-GTAAAAGATGGCT--
i mm10.chr9                 I 1788 C 0
s canFam3.chr30                 42580 129 -  40214260 gaaaagataattgagagttctttgtggccaagacttgtcaactAATAGTGTTTAG-GAGGAATTTAAGCTGACTTCCAGCTGC--------TGTCCCCTACCCCCCTGTTC-------TGT-----GGTGTAATAATAAATGGAGGCTGG
i canFam3.chr30             C 0 C 0

a score=390145.000000
s hg38.chr15_KI270850v1_alt    184355 258 +    430880 AACTACTCCATTCCTCTGGAGGTGAAA-TCTACATTCTCTTGTCTGAGGTAGAT--ATGTTTGCTTGGGTTCTGCTTAAGGAGAT-GGAGGAGAGCAGTGTGTTTCAGGGCCTGGAAAAGGTGTTCTCTATATAGGCTTTTGGTTAAtctct-gttttcagtcttgcctgtcagtcccactctcgggggtacctggtgtc-t--gagtctagaacctt----tccaggttgctgtgggacaaattagcttccttgtttttggtatccccc
s panTro4.chr15              17707356 256 -  99548318 AACTACTCCATTCCTCTGGAGGTGAAA-TCTACATTCTCTTGCCTGAGGTGGAT--ATGTTTGCTTGGATTCTGCTTAAGGAGAT-GGAGGAGAGCAGTGTGTTTCAGGGCCTGGAAAA--TGTTCTCTATATAGGCTTTTGGTTGAtctct-gttttcagtcttgcctatcagtcccactctcgggggtacctggtgtc-t--gagtctagaacctt----tccaggttgctgtgggacaaattagcttccttcttattggtatccccc
i panTro4.chr15             C 0 I 1
s ponAbe2.chr15_random       10046186 259 +  10928107 AACTACTCCATTCCTCTGGAGGTGAAA-TCTACATTCTCTTGCCTGAGGTAGAT--ATGTTTGCTTGGGTTCTGCTTCAGGAGATGGGGGGAGAGCAGTGTGTTTCAGGACCTGGAAAATGTGTTCTCTATATAGGCTTTTGGTTAACctct-gttttcagtcttgcctatcagtcccactctcgggggtacctggtgtc-t--gagtccagaacctt----tccaggttgctgtgggacaaattagcttccttgttatcggtatccccc
i ponAbe2.chr15_random      C 0 I 1
s nomLeu3.chr6              102138503 257 + 121039945 AACTACTCCATTCCTCTGGAGGTGAAA-TCTACATTCTCTTGTCTGAGGTAGAT--CTGTTTGCTTGGGTTCTGCTTAAGGAGAT-GGAGGAGAGCAGTGTGTTTCAGGG-CTGGAAAATGTGTCCTCTATataggcttttggctaatctcc-gttttcagtcttgcctgtcagtcccactctcgggggtccctggtgtc-t--gagtctagaacctt----tccaggttgctgtgggacaaattagcttccttgttattggtatccccc
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59639032 258 + 162156779 AACTACTCCTTTCCTCTGGAGGTGAAA-TCTACATTCTCTTGTCTGAGGTAGAT--AAGTTTGCTTGGGTTCTGCTTAAGGAGAT-GGGGGAGAGTAGTGTGTTTCAGGGCCTGGAAAATGTGTTCTGTATATAGGCTTTTTGTTAATCTCT-GTTTTCAGTCTTGCCTATCAGTCCCACTCTCGGGGATACCTGGTGTC-T--GAGTCTAGAACTTT----TCCAGGTTGCTGTGGGACAAATTAGCCTACTTGTAATTGGTATCCCTG
i papAnu2.chr7              C 0 I 1
s calJac3.chrY                 219381 260 -   2853901 AACTACTCCATTCCTCTGGAGATGAAA-CCTGTGTTCTCTTGCCTGAGGTAGATACATGTTTGCTTGGGTTGTGCTTAAGGAGAT-GTGGGAGAGCAGTGTGTTTCAGGGCCTGGAAAATGTGTTCTGTATATAGGCTTTTGGTTAATCTCC-ATTTTCAGTCTTGCCTATCGATCCCATTCTCGGGGGTACCTGGTGTCTT--GAGTCTAGAGCCTC----TCCAGGGTGTTGTGAGACAAATTTGTTTCCTTGTTATTGGTACCCCC-
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55171668 239 + 124595110 ------CCAGTTTCTCTGCAGATGACA----------TTTTGTCTGA--CAGAT--AA--TCTCCTGGGTTCTACTTAAGGAGGT--GGGGAATGCAGAGCATTTGAGGG-CTGTGTGGTGTGTGTTGCAGGCAGGCTTTTGGTTAGTCTGTAGGTTTCCATCCTGCCTGCTGCTCCTGTTGC--AGTGTATTTGGTGTCTT--GAGTCTGGAGCCTCTGAATTGAGGGTGCTTTTTG-CAGATCT-CTCCTTGGTCACTGCTGTCTCCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42709 232 -  40214260 AACTACTTGGTTTCTTTGGACACGACATTTTATAATCTCCTGTTTGAGGTAAAT--ATGTCTGCCTAGGTGCTGTGTAAGGACAC-AGGGGAAAGCATTGTGTTTCAGGGACTGGACA---TGTTCTGTGTTTTGGCTTTTGGTTGATCTGT-AAT------------------TCCTGCTGTCTCGTGTACCCAGTGTC-TTGGAGTCTAGAGGCTC----TCTAGGGTGCTGTGGGGCAGATTTGCCTCCT-------GTAATCCCT-
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21062864   0 -  24206276 C
e macFas5.chr7              107344577   0 - 171882078 C
e rheMac3.chr7              106606946   0 - 170124641 C

a score=1628976.000000
s hg38.chr15_KI270850v1_alt    184613 519 +    430880 aacctccacttttgtttgc-ttgctccattaattaaccattttccatttactgtcattttctaatggaggtgaa--ttctcttctgtgg------gtaaccccatttcttttttttg---taattgtttgtttatatattgtttattcttc---actgtatttctagtggagcctcaggacaaagagcagatggtggaa-----atatgtgttc------aGTGTTCAG-TTTTTTT-CTGTAAGACATCTGCAACTTGTGTTTTTCACTG---AATATCACGTGGACTTAATGCATATAGAGCTACCTTGTTTTTCTTGATTGTGCCT---ACAATTCTATGGAGA---AATATAATTTGTGAATTACCTGATGAAATTTTCCTAATTTTGAA-TCATCC-TTGCATTCCT-ATAATAAACACT---------------------GTTAGAATGGCTATGGTAATATTTTATTTTTGCATTTTTACTTCTTTATAAAA---TAAGATT-----ATAGTTTTGTTTGT----TTCTTTTAAGG---CTCTTATTTCA-----GTATCAAGGGTATGCAG-------GGCTAACTCGGGAAGCTTTAC
s panTro4.chr15              17707613 522 -  99548318 gacctccacttttgtttgc-tggctccattaattaaccattttccatttactgtcattttctaatggaggtgaa--ttctcttctgtgg------gtaaccccatttcttttttttg---taattgtgtgtttatataatgtttattcttc---actgtatttctagtggagcctcaggacaaagagcagatggtggaa-----atatgtgttc------agtGTTCAG-TTTTTTTTCTGTAAGAC---TGCAACTTGTGTTTTTCACTG---AATATCACATGGACCTAATGCATATAGAGCTACCTTGTTTTTCATGATTGTGCCT---ACAATTCTATGGTGA---AATATAATTTgtgaattacctgatgagattttcctaattttgaa-tcatcc-ttgcattcct-ataataaacACT---------------------GTTAGAATGGCTATGTTAATATTTTATTTTTGCATTTTTACTTCTGTATAAAA---TAAGATT-----ATAGTTTTGTTTGT----TTCTTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGCATGCAG-------GGCTAACTCGGGAAGCTTTAC
i panTro4.chr15             I 1 C 0
s ponAbe2.chr15_random       10046446 524 +  10928107 GACCTCCACTTTTGTTTGC-TTTCTCCATTAATTAACCATTTTCCATTTACTGTCATTTTCTAATGGAGGTGAA--TTCTCTTCTATGG------GTAACCCGATTTCTTTTTTTTG---TAATTGTGTGTTTATATAATGTTTATTCTTC---ACTGTATTTCTAGTGGAGCCTCAGGACAAAGAGCAGATGGTGGAA-----ATATGTTTTC------AGTGTTCAG-TTTTTTT-CTGTAAGACATCTGCAACTTGTGTTTTTCACTG---AATATCACGTGGACTTAATGCATATAGAGCTGCCTTGTTTTTCATGATTGTGCCT---ACAGTTCTATGGAGA---AATATAATTTGTGAATTACCTGATGAAATTTTCCTAATTTTGAA-TCATTC-TGGCATTCCT-ATAAtaaacact---------------------gttagaatggctatggtaatattttagttttgcatttttacttctgtattaaa---taagatt-----atagttttgtttgt----ttcctttaagg---ctcttatttcatttcagtatcaagggtatgcag-------ggctaacttgggaagctttac
i ponAbe2.chr15_random      I 1 C 0
s nomLeu3.chr6              102138760 524 + 121039945 aacctccacttttgtttgc-ttgctccattaattaaccattttccatttactgtcattttctaatggaagtaaa--ttctcttctgttg------gtaaccccatttcttttttttg---taattgtgtgtttatataatgtttattcttc---actgtatttctagcagagcctcaggaaaaagagcagatggtggaa-----atatgtgttc------agtGTTCAG-TTTTTTT-CTGTAAGACATCTGCAACTTGTATTTTTCACTG---AATATCACATGGACTTAATGCATATAGAGCTACCTTGCTTTTCATGATTGTGCCT---ACAATTCCATGGAGA---AATATAATTTgtgaattacctgatgaaattttcctaattttgaa-tcatcc-ttgcattcct-ataataaacact---------------------gttagaatggctatggtaatattttacttttgcatttttacttctgtattaaa---taagatt-----atagttttgtttcc----ttcctttaagg---ctcttatttcatttcagtatcaagggtatgcag-------ggctaacttgggaagctttac
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106606946 517 - 170124641 AACCTCCACTTTTGTTTGCTTTGCTCCATTAATTAACCATTTTCCATTTACTGTCATCGTCTCATGAAGGTGAA-----TCTTCTGTTG------GTAATCCCATT---TTTTTTTG---TAATTGTGTATTTATATAATGTTTCTTCTTC---ACTGTATTTCTAGTGGAGCCTCAGGACAAAGAGCAGATGGTGGAA-----ATACGTGTTC------AGTGTTCAG--TTTTTT-CTGTAAGACttctgcaacttgtgtttttcactg---aatagcacacggacttaatgcatatagagctaccttgtttttcctgattgtgcct---acaattctatggaga---aatataATTTGTGAATTACCTGATGAAATTTTCCTAATTTTGAA-TCATCA-TCACATTCCT-ATAA-AAAAACT---------------------GTTAGAACGGCTATAGTAATATTTTATTTTTGCGTTTTTACTTCTGTATTAAA---GAAGATT-----AAGGTTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGTGTGCAG-------GGCTAACTTGGGAAGCTTTAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107344577 519 - 171882078 AACCTCCACTTTTGTTTGCTTTGCTCCATTAATTAACCATTTTCCATTTACTGTCATTGTCTAATGAAGGTGAA--TTCTCTTCTGTTG------GTAATCCTATTTC-TTTTTTTG---TAATTGTGTGTTTAT---ATGTTTCTTCTTC---ACTGTATTTCTAGTGGAGCCTTAGGACAAAGAGCAGATGGTGGAA-----ATATGTGTTC------AGTGTTCAG--TTTTTT-CTGTAAGACTTCTGCAACTTGTGTTTTTCACTG---AATAGCACACGGACTTAATGCATATAGAGCTACCTTGTTTTTCCTGATTGTGCCT---ACAATTCTATGGAGA---AATATAATTTGTGAATTACCTGATGAAATTTTCCTAATTTTGAA-TCATCA-TCACATTCCT-ATAA-AAAAACT---------------------GTTAGAACGGCTATAGTAATATTTTATTTTTGCGTTCTTACTTCTGTATTAAA---GAAGATT-----AAGGTTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGTGTGCAG-------GGCTAACTTGGGAAGCTTTAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59639291 518 + 162156779 GACCTccacttttgtttgctttgctctATTAATTAACCATTTTCCATTTACTGTCGTTGTCTAATGGAGGTGAA--TTATCTTCTGTTG------GTAACCCTATCCcttttttttg---taattgtgtgTTTATATAATGTTTCTTCTTC---AATGTATTTCTAGTGGAGCCTCAGGGCAAAGAGCAGATGGTAGAA-----ATATGTGTTC------AGTGTTCAG-ttttttt-CTATAAGACATATGCAACTTGTGTTTTCCACTG---AATATCACATGAACTTAATGCATATAGAGCTACCTTGTTTTTCATGATTGTGCCT---ACAATTCCATGGAGA---AATATAATTTGTGAATTACCTGATGaaattttcctaattttgaa-tcatcc-ttgcattcct-aTAATAAACACT---------------------GTTAGAACGGCTAtggtaatattctatttt-------ttacttctgtattaaa---taagatt-----aaagttttgtttgt----ttcctttaagG---CTCTTATTTCATTCCAGTATCAAGGGTATGCAG-------GGCTAACTTGGGAAgctttac
i papAnu2.chr7              I 1 C 0
s chlSab2.chr29              21062864 519 -  24206276 AACCTCCACTTTTGTTTGCTTTGCTCCATTAATTAACCATTTTCCATTTACTGTCATTGTCTAATGAAGGTGAA--TTCTCTTCTGTTG------GTAATCCTATTTC-TTTTTTTG---TAATTGTGTGTTTAT---ATGTTTCTTCTTC---ACTGTATTTCTAGTGGAGCCTTAGGACAAAGAGCAGATGGTGGAA-----ATACGTGTTC------AGTGTTCAG--TTTTTT-CTGTAAGACTTCTGCAACTTGTGTTTTTCACTG---AATAGCACACGGACTTAATGCATATAGAGCTACCTTGTTTTTCCTGATTGTGCCT---ACAATTCTATGGAGA---AATATAATTTGTGAATTACCTGATGAAATTTTCCTAATTTTGAA-TCATCA-TCACATTCCT-ATAA-AAACACT---------------------GTTAGAACGGCTATAGTAATATTTTATTTTTGCATTTTTACTTCTGTATTAAA---GAAGATT-----AAAGTTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTCCAGTATCAAGGGTGTGCAG-------GGCTAACTTGGGAAGCTTTAC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 219641 506 -   2853901 AACCTCCACCTTTGTTTGCTTTGCCTCATTGATTAACCATTTTCCATTTACCATCACTGTCTAGTGGAGGTGAG--GTGGTCTCTGTTG------GGAACCCCATTCC--TATTTTG---TAATTGTGTGTTTAT-----------TCTTC---ACCA-AATTCTAGAGGAGCCTCAGGAAAAAGACCAGATGGGAGAA-----ATACATGTTT------AGTGTTCAGTTTTCCTT-CTGTAAGACATCTGCAACTTGTGTTTTTCACGG---AATATATCATGGATTTAATGCATACAGAGGCACTTTGTTTTTCATGATTGTGCCT---ACAATTCTATATACG---GATATAACTTATGAATTACATGATGACATTTTCCTAATTTTCAA-TCATCC-TTGCATTCCT-ATAATAACCACT---------------------GTTAGAATGGATACAGTAATATTTTGTTTGTGGATTTTTACTTCTATGTTAAG---TAAGGTT-----ATACTTTTGT--------TTCCTTTTGGG---CTTCTATTTCATTTCAGTAT--GTGGTATGCAG-------GGTTGACTTGGGAAGCTTTAT
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55171907 499 + 124595110 GACCTGTACTTGCACTTGT-GAGCTTCACTGATCA--CAGCTCCTATTTACAGTCA---TCTAATGGAAATGG------TGTTTTATTGCTCCTCATAAGTCCCTTTT-GCTTTTCA---AATTTTTGTATTTATAAAATGTTTATTCTTT-----TGTAATT-TAGTGGAGCCTAAAGAA-------AGATGAGAAAA-----ATGTTTAATTTTTCTAACTGTTCAGGTTTTATT-TTCTAGAGGGTCCATGGTTT-TGTTTTTTACTT-ACAATATATCCTGAACTTGAAGT--------CTGTCTTGTTTTTCCTGGGTGTAGATTGGACAACAGTGTAGATATCCAAGTTAATTTGTGAATTATGTAAGAAAAATGGCCTGATTTTGAA-TCATCCTTTGTGTTTTG-GTAATTAATATT---------------------GTTAGGATAGATGTGGTAATTTTTTGTTTTCAC---------------TTAGAGTCTAAGGTTGTTGAATGGTTTTGTTTCT----T---TTTTAGG---CTCTTGTTTCACTTCTGCATCAAGGTT---------------CTGACTTAGGAAGCTTTGC
i mm10.chr9                 C 0 I 177
s canFam3.chr30                 42941 566 -  40214260 AACCTAC---TGTACTTGT-TTGCTCCACTAATTCCCATTCTTCCACATATTGTCATCTGTTAACACGCGTGAATTTTCTTTTCTGCTG------GTCGGCCCATTTCCTTTTTTTGTTATCATTGTGTGTTAATACAGTTTTGATTCACAACAACTATAATTCTGGTGCGGCCTCAGGAAAGAAACAAGATGGGGAAAAACATATATAAATGC------TATGTTCAATTTGCCCT-CTCTGGAATGTCTGCAACTTCTGTTTCTCACTTAACAATATATCATGAACATGGTATGTGTGGATTTATCTTGTTTTTCATGGCTCTGTGT-----------ATGTAGA---GATACAATTTGTGAATTACATGTAGAAA-TTTACTAATTGTGAATTCATCC-TTATGTTCATAATACTCAGCACTTTCATGGGTGGTGGCTGGAGGGACAAGATGgatataatagtactttatttttggcttt----ttctactttaag---tgaaatt-taatgtagtttggtttatttacttccttttaggctcctcttgtctcatttcagaatcaggattatgtagtctcataggatgacttggtgagctttgt
i canFam3.chr30             C 0 C 0

a score=773600.000000
s hg38.chr15_KI270850v1_alt    185132 246 +    430880 ATC----TTTTTT-------CTAAGACCTAGGATGTAGATCTAGTTTACAcagtaattttcaactgcaggaatattttg----cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggtcacggtcgggaggtcttattggcattccgtgggtagaggggatgttactaaatgtcccacaacacaccaggagaaccct----cacaaagaattgtctggcccaagatatcaatattgctgaggctga
s panTro4.chr15              17708135 246 -  99548318 ATC----TTTTTT-------CTAAGACCTAGGATGTAGATCTAGTTTACAcagtaattttcaactgcaggaatattttg----cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggtcacggtcgggaggtcttattggaattctgtgggtagaggggatgttactaaatgtcccacaacacaccaggagaaccct----tacaaagaattgtctggcccaagatatcagtattgctgaggctga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10046970 246 +  10928107 atc----tttttT-------CTAAGACCTAGGATGTAGATCTAGTTTACAcagtaattttcaactgcaggaatattttg----cctcccatgggatgtttggaaatatctggagacattttt-gtggtcacaactggtcacggtcaggaggtcttattggcattccgtgggtagaggggatgttactaaatgtcccacaacacaccaggagaaccct----cacaaagaattgtctggcccaagatatcaatattgctgaggctga
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102139284 247 + 121039945 atc----tttctt-------ctaAGACCTAGGATGTAGATCTGGTTTACGcagtaattttcaactgcaggaatgttttg----cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggtcacggtcgggaagtcttattggcattccgtgggtagaggggatgttactgaatgtcccacagcacaccaggagaaccct---ccacaaagaattgtctggcccaagataccaatattgctgaggctga
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106607463 247 - 170124641 ATC----TTTTTT-------CTAAGACCTAGGATGTAGATCTAGTTTACACAGTAACTTTTGCCTACAGGAATattttg----cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggccatggtcgggaggtcttattggcattccgtgggtagaggggatgttattaaatgccccacaacacaccaggagaagcct---ccacaaagaattgtctggcccaatataccaatattgctgagggtga
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107345096 247 - 171882078 ATC----TTTTTT-------CTAAGACCTAGGATGTAGATCTAGTTTACACAGTAACTTTTGCCTACAGGAATattttg----cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggccatggtcgggaggtcttattggcattccgtgggtagaagggatgttactaaatgtcccacaacacagcaggagaaccct---ctgcaaagaattgtctggcccaatatatcaatattgctgaggctga
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59639809 252 + 162156779 atct---tttttt-------ctaaCACCTAGGATGTAAATCTAGTTTACACAGTAATTTTCAACTGCAGGAATATTTTGCCTCCCTCCCATGGGATGTTTGgaaatatctggagacattttt-gtggTCACAACTGGCCATGGTCGGGAGGTCTTATTGGCATTCCGTGGGTAGAGGGGATGTTACTAAATGTCCCACAACACACCAGGAGAACCCT---CCACAAAGAATTGTCTGGCCCAATATATCAATATTGCTGAGGCTGA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21063383 247 -  24206276 ATC----TTTTTT-------CTAAGACCTAGGATGTAAATCTAGTTTACACAGTAATTTTTGCCTACAGGAATattttg----cctcccatgggacgtttggaaatatctggagacattatt-gtggtcacaactggccatggtcgggaggtcttattggcattccgtgggtagaggggatgttattaaatgtcccacaacacaccaggagaagcct---ccacaaagaattgtctggcccaatatatcaatattgctgagggtga
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 220147 251 -   2853901 ATC----TTTTTTTTTCCCCCTAAGATCTGGGATGTAGATTTAGTTTACATagtaattttcaactggaggagattttta----cctcccg-gggacatttggaagtatctggagacatttttggttttcacaactggtcatggtaggg-ggtgctgttggcatttcttgggtagaaaggatgtcactaaacatcctacaataca-cggaagaaccct---ccacgaagaattgtccggcccaatatagcaatattgctga-attga
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 43507 236 -  40214260 ---gtattttttt-------ctaaaatctagga--------cagtttaaataa-aattTCAaactggatcca-gttttg----cctcccatgagacatctggaaatacctggagataattttggttgtcacaaccagctgaggggggggtgtggtgtgggcattttgtgggtagaggggatgttactaaatgtcttacgatgtcc------agtcctgcatgacaaagaattatgttgtgcaaaatatcagtactcctggggttta
i canFam3.chr30             C 0 I 126
e mm10.chr9                  55172406 177 + 124595110 I

a score=37053.000000
s hg38.chr15_KI270850v1_alt    185378 10 +    430880 caaaccctgG
s panTro4.chr15              17708381 10 -  99548318 caaaccctgG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047216 10 +  10928107 caaaccctgG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102139531 10 + 121039945 caaaccctgG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106607710 10 - 170124641 caaaccctgG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107345343 10 - 171882078 caaaccctgG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59640061 10 + 162156779 CAAACCCTGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21063630 10 -  24206276 caaaccctgG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 220398 10 -   2853901 gaaacTGTGG
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 43869 10 -  40214260 caagccctgg
i canFam3.chr30             I 126 I 143
e mm10.chr9                  55172406 177 + 124595110 I

a score=152963.000000
s hg38.chr15_KI270850v1_alt    185388 47 +    430880 TTTAAATAAATGTCCAATTTGGAGGATGAGTCT--GTCTTTTTCCTTCT
s panTro4.chr15              17708391 49 -  99548318 TTTAAATAAATGTCCAATTTGGAGGATGAGTCTTTGTCTTTTTCCTTCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047226 49 +  10928107 TTTAAATAAATGTCCAATTTGGAGGATGAGTCTTTGTCTTTTTCCTTCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102139541 49 + 121039945 TTTAAATAAATGTCCAATTTGGAGGATGAgtctttgtctttttccttct
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106607720 49 - 170124641 TTTAAATAAAAGTCCAATTTGGAGGATGAGTCTTTGTCTTTTTCCTTCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107345353 49 - 171882078 TTTAAATAAATGTCCAATTTGGAAGATGAGTCTTTGTCTTTTTCCTTCT
i macFas5.chr7              C 0 I 100
s papAnu2.chr7               59640071 47 + 162156779 TTTAAATAAATGTCCAATTTGGAGGATGAGtc--tgtctttttccttct
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21063640 49 -  24206276 TTTAAATAAATGTCCAATTTGGAAGATGAGTCTTTGTCTTTTTCCTTCT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 220408 49 -   2853901 TTTAAATAAAAATCCAATCTAGAGGATGAGTCTTTGTCTTTTTCCTTCT
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 44022 34 -  40214260 TTTAAATAAACGTCTGAGCTGGA---------TACGTTTTTTT------
i canFam3.chr30             I 143 C 0
e mm10.chr9                  55172406 177 + 124595110 I

a score=6447.000000
s hg38.chr15_KI270850v1_alt    185435 3 +    430880 TCT
s panTro4.chr15              17708440 3 -  99548318 TCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047275 3 +  10928107 TCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102139590 3 + 121039945 tct
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106607769 1 - 170124641 --T
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7               59640118 1 + 162156779 --t
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21063689 3 -  24206276 TCt
i chlSab2.chr29             C 0 I 1
s calJac3.chrY                 220457 3 -   2853901 TCT
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 44056 3 -  40214260 TCT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=109910.000000
s hg38.chr15_KI270850v1_alt    185438 68 +    430880 GCGTATTGGTCTCCA--GATTTTCCATTTCTTCAGTT---------------------AGTTTTCGTAACTGTAGATTCTTAAAAGAAATG
s panTro4.chr15              17708443 68 -  99548318 GCGTATTGGTCTCCA--GATTTTCCGTTTCTTCAGTT---------------------AGTTTTCGTAAGTGTAGATTCTTAAAAGAAATG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047278 68 +  10928107 GCATATTGGTCTCCA--GATTTTCCATTTCTTCAGTT---------------------CGTTTTCATAACCGTAGATTCTTAAAAGAAATG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102139593 68 + 121039945 gtgtattggtctCCA--GATTTTCCATTTCTTCAGTT---------------------GGTTTTTGTAACTGTAGATTCTTAAAAGAAATG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106607770 89 - 170124641 GTTTATTTGTCTCCA--GATTTTCCATTTCTTCAGTTcgttttcataacgtttcataacgttttcataacTGTAGATTCTTAAAAGAAATG
i rheMac3.chr7              C 0 C 0
s papAnu2.chr7               59640119 68 + 162156779 gtgTATTGGTCtcca--gattttccatttcttcagtt---------------------AGTTTTCATAACTGTAGATTCTTAAAAGAAATG
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 220460 62 -   2853901 ATATGTTGATCTCCA--TATTTTCCACTTCCTC-------------------------TGTTTTAGTAA-TGTAGATTCTAAAAAAAAAT-
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 44059 67 -  40214260 ACACATGAATCTCCATTTTTTTTCCATTCCTTTAGTC---------------------AGTTTTAGTAATTTTAGATTCTAAAAAAAA---
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=68209.000000
s hg38.chr15_KI270850v1_alt    185506 64 +    430880 AACACTTCTCCCatacttctaaggtgttgtaaagatgtgtaaagttttcactttttgcatcata
s panTro4.chr15              17708511 64 -  99548318 AACACTTCATCCGTACTTCTGAGGTGTTGTAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047346 64 +  10928107 AACACTTTCCCCatacttctaaggtgttgtaaagatgtgtaaagttttcactttttgcaccata
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102139661 64 + 121039945 AACACTTTGTCCatacttctaaggtgttgtaaagatgtgtaaagttttcactttttgcatcata
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59640187 64 + 162156779 AGCACTTCTTCCACACTTCAAAGGTGTTGTAAAGATGTGTAAAGTTTTCACTTTTTACATCATA
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 220522 62 -   2853901 --CGCTTCATGTATACTTCTAAGCTGTTGGAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i calJac3.chrY              C 0 I 15
s canFam3.chr30                 44126 23 -  40214260 ------TCACTCATCCTT--------------------------------ACTTTTgaatc---
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=29425.000000
s hg38.chr15_KI270850v1_alt    185570 31 +    430880 ttcacatgtggctat-atgcccttttgtcttc
s panTro4.chr15              17708575 31 -  99548318 TTCACATGTGGCTAT-ATGCCCttttgtcttc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047410 31 +  10928107 ttcacatgtggctat-atgcccttttctcttc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102139725 31 + 121039945 ttcacatgtggctat-atgcccttttctcttc
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59640251 31 + 162156779 TTAACATGTGGCTAT-ATGCCCTTTTGCCTTC
i papAnu2.chr7              C 0 C 0
s canFam3.chr30                 44149 26 -  40214260 ------tatagttatgaagctcttttcatttc
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220584 15 -   2853901 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=436189.000000
s hg38.chr15_KI270850v1_alt    185601 348 +    430880 --aaa--gttttctttatcttgatcacttatcagaggcgtgactgttttattatcttagtcttttgaaagaatcctcccttagttttattttttaaatttagtggg--ttgttttcacattttccttgtgtcttaattatttcccctttttgtttattttgctttttctagtttagtggatcaatgtaatttaaactgctttttaaacaaacctgtaatggtatacattttctt-tgggtgctgtttgactttattgcacaagttttaaaatctattttcTAAATAGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATTAAAACTTTTTATT
s panTro4.chr15              17708606 348 -  99548318 --aaa--gttttctttatcttgatcacttatcagaggcgtgactgttttattatcttaggcttttgaaagaatcctcctttagttttatttttttaatttagtggg--ttgttttcacattttccttatgtcttaattatttcccctttttgtttattttgctttttctagtttagtggatcagtgtaatttaaactgctttttaaacaaacatgtaagggtatacattttctt-tgggtgctgtttgactttattgcacaagttttaaaatctattttcTAAATAGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATTAAAACTTTTTATT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047441 348 +  10928107 --aaa--gttttctttatcttgattacttatcagaggcgtgactgttttattatcttagtc-tttgaaagaatcct-ctttagttttattttttaaatttagtgaggttttttttcacattttccttatgtcttaattatttcccctttttgtttattttgctttttctagcttagtggatcactataatttaaattgctttttaaacaaacatgtaagggtatatattttctt-tgggtgctatttgactttattgcacaagttttaaaatctattttcTAAATGGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATTAAAACTTTTTATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102139756 347 + 121039945 --aaa--gttttctttatcttgatcacttatcagaggtgtgactgttttattatcttagtcttttgaaagaatcctcctttagttttattttttaaatttagtggg--ttgttttcacattttccttatgtcttaattatttccccttttt-cttagtttgCTTTTTCTAGTTTAGTGGATCAATGTAATTTAAACTGGTTTTTAAACAAACATGTAAGGGTATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCTATTTTCTAAATAGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATTGAAACTTTTTATT
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59640282 349 + 162156779 --AAA--GTTTTCTTTATCTTGATCACTTATCAGAGGCGTGATTGTTTTATTATCTTAGTCTTTTGAAAGAATCCtcctttagttttatattttaaatttagtggg-tttcttttcacattttccttatgtcttaattatttcccctttttctttattttactttttctagtttaGTGGATCAATGtaatttaaattgctttttaaacaaacatgTAAGAGTATACATTTTCTT-TGGGTGCTGTTTGACTTTATTACAcaagttttaaaatctattttctaaaCAGTTTGTATTTTCTAAGTCATTTTATTGCATCCTATGTTCTCATTGCTCTTactattaaaactttttatt
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 220599 294 -   2853901 --AAA--GTTTTCTTTCTCTTGATTACTTATCAG-----------------------AGTCTTTTGAAAGAATCCTCCTTTAATTTTAT-TTTTACATCTAGTGTT------TTTCATTTTTTGCTTGT------CTTATTTCCCCTTTTTGTTTATTTTGCCTTTTCTAGTTTAGTTGATTAATGTAATTTAAATTGCATTATAAACAAACATGTAAGGGTATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGTATAAGTTTTAAAATCTATTTTCTAAGTAATTTG------------------ATTCCATCATTTGTTCACATTGC-CATACTAtt-aaactttttatt
i calJac3.chrY              I 15 I 10
s canFam3.chr30                 44175 280 -  40214260 tgaagttgttttctctattgtgactacttgtcagaagcttgtctgttttattatgttggccttttgaaagaatcagtcct--------tttcttaaacctaatttt-------------------------cttgagtatttt---------tttcttttgc-ttttctcgtttatgagatcaccatgatttaaattgcttt---aaCAAACATGTAAAGGTACACATTTTCTTCTGTGTGCCATTTGACTTCATTGCATAGGTTT---AGTATA-TTTCTAAATAGTTTGTATTTCCTAAGTGCTTTGATTCCATCTTTTGTTCATATT-------------------------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=1067.000000
s hg38.chr15_KI270850v1_alt    185949 2 +    430880 Tg
s panTro4.chr15              17708954 2 -  99548318 Tg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047789 2 +  10928107 gg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102140103 2 + 121039945 Tg
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59640631 2 + 162156779 ag
i papAnu2.chr7              C 0 C 0
s canFam3.chr30                 44455 2 -  40214260 TG
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220893 10 -   2853901 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=221635.000000
s hg38.chr15_KI270850v1_alt    185951 272 +    430880 cccggcatggtggcttatgcctgtaatcccagcactttgggaggccaaggcaggtgaatgacctgagattgggagttcgagaccagcctgatcaacatggagagagcccgtctctactaaaagtacaaaaattagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagacagaggttgcagtgagctgagatcacgccactgcactccagcctgggcaacaagagtgaaa
s panTro4.chr15              17708956 272 -  99548318 cctggcatggtggcttatgcctgtaatcccagcactttgggaggccaaggcaggtggatgacctgaggttgggagttcgagaccagcctgaccaacatggagagagcccgtctctactaaaaatacaaaaattagctgggcatggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggagacagaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacaagagcaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10047791 272 +  10928107 cctggcatggtggttcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctgaccaacatggagagagcccgtctttactaaaaatacaaaaattagccaggtgtgatggcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaaacagagtttgcagtgagctgagatcacaccactgcagtccagcctgggcaagaagagcgaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102140105 272 + 121039945 cccggcatggtggtttatgcctgtaatcccagcactttgggaggcgaaggcaggtggatgacctgaggttgagagttcgagaccagcctgaccaacatggagagagcccgtctctactaaaaatacaaaaattagctgggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggagacggaggttgcagtgagctgaggtcgcgccacagcactccagtctgggcaacgagagcgaaa
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59640633 270 + 162156779 ccgggcacggtgactcatgcctgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggagttcgagaccagcctgaccaacagggagagagcccatctctgctaaagatataaaaattagctgggtgtggtggcacatgcctacaaatccagctactcaggaggctggggcaggagaaccgcttgaatccgggagacaga--ttgcagtgagctgagatcgtgccactgcactcaagcctgggcaataagagcgaaa
i papAnu2.chr7              C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220893  10 -   2853901 I
e canFam3.chr30                 44457   0 -  40214260 C
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=7205.000000
s hg38.chr15_KI270850v1_alt    186223 33 +    430880 ttccacct---caaaaaaaaaaa-------aaaaaaaaaaaaG
s panTro4.chr15              17709228 21 -  99548318 ctccacct---caaaaaaaaaaT-------------------G
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10048063 40 +  10928107 ctctgcct---caaaaaaaaaaaCCTTTTTATTGTGAGATATG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102140377 28 + 121039945 ctccacct---caaaaaaaaaaa------------aaaaaaTG
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59640903 43 + 162156779 ctctgcccccaccaaaaaaaaaacctttttattgtCAGATATG
i papAnu2.chr7              C 0 C 0
s canFam3.chr30                 44457 19 -  40214260 TTCTATTT---CACAAGAAAAA---------------------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220893 10 -   2853901 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=177566.000000
s hg38.chr15_KI270850v1_alt    186256 164 +    430880 -----ACATGTATTGaaattatgtaaaacataagcttagtgtaacatatagttagagcgagtacttgggaactaatacctagccagcaccaaggt---gaagagaaggcacattgcttgcactacagaaaccttctgcaggctgcttcctgat----caccatgcctctgtacgct
s panTro4.chr15              17709249 164 -  99548318 -----ACATGTATTGaaattatgtaaaacataagcttagtgtaacatatagttagagcgagtacttgggaactaatgcctagccagcaccaaggt---gaagagaaggcacactgcttgcactacagaaaccttctgcaggctgcttcctgat----caccatgcctctgtacgct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10048103 164 +  10928107 -----ACATGTATTGAAATTATGTAAAACATAAGCTTAGTGTAACATATAGTTAGAGTGAGTACTTGGGAAGCAACACCTAGCCAGCACCGAGGT---GAAGAGAAGGCACACTGCTTGCACTACAGAAACCTTCTGCAGGCTGCTTCCCGAT----CACCATGCCTCTGTACGCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102140405 164 + 121039945 -----ACATGTATTGAAATTATGTAAAACATAAGCTTAGTGTAACATACAGTTAGAGCAAGTAGTTGGgaactaacacctagccagcaccaaggc---gaagagaaggcaccttgcttgcactacagaaaccttctgcaggctgcttcctgat----caccatgcctctgtatgct
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59640946 113 + 162156779 -----ACATGTATTGAAACTATGTAAAACATAAGCTTATTGTAACATGTAGTTAGA------------GAACCAACACCTAGCCAGCACTGAGGTGAAGAAGAAAAGGCACATTGCTTGCACTACAGAAA----------------------------------------------
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 220903 160 -   2853901 -----acatgtactgaaaatatgtaaaacttaagcttagtgtaacacataattagagtgaatacttgagaaccaacagctagccaccacttaggt---gaagagaaggcacgttactagcactgcagaaactttctgcaggctccttcccgat----cattg----tctctgcgct
i calJac3.chrY              I 10 C 0
s canFam3.chr30                 44476 144 -  40214260 GTTTTATATGTATTG---------aaaacataag-----------------ttacagtgaatacttgggaactaccacccagct-ccacccaggt---gaagaaacacaatattgctagcact--agaagccttttgcaggctctttccagatgatggatcattcccttctgtgct
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55172406 177 + 124595110 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=384247.000000
s hg38.chr15_KI270850v1_alt    186420 272 +    430880 catcttgccttatatttctctagtgttatcactcatata--tgcatccttcaacaatacggtgtagtgttgcctattgtttgaactt-----ttgaaaatcatactatatgtat----tttttcatatct-ttgttgtgctcaacattgtgtgtgaaatttgttcccattgtgtgtagttatagttcttttgcattgctgtatttactccattgtttgaatatac---cataccatttatccccttgactaga-taca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------tgttattagg
s panTro4.chr15              17709413 272 -  99548318 catcttgccttatgtttctctagtgttatcactcatata--tgcatccttcaacaatacggtgtagtgttgcctattatttggactt-----ttgaaaatcacagtatatgtat----tttttcatatct-tcgttgtgctcaacgttgtgtgtgaaatttgttcctattgtgtgtagctatagttcttttgcattgctgtatttactccattgtttgaatacac---cataccatttatccccttgactaga-taca------------------gaca--tgtgggtggt---------------------------------------------ttccag-----------tgttattagg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10048267 271 +  10928107 CATCttgccttatgtttctctagtgttatcactcatata--tgcatccttcaacaatacggtgtagtgttgcctattgtttgaactt-----ttgaaaatcatactatatgtat----tttttcatatct-ttgttctgctcaatattgtgtgtgaaatttgttcctattgtgtgtagct-tagttcttttgcattgctgtatttactccattgtttgaatacac---cataccatttatccccttgactaga-taca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------tgttattagg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102140569 270 + 121039945 catcttgccttatgtttctctagtgttatcactcatgta--tgcatccttcaacaatacagtgtagtgttgcctattgtttgaactt-----ttgaaaatcatactgtatgtat----tttttcatatct-ttgttgtgctcaacattgtgtgtgaaatttgttcctattgtgtgtagctatagttcttctgcattgctgtatttactccattgtttgaatacgc---cctaccatttatccccttgactaga-taca------------------gaca----tgggttgt---------------------------------------------ttccag-----------tgttattagg
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59641059 265 + 162156779 -------ACTTATGTTTCTCTAGTGTTATCACTCACGTA--TGCATCCTTGAAGAATACAGTGTAGTGTTGCCTATtgtttaaactt-----ttgaaaatcatgctatatgtat----tttttcataccT-TTGTTGTGCTCAATATTGTGTGTGAAATTTGTTCCTATTGTGCGTAGCTATCGTTCTTTTGCTTTGCTGTATTTACTCCATTGTTTGAATACAC---CATACCATTTATCCCCTTGGCTAGA-TACA------------------GACA--CATGGATTGT---------------------------------------------TTCCAG-----------TGTTATTAGG
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 221063 272 -   2853901 catctttccttacgtttctctagtgttatcactcatgta---gcatccttgaaaaatacagtgtagtgctgcctattgttcgaactt-----ttgaaaatcatactatatgtgt----tttttcatgtct-tggtcgtgctcaacacttagtgtgaaatttgttcatattgtgtgtagctgtagttcttttgcattgctgtatttattccattgtttgaatacat---cataccatttatccccttgactatattaca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------cgttatttgg
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55172583 237 + 124595110 CATCTGTCCTTACTTTCCTCTGACTTTATCCTTCATGCG--TGCTTACTT---CTGTATAGTTTAGTGTTGCC---TGTATTGAGCT-----TTAAGAGTCACACTATATATAT---------------------------------------TGGCATGTTTTCTT------Tgcagtt-----ccttttttattgctatgttcatttcgttgttcaaaaagatgagaatgcccattttccacttgagtgtt-gata------------------gataatggtaggctgt---------------------------------------------ttctagttttttgatctttttgtttgg
i mm10.chr9                 I 177 I 10
s canFam3.chr30                 44620 337 -  40214260 aatcttttcct---tttccctagttttgtcacatatctatctgcatctctgaacaagatggtttagtgttgactgtttttttaagcttcatattaagagtcgtactatatgtgtattctttctcatttgtctttttttgcttgacattgtgtgttaaacttattctttttagctgtaggt--------ttttcattgctgtatttgttccattgtttgaatatac---cataacgtttatccattggagttgattgcagttttaggaatagtgtggggca--cctgggtggtgcagttgggtaagcagccacttcttggttttagctcaggtcaggatctcag-----------ggttgtgagg
i canFam3.chr30             C 0 I 152
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=641716.000000
s hg38.chr15_KI270850v1_alt    186692 465 +    430880 aacagtgattgctgctgtggtcattcttgtctgtatttcatggtatccttgtgccagcatttctctggggcacatacttaggagttggatgactgaggcatgaggATCAATTTCTTCTTTT---ACCCAAGAGTTATCTAGAAAAAAAAA---------------GCATTTTCAGGTGGCTTTTGAGGTGTTTTTA-GTGCATCAGTGTGGTCAGAGAATATGGCCTGTGACCTTTCAGCGAGATTATCAGCAATCATTTAGACTTCACTATTGGTGTTACTGTTGCCTTTGCTTATTGCTACTTCTTGTATCATGTCTCCTGCTCCCTGCCCCTCGAG--TATATCCCTGAATAATATCCTGGGtt-tttgtttttttttttttCCTAGAAAG----GGTTTGTGGGGA---------TGTGTATGGAGTGTGTTCCATGA--ACTTGCTGTCTGTT-Atcatttgttcaacaaatatttgactctgtataaagtactccat
s panTro4.chr15              17709685 466 -  99548318 aacagcgattgctgctgtggtcattcttgtctgtatttcatggtacccttgtgccagcatttctctggggctcatacttaggagttggatgactgaggcatgaggATCAATTTCTTCTTTT---ACCCAAGAGTTATCTAGAACAAAAAA------AGTTAAAAAGCATTTTCAGGTGGCTTTTGAGGTATTTTTC-GTGCATCAATATGGTCAGAGAATATGGCCTGTGACCTTTCAGTGAGATTTTCAGCAATCATTTAGACTTCACTATTGGTGTTACTGTTGCCTTTGCTTATTGCT-CTTCTTGTATTATGTCTCCTGCTCCCTGCCCCTCAAG--TATATCCCTGAATAATATCCTGG--------TTTTTTTTTTTTTCCTAGAAAG----GGTTTGTGGGGA---------TGTGTATGGAGTGTGTTCTGTGC--ACTTGCTGTCTGTT-ATCATTTGTTCAACAAATATTTGACTCTGTATAAAGTACTCCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10048538 474 +  10928107 aacagctaatgctgctatggtcattcttgcctgtatttcatagtacccctgtgccagcatttctctggggcacattcttaggagttggatgactgaggcatgaggATCAATTTCTTCTTTT---ACCCAAGAGTTATCTAGAAAAAAAAC------ATTTAAAAAGCATTTTCAGGTGGCTTTTGAGGTATTTTTA-GTGCATCAGTATGGTCAGAGAATATGGCCTGTGACCTTTCAGCGAAATTATCAGCAATCATTTAGACTTCACTATTGGTGTTACTGTTGTCTTTGCTTATCGCGACTTC-TGTATTATGTCTTCTGCTCCCTGCCCCACAAG--TATATCCCTAAATAATATCCTGGGTTGTTTTTTTTTTTTTTTTTCCTAGAAAG----AGTTTGTGGGGA---------TGTGTATGGAGTGTGTTCCATGA--ACTTGTTGTCTGTT-ATCATTTGTTCAACAAATATTTGACTCTATATAAAGTACTCCAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102140839 477 + 121039945 aacagcgactgctgctatggtcattcttgtctgtatttcatggtacccttgtgccagcatttctctggggcacatacttaggagttcgatgactgaggcatgaggATCAATTTCTTCTTTT---ACCCAAGAGTTATCTGGAAAAAAAAAAA---CATTTAAAAAGCATTTTCAGGTGGTTTTTGAGGTATTTTTA-GTGCATCAATATGGTCAGAGAATATGGCCTGTGACCTTTCAGC-AGATTATCAGCAATCATTTGGACTTCACTATTGGTGTTACTGTTGCCTTTGCTTATTGCTATTTCTTGTATTATGTCTCCTGCTCCCTGCCCCTCAAG--TATATCCCTGAATAATATCCTGGGTTTTTTTGTTTTGTTTTTTTCCCAGAAAG----GGTTTGTGGGGA---------TGTATGTGGAGTGTGTTCTGTGA--ACTTGCTGTCTGTT-Atcatttgttcaacaaatatttgactctgtatgaagtactccat
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59641324 464 + 162156779 AACAACGAATGCTGCTGTGATCATTCTTGTCTATATTTCATGGTACCCCTGTGCCAGCATTTTTCTGGGGCACATACTTAGGAGTTGGAtgactgaggcatgaggatcaatttcttctttt---acccaagagttatctagaaaaaaaaa-------attaaaaagcattttcaggtggcttttgagttattttta-gtGCATCAGTATGGTCAGAGAATATGGCCCGTGACCTTTCAGCTAGATTATTAGCAATCATTTACACTTCACTATTGGTGTTACTGTTGTCTTTGCTTATTGCTACTTCTTGTATTATGTCTCCTGCTCCCTGCCCCTCAAG--TATATCCCTGAATAATAtcctgggtt----------tttttccccctagaaag----GGTTTGTGGGGA---------TGTGTATGGAGAGTGTTCCATGA--ACTTACTGTCTGCt-atcatttgttcaacaaatatctgACTCTGTATAAAGTACTCCAT
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 221335 475 -   2853901 aatagcgaatgctgctatgatcattcttgtctgtatttcatggtacccctgtgccagcatttctctggggtacatacttaggaattggatgactggggcatgaggATCAATTGCTTCTTTT---ACCCCAGCATTATGTAGGAAAAAAAAAAACTTTTTTAAAAAACATTTTCAGGTGACTTTTCAGTTATTTTTA-GTGCATCAATATGGTAAGAGAATATGGCCGGTCACCTTCCAGCTGCATTATCAGTGGTTGTTTAGACTACATTATTGGTGTTACTGTTGTCTTTGCTTATTAATGCTGCTTCTGTTACATCTCCTGCTCCCTGCCCGTCAAG--TATATCCATGAATAATATCCTG------TTTTGTTTTGTTTTTTCCTGGAAAG----GGTCTGTGGGAA---------TGTGTATGGAGAGTGTTCCTTGAATACTTGCTGTCTGTT-ATCATTTGTTCGACAGATA-CTGAGTCTGTGTAAAGTATTCCA-
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55172830 374 + 124595110 tgttaagagtcctactgtggattttcttgtttgtatttctggatactcttgtgcagtcatttctctggggtacatacttagg----gggttgctttgctaggATTATCTCTCTCTCTCTCTCAGACCTAAGAGTTATCTAGACAGAACGG---------TACAATAC-TTTTCAGGTGAC-TTTGGGTTACTCTTGTTTTTGTCAGTA----------------CATGTGACCTTGCA-----------AGTGA-----TGGACTGACCCGCTGCTGTCAGTGCTG-------TTACTGCTACTCCCTGGGGGATCCCTCCAG--------------AG--TGTACTCTCG-------TCTTGA------------------TTTCCTAGAAAGGTTTGGTTTATGGAGATAGGTATGGTATGCATGGAGAGTGTTGTAT----ACTTGGTGTCTGTT---------TTTAGCA--------------TGGAAAGT-------
i mm10.chr9                 I 10 C 0
s canFam3.chr30                 45109 438 -  40214260 aacagt--ctgctgccatgatcattcttgtccatattttgtgggatacttgtgcaagtgtttttct-gggcacatacttagaagttggattaccggggcatgagggtCAATTTCTTCTTAA---ATTTAAGAGTTCTTAAGAAAAA-----------TTTTTTTAACATTCGCAGATGGCATTTGGGCTATTTTTA-GTTTTTCACTGTT----TACAATATGGCCTATAACTTCTCAGCTGAATTGTCAACAATTGCTTAAACTTAACCATTGGTATTATTA-GGTCTTTGCTTATTGCTGTTTCTCATATTCCATGGT-TGCTTCCTAACTCTGAAAATAACATCCCTGAATGATGTCCT------------TTATTTTCATTTCTAGAAAG----GCTTTCTGGGAA---------TGTGTGTGGGAAGTGT---------TTTTATTGTTCATCGAACACCTATC-------TATCTGACTCTGTGCAAAGTACTCTAT
i canFam3.chr30             I 152 I 153
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=290251.000000
s hg38.chr15_KI270850v1_alt    187157 248 +    430880 ccatatcagtgt--------------------------------------------ggagaatccagaggcaaa----catacacagatacgcttcctgtcttgacggagctagatatagaattctgaggtcataattgagtttctttccaggtctttatacttttatgttctgatatttattgtt-gtaga-tgaaaagtctgatgcctatctgattcttagttct------------------ttCTGATAGTTAGTATGA-TTTTCTGTGTAACTGTAAAGTGTGGGGGttttactt----------------------------cttttttttttttt---------gag
s panTro4.chr15              17710151 245 -  99548318 CCATATCGGTGT--------------------------------------------GGAGAATCCAGAGGCAAA----CATACACAGATATGCTTCCTGTCTTGAGGGAgctagatatagaattctgagatcataattgagtttctttccaggtctttatacttttatgttctgatatt----gtt-gtaga-tgaaaagtctgatgcctatctgattcttagttct------------------ttctgatagttagtatga-ttttCTGTGTAACTGTAAAGTGTGGGGGttttactt----------------------------tttttttttttttt--------tgaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10049012 274 +  10928107 CCATATCAGTGT--------------------------------------------GGAGAATCCAGAGGCAAA----CATACACCGATATGCTTCCTGTCTTGATGGAgctagatatagaattcttaggtcataactgagtttctttccaggtctttacacttttatgttctgatatttattgtt-atagattgaaaagtctgatgcctacctgattcttag----------------------ttctGATACTTAGTATGA-TTTTCTGTGTAACTGTAAAGTGTGGGCGttttatttatttatttatttatttatttttattttatttttttttttttt--------tgag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102141316 237 + 121039945 ccatatcagtgt--------------------------------------------ggagaatccagaggcaaa----catacacagatatgcttcctgtcttgagggagctagatatagaattctgaggtcataattgagtttctttccaggtctttatacttttatgttctgatatttattgtt-gtaga-tgaaaagtctgatgcctatctgattcttagttct------------------ttCTGA----TAGTATGA-TTTTCTGTGTAACTGTAAAGTGTGGGGGttttactt----------------------------ttttttt----------------gag
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59641788 257 + 162156779 CCATATCAGTGT--------------------------------------------GGAGAATCTGGAGGCAAA----CATACACAGATAGGCTTCCTGTCTTGAGGGAGTTAGATATAGAATTCTGAGGTCATGATTGACTTTCTTTCCAGGTCTTTACACTTTTATGTTCTGATATTTATTGTT-ATAGA-TGAAAACTCTGATGCCTATCTGATTCTTAGTTCT------------------TTCTGATCGTTAGTATGA-TTTTCTGTGTAACTGTAAAGTGTgggggttttcctt--------------------tttttttttttttttttttttt--------tgag
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 221810 270 -   2853901 CCACATTGGTGT--------------------------------------------GGAGAATCTGGAGGTGAA----CATACATAGATATTCTTCCTGTTTTGATGGAGCT--atatagaattctaagttcataattgagtctctttccagttctttacacttttatcttctgatatt---tgtt-acaaa-tgaaaagtctgatgcctagctgcttcttacttctttctgtgtgttttttttattctggtagttggtatga-ttttctctGTAACTGTAAAGTGTGGGGCTTTTACTT----------------------------TTCAATATTCCTTTAAAAGAAAAAAA
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55173204 223 + 124595110 --GTGTTGGTGC--------------------------------------------GGAGAACCCACATATACAAGTGTGTACACGTACAGAGCTTCTGACTGAATGGTGCCAGTTCCAGAGTTCTAAGTTCCTTAGTGGGTGTT-----------------------------ACATTTAGTGTTAATAGA-T-ACAACTCCAGTGGCTGTGTGATTCCTCTTTCTGTGTA-------------TTTCATTTTCCTGTCTGATTTTTCTCTGTAACTGTGGTCTCTG----TTTTGTTT----------------------------CTCAGTATTTCTTT---------GGG
i mm10.chr9                 C 0 I 150
s canFam3.chr30                 45700 260 -  40214260 ccctctcggtgtctctctgaataaataaataaaatcttaaaaaaaaaAAAAAATGCTGAGGATCCAGTGGCAGA----GAAACACAGATGTGCTGTCTGTCCCGATGGAACCAGATACAGAAT--------------TGAGTCTCTTCTAGGTTCTTTACA-TTTTATCTTCCAGTACTTCTTGTC-ACAAG-TGAAAAGCCTG----CTGTCTGGTTCTTCTTT--------------------TTCTA--------TATTT-TTTTCTTT----CTGGAAATTGGTAGGGTTTTACTT----------------------------TTCAGTATTCCTTT--------TGGG
i canFam3.chr30             I 153 C 0
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=1985.000000
s hg38.chr15_KI270850v1_alt    187405 3 +    430880 aca
s panTro4.chr15              17710396 3 -  99548318 aca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10049286 3 +  10928107 aca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102141553 3 + 121039945 acg
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59642045 3 + 162156779 atg
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 222080 3 -   2853901 AGa
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 45960 3 -  40214260 GCA
i canFam3.chr30             C 0 I 161
e mm10.chr9                  55173427 150 + 124595110 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=229556.000000
s hg38.chr15_KI270850v1_alt    187408 229 +    430880 agaatctcgctctgtcagccaggctggagtgcagtggtgcgatcttggatc-----actgcaacctccacctctcaggttcaaatgatactcccgcctcagcctcctgagtagctgggactacaggcatg---taccaccatgcccaactaa-atttt--gtattattagtagagatagggtttcaccatgttagccaggatggtctcgatctgctgacctc--gtgatccacccgccttga
s panTro4.chr15              17710399 228 -  99548318 -gagtctcactgtgtcacccaggctggagtgcagtggtgctatcttggatc-----attgcaacctccacctctcaggttcaaatgatactcccacctcagcctcctgagtagctgggactacaggcatg---taccaccatgcccggctaa-atttt--gtattattagtagagatagggtttcaccatgttagccaggatggtctcgatctgctgacctt--gtgatctgcctgccttga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10049289 229 +  10928107 -gagtctcgctctgtcacccaggctggagtgcagtggcacgatcttggctc-----actgcaacctctgcctctcaggttcaaatgatactcgtgcctcagcctcctgagtagctgggactacaggcatg---tgccaccatgcccagctaatttttt--gtatttttagtagagacagggtttcaccatattagccaggatggtctcagtctcctgacctt--gtgatccacccgcttcaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102141556 228 + 121039945 -gagtctcgctctgtcacccaggctggagtgcagcggcgcgatcttggatc-----actgcaacctccacctctcaggttcaaatgatactcccgcctcagcctgctgagtagctgggactacaggcatg---taccaccatgcccggttaa-atttt--gtattattagtagagatagggtttcaccatgttagccaggatggtctcgatctgccgacctc--gtgatccgcctgcctagc
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59642048 229 + 162156779 -gagtctcattctgtcacccaggctggagtgcagtggtgcgatcttggctc-----acagcaacctctacctctcacgttcaagtgatactcctgcctcagcctcctgagtagctggggctacaggcatg---tgccaccatgcctggctaatttttt--gtacttttagtagagacagggttttaccacattaaccaggatggtctcgatctcctgacctc--atgatccacccacctcaa
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 222083 240 -   2853901 -gggtcttgctctcttgcccaggctagagtgcagtagtgtgatcatgcctctacctgctacagcctctacctcctggacataagcagtccttccacctcagcctcctgagtagctgggactacaggtgtgcaatgccaccatgcgtgactga-tttttaaacactttttgtagagatgggtatataccatgttgcccaagctggcctcaaactcctgggctcaagtgctcctcctgccttgg
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55173427 150 + 124595110 I
e canFam3.chr30                 45963 161 -  40214260 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=35320.000000
s hg38.chr15_KI270850v1_alt    187637 35 +    430880 tctctcaaagtgct---ggaattacagatgtgagccac
s panTro4.chr15              17710627 35 -  99548318 tctgtcaaagtgct---gggattacagatgtgagccac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10049518 35 +  10928107 cctctcaaagtgcc---aggattacagacatgagccCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102141784 35 + 121039945 tctctcaaagtgct---gggattacagatgtgagccac
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59642277 35 + 162156779 cctctcaaagtgct---gggattacagacatgagtcac
i papAnu2.chr7              C 0 C 0
s calJac3.chrY                 222323 34 -   2853901 cctccc-aggtgtt---ggtattacaggcatgagccac
i calJac3.chrY              C 0 I 259
s canFam3.chr30                 46124 38 -  40214260 TTTCTCCACATTCTAAGGGAATGTCACAGTTTGGTCAT
i canFam3.chr30             I 161 C 0
e mm10.chr9                  55173427 150 + 124595110 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=4612.000000
s hg38.chr15_KI270850v1_alt    187672  9 +    430880 cTT----------AATGTT
s panTro4.chr15              17710662  9 -  99548318 cTT----------AATGTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10049553 10 +  10928107 GTT---------AAATGCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102141819  9 + 121039945 cTT----------AATGTT
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59642312 10 + 162156779 ctt---------AAATGCT
i papAnu2.chr7              C 0 C 0
s canFam3.chr30                 46162 19 -  40214260 CTTCTAAATTGCAAATGCT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55173427 150 + 124595110 I
e calJac3.chrY                 222357 259 -   2853901 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=15595.000000
s hg38.chr15_KI270850v1_alt    187681 14 +    430880 TTGCTGAGTCACGT
s panTro4.chr15              17710671 14 -  99548318 TTGCTGAGTCATGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10049563 14 +  10928107 TTGCTGAGTCATGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102141828 14 + 121039945 TTGCTGAGTCACGT
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59642322 14 + 162156779 TTGCTGAGTCAAGT
i papAnu2.chr7              C 0 C 0
s mm10.chr9                  55173577 14 + 124595110 CTGCTGGGtttttt
i mm10.chr9                 I 150 C 0
s canFam3.chr30                 46181 14 -  40214260 TTGGTCATTCAAAT
i canFam3.chr30             C 0 C 0
e calJac3.chrY                 222357 259 -   2853901 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=530930.000000
s hg38.chr15_KI270850v1_alt    187695 385 +    430880 C-ATTGTG--TCCTGGCCCTTCTGCAACTGGtgtgttg----------------ttttgttttgttt--tttttggttt---AGAGGTCTTATTTTTACCTCCTAGAATTGTCT-----TTTGCATAGTAATCTGTTTT--GTATTT--------------TGTGGATA---CAGTATCTTCTCAATTACTGCTAAAGATTCCAATTAGG-------TTTTAAAATTCT--GCTTATTTCCTTCATTAGCAGTGCTTCAGGTCATTCGT---GCTTCTTTG----ACTTGGCACCTTCCTTT-CAGGTTGCTAATTTTCTTCAACTCTCTGATAATACATGGTTATCTGTTCATTTATAGATGAGGTATACCTTTGATCAGTATGAGTTGTTA---TGAGTGTCTTCAG-AATTGTTACTCTTTTCTGCTGTGGCCTCCCCCTCCTGGTTTGCA
s panTro4.chr15              17710685 381 -  99548318 CCATTGTG--TCCTGGCCCTTCTGCAACTGGTGT---------------------TTTGTTTTGTTT--tttttggttt---aggggtcttatttttacctcctagaattgtct-----tttgcatagtaatctgtttt--gtattt--------------tgtggata---cagtatcttctcaattactgctaaagattccaattagg-------ttttaaaattct--gcttatttccttcattagcagtgcttcaggtcattcgt---gcttctttg----acttggcaccttccttt-caggttgctaattttcttcaactctctgatgatacatggttatctgttcatttataggtgaggtaTACCTTTGATCAGTATGAGTTGTTA---TGAGTGTCTTCAG-AATTGTCACTCTTTTCTGCTGTGGCCTCCCCCTCCTTGTTGGCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10049577 382 +  10928107 CCATTGTG--CTCTGGACCTTCTACAA---Gtgttttg----------------ttttgttttgttttgttttTGGTGT---GGGgatcttatttttacctcctagaattgtct-----tttgc-tagtaatctgtttt--gtactt--------------tgtggata---cagtatcttctcaattactgctaaagattccaattagg-------ttttaaaattct--ccttatttccttcattagcagtgcttcaggtcatttgt---gcttctttg----actcggcaccttccttt-cagatggctagttttctttaactctctggtaatacatggttatctgttcatttatagatgaggtaTACCTTTGATCAGTATGAATTGTTA---TGAGTGTCTTCAG-AATTGTCACTC--TTCTGCTGTGGCCTCCCCCTCCTGGTTTGCG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102141842 389 + 121039945 CCATTGTG--TCCTGGCCCTTCTACAACTGGTgttttgg-------------ttttttttttttttt--tttttggttt---aggGGTCTTATTTTTACCTCCTAGAATTGTCT-----TTTGCATAGTAATCTGTTTT--GTATTT--------------TGTGGATA---CACTATCTTCTCAATTACTGCTAAAGATTCCAATTAGG-------TTTTAAAATTCT--GCTTATTTCCTTCATTAGCAGTGCTTCAGGTCATTTGT---GCTCCTTTG----ACTTGGCACCTTCCTTT-CAGGTTGCTAATTTTCTTCAACTCTCTGATGATGCATGGTTATCTGTTCATTTATAGATGAGGTATACCTTTGATCAGTATGAGTTGTTA---TGAGTGTCTTCAG-AATTGTCACTCTTTTCTGCTGTGGCCTCCCCCTCCTGGTTTGCA
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59642336 386 + 162156779 CCATTGTA--CTCTGGCCCTTCtacaagtggttttttt----------------ttttttttttcat--tttttgattt---gGGGGTCTTATTTTTACCTCCTAGAATTGTCT-----TTTACATAGTaatctgtttt--gtattt--------------tgtggatA---CAGTATCTTCTCAATTACTGCTAAAGATTccaattaga-------ttttaaaattct--gtttatttccttcattagCAGTGCTTCAGGTCATTTGT---GCTTCTTTG----ACTTGGCACTTTCCTTG-CAGGCTGATAATTTTCTTCAACTCTCTGATGATACATGGTTATCTGTTCATTTATACATGAGGTATACCTTTGATCAGTATGAGTAGTTA---TGAGTGTCTTCAG-AATTGTCACTCTTTTCTGCTGTTACCTCCCCATCCTGGTTTGCA
i papAnu2.chr7              C 0 I 45191
s calJac3.chrY                 222616 356 -   2853901 -CATTGTA--CTCTGGCCCTTCTACAA---GTGT-----------------------------------TTTTTGGGGTGGAGGGGATCTTATCCTTA-CTTCTAGAATTGT-G-----CTTGCATAGTAACCtttttt--tttttttttttttttGTGTGTGTGGATG---CAATATCTTCTCAATTACTGCCAAAAATTCCAATTAGG-------TTTTTAAATTCT--ATTTATTTCCTTCAATAGTAGTGCTTCAGGTCATTTGT---GCTTACTTG----ACTTGGCACCTTCCTTT-CAGATTGCTTA-TCTCTTCAA--------------------------TTATTTATAGATGAGGTATACCATTGATCAGTATCAGTTGTTGATCCGAATGTCTTCAG-AATTATCACTCTTTTCTGCTGTGGCTGTCCCCTCCTGGTGTGCA
i calJac3.chrY              I 259 C 0
s mm10.chr9                  55173591 346 + 124595110 -ttttctt--ttactgtttttcttcaa---atgtttct---------------ttcttttttttttt--tttttCCTTC---AAATGT----TTCTTATTTCCTAGAGCTGTCTTGCCCTTTTTATAGTAACTTGTTCT---TGTTT--------------TGCGGGTG---CAGTAGCTTCTCAACAGGCA-TAATGATTCCAGTTAGA-------TTTTAG--------CTCTGTCTTCTTCACTAGTTGTGCTTCAGGCCATGTGTGTGGCTTTTCTG-----TGTGGTACCCT------CAGG--GTCTGTTTTCTTCA---------TGGTACTTGGTCATTTGCTTGTTTCTAGGAGAGGTATGGTATCAGCCAGTACCAGTTTTGA---CAGATTTCTGTAG-GAT----GCTTGTCTCTGTTGT------------CCAGTATGTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46195 428 -  40214260 CTATTGAGCTCTCTGGCCCTTCTACTA---GTGTTTttttttcccttttttctttatcttttttttt--tttttttttt---aagaaaatctttttgatttcccagaaccatcttttcctttgcata-taatcttttttttatattt--------------tgtgtatacagcagtgtcttctcaagtactgctaaggattccaattaggttttttttttttaaattattattttattttcttcattaataatgcttcaggtcacttgt---tcttttttgttcgacttggtgcctttttttccagattgcttgtgttcttcaaatatctggtgatacttggttacctgctcctttatagatgaagtataccattgatcattgtcagtggtggatgtgagtcccgtcagcaattgtCGCTCTTCTCTGCTGTGGCCTCCCCCTCCGGGTTTGTA
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=176054.000000
s hg38.chr15_KI270850v1_alt    188080 122 +    430880 GACCTGTGCTCTTCCTGTGGCATGAGGGTGGGGAGGTGCTGGCCAG-TGAGCTTTCCAGATTTTGAGCTAAAAGGA-AGAGGCAGAGTCTGTTATAAGATTTTGCTGCTGCATTGAGTTATATT----
s panTro4.chr15              17711066 122 -  99548318 GACCTGTGCTCTTCCTGTGGCATGAGGATGGGGAGGTGCTGGCTGG-TGAGCTTTCCAGATTTTGAGCTAAAAGGA-AGAGGCAGAGCCTGTTATAAGATTTTGATGCTGCATTGAGTTACATT----
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10049959 122 +  10928107 GACCTGTGCTCTTCCTGTGGCATGAGGATGTGGAGGTGCTGGCCAG-TGAGCTTTCCAGATTTTGAGCTAAAAGGA-AGAGGCAGAGTCTGTTATAAGATTTTGCTGCTGCATTGAGTTTTATT----
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102142231 122 + 121039945 GACCTGTGCTCTTCCTGTGGCATGAGGATGGGAAGGTGCTGGCCAG-TGAGCTTTCCAGATTTTGAGCTAAAAGGA-AGAGGCAGAATCCGTTATAAGATTTTGCTGCTGCATTGAGTTATATT----
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              32930 118 +    130206 GAACTGTGCTCTTCCTGTGGCATAAGGATGGGGAGGTGCTGGCCAG-TGAGCTTTCCAGATTTTGAACTAAAAGGA-AGA-GCAGAATCTGTTATAAGATTT---TGCTGCATTGAGTTATATT----
i papAnu2.JH685126          n 45191 C 0
s calJac3.chrY                 222972 122 -   2853901 GACCTCTGCTCTTCCTGTGGAATGAGGATGAGGAGGTCCTGGCCAA-TGAGCTTTCCAGTTTCTGAGCTAAAAGGA-AGAGGCAGAGTCTGTTATAACATTTTGCTGCTTCATTGAGTTATATT----
i calJac3.chrY              C 0 I 219
s mm10.chr9                  55173937  93 + 124595110 GACCTGGGTTCTG-CTGAAGCTGGAGGGTGG---------AGCTTG-TGCGGCTTCCAACTT--------------------CAGAGTGTGTTAGGAGATTTCATTCTTGGGTTGAGTTATAAT----
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46623 121 -  40214260 CACCTGTGTTCTGACTGTGGCATGTGAATGGGGAGGTACTGACAGGCCGACTTTTCCAACTCCTGAGTTACAGGAAGAGATGCA---TTTGTT---AGATTTTGTTGCT-TGTTGAGTTATATTTTTT
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=165723.000000
s hg38.chr15_KI270850v1_alt    188202 113 +    430880 AAAAAAACATTCTGTCTTTTCTCTCTGGTTTTGTCACTGATAG----AGACCATCA----AGACAGGCTTCCTAT-TACCAGAGTGATCCTTACCAACTATAGTTGGGACAAGTACAGTGAG
s panTro4.chr15              17711188 116 -  99548318 GAAAAAGCATTCTGTCTTTTCTCTCTGGTTTTGACACTGATAGTGAGAGACCATCA----AGACAGGCTTCCTAT-TACCAGAGTGATCCTTACCAACTATAGTTGGGACA-GTACAGTGAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10050081 116 +  10928107 AAAAAAA-ATTCTGTCTTTTCTCTCTGGTTTTGACACTGATAGTAAGAGACCATCA----AGACAGGCTTCCTAT-TAGCAGAGTGATCCTTACCAACTATAGTTGGGACAAGTACAGTGAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102142353 116 + 121039945 AAAAAAA-ATTCTGTCTTTTCTCTCTGGTTTTGACACTGATAGTAAGAGACCATCA----AGACAGGCTTCCTAT-TAGCAGAGTGATCCTTACCAACTATAGTTGGGACAAGTACAGTGAA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              33048 116 +    130206 AAAAAac-attctgtcttttctctctggttttgaaaCTGATAGTAAGACACCTTCA----AGATAGGCTTCCTAT-TAGCGGAGTGATCCTTACCAACTATAGCTGGGACAAGTACGGTGAA
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 223313 117 -   2853901 aaaaaaa-aaTCTGTCTTTTCTCTCTGGTTTTGACACTCATAGTAAAAGGCAATCA----AGATAGGCTTCCTATATAGGAGAGTGGTTGTTACCAACTGTAGTTAGGACAAGTACAGTAAA
i calJac3.chrY              I 219 C 0
s mm10.chr9                  55174030  89 + 124595110 -AAAGAG-GTTTTTCCTTTTCTCTTTGGTTCTACTGC-------------CCATCAGGGTAGATAGGGTTCCTATAGAATAGAATGGTCCTT--------TAATTAGAGCAA----------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46744 100 -  40214260 -----AA-AATGTGTCTTTTCTCTCTGGTTCTGACACCCCTAGTAAGAGGTCATCA----GATTAGGCCTCCTGT------------TCCTTACCAGCTGTAGTTGGAACAAATACAGCAAG
i canFam3.chr30             C 0 I 42
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=160899.000000
s hg38.chr15_KI270850v1_alt    188315 143 +    430880 GAAT----GATCCTTCAAACAGAAGTGGCCCCTCCATTATTTGGATTGTGTTTGTGGCTTTCTCGCGC---------------ccagcagtc--tgattccatctgctttgt---------------------atct-tctagcatgtccttatagttttggttcactaagggtattcttt----ttgta
s panTro4.chr15              17711304 147 -  99548318 GAATATTTGATCCTTCAAACAAAAGTGGTCCCTCCATTATTTGGATTGTGTTTGTGgctttcttgagc---------------ccagcagtc--tgattccatctgttttgt---------------------atct-tctagcatgtccttacagttttggttcactaagggtattcttt----ttgta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10050197 147 +  10928107 GAATGTTTGATCCTTCAAACAAAAGTGGTCCCTCCATTATTTGGATTGGGTTTGCGGCTTTCTCAAGC---------------CCAGCAGTC--TGATTCTATCTGCTTTGT---------------------ATCT-TCTAACATGTCCTTATAGTTTTGGTTCACTAAGGGTATTCTTT----TTGTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102142469 146 + 121039945 GAATGTTTGATCCTTCAAACACAAGTGGTCCCTCCATTATTTGGATTGGGTTTGTGGCTTTCTCGAGC---------------ccagcagtc--tgattccatctgctttgt---------------------atct-tctagcatgcccttatagttttggttcact-agagtattgttt----ttgta
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              33164 147 +    130206 GAATGTTTGATTCTTCCAACAGAAGTGGTCCCTCTATTATTTGGATTGGGTTTGTGGCTTTCTTGAGG---------------CCAGCAGTC--TGATGCCCTCTGCTTTGT---------------------GTCT-TCCAGCATGTCCTTATAGTTTTGGTTCACTAAGGgtattcttt----ttgta
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 223430 149 -   2853901 GATTGTTTGATTCTTTAA--AAAAGTGGTCTCTCCATTATTTGTATTGGGATTGTGGCTTTCTCAAGC---------------CCAGCAGTC--TGATTACATCTGCTTTGT---------------------GTCT-TCCAGTGTGTCCCTGTCGTTTTGGTTCACCAAGGATATTCATTCTCCTTGTA
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55174119 159 + 124595110 -----------CTTTCCAGCA-----GTTCATTCAGTTGTTT-------TCCTGTGGCTTTCTCAGTCAGGACATCTAAAACTTTAGCAACCATAGGATCCATCTGCTCTGTCTGCCGCTGCTATAGTTGTGGGTCTGTATATTGTTTTTCTATAGTTGTGGGTCTGTAA----ATTGTTT----TTCTA
i mm10.chr9                 C 0 I 188
e canFam3.chr30                 46844  42 -  40214260 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=62472.000000
s hg38.chr15_KI270850v1_alt    188458 55 +    430880 tttgttgttttgctgctgctgcagctgacttactctctttt----ataaaattctgtca
s panTro4.chr15              17711451 54 -  99548318 tttgttgttttgctgctgctgcagccgacttactctcttt-----ataaagttctgtca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10050344 55 +  10928107 TTTGTTGTTTTGCTGCTGCTGCAGCCGACTTACTCCGTTTT----ATAAAATTCTGTCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102142615 55 + 121039945 tttgttgttttgctgctgctgcagccgacttactctctttt----atgaaattctgtca
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              33311 55 +    130206 tttgttgttttgctgctgctgcagcaCACTTACCCTCTTtt----ataaaattctgtca
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 223579 59 -   2853901 TTTGTTTTTTTTCTGCTGCTGCAGTGGACTTACCCTTTTTTTTAAATAAAATTCTGTCA
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55174278 188 + 124595110 I
e canFam3.chr30                 46844 42 -  40214260 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=292163.000000
s hg38.chr15_KI270850v1_alt    188513 220 +    430880 tttcagtggggttttagaaagaggaccaggtCACATCTTGAAATGAAATTAATCTTAGGATTTCACAgccctaactcactttttgttttgattaaattacttcccctttttgacgggataggg----gctcagctttctcatgtgtaaaatgaaggctagtaactgggctagTGGTGACAGACCCAGA-------TGCATGTGAGAATCACCTCAGAGAGATTTTGCAAAA
s panTro4.chr15              17711505 218 -  99548318 tttcagtggggttttagaaagagggCCAAGTCACGTCCTGAAATGAAATTAATCTTAGGATTTCACAGCCCTAACTCACTTTTTGTTTTGATTAAATTACTTCCCCTTTTTGATGGGGTAGGG----GCTCAGCTATCTCATGT--AAAATTAAGGCTAGTAACTGGGCTAGTGGTGACAGACCCAGA-------TGCATGTGAGAATCACCTCAGAGAGCTTTTGCAAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10050399 220 +  10928107 TCTTAGTGGGGTTTTAGAAAGAGGACCAGGTCACATCTTGAAATGAAATTAATCTTAGGATTTCACAgccctaactgactttttgttttgattaaattacttcccctttttgacggggtaggg----gctcagctttctcaggcataaaatgaaggctagtaactgggctagGGGTGACAGACCCAGA-------TGCATGTGAGAATCACCTCGGAGAGCTTTTGCAAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102142670 215 + 121039945 tttcagtggggttttagaaagaggaccaggtCACATCTTGAAATGAAATTAATCTTAGGATTTCACAgccctaactcactttttgttttgattaaattacttcccctttttgacggggtaggg----gctcagctttctcatgtgtaaaatgaaggctggtaactgggctagTGGTGACAGACCCAGA-------TGCATGTGAGAATCA-----GAGAGCTTTTGCAAAA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              33366 219 +    130206 tttcagtGGGGTTTTAGAAAGAGgaccaggtcacatcttgaaatGAAGTTAATCTTAGGATTTCACAGCCCTAActcactttttgttttgattaaatTACTCCCCCTTTTTGAGGGGGAAGGG----GCTCAGCTTTCTCATGTGTAGAATGAAGGATAGTAAATGGGGTAGTGGTGACAGACCCAGG-------TGCCTGTGAGAATCACCTCAGAGAGCTTTT-CAAAA
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 223638 220 -   2853901 TTTCAGTGGGGTTTTGGAAAGAGGACCAGGCCAGATCTTGAAATGAAATTCATCTTAGGATTTCCCAGGCTTAACTCACTTTTTattttgattaaattacttactctttttgagggggtggag----tctcagttttctcatgtgtgaaatgaagggtaataactgttctgATGGTTACAGACCTGGA-------TGCGTGTTACAGTCACCTCAGAGATCTTTTTAAAAA
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55174466 223 + 124595110 TTTCAATGAGCTTTTGAAAAGAAGCTAGCCTTGCTTGTTAAAATGAAG---GCCTTAGGACTTCATGAGCCTAATTGGCTTTGTGTTTTTGTCAAATTACTTATCCTTT-----GGGGAAGGGTATTGCTTACCTTTCTCATTTATAAAATGTTAGGCAGGGACGAGTCTGATGGTCACAGACATAGGCTAGAGCTGCATGTCAGAATCACCTAAAATGCTTTTTAAAAAA
i mm10.chr9                 I 188 I 890
e canFam3.chr30                 46844  42 -  40214260 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=199481.000000
s hg38.chr15_KI270850v1_alt    188733 181 +    430880 GAGATTCTTTGGGTAGGCTTTGAAATTAGCATTTCAAAAATGCTCTTTCAACCATTGATGCAACCAAATTTTTTGGGACTTTGAGGCTAGGTATATATTCTTTAGATACCCAGAATAATTGGCTTTGGAATATAAGAATTTAGGGAAATGAAGAAGGGGTGAATTACATTTTGGAAGCTTC
s panTro4.chr15              17711723 159 -  99548318 CAGATTCTTCTG----------------------CAAAAATGCTCTTTCAACCACTGATGCAACCAAATTCTTTGGGACTTTGAGGCTAGGTATATATTCTTTAGATACCCAGAATAATTGGCTTTGGAATATAAGAATTTAGGGAAATGAAGAAGGGGTGAATTACATTTTGGAAGCTGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10050619 180 +  10928107 CAGATTCTTTGGGTAGGCTTTGAAATTAGCATTTCAAAAATGCTCTTTCAACAGTCCATGCAACCCAATTCTTTGGGACTTTGAGGCTAGGTATATATTCTTTAGATACCCAGAATAATTGGCTTTGGAATATAC-AATTTAGGGAAATGAAGAAGGGGTGAATTATGTTTTGGAAGCTGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102142885 181 + 121039945 CAGATTCTTTGGGTAGGCTTTGAAATTAGCATTTCAAAAATGCTCTTTCAACCACTGATGCAACCAAATTCTTTGGGACTTTGAGGCTAGGTATATATTCTTTAGATACCCAGAATTATTGGCTTTGGAATATAAGAATTTAGGGAAATGAAGAAGGGGTGAATTACGTTTTGGAAGCTGC
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              33585 181 +    130206 CAGATTCTTTGGGTAGGCTTTGAAATTAGCATTTGAAAAATGCTCTTTCAACCATTGATGCAACCAGATTCTTTGGGACTTTGAGGCTGGGTATATATTCTTTAAATACGCAGAATAATTGAATTTGGAATATAACAATTTAGGGAAATGAAGAAGGGGTGAATTCCATTTTGGAAGCTGC
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 223858 181 -   2853901 CGGATTCTCCGGGTGGGCTTTGAAATTAACATTTCAAAAATTCTCTTTCAACCATTGTTGCTACCAATCTCTTTGGGACTGTTAGGTTAGTTATATATTCTTTAGATACCCAGAACAGTTGGATTTGGAATATAACAATTTAGAGAAACGAAGGAGGGGTGCATTACATTTTGGAAGCTGC
i calJac3.chrY              C 0 I 209
e mm10.chr9                  55174689 890 + 124595110 I
e canFam3.chr30                 46844  42 -  40214260 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=1365.000000
s hg38.chr15_KI270850v1_alt    188914 1 +    430880 T
s panTro4.chr15              17711882 1 -  99548318 T
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10050799 1 +  10928107 T
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102143066 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              33766 1 +    130206 T
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 224248 1 -   2853901 T
i calJac3.chrY              I 209 C 0
e mm10.chr9                  55174689 890 + 124595110 I
e canFam3.chr30                 46844 42 -  40214260 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=153520.000000
s hg38.chr15_KI270850v1_alt    188915 106 +    430880 GCTTAGATACTGCTGAGACCTTTGT----TGGT----CTTGATTTCTGGATCCTAGTTTCTAGATCTTTTACATATTCTGAGTTCTAATCTGAACTGGCCTTTATGGTTAAAGC
s panTro4.chr15              17711883 106 -  99548318 GCTTAGATACTGCTGAGACCTTTGT----TGGT----CTTCATTTCTGGATCCTAGTTTCTTGATCTTTTACATATTCTGGGTTCTAACCTGAACTGGCCTTTATGGTTAAAGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10050800 106 +  10928107 GCTTAGATACTGCTGAGACCATTGT----TGGT----CTTCATTTCTGGATCCTAGTTTCTTGATCTTTTACATATCCTGGGTTCTAACCTGAACTGGCCTTTATGGTTAAAGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102143067 106 + 121039945 GCTTAGATGCTGCTGAGACCTTTGT----TGGT----CTTGATTTCTGGATCCTAGTTTCTTGATCTTTTACATATTCTGAGTTCTAACCTGAACTGGCCTTTATGGTTAAAGA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              33767 106 +    130206 GTTTAGATGCTGCTAAGACCTTTGT----TGTT----CTTGATTTCTGGATCCTAGTTTCTTGAtcttttacatattctggattcTAACCTGAACTGGCCTTAATGGTTAAAGA
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 224249 109 -   2853901 GCTTAGATAGAGTTGAGACCTTTGT----TGGTCTTACTTGATCTCTGGATCCTAGTTTCTTGATC-TTTACATATTCTGAGTTCTAACCTGAACTGGCCTTCATGTTTAAAGA
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55175579 109 + 124595110 GCCTTGAGACTCCTAAGATCCTGGTGTTCTGAT-----TTGATCTCTGAGTCCTAGTTTCTTGATGTTTTAGATATTCTGGGTCCCAAACTAAACCTACCTTTATGAATACAGA
i mm10.chr9                 I 890 C 0
e canFam3.chr30                 46844  42 -  40214260 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=1164542.000000
s hg38.chr15_KI270850v1_alt    189021 808 +    430880 TGCATAT-ATATACTGTGTCCTGGC-CAGGAAGCTTGTCTTTTGACCTTTGCCCGAACTGGGTACGAAAGCCCCTCCTAAAAATTCATTAGATTCATTTCTGAACTTGATAA-T----TGTAATT--TGTGTTAAT---TGGTAAATTGTGTCTTGTAGAGAGATATTCGATAGTAAATTACATGTTTTTAAAAAGACAATTTGCTTTATAGTGAGGTGGTAATCAATTCATAA-CTCTTAGTTTTGGGGAGCGTCTATTGTAAGTAACACATCTGACCTCTTAAAATGTAAGGAAATTGAATTTATGTAATGATTCA-GGCTTTTCAAA-------GTTAAAAAGGTAGCTGTTTTGAGGAACTGATAGTTTGGAATA-TTTATTTTAAACAAAATAAGCCTTTGATCTTATGCACATAGCCGTACAAGTAAAATGTTTTCTTATTTTAAATTAGATTATGTTTTAGA-ATTTTTTTCAGTTTTGCTTTATATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATCCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACTGTTGTTTGTCAAATCAAAGTTGGATTTAAAAATGCATATTTTAATTTTAATAAGCTCTTTGGTAGTGGGACTGCAGTGACAGATGGTTGGGAGTTTGTCCCTAAAGCTGTGACACCAATCTTCTAA-----------TGTGCA-------TATTTGTTCTGTGTAGTTCTGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAAGAAGTGACTTCAAAAGAAGACGAA---GAGGAAGAGATGGATGAAGTGGGTATTTTATATAAGAATA
s panTro4.chr15              17711989 807 -  99548318 TGCATAT-ATATACTGTGTCCTGGC-CAGGAAGCTTGTCTTTTGACCTTTGCCCAAACTGGGTACGAAGGCCCCTCCTAAAAATTCATTAGATTAATTTCTGAACTCGATAA-T----TGTAATT--TGTGTTAAT---TGGTAAATTGTGTCTTATAGAGAGATATTTGATAGTAAATTACATGTTTTTAAAAAGACAATTTGCTTTATAGTGAGGTGGTAATCAATTCATA--CTCTTAGTTTTGGGAAGTGTCTATTATAAGTAACACATCTGACCTTTTAAAATGTAAGGAAATTGAATTTATGTAATGATTCA-GGCTTTTCAAA-------GTTAAAAATGTAGCTGTTTTGAGGAATTGATAGTTTAGTGTA-TTTATTTTAAACAAAATAATCCTTTGATCTTATGCACATAGCCGTACAAGTAAAATGTTTTCttattttaaattagattatgttttaaa-atttttttCAGTTTTGCTTTATATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATTCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACTGTTGTTTGTCAAATCAAAGTTGGATTTAAAAATGCACATTTTAACTTTAATAAGCTCTCTGGTAGTGGGACTGCAGTGACAGATGGTTGGGAGTTTGTCACTAAAGCTATGACACCAGTCTTCTAA-----------GGTGCA-------TATTTGTTCTGTGTAGTTCTGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAAGAAGTGACTTCAAAAGAAGAGGAA---GAAGAAGAGATGGATGAAGTGGGTATTTTATATAAGAATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10050906 805 +  10928107 TGCATTT-ATATACTGTGTCCTGGC-CAGGAAGCTTGTCTTTTGAACTTTGCCCAAACTGAGTATGAAGGCCCTTCCTAAAAATTCATTAGATTCATTTCTGAACTTGATAA-T----TGTAATT--TGTGTTAAT---TGATAAATTATGTCTTGTAGAGAGATATTTGATAGTAAATTACATGTTTTTAAAAAGACAATTTGCTTTATAGTGAGGTGGTAATCATTTCATAA-TTCTTAGTTTTGGGAAGTGTCTATTATAAGTAACACATCTGACCTCTTAAAATGTAAGGAAATTGAATTTATGTAATGATTCG-GGCTTTTCAAA-------GTTAAAAAGGTAGCTGTTTTGACGAACTGATAGTTTGGGATA-TTTATTTTAAACAAAACAAGCCTTTGATCTTATGCACATAGCCATACAAGTAGAATGTTTTCttatttttaattagattatgttttaaa-atttttttCAATTTTGCTTTATATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATCCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACCGTTGTTTGTCAAATCAAAGTTGGATTTAAAAATGCACATTTTAATTTTAATAAGCTCTTTGGTAGTGGGACTGCAGTGACAGATGGTTGGGAGTTTGTCCCTAAAGCTATGACACCAGTCTTCTAA-----------GGTGCA-------TATTTGTTCTATGTAGCCCTGGCAGATTCTTTCTCTATTTCCGAATGGGACAACAGAAGAAGTGACTTCAAAAGAAGACGAA------GAAGAGATGGCTGAAGTAGGTATTTTATATAAGAATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102143173 805 + 121039945 TGTATTT-ATATACTGTATCCTGGC-CAGGAAGCTTGTCTTTTGACCTTTGCCCAAACTGGGTACAAAGGCCCCTCCTAAAAATTCATTAGATCCATTTCTGAACTTGATAA-T----TGTAATT--TGTGTTAAT---TGGTAAATTGTGTCTTGTAGAGAGATATTTGATAGTAAATTACATGTTTTTAAAAAGACAATTTGCTTTATAGTGAGGTGGTAATCAATTCATAA-CTCTTAGTTTTGGGAAGTGTCTATTATAAGTAACACATCCGACCTCTTAAAATGTAAGGAAATTGAATTTATGTAATGATTCA-GGCTTTTCAAA-------GTTAGAAAGGTAGCTGTTTTGAGGAATTGATAGTTTGGAATA-TTTATTTTAAAGAAAATAAGCCTTTGATCTTATGCACGTAGCCGTACAAGTAAAATATTTTCTTATTTTAAATTAGATTATGTTTTAAA-ATGTTTTCCAGTTTTGCTTTCTATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATCCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAAC---TATTTGTCAAATCAAAGTTGGATTTAAAAATGCACATTTTAATTTTAATAAGCTCTTTGGTAGTGGGACTGCAGTGACAGATGGTTGGGAGTTTGTCCCTAAAGCTATGACACCAGTTTTCTAA-----------TGTGCA-------TATTTGTTCTGTGTAGCCCTGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAAGAAGTGACTTCAAaagaagacgaa---gaagaagaGATGGATGAAGTGGGTATTTTATATAAGAATA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              33873 804 +    130206 TGCATTT-ATATACTATGTCCTAAC-CAGGAAGCTTATCTTTTGAACTTTGCCCAAACTGGGTATGAAGGCCCTTCCTAAAAATTCATTACATTCATTTCTGAACTTGATAA-T----CGTAATT--TGTGTTAAT---TGGTAAATTATGTCTTGTAGTGAGATATTTGATAGTAAAtcacatgcttttaaaaagaaaatttgctttaTAGTGAGgtggtaatcatttcataa-tTCTTAATTTTGGGAAGTGTCTACTATAGGTAACACatatgatcttttaaaatgtaaggaaATTGAATTTATGTAATGATTCA-GGCTTTTCAAA-------GTTACAAAGGTAGCTGTTTTGAGAAGTTGATAGTTTgggaca-tttattttaaacaaagtaaGCCTTTGATCTTATGCACCTAGTCATATAAGTAAAATGTTTCCTTATTATAAATTagattacattttaaa-gttttttttcatttttctttatatttgactgattgcttttctttattctgaAGGCATCCATTAAGTTAACTTGTTCAAAATCgtttcattttgaaaagttgaGAACTATTGTTTGTCAAATCAAAGttggatttaaaaatacacattttaattttaataagctcTCTGGTAGTGGGACTGCAGTGACAGATGGTTGGGAGTTTGTCCCTAAAGCC-TGACACCAGTCTTCTAA-----------TGTGCAT------TATTTGTTCCGTGTAGCCCTGGAagattctttctctattttcaaatGGGACAAAAGAAGAAGTGACttc-aaagaagaggaa------gaagagatggcTGAAGTAGGTATATTATATAAGAATA
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 224358 806 -   2853901 TGCATTT-TTATAGTGTGTCCTGGC-CAGGAAGCTTATCTTTTGAACTTTGCTAGAAATGGATATGAAGGCCTTTCCTAAAACCCCATCAAATTAATTTCTGAACTTCATAAGT----AGTAAAT--TGTGTAAAT---TGGTAAGTTGTGTATTGTAGAGAAGTATTTTGTAGTAAATAACG---TTTTAAAAAATAAATTTACTTCTTAGTGAGGTG---ATCACTTCATAA-TTCTTGGTTTTGTGAAATATCTGTTATAAATAACCCATCTGACCTTTCAAAATGTAAGGCAATTGAATTTATGTAATGATTCA-GGCTTTCCAAA-------GTTAAAAAGGTAGCTATTTTAAGGAATCGATAGTTAGGGATATTTTATTTTAGACAAAATAAGCCATT-ATCTTATGCATATTGCCATATAAGTAAGTTGTTTTATTCTTTTAAGTTCGATAATGTTTTAACTTTTTTTTTCTGTTTTGCTTTATATTTG-----TTGCTTTTCTTTATTCCTAAGGCATCAGTTAAATTGAATTGTTCAAAATTGTTTAATTTTTTAAAGTTCATAGCTATTATTTGTT-AGTCAAAGCTGGATTTAAAGATAAACATTTTAATTTCAATAAACTC--TGGGAGTGAAACTGTACTGACAGATAGTTGAGATTTTGTCCCTAAAGCTATGGCACCAGTGTTCTAATGTACTCAGCCTGTGCA-------TATTTGTTCT-TGTAGCCCTG---GATTCTTTCTGTGTTTCAGAATGGGACAACAGAAGAAGTGACTTCagaagaagatgaagaagaagaagaGATGGCTGAAGTAGGTATTTTATATAAGAATA
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55175688 580 + 124595110 TATATTTCCCATATTGAGAGATGGC------------------AAACTTTGCTCTGGCAAGAGAC---------------------------TTCATGTGCG-ACTGTAAAA-TCCCACGTGACTGCTGTGTGGATGAGTAGCAAGCCCTGCCTTA-GGAGAGGTGCTTCACAGCAGAT------------------AGACTGGCTCT------------CAGTCACTCTCAAG-TACTTACTTCT------------TTATAA------CATCTCACCATTTAAAATGCAAGGCAGATGAATTTATAGAAAAATCAATGGTTTTTTGGAGGGGGGTGTTAATTGGGTAGA-----TAAGGAAAGAATAATTTGGATCA-TTTATTAGAGTAGAA---------------------------CATATAAGTAAAA--------AAATTAAAATTAGGTTATCTTT---A-GTTTTT---AAATTTCTTTTATATTTGA--------TTCCCTTTGTTCTTAAGGCATCTGCTACATTGGATT---------------------------------------------------------GACTTGAAATTA-----------TTTAATAAGCTC--TGCTCATGGGACTGTAGTGACAG-TGACTAATAGTG------------------GCCAGCTTTCCTA-----------TGTGCT---------------CTGTATAGCGTTGGCACAGTCTTTCTCTGTTTCAGAATGGGACAACTGAAGAAGTAACTTCAGAAGAAGAGGAA---GAGGAGGAGATGGCTGAAGTAGGTAT-TTATGTAAGAATA
i mm10.chr9                 C 0 I 248
s canFam3.chr30                 46886 759 -  40214260 TGCAT-T-GTGAACTCTGCTCTGGTTCAGAAAACTTG---------------CCAAACTAGGTATGAAGACCCTGCCTAAAATCCCGTCAGATTCT-----------------T----TGTGAGT--------GAG---TGGTAAATTGTACCTTGTAGAGAAGTATTCTGTGGTAGGTGACATGCTGTGAAAAAGAAAAATGGTTCTTTAGTGAAATGGTGATCATTTTATAATTTTTTAGTTTTGTGAAATGTCTACTTTC--TAACACGTTTTACCTTTTATAATGTAAGGCAGTGGAATTTATGGAAAGAATCA-AGCCTTCCAAA-------GTTAAGAAGGTAGCTATTTTAAGGAATACATGGTTTGGGATA-TTTATTTCAAGTGAAAGAAGCTGTTGACCTTATATACATAGCCCTATACGTGAAATGTTTCCTTATTTTGAATTAGG--ATGTTCTAAA-TTTTTTTCCAGTTCTGCTTTATATTGGACTATTTGCCATT-GTTATTCTCAAGGTATCTATTAAGTTGAATTGGTCAAAATTGTTTCATTTTCAAAAGCTGATAGATATTACTTGTCACATCAAAGCTGGATTTAAAAGTAAATA-TTCAACTTTAGTAAATTC--TGTTAGTGGAACTGTAGCGATAGAAGATTGATAGTTTGTCCCTAA------------AGTCTTCTAA-----------TGTACTCAGTATGTGCTTATTCTGTGTGGCCCTAGCAGATTCTTTTTCCTTTTCAGAATGGGACCACAGAAGAAGTGACTTCAGAAGAAGAGGAA---GATGAGGAGATGGCTGAAGTAGGTATTTTATGTGAGAATC
i canFam3.chr30             I 42 C 0
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=4692.000000
s hg38.chr15_KI270850v1_alt    189829 3 +    430880 ACA
s panTro4.chr15              17712796 3 -  99548318 ACA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10051711 3 +  10928107 ACA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102143978 3 + 121039945 ACA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              34677 3 +    130206 ACA
i papAnu2.JH685126          C 0 C 0
s calJac3.chrY                 225164 3 -   2853901 ACA
i calJac3.chrY              C 0 I 6
s canFam3.chr30                 47645 3 -  40214260 ACC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55176268 248 + 124595110 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=6550.000000
s hg38.chr15_KI270850v1_alt    189832 10 +    430880 TTATggccag
s panTro4.chr15              17712799 10 -  99548318 TTTTggccag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10051714 10 +  10928107 TTTTggccag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102143981 10 + 121039945 TTTTggccag
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              34680 10 +    130206 TTTTggccag
i papAnu2.JH685126          C 0 C 0
s canFam3.chr30                 47648  8 -  40214260 -TTTTATAA-
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167  6 -   2853901 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=153331.000000
s hg38.chr15_KI270850v1_alt    189842 191 +    430880 gcgaggtgactcatgcctgtaaccccagcactatgggaggccatggtgggtggatcacctgaggacaggagtttgagaccagcctggccaacatggcgaaactctgtctctatta---aaagtacaaaaattagccgggcatggtggtaggcacatgtaatctcagctactccggaggctgaggcaggagaatt
s panTro4.chr15              17712809 191 -  99548318 gtgaggtgactcatgcctgtaaccccagcactatgggaggccatggcgggtggatcacctgaggacaggagtttgagaccagcctggccaacatggcgaaactctgtctctacta---aaagtacaaaaattagccgggcgtggtggtaggcacatgtaatctcagctactcaggaggctgaggcaggagaatt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10051724 188 +  10928107 gcgaggtggctcatgcctgtaaccccagcactgtgggaggccaaggtgggcagatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaactttgtctctacta---aaagtacaaaa---agccgcatgtggtggtgggcacctgtaatctcagctactcaggaagctgaggcaggagaatc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102143991 194 + 121039945 gcgaggtgactcatgcctgtaactccagcactatgggaggccatggtgggtggatcacctgaggacaggagtttgagaccagcctggccaacatggcgaaactctgtctctactaagtaaagtacaaaaattagctgggcatggtggtgagcacatgtaatctcagcaactcaggaggctgaggcaggagaatt
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              34690 191 +    130206 gccaggtggctcatgcctgtaaccccagcactatgggaggccaaggggggcagatcagctgaggtcaggagtttcagaccagtctggccaacgtggcaaaactctgtctctacta---aaagtacaaaaattagctgggcgtggtggtgggcacctgcaatctcagctactcagcaggctgaggcaggagaatg
i papAnu2.JH685126          C 0 C 0
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167   6 -   2853901 I
e canFam3.chr30                 47656   0 -  40214260 C
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=84719.000000
s hg38.chr15_KI270850v1_alt    190033 69 +    430880 gcttgaatccaggaggtggaggttgcagtgagccaagatcgtgccactgcactcctgcctgagtgac--ga
s panTro4.chr15              17713000 69 -  99548318 gcttgaatccgggaggtggaggttgcagtgagccaaggtcgtgccactgcactcctgcctgagtgac--ga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10051912 71 +  10928107 gcttgaacccgggaggtggaggttgcagtgagccaagatcgtgccactgcactcctgtctgggcgacaaga
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144185 69 + 121039945 gcttgaatccgggaggtggaggttgcagtgagccaaggtcgtgccactgcactcctgcctgagtgac--aa
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              34881 69 +    130206 gcttgaacccgggatggggaggttgcattgagccaagatcgtgccactgcactcctgtctgggtgac--aa
i papAnu2.JH685126          C 0 I 2
s chlSab2.chr29              21063693 69 -  24206276 gcttgaacccgggaggtggaggttgcagtgagccaagagtgtgccactgcactccagtctgggtgac--aa
i chlSab2.chr29             I 1 I 10
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167  6 -   2853901 I
e canFam3.chr30                 47656  0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=5683.000000
s hg38.chr15_KI270850v1_alt    190102 11 +    430880 gcaagactctt
s panTro4.chr15              17713069 10 -  99548318 gcaagactct-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10051983 10 +  10928107 gtgagactct-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144254 10 + 121039945 gcaagactct-
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              34952 10 +    130206 gcgacactct-
i papAnu2.JH685126          I 2 C 0
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167  6 -   2853901 I
e canFam3.chr30                 47656  0 -  40214260 C
e chlSab2.chr29              21063762 10 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=20646.000000
s hg38.chr15_KI270850v1_alt    190113 27 +    430880 gtctcaaaaaaaaaaccaaaaaaaaTC
s panTro4.chr15              17713079 27 -  99548318 gtctcaaaaaaaaaaaaaaaaaaaaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10051993 21 +  10928107 gtctcaaaaaa------aaaaaaaaTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144264 24 + 121039945 gtctcaaaaaaaaa---aaaaaaaaaC
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              34962 23 +    130206 gtctc-aaaaaaaa---agaaaaaatc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21063772 24 -  24206276 gtctcaaaaaaaaa---aaaaaaaaTC
i chlSab2.chr29             I 10 C 0
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167  6 -   2853901 I
e canFam3.chr30                 47656  0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=3822.000000
s hg38.chr15_KI270850v1_alt    190140 2 +    430880 AT
s panTro4.chr15              17713106 2 -  99548318 at
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10052014 2 +  10928107 AT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144288 2 + 121039945 AT
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              34985 2 +    130206 at
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21063796 2 -  24206276 AT
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 47656 2 -  40214260 AT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167 6 -   2853901 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=273.000000
s hg38.chr15_KI270850v1_alt    190142 1 +    430880 A
s panTro4.chr15              17713108 1 -  99548318 a
i panTro4.chr15             C 0 I 18
s canFam3.chr30                 47658 1 -  40214260 A
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167 6 -   2853901 I
e chlSab2.chr29              21063798 0 -  24206276 C
e papAnu2.JH685126              34987 0 +    130206 C
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C
e nomLeu3.chr6              102144290 0 + 121039945 C
e ponAbe2.chr15_random       10052016 0 +  10928107 C

a score=251714.000000
s hg38.chr15_KI270850v1_alt    190143 114 +    430880 AAATATCTTCAGTTTTGGACATTTGAGTAATTCTCTAATC-TCCTTTATAAATAACTATTAATATGGAATAATTGAAAGCACGTCGTATTTGGAATGGAATGTAATTTATAAATT
s panTro4.chr15              17713127 114 -  99548318 AAATATCTTTTGTTTTGGACATTTGAGTAATTCTCTAATC-TCCTTCATAAATAACTATTAATATGGAATAATTGAAAGCACATCGTATTTGGAATGGAATGTAATTTATAAATT
i panTro4.chr15             I 18 C 0
s ponAbe2.chr15_random       10052016 114 +  10928107 AAATATCTTCAGTTTTGAACATTTGAGTAATTCTCTAATC-TTCTTTATAAATAACTATTaatgtggaataattgaaagcacattatatttggaatggaatgtaatttataaatc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144290 114 + 121039945 AAATATCTTCAGTTTTGGACATTTGAGTAATTCTCTAATC-TCCTTTATAAATAACTATTAATATGGAATAATTGAAAGCACGTCATATTTGGAATGGAATGTAATTTATAAATT
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              34987 114 +    130206 aaatatcttCAGTTTTGAACATTTGAGCAATTCTCTAATC-TCCTTTATAAAAAACTACTAATGTGGAATAATTGAAAGCACATCATATTTGGAAtgcaatttaatttataaatt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21063798 113 -  24206276 AAATATCTTCAGTTTCGAACATTTGAGTAATTCTCTAATC-TCCTTTGTAAGTAACTACTAATGTGGAATAATTGAAAA-ACATTGTGTTTGGAATGGAATGGAATTTATAAATT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 225173 110 -   2853901 AAATCTCTTCATTTTTGGACA--CGAGTAATTTTCTAATCTTTTTTTATA---GACTATTAATATGGAGTAATTGAAAGCACGTTGTGTTTGGAATGGAGTATAATTTATAAATT
i calJac3.chrY              I 6 C 0
s mm10.chr9                  55176516 113 + 124595110 GAATACCTTAATATTTGATCATTTTAGTAATCCTTTAATC-TTCTTTTTGAAGTAATATTAGTGTTGAATAA-CAAAAACATTTGGTATTTCAAATGAGATATACTTTCTAAAAT
i mm10.chr9                 I 248 C 0
s canFam3.chr30                 47659 114 -  40214260 CTGTATCTTCATTTTTGAATATTTTAGTAATACTCTAATC-TCCTTTATAAACCAGTGTTAATGTAGAATAATGAAAACCACATTGTATTTGAAATTTAATGTAATTTCTAAAAT
i canFam3.chr30             C 0 I 236
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=403629.000000
s hg38.chr15_KI270850v1_alt    190257 203 +    430880 CTGGCTTTACCTCTAACTCATGATATGCCTTCGGGCAAATTG-TTTTATCTGAATTC-TTGGATTTGATTTTCTGGAAAACAAAAGCTCTTAACTTTTAGCACTAAAATTATATT------TAATACTAATCAGTACTTAACCTGT-ATTTGGTTATTTTTTGGAAGAGAAACTACTGAGTTTAAAAAATTTTATGTTTGCATAAAAGGAGA
s panTro4.chr15              17713241 203 -  99548318 CTGGCTTTACCTCTAACTCATGATATGCCTTTGAGCAAATTG-TTTTATCTGAATTC-TTGGATTTTATTTTCTGGAAAACAAAAGCTCTTAAGTTTTAACACTAAAATTATATT------TAATACTAATCAGTACTTAACCTGT-ATTTGGTTATTTTTTGGAAGAGAAACTACTGAGTTTAAAAAATTTTATGTTTGCATAAAAGGAGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10052130 203 +  10928107 ctggctttatctctaactcatgatatgcctttgagcaaattg-ttttatctgaattc-ttggatttgattttctGGAAAACAAAAGCGCTTAACTTTTAGCACTAAAATTATATT------TAATACTAATCAGTACTTAACCTGT-ATTTGGTTATTTTTTGGAAGAGAAACTACTGAGTTTTAAAAATTTTATGTTTGCATAAAAGGAGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144404 204 + 121039945 CTGGCTTTACCTTTAACTCATGATATGTCTTTGAGCAAATTGTTTTTTTCTGAATTC-TTGGATTTGATTTTCTGGAAAACAAAGGCTCTTAACTTTTAGCACTAAAATTATATT------TTATACTAATCAGTACTTAACCTGT-ATTTGGTTATGTTTTGGAAGAGAAACTACTGAGTTTAAAAAACTTTATGTTTGCATAAAAGGAGA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35101 199 +    130206 ctgGCTTTAA--CTAATTCATGATATGCCTTTGAGCACATT--TTTTATGTGAATTC-TTagattt-attttctggaaaacaaaagctCTTAACTTTTAGCGctagaattatatt------ttatactaATCAGTACTTAACatgt-atttggttattttttggaagagaaactactgagtttaaaaaattttatgcttGCATAAAAGGGGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21063911 203 -  24206276 CTGGGTTTACCTCTAACTCATGATATGCCTTTGAGCAAATTG-TTTTATGTGAATTC-TTGGATTTGGTTTTCTGGAAAACAAAAGCTCTTAACTTTTAGCACTAAAATTATATT------TAATACTAATCAGTATTTAACCGGT-ATGTGGTTATTTTTTGGAAGAGAAACTATTGAGTTTTAAAAATTTTATGTTTGCATAAAAGGAGA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 225283 202 -   2853901 CTGGCTTCACCTCTAAGTCATGATATGCCTTTGAGCAA-----ATTTATCTGAATTCTTTGGATTTGATTTCCTGGAAAACAAAAGCTCTTAACTTTTAGCACTCAAATTATATTTACATCTAATACTAATCAGTACTTAACCTGT-ATTTGGTTATTTTTAGGAAGGGGAAGTA---AGCTTAAAAAA-TTTATGTTCGAATAAAAGGAGA
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55176629 158 + 124595110 CTGGTTTTGTTTCTAATTAACAATATGCCTTTGAACAAATTTTTTTTATTTGAGGGC---------------------AGTAAAAATTGT------------------TTACATT------TAATAAT----AGTATTTTGCTTATAATTTGGTTAATTTTAGGAA---AAACTACTAAGTTT--AAAGTTTTGTGTTTACAgttggggaga
i mm10.chr9                 C 0 I 1459
s canFam3.chr30                 48009 182 -  40214260 cTGGCTTTAGCTTTAACTAATGATATGTTTTTGAGCAAAATG-CTT-------ATTC---------GATTTCCTAGAAAATAAATGCTCTTAACATTTAGCattaaaattatatttacattttatattaatcaatatttaaCTCAT-ATTTGGTTGTTTTTAAGAAGAGGAACTAT----TTTCAAAAATTCTGGATTTAAATA--------
i canFam3.chr30             I 236 C 0
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=124193.000000
s hg38.chr15_KI270850v1_alt    190460 62 +    430880 ATTTCAGAATATTTTAGAGACTACTTGCCAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
s panTro4.chr15              17713444 62 -  99548318 ATTTCAGAATATTTTAGAGACTACCTGCCAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10052333 62 +  10928107 ATTTGAGAATATTTTAGGGACTACTTGCTAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144608 62 + 121039945 ATTTCAGAATATTTTAGAGACTACTTGCCAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35300 62 +    130206 ATTTGAACATACTTTATGGACTACTTGCCAGAAGTAGTGAAACTGTCTCTTGTTGAAAGCTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21064114 60 -  24206276 ATTTGAGAATATTTTAGGGACTACTTGCTGGAGGTAGTGAAACTGTCTC--GTTGAAAAATC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 225485 62 -   2853901 ATTTGAGAAAATTTTACAGACTAATCACCGGAAGTAATGAAACTGTCTCTTGTTGAAAAATC
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 48191 62 -  40214260 ATTTGAGAACATTTCAGGGACTACTCACTAGAAGTAATGAAGATATCTCATGTTGAAAAATC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55176787 1459 + 124595110 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=483829.000000
s hg38.chr15_KI270850v1_alt    190522 287 +    430880 ATTCAAAGAAATTtgtcttagtctgttttatagtattgtaacagaataacagagagtgagtaatttatgaagaacagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttggtgtctcaggaccttcttgtttcatcctcacatgg-tagcaggcagaagggcaggagagcaagctagtccaatgtgtgaagcctcattcataagggccttaatcccatgaaggagaaaggagccctcttggcctaatcatctcttaaaagt
s panTro4.chr15              17713506 287 -  99548318 ATTCAAAGAAATTtgtcttagtctgttttatagtattgtgacagaataagagagagtgagtaatttatgaagagcagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttggtgtctcaggaccttcttgttttatcctcacatgg-tagcaggcagaagggcaggagagcaagctggtccaatgtgtgaagcctcattcataagggccttaatcctatgaaggagaaaggagccctcttggcctaatcacctcttaaaagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10052395 287 +  10928107 ATTCAAAGAAATTtgtctcagtctgttttatagtgttgtaacagaataacagaaagtgagtaatttatgaaggacagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatataaacatttggtgtctcaggaccttcttgtttcatcctcacatgg-cagcaggcagaagggcaggagagcaagctagtccaatgtgtgaagcctcattcataagggccttaatcccatgaaggagaaaggagccctcttggcctaatcacctcttaaaagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144670 287 + 121039945 ATTCAAAGAAATTtgtcttagtctgttttatagtgttgtaacagaacaacagagagtgagtaatttatgaagaacagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttggtgtctcaggaccttcttgtttcatcctcacatgg-tagcaggcagaagggcaggagagcaagctagtccaatgtgtggggcctcgttcataagggccttaatcccatgaaggagaaaggagccttcttggcctaatcatctcttaaaagt
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35362 285 +    130206 ATTCAAAa--atttgtcttagtctgttttatggtgttttaacaaaataagagagagtgagtaatttataaagaacagtcCTTTcttttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttggTGTCTCAGGGCCTTCTTGTTGCATCCTCACATAG-TAGCAGGCAGAAGGGCAGGAAAGCAAGCTAGTCCATCGTGTGAAGCCTCATTCATAAGGGCCTTAATCCCATGAAGGAGGAAGGAGCCCTCTTGGCCTAATAACCTCTTAACAGT
i papAnu2.JH685126          C 0 I 1
s chlSab2.chr29              21064174 287 -  24206276 ATTCAAAGACATTtgtcttagtctgttttatagtgttgtaacagaataacagagagtgagtaatttataaagaacagtcatttattttctgactgttctggagtctgggaaatccaagatgaaaatatcaacatttggtgtctcagggccttttcattgcatcctcacatgg-tagcaggcagaagggcaggagagcaagttagtccaatgtgtgaggcctcattcataagggccttaatcccatgaaggaggaaggagccctcttggcctaatgacctcttaaaagt
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 225547 286 -   2853901 A-TCAAAGAATTTtgttttagtctgttttatgctgttataacagaatactggagactgggtaatttatacagaacagacatttattttcccactgttctggaggct-ggaagtccaagatcaagataccagcatttggtgtctgagggcctttttgttgcattctcacatggatagaaagcagaagggcaggagagtaagctagtccagtgtgtgaagcctcattcatgagggccttaatcccattaaggaggaaggagccctcttggcttaatctcctcttaaaggt
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55176787 1459 + 124595110 I
e canFam3.chr30                 48253   0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=6125.000000
s hg38.chr15_KI270850v1_alt    190809 6 +    430880 cctacc
s panTro4.chr15              17713793 6 -  99548318 cctacc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10052682 5 +  10928107 cct-cc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144957 6 + 121039945 cctacc
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21064461 6 -  24206276 cctacc
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 225833 6 -   2853901 cctacc
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55176787 1459 + 124595110 I
e canFam3.chr30                 48253 0 -  40214260 C
e papAnu2.JH685126              35647 1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=69911.000000
s hg38.chr15_KI270850v1_alt    190815 53 +    430880 tcttaatatcatcacattggc------aacacttgaattttggagggaatacattcaaa
s panTro4.chr15              17713799 53 -  99548318 tcttaatatcatcacattggc------aacacttgaattttggagggaatacattcaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10052687 53 +  10928107 tcttaatatcatcacattggc------aacagttgaattttggaggaaatacattcaca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102144963 53 + 121039945 tcttaatatcgtcacattggc------aacagttgaattttggagggaatacattcaaa
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21064467 59 -  24206276 tgttaatatcatcacgctgacaacatgaacagatgaattttggagggaatacattccaa
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 225839 53 -   2853901 tcttaataagatcacattggc------aacacctgaattttggagggaacacattcaaa
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55178246 51 + 124595110 TCTTAATACTATCATAACACC-------ATACCTGATTTTTGGAGGGGA-ACATTTAAA
i mm10.chr9                 I 1459 C 0
e canFam3.chr30                 48253  0 -  40214260 C
e papAnu2.JH685126              35647  1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=391849.000000
s hg38.chr15_KI270850v1_alt    190868 294 +    430880 cagtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCCTAGGC-----CAGCTGTCAGTCATGGGTATAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCACTT-AAATTTGAACTTCAGAACAAAGATCTGTGTCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGGTGTTGATTGTTTTAAAAGATTTTTTT-CTGTTTGGGGTCTTATAATTA-ATTTAGGCTTTCATTTT-CTTGGTTTG--GAAATTATTAATCTAAAATGTAC-TTT-AGAGTGCTTCGGAACT--AAAAAG
s panTro4.chr15              17713852 295 -  99548318 cagtagcaAATTTAGTGGAGCAAATTCCAAAGACATTGAGCCTAGGC-----CAGTTGTCAGTCATGGGTATAATTTTAGATGTTTTCTGGCTCTGAAGCCTTGCATTT-AAATTTGAACTTCAGAACAAAGATCTATGTCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGGTATCGATTGTTTTAAAAGATTTTTTTTCTGTTTGAGGTCTTATAATTA-ATTTAGGCTTTCATTTT-CTTGGTCTG--GAAATTATTAATCTAAAATGTAC-TTT-AGAGTGCTTCAGAACT--AAAAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10052740 296 +  10928107 cagtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCCTAGGC-----CGGTTGTCAGTCATGCGTATAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATTTAAACTTTGGAACAAAAATCTATGTCTCTGCATTGACCAAATGGAATGTATGTGAATTCCATGGTCTTGACTGTTTTAAAATATTTTTTT-CTGTTTGGGGTCTTATAATTA-ATTTAGGCTTTCATTTT-CTTGGTTTG--GAAATTATTAATCTAAAATATAC-TTT-AGAGTGCTGCAGAGCTAAAAAAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102145016 286 + 121039945 cagtagcaAATTTAGTAGAGCACATTCCAA--------AGCCTAGGC-----CAGTTGTCAGTCATGGGTATAATTTTAGATGTTTTCTGGCTCTGAAGCCTTGCATAT-AAATTTGAACTTCAGAACAAAGATCTATGTCTCTGCATTGACCAAATAGAATTTATGTGAATTCCATGGTATCGATTGTTTTAAAAGGTTTTTTT-CTGTTTGGGGTCTTATAATTA-ATTTAGGCTTTCATTTT-CTTGGTTTG--GAAATTATTAATGTAAAATGTAC-TTT-AGAGTGCTTCAGAACT--AAAAAA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21064526 294 -  24206276 cagtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCTTAGGC-----CAGCTGTCAGTCATGGGTGTAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATTTAAACTTCGGAACAAAGATCTATATCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGGTCTTGATTGTTATAAAAGATTTTTTT-CTGTTTGGGGTCTTATAATTA-ATTTAGGCTTTCATTTT-CCTGGTTTG--GAATTTATTAATCTAAAATATAC-TTT-AGAGGGCTTCAGAACT--AAAGAA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 225892 296 -   2853901 tcatagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCTTAGGG-----CAGTTGTCAGTCATGGGTATAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCATTTAAAAATCAGACTTTGGAACAAAGATCTGTGTCTTTGTATTGACCTAATAGCAGGTATGTGAATTCCATGGCTTGATTTTTTTTTTTAGTATTTTTT-CTGTTTTGGATCTTATAATTA-ATATATGCTTTTATTTT-CTGGATCTG--GAAATTTTTAATCTAAAATATACTTTT-AGAATGCTTCAGAACT--AAAGAG
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55178297 274 + 124595110 ---TAACAAGTTTTGT--AGCAACTTTCCAAGGCAT------TAAGA-----TAATTGTCAGTTACCAATAGATCTTTAGGCTTT---------TGAACATTTGAATTT-AAATTCAGGTTTTGAAATAAAGATCCAAAGCTC--CATTGACCAGATAAAATGCATAAGAATTTCATGATCTTTAGC-TTTAAGAAAATTGTTTT-TTGTTTTGAATCTTATAATTATATTCAGACTTTTACCTTATTTTGTTTGAAAAAAAAATCTGTTTAAAATGTAC-TTTGAGAATGGGTCAAAGCA--AAAG--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48253 224 -  40214260 CTATAA-GAATTTGGTAGAACAGATTCTAA-GACCTTGACCTTAGGCCAGTTCAGTTGCCAGCCACTGATACAATTTGAG--GTTTTCAGGCTCTGAAGCTTTG--TTT-AAATTCAGAATTCAGAGTGGAAGTATGTGTCTA--CATTGATCATGTAAAACATATCTGAATTCTACAGTCTTGATT----TTAAAACCTTCTTA-CTGTTTTTGG----------A-GTTTATTTTTTAATTTT-Attt-----------------------------------------------------------
i canFam3.chr30             C 0 C 0
e papAnu2.JH685126              35647   1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=153619.000000
s hg38.chr15_KI270850v1_alt    191162 142 +    430880 GTAGTGTTGTAGGCTTGtttttgtttg---ttttttgagacagggtttcactgtcacccaggctg-gagtgcagtag----cgccggcatggctcactgtaaccttgaactcctgggttcaagcgat-------------cctcctgagt----agctgggactaca
s panTro4.chr15              17714147 142 -  99548318 GTAGTGTTGTAGGCTTGCttttgtttg---ttttttgagacagggtttcactgtcacccaggctg-gagtgcagtag----cgccggcatggctcactgtaaccttgaactcctgggttcaagtgat-------------cctcctgagt----agctgggactaca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10053036 142 +  10928107 GTAGTGTTGTAGGCTTGtttttgtttg---ttttttgagaccgggtttcactgtcacccaggctg-gagtgctgtag----cgtggtcacggctcactgtaaccttgaactcccaggttcaagcgat-------------cctcctgagt----agctgggactaca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102145302 142 + 121039945 GTAGTGTTGGAGGCTTGtttttgttta---tttattgagacagggtttcactgtcacccaggctg-gagttcagtgg----cgccggcatggctcactgtaaccttgaactcctgggttcaagcgat-------------cctcctgagt----agctgggactaca
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21064820 133 -  24206276 GTAGTGTTGTAAGCttgtttttgtttg---ttttttgagacagagtctta-tgtcactcaggatg-gagtgcagtag----catggtca--------tgtaaccttgaactcctgggttcaagcaat-------------cctcctgagt----agctgggactata
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 226188 158 -   2853901 GCAGTGTTGTAGGCTTGtttttgtttgtttttttttgagacagggtctcactgtcacacaggctg-gagtgtagtgg----tgtgataacagctcactgcaacctggaactcttgggctcaagcagtcctcccaacccagcctcccaagt----agcttggactaca
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 48477 133 -  40214260 ------ttttaagattttatttattta---ttcatagagacagag--------------aggcagagggagaagcaggccccatgcagagagcccgatgtggaactcgatcccaggaccccagggatca-----------caccctgagccaaaggcaggcactaaa
i canFam3.chr30             C 0 I 108
e mm10.chr9                  55178571   0 + 124595110 C
e papAnu2.JH685126              35647   1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=12089.000000
s hg38.chr15_KI270850v1_alt    191304 11 +    430880 ggccggtgccc
s panTro4.chr15              17714289 11 -  99548318 ggccggtgccc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10053178 11 +  10928107 ggccaatgccc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102145444 11 + 121039945 ggccgttgccc
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21064953 11 -  24206276 ggccggtgccC
i chlSab2.chr29             C 0 I 4
s calJac3.chrY                 226346 11 -   2853901 ggcatgtgccc
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55178571  0 + 124595110 C
e canFam3.chr30                 48610 108 -  40214260 I
e papAnu2.JH685126              35647  1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=10506.000000
s hg38.chr15_KI270850v1_alt    191315 39 +    430880 cacgtccagctaattttt----------------------ttttat-ttttt--tgtagagttt
s panTro4.chr15              17714300 63 -  99548318 cacgtccagctaatttttattttattttattttattttatttttat-tttttattttagcgttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10053189 39 +  10928107 cacatccagctagttttt----------------------taaatt-ttttt--tgtagagttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102145455 40 + 121039945 catgtccagctaattttt----------------------ttttttattttt--tgtacagttt
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 226357 36 -   2853901 catgtccag---attaaa----------------------aaaaat-tgttt--tgtagggatt
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55178571  0 + 124595110 C
e canFam3.chr30                 48610 108 -  40214260 I
e chlSab2.chr29              21064964  4 -  24206276 I
e papAnu2.JH685126              35647  1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=5550.000000
s hg38.chr15_KI270850v1_alt    191354 5 +    430880 gagtc
s panTro4.chr15              17714363 5 -  99548318 gagtc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10053228 5 +  10928107 gagtc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102145495 5 + 121039945 gagtc
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 226393 5 -   2853901 ggttc
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55178571 5 + 124595110 GAGTC
i mm10.chr9                 C 0 C 0
e canFam3.chr30                 48610 108 -  40214260 I
e chlSab2.chr29              21064964 4 -  24206276 I
e papAnu2.JH685126              35647 1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=79874.000000
s hg38.chr15_KI270850v1_alt    191359  99 +    430880 tcactctgttgcccaggctggtct--tgaactcctggcctcaagtgatccaccacctcggcctcccaaagtgctgggattacaggtgtgtgccactgtgcc
s panTro4.chr15              17714368  99 -  99548318 tcactctgttgcccaggctggtct--tgaactcctgacctcaagtgatccaccacctcagcctcccaaagtgctgggattacaggtgtgtgccactgtgcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10053233  99 +  10928107 tcgctctcttgcccaggctggtct--tgaactcctggcctcaagtgatctactacctcagcctcccaaagtgctaggattacaggtgtgtgccactgtgcc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102145500  99 + 121039945 ttactctgttgcccaggctggtct--tgaactcctggcctcaagtgatccaccacctcggcctcccaaagtgctgggattacaggtgtgtgtcactgtgcc
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 226398 101 -   2853901 ttgctctgttgtccaggctgatcttgtgaactcctgacctcaagcgatccactacctcagcctcccaaagtgctgggattagaggcctgtattatcatgtc
i calJac3.chrY              C 0 C 0
e mm10.chr9                  55178576   0 + 124595110 C
e canFam3.chr30                 48610 108 -  40214260 I
e chlSab2.chr29              21064964   4 -  24206276 I
e papAnu2.JH685126              35647   1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=8390.000000
s hg38.chr15_KI270850v1_alt    191458 9 +    430880 tggcTGTAG
s panTro4.chr15              17714467 9 -  99548318 tggcTGTAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10053332 9 +  10928107 tggctGTAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102145599 9 + 121039945 tggcTGTAG
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 226499 9 -   2853901 tggcTGTAG
i calJac3.chrY              C 0 C 0
s canFam3.chr30                 48718 8 -  40214260 TAGTTGTG-
i canFam3.chr30             I 108 C 0
e mm10.chr9                  55178576 0 + 124595110 C
e chlSab2.chr29              21064964 4 -  24206276 I
e papAnu2.JH685126              35647 1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=364508.000000
s hg38.chr15_KI270850v1_alt    191467 359 +    430880 GCTTGTTTTATGAGTCTGGGAGTAAAATACTTCTTAAAATTGTCCAATTAGGATGA--------------GAGTCTG-TTTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAAACTGCATGAAAACATTAAACCTTTTCCATGGGTC------------AGGCAGCCATTGTACT-AAAGTTCATGAACCCTTTCATTTTCCCTTGACAAGATA--ATAAACAAGGGACCGCAACTTTGAGGGAAATCTAGAAAGGT-AGGAGACTGGACTTTGGAGTTGTCAGATTAGGACAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAATGTGG-GAACAGGCCCAGAGCAAC-TTTGGACATGGTGTGTTTGGGTGCATTGGA--TGCTTTT
s panTro4.chr15              17714476 358 -  99548318 GCTTATTTTATGAGTCTGGGAGTAAAATACTTCTTAAAATTGTCCAATTAGAATGA--------------AAGTCTG-TTTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAAACTGCATGAAAACATTAAACCTTTTCCATAGGTC------------AGGCAGCCATTGTACT-AAAGTTCATGAACCCTTTCATTTTCCCTTCACAAGATA--AAAAACAAGGGACCGCAACTCTGAGGGAAATCTAGAAAGGT-AGGAGACTGGACTTTGGAGTTGTCAGATTAAGACAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAATGTGG--AACAGGCCCAGAGCAAC-TTTGGACATGGTGTGTTTGGGTGCACTGGA--TGCTTTT
i panTro4.chr15             C 0 I 5
s ponAbe2.chr15_random       10053341 360 +  10928107 GCTTGTTTTATGAGTCTGGGAGTAAAATACTTCTTAAAATTGTCCAATTAGAATGA--------------GAGTTTG-TTTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAAGCTGCATAAAAACATAAAATCTTTTCCGTGGGTC------------AGGCAGCCATTGTACT-AAAGTTCATGAACCCTTTCATTTTCCCTTCACAAGATA--AAAAACAAGGGACCAAAACTTTGAGGGAAATCTAGAAAGGTAAGGAGACTGGACTTTGGAGTTGTCAGATTAGGACAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAACGTGG-GAACCGGCCCATAGCAAC-TTTGGACATGGTGTGTTTGGGTGCATTGGA--TGCTTTT
i ponAbe2.chr15_random      C 0 I 5
s nomLeu3.chr6              102145608 359 + 121039945 GCTTGTTTTATGAGTCTGGGCGTAAAATACTTTTTAAAATTGTCCAATTAGGATGA--------------GAGTCTG-TTTTAATGTTTTTATGCAGTTTAGCTTGGGTGGAATAAACTGCATGAAGACATTAAACCTTTTCTGTGGGTC------------AGGCAGCCATTGTAGT-AAAGTTCATGAACCCTTTCATTTTCCCTTCACAAGATA--AAAAACAAGGGACCGCAAGTTTGAGGGAAATCTAGAAAGGT-AGGAGACTGGACTTTGGAGTTGTCAGATTAGGACAGGTGAGAAGCAGATATTCTAGGCTCCTGAAATAATGTGG-GAACAGGCCCAGAGCAAC-TTTGGATATGGTGTGTTTGGGTGCATTGGA--TGCTTTT
i nomLeu3.chr6              C 0 I 5
s calJac3.chrY                 226508 360 -   2853901 GATTGTTTTATGAGTATGGGAGTAAAATGATCTTTAATATTGTCCAGTTAG--------------------AGTTTG-TTTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAAACTGCATGAAAACATTAAACCTTTCCCATGGGTCCAGTATACCCTGAAGCAGCCATTGTACT-AAAGTTCATGAACCTTTTCTTTTCCCC--CACAAGAT-----ATACAAGGCACCATGACATTGAGGGAAATCTAGAAAGGT-AGGAGATGGAACTTTGGAGATCTAAGATTAGGACACGTGAAAAGCAGAGATTTTAGGCTCCTGAAATAACATGG-GAACAGGCCCAGAACAAC-CTTGGACATGGTGTGTTTGGATGCATTgga--tgctttt
i calJac3.chrY              C 0 N 0
s mm10.chr9                  55178576 308 + 124595110 ATTTGTTTTGT--GTCCAGGAGTAGAATAACTCTTAAAATTCTTTAATCGGAGCGACTTCGGTGGATGGGCTGTATG-CTTTACGGTTTTCATGAAGTTTAATTTAGGAGGAACAAATTGCATGAGAAGATTAAGCTTCCCCAGCCTGGC-----TGCAGTGAAACAGACTTTGTGTT-CAGTTTCTCTG--CTTTTCTTTTACTTCTCATGAGAT-----TGACAAGGGGC----------AGTGATACTTAGGGAAGT-AACACAGAAGACTCTGCAATTTT---ACTAGAAC--------------------------------TAGCGTGGCTGACCGGCC------------TGAGTGTAGTGTGCTT--------CAGG--CACTT--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48726 365 -  40214260 GTTTGTTCTGTGAGTCTGGGCACAAAATAATTCTTAACATTGTCCAACTTGTATGGCTTTTTTGGGATA-GAGCTTGTTTTTAACATTTACGTGCAGTGTAACTTAGGTAGGATAAACTGCAGGAAAACGTTAAACCTTTCCCGTGGGTTTGGTATGCAATGAGGTTGACATTCTACTCAGAGTTTACGT-TCTTCTCATTTTCCCTTCACAAGATAATATAAAGAAGGGATAGCAAGATTTAGGGAAATCTAGAAAGAT-AAGAACCTGGACCTTGGAGATGTCAGATCAAGACAGATGAAAAGAGGAT--------------------------AAAAAGGCACAGAGCAACTTTTGGGCACGGTGTGTTTAGGTGCATTAGAGCTGTCTTT
i canFam3.chr30             C 0 I 3
e chlSab2.chr29              21064964   4 -  24206276 I
e papAnu2.JH685126              35647   1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=329746.000000
s hg38.chr15_KI270850v1_alt    191826 500 +    430880 GAGAAGGAAGGTTGATGTGTTGAAGTCATGGAAAGCAAGATTGTCCAGAAAAGACAGATGGACAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTATGTTTGTTGATAAGAAGGCCTTAAGCAGGGAATGGTGTGCTGAGAATATTGTTTTAGAAAGATATGTTGAATTCTGTTTGGGATGTGCTGATTAATACTTAGGTGGAGAAGTTTTGTGGATGGGAACATGAC-TGAGGTTGAAGGTACAGG---TGGAAATACAGGCCAA--AGGCATTTGTGAGCATTGTGGG-AAAACAAGTGTGGG-TGGAAGATCAG-------------------------------GGCTGAAA----GGTGCACACAGGGAGAAGGGAGCTCCATGAAGTACA------TGGGCAGAGTTTG-A------------------------------------------------------------GTGAAGGTAGTCAGTAATCTGGTCT--AGAAAT----------TGGTGAATT-AAGCGGCTTGGGAAAAAAG----TCGAGATA---AATATAAA--CTACCCCTTTAGAGATTTTGGCAATTGAAGT----AGAAATA-TAAGGTAATTGAA
s panTro4.chr15              17714839 508 -  99548318 GAGAAGGAAGGTTGATGTGTTGAAGTCATGGAAAGCAAGATTGTCCAGAAAAGACAGATGGACAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTATGTTTGTTGATAAGAAGGCCTTAAGCAGGGAATCATGTGCTGAGAATATTGTTTTAGAAAGATATGTTGAATTCTGTTTCGGATGTGCTGATTAATACTTAGGTGGAGAAGTTTTGTGGATGGGAACATGAC-TGAGGTTGAAGGTACAGG---TGGAAATACAGGCCAA--AGGCATTTGTGAGCATTGTGGGGAAAACAAATGTGGG-TAGAAGATCAG-------------------------------GGCTGAAA----GGTGCACACAGGGAGAAGGGAGCTCCATGAAGTACAGACTCATAGGCAGAGTTTG-A------------------------------------------------------------GTGAAGGTAGTCAGTAGTCTGGTCT--AGAAAT----------CGGTGAATT-AGCTGGCTTGGGAAAAAAA---ATCGAGATA---AATATAAA--CTACCCCTTTAGAGATTTTGGCAATTGAAGT----AGAAATA-TAAGGTAATTGAA
i panTro4.chr15             I 5 C 0
s ponAbe2.chr15_random       10053706 510 +  10928107 GAGAAGGAAGGTTGATGTGTTGAAGTCATGGAAAGCAAGATTGTCCAGAAAAGGCAGATGGATAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTGTGTTTGTTGATAAGAAGGCCTTAAGCAGGGAATTGTGTGCTGAGAATATTGTTTTAGAAAGATATGTTGAATTCTGTTTGGGATGTGCTGATTAATACTTAGGTGGAGAAGTTTTGCAGATGGGAACATGAC-TGAGGTTGAAGGTACAGG---AGGAAATACAGGCCAA--AGGCATTTGTGAGTATTGTGGGGAAAACAAGTGTAGGTTGGAAGATCAG-------------------------------GGCTGAAA----GGTGCACACAGGGAAAAGGGAGCTCTATGAAGTACAGAGTCATGGGCAGAGTTTG-A------------------------------------------------------------GTGAAGGTAGTCAGTAATCTGGTCT--AGAAAT----------CGGTGAATT-AGCCGGCTTGGGAAAAAAAAAAATCGAGATA---A--ATAAA--CTACCCCTTTAGAGATTTTGGCAGCTGAAGT----AGAAAAA-TAAGGTAATTGAA
i ponAbe2.chr15_random      I 5 C 0
s nomLeu3.chr6              102145972 509 + 121039945 GAGAAGGAAGGTTGATATGTTGATGTCATGGAAAGCAAGATTGTCCAGAAAAGGCAGATGGATAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTGTGTTTGTTGATAAGAAGGCCTTAAGCAGGGAATCGTGTGCTGAGAATATTGTTTTAGAAAGATATGTTGAATTCTGTTTGGGATGGGCTGATTAATACTTAGGTGGAGAAGTTTTGTGGATGGGAACATGAC-TGAGGTTGAAGGTACAGG---TGGAAATACAGGCCAA--AGGCATTTGTGAGCATTGTGGGGAAAACAAGTGTGGG-TGGAAGATCAG-------------------------------GGCTGAAA----GGTGCACACGGGGAGAAGGGAGCTCCATGAAGTACAGACTCATGGGCAGAGTTTG-A------------------------------------------------------------GTGAAGGTAGTCAGTAACCTGGTCT--AGAAAT----------CGGTGAATT-AGCCGGCTTGGGAAAAAAA--AATCGAGATA---AATATAAA--CTACCCCGTTAGAGATTTTGGCAATTGAAGT----AGAAATA-TAAGGTAATTGAA
i nomLeu3.chr6              I 5 C 0
s mm10.chr9                  55178884 463 + 124595110 ----------------------AAGCAGAGGAGAGGAGGCT--CCTAGAATACACTGGAAGGGAAAAGCA--GAGTTAGAGACA-ACATGCT--TGTTGGATAAGGTTGTTGGTCATA------TAAGCAGAAAATGGTTTGCTGTGGATATTGTTTTCGGAAGATGAGGTACATTC-----AGGATTTGCTGACTAAAGTGCAGGTAAAG----TGTGTGGATGG--AGATGACTTGAGGTTGG------AGG---AGGAGATACAGGTTAAGGAGACGTTATTGAA-ATTCTGAAGAAAACAAATACAGGACAGGAGAGAAGTCTTCATAACATGAAGCCCTGTGTAGAATCTGGCTAAGAACACAGTGTAATTTGTGAAAGGAGACCTGC----------------TGAGTTGGTTTTGTA------------------------------------------------------------TTGAAGGTAGTCATTGTCCT--------------------------TCAATT----CAGATTGCATGGAAAG----TGGAGGTA------GTGGG--TAACTCCTTCAGAGATCTTGCTAATTGAAACTTAAAGCAGTACTAAGATACTTGGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49094 563 -  40214260 GAAGAACAAGATTGATA-------------AAAAGCAAGGTTTCCTAGAAAAG-CAGATGGCTAAAAGTCTTGAATTAGAGACA--AATGTTTTTATTTGTTGTGATTGTTGACAAAAAGGCCTTAAGCAAAGGCCAATGGGCTGAGAA---TGTTTTATAGAGATAATCTGCA--CAGAACAGAATTCA-TCATTAATGCTCAAGTGGAGA---TTTAGGAGTAGGAATGTGGC-TGAGTTTGAAGATATAGGAGTAGGAGATTTAGACTAA--GGGCATTTGTGAGAAC--TGAAGAAAATAAGTGTGGGATAGAACATTGG-------------------------------GGCTAAAG----GGTACAAATCAGGGGA-GGGAGCTCCGTGAAACACAGAGTCATGGACAGGGTCTG-AATACGAAAAAATTGTAGTAGGGGTGGAAGAGATGAGGGAGTCTAAGACCATTGGGTCTGGATGGAAGTGGTTTTTAAACTGGTCTACAGAGATCTATAGATCACAGCGAATTTAGTTTCCTTAAAAAAAAAAAAAAAGGAGATAGTAAGTATGGACTCTATTCCTTTAGAGATTTTGATGGCTGAAGT------AAAGA-GAAGATAATAGAA
i canFam3.chr30             I 3 C 0
e chlSab2.chr29              21064964   4 -  24206276 I
e papAnu2.JH685126              35647   1 +    130206 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=8286.000000
s hg38.chr15_KI270850v1_alt    192326 5 +    430880 AAAAG
s panTro4.chr15              17715347 5 -  99548318 AAAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10054216 5 +  10928107 AAAAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102146481 5 + 121039945 AAAAG
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35648 5 +    130206 AAAAG
i papAnu2.JH685126          I 1 C 0
s mm10.chr9                  55179347 4 + 124595110 -AAAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49657 5 -  40214260 AAAGG
i canFam3.chr30             C 0 I 159
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=12341.000000
s hg38.chr15_KI270850v1_alt    192331 16 +    430880 TTAGGATTTAAACAAT
s panTro4.chr15              17715352 16 -  99548318 TTAGGATTTAAACAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10054221 16 +  10928107 TTAGGATTTAAACAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102146486 16 + 121039945 TTAGGATTTAAACAAT
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35653 16 +    130206 TTAGGATATAAACAAT
i papAnu2.JH685126          C 0 C 0
s mm10.chr9                  55179351 16 + 124595110 CCAGTACCAGATAGCT
i mm10.chr9                 C 0 C 0
e canFam3.chr30                 49662 159 -  40214260 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=101987.000000
s hg38.chr15_KI270850v1_alt    192347 105 +    430880 TCTGCATATATTTGCGTATGTG-TAAG-----------------------------AACAGATAGTATGGGAAGGGAGGG-AGCAGAATGATGTGAATAAAGATGTTGTTCTGCAGGGTATTATTCAAATTCTTTT
s panTro4.chr15              17715368 105 -  99548318 TCTGCATATGTTTGTATATATG-TAAG-----------------------------AACAGATAGTATGGGAAGGGAGGG-AGCAGAATGATGTGAATAAAGATGTTATTCTGTGGGGTATTATTCACATTCTTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10054237 105 +  10928107 TCTGCATATATTTGTATATGTG-TAAG-----------------------------AACAGATAGTATGGGAAGGGAGGG-AGCAGAATGATGTGAATAAAGATGTTGTTCTGCGGGGTATTATTCAAATTCTTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102146502 106 + 121039945 TCTGCATATATTTGTATATGTGTTAAG-----------------------------AACAGATAGTGTGGGAAGGGAGGG-AGCAGAATGATGTGAATAAAGATGTTGTTCTGCGGGGTATTATTCAAATTCTTTT
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35669 105 +    130206 Tctgcatatatttgtatatatg-taag-----------------------------aACAGATAGTATGGGAAAGGAGGG-AGCAGAATTATGTGAATAAAGATTTTGTTCTGCGGGGTGTtattcaaattctttt
i papAnu2.JH685126          C 0 C 0
s mm10.chr9                  55179367  92 + 124595110 TGGGCATAGATTTGTGTGTGTG-TAAG-----------------------------AACAAATGATACAGGAAAG---------AGAATGGTCTGCA-AAAGA---TGGTCTGCA-GGTGTTTTTCAAATTCTTTT
i mm10.chr9                 C 0 I 350
s canFam3.chr30                 49821 125 -  40214260 tctgtgtgtgtgtgtgtgtgtg-tgtgtgtgtgtgtgtgtgtgtgtctcatgaataaataaataaaatcttaaaaaaaaGTAATAGAA----------AAAGGTTAGAATTTTAAAAGTTCTGCATAGATTTCTTT
i canFam3.chr30             I 159 C 0
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=2161.000000
s hg38.chr15_KI270850v1_alt    192452 7 +    430880 GAAATTA
s panTro4.chr15              17715473 7 -  99548318 GAAATTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10054342 4 +  10928107 TAA---A
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102146608 7 + 121039945 GAAATTA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35774 7 +    130206 aaaagta
i papAnu2.JH685126          C 0 C 0
s canFam3.chr30                 49946 7 -  40214260 AAGAGTA
i canFam3.chr30             C 0 I 65
e mm10.chr9                  55179459 350 + 124595110 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=108252.000000
s hg38.chr15_KI270850v1_alt    192459 127 +    430880 TTATTAGTAtttgagatagggtcactatcacccagggtggagtgcagtggcatgatcatagcttactgcagcctcgaactcctgggaccaaacagtgcttctatttcagcctcctgagcacctgACA
s panTro4.chr15              17715480 127 -  99548318 TTATTAGtttttgagatagggtcgctgtcacccagggtggagtgcagtggcatgatcatagcttactgcagcctcaaactcccgggcccaaacaatgcttctatttcagcctcctgagcacctgACA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10054346 127 +  10928107 TTATTAGtttttgagataggatcactgtcacccaggctggagtgcagtggcatgatcatagcttactgcagcctcaaactcctgggcccaaacaatgcttctatttcagcctcctgagcacctgaga
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102146615 127 + 121039945 TCATTAGGttttgagatagggtcactgtcacccagggtggagtgcagtggcatgatcatagcttactgcagcctcaaactcctgggcccaaacaatgcttctgtttcagcctcctgagcacttgaga
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35781 127 +    130206 ttcttagtttttgagatagggtcgctgtcacccaggctggagtgcagtggcgtgatcatagcttactgcagcctcaaactcctgggcccaaacggTCCTtctatttcagcctcctgagcacctgaga
i papAnu2.JH685126          C 0 C 0
e mm10.chr9                  55179459 350 + 124595110 I
e canFam3.chr30                 49953  65 -  40214260 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=238427.000000
s hg38.chr15_KI270850v1_alt    192586 235 +    430880 TCAAATTCTTTTTCTAACTTATTTTTAAGTTATTAACATCAATAGGTGCTTACTACATAAAACCATAAACTTGGAAATCAGGGGAAAGCACCAAATGTCTCCAGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATGTAAGTTGTTCTGGTCT------TTTTCTGTGCTTATTTCAGCATAATTGAAATTCTCTCTATTCCTTTGTGTAATCCATTTTTCATTTCAAAGTTTTT
s panTro4.chr15              17715607 235 -  99548318 TCAAATTCTTTTTCTAACTTATTTTTAAGTTATTAGCATCAATAGGTGCTTACTACATAAAACCATAAACTTGGAAATTAGGGGAAAGCACCAAATGTCTCCAGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATGTAAGTTGTTCTGGTCT------TTTTCTGTGCTTATTTCAGCATAATTGAAATTCTTTCTATTCCTTTGTGTAATCCATTTTTCATTTCAAAGTTTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10054473 235 +  10928107 TCGAATTCTTTTTCTAACTTATTTTTAAGTTATTAACATCAATAGATGCTTACTACATAAAACCATAAACTTGGAAATTGGGGGAAAGCACCAAATGTCTCCAGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATATAAGTTCTTCTGGTCT------TTTTCTGTGCTTATTTCAGCATTACTGAAATTCTTTCTATTCCTTTGTGTAATCCATTTTTCATTTCAAAGTTTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102146742 235 + 121039945 TCAAATTCTTTTTCTAACTTATTTTTAAATTATTAACATCAATAGGTGCTTACTACATAAAACCATACACTTGGAAATTAGGGGAAAGTACCAAATGTCTCCAGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATATAAGTTCTTCTGGTCT------TTTTCTGTGCTTATTTCAGCATAATTGAAATTCTTTCCATTCCTTTGTGTAATCCATTTTTCATTTCAAAGTTTTT
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              35908 234 +    130206 tcaaatgctttttttaacttacttttaAGTCGTTAACATCAATAGATGCTTCCTGCATAAAACCATAAACCTGAAAATTAGGGG-AAGCACCAAATCTCTCCAGAGataataactaaaattaattgaaattaacaTTTCAATATGAGTTCTTCTGGtct------ttttctgtgcttatttcAGCATAATTGAAATTCTTTCTATTCCTTTGTgtattccatttttcatttcaaagtttTT
i papAnu2.JH685126          C 0 C 0
s canFam3.chr30                 50018 215 -  40214260 TCAAATTCCTCTTCTGACTTTTCTCCTAATTATAAGAATCAGTAGGTGCTCAGTATAGAAA-------ACTGAGAAAAGAAGGAAGAGCACTAAATGTCTCTAG------------CATTTAATTG---TTATTATTTCACTATATGTCCTTCTAGTCTCTTTTCTTTTCTGTGCTTATTTTAGTGTGATTGAGATTAT----ATTCAGTTTTGTATTTTGTTTTTCATTGCATTATTTTT
i canFam3.chr30             I 65 I 1022
e mm10.chr9                  55179459 350 + 124595110 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=2948.000000
s hg38.chr15_KI270850v1_alt    192821 5 +    430880 CGATA
s panTro4.chr15              17715842 5 -  99548318 CGATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10054708 5 +  10928107 AGATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102146977 5 + 121039945 TGATA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              36142 5 +    130206 CAATA
i papAnu2.JH685126          C 0 C 0
e mm10.chr9                  55179459 350 + 124595110 I
e canFam3.chr30                 50233 1022 -  40214260 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859 0 - 170124641 C

a score=371760.000000
s hg38.chr15_KI270850v1_alt    192826 429 +    430880 CAGGAGAAATTATGCCGTGTTGATAtttcagtggctgcttaatagttcatggaattgagttaactgttttgctatttttgcacatgcagattttgtgtttgtttttgtggttgcaaggttgaaataggtattcttatgcctaaatttgtgtttacctcttagactagtttcttgtaatacaattctagaagtcgagtttctggaacaaactatgaacagttaaggttcttgacacctgctgctaaactgTTTCAAAGGTTCCTCTTA---GGAGATTTAAAAGATGGCTTggccaggc-gtggtgtctcacgctggtaatcccagcactttgggaggctgaggtgggcagatcacttgacgtcataagtttgagaccagcctggccaacatgttgaaaccctgtctctactaaaaatacaaagaaattagctg
s panTro4.chr15              17715847 432 -  99548318 CAGGAGAAATTATGCCGTGTTGATAtttcagtggcttcttaatagttcatggaattgagttaactgttttgctatttttgcacatgcagattttgtgtttgtttttgtggttgcaaggttgaaataggtatccttatgcctaaatttgtgtttacatcttagactagtttcttgtaatacagttctagaggtcgagtgtctggaacaaactatgaacacttaaggttcttgacacctgctgctaaactgtttcaaaggttCCTCTTAAGAGGAGATTTAAAAGATGGCTTggctgggc-gtggtgtctgatgccagtaatcccagcactttgggaggctgaggtgggcagatcacttgacgtcataagtttgagaccagcctggccaacatgttgaaaccctgtctctattaaacatacaaagaaattagctg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10054713 429 +  10928107 CAGGAGAAATTATGCTGTGTTGGTATTTCAGTGGCCTCTTAATAGTTCAGGGaattcagttaactgttttgctatttttgcacatgcagattttgtgtttgtttttgtggttgcaaggttgaaataggtatccttatgcctaaatttgtgtttacatcttagactagtttcttgtcatacaattctagaagttgaatttctggaacaaactatgaacagttaaggttcttgacacctgctgctaaactgTTTCAAAGGTTCCTCTTA---AGAGATTTAAAAGATGGCTTggccgggc-atggtgtctcactccagtaatcccagcactttgggaggctgaggtgggcagatcacttgatatcagaagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaagaaattagctg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102146982 427 + 121039945 CAGGAGAAATTATGCTGTGTTGGTATTTCAGTGGCTTCCTAATAGTTCATGG-----AGTTAACTGTCTCGCTGTTTTTGCACGTGCAGATTTTGTGTTTGTTTTTGTGGTTGCaaggttgaaataggtatccttatgcctaaatttgtgtttacatcttagactagtttcttgtaatacagttctagaagtcgagtttctggaacaaactatgaacagttaaggttcttgacacctgctgctaagctgtttcaaaggttCCTCTTAAGAGGAGATTTAAAAGATGGCTTggccgggc-gtggtttctcacgctggtaatcccagcactttgggaggctgaggtgggcagatcacttgacgtcagaagtttgagaccagcctggccaacatgttgaaatcctgtctctactaaaaatacaaagaaattagctg
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              36147 430 +    130206 CAGGAGAAATTATGCTGTATTGGTATTTCAGTGGTCTCTTAATATTTCATGGACTTGAGTTAACtgttttgctatttttgcacatgcagattttgtgtttgtttttgtggttgcAAGGTTGGAATAGGTATCCTCATGCCTAAATCTGTGCTTACATCTTAGACTAGTTTCTTCTAATGCAATTCTAGAA-TCGAGTTTCTGGAACAAACTATGAACAGTTCAGGTTCTCCACACCTGCTGCCAAACTGTTTCAAAGGTTCCTCTTAAGAGGAGATTTAAAAGATGGctt-gccgggc-gtggtgtctcatgctggtaatcgcagcactttgggaggctgaggtgggcagatcacttgatgtcagaagtttgagaccatcctggccaacatggtgaaaccctgtctctcctcaaaatacaaagaaattagctg
i papAnu2.JH685126          C 0 C 0
s mm10.chr9                  55179809 289 + 124595110 caaaaaaaa--aaGGTGATTTAGTATCCTAATGACCCCATAATGGATGATCC-TTTGAATTAATTG-------GTTTTTGTATCTGTAGATTT--------TTTTTGTACTTATCAGAACGAGATGGGTATAATTATGCCTAAATTATTGTTCATA-----------TTTCTTAGAATAAAACTCTa--------------------------------------------------------------------------------------------------------gctgggcagtggtggtgcacgcctttaatcccagcac-ttgggaggcagaggtaaacgaatttct---------gagttagaggccagcctggtctacagagtgagttccagga-cagccagggctacacagagaaaccctg
i mm10.chr9                 I 350 I 128
e canFam3.chr30                 50233 1022 -  40214260 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=98629.000000
s hg38.chr15_KI270850v1_alt    193255 120 +    430880 ggcgtggtggtgtacgtctgtaatcccagctactcaggaga----------ctgaggcatgagaatcacttgaacctgggaggcagaggttgcagtgagcagagatcgcgccactctactcctgcctgag
s panTro4.chr15              17716279 120 -  99548318 ggtgtggcagtgtacgtctgtaatcccagctactcaggaga----------ctgaggcatgagaatcacttgaacctgggaggcagaggttgcagtgagcggagattgccccactatactcctgcctaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10055142 130 +  10928107 ggcatggtggtgtacgactggaatcccagctactcaggagacttaagtctcctgaggcataagaatcacttaagcctgggaggcagaggttgcagtgagcagagattgccccactatactcctgcctgag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102147409 120 + 121039945 ggcgtggtggtgtacgtctgtaatcccagctactcaggaga----------ctgaggcgtgagaatcacttgaacctgggaggcagaggttgcagtgagcagagattgccctactatactcctgcctgag
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              36577 120 +    130206 ggggtggtggtgtacatctgtaatcccagctacccaggaga----------ctgaggcatgagaatcacttgaacctgggaggcagaggttacagtgagcagagattaccccactgtactcccgcctgag
i papAnu2.JH685126          C 0 C 0
e mm10.chr9                  55180098 128 + 124595110 I
e canFam3.chr30                 50233 1022 -  40214260 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=53340.000000
s hg38.chr15_KI270850v1_alt    193375 59 +    430880 tgacagagtgagactctatcttacaaaaat-------aaaataaaataaat-aaagaaGTAAATAAA
s panTro4.chr15              17716399 60 -  99548318 tgacagagtgagactctatcgtacaaaaaa-------aaaataaaataaaTTAAAGAAGTAAATAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10055272 59 +  10928107 tgacaaactgagactctatcttaaaaaaat-------aaaacaaaTTAAAT-AAAGAAGTAAATAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102147529 60 + 121039945 tgacagagtgagactctatcttacaaaaat-------aaaataaaataaaataaagaaGTAAATAAA
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              36697 66 +    130206 tgacagagtgagactctatcttcaaaaaaaagaaaagaagataagtTAAAT-AAAGAAGTATATAAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21064968 55 -  24206276 TGACAGAGTGAGACTCTATATTTAAACAaa----------ataaattaaat-aaa-aagtaaataaa
i chlSab2.chr29             I 4 C 0
e mm10.chr9                  55180098 128 + 124595110 I
e canFam3.chr30                 50233 1022 -  40214260 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=15018.000000
s hg38.chr15_KI270850v1_alt    193434 11 +    430880 TAAATGATGGC
s panTro4.chr15              17716459 11 -  99548318 TAAATGATGGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10055331 11 +  10928107 TAAATGATGGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102147589 11 + 121039945 TAAATGATGGC
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              36763 11 +    130206 TTAATGATGGT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065023 11 -  24206276 taaatGATGTC
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55180226 11 + 124595110 TTAAAGGTGGC
i mm10.chr9                 I 128 C 0
e canFam3.chr30                 50233 1022 -  40214260 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859  0 - 170124641 C

a score=227621.000000
s hg38.chr15_KI270850v1_alt    193445 139 +    430880 TTATTTCATAATAGTTGTGACTTTGTAAAGCTTTTAAATCTGCTTTCCCCAGAGTCTAGCTTTTAAATAAAATACAGGATATAAAAGGTGGGAGCCTCTTGAATGGAATGT-GGGGGCTTTTTCTTTC-------TCCCCATAGGAT
s panTro4.chr15              17716470 139 -  99548318 TTATTTCATAATAGTTGTGACTTTGTAAAGCTTTTAAATCTGCTTTCCCCAGAGTCTAGCTTTTAAATAAAATACAGGATATAAAAGGTGGGAGCCTCTTGAATGCAATGT-GGGGGCTTTTTCTCTC-------TCCCCATAGGAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10055342 139 +  10928107 TTATTTCATAATAGTTGTGACTTTGTAAAACTTTTAAATCTGCTTTACCCAGAGTCTAGCTTTTAAATAAAATACAGGATATAAAAGGTGGGAGCCTCTTGAATGGAATGT-GGGGGCTTTTTCTCTC-------TCCCCATAGGAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102147600 140 + 121039945 TTATTTCATAATAGTTGTGACTTTGTAAACCTTTTAAATCTGCTTTCCCCAGAGTCTAACTTTTAAATAAAATACAGGATATAAAAGGTGGGAGCCTCTTGAATGGAATGTGGGGGGCTTTTTCTCTC-------TCCCCATAGGAT
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              36774 138 +    130206 TTATTTCATACTAGTTGTGACTTTGTAAAGCTTTTAAATCTGGTTTACCCAAAGTCtagcttttaaagaaaatacaggatATAAAAGGTGGGAGCCTCTTGAATGGAATGT--Ggggctttttctctc-------tccccataaGAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065034 139 -  24206276 TTATTTCATAATAGTTGTGACTTTGTAAAGCTTTTAAATCTGCTTTACCCAGGGTCTAACTTTTAAATAAAATACAGGATGTAAAAGGTGGGAGCCTCTTGAATGGAATGT-AAGGGCTTTATCTCTC-------TCCCCATAGGAT
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55180237 127 + 124595110 AGATTTGATAATAGTCACAACTTAATGAGGCTGTGGGATCTGCTTTCCACAG------------------AACATAAGGTATTAAAGGAGAAAACCTTGTGAGTGGAGTCT--GGGGCTTTCCTCCTCCTCCTCTTCCTCCTAGAAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51255 131 -  40214260 tttttttttGGTAATTATAGCTTAACAAATCTATTAAATATGCTTTACTCAGATTCTAGCTCTTAAACAAAATGTGAGGTACAGAAGGAGGGAAGC---TGAACTGAATGT-GAATGCTTTTTTCTCT-------TCCCCAT-----
i canFam3.chr30             I 1022 C 0
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac3.chr7              106607859   0 - 170124641 C

a score=1085787.000000
s hg38.chr15_KI270850v1_alt    193584 377 +    430880 AGATATATTCTGTTT--CCTGTCCCCCACCAAGTCAAGAATAATTTAAGTTTTGGC----ATAAGAAACTGCTGAAGGAAAATGGGTTGAATCGGCTAATATTTTTCTTCTTTTTGCAGGATATAGAAGACTTAGATCACTATGAGATGA---AAGAAGAGCCTATTAGTGAGAAGAAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGCA--AGGCCATTTAAATGTGTAAGTGTGTATAAATATC-------TGGACTTTTTGG-TTAAGTAATTATAGTTAAT------------ACCAGGCAATTCATGAACATGCCGATGTCAGCTGCTCTCCTCCTCCATTCCTGCCTTAGTGGCGGATTCAGTCA
s panTro4.chr15              17716609 377 -  99548318 AGATATATTCTGTTT--CCTGTCCCCCACCGAGTCAAGAATAATTTAAGTTTTGGC----ATAAGAAACTGCTGAAGGAAAGTGGGTTGAATCGGCTAATATTTTTCTTCTTTTTGCAGGATATAGAAGACTTAGGTCACTATGAGATGA---AAGAAGAGCCTACTAGTGAGAAGAAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGCA--AGGCCATTTAAATGTGTAAGTGTGTATAAATATC-------TGTACTTTTTGG-TGAAGTAATTGTAGTTAAT------------ACCAGGCAATTCATGAACATGCTGATCTCAGCTGCTCTCCTCCTCCATTCCTGCCTTAGTGGTGGATTCGGTCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10055481 367 +  10928107 AGATATATTCTGTTT--CCTGTCCCTCACTGAGTGAAGAATAATTTAAGTTTTGGC----ATAAGAAACTGCTGAAGAAAAAT-AGTTGAATAAGCTAATATTTTTCTTCTTTTTGCAGGATATAGAAGACTTAGATCACTATGAGATGA---AAGAAGAGCCTATTAGTGAGAAGAAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGA---------GAAGACTGAAAGGCA--AGGCCATTTAAATGTGTAAGTGTGTATAAATATC-------TGGACTTTTTGG-TTTAGTAATTATAGTTAAT------------ACCAGGCAATTCATGAACATGCCAATCTCAGCTGCTCTCCTCCTCCATTCCTGCCTTAGTGGTGGATTCAGTCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102147740 377 + 121039945 AGATATATTCTGTTT--CCTGTCCCCCACTGAGTCAAGAATAATTTAAGTTTTGGC----ATAAGAAACCGCTGAAGGAAAGTGGGTTGAATCAGCTAATATTGTTCTTCTTTTTGCAGGATATAGAAGACTTAGATCACTACGAGATGA---AAGAAGAGCCTATTAGTGAGAAGAAGTTGGAGGGTGAAGAAACTGAAAAAGAAAATCGGGCAATATTAGAGAAAATCAGGAAGACTGAAAGGCA--AGGCCATTTAAATATGTAAGTGTGTATAAATATC-------TGGACTTTTTGG-TTAAGTAATTATAGTTAAT------------ACCAGGCAATTCATGAACATGCTGATCTCAGCTGCTCTCCTCCTCCATTCCTGCCTTAGAGGTGGATTCAGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106607859 386 - 170124641 AGATATATTCTGTTT--CTTGTTCCCCATTGAGTCAAGAATAATTGAACGTTTGGC----ATAAGAAACTGCTGAAGAAATATTGGTTGAATAACCTAGTATTTCTCTTCTTTTTGCAGAATATAGAAGACTTAGATCACTATGAGATGA---AAGAAGAGCCTATGAGTGGGAAACAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAAGAAGACTGAAAGGTAAGTGACAATTTAAACGTGGAAGCGTGTATAAATATCTAGAGCCTGGATTTTTTGG-TTAAGTAATTATAGTTAAT------------ACCAGGCAATTCATGAACATGCCAATCTCAGCTGCTCTCCTCCTCCATTCCTGCTTTAGTGGTGGATTCAGTCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107345502 384 - 171882078 AGATATATTCTGTTT--CTTGTTCCCCATTGAGTCAAGAATAATTGAACGTTTGGC----ATAAGAAACTGCTGAAGAACTATCGGTTGAATAACCTAATATTTCTCTTCTTTTTGCAGGATATAGAAGACTTAGATCACTATGAGATGA---AAGAAGAGCCTATGAGTGGGAAACAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGTA--TCACAATTTAAACGTGGAAGTGTGTATAAATATCTAGAGCCTGGACTTTTTGG-TTAAGTAATTATAGTTAAT------------ACCAGGCAATTCATGAACATGCCAATCTCAGCTGCTCTCCTCCTCCATTCCTGCTTTAGTGGTGGATTCAGTCA
i macFas5.chr7              I 100 C 0
s papAnu2.JH685126              36912 384 +    130206 AGATATATTCTGTTT--CTTGTTCCCCATTGAGTCAAGAATAATTGAACTTTTGGC----ATAAGAAACTGCTGTGGAAATATCGGTTGAATAACCtagtatttctcttctttttgcaGGATATAGAAGACTTAGATCACTATGAGATGA---AAGAAGAGCCTATGAGTGGGAAACAGGTGGAGGATGaaggaactgaaaaagaaaattgggcAATATTAGAGAAAATTAGGAAGACTGAAAGGTA--CGACCATTTAAATGTGGAAGCGTGTATGAATATCTGGAGCCTGGACTTTTTGG-TTAAGTAATTATAGTTAAT------------ACCAGGCAATTCATGAACACACCAATCTCAGCTGCTCTCATCCTCCATTCCTGAGTTAGTGGTGGATTCAGTCA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065173 374 -  24206276 AGATATACTCTGTTT--CTTGTCCCCCATTGAGTCAATAAT---------TTTGGC----ATAAGAAACTGCTGAAGATA-ATAGGTTGAATAAGCTAATATTTTTCTTCTTTTTGCAGGATATAGAAGACTTAGATCATTATGAGATGA---AAGAAGAGCCTATTAGTGGGAAAATGTTGGAGGATGAAGGAACTGAAAACAAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAAGTA--AGACCATTTAAATGTGTAAGTGTGTATAAATATCTGAAGCTTGGACTTTTTGG-TCAAGTAATTATAGTTAAC------------ACCAGGCAATTCATGAACATGCTGATCTCAGCTGCTCTCCTCCTCCATTCCTGCTTTAGTGGTAGATTCAGTCA
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55180364 358 + 124595110 GGATGCATCCTTTCTTGCTTGTGCTTT------TAAAATTTTATTCAATTTTTTTTTCTGACTAGAAACCAGTGAAGAAGAGAAGCATTAATAAGC-----CTTTTATTCTCTTTGTAGGATATAGAAGACTTGGATCACTATGAGATGAAGGAAGAAGAACCTATTAATGGGAAAAAGTCAGAGGATGAAGGGATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATCAGGAAGACTCAAAGGCA--AGACCATTTAAATGT--AAGTGTGAGTAAGTATCTAGAACCTGAATTTCGTGA-TTACATAATTACAG-----------------------------ATCGAGATACCAATCTCAG-----CTCCCTTTCCATCCTTGACTTAGTAATGGATTTGGTCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51386 360 -  40214260 --------TCTCTTT--TCTGTTTCCTATTAAATCAAGAATAATTGAACTTTTGGC----ATAA--------------------GCTTCAACAAACTAATAGCTTTC------TTGTAGGACATAGAAGACTTGGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGAAAAAAGTCAGAGGATGAAGGAATTGAAAAGGAAAACTTGGCAATACTAGAGAAAATTAGGAAGACTCAAAGGCA--AGACCATCTCAATGT--AAGTATGTGCAAATATCTAGAACCTGGACTTTGGGGATTGAGTAATTATAGGTAATAATTAATATAAAACTGGGCAGTTCATTAGGATAGCAGTCTAAGCTGCCCTC----TCCACTTTCTCCTCTGTTGTACACTCAGCCA
i canFam3.chr30             C 0 C 0

a score=326730.000000
s hg38.chr15_KI270850v1_alt    193961 173 +    430880 TGTGTTTATTGGttttgagacagggtcttgctctgtcgcctgggctagagagcagtagcacaatcatagttcactg----tagcctttatctcccaggc------------------tgcagtggtcctcctacctcagcctcccaagtgtctcagattatagtcatgtgccaccacaccaggctaatttttttg
s panTro4.chr15              17716986 173 -  99548318 TATGTTTATTGGttttgatatagggtcttgctctgtcacctgggctagtgtgcagtggcacaatcatagttcactg----tagcctttatctctcaggc------------------tccagtggtcctcctacctcagcctcccaagtgtctcagactatcgtcatgtcccaccacaccaggctaatttttttg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10055848 173 +  10928107 TACCTTTATTGGttttgagacagggtctttctctgtcacctgggctacagtgcggtggcacaatcatggtgcactg----tagcctttatctcccgggc------------------tccagcggtcctcctggctcagcctccctagtgtctcagactataggcatgtgccaccacaccaggctaatttttttg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102148117 173 + 121039945 TATGTTTATTGGttttgagacagggtcttgctctgtcgcctgggctagagtgtggtagcacaatcatagttcactg----tagcctttatctctcaggc------------------tccggtggtcctcctacctcagcctcccaagtgtctcagactatagtcatgtgccaccacaccaggctaatttttttg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106608245 191 - 170124641 TTTGTTTATTGAttttgagacagggtcttgctctgtcgcctgggctagagtgcggtggcacaatcatagttcactg----tagcctttatctcccaggctccagtggtcctcctgcttccagtggtcctcctgcctcagcctcccaagtgcctcagactatagacatgtggcaccgcaccaggctaaactttttg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107345886 184 - 171882078 TTTGTTTATTGGttttgagacagggtcttgctctgtcacctgggctagggtgcggtggcacaatcatagttcactg----tagcctttatctcccaggctccagtggtcctcctgcctccagtggtcctcctgcctcagcctcccaagtgtctcagactataggcatgtgccaccacacc-------actttttg
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              37296 177 +    130206 TATGGTtattggttttgagacagggtcttgctctgtcacctgggctacaatgcagtggcacaatcatagttcactgtaactaGCCTTTATCTCCCAGAC------------------tacagcagtcctcctgcctcagcctcccaagtgtctcagactataggcatgtgccacctcaccaagttaatttttttg
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065547 184 -  24206276 TTTGTTTATTGGttttgagacagggtcttgctctgtcacctgggctagggtgcggtggcacaatcatagttcactg----tagtctttatctcccaggctccagtggtcctcctgcctccagtggtcctcctgcctcagcctcccaagtgcctcagactataggcatgtggcaccgcacc-------actttttg
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 51746  26 -  40214260 ----TGTTTTGTTTACCTGATGGGTTTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55180722   0 + 124595110 C

a score=239640.000000
s hg38.chr15_KI270850v1_alt    194134 100 +    430880 atttttagtaaagatgaggtctcactgtgttgaccatgctggtcttgaacacctgagttcaagcagtcctgctaccttggcctgcccaagtgctgggatt
s panTro4.chr15              17717159 100 -  99548318 atttttagtagagatgaggcctcactatgttgaccatgctggtcttgaacacctgagttcaagcagtcctactaccttggcctgcccaagtgctgggatt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10056021  96 +  10928107 atttttagtagagatgaggtctca----gttaaacatgttggtcttgaacacctgagttcaagcagtcctgctaccttggcctgcccaagtgctgggatt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102148290 100 + 121039945 atttttagtagagatgaggtctcactatgttgaccatgctggtcttgaacacctgagttcaagcagtcctgctaccttggcctgcccaagtgctgggatt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106608436 100 - 170124641 atttttagtagagatgaggtctcactatgttgaccatgctggtcttgaacacctgaattcaagcagtcctcttaccttggcctgcccaagtgctgggatt
i rheMac3.chr7              C 0 N 0
s macFas5.chr7              107346070 100 - 171882078 atttttagtagagatgaggtctcactatgttgaccatgctggtcttgaacacctgaattcaagcagtcctcttaccttggcctgcccaagtgctgggatt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              37473 100 +    130206 atttttagtagagatggagtctcactgtgttggccatgctggtcttgaacacctgagttcaagcagtcctgCTACCTTGCCCTgaccaagtgctgggatt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065731 100 -  24206276 atttttagtagaaatgaggtctcactgtgttgaccatgctggtcttgaacacctgaattcaagcagtcctcttaccttggcctgcccaagtgctgggatt
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  55180722   0 + 124595110 C
e canFam3.chr30                 51772   0 -  40214260 C

a score=88550.000000
s hg38.chr15_KI270850v1_alt    194234 38 +    430880 acagacatgagccaccatgcctagccACGCTCATATGC
s panTro4.chr15              17717259 38 -  99548318 acagacatgagccaccatgcctagccACACTCATATGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10056117 38 +  10928107 acagacatgaaccaccaggcctagccACGCTCATATGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102148390 38 + 121039945 acagacatgaaccgccatgcctagccATACTCATACGC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108527736 38 - 170124641 acagacatgagccaccatgcccagccACAGTCATATGT
i rheMac3.chr7              N 0 C 0
s macFas5.chr7              107346170 38 - 171882078 acagacatgagccaccatgcccagccACGCTCATATGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              37573 38 +    130206 acagacatgagccagcatgcctagCCACACTCATATGC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065831 38 -  24206276 acagacatgagccaccatgcccagccACACTCATATGC
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  55180722  0 + 124595110 C
e canFam3.chr30                 51772  0 -  40214260 C

a score=3276.000000
s hg38.chr15_KI270850v1_alt    194272 1 +    430880 T
s panTro4.chr15              17717297 1 -  99548318 T
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10056155 1 +  10928107 T
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102148428 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108527774 1 - 170124641 T
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107346208 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              37611 1 +    130206 T
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065869 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55180722 1 + 124595110 T
i mm10.chr9                 C 0 C 0
e canFam3.chr30                 51772 0 -  40214260 C

a score=247543.000000
s hg38.chr15_KI270850v1_alt    194273 97 +    430880 TTGTTGCCGAAGGTTATCTTTCTCATCTATGAATAGCCACGTTTTACCCTGTTCATCTGCTCTTCACATCCTG-GAACCACCTGCTGATCCCTG-TATA
s panTro4.chr15              17717298 97 -  99548318 TTGTTGCCCAAGGTTATCTTTCTCATCCATGAATAGCCACTTTTTACCCTGTTGATCTGCTCTTCACATCCTG-GAACCACCTGCTGATCCCTG-TATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10056156 97 +  10928107 TTGTTGCCCAAGGTTATCTTTCTCATCTATGAATAGCCACTTTTTACCGTGTTCATCTGCTCTTCACATCCTG-GAACCACCTGCTGATCCCTG-TATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102148429 97 + 121039945 TTGTTGCCCAAGGTTATCTTTCTCATCTATTAATAGCCACTTTTTACCCTGTTCATCTGCTCTTCGCATCCTG-GAACCACCTGCTGATCCCTG-TATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108527775 85 - 170124641 TTGCTGCCCAAGGTTATCTTTCTCATCTATGAATAGCCACTTTTTATCCTGTTCATCTGCTCTT-------------CCACCTGCTGATCCCTG-TATA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107346209 96 - 171882078 TTGCTGCCCAGGGTTATCTTTCTCATCTATGAATAGCTACTTTTTATCCTGTTCATCTGCTCTTCACATCCT--GAACCACCAGCTGATCCCTG-TATA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              37612 85 +    130206 TTGTTGCCCAAGGTTATCTTTCTCATCTATGAATAGCCACTTTTTATCCTGTTCATCTGCTCTT-------------CCACCTGCTGATCTCTG-TATA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065870 96 -  24206276 TTGCTGCCCAGGGTTATCTTTCCCATCTATGAATAGCCACTTTTTATCCTGTTCATCTGCTCTTCACATCCT--GAACCACCTGCTGATCCCTG-TATA
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55180723 97 + 124595110 TTGTTGACCTACGCTGCTTCTCCTGATTGTTGACAGCCACTTTCTACCCTGTTCATCTGTTCTTCACATCTTGAAAACAAACTGCTG-TCTCTG-TATA
i mm10.chr9                 C 0 I 453
s canFam3.chr30                 51772 89 -  40214260 TTGTTGTTGAAG------TTTCTCATCTGTTGGTAT---CTTTCTTCCATGCTCCTGTGCTTTTTACGTGCTGGAATTAACCTGCTACTCATTGTTAT-
i canFam3.chr30             C 0 C 0

a score=62299.000000
s hg38.chr15_KI270850v1_alt    194370 28 +    430880 TGCCCCTTTCCAGCTTGTCTATGCTGTG
s panTro4.chr15              17717395 28 -  99548318 TGCCCCTTTCCAGCTTGTCTATGCTGTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10056253 28 +  10928107 TGCCCCTTTCCAGCTTGTCTATGCTGTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102148526 28 + 121039945 TGCCCCTTTCCAGCTTGTCTATGCTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108527860 27 - 170124641 TGCCCCTTTCCAGC-TGTCTATGCTGTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107346305 27 - 171882078 TGCCCCTTTCCACC-TGTCTATGCTGTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              37697 28 +    130206 TGCCCCTTTCCAGCTTGTCTATGCTATT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065966 27 -  24206276 TGCCCCTTTCCAGC-TGTCTATGCTGTT
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 51861 17 -  40214260 GGCTCCTTTCCAGC----CTA-------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55180820 453 + 124595110 I

a score=394877.000000
s hg38.chr15_KI270850v1_alt    194398 141 +    430880 TTCTCTGCTTACCTTCTTTCTGTGGCATCTG-TAAATTCAAGTTCATTCTTTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGACTT-TGACCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTTT
s panTro4.chr15              17717423 141 -  99548318 TTGTCTGCTTACCTTCCTTCTGTGGCATCTG-TATATTCAAGTTCATTCTCTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGACTT-TGATCCATCCTGCTCTGACCAAACCAAAAGTAGGGTTTCTCTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10056281 141 +  10928107 TTCTCTGCTTACCTACCTTCTGTGGCATCTA-TAAATTCAAGTTCATTCTTTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGACTT-TGATCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102148554 140 + 121039945 TTCTCTGCTTACCTTCCTTCTGTGGCATCTG-TAAATTCAAGTTCATTCTTTCCTACAAAACACAAC-CAAATTATTTCTCCTTCGTGAAGCTGACTT-TGATCCATCCTGCTCTGACCAAACCAAAAGCAATGTTTCTCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108527887 141 - 170124641 TTCTCTGCTGACCTTCCTTCTGTGGCATCTG-TATATTCAAATTCATTCTCTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGACTT-CGATCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107346332 141 - 171882078 TTCTCTGCTGACCTTCCTTCTGTGGCATCTG-TACATTCAAATTCATTCTCTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGACTT-TGGTCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              37725 141 +    130206 TTCTCTGCTGACCTTCCTTCTGTATCATCTG-TATGTTCAAATTCATTCTCTCCTACAAAGCACAGCTCcaattatttctcctttgtgaAGCTGACTT-TGATCCATCCTGCTCTGACCAGACCGAAAGTAATGTTTCTCTTT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21065993 141 -  24206276 TTCTCTGCTGACCTTCCTTCTGTGGCATCTG-TACATTCAAATTCATTCTCTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGACTT-TGGTCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTTT
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55181273 138 + 124595110 TGCTGTACTTACTCCCGTACCATAGGTTCTGTTGTGTTCAGATTCAGCC---CCTGCAAACTATTACTCTGCCT-CTGCTCTCCCTTAAACCCGACCT-CTGTCTTTTGCACCCTAACCAACTCAAAAGTAACTTTTCTCTTT
i mm10.chr9                 I 453 I 163
s canFam3.chr30                 51878 133 -  40214260 TTTTATGCTTAC---CCTTCTGTGAGATCTG-TGTATTTAGATTCAGTGTCTTCTACAAAGTACAGTTTAAACT----CTTCCCCACCAAGCTGCCCTCCGATCTCTTGTGCTCTAACGAAGCCAGAAGTA-TTTTTTTCTT-
i canFam3.chr30             C 0 C 0

a score=1784632.000000
s hg38.chr15_KI270850v1_alt    194539 666 +    430880 TGACTTAACATCTCTTTTATGTGAAGCGGCA--GGATGGGAAAGGAACACTGAGTTTGGTGACAGACACaccttttatggtttcactttgctcaaccctaaaatatggagagacagtacatatcttttggatggttgctatgaaaaataaattaaaatgatgcatgtatatacataaaatgcttagacagagtagggaaacat---------ca------aatgatTGTCTGAACAGTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CTCCACAACATCCGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGCAAATGCCAGATGT---TGAAATCAGATA----ACTCTCCCTCCTTCAATCTTATTT-GTATATTAATTTAATTGGTAA-------TTTTTCATACAGCAAAGAAATTTAGTTAATC-TCC-ATATCTTGATTATTTAAAAAACTAAGATTGTAGCATTTGAATTAATGTTACTGTACTTCCTGTGTCTTGTGATCAATTCCAGTTTG---AGTTATCTTCAAAACAAGTAAAAATTAT-----AATTTtgcatgaccgatactatactaaatactttatactaa------taaagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctgtttatactttagagatatgaaaa
s panTro4.chr15              17717564 680 -  99548318 TGACTTAACATCTCTTTTATGTGAAGCGGCA--GGATGGGAAAGGAACACTGAGTTTGGTGACAGACACaccttttatggtttcactttacacaactctaaaatatggatagacagtacatatcttttggatggttgctatgaaaaataaattaaaatgatgcatgt-tacacataaaatgcttagacagAGTAGGGAAACAT---------CA------AATGATTGTCTGAACACTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CTCCACAATATCCGAGGACCAGTTACTTTGTCTTGGGCACAAGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGCAGATGTCAAGTGT---TGCAATCAGATAGATAACTCTCCCTCCTTCAATCTTATTT-GTATATTAATTTAATTGGTAA-------TTTTTCATACAGCAAAGAAATTTAGTTAATC-CCC-ATATCTTGATTATTTAAAAAACTAAGATTGTAGCATTTGAATTAATGTTACTGTACTTTCTGTGTCTTGTGATCAAGTCCAGTTTG---AGTTATCTTCAAAACAAGTAAAAAttattgaataattttgtatgaccgatactatgctaaatactttatacttaatactttatagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctatttatactttagagataggaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10056422 666 +  10928107 TGACTTAACGTCTCTTTTATGTGAAGTGGCA--GGATGGGAAAGGAACACTGAGTTTGGTGACAGACACaccttttatggtttcactttgctcaactctaaaatatggatagaca---------ttttggatggttgctatgaaaaataaattaaaatgatgcatgtatatacacaaaatgcctagacagagtaggGAAACAT---------CA------AATGATTGTCTGAACACTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CTCCACAATATCCGAGGACTGGTTACTTTGTCTTGGGCACAGATTCTCCAAAACAGGGAATGAATTGTAAGGCAAGTAGATGCCAAATGT---TGAAATCAGATAGATAACTCTCCCTCCTTCAATCTTATTT-ATATATTAATTTAGTTGGTAA-------TTTTTCATACAGCAAAGAAATTTAGTCAATCTCCC-ATATCTTGATTATTTAAAAAAGTAAGATTGTAGCATTTGAATTAATGTTATTGTACCTTTTGTGTCTTGTGATCAATTCTAGTTTG---AGTTATCTTCAAAACAAGTAAAAAttattgaacacttttgcatgaccgatactatgctaaatactttatactt-------tatagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctatttatattttagagacaggaaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102148694 673 + 121039945 TGACTTAACATCT-TTTTATGTGAAGCGGCA--GGATGGGAAAGGAACACTGAGTTTGGTGACAGACACacctttcatggtttcactttgctgaactctaaaatatggatagagagtacatatcttttggatggttgctatgaaaaacaaattaaagtgatgcacgtatatacataaagtgcttagacagAGTAGGGAAACAT---------CA------AATGATTGTCTGAACACTTCC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CTCCACAATATCCGAGGACCAGTTACTTTGTCTTGGGCGCAGGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGTAGATGCCAAATGT---TGAAATCAGATAGATAACTCTGCCTCCTTCAATCTTATTT-GTATATTAATTTAATTGGTAA-------TTTTTCTTACAGCAAAAAAATTTAGTTAATC-CCC-ATATCTTGATTATTTAAAAAACTAAGATTGTAGCATTTGAATTAATGTTACTGTACTTTCTGTGTCTTGTGATCAATTCCAGTTTG---CGTTATCTTCAAAACAAGTAAAAAttactgaataattttgcatgactgatactgtgctaaatactttatactt-------tatagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctgtttatattttagagataggaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108528028 665 - 170124641 TGACTTAACATCTCTTTTATTTAAAGTGGCA--GGATGGGAAAGGAACACTGAGTTTGGTGACAGACACACCTTGTATGgtttcactttgctcaactctaaaatatggttagacagtacataccttttgggtgattgctatgaaaaataaatgagaattaactgtgtgtatacataaaatact----tagagtagGGAAACAT---------CA------AATGATTGTCTGAACACTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACTAA-CTCCATGAAAGCTGAGGACCAGTTACTTTGTATTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGCTAGGCAAGTAGATGCCAAATGT---TGAAATCAGATAGATAACTCTCCCTCCTTCAATCTTGTTT-ATATATTAATTTAATTGGTAA-------TTTTTCATAGAGCAAAGAAATTTAGTCAATCCCCCTATATCTTGATTATTTAAAAAACTAAAACTTGTACATTTGAATTAATGTTACTGTACTTTCTGTGTTTTGTGATCGATTCCAGTTTG---AGTTATCTTCAAAACAAGTATAAAttattgaacacttttgcatggccgatactatgctaa-------gtactt-------tatagatcttttcatttagtcttcata----------gccactgtgtgaaataggtgctctttatattttagagataggaaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107346473 672 - 171882078 TGACTTAAAATCTCTTTTAGGTGAAGCGGCA--GGATGGGAAAGAAACACTGAGTTTGGAGACAGACACA---TGTATGgtttcactttgctcaactctaaaatatggttagacagtacatatcttttggatggttgctatgaaaaataaattaaaatgatgtatgtatatacaaaaaatgcccagacagagtaggGAAATAT---------CA------AATAATTGTCTGAACACTTAC----TGCTTCTTGCCTTGTACTAGAGCTATTTACCAA-CTCCACAATATCCGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAGCAGGGAATGAATTGTTAAGCAAGTAGATATCAAATGT---TGAAATCAGATAGATAACTCTCCCTCCTTCAATCTTGTTT-ATATGTTAATTTAATTGGTAA-------TTTTTCATATGGCAAAGAAATTTAGCCAATGCCCC-ATATCTTGATTATTTAAAAAACTGAGATTGTAGCATTTGAATTAATGTTACTGTTCTTTCTGTGTCTTGTGATCAATTCCAGTTTG---AGTTATCTTCAAAACAAGGATAAAttattgaacacttttgcatgaccgatactatgctaaatactttatactt-------tatagatcttttcatttattcatcata----------gccactgtgtgaaataggtgctcttcatattttagagataggaaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              37866 667 +    130206 TGACTTTACATCTC-TTTATGTGAAGCAGCA--GGATGAGAAAGGAACACTGAGTTTGGTGACAAACACACCTTGTATGGTTTCACTTTGCTCAACTCTAAAACATGGATAGACAGTACATATCTTTTAGATAGttgctatgaaaaataaattaaaatgatacatgtatacacataaaaTGCTTAGACAGTGTAGGGAAACAT---------CA------GATGTTTGTCTAAACACTTAC----TGCTTCCTGTCTTGCATTAGAGCTATTTACTGA-CTCTGCGATATCTGAGGACCAGTTACTTTGTCTTGGGTACAGGTTCTCCAAAACAGGGAATGAATTGTTAGCCAAGTAGATGCCAAATGT---TGAAATCAGATAGCTAACTCTCCCTCATTCaatcttattt-atatattaatttaataggtag-------tttttcatacTGCAAAGAAATTTAGTTAATCCCCC-ATATCTTGATTATTTACAAAACTAAGATTGTAGCATTTGAATTAATGTCACTGTACATTCTGTGTCTTGTGATCAATTCCAGTTTG---AGTTATCTTCAAAAGAAGTATAAATTATTGAACACTTTTGCATGACCGATACTATGCTAA-------ATACTT-------TATAGACCTTTTCATTTAGTCATCATA----------GCCACTGTGTGAAATAGATACTCTTGATATTTTAGAGATAGGAAAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21066134 672 -  24206276 TGACTTAACATCTCTTTTAGGTGAAGCAGCA--GGATGGGAAAGGAACACTGAGTTTGGAGACAGATACG---CATATGgtttcacttcgctcaactctaaaatatggttagacagtacatatcttttggatggttgctatgaaaaataaattaaaatgatgcatgtaTATACAAAAAAGGCCTAGACAGAGTAGGGAAATAT---------CA------CATAATTGTCTGAACACTTAC----TGCTTCCTGCCTTGTACTAGAGCTATTTACCAA-CTCCACAATATCCGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGTAGATGCCAAATGT---TGAAATCAGATAGATAACTCTCCCTCCTTCCATCTTATTT-ATATGTTAATTTCATTGGTAA-------TTTTTCATACGGCAAAGAAATTTAGCCAATCCCCC-ATATCTTGATTATTTAAAAAACTGAGATTGTAGCATTTGAATTAATGTTACTGTGCTTTCTGTGTCTTGTGATCAATTCCAGTTTG---AGTTATCTTCAAAACAAGGATAAAttattgaacacttttgcatgaccgatactatgctaaatactttatactt-------tatagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctcttcatattttagagataggaaaa
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55181574 638 + 124595110 TGATTTAACATACTATTTATGAGAAGAAACA--TGGCAATATAAG-ATGCATAGTTTAGTGAAAAACATGCA-TGTGTGGCTTTGGATTGTTCAACTTTAAAATGTAGTCAGACAGTATATACCTTTTGGAAGTCT--TGTGAAAAATG--------------------------AAAATGGGTTGGTAGGGTATGTCAATGC---------CAATATGCATTGGCAGTCTGGTTGTCTGA----CACTTCCTACCTTGTTTTAGAGCAGCTTATTAAGCTCTATAAAGTC--AGGGCCAGCTGCTTTGTTTTAGGCA----------AACACAGTGAATGGATTGTTATACAAGTTAATGTCAAGAATGAATTATAACAAGTAAATTCTTTTCCTTCCTTCAATCATATTTAATACACTATTTTAATTGGCAA-------GTCTTT-TGTTGCAGAGAACTTTAACCAAG--CCC-ATATCTTGATTATTAAAGTAAGTT---TTGTAGCACCTGAATTAAT---ACTTTATTTGCTGTGTCTGATGATGGACTTCAGTTTGTATGGTTATAGTTAGAACATCTGCAAGCTATTGGATACTCTGACATAG--AATA--AGgctaagtactttatatta-------------ccttcccatttcatcttcatagaatctttatgccattgtgggaaatagacattcttcatatcttatagatacaaaaa
i mm10.chr9                 I 163 I 620
s canFam3.chr30                 52011 634 -  40214260 TGACTTAACATCTCTTTTATGTGAAGTGGAATGGGGCGTGAAATGAACAGTGAGTCTGGTAATAGACACAAc----------tcagtttcctcaactctaaaatatggataa----tacatactttttggttgattgctgagaagaataaatgagaacgatgcatat--------aaaatgcC----CAAAGTAGGGAAACGTGTACAAGTCCG------GCTATTTGCCTCAACACTTCCGACTTACTTACTGCCTTCCATTAGAGCTGTTTATCCA-ACCCATGACATCTGAGGAC------CTTTGCTTTAGACACAGGTTCTCAGAAGCCAGGATTCAATTACTATGTAGGGAGATGCTAGATGT---TGTAAGGAGATAGATTAATCTCTCTCCTTCTGTCTTACTG----TATTAATTTAATCGGCAAATCTTTTTTTCTCTTTTTAGAGAGTAATTTAGCTC----TAC-TTATCTTGATTACCTAAAAAAATC--CTTGTAGCATTTAAATTAATG---ATTTACTTTCTG----TCGTGATTGCTTTCAGTTTGTA-TATTATAGTCAAAATGActacgaattattgaatatttttgcaagagagacactaagctag-------gtactc-------ta----ccttccgatttaacctttgta----------gccactttataaaata----ttgttctta-ttcataggtgtgaaa-
i canFam3.chr30             C 0 C 0

a score=323164.000000
s hg38.chr15_KI270850v1_alt    195205 142 +    430880 acttttcatatttta--tagatatgaaatgagttcaggtttacatagctaggaggtaataTTTTTATAAACTTGATTTTTTTCC-CCCTTCAAAGTCTAGTG-----CAGTCTTTAAAACCTCTAGTTTCACATGACCAAAAAGTAGTTC
s panTro4.chr15              17718244 139 -  99548318 act---catatttta--tagatatgaaatgagttcaggattatatagctaggaggtaataTTTTTATAAACTTGATTTTTTTTC-CCCTTCAAAGTCTAGTG-----CAGTCTTTAAAAGCTTTAGTTTCACATGACCAAAAAGTAGTTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057088 140 +  10928107 acttttcatatttta--tagatatgaaatgagttcagggttacatagctaggaagtaataTTTTTATAAACTTGATTTTTTT---CCCTTCAAAGTCTAGTG-----CAGTCTTTAAAACCTTTAGTTTCACATGACCAAAAAGTAGTTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149367 142 + 121039945 acttctcatatttta--tagatatgaaatgagttcagggttacatagctaggaggtaataTTTTTATAAACTTGATTTTTTTTC-CCCTTAAAAGTCTAGTG-----CAGTCTTTAAAACCTTTAGTTTCACATGACCAAAAAGTAGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108528693 146 - 170124641 agttctcatgtttta--tagatatgaaatgagttcatgattacatagctaagaagtaataTCTTCATAAACTAGA-TTTTTTTC-TCCTTCAAAGTATAGTATAGTGCAATCATTAAAATCTTTAGTTTCACATGACCAAAAAGTAGTTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107347145 142 - 171882078 gcttctcatatttta--tagatatgaaatgagttcatggttacatagctaagaagtagtaTTTTTATAAACTTGATTTTTTTTC-TCCTTCAAAGTCTAGTA-----CAGTCTTTAAAACCTTTGGTTTCACATGACCAAAAAGTAGTTC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              38533 141 +    130206 ACTTCTCATATTTTG--TAGATATGAAATGAGTTCATGGTTACATAGTTAGgaagtaatatttttatcaacttGA-CTTTTTCG-CCCTTCAAAGTCTAGCG-----CAGTCTTTAAAACCTTTAGTTTCTCATGACCAAAAAGTAGTTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21066806 142 -  24206276 gcttctcatatttta--tagatatgaaatgagttcatggttacatagctaagaagtaataTTTTTATAAACTTGATTTTTTTTC-TCCTTCAAAGTCTAGTA-----CAGTCTTTAAAACCTTTGGTTTCACATGACCAAAAAGTAGTTC
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 52645 128 -  40214260 ----ctagggtttaaaccagttaagtaatgtattcaaggtcacaaaggta-gaagtaaaagCTTTGTGAATCTGATTGCCACCCATCTCCCAAAGTATAGTG-----TGGACATTAACATTTTAAATTTTACATGATC------------
i canFam3.chr30             C 0 I 240
e mm10.chr9                  55182212 620 + 124595110 I

a score=281388.000000
s hg38.chr15_KI270850v1_alt    195347 112 +    430880 CATTTCTGTTTAGTCTTAGGATAAGATATGGATGTGTTTTCATCTTTAGAGAAGTCCCTGCACTGAAA--AACTGAAACCAGTTGCATGTAGGCACA--------CGTGGTTCTCAGTGTCT
s panTro4.chr15              17718383 112 -  99548318 CATTTTTATTTAGTCTTAGGATAAGATATCGATGTGTTTTCATCTTTAGAGAAGTCCCTGCACTGAAA--AACTGAAACCACTTGCATGTAGGCACA--------CATGGTTCTCAGTGTCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057228 112 +  10928107 CATTTCTATTTAGTCTTAGGATAAGATATTGATGTGTTTTCATCTTCAGAGAAGTCCCTGCACTGAAA--AACTCAAACCAGTTGCATATAGGCACA--------CATGGTTCTCAGTGTCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149509 112 + 121039945 CATTTCTGTTTAGTCTTAGGATAAGATATCGATGTGTTTTCATCTTTAGAGAAGTCCCTGCACTGAAA--AACTGAAACCAGTTGCATGTAGGCACA--------CATGGTTCTCAATGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108528839 111 - 170124641 CATTTCTATTTAGTGCTAGGATAAGATATCAGTGTGTTTTCATCCTTATAGAAGTCCCTGCAC-GAAA--AACTGAAATGAGTTGCATGTAGGCACA--------CATGGTTCTCAGTGTCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107347287 111 - 171882078 CATTTCTATATAGTCTTAGGATATGATATCGATATA-TTTCATCTTTAGAGAAGTCCCTGCACTGAAA--AACTGAAACCTGTTGCATGTAAGCACA--------CATGGTTCCCAGTGTCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              38674 111 +    130206 CATTTCCGTTTAGTCTTAGGATAAGATATTGATCTGTTTTCATCATTACAGAAGTCTCTGCACTGAAA--AACTGAAACCAGTTGCATGTAGGCGCA--------CATGGTCCTCAGTGTC-
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21066948 111 -  24206276 CATTTCTATATAGTCTTAGGATATGATATCGATATT-TTTCATCTTTAGAGAAGTCCCTGCACTGAAA--AACTGAAACCAGTTGCATGTAAGCACA--------CATGGTTCCCAGTGTCT
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 53013 122 -  40214260 CATTCATATTTAGTCTTAGAATAAGATATTGGTACATTTTCATTTTTAAAGAAATCCCAACATGGAAAAGAACTGAAACTAGTTGCATACAAGTGCAACTTGCATTATTTTTCTCAGTttct
i canFam3.chr30             I 240 I 206
e mm10.chr9                  55182212 620 + 124595110 I

a score=201312.000000
s hg38.chr15_KI270850v1_alt    195459 78 +    430880 TAATGTGTGAACTAGACCATCTGTGTAATATTCTTGCTTGTAGTCTTATGAATGGAAGCCTATTTTACTTAATATTGT
s panTro4.chr15              17718495 78 -  99548318 TCATGTGTGAACTAGACCATCTGTGTAATATTCTTGCTTGTAGTCTTATGAATGGAAGCCTATTTTACTTAATATTGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057340 78 +  10928107 TCATGTGTGAACTAGACCATCTGTGTAATATTCTTGCTTGTAGTCTTATGAATGGAAGCCTATTTTAGTTAATAATGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149621 78 + 121039945 TCATGTGTGAACTAGACCATCTGTGTAATATTCTTGCTTGTAGTCTTATGAATGGAAGCCTATTTTACTTAATATTGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108528950 78 - 170124641 TAATGGGTGAACTAGACCATCTGTGCAATATTCTTGCTTGTAGTCTTATGAATGGAAGTCTATTCTAGTTAATAATTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107347398 78 - 171882078 TAATGTGTGAACTAGACCATCTGTGTAATATTCTTGCTTGTCGTCTTATGAATGGAAGCCTATTTGAGTTAATAATGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              38785 76 +    130206 TAATGTGTGAACTAGACCATCTGTGTAATATTCTTGCTTGTAGTCTTATGAATGAAAGCctattttagttaataa--t
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21067059 78 -  24206276 TAATGTGTGAACTAGACCATCTGTGTAATATTCTTGCTTGTCGTCTTATGAATGGAAGCCTATTTGAGTTAATAATGT
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 53341 76 -  40214260 TAATATGTAAAGTAGGCATTCATTATTGCATTCTTGCCTATAGTTTGACTAATGAAA--CTGTTTTAGTTGATAGTGT
i canFam3.chr30             I 206 I 1053
e mm10.chr9                  55182212 620 + 124595110 I

a score=18100.000000
s hg38.chr15_KI270850v1_alt    195537  9 +    430880 GTCACCTTG----------
s panTro4.chr15              17718573  8 -  99548318 GTC-CCTTG----------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057418 19 +  10928107 GTCACCTTGAGTGTCTTCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149699  9 + 121039945 GTCACCTTG----------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108529028 19 - 170124641 GTTACCTTGAGTGCCTTCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107347476 19 - 171882078 GTCACCTTGAGTGTCTTCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              38861 19 +    130206 gtcACCTTGAGTGTCTTct
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21067137 19 -  24206276 GTCACCTTGAGTGTCTTCT
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  55182212 620 + 124595110 I
e canFam3.chr30                 53417 1053 -  40214260 I

a score=493152.000000
s hg38.chr15_KI270850v1_alt    195546 178 +    430880 AGTATTTTCAAAAATTGCTGGGGTTTGGAATAGACTCATACTGAATTCTATGCTATCGTGGAGTCCATGGTTATCTGAACATGTTGGCTAGA---------GTTTTTTAGGTGATAAGAAAAAGGAAATGAACCAGACTTGTGTCTAGTTTTATA-TT-CTCTTGAAACTTCATAACGCTTCATTTAAT
s panTro4.chr15              17718581 178 -  99548318 AGTATTTTCAAATATTGCTGGGGTTTGAAATAGACTCATACTGAATTCTATGCTATCGTGGAGTCCATGGTGGTATGAACATGTTGGCTAGA---------GTTTTTTAGGTGATAGGAAAATGGAAATGAACCAGACTTGTGTCTAGTTTTATA-TT-CCCTTGAAACTTCATAATGCTTCATTTAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057437 178 +  10928107 AGTATTTTCAAAAATTGCTGGGGTTTGGAATAGACTCATACTGAATTCTATGCTATCATGGAGTCCATGATGGTCTGAACATGTTGGCTAGA---------GTTTTTTACCTGATAAGAAAAAGGAAATGAACCAGACTTGTGTCTAGTTTTATA-TT-CTCTTGAAACTTCGTAATGCTTCATTTAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149708 178 + 121039945 AGTATTTTCAAAAATTGCTGGGGTTTGGAATAGACTCATACTGAATTCTATGCTATGGTGGAGTCCGTGGTGATCTGAACATGTTGGCTAGA---------GTTTTTTAGGTGATAAGAAAAAGGAAATGAGGCAGACTTGTGTCTAGTTCTATA-TT-CTCATGAAACTTCATAATGCTTCGTTTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108529047 178 - 170124641 AGTATTTTCAAAAATCGCTGGGGTTTGGAATAGACTCATACTGAATTCTATGCTATCGTGGAGTCCATGGTGGTCTGAACATGTTGGCTAGA---------GTTTTTCAGATGACAAAAAATAGGAAATGAACCAGACTTTTGTCTAGTTTTATA-TT-CTCTTGAGACTTCATAATGCTTCATTTAAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107347495 178 - 171882078 AGTATTTTCAAATATTACTCAGGTTTGGAATAGACTCATACTGAATTATATGCTATCGTGGAGTCCATGGTGGTCTGAACATGTTGGCTAGA---------GTTTTTCAGGTGATAAGAAAAAGGAAATGGACCAGATTTGTGTCTAGTTTTATA-TT-ATCTTCAAACTTCATAATGCTTCATTTAAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              38880 176 +    130206 agtattttcaaaatttgctGGGGTTTGGAATAGACTCATACTGAATTCTAGGCTATCATGGAGTCCATGGTGGTATGAACGTGTTGGCTAGA---------GGTTTTTAGGtgataagaaaaaggaaatgaacc--aCTTGTGTCTAGTTTTATA-TT-CTCTTGAAACTTCATAATGCTTCatttaat
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21067156 178 -  24206276 AGTATTTTCAAAAATTGCTCGAGTTTGGAATAGACTCATACTGAATTCTATGCTTCTGTAGAGTCCATGGTGGTCTGAACATGTTGGCTAGA---------GTTTTTCAGGTGATAAGAAAAAGGAAATGGACCAGACTTGTGTCTAGTTTCATA-TT-CTCTTCAAACTTCATAATGCTTCATTTAAT
i chlSab2.chr29             C 0 I 299
s mm10.chr9                  55182832 161 + 124595110 AGCATTTTTAGAAGTTGT---AGTTTGGAATAGACTCATACTGAACTCTAAACTGTCA--GAGTCCATGGTGTTCTGGGCATACT-ATGAGG---------CCTCCCCTCAGGATA--------GAAACAAGCAACACATGTCTTCAGTTTTCTGTTT-TTCTTAACATTTCATAGTCCTTTAAT----
i mm10.chr9                 I 620 C 0
s canFam3.chr30                 54470 186 -  40214260 AATATTTTAAAAAATCAGTGGAGTTTGAAATAGGTTAATACTAAGTTCTAGGCTATTGCAGGAGCCATGGTGATCTAGACTTG-TGGTTAGACATTTTTTTGTTTTTCAGATGTTAACAAAGAGCAAATGAGCCAGACTTGTCCCCCATTTTATA-TTCCTATTTAAACTTCATAATCGTCAATTAAA-
i canFam3.chr30             I 1053 C 0

a score=-144.000000
s hg38.chr15_KI270850v1_alt    195724 19 +    430880 -----TGTCttttttttttttttt
s panTro4.chr15              17718759 16 -  99548318 -----TGGACTTTTTTCTTTT---
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057615 16 +  10928107 -----TGGACTTTTTTTTCTT---
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149886 16 + 121039945 -----TGGATTTTTTTTTTTT---
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108529225  6 - 170124641 -----TGGACT-------------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107347673 16 - 171882078 -----GGGACtttttcttttt---
i macFas5.chr7              C 0 I 283
s papAnu2.JH685126              39056  8 +    130206 -----tgtacttt-----------
i papAnu2.JH685126          C 0 C 0
s mm10.chr9                  55182993  4 + 124595110 -----TGCA---------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54656 18 -  40214260 CTTCTTTGATTTTTTTTT------
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21067334 299 -  24206276 I

a score=76588.000000
s hg38.chr15_KI270850v1_alt    195743 40 +    430880 tttttttACTTCTTAAATTGTTGAGTGGTGATCCATTTTT
s panTro4.chr15              17718775 33 -  99548318 -------ACTTCTTAAATTGTTGAGTGATGATCCATTTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057631 32 +  10928107 --------CTTCTTAAATTGTTGAGTGGTGATCCATTTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149902 29 + 121039945 -----------CTTAAATTGTTGAGTGGTGATCCATTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108529231 40 - 170124641 TTTTTTTAGTTCTTAAAATGTTGAGTGGTAATCCATTTTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107347972 40 - 171882078 TTTTTTTACTTCTGAAATTGTTAAGTGATGATCTAATTTT
i macFas5.chr7              I 283 C 0
s papAnu2.JH685126              39064 40 +    130206 ttttttcactttttagattgttgaatagtgatcaattttt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21067633 40 -  24206276 TTTTTTTACTTCTGAAATTGTTAAGTGATGATCTAATTTT
i chlSab2.chr29             I 299 C 0
s mm10.chr9                  55182997 37 + 124595110 CTTCTTGATTTCTTAA--TACTGAGTGGTAGTC-ATTTTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54674 25 -  40214260 ---------------AAATGTCTAATTGTGATCTGTTCTT
i canFam3.chr30             C 0 I 8

a score=2300.000000
s hg38.chr15_KI270850v1_alt    195783 1 +    430880 A
s panTro4.chr15              17718808 1 -  99548318 G
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057663 1 +  10928107 A
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149931 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108529271 1 - 170124641 A
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107348012 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              39104 1 +    130206 a
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21067673 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55183034 1 + 124595110 A
i mm10.chr9                 C 0 I 4
e canFam3.chr30                 54699 8 -  40214260 I

a score=626723.000000
s hg38.chr15_KI270850v1_alt    195784 318 +    430880 TTGTAAT----------Ctttctctttt----------------------------ttcttttttttt----tcttttgagatggagtcttgctctgtggcccaggccagagttcagtggcaccatctcagctcactactacctccacctcccaggttcaagtgattatcttgcctcaacttcccgagtagctgggac----------------tacaggcacatgcaaccatgcccggccaacttttgta-ttttttaaatcagagatggggtttcatgctgatgaccaggctggtttcaaactcttggcctcaagtgatccacctgcctcggcctcccaaagtgctgggattataggtgtgaac-cactgtgcctg
s panTro4.chr15              17718809 349 -  99548318 TTGTAAT----------CTttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttgagatggagtctcgctctgtggcccaggccagagtgcggtggcaccatctgaactcactactatctccacctcccaggttcaagtaattatcttgcctcagcttctccagtagctgggac----------------tacaggcacgtgcaaccatgcccggccaacttttgta-tttttttagt-ggagatggggtttcatcctgatggccaggctggtttcaaactcttggcctcaagtgatccgcgcccctcagcctcccaaagtgctgggattacaggtgtgagc-caccgtgcctg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057664 315 +  10928107 TTGTAAT----------Ctttttctttt----------------------------ttctttgttt------tcttttaagatggagtctcgctctgtggcccaggccagagtgcagtggcaccatctcaactcactactacctccacctcccaggttcaagtgattatcttgcctcagcttcccaagtagctgggac----------------tacaggcacgtgcaaccatgcccagccaacttttgta-tttttttagt-agagatggggtttcatgctgacggctaggctagtttcaaattcttggcctcaagtgatccacctgcctcggcctcccaaactgctgggattacaggtgtgagc-caccgtccctg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102149932 319 + 121039945 TTGTAAT----------Ctttttctttt----------------------------ttctttttttt-----tcttttgagatggagtcttgctctgtggcccaggtcagagttcagtggcaccatctcagctcactactacctccacctcccaggttcaagtgattatcttgcctcaacttcccgagtagctgggac----------------tacaggcacatgcaaccgtgcccgtccaacttttgtattttttttaattagagatggggtttcatgctgatggcgaggctggtttcaaactcttggcctcaagtgatccacccgcctcagccttctgaaatgctgggattacagctgggattacactgtgcctg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108529272 350 - 170124641 TTGTAATTTCTCTCTCTCTCtctctttttttttctc--------------------tttttttttttt----tcttttgagatggagtctttctctgtggcccaggccagagtgctgtggtgccatctcagctcactactacctccaccttccgggttccagtgattctcttgcctcagcttcctgagtagctgaaatgagttgcatataggcacacaggcgcatgcaaccaggcccagccaacttttgta-tttttgtagt-ggagatggggtgtcatcctgatggccagggtggtttcaaactcccggcctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagc-c-ccctgcctg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107348013 305 - 171882078 TTGTAAT-------------------------------------------------Ctttttcttttt----tcttttgagatggagtcttgctctgtggcccaggccagagtgcagtggcaccatctcagctcagtattacctccaccttctgggttcaagtgattctcttgcctcagcttccctagtagctgggac----------------tacaggcacgtgcatccacacctcgccaactttcgta-tttttttagt-atagatggggtttcatcctgacggccaggctggtttcaaactcttggcctcacgtgatctacctgcctcggcctcccaaagtgctgggattacaggtgtgagc-c-ccctgcctg
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              39105 324 +    130206 ttgtaat----------ctttttcttttttctttt---------------------ctgttttttttt----tcttttgagaaggagccttgctctgtggcccaggccagggtgcagtggcaccatctcagctcactaccacctccacctTGCAGGTTCAACTGATTAtcttccctcagcttcctgagcacctgggac----------------tacaggcacatgcaaccacacctgatcaacttttgta-attttttact-agagatgtggtttcatccTGATGGCCAGgttgatttcaaactcctggcctcaagtgatccacctgcctcagcctcccaaagtgctgggattacacgtgtgagc-caccatgcctg
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21067674 309 -  24206276 TTGTAAT----------Cttt-----------------------------------ttcttttttctt----tctttcgagatggagtcttgctctgtggcccaggccagagtgcagtggcaccatctcagctcagtattacctccaccttccgggttcaagtgattctcttgcctcagcttccctagtagctgggac----------------tacaggcacgtgcatccacacctggccaacttttgta-attttttagt-ataggtggggtttcatcctgacggccaggctggtttcaaactcttggcctcacatgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagc-c-ccctgcctg
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  55183035   4 + 124595110 I
e canFam3.chr30                 54699   8 -  40214260 I

a score=7838.000000
s hg38.chr15_KI270850v1_alt    196102 3 +    430880 gcT
s panTro4.chr15              17719158 3 -  99548318 gcT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057979 3 +  10928107 gAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102150251 3 + 121039945 gcT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108529622 3 - 170124641 gcT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107348318 3 - 171882078 gcT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              39429 3 +    130206 gct
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21067983 3 -  24206276 gcT
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55183039 3 + 124595110 GTT
i mm10.chr9                 I 4 C 0
e canFam3.chr30                 54699 8 -  40214260 I

a score=1068875.000000
s hg38.chr15_KI270850v1_alt    196105 422 +    430880 ACTGT---AATCTTTTAGAGCAGGTTGAAATACCTTAAATCTTTAA--ATTAGTTGGCTCAGTAGACCCTGGTAAACAGCGGCTTTTGTGTTTCCGGCTGAAGTGTCTGGGTCAGTGCAAGCTTGCAAGCTTCAGATAGACTTATACATATACAGGGCTCAGGGACATATACAGATCACAGAGTTATAAGACAGGTAAGGA-----------------------TCTCTAAAT--------------------CCCTTC---TCTT-----------------------------------ATTGTTCTTTTGTTC-----TTTTCTGTT-------------GTCAGA-----TTATA--------------------AATGTCATTTCTTAAAGC-----TGGACAGAAATGGAAATGTTTACTAGCTTTATTT------TGTGAAACTCAAATGCAATCAAGTTC-CAAAAGATGTAGGGGGTAAGATAGGATGAGTTTGCTTG-TTTTT--GGATTTAAAGAAATTG-TTTTTATAGGTCCGTTGGAATTTT-TTTGGTCATCC
s panTro4.chr15              17719161 414 -  99548318 ACTGT---AATCTTTTAGAGCTGGTTGAAATACCTTAAATCTTTAA--ATTAGTTGGCTCAGTAGACCCTGGTAAACAGCAGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAGTGCAAGCTT--------CAGATAGACTTA-----AGAAAGAGTTCAGGGACTTATACAGATCACAGAGTTATAAGACAGGTAAGGA-----------------------TCTCCAAAT--------------------CCCTGC---TCTTCTT--------------------------------ATCATTCTTTTGTTC-----TTTTCTGTT-------------GTCAGA-----TTATA--------------------AATGTTGTTTCTTAAAAC-----TGGACAGAAATGGAAATGTTTACTAGCTTTATTT------TGTGAAACTCAAATGTAATCAAGTTC-CAAAAGATGTAGGGAGTAAGATAGGATGAGTTTGCTTG-TTTTT-TGGAATTAAAGAAATTG-TTTTTATAGGTCCATTGGAATTTTATTTTGCCATCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10057982 412 +  10928107 ACTGT---AATCTTTTAGAGAAGGTTGAAATACCTTAAATCTTTAA--ATTAGTTGGCTCAGTAGACCCTGGTAAGCAGCGGCTTTTATGTTTCGGGCTGCAGTGTCTGGGTCAGTGCAAGCTT--------CAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACAGATCAC--AGTTATAAGACAGGTAAGGA-----------------------TCTCTAAAT--------------------CCCTGC---TCTTCTT--------------------------------ATCATTCTTTTGTTC-----TTTTCTGTT-------------GTCAGA-----CTATA--------------------AATGTTATTTCTTAAAAC-----TGGACAGAAATGGAAATGTTTACTAGCTTTATTT------TGTGAAACTCAAATGGAATCAAGTTC-CAAAAGATGTAGGGGGTAAGATAGGATGAGTTTACTTG-TTTTT-TGGATTAAAATAAATTG-TTTTTATAGGTCTGTTGGAATTCTATTTTGTCATCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102150254 421 + 121039945 ACTGT---AATCTTTTAGAGCAGGTTGAAATACCTTAAATCTTTAA--ATTAGTTGGCTCAGTAGACCCTGGTAAACAGCGGCTTTTGTGTTTCCAGCTGCAGTGTCTGGGTCAGTGCAAGCTTGCAAGCTTCAGATAGACTTA-----CAGGAGAGCTCAGGGACATATACAGATCACAGAGTTATAAGACAGGTAAGGA-----------------------TCTCTAAAT--------------------CCCTGC---TCTTCTT--------------------------------ATTGTTCTTTTGTTC-----TTTTCTGTT-------------GTCAGA-----TTATA--------------------AATGTCATTTCTTAAAGC-----TGGACAGAAATGGAAATGTTTACTAGCTTTATTT------TGTGAAACTCAAATGCAATCAAGCTC-CAAAAGATGTAGGGGGTAAGATAGGATGAGTTTGCTTG-TTTTT--GGATTTAAAGAAATTGTTTTTTATAGGTCCATTGGAATTTT-TTTGGTCATCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108529625 407 - 170124641 ACTGT---AATCTTTTAGAGCAGGTTGAAATACCTTAAATCTTTAA--ATTAGTTGGCTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAGTGCAAGCTT--------CAGATAGATTTA-----TGAAAGAACTCGGGAACATATATAGATCACAGAGTTATAAGACAGGTAAGGA-----------------------TCTCTAAAT--------------------CCCTGC---TCTT-----------------------------------ATTGTTC-TTTGTTC-----TTTTCTGTT-------------GTCAGA-----TTATA--------------------AATATCATTTCTTAAAAC-----TGGACAGAAATGG-AATGTTTACTAGCCTTAATT------TGTGAAACTCAAATGCAATCAAGTTC-CAAAAGATGTAGGACGCAAGATAGGATGAGTTTGCTTGTTTTTT--GGATTTGAAGAAATTG-TTTTTGTAGGTCCGTCGGAA-TTT-TTTTGTCATCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107348321 408 - 171882078 ACTGT---AATCTTTTAGAGTAGGTTGAAATACCTTAAATTTTTAA--ATTAGTTGGCTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAGTGTAAGCTT--------CAGATAGACTTA-----CGGAAGAGCTCAGGGACATATATAGATCACAGAGTTATAAGACAGGTAAGGA-----------------------TCTCTAAAT--------------------CCCTGC---TCTT-----------------------------------ATTGTTC-TTTGTTC-----TTTTCTGTT-------------GTCAGA-----TTATA--------------------AATATCATTTCTTAAAAC-----TGGACAGAAATGGAAATGTTTATTAGCTTTATTT------TGTGAAACTCAAACACAATCAAGTTC-CAAAAGATGTAGGAGGTAAGATAGGATAAGTTTGCTTG-TTTTT--GGATTTAAAGAAATTG-TTTTTATAAGCCCATTGGAATTTT-TTTTGTCATCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              39432 396 +    130206 actgtTTCAATCTTTTAGAGCAGGTTGAAATACCTCAAATCTTTAC--ATTAGTTGATTCAGTCGACCCTGGTAAACAGTGGCATTTCTGCTTCAGCCTGCAGTGTCTGGGTCAGTGCAAGCTT--------CAGATAGACTTA-----TGAAAGGGCTCAGGGACATATACAGATCACAGAGTTATAAGACAGGTAAGGA-----------------------TCTCTAAAT--------------------CCCTGCTTTTCTC-----------------------------------actgttcttttgttc-----ttttctgtt-------------gtCCGA-----TTATA--------------------AATGTCATTTCTTAAAAC-----TGGacagaaatggaaatgtttaCTAGCTTTATTT------TGTGAAACTCGAATGCAATCAAGTTC-CAAAAGATGTAGGGGGTAAGATAAGATGAGTATGCT----------------------ATTA-GTTTTACAGGCCTGTTGGAATTCT-TTTTGTCATCT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21067986 407 -  24206276 ACTGT---AATCTTTTAGAGCAGGTTGAAATACCTTAAATCTTTAA--ATTAGTTGGCTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAGTGCAAGCTT--------CAGATAGACTTA-----CAGAAGAGCTCAGGGACATATAGAGATCACAGAGTTATAAGACAGGGAAGGA-----------------------TCTCTAAAT--------------------CCCTGC---TCTG-----------------------------------ATTGTTCTTTTGTTC-----TTTTCTGTT-------------GTCAGA-----TTATA--------------------AATGTCATTTCTTAAAAC-----TGGACAGAAATGGAAATGTTTATTAGCTTTATTT------TGTGAAACTCAAACACAATCAAGTTC-CAAAAGATGTAGGGGGTAAGATAGGATAAGTTTGCTTA-TTTTT--GGATTTAAAGAAATTG-TTTTTATAAGCCCATTGGAA--TA-TTTTGTCATCT
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55183042 489 + 124595110 ACTGT---AAAATTTTACATCAGGCTTTGATACCTTAAGCCTTTAATTATTAAT----------------------------------TGTTTCAGGGTGCAGTGTCTGGGTCAGTACAAGCAT--------CAGACAGACTGA-----TGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAGGTGAGGCCCTGGCTCTGCTGGCCATTTGCTTCTTTACATGGAATGTTGTTTCTCTTTTGCTTTGC---TTTCCTTTTGGGGAGTGATGGGGGGACCATTTAGCGCAAACTGTTTTTGAACTCACTATTTTTCTGTTTGGTCATGATGGGGTTAGA-----TAATGTGGGGCCACCACACCAACTTTGTGTCATTTACTGTAATGTAGGTAGACAGAGTTGGAAATTTTTATTAATGTTATTTTAGAGATGTGAAACTCAGGTTTAACGAAATTC-TAAAAGATAAAAG-----AGATAAAATGAGTTTATCTT-TTTGTTTGTATtt-------ttg-cttttttagac-----agggtttt-tctgtgtatcc
i mm10.chr9                 C 0 I 396
s canFam3.chr30                 54707 399 -  40214260 ATTGT---AAACCTTCATTTCAGATTTCTATACCTGAAATCTTCA---GTTATTTGACTCCATAGATCCTGGTAAACAGCAGTTTTTATGTTGCAGGGTGCAGTGTCTGGGTCTGTGCAAGCTT--------CAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACCGATCACAGAGTTATAAAGCAGGTAAGGA-----------------------CCTCTGGAT--------------------CTCTCC---TCTCCTT--------------------------------AATGCTG-------------TTTTTAATT-------------TTCAGAGAGAGTAATA----------------------CTTCAGTTCTTATAAG-----TAGATAGAAACAGAAATGGTTGTTAACTTTATTTTAGGAATGTAAAATGTAGATTTAATCAAGTTAGCAAAAGATGTGGAAGGTAACGTAGGATGAGTTTACTTGGTCTTT--GGATTTTTGAAAATGG-TTATAAC---------------TT-TTTTGTCTTCT
i canFam3.chr30             I 8 C 0

a score=536423.000000
s hg38.chr15_KI270850v1_alt    196527 206 +    430880 TCCTGATAGAGTGAACATTTA--CATGATTTTTATCTTCTGGCAAAAAGCTTGAGCAATAT-TGCTTGATAA-GTAAATAAGAGTAATACATTTCATTAT--ACAGAGAATGATTGCCAAGTTGATTTTTGTGA-TTTTTC-CCCCCAGTTTTGAAAGCAACATAATCAACTCTTATTGTGGAGGTAGTTATGTTATTACTTTAAAAATATATA
s panTro4.chr15              17719575 206 -  99548318 TCCTGATAGAGTGAATATTTG--CATGATTTTTATCTTCTGGCAAAAAGCTTGAGCAATAT-TGCTTGATAA-TTTAATACAAATAATACATTTCAATAT--ACAGAGAATGATTGCCAAGTTGATTTT-GTGA-TTTTTTTCCCCCAGTTTTGAAAGCAACATAATCAACTCTTATTGTGGAGGTAGTTATGTTATTACTTTTAAAATATATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10058394 206 +  10928107 TCCTGATAGAGTGAATATTTA--CATGATTTTTATCTTCTGGCAAAAAGCTTGAGCAATAT-TGCTTGATAA-GTAAATAAGAGTAATACATTTCATTAT--ACAGAGAATGATTGCCAAGTTGATTTTTATGA-TTTTTC-CCCCCAGTTTTGAAAGTGACATAATCAACTCTTATTGTGGAGGTAGTTATGTTATTACTTTTAAAATATATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102150675 205 + 121039945 TCCTGATAGAGTGAACATTTA--CATGATTTTTATCTTCTGGCAAAAAGCTCGAGCAATAT-TGCTTGGTAA-GGAAATAAGAGTAATACATTTCATTAT--ACAGAGAATGATTGCCAAGTTGATTTTTGTGA-TTTTT--CCTCCAGTTTTGAAAGCAACATAATCAACTCTTATTGTGGAGGTAGTTATGTTATTACTTTAAAAATATATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108530032 206 - 170124641 TCCTGATAGAGCGAACATTTA--CATGATTTTTATCTTCTGGCAAAAAGCTTGAACAATAT-TGCCTGGTAA-GTAAATAAGAGTAATACATTTCATTAT--ACAGAGAATGATTGCCAAGTTGATTTTTGTGA-TTTTTC-CCCCCAGTTTTGAAAGCAACATAATCAACTCTTATTGTGGAGGTAGTTATGTTATTACTTTAAAAATATGCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107348729 205 - 171882078 TCCTGATAGAGTGAACATTTA--CATGATTTTTATCTTCTGGCAAAAAGCTCGAGCAATAT-GGCTTGATAA-GTAAATAAAAGTAATACATTTCATTAT--ACAGGGAATGATTGCCAAGTTGATTTTTGTGACTTTTTT-CCCCTAAGTTTGAAAGCAACAT--TCAACTCTTATTGTGGAGGTAGTTATGTTATTACTTTTGAAATATATA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              39828 205 +    130206 TCCTGATAGAGTGAACATTTA--CATGATTTTTATCTTGTGGCAAAAAGCTTGAGCAATAT-TGCTTGATGA-GTAAATAAGAGTAATATATTTCATTCT--ATGGAGAATGATTACCAAGTTGATTTTTGTGA--TTTTC-TCCCCAGTTTTGAAAGCAACATAATGAACTCTTATTGTGGAGGTAGTTatgttattacttttaaaatatata
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21068393 207 -  24206276 TCCTGATAGAGTGAACATTTA--TATGATTTTTATCTTCTGGCAAAAAGCTCGAGCAATAT-GGCTTGATAA-GTAAATAAAAGTAATACATTTCATTAT--ACAGGGAATGATTGCCAAGTTGATTCTTGTGATTTTTTT-CCCCCAAGTTTGAAAGCAACATAATCAACTCTTATTGTGGAGGTAGTTATGTTATTACTTTTGAAATATATA
i chlSab2.chr29             C 0 C 0
s mm10.chr9                  55183927 179 + 124595110 TTCTGATAAAGATATAA--TA--TATGATTTTTATTTTCTGGC-AAAAGCATGAGTAGTAC-TACTTTTAAA----AGTAAGATTAATATATTTTGTTGT--ACAAGGAAAACTTGCTGGATTTATTTTCATAG-TTTTCT-T-----ATTTTGAAA----------CAGAACTTACAATAGAGGTGG------TATTCTTTTTAAAATTGGTA
i mm10.chr9                 I 396 C 0
s canFam3.chr30                 55106 189 -  40214260 TGCTGATGGGG-----ATTAACTCATGATTTTTAGCTTCTGGGAAAGA-TATAAGTGATATCTGCTTTAGAAGGTAATTAAGATACATATATTATTGTATGAACAAAGAACTGTTGCTGAGTTGATTTT-------------TCCCCTTTTTTAAAA--AAAATAATCAGCTTTTATTGT----GTATTTATGATATAACTTTAAAAATAGGTG
i canFam3.chr30             C 0 C 0

a score=11524.000000
s hg38.chr15_KI270850v1_alt    196733 3 +    430880 ggt
s panTro4.chr15              17719781 3 -  99548318 ggt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10058600 3 +  10928107 ggt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102150880 3 + 121039945 ggt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108530238 3 - 170124641 ggt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107348934 3 - 171882078 GAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              40033 3 +    130206 agt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21068600 3 -  24206276 GAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18018078 3 + 132174527 ggt
i calJac3.chr10             N 0 C 0
s mm10.chr9                  55184106 3 + 124595110 GAT
i mm10.chr9                 C 0 I 1162
s canFam3.chr30                 55295 3 -  40214260 GGT
i canFam3.chr30             C 0 C 0

a score=14619.000000
s hg38.chr15_KI270850v1_alt    196736 5 +    430880 ggagt
s panTro4.chr15              17719784 5 -  99548318 ggagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10058603 5 +  10928107 ggagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102150883 5 + 121039945 ggagt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108530241 5 - 170124641 ggagt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107348937 5 - 171882078 AGAAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              40036 5 +    130206 ggagt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21068603 5 -  24206276 AGAAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18018081 5 + 132174527 ggagt
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 55298 5 -  40214260 TAAGT
i canFam3.chr30             C 0 I 1479
e mm10.chr9                  55184109 1162 + 124595110 I

a score=420066.000000
s hg38.chr15_KI270850v1_alt    196741 187 +    430880 acacctgttgtcctagctactagaggtggtgggaagctgaggcaggaagatcttttgagcttggggaagtcaaggctgcagtgagctgtgattgcaccattatattccagcctgggtgacagagtgaga---caccctgtatcataaaa--c------aaaaaCAAGGGGGAGTGGAGGG-TGGGATACATATT---------GTATA
s panTro4.chr15              17719789 187 -  99548318 acacttatagtcccagctactag-ggtggtaggagactgaggcaggaagatcttttgagcttggaaaagtcaaggctgcaatgagccgtgattgcaccattatattccagcctgggtgacagagtgaga---caccctgtgtcataaaa--c------aaaaaaaaGGGAGAGTGGGAGG-TGGGATACATATT--------TATATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10058608 193 +  10928107 acacctgttgtcccagctactagaggtggtgtgaggctgaggcaggaagatcttttgagcttggggaagtcaaggctgcaatgagctgtgattgcaccattatattccagcctgggtgacagagtgaga---caccctgtatcataaaa--caaacaaaaaaaaaaCGGAGAGTTGGGGG-TGGGGTACATATT---------GTATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102150888 187 + 121039945 acacctgttgtcccagctactagaggtggtgggaggctgaggcaggaagatctttcgagcttggggaagtcaaggctgcaatgagctgtgattgcaccgttaaattccagcctgggtgacagagtgaga---caccctgtatcataaaa--c------aaaaaCAAGGGGGAGTGGAGGG-TGGGATACATATT---------GTATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108530246 183 - 170124641 acacctgtagtcccagctaccaggggtggtgggaggctgaggcaggaagatcttttgagcttggagaagtcaaggctacaaagagctgtgattgcaccattatattccagcctgggtgacagagtgaga---cagcctgtctctt------a------aaaaaaaaGGGGGTATTTGGGG-TAGGATTCATATT---------GGACA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107348942 192 - 171882078 Acacctgtagtcccagctatgaggggtggtgggaggctgaggcaggaagatcttttgagctaggagaagtcaaggctgcaatgaactgtgattgcactattatattccagcctgggtggcactattatattccag-ctgtctcataaaacaa------aaaaaaaaGAGGGGAGTAGGGGTTGGGATACATATT---------GGATA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              40041 187 +    130206 acacctgtagtcccagctaccaggggtggtgggaggctgaggcaggaagatctttTGAGTGtggagaagtcaaggctgcagtgagctgtgattgcaccatcattttccagcctgggtgacagagtgaga---caccctGCCTCATAAAA--C------AAAACTAAGGGGGAGTGAGGGG-TGGGATACATATT---------GGATA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21068608 190 -  24206276 Acacctgtagtcccagctatgaggggttgtgggaggctgaggtaggaagatcttttgagctaggagaagtcaaggctgcaatgaactgtgattgcaccatcatattccagcctgggtggcactattatattccag-ctgtctcataaaa--c------aaaaaaaagaGGGGAGTGGGGGTTGGGATACATATT---------GGATA
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18018086 180 + 132174527 acacctgtagccccagctactggggatggtgggaggctgaggcaggaagatcttgtgctct---ggaagtcaagaatgcggtgag-----------ccactatatttcagcctgggtgacgtagcgaga---caccacatctcttaaaa--a------aaaaaaaaGTTGCGG--GGAGG-TGGGATTCAAATTGGCCAAATTGGATC
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55184109 1162 + 124595110 I
e canFam3.chr30                 55303 1479 -  40214260 I

a score=4095.000000
s hg38.chr15_KI270850v1_alt    196928 1 +    430880 T
s panTro4.chr15              17719976 1 -  99548318 T
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10058801 1 +  10928107 T
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102151075 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108530429 1 - 170124641 T
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107349134 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              40228 1 +    130206 T
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21068798 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18018266 1 + 132174527 T
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 56782 1 -  40214260 T
i canFam3.chr30             I 1479 C 0
e mm10.chr9                  55184109 1162 + 124595110 I

a score=162573.000000
s hg38.chr15_KI270850v1_alt    196929 48 +    430880 GTATATATAGGACAGTTGTAGAAAAATACCGA----TTTTTTAGTGATTTAA
s panTro4.chr15              17719977 48 -  99548318 GTATATATAGGACAGTTGTAGAAAAATACCAA----TTTTTTGGTGATTTAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10058802 48 +  10928107 GTATATATAGGACAGTTGTAGAAAAATACTGA----TTTTTTAGTGATTTAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102151076 48 + 121039945 GTATATATAGGACAGTTGTAGAAAAATACCGA----ATTTTTAGTGATTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108530430 48 - 170124641 GTATATATAGGACAGTTGTAGAAAAATATCAA----TTTTTTAGTGATTTAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107349135 48 - 171882078 GTATATATAGGACAGTTGTAGAAAAATACTGA----TTCTTTAGTGATTTAA
i macFas5.chr7              C 0 I 307
s papAnu2.JH685126              40229 48 +    130206 GTGTATATAGGACAGGTGTCGAAACATGCTGA----TTTTTTAGTGATTTAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21068799 48 -  24206276 GTATATATAGGACAGTTGTAGAAAAATACCGA----TTCTTTAGTGATTTAA
i chlSab2.chr29             C 0 I 308
s calJac3.chr10              18018267 49 + 132174527 GTATACATAAGACAGTTGTAGACAAATACAGA---TTTTTTTAGTGATTTAA
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55185271 45 + 124595110 GTACATATAGAAGAATTATAGAAAAA--ATGT----TTTTATAGTGATTTA-
i mm10.chr9                 I 1162 C 0
s canFam3.chr30                 56783 51 -  40214260 GCATATGTAGAACAGTTGTAGACAGATTTTTAGATTTTTGTTAATGATTTC-
i canFam3.chr30             C 0 C 0

a score=1863191.000000
s hg38.chr15_KI270850v1_alt    196977 591 +    430880 CTTTT--GACGGTTCCGTCCATGGCAAA-------TTTTTCTCCTTGAACACCTTGGCTAATAATACAAGTTTAGGAAAGCA---TATTAAAC---TGTGTTTGAATTCTTGAGAAAATTATATACATATGACTGTTTTCCTTTAGAATGACTCCAAACTCTGAACCCCC-TTATTAGATTAGA-TTT-AGGGTATTGTGATCCCTTTGGGACATTTATTCTAAAGGAGCTGGAAA--CTATAGTGG-------CCTCTATTTTTCCTGGGG--ATATAGAGCAGCTTAAGATCTCCTCTTTCTGGAACTT-ATCCTAGGTGCTCTATTTTAGCTTTCAGATTGGTTCATTTTTG-AG-TTAGTtaaaataata---ataataataataatCTTTTTGTTTGAATTGT-TTTTTGTTTTGGAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTTAGATCTTAAAA-----AGAAGCGATAGGAGACATTTTG-----CTTA-----TCTTTCAAGGTAAGAAAATGGTTATGAGactctatatccttctaatgggggtgtgtatttg-tacaagtgttttggaaaacggt----------ttggga------aagtggaagat-------------------------------------------------------------actcaca-------------ccct-------------------------------------------atggttcaggaatc
s panTro4.chr15              17720025 601 -  99548318 CTTTTTTGACAGCTCTGTCCATGGCAAA-------TTTTTCTCCTTGAACAACTCGGCTAGTAATACAAGTTTAGGAAAGCA---TATTAAAC---TTTTTTTGAATTCTTGAGAAAATTATATACATGCGACTGTTTTCCTTTAGAATGACTGCAAACTCTGAACCCCC-TTATTAGATTAGA-TTT-AGGCTATTATAATCTCTTTGGGACATTTATTCTAAAGGAGCTGGAAG--CTATAGTGG-------CCTCTAGTTTTCCTGGGG--ATATAAAGCAGCTTAAGGTCTCCTCTTTCCGGAAATT-ACCCTAGGTGCTGTATTTTAGCTTTCAGATTGGTTCATTTTTG-AG-TTAGtaaaattaatacaaataataataataatCTTTTTGTTTGAATTGT-TTTTTGTTTTGGAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGAGATAGGAGACATTTTG-----CTTA-----TGTTTTAAGGTAAGAAAATTTTTATGAGactctatatcctatgaatgggggtatatatttg-tacaagtgttttggaaaacagt----------ttggta------aagtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaatc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10058850 588 +  10928107 CTTTT--GACAGTTCCGTCCATGGCAAA-------TTTTTCTCCTTGAACACCTTGGCTAGTAATACAAGCTTAGGAAAGCA---TATGAAAC---TGTGTTTGAATTCCTGAGAAAATTATATACATGTGACTGTTTTCCTTTAGAATGACTCCAAATTCTGAACCCCCTTTATTAGATTAGA-TTT-AGGGTATTATAATCTCTTTGGGACATTTATTGTAAAGGAGCTGGAAG--CTATAGTGG-------CCTCTAGTTTTCCTGGGG--ATACA-AGCAGCTTAAGATCTCCTCTTTCTGGAACTT-ACCCTAGGTGCCCTATTTTAGCTTTCAGATGGGTTCATTTTTG-AG-TTAGTCAAA---------ATAATAATAATAATCTTTTTGTTTGAATTTT-TGTTTGTTTTGTAATTCTCAAGGTTGACCCTGATAGTCCTATGCACAGTGATCTCCAGATCTTAAAAGAAA-ACAAGGGATAGGAGACATTTTG-----CTAA-----TCTTTTAAGGTAAGAAAATTGTTATGAGactctatatccttctaatgggggtgtatatttg-tacaagtgttttggaaaacagt----------ttggta------aagtggaagat-------------------------------------------------------------actaaca-------------ccct-------------------------------------------atgG-TCAGGAATC
i ponAbe2.chr15_random      C 0 M 770
s nomLeu3.chr6              102151124 594 + 121039945 CTTTT--GACGGTTCCGTCCATGGCAAA-------TTTTTCTCCTTGAACACCTTGGCTAATAATACAAGTTTAAGAAAGCA---TATTAAAC---TTTGTTTGAATTCTTGAGAAAATTATATACATATGACTGTTTTCCTTAAGAATGACTGCAAACTCTGAACCCCC-TTATTAGATTAGA-TTT-AGGGTATTATGATCCCTTTGGGACATTTATTCTAAAGGAGCTGGAAG--CTATAGTGG-------CCTCTATTTTTCCTGGGG--ATATAGAGCAGCTTAAGATCTCCTCTTTCTGGAACTT-ATCCTAGGTGCTCTATTTTAGCTTTCAGATTGGTTCATTTTTG-AG-TTAGTTAAAatcatcatcatcatcatcatcatcTTTTTGTTTGAATTGT-TTTTTGTTTTGTAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTTAGATATTAAAA-----AGAAGGGAGAGGAGACATTTTG-----CTTA-----TCTTTTAAGGTAAGAAAATTGTTATGAGactctatatccttctagtgggggtgtatatttg-tacaagtgttttggaaaatagt----------ttggta------aagtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atgcttcaggaatc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108530478 597 - 170124641 CTTTT--GATAGTTCCGTCCATGGCAAATGTTTACTTTTTCTCCTTGAACATCTTGGCTTATAATACAAGTTTAGGAAAGCA---TAGTAAAC---TTTTTTTGAATTCTTGAGAACATTATATACATGTGACTATTTTCCTTTAGAATGACTGCGAACTCTGAACCCCC-TTATTAGATTAGA-TTT-AGGCTATTATGATCTCTTTGGGACATTTATTCTAAAGGAGCTCGAAG--CTATAATGG-------CCTCTATTTTTCCTGGGG--ATATACAGCAGCTTAAGATCTTCTCTTTCTGGAACTT-ACCCTAGGTGCTCTATTTTAACTTTCAGATTGGTTCATTTTTG-AG-TTAGTAAA------------AATAAAAAATCTCTTTGTATTTGAATTATATTTTTGTTTTGTAATTCTTAGGGTTGACCCTGACAGTGCTTTGCACAGTGATCTTCAGATTGTAAAAGAAAAAGAAGGGATAGGAGACATTTTGCTCAACTTA-----TCTTTTAAGGTAAG-AAATTGTTATgggactctatatcctcctaatggaggtgtatatttg-tacaagtg-tttggaaaacaac----------ttggta------aag-ggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcagtaatc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107349490 584 - 171882078 CTTTT--GACAGTTCTGTCCATGGCAAA-------TTTTTCTCCTTAAACACACTGGCTAATAACACAAGTTTAGGAAAGCA---TAGCAAAC---TTTTTTTGAATTCTTGAGAACATTATATACATGTGACTTTTTTCCTTTAGAATGACTACAAACTCTGAACCCCC-TTATTAGATTAGA-TTT-AGGCTATTATGATCTCTTTGGGATACTTATCCTAAAGGAGCTGGAAG--CTATAGTGG-------CCTCTATTCTTCCTGGGG--ATATAGAGAAGCTTAAGATCTCCTCTTTCTGGAACTT-ACCCTGGGTGCTCTATTTTAGCTTTCAGATTGGTTCATTTTTG-AC-TTAGTAAA------------AATAATAATAATCTTTTTATTTGAATTGTTTTTTTGTTTTGTAATTCTCAAGGTTGACCCTGATAGT-CCTTGCACAGTGATCTTCAGATCTTAAAAGAAAAACAAGGGATAGGAGACATTTTG-----CTTA-----TCTTTTAAGGTAAGAAAATTGTTGTGAGactctatatccttctaatg--ggtgtatatttg-tacaagtg-tttggaaaacagt----------ttggta------aagtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaatc
i macFas5.chr7              I 307 C 0
s papAnu2.JH685126              40277 590 +    130206 CTTTT--GATGGTTCTGTCCATGGCAAA-------TTTTCCTCCTTGAACAGCGTGGCTAGTAATACAAGTTTAGGAAAgca---tattaaac---tttttttgaatTCTTGAGAGAATTATATACATGTGACTGTTTTCCTTTAGAATGACTGCAAACTCTGAACCCCC-TTGTTAGATTAGA-CTT-AGGCTA-TATGATCTCTTTGGGACTTTTATTCTACAGGAGCTGGAAG--CTATAGTGG-------CCTCCATTTTTCCCGGGG--ATATAGAGCAAATTAAGATCTCCTCTTTCTGGAACCT-ACCCTAGGTGCTCTATTTTAGCTTTCAGATTGGTTCATTTTTG-AG-Ttagtacaa---------ataataataataatctttctgtttgaattgtttttttgttttgtacatCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCagatcttaaaagaaaaacaagggatAGGagacattttt-----ctta-----tcttttaaggTAAGAAAATTGTTATGAGACTCTATATCCTTCTAATGGAGGTGTATATTTG-TACAAgtgttttggaaaacagt----------ttggta------aagTGAAAGAT-------------------------------------------------------------ACTCATA-------------CCCT-------------------------------------------ATGGTTCAGGAATC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21069155 587 -  24206276 CTTTT--GACAGTTCTGTCCATGGCAAA-------TTTTTCTCCTTAAACACACTGGCTAATAACACAAGTTTAGGAAAACA---TAGCAAACTTTTTTTTTTGAATTCTTGAGAAAATTATATACATGTGACTGTTTTCCTTTAGAATGACTACAAACTCTGAACCCCC-TTATTAGATTAGA-TTT-AGGCTACTATGATCTTTTTGGGACACTTATCCTAAAGGAGCTGGAAG--CTATAGCGG-------CCTCTATTCTTCCTGGGG--ATATAGAGCAGCTGAAGATCTCCTCTTTCTGGAACTT-ACCCTGGGTGCTCTATTTTAGCTTTCAGATTGGTTCATTTTTG-AC-TTAGTAAA------------AATAATAATAATCTTTTTGTTTGAATTGTTTTTTTGTTTTGTAATTCTCAAGGTTGACCCTGATAGTCCCTTGCACAGTGATCTTCAGA-CTTAAAAGAAAAAGAAGGGATAGGAGACATTTTG-----CTTA-----TCTTTTAAGGTAAGAAAATTGTTATGAGactctatatccttctaatg--ggtgtatatttc-tacaagtg-tttggaaaacagt----------ttggta------aagtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaatc
i chlSab2.chr29             I 308 C 0
s calJac3.chr10              18018316 587 + 132174527 CTTTT--CATAGTTCCATCCATGGCAAA-------TTTTCCTTTTTGAAACCCTTGGCTAACAATACAAGTTTAGGAAAGCA---TATTAAAC---TTTTTTTGAGTTCTTGAGAAAATTATATACAGGTGAC--TTTTCTTTTAGAGCGACTACAAACTCTAAAACCCC-TTACTAGATTAGATTTT-AGAGTATTATGGTCTATTTTGGACATTTATTCCCAAGGAGCTGGGAG--CTATAGTGA-------CCTCTATTTTTCCTGGTG--ATATAGAGCACCTTTAGA-CTTCTCTTTCTGGAACTTAATCCTAGGTACTCTATTTTAGCTGTCAGACTAGTTCATTTCTG-AGTTTAGTTAA-------------AAAATCTCTAACTTTTAATTTGAACTGT-TTTTTGTTTCATAATTCTTAGGGTCGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCCTAAAAGAAAAAGAAGGCATAGAATATATATTG-----CTTAACTTCTCTTTTAAGGTAAGAGAA----TACAgaacaccatatacttccaatgggggcatatactta-tacaagggctttggaaaacaat----------ttggtg------aaatagaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------gtggttcagaagta
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55185316 683 + 124595110 CTTTT--GGTGGTATTATTGGCGGTAAA-------TTTCTTTTCTTAAACTTCTTGGTTAAAAATATAATTTTAGGAAAGGAAAGCATCAAAA---TGTTTTTCAGTTGTTTGAAAAGTTATGTGTATCTAACTGTTGTTCTTTGGAATGACCATTAA-------------TT------TCAGA-TTT------------------------CCTTTGTTCCCAAGGAGCTAGAGAGCCCATAGTGACACCCCCCACCCACCCCACCCCGGA--CTGTGGCACACTTTAGAA---CTTCTGTTTAGAACTT-ACCTTGGAGGCTCTGTTGCCCCTTTTGGACTGGTTCAGTTGGA-GC-TTAGTAAG------------AAAGGTTTCTCTAATCTTGTTTGAACTGG-CTTTTGTTTTGTTATTCTTAGGGTTGACTCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTG-----CTTAACTTCTCTTTTAAGGTAAGAATATTGTAATGGGATTC-ATGTCCTTCTAATGGGAGTATGTAAGTGACTCAGCTGCCTTGGAGAACAAT----------TTGGTAGGATTTGAGTTCAGGATTTTTTTTTTTTTCCTTTCCTTttctttttttttgagacaggatttcattgtgtagtctcagactcacagatctgcctacttccctccaactcccaagtgttggaattaaatgttgatactgagtttggctAGTTAAGGAGTT
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 56834 580 -  40214260 CTTTT--TCTGGTCCTGTCCGTGATAAA-------TTTCGCTCCTTGAGCCCCTTGGCTTATAATACAGTTTTAGAAGAGCA---AAATA------ATTTTTTGAGTTCTGGAGAAAATT---TATGTACTATGATTTTCCTTTAGAATGACTGCTAACTTTGAATCCCC-TCATGGGCATGGA-TTTAAAAATACAGTGATCTTCTT-GGACATTGAATCCCAAGGAGTCAGAGG--CTATTGTGA---------TTTATTTTTCCAGGGACCATATACAGCAGTTTTA---------TGTTTGAAACTT-ACCC-AGGGGCTCTGTT--AGCTCTTGAACTGGTTCATTTTTGTGG-TTAGTAAGA-----------AACCTCTCTTGGTTTTTCATTTGAATTGC-------TTTTGTGATTCCTAGGGTTGATCCTGACAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTG-----CTTAATTTCTCTTTTAAGGTAAGAAAATGTTAAggagactccatatgcttctaatgggaatgtatatttt-tagaattgctttggaaaacaatttgatattacttggta------aagtagaaggt-------------------------------------------------------------attcatt-------------ccct-------------------------------------------gtggttcaggaatt
i canFam3.chr30             C 0 C 0

a score=1027423.000000
s hg38.chr15_KI270850v1_alt    197568 386 +    430880 tcgtggatatatactccacaagaaatgagtacataggtg--ccaggag--ac----acaggaatgttcagagcagcatcgtttataatagccccaaacagaaaataacccaa--atgttcattccaataaaatggagaattgtggtattc--ataaaatggcttacagtcatgtgggacaagat-gagcgaatcttgaacactatgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctatatagagttcaaaaataggcaaaacta----atGTTGGTTAGGGcatacattcttagcggaggcaatatcgcctgcagtggagtgaaaattggtccttagagtgaaagaaaatctgacctattatactggtctgctgccctccaaa
s panTro4.chr15              17720626 386 -  99548318 tcgtggatatatactccacaagaaatgagtacatatgtg--ccaggag--ac----acaggaatgttcagagcagcatcgtttataataaccccaaacagaaaataacccaa--atgttcattccaataaaatggagaattgtggtattc--ataaaatggcttacagtcatgtgggacaagat-gagcgaatcttgaacactatgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctatatagagttcaaaaataggcaaaacta----atgttggttagggcatacattcttagcggaggcaatatcgcctgcagtggagtgaaaattggtcctcagagtgaaagaaaatttgacctattataatggtctgctgccctccaaa
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102151718 386 + 121039945 tcgcggatatatactccacaagaaatgagtacataggtg--acaggag--ac----acaggaatgttcagagcagcatcgtttataatagctccaaacagaaaataacccaa--atgttcattccaataaaatggagaattgtggtattc--ataaaatggcatacagccatgtgggacaagat-gggcaagtcttgaacactatgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctgtgtagagttcaaaaataggcaaaacta----atgttggttagggcatacattcttagtggaggcaatatcgcctgcagtggagtgaaaattggtccttagagtgaaagaaaatctgacctattataatggtctgctgccctccaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108531075 381 - 170124641 tcgtggatatatactccacaagaaataagtacgtaagca--ttaggag--ac----acaggaatcttcaga-cagtatcatttataatagccccaaacagaaaataacccaa--atgttcattccaataaaatggagaattatggtattc--atagaatggcttacagctatgtgggataagat-gggcgaatcttgaacactacgt---ttaacaaaagagaccagacccccaaaacct------aatttgtacaatttcctctatatagagttcaaaaataggcaaa--------atgttggttagggcatacattcttagtagaggaaatattgcctgcagtggagtgaaaactggcccttagagtgaaagaaaatcttacctattataatggtctgctgccctccaaa
i rheMac3.chr7              C 0 I 269
s macFas5.chr7              107350074 385 - 171882078 tcgtggatatatactccacaag-aacgagtacgtaggtg--ccgggag--ac----acaggaatgttcagagcagcattgtttgtaatagccacaaacagaaaataacccaa--acgttcattccagtaaaatggagaattgtggtattc--ataaaatggcttacagctatgtgggacgagat-gggcgaatcttgaacattatat---taagcaaaagagaccagacccccaaaacgt------attttgtacaattccctctatatagagttcaaaaataggcaaaactc----atgttggttagggcacacattcttagtggaggcaatatcgcctgcagtggagtgaaaattggtcctgagagtgaaagaaaatcttacctattaccatggtctgctgccccccaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              40867 386 +    130206 TTGTGGATATATACTCCACAAGAAATGAGTACATAGGTG--CCAGGAG--AC----ACAGGAATGTTCAGAGCAGCATCATTTATAATAACCCCAAACAGAGAAGAACCCAA--ATGTTCATTCCAATAAACTGGAGAATTGTGGAATTC--ATAATATGGCTTACAACTCTGTGGGATGAGAT-GGGCAGGTCTTGAACACTGTGT---TCTGCAAAAGAGACCAGACCCTCAAAACTT------ATTTTGTACAATTTCCTCTATATAGAGTTCAACAATAGGCAAAAGTA----ATGTTGGTTAGGGCATACATTCTTAGTGGAGGCAATGTCGCCTGCAGTGGAGTGAAAATCAGTCCTTAGAGTAAAAGAAAGTCTTACCTATTGTAATGGTCTGCTGCCCTCCAAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21069742 385 -  24206276 tcatggatatatactccacaag-aacgagtacgtaggtg--ccgggag--ac----acaggaatgttcagagcagcattgtttataataaccccaaacagaaaataacccaa--atgttcattccagtaaaatggagaattgtggtattc--ataaaatggcttacagctatgtgggatgagat-gggcgaatcttgaacattatat---taagcaaaagagaccagacccccaaaacct------attttgtacaattccctctatatagagttcaaaaataggcaaaactc----atgttggttagggcatacattcttagtggaggcaatatcgcctgcagtggagtgaaaattggtccttagagtggaagaaaatcttacctattatcatggtctgctgccctccaaa
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18018903 363 + 132174527 ttgtagacatactcttcgtaagacatgaatacttaagtgtaccaggag--ac----acaggaatgttcagagcagcatcatttataatagccccagacagaaagtaactcag--gtgttcatttcaataaa--------------------------atggtttacagccatgtaggacaagatggggtggatcttaaacacgatga---taagcaaaagagactacactc-caaaacct------aacttatacgattccctttatatagagttcaaaaacaggtaaaacaa----acgttggttagggcatacattcttagtagaggcaatgtcacctgcagtggagtgaaaattgatctttagagtgaaa-acaatcttagctattataatggtctgctgccctccaaa
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55186000 352 + 124595110 TTGagg-tgtatactccacaaaagatgaatgcttagaca--cctggaaacac----acaagaatgtgtagagaagcatggtttgtcataaccacaacc--aaaacaatccaG---------TTATAGTAAATTGGAGAA-TGTGGCATCC--ATAAGAGATATT------------GACAAGAT-AGGTCAGTCTTCTATATAGTATATATAAGTAGAAGAAATTAGACTT---AGACTTTTAGCCATTTTGTGTAGTTCCATTTATATAGAATTCAAAAAT-TGTAAAATTA----GTTTTGTATAGGGCATGCGTTTTGAGTGCAGGCA----------------AGGGAAATTTGGTCCTGTAAATGAA--ACATTCTTAGGTGTTTTAATGGTCTTTAGCCACAAAAA
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 57414 398 -  40214260 ctcagagtgtatactgtgctggaaatgagtacttaggtaccccaagag--acccatacaacactgttcagagcagtgttgtttataataattccaaacagaaaataacccaagtgtgtctgttacagtagaatggaaaactgtgatattcatataaaaggaaatagagctatatgcagaaaggt-gcgtgaatcttaaacacagtgg---tgagcaaaagaaaccagatcc-caaagcat------gttttgtacaatttcatgtatatagagctcaaaaataggtaaaactaaattatattgttcagggcatgcattctcaatagagacaatatccccaccattggggtgaaaactggcctgtggagtgaaa-aaaatcttagatattataatagttggtggccttataag
i canFam3.chr30             C 0 C 0
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=146278.000000
s hg38.chr15_KI270850v1_alt    197954 116 +    430880 cggccatagaac-----------ataaa--------------------------------------------------------------------------------------------------------------------------TGAAAAG-----------------AAAA--CTGAGAAACACttctttatgggttcatacttgggcagtaaaactatcaagaaa---aaagaggtgatta-gacacagggtagagtaaggagt
s panTro4.chr15              17721012 111 -  99548318 cagccatagaac-----------ataaa-------------------------------------------------------------------------------------------------------------------------------AG-----------------AAAA--CTGAGGAACACttctttatgggttcatacttgggcagtaaaactatcaagaaa---aaagaggcgatta-cacacagggtagggtaaggagt
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102152104 114 + 121039945 cggccatagaac-----------ataaa--------------------------------------------------------------------------------------------------------------------------TGAAAAG-----------------AAAA--CTGAGAAACACttctttatggattcatacttgggcagtaaaactgtcaagaaa---aaagaggtgatta-cacac--ggtagggtaaggagt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107350459 116 - 171882078 gggccatagaac-----------ataaa--------------------------------------------------------------------------------------------------------------------------TGAAAAG-----------------AGAA--CTGAGAAACACttatttatggattcatacttgggcagtaaaactgtcaagaaa---aaagaggtgatta-cacacagagtacgttaaggagt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41253 116 +    130206 GAGCCATAgaac-----------ataaa--------------------------------------------------------------------------------------------------------------------------tgaaaag-----------------aaaa--ctgagaaacacTTATTTATGGATTCATAGTTGGGCAGTAAAACTATCAATAAA---AAAGAGGTGATTA-CACACAGGGTAGGGTAAGGAGT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21070127 116 -  24206276 gggccatagaac-----------ataaa--------------------------------------------------------------------------------------------------------------------------TGAAAAG-----------------AGAA--CTGAGAAACACttatttatggattcatacttgggcagtaaaactgtcaagaaa---aaagaggtgatta-cacacagagtacgttaaggagt
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18019266 211 + 132174527 gggctacataac-----------ataaaaagatatacaatctatctg----------------------tggtgttaaaa---tttcatggagcagggggaataaaattagaaagaaaacttctaaaaagcctttttgggggggcaaaaatgaaaag-----------------aaaa--ctgagaaacacttatttatggattcatactagggtagtaaaactaccaagaac---aaagaggtgatta-catacaggttaggataagga--
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55186352 124 + 124595110 CTTCTCTTGTAC-----------TAAAA--------------------------------------------------------------------------------------------------------------------------TTCAATGGGGCCGGGAACCCTGCTAAAA--CTAGAAAAAAC--ATTTCTAGGTAGACTTTTTAGGTACGAAACAGT-GAGAAA---AGAAAGCTCA-------AAAGCATGAAGTCAGTGTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57812 194 -  40214260 gggacacaatacaatacaatacaataaa---caacacagtatatctgtgttgggggatagaataaaatttttttctaaaaagccttagtggagc--------------------------------------------------------aaaaatg-----------------aaaagcctgagaaacacagatttatggattcaaacttgggtagtt--actttcaaggaaagcaaagatgtgattaccatacagttgaggatagggagt
i canFam3.chr30             C 0 C 0
e rheMac3.chr7              108531456 269 - 170124641 I
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=396041.000000
s hg38.chr15_KI270850v1_alt    198070 177 +    430880 ccatc---------------taggtgggaggtag----------ggaggtgtga---------------actgaa-----aggtacatctgtgggcttcttggatactggctgtaatatatttctggacca-ggttggtggttacatgggcaaataatttaaaataacttgttaaggtctaccttaaggtatcttttgtgtacttttctga----atgtgttatatt
s panTro4.chr15              17721123 177 -  99548318 ccatc---------------taggtggaaggtag----------ggaggtgtga---------------actgaa-----aggtacatctgtgggcttcttggatactggctgtaatatatttctggacca-ggttggtggttacatgggcaaataatttagaataacttgttaaggcctaccttaaggtatactttgtgtacttttctga----atgtgttatatt
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102152218 177 + 121039945 ccatc---------------tagctgggaggtag----------ggaggtgtga---------------gctgaa-----aggtacatctgtgggcttcttggatactggctgtaatatatttctggacca-ggttggtggttacatgggcaaataatttagaataacttgttaaggtctaccttaagatatattttgtgtacttttctga----atgtgttatatt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108531725 178 - 170124641 ccatc---------------gaggtgggaggtag----------ggaggtgtga---------------actgaa-----aggtacaactgtgggcttcttggataccggctgtaatatatttcgggacca-ggttggtgggtatttgggctaataatttacaataac---ttaagctataccttaaggtatattttatgtacttttctgaatgtatgtgttatatt
i rheMac3.chr7              I 269 C 0
s macFas5.chr7              107350575 191 - 171882078 ccatcttagggaggactcctaaggtgggaggtag----------ggaggtgtga---------------actgaa-----aggtacgtctgtgggcttcttggatcctggctctaatatctttctgaagca-ggctggtggttaaatgggcaaataatttagaataacttgttaaggtctaccttaaagtatattttgtgtacttttctga----atgtgttata-t
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41369 178 +    130206 CCATC---------------TAGGTGGGAGGTAG----------AGAGGTGTGA---------------ACTGAA-----AGGTACATCTGTGGGCTTCTTGGATACTGGCTGTAATATATTTCTGGACCAGGGTTGGTGGTTACATGgacaaataatttagaataacTAGTTAAGGTCTACTTTAAGGTattttttgtgtacttttctga----atgtgttatatt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21070243 177 -  24206276 ccatc---------------taggtgggaggtag----------ggaggtgtga---------------actgaa-----aggtacatctgtgggcttcttggatcctggctctaatatctttctggagca-ggctggtggttaaatgggcaaatagtttagaataacttgttaaggtctaccttaaagtatattttgtgtacttttctga----atgtgttatatt
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18019477 169 + 132174527 -----------------------gtgggaggtaa----------ggaggtatga---------------actgaa-----agatacatctgtgggcttcttagatactggctgtaatgtatttcttgacca-ggttggtggttacatgggcacataatttataataaattcttaaggtgtacctc----tgtattttatgtacttttctgtatttacgtgttatatt
i calJac3.chr10             C 0 I 299
s mm10.chr9                  55186476 158 + 124595110 ------------------CATACCTGGGCAACAGGACCAGAAGCGAAGGTGTGATCACCATAAAGAGTTACTGAGTAGACAGAGACATCTGTAGGCTTC-----------------------------------CTGTTAGTCACGTGGGTATCCTGTTTACAATAA-TTGCTAAAGTTTCCCT----GTATA-TTTATGTCCCTTTTGGA----AT------TACT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 58006 170 -  40214260 ---------------actacgaggtgagagggag----------ggagttatga---------------gctgaa-----aggaatatctggggatttcttggatactggctctggcctgttttct--cta-ggatgctgattacatggatgcatatttgataata---tataatggtgtacctt----tatatgttatgtactttt--gaatttataggttatatt
i canFam3.chr30             C 0 C 0
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=301308.000000
s hg38.chr15_KI270850v1_alt    198247 120 +    430880 taataaAGTACT--------------TTTAAGATACCAAAAATAAAGGTTACAAAAGAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGACAAGATGTAAT-GGCTTAAAATCTATG
s panTro4.chr15              17721300 115 -  99548318 taataaAGTACT--------------TTTAAGATACTAAAA-----GGTTACAAAAGAATAAGAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGATAAGATGTAAT-GTTTTAAAATCTATG
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102152395 121 + 121039945 taataaAGTACT--------------TTTAAGATAGCAAAAATAAAGGTTACAAAAGAATAACAATGGAATCTAGAAAAAAAAGTTAATGATCTAA--TATGGAATCTAGATAAGATGTAAT-GGTTTAAAATCTATG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108531903 134 - 170124641 taataaAGTATTTTTAAGATACTAAATTTAAGATACTAAAAATGAAGGTTACCAAAGAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGAAATCTAGATAAGATATAAT-GGTTTAAAATCTATG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107350766 115 - 171882078 tAATAAAGTATT--------------TTTAAGATACTAAAAATGAAGGTTACAAAACTATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCT-----AGATGTAAT-GGTTTAAAATCTATG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41547 120 +    130206 taataaattgtt--------------tttaagatactaaaaataaaagttacaaaagaataacaagaaaatctag-aaaaaatgttaatgatctAA--TATGGAATCTGGATAAGATGTAAT-GGTTTAAAATCTATG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21070420 120 -  24206276 taataaAGTATT--------------TTTAAGATACTAAAAATAAAGGTTACAAAACAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGATAAGATGTAAT-GGTTTAAAATCTATG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18019945 116 + 132174527 TAATAAAGTATT--------------TTTAAGATGCTAAAAATAATGGTT---AAAGAATAGCAGTGCAATCTAG-AAAAAATGTTAATGATTTAA--TATGG-ATCTGGATACAATGTAAT-GGTTTAAAATTTATG
i calJac3.chr10             I 299 C 0
s mm10.chr9                  55186634 115 + 124595110 -----TAGTAAT--------------TTGAAGCTGTTAAAAATAAAGGTTAAAAAAGAATAGCAATGGGCTCTAG-ATAAAATGTTAGTGATTTAATGTATATAATAT-GGTAAGATCTAAC-GATTGGACATCT-CA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 58176 106 -  40214260 -----taatatt--------------tttaatgtt-----aataaaGGTT---GAAAAATAGCAATGAAATTTAG-ATAAAATG-TAGTGATTTAA--TACGAAATATGGATAA-ATGTAGTCTATTTTAAATCTTTG
i canFam3.chr30             C 0 I 736
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=7441.000000
s hg38.chr15_KI270850v1_alt    198367 4 +    430880 GCTA
s panTro4.chr15              17721415 4 -  99548318 GCTA
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102152516 4 + 121039945 GCTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532037 4 - 170124641 GCTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107350881 4 - 171882078 GCTA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41667 4 +    130206 GTTT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21070540 4 -  24206276 GCTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18020061 4 + 132174527 GGTA
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55186749 4 + 124595110 ACTA
i mm10.chr9                 C 0 C 0
e canFam3.chr30                 58282 736 -  40214260 I
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=44060.000000
s hg38.chr15_KI270850v1_alt    198371 15 +    430880 TA-TGAAGTATTTTGA
s panTro4.chr15              17721419 15 -  99548318 TA-TGAAGTATTTTGA
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102152520 15 + 121039945 TA-TGAAGTATTTTGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532041 15 - 170124641 TA-GGAAGCATTTTCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107350885 15 - 171882078 TA-TGAAGTATTTTGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41671 15 +    130206 TA-TGAagtattttga
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21070544 15 -  24206276 TA-TGAAGTATTTTGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18020065 15 + 132174527 TA-TGAGATATTTTGA
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55186753 16 + 124595110 GATTGAGGTGCTTTGA
i mm10.chr9                 C 0 I 3974
s canFam3.chr30                 59018 15 -  40214260 TA-TGAAGGGTTTTGA
i canFam3.chr30             I 736 I 1
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=24381.000000
s hg38.chr15_KI270850v1_alt    198386 15 +    430880 TGAAAAAAACAAAGA
s panTro4.chr15              17721434 13 -  99548318 TGAAGCACACA--GA
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102152535 15 + 121039945 TGAAACACACAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532056 15 - 170124641 TGAAAAAAACAAAGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107350900 15 - 171882078 TGAAAAAAACAAAGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41686 15 +    130206 tgaaaaaaacAGAGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21070559 15 -  24206276 TGAAAAAAACAAAGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18020080  9 + 132174527 TGGAAAAAA------
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 59034 15 -  40214260 GGAAGAAAGCAAAGA
i canFam3.chr30             I 1 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=514469.000000
s hg38.chr15_KI270850v1_alt    198401 275 +    430880 CATAAAGGAATACTT-TGTTGTACTTACTCTAAGGATGGTAGTAGTTTTCTAAAAGCTT---ACTTAGCTTTTTCATGTGTATATTTTTCCTTGGGGATATATC-----TTATGATTGAACTTTCTTGAAATGACCCTAATGTTA-------GTATTTTCTCTCAATTTTGTTATCATAGAAACTGTTGTGGTTGTCAACtgggttgtcttccta--------aagta---------tgaatccagtata----ggctgaagttgctaatggctacttctttacggattcatatgggtgaacgaatgaagca
s panTro4.chr15              17721447 278 -  99548318 CATAAAAGAATACTT-TGTTGTACTT----TAAGGATGGTAGTAGTTTTCTAAAAGCTTCTTACTTAGCTTTTTCATGTGTGTATTTTTGCTTGGGGATATATC-----TTACGATTGAACTTTCTTGAAATGACCCTAATGTTA-------GTATTTTCTCTCAATTTTGTTATCATAGAAACCGTTGTGGTTGTCAACTGAGTTGTCTTCCTG--------AAGTA---------TGAATCCAGTATATATTGACTGAAGTTGCTAATGGCTACTTCTTTACGGATTCATATGGGTGAACGAATGAAGCA
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102152550 278 + 121039945 CATAAAGGAATACTT-TGTTGTACTT----TAAGGATGGTAGTAGTTTTCTAAAAGCTTCTTACTTAGCTTTTTCATGTGTCTATTTTTCCTTGGGGATGTATC-----TTATGATTGAACTTTCTTGAAATGACCCTAATGTTA-------GTATTTTCTCTCACTTTTGTTATCATAGAAACTGTTGTGGTTGTCAACTGGGTTCTCTTCCTA--------AAGTA---------TGAATCCAGTATATATTGACTGAAGTTGCTAATGGCTACTTCTTTACGGATTCATGTGGGTGAACGAATGAAACA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532071 281 - 170124641 CATAAAAGAATACTT-TGTTGTACTTACTCCAAGGATGATAGTAGTTTTCTAAAAGCTTCTTACTTAGCTTTTTTGTGTGTGTATTTTTGCTTGGGGATATATC-----TTATGATTGAACTTTCTTGAAATGACCCTAATGT-A-------GTATTTTCTATCACTTCTGTTATCATAGAAACTGTTGTGGTTGGCAACTGGATTGTCTTCCTA--------AAGTA---------TGAATCCGGTATATATTGATTGAAGTTGTTAATGGCTACTTCTTTACAGATTCATATGGGGGAATGAATGAAGCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107350915 282 - 171882078 CATAAAAGAATACTT-TGTTGTACTTACTCTAAGGATGGTAGTGGTTTTCTGAAAGCTTCTGACTTAGATTTTCTGTGTGTGTATTTTTGCTTGGGAATATGTC-----TTATGATTAAACTGTCTTGAAATGACCCTAATGTCA-------GTATTTTCTCTGACTTTTGTTAGCATAGAAACTGTTGTGGTTGTCAACTGGGTTGTCTTCCTA--------AAGTA---------TGAGTCTAGTATATATTGACTGAAGTTGCTAATGGTTACTTCTCTATGGATTCATATGGGTAAACGAATGAAGCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070574 282 -  24206276 CATAAAAGAATACTT-TGTTGTACTTACTCTAAGGATGGTAGTAGTTTTCTGAAAGCTTCTTACTTAGATTTTCTGTGTGTGTATTTTTGCTTGGGGATATGTC-----TTATGATTAAACTGTCTTGAAATGACCCTAATGTCA-------GTATTTTCTCTGACTTTTGTTAGCATAGAAACTGTTGTGGTTGTCAACTGGGTTGTCTTCCTA--------AAGTA---------TGAGTCTAGTATATATTGACTAAAGTTGCTAATGGTTACTTCTCTATGGATTCATATGGGTAAACGAATGAAGCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18020089 273 + 132174527 ----------TACTTCCTTTGTACTTGCAAAAACGATAGTAATAATTTTCTAAAAGCTTCTTACATAGTTCTTTTATGTGTATATTTTGGCTTGGGGATATATC-----TTATGATTGAACTTTCTTGAAATGACCCAAATTTCA-------GTATTACCTGTCACTATTGTTATCATAGAAACTGTTGTGGTTGTCAACTGGGTTGTCTTCCTA--------AAGTA---------TGAATCTGGTATATATTGATTGAAGTTGCTAATGGCTACATTTTTGCTAATTCATATGGGGAAACAAATGAAGCA
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 59049 293 -  40214260 CATGAAAGGGTACTT----TATACTTGCAAAAAAAAC-----TAATTTTCTGGAAGCAT---------CTTTTGCATGTATATATTTTTGTCTGGGGATATATCTTCATTTATGATTCAACTTTCTTCAATTTACCCAAATGTCAAATGTCTGTATTTTCCCTCAGTTTTGTTATTATAGAAACTCTTGTGGTTGTCAGTTGAGATGCTTTTCAACTGAGTATAGGTATTCCCAGAGTGAGTCTGGTATATATTTACTGAAGTTGCTAATGACTGCATTTTTATTGATTCGTAT-GTTGAAAAAATAAACCA
i canFam3.chr30             C 0 I 52
e mm10.chr9                  55186769 3974 + 124595110 I
e papAnu2.JH685126              41701   0 +    130206 C
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=-236.000000
s hg38.chr15_KI270850v1_alt    198676 2 +    430880 ct
s panTro4.chr15              17721725 2 -  99548318 CA
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102152828 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532352 2 - 170124641 CA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107351197 2 - 171882078 CG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070856 2 -  24206276 TG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18020362 2 + 132174527 CC
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e canFam3.chr30                 59342 52 -  40214260 I
e papAnu2.JH685126              41701 0 +    130206 C
e ponAbe2.chr15_random       10059438 770 +  10928107 M

a score=37108.000000
s hg38.chr15_KI270850v1_alt    198678 20 +    430880 cagGCCTACAACAAAAAAAA
s panTro4.chr15              17721727 20 -  99548318 TGGGCCTACAACAAAAAAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060214 20 +  10928107 CAGGCCTACAACAAAAACAA
i ponAbe2.chr15_random      M 770 C 0
s nomLeu3.chr6              102152830 20 + 121039945 CAGGCCTACAACAAAAAACA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532354 20 - 170124641 CAGGCCTACAACAAAAAACA
i rheMac3.chr7              C 0 I 62
s macFas5.chr7              107351199 20 - 171882078 CAGGCCTACAACAAAAAACA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070858 20 -  24206276 CAGGCCTACAACAAAAaaat
i chlSab2.chr29             C 0 I 1
s calJac3.chr10              18020364 19 + 132174527 CAGGCCAAAACCAAAAAAA-
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e canFam3.chr30                 59342 52 -  40214260 I
e papAnu2.JH685126              41701  0 +    130206 C

a score=27446.000000
s hg38.chr15_KI270850v1_alt    198698 31 +    430880 CACACACACACAAAAAACAGGAAGATACCAT
s panTro4.chr15              17721747 30 -  99548318 -ACACACACACACTAAACAGGAAGATACCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060234 28 +  10928107 ---ACACACACAAAGAACAGGAAGATATCAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102152850 30 + 121039945 CACACTCACA-AAAAAACAGGAAGATACCAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351219 28 - 171882078 GACATACACACAAAA---AGGAAGATATAAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070879 28 -  24206276 gacatacacacaaaa---aggaagatataat
i chlSab2.chr29             I 1 C 0
s calJac3.chr10              18020383 29 + 132174527 -CAAAACACA-AAAAACCAGGAAGGTATCTT
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e canFam3.chr30                 59342 52 -  40214260 I
e papAnu2.JH685126              41701  0 +    130206 C
e rheMac3.chr7              108532374 62 - 170124641 I

a score=60559.000000
s hg38.chr15_KI270850v1_alt    198729 41 +    430880 TTTTA----AAAAAAAACATTAAATCATATGAACATATGCACAAC
s panTro4.chr15              17721777 41 -  99548318 TTTTT----TAaaaaaacattaaatcatatgaacatatgcgcaac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060262 39 +  10928107 TTTT------AGAAAAACATTAAATCATATGAAcatatgcccaac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102152880 41 + 121039945 TTTTT----AATAAAAACATTAAATCATATGAACATATGTGCAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351247 39 - 171882078 TTttt------aaaaaacattaaatcatatgaacatatgcccaac
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070907 42 -  24206276 ttttt---taaaaaaaacattaaatcatatgaacatatgcccaac
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18020412 39 + 132174527 TCTTT------TTAAAACATTAAATCATATGTCCATATGCTTAAC
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 59394 45 -  40214260 TTTTAACGTGAACAATCTATTAAATCATATTCCCACATGTCCAAT
i canFam3.chr30             I 52 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e papAnu2.JH685126              41701  0 +    130206 C
e rheMac3.chr7              108532374 62 - 170124641 I

a score=57774.000000
s hg38.chr15_KI270850v1_alt    198770 27 +    430880 ACCAAACTTTAAAGAAATAGAACCTTT
s panTro4.chr15              17721818 25 -  99548318 accaaacttca--gaaatagaaccttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060301 25 +  10928107 accaaacttaa--gaaatagaacctgt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102152921 25 + 121039945 ATCAAACTTAA--GAAATAGAACCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532436 25 - 170124641 ACCCAACTTAA--GAAATAGAAACTTT
i rheMac3.chr7              I 62 C 0
s macFas5.chr7              107351286 25 - 171882078 accaaacttaa--gaaatagaaccttt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070949 25 -  24206276 accaaacttaa--gaaatagaaccttt
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18020451 24 + 132174527 ATCAAACTTAA--G-AATATAACCTTT
i calJac3.chr10             C 0 I 831
s canFam3.chr30                 59439 24 -  40214260 ACCAAGGTTAA--GAAATAGAACCTT-
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e papAnu2.JH685126              41701  0 +    130206 C

a score=42013.000000
s hg38.chr15_KI270850v1_alt    198797 25 +    430880 ggctgggcatggtggctcacgcctg
s panTro4.chr15              17721843 25 -  99548318 ggctgggcgtgctggctcacgtccg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060326 25 +  10928107 ggctgggtgtggtggctcacacctg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102152946 25 + 121039945 ggctgggcgtggtggctcacgcctg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532461 25 - 170124641 ggctgggtgttgtggctcacacctg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107351311 25 - 171882078 ggctgggcgtggtggctcactcctg
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070974 25 -  24206276 ggctgggcgtggtggctcactcctg
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 59463  7 -  40214260 ------------------ACACCTG
i canFam3.chr30             C 0 I 2
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e papAnu2.JH685126              41701  0 +    130206 C

a score=92733.000000
s hg38.chr15_KI270850v1_alt    198822 79 +    430880 taatcccagcactt-gggaggccaaggcaggtggatcacctgaggacaggagtttgagaccagcc--cagccaagatggtga
s panTro4.chr15              17721868 80 -  99548318 taatcccagctctttgggaggccgaggcaggtggatcacctgaggacaggagtttgagaccagcc--cagccagcatggcga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060351 78 +  10928107 t-atcccagcactttgggaggctgaggcaggtggatca-ctgaggacaggagtttgagaccagcc--cagccaacatggtga
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102152971 80 + 121039945 taatcccagcactttgggaggccgaggcaggtggatcacctgaggacaggagtttgagaccagcc--cggccaacatggtga
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351336 80 - 171882078 taattccagcactttgggaggccgaggcaggtggatcgcttgaggacaggagtttgagaccagcc--tggtcaacatggtga
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070999 80 -  24206276 taattccagcactttgggaggccgaggcaggtggatcgcttgaggacaggagtttgagaccagcc--tggtcaacatggtga
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 59472 52 -  40214260 -------ggatccctgggtggct-----------------------cagcagttgagcatcttccttcagcccaggtcgtga
i canFam3.chr30             I 2 I 177
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e papAnu2.JH685126              41701  0 +    130206 C
e rheMac3.chr7              108532486  0 - 170124641 C

a score=229968.000000
s hg38.chr15_KI270850v1_alt    198901 194 +    430880 aaccccatctctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtaatcccagctacttgggaggctgaggtgggagaatcacttgaacctaggaggcagaggttgcagtgagccaagattgcaccattgcactcaacagcctgggtgactagagtgaaactccatctcaaaaa--ataaaaata
s panTro4.chr15              17721948 192 -  99548318 agccccatctctactaaaaatacaaaaatcagccaggtgtggtggcaggtgcctgtaatcccagctacttgggaggctgaggtgggagaatcacttgaacctaggaggcagaggttgcagtgagccaagattgcatcattgcactc--cagcctgggtgagaagagtgaaacgccatctcaaaaa--ataaaaata
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060429 190 +  10928107 aaccccatctctactaaaaatacaaaaattagtcaggcgtggtggcaggtgcctgtaatcccagctacttgggaggctgaggtgggagaatcacttgaacccaggaggcagaggttgcagtgagctgagttcaccacattgcattc--cagcctgggtgacaagagtgaaactccatctcaaaaa----gaaaata
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102153051 192 + 121039945 aaccccatctctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtaatcccacctacttgggaggctgaggtgggagaatcacttgaacctaggaggcagaggttgcagtgagccaagattgcaccattgcactc--cagcctgggtgagaagagtgaaactccatctcaaaaa--ataaaaata
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351416 194 - 171882078 aaccccacctctactaaaaatacaaaaataagccgggtgtgatggccagtgtctctaatcccagctacttgggaggctgaggtgggagaatcacttgaacccaggaggcagaggttgcagtgagccaagatcacaccattgtactc--caacctgggtgacaagagcaaaactccatctcaaaaagagaaaaaaga
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071079 194 -  24206276 aaccccacctctactaaaaatacaaaaataagccgggtgtgatggccagtgtctctaattccagctacttgggaggctgaggtgggagaatcacttgaacccagaaggcagaggttgcagtgagccgagatcgcaccattgtactc--caacctgggtgacaagagtgaaactccatctcaaaaagagaaaaaaga
i chlSab2.chr29             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e canFam3.chr30                 59524 177 -  40214260 I
e papAnu2.JH685126              41701   0 +    130206 C
e rheMac3.chr7              108532486   0 - 170124641 C

a score=22915.000000
s hg38.chr15_KI270850v1_alt    199095 16 +    430880 aaaaagaaaTAGAACC
s panTro4.chr15              17722140 16 -  99548318 aaaaagaaatagaacc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060619 16 +  10928107 aaaaaaaactagaacc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102153243 16 + 121039945 aaaaagaaaTAGAACC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351610 16 - 171882078 ataaagaaatagaacc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071273 16 -  24206276 aaaaagaaatagaacc
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 59701 16 -  40214260 AAAAAAAAATTGTCCT
i canFam3.chr30             I 177 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e papAnu2.JH685126              41701  0 +    130206 C
e rheMac3.chr7              108532486  0 - 170124641 C

a score=145350.000000
s hg38.chr15_KI270850v1_alt    199111 80 +    430880 --------TTATCAGTACCTGT---AGCACCCTCTGTGCCCCTCCCTTGTCATGTCCTCTTtgggaggtatcttgaagggaatgtgacatc
s panTro4.chr15              17722156 80 -  99548318 --------ttatcagtacctgt---agcaccctctgtgcccctcccttgtcatgtcctctttgggaggtatcttgaagggaatatgaaatc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060635 80 +  10928107 --------ttatcagtacctgt---agcaccctgtgtgcccctcccttttcatgtcctcttTGGGAGGTATCTTGAAGGGAATAtgaaatc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102153259 80 + 121039945 --------TTATCAGTACCTGT---AGCACCCTCTGTGCACCTGCCTTGTCATGTCCTCTTtgggaggtatcttgaagggaatatgacatc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351626 80 - 171882078 --------ttatcagtacctgt---agcactctgtgtgcccctcccttgtcatgtcctctttgggaggtatcttgaaaggaatatgaaata
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071289 80 -  24206276 --------ttatcagtacctgt---agcactctgtgtgcccctcccttgtcatgtcctcttTGGGTGGTATCTTGAAAGGAATATGAAATA
i chlSab2.chr29             C 0 I 139
s calJac3.chr10              18021306 79 + 132174527 --------TTTTCAGTCCTTGT---A-CCCCTGGTGTGCCCCACCCTTGTCATGTCCTCTTTGAGAGAGAACTTTATGGGAATAtgaaatt
i calJac3.chr10             I 831 C 0
s canFam3.chr30                 59717 91 -  40214260 TTTGTTTTTCATCAGGACCTTTGAAAGCCCCCTGTATGTCCCTGCCCTCTCACTTCTTTCTCAAGAGatctctttaaggaaatataaaatg
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e papAnu2.JH685126              41701  0 +    130206 C
e rheMac3.chr7              108532486  0 - 170124641 C

a score=1134041.000000
s hg38.chr15_KI270850v1_alt    199191 564 +    430880 ttggccaggaaactggaggatttgtgactgcaggtggtgttttcattattttttcctgctgtagttagaacttcagggaggggatgatct-gggaggtaaatggctgaaatgctattggatttgtgtttgtggcccatggctcctgataccagaaagaagggccttttctggggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtattgggattcacagactttggagaatagcaggtatgactcagaaa----gatttacaggaaagagccagaaca--atatgtttatggcctctgatgtccgcagtgacaacttgagagtcgtgaataataagcaaaattgaacttgagataaagtataacacaaagaTGGGAGTGACTGCAGGAGGGAATGTGCCCTGGTCAGCAACTTGGTAAATCCAACTTGCTGTA-CTTTTAAGGAAGTCGTTTTCAGATGTTAcaggcaacatcagagttactgaattgaattctgaggtagtacttt
s panTro4.chr15              17722236 564 -  99548318 ttggccaggaaactggaggatttgtgactgcaggtggtgttttcattattttttcctgctctagttagaacttcagggaggggatgattt-gggaggtaaatggctgaaatgctattggatttgtgtttgtggcccatggctcctgataccagacagaagggccttttctggggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtattgggattcacagactttggagattagcaggtatgactcagaaa----gatttacaggaaagagccagaaca--atatgtttatggcctctgatgtccacagtgacaacttgagagtcgtgaataataagcaaaattgaacttgagataaagtataacacaaagaTGGGAGTGACTGCAGGAGGGAATGTGCCCTGGTCAGCAACTTGGTAAATCCAACTTTCTGTA-CTTTTAAGGAAGTCGTTTTCTGATGTTAcaggcaacatcagaattactgaattgaattctgaggtagcacttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10060715 566 +  10928107 ttggccaggaaactggaggattcatgactgcaggtggtgttttcattattttttcctgctctagttagaacttcagggaggggatgattt-gggaggtaaatggctgaaatgctattggatttgtgtttgtggcccatggcttctgataccagaaagaagggcattttctggggttgg----aggatttcttaagaggcttgggaagagtgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagTTATT-AGTATCGGGATTCACAGACTTTGGAGAATAGCAGGTATAACTCAGAAA----GATTTACAGGAAGGAGCCAGAACAATATATATTTATGGCCTCTAATGTCCACAGTGACAATTTGAGAGTCATGAATAATAAGCAAAATGGAACTTGAGATAAAGTATAACACAAAGATGGGAGTGACTGCAGGAGGGAATGCGACCTGGTCAGCAACTTGGTAAATCCATCTTGCTGTG-CTTTTAAGGAAGTCATTTTCTCATGTTAcaggcaacatcagaattactgaattgaattctgaggtagtagtta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102153339 564 + 121039945 ttggccaggaaactggaggattcgtgactgcaggtggtgtcttcataattttttcctgctgtagttagaacttcatggaggggatgatct-gggaggtaaatggctgaaatgctattggatttgtgtttgtggcccgtggctcctgataccagaaagaagggccttttctcgggttgg----agtatttcttaagaggcctgggaagaatgtgattgctttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtatcgggattcacagactttggagaatagcaggtatgactcagaaa----gatttacaggaaagagccagaaca--atatgtttatggcctctgatgtccacagtgacaacttgagagtcatggataataagcaaaatggaacttgagataaagtataacacgaagaTGGGATTGACTGCAGGAGGGAATGCGCCCTGGTCAGCAACGTGGTAAATCCAACTTGCTGTA-CTTTTAAGGAAgctgttttctgatgttacaggcaacatcagaattactgaattgaattctgaggtagtacttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351706 566 - 171882078 ttggccaagaaactggaggatttgtgactgcaggtggtgttttcattattttttcctgctctagttagaactttagggaggggatgatct-gggaggtaaatggccgaaattctactggatttgtgtttgtggcccatggctcctgatgccagaaagaagggccttttctggggttgg----agtatttcttaagaggccttggaagaaggtgattgccttgagctaactgaccttctgaagaggaccttaaactgaaTTGCCAAGTTATT-AGTATCGGGATTCACAGTGTTTGGAGAATAACAGGTATGACTCAGAAA----GATTTGcaggaaagagccagaacaaaatatatgtatggcctctgatgtccactgtgacatgttgagagtcatgaataataagcaaaatgaaacttgagataaagcataacacaaagaTGGGAGTGAGGGCAGGAGGGAATGCAACCTGGTCAGCAACTTGACAAATCCAACTTGCTGTA-CTTTTAAGGAAGTCATTTTCTGATGTTAcaggcaacatcagagttactgacttgaattcctaggtagtacttt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071508 563 -  24206276 ttggccaagaaactggaggatttgtgactgcaggtggtgttttcattattttttcctgctctagttagaacttcagggaggggatgatct-gggaagtaaatggccgaaattctactggatttgtgtttgtggcccatgg---ctgatgccagaaagaagggccttttctgtggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaaTTGCCAAGTTATT-AGTATCGGGATTCACAGAGTTTGGAGAATAGCAGGTATGACTCAgaaa----gattcacaggaaagagccagaacaaaatatatgtatggcctctgatgtccactgtgacatgttgagagtcatgaataataagcaaaatggaacttgagataaagcataacacaaagaTGGGAGTGAGGGCAGGAGGGAATGCAACCTGGTCAGCAACTTGGCAAATCCAACTTGCTGTA-CTTTTAAGGAAGTCATTTTCTGATGTTAcaggcaacatcagagttactgacttgaattcctaggtagtacttt
i chlSab2.chr29             I 139 C 0
s calJac3.chr10              18021385 570 + 132174527 ctggccaggaaactggaggatttgtgactgcaggtggtgttttcattattttttcctgctctaggtaaaacttcagggagggcatgctctggggaggtaaatggctgaaattctattggatttctgtttctggaccatggttcctgataccagaaagaagggccttttctgggcttggagttagtttttcttaagaggccagggaagaaTGTGATTGCCTTGAGC-AACTGCTCTTCTGAAGAGGACCTTAAACTGAATTGCCAAGTTATT-AGTATCGGGATTCACAGACTTTGGAGGATAGCAGGTATGCCTTGGAAA----GATTTACAGGAAGGAACCAGAACAATATATATTTGTGGCATCTGATGTCCACAGTGATAACTTTAGAGTCATGAATATTAAGAAAAATGGAACTTAAGATAAAGCATAACACAAAGATGGGAGTGAGGGCAGGAGGGAATGCGACCTGGTCAGCAAATTGGTAAATCCAACGTGCTGTG-CTTTTAAGGAAGTCATTTTCTGATGTTAcagacaacatcagaattactgaattgaattctgaggtagtacttt
i calJac3.chr10             C 0 I 300
s canFam3.chr30                 59808 526 -  40214260 ttgaccaggcaactgaaagacttgtggctgcacttaatgttttcatggtattttcataatctagatagaacttcagggaggggacgatct-ggaaggtaaatagctgaaattctgt---atttgtctttctggaccatgactccc--tgccag-----------tttgctagggctgg----agtatttgttaaaaggactaggaataatatgattgctctgaactaagtgaccGT-----------TGCAAACTGAACTACTGAGTTATTAAGTATCAGGATTCACAGATTTTGG--------AGGTATGACTCAGAAAGAAGGATTTACAGGAAGGAGCGTCaaca----gtgtttgtggcctcagatgtccatggtgacaacttgaaagtcataagtaataag-agaatggagcttgagataaaatataacacaagTTTGGGGATTGTGGACCTACTAGAT------TCGTCTGCAGCTAGGCTAATGTGTTATGCTGTGTTTTTTAAAGAGGTGGTGGtctggtttttcaagccgtatgtgaactactgagctgaattctgaggtggtatttt
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e papAnu2.JH685126              41701   0 +    130206 C
e rheMac3.chr7              108532486   0 - 170124641 C

a score=1143421.000000
s hg38.chr15_KI270850v1_alt    199755 591 +    430880 aagaaaggtctacttagataaggttaggttcatttagagaataatagccaggattgggaagagattcttttccatgtcctaggatagctggtgaaattatggatttggagaggaaaacatgggggttctggttcatgatagattgtcttcaactatttgaaggagtatgtatatggaagcattag------tttttatttgtttttggtgaagacagggcataaaactagaactaataagtcaaattacaaagaggtgattttcaactcaatgtaaggaagtgacttgtaactatttagacccatcTGGTGATGTagtctttgaaaactagaatgttcttcatctttaagaataacttagaaggctgagatgttaaatgg-gaagtcagataacttcatgagatccttgtagagcctgagagtctCG--TTCTGAGTTAAAATATACTAAGGTAACTCAAACTTA-ATTTTACCAGTCACCCTCAACCTTTATTT-TCCC-------CTCCCTGAAGAACTCTTTTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGCTTATGGAATAGAGTCCccaggttttgatgtag--gatcctct
s panTro4.chr15              17722800 593 -  99548318 aagaaaggtctacttagataaggttaggttcatttagagaataatagccaggattgggaagagattcttttccatgtcctagcatagctggtgaaattgtggatttggagaggaaaacatgggggttctggttcatgatagattgtcttcaactatttgaaagagtatgtatatggaagcattag------tttttatttgtttttggtgaagacagggaataaaactagaactagtaagtcaaattacaaagaggtgattttcaactcaatgtaaggaagTGACTTGTAACTATTTAGACCCATCTGGTGATGTAGTCTTTGAAAACTAGAATGTTCTTCATCTTTAAGAATAACTTAGAAGGCTGAGATGTCAAATGG-GAAATCAGATAACTTCATGAGATCCTTGTAGAGCCTGAGAGTCTGG--TTCTGAGTTAAAATATACTAAGGTAACTCAAACTTA-ATTTTACCAGTCACCCTCAACCTTTATTT-TCCC-------CTCCCTGAAGAACTCTTTTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGCTTATGGAATAGAGTCCCCAGGTTTTGATGTAGAggatcctct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10061281 599 +  10928107 aagatgggtctacttagataaggttagggtcatttaaagaataatagccaggattgggaagcgattcttttccatgtcctaggatagctggtgaaattgtggatttggagaggaaaacatgggggttcaggttcatggtagcttgtcttcaactatttgaaaaagtatgtatatggaagcattagtttttatttttatttgtttttggtgaagacagggcataaaactagaactagcaagtcaaattacaaagaggtgattttcaactcaatataaggaagtgacttgtaagtatttagacccatctggtgatgtagtctttgaaaaatagaatgttcttcatccttaagaataatttagaaggctgagatgTTAAATGA-GAAATCAGATAACTTCATGAGATCCTTGTAGAGCCTGAGAGTCTGG--TTCTGAGTTAATATATACTAAGGTAACTCAAACTTC-ATTTTACCAGTCACCCTCAACCTTTATTT-TCCC-------CTCCCTGAAGAACTCTTTTTATTTCTGTGAAATCTTGATTCCTGAGTTCCAGGTTACAGATTTTATGCAATAGAGTCCCCAGGTTTTGATGTAGAggatcctct
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102153903 589 + 121039945 aagaaaggtctacttagataaggttaggttcatttagagaataatagccaggtttgggaagagattcttttccatgtgctaggatagctggtgaaattgtggatttggagaggaaaacatgggggttctggttcatgatagctcgtcttcaactatttgaaggagtatgtatatggaaacattag------tttttatttgtttttggtgaagacagggcataaaactagaactaataagtcaaattacaaagaggtgattttcaactcaatgtaaggaagtgacttGTATTTATTTAGACCCATCTGCTGATGTAGTCTTTGAAGACTAGAATGTTCTTCATCTTTAAGAATAACTTCGAAGGCTGAGATGTTAAATGG-GAAATCAGATAACTTCATGAGATCCTTGTAGAGCCTGAGAGTCTCA--TTCTGAGTTAAAATATACTAAGGTGACTCAAACTTC-ATTTTACCAGTCACCCTCAACCTTCATTT-TCCC-------CTCCCTGAAGAACTC--TTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGCTTGTGGAATAGAGTCCccaggttttgatgtag--gatcctct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352272 595 - 171882078 aagaagggtctacttagacaaggataggttcatttagagaataatagccaggattgggaagagattcttttccatgtcctaggatagctggtgaaattgtggatttggagatgaaagcatgggggttcaggttcatgatagcttgtcttcaactatttgaaaaagtatgtatatggaagcattagtttttatttttatttgtttttggtgaagacagggcataaaactagaactaataagtcaaattacaaaggggtgattttcaactcaatgtaaggaagtgacttgtaactatttagac----ctgGTGATGTAGTCTTTGATAAATAGAATATTCTTCATCCTTATGAATAACTTAGAAGGCTGAGATGTTAAATGG-GAAATCAGATAACTTCATGAGATCCTTGGAGAGCCTGAGAGTCTGG--TTCAGAGTTAACATATACTAAGGTAACTCAAACTTC-ATTTTACCAGTCACCCTCAATCTTTATTT-TCCC-------CTCCCTGAAGAACGCTTTTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGTTTATGGAATAGAGTCCCCAGGTTTTGATGTAGAggatcctct
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072071 599 -  24206276 aagaaggatctacttagacaaggataggttcatttagagaataatagccaggattgggaagagattcttttccatgtcctagggtagctgatgaaattgtggatttggagaggaaagcatgggggttcaggttcatgatagcttatccttagctatttgaaaaagtatgtatatggaagcattagtttttatttttatttgtttttggtgaagacagggcataaaactagaactaataagtcaaattacaaaggggtgattttcaactcaatgtaaggaagTGACTTGTAACTATTTAGACCCATCTGGTGATGTAGTCTTTGATAAATAGAATGTTCTTCATCCTTAAGAATAACTTAGAAGGCTGAGATGTTAAATGG-GAAATCAGATAACTTCATGAGATCCTTGTAGAGCCTGAGAGTCTGG--TTCAGAGTTAACATATACTAAGGTAACTCAAACTTC-ATTTTACCAGTCACCCTCAATCTTTATTT-TCCC-------CTCCCTGAAGAACGCTTTTTATTTCTATAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGTTTATGGAATAGAGTCCCCAGGTTTTGATGTAGAggatcctct
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18022255 574 + 132174527 aagaaaggtctatttagataagtttaggtttatttagagaatcgtagccacgattgggaagagattgtattccatgtcctaggacaggtggtgacattgtggatttggagag---aatatggggg----ggttgatgttagcttgtcttcagctctttgaaggagcatatatatggaagcattat------tttttatttgtttttagtgaacacagggcacaaaactagaactagtaagtcaaattacaaagaggtgattttcaactcaatatgaagTGATTTGTTGTAACTATTTAGACCCATCTGATGATGTA---------AAGTAGAATGTTCCTCATCCTTAAGAATAACTTAGAAGGCTGAGTTATTAAATGGAAAAATCAGGTGACTTCATGAGATCCTTGTAGAGCCTGAGAGACTGG--TTCTAAGTTAATATATACTAAGGTAACTCAAACTTC----TTAACAGTCACCCTCAACGTTTTTTTCCCCC-------CTCCCTGAAGAACTCTCTTTATTTCTGTAAAATCTAGATTCCTGAGTTCTAGGGTATAGAGTTTATGGAATGGAGTCCCCAGGTTTTCATGTAGAAGACTTA--
i calJac3.chr10             I 300 I 911
s canFam3.chr30                 60334 559 -  40214260 gggaaggggttatccagacaaatataggttcatttagagaataggggcaaggatttgaaagctat----ttccatgtcctaagataggtggttaaactgtaggtttggagagaagaacataggga-------tcatgagagcttgtcttcaactatttaaaggaatagttatgtggaagct----------tttgtctcggtttttgattaacacaaagcatgacattaaaactagtaagtcagactttaaagagatgcttttcaactgagtatagggaagtga----taactatgtagagccatctggtgc--caatctttcaagagtagaatgttcctcatcattaaaagtatCTTGAAAGCCCAAGGTATTGAACTG-GAA--------ACCTCAT--GATCCTTGTGAACCTAAAGATCCTCAGTTTTGGAGTTA--GTATGCCAAGATAACTCAAATTTCTATGTTCACAGTCATCCCCATCCT-------CCCCACAATAACCCTTTAAGGAACTC---TTATTTCTGTAAAATATTGATTACTGAGTTCCCGGGTGTAG--TTTATGGAACAGAGTCCCTCGGTCTTGATGTGGAGGAGTTACT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e papAnu2.JH685126              41701   0 +    130206 C
e rheMac3.chr7              108532486   0 - 170124641 C

a score=141140.000000
s hg38.chr15_KI270850v1_alt    200346 89 +    430880 ttctcctgtctgaaaatatccttta-------gtatttcccttagtgtgagtctgcagatag-aaaaaatccttattttttatttcattattaaaga--------
s panTro4.chr15              17723393 89 -  99548318 ttctcctgtctgaaaatatccttta-------gtatttcctttagtgtgagtctgcagatag-aaaaaatccttgctttttatttcatcattgaaga--------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10061880 90 +  10928107 ttctcctgtctgaaaatatccttta-------gtatttcctttagtgtgagtctgcagatagaaaaaaatccttatttgttatttcattattgaaga--------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102154492 89 + 121039945 ttctcctgtgtgaaaatatccttta-------gtatttcctttagtgtgagtctgcagatag-aaaaaatccttatgttttatttcattattgaaga--------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352867 89 - 171882078 ttctcttgtctgaaaatatccttta-------gtatttcctttagtgtgagtctgcagatgg-agaaaatccttactttttatttcattattgaaga--------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072670 89 -  24206276 ttctcctgtctgaaaatatccttta-------gtatttcctttagtgtgagtctgcagatgg-agaaaatccttactttttatttcattattgaaga--------
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18023740 82 + 132174527 ttctcctgtctgaaaatatcattta-------gtatttcctttagtgtgagtctgaagataa-aaagagt-------ttttatttcatttttgaaga--------
i calJac3.chr10             I 911 C 0
s canFam3.chr30                 60893 94 -  40214260 ---------CTGAAGAATTACTTAAAATGAAGGTAGTTCTCTCAGT-CATATAGTCAATTAA-AAACAGTTTATCATTTTGGATCAATACGTAAAGATCTAAAAA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e papAnu2.JH685126              41701  0 +    130206 C
e rheMac3.chr7              108532486  0 - 170124641 C

a score=2612653.000000
s hg38.chr15_KI270850v1_alt    200435 1400 +    430880 gtatcttcattg-------agcgtaagtctctagattggcagttt----ccatctttca------------------gcaccttgc----agatatcattctg-----------ttatgctagcttccattg------------------------tttctcctgaAG--------------------TGTTTATGGTGGTTAAATCTTGTGGAgtctttgatcagttctggaaaattctccacaaccatatcttcagctcttgcttctgtcccattctt-----------ttttttcttacagggctc-tacatatatgataaactt-ttcaatatatt-------gtctt---attttctcaattttctacctttt--tgtctttctgacct-----------------------tttt----ccggtttactgaatctgtcttctgctaggttactgc-tgtggttaagcttatccattatgttattaatttcagttttggtagttctaaattgcagaattt-catatggttca---ttttataatttgcatttct-ctgcc-aggttttcagtcttgtcctgtctttccttgtct---ttcagcagagttattttgaag--tgtgtctgctaactctgtt--atctcaatcccttgtggttttgtgtctgttgtttgcttctcttgttttctgt-tatg-tc----atctttaagtctcatgtggctttttatttttagtgatagacatt---------atatatg-aaaaat----tgcagagctaatttgaagccttggatgatattcttctccagagaggatttacattt-cccctgctagggtcttggaaattca---------------------caatcagggattgagacga-ttaaagc-tggccatcattccctgtt----ggggcattttgcagtttgttcttcagatt-cccaacc-taaggagtgggagacttagcagggcctctcctcagtggat-gctg-agctccaatgtttaactccc------tgtgagctctgtgaggctgtgagttctagctcagcttgttaacctcttc---t--tctctgctgtcattggaagaaaacccaagg------------g---ggagaaaagaagaccctgttctctgctattcccttt----------tctcAG-CCCTGTAATCAttacattttgtccatct-ttctagttctcagtgagaggattgatctaagttacctactctatcattattggaaTGGTTCCTTTATATAGTTCTAGTG-AAGTGAAACCCCTTCATATGTTTCATAAGTTTACCATAA-CACTGTTCTGTTTGGGC-------CTCATTT--TAACTTCATTTTTATTTGCTTTGGTT-----TTCATTTCATTTTTTCTGTACTAATTTTACTTTTATGACTCTCACCCATTATCTGATAATAAA--TGTACATATTCTTTTATAGA--CTTTTAAAATCTTCTAAATGGTATATAG-TATTAACGATGTTCTTAAAATTAATTAAACTTGCTTATTTGCTTTTTAGGATAACTTTCCATTTGAGCCTCCATTTGTTTGAGTGGTATTACCTGTTCTCTCAGGAGCATAAGTTTAAGTGATTA--------CTTTAAATGtttt
s panTro4.chr15              17723482 1414 -  99548318 gtatcttcattg-------agcgtaagtctctagatgggcagttt----ccttctttca------------------gcacttcgc----agatatcattctc-----------ttatgccagcttccattg------------------------tttctcttgaAG--------------------TGTTTATGGTGGttaaatcttgtgaagtctttgatcagttttgggaaattctccacaaccatatcttcagctcttgcttctgtcccattctt-----------gtttttcttccagtgctc-tacgtatgtgataaactt-ttcaatatgtt-------gtctt-ttattttctcaattttccacctttt--tgtctttctgacat-----------------------tttt----gcagtttactgaatctgtcttctgctaggttactgc-tgtggttaagcttatccattatgttattaatttcagttttggtagttctaaattgcagaattt-catatggttca---ttttataatttgcgtttct-ctgcc-aggttttcagtcttgtcccatctttccttgctcatgttcagcag--ttattttgaag--tgtgtctgctaactctgtt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttgttttctgt-tatg-tc----atctttaagtctcatgtggctttctatttttagtgatagacatt---------atatatggaaaaat----tgtagagctaatttgaagccttggatgatattcttctccagagaggatttacattt-cccctgccaggggcttggaaattaa---------------------caatcagggattgagatga-ttaaagc-tggccatcattccctgtc----ggggcaatttgcagtttgttcttcaggtt-cccaacc-taaggagtgggagacttaacagggcctctcctcggtggat-gctg-agctccaatgtttatctccc------tgtgagctctgtgaggctgtgagttctagctcagcttgttaacctcttc---t--tctctgctgtcattggaggaaaacccaagg------------g---gtaaaaaagaagaccctgttctctggtattcccttt----------tctcag-ccctgtaatcattacattttgtccacct-ttctagttctcagtgagaggattgatctaagttacctactctgtcattattgcaaTGGTTCCTTTATATAGTTCTAGTG-AAGTGAAACCCCTTCATATGTTACATAAGTTTACCATAA-CACTGTTCTGTTTGGGC-------CTGATTT--TAACTTCATTTTTATTTGCTTTGGTT-----TTCATTTCATTTTTTCTGTACTAATTTTACCTTTATGACTCTCACCCATTATCTGATAATAAA--TGTACATATTCTTTTATAGATTCTTTTAAAATCTTCTAAATAGTATATAG-TATTAACGATGTTCTTAAAATTAATTAAACTTGCTTATTTGCTTCTTAGGATAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTATTACCTGTTCTCTCAGTAGCATAAGTTTAAGTGATTAAGTGATTACTTTAAATGCTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10061970 1423 +  10928107 gtatctttattg-------agtttgagtttctagattggcagttt----ccttctttca------------------gcaccttga----agatatcattctc-----------ttacgccggcttccattg------------------------tttctcttgaAG--------------------TGTTTATGGTGGttaaatcttgtgaagtctttgatcagttttggaaaattctccgcaaccatatcttcagctcttgcttctgtcccattctc-----------gtttttcttccagggctc-cacatatgtgataaactt-ttcaatatatt-------gtctt-ttattttctcaattttctacctttt--tgtctttctgacct-----------------------tttt----ccggtttactgaatctgtcttctgctaggttactgc-tgtggttaaacttatccattaagttgttaatttcagtttcagtagttctaagttgcagaattt-tatatggctca--tttttataatttgcatttct-ctgcc-aggttttcagtcttgtcccatctttccttgctcatgttcagcagaattattttgaag--tgtgtctgctaactc--tt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttgttttctgt-tatg-tc----atctttaaatctcatgtggctttttatttttagtgatagacatt---------atatatg-aaaaat----tgtagagctaatttgaagccttggatgatattcttctccagagaggatttacatttccccctgccaggggcttggaaattagcaacccagcattgtcttcatccaatcagggatggagatgatttaaagcagggccatcattccctgtc----agggaaatttgcaatttgttcttcaggttccccaacc-taaagagtgggagacttagcagggcctctcctcagtgaat-gctg-agatccaatgtttacctccc------tgtgagctctgtgaggctgtgagttctagctcagcttgttaacctcttc---t--tctctgctgtcattggaagaaaacccaagg------------g---ggaaaaaagaacaccctgttcaatgctattcccttt----------tctcag-ccctgtagtcattacattttgtccactt-ttctagttctcagtcagaagattgatctaagttacctagtctatcattactggaaTGGTTCCTTTATATAGTTCTATTG-AAGTGAAACCCCTTCATATATTTCATAAGTTTATCGTAA-CACTGTTCGGTTTGGGC-------CTGATTT--TAACTTCATTTTTATTTGCTTTGGTT-----TTCATTTCATTTTT--TGTGCTAATTTTACCTTTATGACTCTCACCCATTATCTGATAATAAA--TGTACATATTCTTTTATAGATTCTTTAAAAATCTTCTAAATAGTATATAG-CATTAAGGATGTTCTTAAAATTAATTAAACCTTCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTGTTACCTATTCTCTCAGGAGCATATGTTTAAGTGATTA--------CTTTAAA------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102154581 1405 + 121039945 gtgtcttcactg-------agtgtaagcctctagattggcagttt----ctttctttca------------------gcaccttga----ggatatcattctc-----------ttacgctagcttccattg------------------------tttctcttgaAG--------------------TGTTTATGGTGGttaaatcttgtgaagtctttgatcagttttggaaaattctccgcaaccatatcttcagctcttgcttctgtcctatcctt-----------ttttttcttccagggctcttacatatgtgataaactt-ttcaatatatt-------gtctt-ttattttctcaattttctacctttt--tgtctttctgatct-----------------------tttt----ccagtttactgaatctgtcttctgctgggttactgc-tgtggttaagcttatccattacgttattaatttcagttttggtagttctaaattgcagaattt-catatggttca---ttttataatttgcacttct-ctgtc-aggttttcagtcttgtcccgcctttccttgtct---ttcagcagagttattttgaag--tgtgtctgctaactccgtt--atcttgatcccttgaggttttgtgtctgttgtttgcttctcttgttttctgt-tatg-tc----atctttaagtctcatgtggctttttatttttagtgatagacatt---------atatatg-aaaaat----tgtagagctaatttgaagccttggaggatattcttctccagagaggatttacattt-cccctgccagggacttggaaattaa---------------------caaccagggattgagatga-tgaaagc-tggccatcattccctgtc----agggcaatttgcagtttgttcttcaggtt-cccaacc-taaggagtgggagacttagcagggcctctcctcggtggat-gctg-agctccagtgtttatctccc------tgtgagctctgtgaggctgtgagttctagctcagcttgttaacctcttc---t--tctctgctgtcattggaagaaaacccaagg------------g---gaaaaaaagaagaccctgttctctagtattcccttt----------tctcAG-CCCTGTAATCGttacgttttgtccacct-ttctagttctcagtgagagggttgatctaagttacctagtctatcattattggaaTGGTTCCTTTATGTAGTTCTATTG-AAGTGAAATCCCTTCATATGTTACATAAGTTTACCATAA-CACTGTTCTGTTTGGGC-------CTGATTT--TAACTTCATTTTTATTCGCTTTGGTT-----TTCATTTCATTTTTTCTGTACTAATTTTACCTTTATGACTCTCACCCATTATCTGATAATAAG--TGTACATAGTCTTTTATAGATTCTTTTAAAATCTTCTAAATAGTATATAG-TATTAACGATGTTCTTAAAATTAATTAAACTTGCTTATTTGCTTTTTACTATAACTTTCCATTTCCTCCTCCATTTGTTTGAGTGGTATTACCTGTTCTCTCAGGGGCATAAGTTTAAGTGATTA--------CTTTAAATTTTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352956 1427 - 171882078 atatcttcactg-------agtgtaagtttctagattggcagttt----ccttctttcg------------------gcaccttga----agatatcattctc-----------ttatggtagcttccattg------------------------tttctcttgaAG--------------------Tgtttatggtgcttcaatcttgtgaagtctttgatcagtttttgaaaactctccgcaaccatatcttcagctcttacttctgtcccattctt------------tttttcttccaggactc-tacgtatgtgataaactt-ttcaacatact-------gtctt-ttattttctcaattttctgcctttt--tgtctttctgacct-----------------------tttt----tcagtttactgaatctgtcttctgctaggttactgc-tgtggttaaacttatccattaagttattaatttcagttttgatagttctaaattgcagaattt-catatggttga--ttttcataatttgcatttct-ctgcc-aggttttcagtcttgtcctgtctttccttgctcatgttcagcagagttattttgaag--tgtgtctggtaactctgtt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttattttctgt-tatg-tc----attcttaagtctcatgtggctttttatttttagtgatagacatt---------atatatg-aaatatataatgtggagctaatttgaagccttggatgatattcttctccagagaggatttacatttgcccctgccaggggcttggaaattagcgacccaggattgtctcatc-caatcagggattgagatga-ttaaagc-tggccatcattccctgtc----agggcaatttgcagtttgttcttcaggtc-cccaacc-tgaggagtgggagagttagcagggcctctcctcggtggac-gctg-agctccaatgtttatctccc------tgtgagctctgtgaggctgtgagttctagctcagcttattaacctcttc---t--tctctgctgtcattggaagaaaacccaagg------------g---ggaaaaaagaagactctgttctctggtattcccttt----------tctcAGCCCCTGTAATCATTACATTTTGTCCACTT-TTCTA-TTCTCAGTGGGAAGATTGATCTAAGTTACCTAGACTGTCATCGTTGGAATGGTTCCTTTATATAGTTCTATTG-AAGTGGAACCCCTTCATATGTTCCATAAGTTTACCATAA-CACTGTTCTGTTTGGGC-------CTGATTT--TCACTTCATTTTTATTTGCTTTGGTT-----TTCATTTCTGTTCC----TACTAATTTTACCTTTATGGCTTTCACCCATTATCTGATAATAAA--TGTACATATTCTTTTATAGATTCTTTGAAAATCTTCCAAAGAGTATATAG-CATTAAGGATGTTCTTCAAATTAATTAAACTTGCTTATTTGCTTTTTAGGCTAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTGTTAACTGTTCTTTCAGGAGCATACGTTTAAGTGATTA--------CTTTAAAttttt-
i macFas5.chr7              C 0 I 4241
s chlSab2.chr29              21072759 1438 -  24206276 atatcttcactg-------agtgtaagtttctagattggcagttt----ccttctttca------------------gtaccttga----agatatcattctc-----------ttatggtagcttccattg------------------------tttctcttgaAG--------------------Cgtttatggtgcttcaatcttgtgaagtctttgatcagtttttgaaaactctccgcaaccatatcttcagctcttacttctgtcccattctt------------tttttcttccaggactc-tacgtatgtgataaactt-ttcaacatatt-------gtctt-ttattttctccactttctgcctttt--tgtctttctgatct-----------------------tttt----tcagtttactgaatctgtcttctgctaggttactgc-tgtggttaaacttatccattaagttattactttcagttttggtggttctaaattgcagaattt-catatggttga--ttttcataatttgcatttct-ctgcc-aggttttcagtcttgtcctgtctttccttgctcatgttcagcagagttattttgaag--tgtgtctggtaactctgtt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttattttctgt-tatg-tc----attcttaagtctcatgtgactttttatttttagtgatagacattatatatgaaatatatg-aaatatataatgtagagctaatttgaagccttggatgatattcttctccagagaggatttacatttgcccctgctaggggcttggaaattagcgacccaggattgtctcatc-caatcagggattgagatca-ttaaagc-tggccatcattccctgtc----agggcaatttacggtttgttcttcaggtt-cccaacc-tgaggagtgggagagttagcagggcctctcctcggtggac-gctg-agctccaatgtttatctccc------tgtgagatctgtgaggctgtgagttctagctcagcttattaacctcttc---t--tctctgctgtcattggaagaaaacccaagg------------g---ggaaaaaagaagactctgttctctggtattcccttt----------tctcAGCCCCTGTAATCAttacattttgtccactt-ttctagttctcagtgggaagattgatctaagttacctagtctgtcatcgttggaaTGGTTCCTTTATATAGTTCTATTG-AAGTGGAACCCCTTCATATGTTCCATAAGTTTACCATAA-CACTGTTCTGTTTGGGC-------CTGattt--tcacttcatttttatttgctttggtt-----ttcattttTGTTCC----CACTAATTTTACCTTTATGACTTTCACCCATTATCTGATAATAAA--TGTACATATTCTTTTATAGATTCTTTGAAAATCTTCCAAATAGTATATAG-CATTAAGGATGTTCTTCAAATTAATTAAACTTGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTGTTAACTGTTCTTTCAGGAGCATAAGTTTAAGTGATTA--------CTTTAAAtttttt
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18023822 1389 + 132174527 atattttcattg-------agtgtaactttctaggttggcagt--------gttttcca------------------gcacctcga----agatatcactctc-----------ttaccccagcttccattg------------------------tttctcttgaAG--------------------TATTTATGGTGGttaaatctcgtgaagtctttggttggttttggaaaattctcagcaaccgtatcttcaggtattgcttctgtcccattctttctttctttttttttcccttccagaactc-tacatatgtaataaactt-ttcagtatatt----------tt-ttattttctccattttctaccattt--tgtctttctgacct----------------------agttt----ccagtttactgaatctctcttctactaagttactgc-tgtggttaaacttatccattaagttattaatttcagctattgtattgctaaatttcagaatttccatatggttcatttttttataatttgcatttct-ctgcc-aggttttcagtcttgtcttttctttcctt----atgtttggcaa------------------------taactc--tt--atcttgatcccttgtgattttgtgtctgttgtttgcttctctcattttctgt-tatg-tcgacagtctttaagtctcgtgtggct---tatttttagtggtagatgtt---------atatatg-aaaaat----ggtataactaatttgaagccttggatgata---ttctccagagaagatttgtgtttttccttgccggggccttggaaatcagcaatccaggattgcctcatc-cagtcaggaattgaggtga-ttaaagc-tggccatcattccctgtt----agggcaatttgcagcttgttcttcagggt-cccaacc-taaggagtgggagacttagcagggcctctcctcgggggagaggtg-agcttcagtgtttatctttt------tgtgggttcactgagtc--tgagttttagctcagcttgttaacctctTC---TTGTCTCTTCTGTCATTGGAAGAAAACCCAAGG------------GGTTGGGGGAAAGAAGACCCTGCTCTCTGGTGTTCCCTTT----------TCTTAG-CCCTGAAATTGTTACGTTTTGTTCACCT-TTCTAGTTCTTAGTCAGGAGCTTGATCTAAATTACCTAGTTTATCATTATTGGAATGGTTCCTGTATATAGTTTTATTG-AAGTGGCACCCCTTCATATATT-CATGAGTTTACCATAA-CACTGTTCTGTTTGGGC-------CTGATTT--TAACCTCATTTTTATTTGCTTTGGTT-----TTCGTTTTGGTTTTGGT-TACTAA------CTTTATAACTCTTACCCATTATCTGATAATAAA--TGTACACATTC-TTTATATAATCTTTTAAAATCTTGAAAGTAG--TGTAA-CATTGAGGATGTTCTT-----------AACTTGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGTTTAAGTGATTA--------CTTAAAAAAATTT
i calJac3.chr10             C 0 I 14
s mm10.chr9                  55190743 1175 + 124595110 GCATTTTTGAGG-------AATATAGATCTTTAGGTTTGCAAGTTGTCAACTCCTTTCA------------------GCTCCTTGAAGACAGATATCTTTCTT----------AGCATTGAAGATTCTAGAC------------------------TTTC-CTGAAAG--------------------TGCTTACAGTGGTCAAGCATTGAGAAGTCTTTG----------GAGAATTC---------------TCATCCATTTTTCTTGCCCTCTTCTC----------------TCTTCTAAGACTCAGACATGTGTGATAAAGAT-TGTGTCATTAT-------TTTCT-GCATTTTCTACCTCTTGTACCTTTTGGGGTCTTTCCCAAATTCATTCTGGTTGTTTGTTATTTATTTT----CCTATTTATTGAATCTCTGTACTGC-AGTTTGTTGA-CATAGTCTCAGTTGCCCATTGGGT--TTAGTTCCTGCTGCTGTGGCTCCAGAT--CAGAATCT-T-TATGGGTTCTGTTGTAATGATATACAGTTCTGCTGT---GGTTT--GGTTTCATCTTCTC-TTCCTTCCAGATGTTCAGCAG---TTTTGCAACA--TGCACCTGTTGACTC---T--GTCTCA-----TTGTGGTTGT---CCTGTTG--GGCTT--------------------------ACATCTAAGTCTTA---------------GCATTGATGGACATT---------ATGTGTG-AAAGGC----TGCAGAGGAGGGTTTCAGTATTG---------------TGGAAGGGATTAGCATTT-GCCCTGCCAGGGCCACAGACTGGGGATACCTAGG------------CAGTCAGTGATGGAGATTTCTGAGAGC-CAGACTTGACTCCCTACA----AGGGTAGTTGGCCGTTGGTCCCCCGTGG--CCCATCC-TGACGTGCGGAAGGCCC--CAGGATGTGGCCTCTGCTG-T-GCTGCAGCTCCAGCTTTTGCCTCCC------TG-----GCTGCAAGTC--TGCATTCTGTT---GTTTGCTAACCTCTTCCATT--CCTCTTCTATAGTGGAAAGAAAA------G------------G-----------------------------------CCTC----------TCCCAG-GCTTG-----ACCACACCATGC-------------TGCTCAGTG---------------------------------------------------TATGGTGTGAGTG-A-----------------------GTGAGTGCAGCTCTG-CGCTGTTCTGTC----C-------CTTATTTGATGGCTTTGCTGCTGTTG--CTTGTTT-----CTCATCTGTCCTTT--GATACTAATTTCACTTTCATGACTA-------------GGTAATAAAAGAGGATACATTTCTTTATTGATTATTTGAAAACCTTCTAGATAATGCAAAATTAAAAATAATGTTCTTAAAATTGATTAAACTTACTT------TTTTTAGGATAATTTTCCATTTGATCCTCCGTTTGTTAGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGTTTACATATTTA--------C------------
i mm10.chr9                 I 3974 C 0
s canFam3.chr30                 60987 1508 -  40214260 ATAGATTAAATGACATTGCACTTTATTTACCAAGCTTTGCA-TCT----GTGTCTTTCATTACATCTGCTAAGTAGCTCACCTTTT----ATCTACAATTTATTTGGAAGTAGATTGTAATAATTGCCATTAAGTTGGCATCTTGTGTGGGTAGGTTCTCCCTTGCAGTAGAAATCTATTTGTCAGAATACTCATAGCActtaaatcttgtgaagtcttt---ctgttttggaaaatactcag--acattctctccaaatactgcatcagtcccgttctc----------tcctctccttctaggactc-tacata--aaataagcctattcaatacattcacctgtgtcttgttattttctgtattttctacctttt--tctctctctcggcttcattttgtatg-----------ttttctggcctgtgtactgaatttctctttcactgagtctctacttgtggctaaattcatctgttaagt-----------------------------ttcagaatttctatgtaattca--tttttgttattt-tagtcct-ttgccaaggttttcaatcttgtcttttctttgcttgtacatattcaacatagttattttaaaagctatgtctgatggttctatttaatcttgctctcttacaggttt---tgtgtaatttgcttctc--acttcctggacatgctt----gtctttaagtcttgtgtaatgggctatttttaataatagacatt---------acaagtg-aaaaat----t----agctaatttgaagccttggatggtattcttctccagaaagggtttacatttgcccc--------acttgggcactagcaaccaaggatcactgaatc-gggtcagggatt-aggtgatgtaaagc-tggacttcggtgcttgtcagttagggcaatttatcacttgtccttcaggat-cctgaccttaaggtgtgggagacttgtctaggcctctccttggccaac--ccc-agctccaatatctacctccccagccttgtgag---tgtgagtc--tgagttata-ctgatcttgactgcttgtct---t--cctcttctataattgaaagaaaacccaaagtgggagtggggtg---gagggaagaaaggacccactctctagggctccctttttcttccagatcttgg-ctctgtaattgtcatattttgtccacctcttctagttctcgactggaggattgatctaagttacctagtctatcatgattggaagGGTTCCTTTATATAGTTCTATTGCAAGTGGAGCCCCTTCATATTTTTCATGACTCTATTGAAAGCACTGTTCTGATTTGGTAAAATCACTGACCT--TGACTTCATTTTTATTTGCTTTGGTTTTTACTTCATCTCAGTTTT--GATGCGATTTTTACTTTTATGACCCT----CATCATCAGATAATAAA--TGCACACATTC-TTTACAGACTATTTAAAAGTCTTTGAAATAA--TACAG-TGTTCAGGATTTTCTTAAAATGACTTAAATTTGCGTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGTTTCAGTAACTA---------------------
i canFam3.chr30             C 0 C 0
e papAnu2.JH685126              41701    0 +    130206 C
e rheMac3.chr7              108532486    0 - 170124641 C

a score=8074.000000
s hg38.chr15_KI270850v1_alt    201835 21 +    430880 ttttttttttttttttttttt
s panTro4.chr15              17724896 12 -  99548318 TTTTTTTTTTTT---------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10063393  9 +  10928107 ---TTTTTTTTT---------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102155986 11 + 121039945 TTATTTTTTTA----------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358624 21 - 171882078 ttttttttttttttttttttt
i macFas5.chr7              I 4241 C 0
s chlSab2.chr29              21074197 21 -  24206276 ttttttttttttttttttttt
i chlSab2.chr29             C 0 I 217
s calJac3.chr10              18025225 10 + 132174527 tttttttttt-----------
i calJac3.chr10             I 14 C 0
s mm10.chr9                  55191918 12 + 124595110 TTTTTTTGTGAT---------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62495 11 -  40214260 -TTCTCTTTGAT---------
i canFam3.chr30             C 0 C 0
e papAnu2.JH685126              41701  0 +    130206 C
e rheMac3.chr7              108532486  0 - 170124641 C

a score=372184.000000
s hg38.chr15_KI270850v1_alt    201856 355 +    430880 AGTTTAAAAAA-attttttgtagagatgaggtctcactatgttgctctggctgttcttgaactcctgggctcaagtgatcctcccaccttgccctcccaaggtgctgggatgacaggcatga-gctgctgtgcctggGCTACGTTTTTTTTTTT-------AATATCgcgtgcaccagaatcatttggagagctagtcccagggtttctga-ttaagtaggcctgtggtgtt------gcctgagcatt-------tacgtttttaagaagttcccaggtgaaactgatactgttgttctggggccta-catctg-gaaccactgGTTATAAAGCATTATGTTGTTGATAGGTAGAGATTTTAGTG----Ttatatatatgcat
s panTro4.chr15              17724908 355 -  99548318 AGTTTAAAAAA--TGttttgtagagatgaggtctcactatgttgctctggctgttcttgaactcctgggctcaagtgatcctcccaccttgccctcccaaggtgctgggatgacaggcatga-gctgctgtgcctggGCTACATTTTTTTTTTTTT-----AATATagtgtgcaccagaatcatttggagagctagtcccagggtttcaga-ttcagtaggtctgtggtgtt------gcctgagcatt-------tacatttttaagaagttcccaggtgaaactgatactgttgttctggggccta-catctg-gaaccactgGTTATAAAGCATTATGTTGTTGATAGGTAGAGATTTTAGTG----TTAT-tatatgcat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10063402 347 +  10928107 AGTTTAAAAAtttttttttacagagatgaggtctcactatgttgctctggctgttgttgaactcctgggctcaagtgatcctcccaccttgtcctcccaaggtgctgggatgacaggcatga-gctgctgtgcctggccTACATTTTTTTTTT--------AATATagtgtgcaccagaatcatttggagagctagtcccagggtttctga-ttcagtaggtctgtggtgtt------gcctgagcatt-------tacatttttaagacattcccaggtgaaggtgatgttgttgttctggggccta-catctg-gaaccactgGTTATAAAGCATTACCTTGTTGATAGATAGAGATTTTAGTG----ATat--------at
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102155997 361 + 121039945 AGTTTAAAAAA-attttttgtagagatgaggtctcactatgttgctctggctgttcttgaactcctgagctcaagtgatcctcccaccttgccctcccaaggtgctgggatgacaggcgtga-gctgcagtgcctggGCTACTTTTTTTTgttttt-tttaaatatagtgtgcaccagagtcatttggagagctagtcccagggtttctga-ttcagaaggtctgtggtatt------gcctgagcatt-------tacatttttaagaagttcccaggtgaaactgataccgttgttctggggccta-cgtctg-gaaccactgGTTATAAAGCATTATGTTGTTGATAGGTAGAGATTTTAGTG----Ttatatatatgtgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358645 340 - 171882078 AGTTTAAAAAt-tttttttatag-gattaagtctcactatgttgctctggctgttcttgaactcctgggttcaagcgatccacccaccttgccctcccaaagtgctgggatgacaggcatga-gcagctgtgcctggccTACATTTTTTTTT---------AATACagtgtgcaccagaatcatttggagagctagtcccagggtttctga-ttcagtaggtctatggtgtt------gcctgagcatt-------tacatttttaagaagttcccaggtgaagctgatgctgttgttctggggccca-catctg-aaaccgttgGTTATAAATCATTATGTTGTTGATAGGTAGAGATTTTAGTG----------------at
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18025235 333 + 132174527 ------------------aatagagacaaggtttcactatgttgccctgactggtcttgaactcctgggctcaagcgatcctcccaccttggcctcccaaaatgctgggataacaggcatgaggctactgtgcctggccTACattttttttttttttttttaatatagcgtgcaccagaatcatttggagagttagtctcagtgtttgtgatttcagtaggtctgtggtggg------gcccaagtgtt-------tacattttgaagaagtttccaggtgaagttgatgctgttgttctggggccta-cgtctg-gaaccattgGTTATAAAGCGTTATGTTGTTGATAGGTAGAGTTTTTAATG------------------
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55191930 221 + 124595110 -----------------------------------AGTATGTGTCAGAGTCCTTTGcagaact----gtctggagc----------------------------ctgggaggtcagg------attgctggacttga------------------------------------------------------------cacaggattttgtg-tcaggtaggt---tgaaggg------gcttgagaact-------tacctttctgagaagttctcaactgaaactgata------gtttggggtcca-cattca-caaccacAGG-TACAAATTAC----TTACTTATAAGCAGACATCCTAATGGAGTTTATTTATATGTGT
i mm10.chr9                 C 0 I 164
s canFam3.chr30                 62506 225 -  40214260 -------------------------------------agtgtgcatcagaatcatttgga------gggctag------------------------ctaaatgctagg-----aggcctag-aatgctgggcttcac-----------------------------------------------------------cccaaggcttctaa-ttcactaggtctgggatgtgggaaaaggctgagaatttgcattctacatttctaagatggtctcaggtgaagctgatgttgctagtttgggaaccatcatttgagaaccattgGTTATGAACTATTATGTTATCAGTA-----AGAGTTTA---------------------
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074218 217 -  24206276 I
e papAnu2.JH685126              41701   0 +    130206 C
e rheMac3.chr7              108532486   0 - 170124641 C

a score=57672.000000
s hg38.chr15_KI270850v1_alt    202211 86 +    430880 atatacacatatatacacacacacacatatttatacatacacacacacatatatatat--tcatacatac-TTTTTTATCATAAAAACC
s panTro4.chr15              17725263 88 -  99548318 atatacatatatatatacacacacacatatttacacatatacacacacatatatatatattcatacatac-TTTTTTATCATAAAAACC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10063749 85 +  10928107 atatatatatacacacacacacgcacatatttacacatacacacacacatatatatac--acatacatac--TTTTTATCATAAAAACC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102156358 89 + 121039945 atatatatacatatgtacacacacacatatttacatgtacacacacacacatatatatattcatacataCTTTTTTTATCATAAAAACC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358985 78 - 171882078 atatgtgtatacacacacacacatatatatttacacatacacacacacacatatatac----------ac-aTTTTAATCATAAAAACC
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18025568 57 + 132174527 ------------ATTCATACATACACATATTTATACATATACACACACACATG------------------CTTTTTACCATTAAAA--
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 62731 41 -  40214260 TTATGT-----------------CTCCTGtttttatatat-------------------------------tttaccattaaaaaaaac
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55192151 164 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e papAnu2.JH685126              41701  0 +    130206 C
e rheMac3.chr7              108532486  0 - 170124641 C

a score=307479.000000
s hg38.chr15_KI270850v1_alt    202297 191 +    430880 AAAGGTTTTTCAAATGTAAATTGTGATTGAAGGTTTAGAGAATGTTATGATTACAGAGTGGTCCCCCCACATACCTGTAATCCTAATTAGTACTTCTAGGAATAATCATGGGAAATCCCATGGACCTATGGAGCTGG----CTAATTACTTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTGT
s panTro4.chr15              17725351 189 -  99548318 AAAGGTTTTTCAAATGTAAATTGTGATTGAAGGTTTAGAGAATGTTATGATTACAGAGTGGTCCCC--ACATACCTGTGATCCTAATTAGTACTTCTAGGAATAATCATGGGAAATCTCATGGACCTATGGAGCTGG----CTGATTACTTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10063834 189 +  10928107 AAAGGTTTTTCAAATGTAAATTGTGATTGAAGGTTTAGAGAATGTTATGATTATAGAGTGTTCTCC--ACATGCCTGTGATCCTAATTAGTACTTCTAGGAATAATCATGGGAAATCTCATGGACCTATGGAGCTGG----CTAATTACTTCTAGAGGTGATAGTTGCTGTGTAGTAGAATCAAATGGTAATTGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102156447 189 + 121039945 AAAGGTTTTTCAAATGTAAATTGTGATTGAAGGTTTAGAGAATGTTATGATTACAGAGTGGTCCCC--ACATACCTGTGATCCTAATTAGTACTTCTAGGAATAGTCATGGGAAATCTCATGGACCTATGGAGCTGG----CTAATTACTTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359063 189 - 171882078 AAAGGTTTTTCAAACGTAAATTGTGACTGAAGGTTTAGAGAATGTTACGATTACAGAGTGGTCCCC--ACATGCCTGTGATCCTAACTGGTACTTCTAGGAATAATCATGGGAAGTCTCATGGACCTGTGGAGCTGG----CTAATTACTTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTGT
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18025625 193 + 132174527 AAATGTTTTTCAAATGTAAATTGTGATTGAGGATTTAGAGAATGTTATGATTAGAGAGTGGTCCCC--ACATGCTTGTGATCCTATTTGGTACTTCTAGAAATAATCACAGGAAATCCCATGGACCTATGGAGCTGGCTGTCTAATTACTTCTAGAGGTAATAGTTGCAGTTTAGTAGAGTCAAATGGTAATTGT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55192315 173 + 124595110 AAATGTTTTTCAAATATAAACCACGCTTGAGGATTTCAGGAAAGTTTCCGTTAC--TGTGGTTCTC--ACAGGCCTGTGATGCTGAGT-GTGGTCACAGTGATAATCC--GGTAACCCGAGGCAGCTGTGGAG--------CTCATCTCTGCATAA----ATAGTTAC---TTAATACAATTGACTGGTGATTGT
i mm10.chr9                 I 164 C 0
s canFam3.chr30                 62772 167 -  40214260 aaatgtttttaaaatataaattGTGATTGAGGATTTAGAGAAAG-----ATTTGAGAATGATTCTC--ACAAGCCTG------------ATACCT---GGAATAATCACAGAAAATCTCATGGCCCTGTGGACCTGGCCATCTAATTCCTTGCAAAGGTGGTGGTTTCAGTTTGGTAGAATCAAATTGT------
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074218 217 -  24206276 I
e papAnu2.JH685126              41701   0 +    130206 C
e rheMac3.chr7              108532486   0 - 170124641 C

a score=271172.000000
s hg38.chr15_KI270850v1_alt    202488 124 +    430880 CATGCAGTTTTACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-G-TGGGGAAAAGATCACAGTTTG---CTAGGTTAGTTATGAAATGTTCTGTAGACCCTCAAAGTATGAGC
s panTro4.chr15              17725540 123 -  99548318 CATGCTGTTTTACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-G-TGGGGAAAAG-TCACAGTTTG---CTAGGTTAGTTATGAAATGTTCTGTAGACCCTTAAAGTATGAGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10064023 124 +  10928107 CGTGCAGTTTTACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-G-TTGGGAAAAGATCACAGTTTG---CTAGGTTAGTTATGAAATGTTCTGTAGACCCTCAAAGTATGAGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102156636 124 + 121039945 CATGCAGTTTTACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-G-TGGGGAAAGGTTCACAGTTTG---CTAGGTTAGTTATGAAATGTTCCGTAGACCCTCAAAGTATGAGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359252 124 - 171882078 CATGCAGTTTTACTGAAATTTGTATTGCTTCTTTTTTGTGATTGAAAGTCTTACAGAA-G-TGGGGAAAAGATCACGGTTTG---CTAGGTTAGTTGTGAAATGTTCTGTAGACCCTGAAAGTATGAGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41701 124 +    130206 CATGCAGTTTTACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-G-TGGGGTAAAGGTCACAGTGTA---CTAGGTTAGTTATGAAATGTTCTGTAGACCCTCAAAATATGAGC
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18025818 124 + 132174527 CATGCAATTTTACTAAAATTCATATTGCTTC-TTTTTATGGTTGGAAATCTTATAGAAGG-TAGAGAAAAGATCACAATTTG---TTAGGTTAGTTATGAAATGTTCTGTAGACCCTCAAAGTATGAAC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55192488 110 + 124595110 CATACATCCGTACTGAATTTTGTCCTGCTTC-TTTTTGTAGTTATGAAGCTATGGGAG-G-CATGACAAAGATC-------------AAGTTAATTATGATATATTATACAATCCCCCA---TATGGGC
i mm10.chr9                 C 0 I 585
s canFam3.chr30                 62939 125 -  40214260 CTTGCATTTTTATTGAAGCTTGTATTGCT---TTTTTGTTATTAGAAGTCTTATGAAA-GATGGCGAAAAGATCAGAATTGGTACCTAGGTTAGTTATTAAATGTTCTGCAGGTCCTTAAATTAGGAGC
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486   0 - 170124641 C

a score=339512.000000
s hg38.chr15_KI270850v1_alt    202612 166 +    430880 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTATGTGACATAATCCACATTATGGTGATTAAAATCTAA------------------------------ATATCTCCAGCCCTTACTTTGATCATTTCTATGGTTGAGATAGTAATAGTTGCATTTAGGGTAAAAATATGAGTGACTA
s panTro4.chr15              17725663 166 -  99548318 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTACGTGACATAATCCACCTTATGGTGATTAAAATCTAA------------------------------ATATCTCCAGCCCTTACTTTGATCATTTCTATGGTTGAGATAGTAATAGTTGCATTTAGGGTAAAAATATGAGTGACTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10064147 166 +  10928107 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTATGTGACATAATCCACATTATGGTGATTAAAATCTAA------------------------------ATATCTCCAGCCCTTACTTTGATCATTTCTACGGTTGAGATGGTAATAGTTGCATTTAGGGTAAAAATATGAGTGACTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102156760 165 + 121039945 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTATGTGACATAATCCACATTGTGGTGATTAAAATCTAA------------------------------ATATCTGCAGCCCTTACTTTGAT-ATTTCTATGGTTGAGATAGTAATAGTTGCATTTAGGGTAAAAATATGAGTGACTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359376 164 - 171882078 AATTTAAAATAA--TGAGGATTTTCAAACACTCAGCTGACTAATTCCATTATGTGACATAATCCACATTATGGTGATTAAAATCTAA------------------------------ATATCTCCAGCCCTTACTTTGATCATTTCTATGGTTGAGATAGTAATAGTTGCATTTAGGGTAAAAATATGAGTGACTA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41825 166 +    130206 AATTTAAAGTAACTTGAGGATTTTCAAACATTCAGCTGACTAATTCCATTATGTGACATAATCCACATTATGGTGTTTAAAATCTAA------------------------------ATATCTCCAGCCCTTACTTTGATCATTTCTATAGTTGAGATAGTAATAGTTGCATTTAGGGTAAAAATATGAGTGACTA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18025942 160 + 132174527 AGTTTAAA-----TTGAGAATTTTCGAACACTCAGCTGACTAATTCTATTATATGCCATAATCTATATTATGGTGATTAAAATCTAA------------------------------ATATATCCAGCCCTTACTTTGATCATTTCTATGGCTGAGATAGTAATAGTTGCA-TTAGGGTAAAAATATGAGTGACTA
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 63064 193 -  40214260 -AATTAAACTAATTAGAGAATTGTGAAATTGTAAATTGACCAATTCAACCTTGTGAGGTAATCCATATTATGGTG--TAAGATCTAAAAATCTTCAGTCCaaaaaataaaaaaaaataaatCTTCAGTCCTTACTTTGATCATTGCTATTGTTGACATAGTAATAATTTCATTTAGATAAAAAATATAGATGGCTA
i canFam3.chr30             C 0 I 1
e mm10.chr9                  55192598 585 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486   0 - 170124641 C

a score=1019514.000000
s hg38.chr15_KI270850v1_alt    202778 699 +    430880 CTTCACACTTCAGAACTTT-CTCCAGAAGAGCTTTGTTGCTACAGTTATTTTTAG--TTGTATTTGCTTTACATACTTATGTATGTGTTTTGGGGGCTAAGATCCTGTTAAGAATC---A-TTCTGCATAATCAGAATACATATTAAC----TATGGTGCTGATACTACGGAATAGTTGTCTGGACATGATATCCATGTGTAAAAGTTCAGAGAAACAAGAA--------------------------------GTGTGGGTTTAAAAAAAAAAAA----------ACCTTAGTATTACATGTGGATGTGCTGAGCTCATTTTGAGTTTCCCCACACAGTAAAGGAATATTGGTTTTATTATTTAATTACTTAAttttattgagacagggtctttgtctgttgccccaggctggagtg-agtggtgcaatcacagctcactgcaacctctgcctcccgggctcaagccatcctgccacctcagcctcctgagaagctgggactgcaggcatatgccagcacaccaagctaatttttgtatttttgatagagacagggtttcaccatgttgctca-tgttggtctcgaactcccaggctaaagcgatccaccccactgagactgacaaagtattaggattatgggtctgagccactttgcccagccCAATGTTGTTTGTTAAAATtttttatttatttacttatc------ttttgcttttctgttttaatttttaaatttctatttttt-cAATATTGTGT
s panTro4.chr15              17725829 698 -  99548318 CTTCAGACTTCAGAACTTTTCTCCAGAAGAGCTTTGTTGCTACAGTTATTTTTAG--TTGTATTTGCTTTACATACTTATGTATGTGTTTTGGGGGCTAAGATCCTGTTAAGAATC---A-TTCTGTATAATCAGAATACATATTAAC----TGTGGTGCTGATACTACGGAATAGTTGTCTGGACATGATATCCGTGTGTAAAAGTTCAGAGAAACAAGAA--------------------------------GTGTGGGTTTAAAAAAAAAA-------------CCTTAGTATTACATGTGGATGTGCTGAGCTCATTTTGAGTTTCTCCACACAGTAAAGGAATATTGGTTTTATTATTTAATTACTTAAttttattgagacggggtctttctctgttgccccaggctggagtg-agtggtgcaatcacagctcactgcaacctctgcctcccgggctcaagccatcctgccacctcagcctcctgagaagctgggactgcaggcgtatgccagcataccaagctaatttttgtatttttgatagagacagggtttcaccatgttgctca-tgttggtcttgaactcccaggctaaagcgatccaccctgctgagactgacaaagtattaggattatgggtctgagccactttgcccagccCAATGTTGTTTGttaaaattttttatttatttaCTTATC------TTTTGCTTTTCTGTTTTAATTTTTAAATTTCTATTTTTTTCAATTTTGTGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10064313 694 +  10928107 CTTCAGATTTCAAAACCTT-CTCCAGAAGAGCTTTGTCGCTACAGTTATTTTTAG--TTGTATTTGCTTTACATGCTTATGTATGTGTTCTGGGTGCTAACATCCT-TTAAGAATC---A-TTCTGCATAATCAGAATACATATTAAC----TGTGATGTTGATACTGCAGAATAGTTATCTGGACATGATATCCATCTGTAAAAGCTCAGAGAAACAAAAG--------------------------------GTGTGGGTTTAAAAAAAAAAAA----------ACCTTGGTATTACATATGGATGTGCTGAGCTCATTTTGAGTTTCCCCACACAATAAAGGAATACTGGttttattatttaattaattaattttattgagacagggtctttctctgttgccataggctggagtg-agtgatgcaatcacagctcactgcaacctctgcctcccgggctcaagccatcctcccacctcagcctcctgagtagctggggccacaggtgtatgctggcacaccaagctaatttttgtatttttaatagagacagggtttcactatgttgctca-tgttggtcttgaactcccaggctaaagtgatccaccccactcagactgacaaagtattaggattatgggtctgagccactttgcccagcccaatattgtttgttaaaattttttatttatttaCTTATC------TTTTGCTATTC-----TAATTTTTAAATTTCTATTTTTTTCAATTTCGTGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102156925 697 + 121039945 CTTCAGACTTCAGAACTTT-CTCCAGAAGAGCTTTGTTGCTACAGTTATTTTTAG--TTGTATTTGCTTTACATACTTATGTATGTGTTTTGGGGGCTAAGATCCTGTTAAGAATC---A-CTCTGTATGATCAGAACACATATTAAC----TGTGGTGTTGATACTACGGAATAGTTATCTGGACATGATATCCATGTGTAAAAGCTCAGAGAAACAAGAA--------------------------------GTGTGGGTTTTAAAAAAAAT-A----------ACCTTAGTATTACATACGGATGTGCTGAGCTCATTTCGAGTTTCCCCACACAGTAAAGGAATATTGGTtttattatttaattaattaattttattgagacagggtctttctctgttgccccaggctggagtg-agtggtgcagtcacagctcactgcaacctctgcctcccgggctcaagccatcctcccacctcagcctcctgagaagct-ggactgcaggcctatgccaccacagcaagctaatttttgtatttttgacagagacagggtttcaccatgttgctca-tgttggtctcgaactcccaggctaaagcgatccaccccgctgagactgacaaagtattaggattatgggtctgagccgctttgcccagcccaatgttgtttgttaaaattttttatttatttacttatc------ttttgcttttctgttttaatttttaaatttctatttttt-cAATATTGTGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359540 701 - 171882078 CTTCTGACTTCAGAACTTT-CTCCAGAAGAGCTTTGTTGCTACAGTTATTTTTAC--TTGTATTTGAGGTACATGCTTATGTATGTGTTTTGGGGGCTAAGATCCTGTTAAGAATCATTA-TTCTGTATAATCAAAATACATATTAAC----TGTGGTGTTGGTACTATAGAATACTTATCTGGACATGATATCCACCGGTAAA-----AGAGAAAAAA-AA--------------------------------CTGTGGGTTAAAAAAAAAAA------------ACCTTAGTATTACGTATGGATGTGCCAAGCTCATTTTGAGTTTCCCCACACAGGAAATGAATATTGGTTTTATTATTTAATTAATTAAttttattgagacagggtcttgctgtgttgccccaggctggagtg-agtggtgcaatcacagctcactgcaacctctgccttccgggctcaaatcatcctcccacctcagcctcctgagtagctggaaccacaggtgtatgccaccaggccaagctaatttttgtatttttgatagagacagggtttcaccatgttgcttg-tgttggtcttgaactcctaggctgaagcaatccaccccactcagactcaaaaagtattaagactatgggtctgagccactttgcccagccCAATATTGTTTGTTAAAATtttttatttatttacttatcttttgcttttgtttttctgttttaatttttagatttctatttttttcaatattgtgt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              41991 715 +    130206 CTTCAGACTACAGAACTCT-CTCCAGAAGAGTTTTGTTGCTATAGTTATTTTTTCAGTTGTATTTCCTTTGCATGCTTATGTATGTGTTTTGGGGGCTAACATCCTGTTAAGAATC---A-TTCTGTATAATCAGAATACATATTAAC----TTAAGTGCTGATACTACAGAATAGTTATCTGGACATGATATCCATCTGTAAAAGCTCAGAGAAACAA-AA--------------------------------GtgtgggtaaaaaaaaaaaaaaacagaaaaacaccttAGTATTACATACGGATGTGCTGAGCTCATTTTGAGTTTCCCCACACAGTAAAGAAatattggttttattatttacttaattaattttattgagacaggatcttgctctgttgccccaa--tGGAGTg-ggtggtgcaatcactgctcactgcaatctctgcctcccgggctcaagccatcctcccacctcagcctcttgagtagttgggaccgcaggcgtatgccaccacaccaagcaaatgtttgcatttttgatagagacagggtttcatcatgttgctca-tgTTGATCTCCAACTCCCTGGCTAAAGCGATCCACCCCGCTCAGACTCACAATGTATTAGGTTTATGGGTCTCAGCCACTTTACCCAGCCCAAtattgtttgctaaaattttgtatttatttacctatcttttaattttgcttttctgttttaatttttaaatttctatttttttcaatattgcgt
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18026102 685 + 132174527 CTTCAGACTTCACAACTTT-CCCCAGAAGAGCTGTGTTCCTGCGATTATTTTTAG--TTGTATTTGCTTTACATGCTTATGTATGTGTTTTGGGGGCTAACATCCTGTTAAGAATT---ATTTCTGTGTAGTCAGAGGACATATTAACATTTTATGGTGTTGATACTACAGAATAGTTATTTGGGCATGATGTCCATCTGTAAA-GCTTAGGGAAACAAAGAGCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTA---------------------ATGTTGGTATTACATATGGATATGCTGAGCTCATTTTGAGTTCTGCCACATGGTAAAGCAATA---------------------TTAtttttattgagacagggtcttgctctgttgcc-caggctggaatacagtggtgcaatcatggctcactgcattctctgcctcctgggctcaggctgtcctcccacctcagcctcctgagtagctggg-----------atgccaccatgcccagctaagttttatatttttggtagagatggggttttgccatgttgcccagttttgttcttgaactcctgggatgaagccattcacccacctcagccttgcaa--tactaggattacagctgtgagccaccgtgtctggccCAattttgttttttaaaattatttatttacttattt---------ttttgtttctgcttttttgttttttaatt----ttattttcagttttgttt
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257   1 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486   0 - 170124641 C

a score=160779.000000
s hg38.chr15_KI270850v1_alt    203477 81 +    430880 TTTAAGAGTCTACTTACCCGACGCCTGCAGTCTAAT-CTTTGCCATATCTTCCCAAATGTTCTGTGAGTGCTAATATAGTGG
s panTro4.chr15              17726527 81 -  99548318 TTTAAGAGTTTACTTACCTGACGCCTGCAGCCTAAT-CTTTGCCATATCTCCCCAAATGTTCTGTGAGTGCTAATATAGTGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10065007 81 +  10928107 TTTAAGAGTTTACTTACCTGACGCCTGCAGCCTAAT-CTTTGCCATATCTCCCCAAATGTTCTGTGAGTGCTAATATAGTGG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102157622 81 + 121039945 TTTAAGAGTTTACTTACCTGATGCCTGCAGCCTAAT-CTTTGGCATATCTCCCCAAATGTTCTGTGAGTGCTAATATAGTGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360241 81 - 171882078 ttTAAGAGTTTACTTACCTGAGGCCTGCAGCCTAAT-CTTTGCCATATCTCCCCAAGTGTTCTGTGAGTGCTAATATAGTGG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              42706 81 +    130206 tttAAGAGTTTACTTACCTGACGCCTGCAGCCTAAT-CTTTGCCATATCTCCCCAAGTGTTCTGTGAGTGCTAATATTGTGG
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18026787 81 + 132174527 ctTAAGGGTTTACTTACCTGACACCTGTAGCCTAAT-CTTTGCCATATCCCCCAAAATATCCTGTGAGTGCTAATATAGTGG
i calJac3.chr10             C 0 I 327
s mm10.chr9                  55193183 75 + 124595110 TTTAACAGATGACTTAGGTGGTCCCTGCAGCCTGCTCCTTTGTTACATCTTCCAGAAAGTTATGTG-------GTATATTAG
i mm10.chr9                 I 585 C 0
e canFam3.chr30                 63257  1 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486  0 - 170124641 C

a score=1147234.000000
s hg38.chr15_KI270850v1_alt    203558 651 +    430880 TATGGTAATAGATATTTGTTTTGTGGAGATTGCAAGGTTTTGGGGAAC-CAGGTTCAA-AATGTCTTTTACCAAAGGACTTCTTGG-AGCCTTAATGCCATTTTC-------------------------------------TGTTTTTCCCAAATTTGTTTATTAGTGTT------------CCTGACAGCATCTCAGAGGATGGTGTCCTCTGGCTTACTCTCTGGGAAATGCTGCTCTGTTGGAAATCCGGAGTTCTGAGTGATCCCCATGCGTTTTCTGCTGCAGAGCAGGACATGCTGAAGTGATTCCTTCGTGAGCAGATGTTAGAGGTCTCCCTTTGACAGCTTGTTACAAAGTTGATCACGAATATACTATTACGGTGAGT-GGAAGTCCCAGGTTGGGTGTG---AAGCAGAGTTGTTTAGAATTGTGTAC-----TATTTTGTTACCTTTAAAGCTTCTC-TAGGCTG-TTTTGGTTTTGGCAGTAAAATTGCTATAAAAAGTACTTCTCTTGGCATACAACCTAATGGTCAGTTTTGGAAGTTCAGTGTTAAGTAACCCAGCCAAATACTTACGTATACAAAATAAACACAAGACTGAAAAATAGTAAATGTTTAACCTTTG---------CTCACTACAGCAGGCTTTTTACTAGCCA--CCAAGCCA------TAGTTCTTTTGTTTTTCATAGTTGAATGTTAAAATGT-----CTTTTTAA
s panTro4.chr15              17726608 655 -  99548318 TATGGTAATAGATATTTGTTTTGTGGGGATTGCAAGGTTTTGGGGAAGGCAGCTTCAA-AATGTCTTTTACCAAAGGACTTCTTGG-AGCCTTAATGCCATTTTC-------------------------------------TATTTTTCCCAAATTTGTTTATTAGTGTT------------CCTGACA---TCTCAGAGGATGGTGTCTTCTGGCTTACTCT--GGGAAATGCTGCTCTGTTGGAAATCTGGAGTTCTAAGTGATCCCCATGCGTTTTCTGCTGCAGAGCAGGACATGCTGAAGTGATTCCTTCGTGAGCAGATATCAGAGGTCTCCCTTTGACAGCTTGTTACAAAGTTGATCACAAATATACTATTACGGGGAGT-GGAAGTCCCAGGTTGGGTGTG---AAGCAGAGTTGTTTAGAATTGTGTAC-----TATTTTGTTACCTTTAAATCTTTTC-TAGGCTG-TTTTGGTTTTGGCAGTAAAATTGCTATAAAAAGTACTTCTCTTGGCATACAACCTAATGGTCAGTTTTGGAAGTTCAGTGTTAGGTAACCCAGCCAAATACTTACGTATACAAAATAAACACAAGACTGAAAAATAGTAAATGTTTAACCTTTGTGTCTCTTGCTCACTACAGCAG-CCTTTAACTAGCCA--CCAAGCCA------TAGTTCTTTTGTTTGTCATAGTTGAATTTCAAAATGT-----CTTTTTAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10065088 662 +  10928107 TATGGTAATAGATATTTGTTTTGTGGGGATTGCAAGGTTTTGGGGAAGCCAGCTTCAA-AATTTCTTTTACCAAAGGG-TTCTTGG-AGCCTTAATGCCATTTTC-------------------------------------TATTTTTCCAAAATTTGTTTATTAGTGTT------------CCTGACAGCACCTCAGAGGATGGTGTCCTCTGGCTTACTCTCTGGGAAATGCTGCTCTGTTGGAAATCCAGAGTTCTGAGTGATTCTCATGTGTTTTCTGCTACAGA--AGGACATGCTGAAGTGATTCCTTCATGAGCAGATGTTAGAGGTCTCCCTCTGACAGCCTGTTACAAAGTTGATCACAAATATACTATTACAGTGATT-GGAAGTCCCAGGTTGGGTGTG---AAGCAGAGTTGTTTAGAATTGTGTACTGTTTTATTTTGTTACCTTTAAAGCTTCTC-TAGGCTG-TTTTGGTTTTGGCAGTAAAATTGCTATAAAAAGTACTTCTCTTGGCATAAAACCTCATGGTCAGTTTTGGAAGTTCAGTGTTAGGTAACCCAGCCAAATACTTACATATACAAAATAAACACAAGACTGAAAAATAGTAAATGTTTAACCTTTGTGTCTCTTGTTCACTACACCAG-CCTTTTACTAGCCA--ACAAGCCA------TAGTTCTTTTGTTTTTCATAGATGAATGTTAAAATGT-----CTTTTTAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102157703 660 + 121039945 TATGGTAATAGATATTTGTTTTGTGGGGATTGCAAGGTTTTGGGGAAGCCAGCTTCAA-AATGTCTTTTACCAAAGGACTTCTTGG-AGCCTTAGTGCCATTTTC-------------------------------------TGTTTTTCCCAAATATGTTTATTAGTGTT------------CCTGACAGCATCTCAGAAGATGGTGTCCTCTGGCTTACTCTCTGGGAAATGCTGCTCTGCTGGAAATCCGGAGTTCTGAGTGATCCCCATGCGTTTTCTGCTGCAGAGCAGGACATGCTGAAGTGATTCCTTCCTGAGCAGATGTCAGAGGTCTCCCTTTGACAGCTTGTTACAAAGTTGATCACAAATATACTATTACGGTGAGT-GGAAGTCCCAGGTTGGGTGTG---AAGCACAGTTGTTCAGAATTGTGTTC-----TATTTTGTTACCTTTAAAGCTTCTC-TAGGCTG-TTTTGGTTTTGGCAGTGAGATTGCTTTAAAAAGTACTTCTCTTGGCATAAAACCTAATGGTCAGTTTTGGAAGTTCAGTGTTAGGTAACCCAGCCAAATACTTACATATACAAAATAAACACAAGACTGAAAAATAGTAAATGTTTAACCTTTGTGTCTCTTGCTCACTACCGCAG-CCTTTTACTAGCCA--CCAAGCCA------TAGTTCTTTTGTTTTTCATAGTTGAATGTTAAAATGT-----CTTTTTAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360322 670 - 171882078 TATGTTCATAGATATTTGTTTTGTGGGGATTGCAAGGATTTGGGGAAGCCAGGTTCAA-AGTGTCTTTTACCAAAGGACTTCTTGGAAGCCTTAATGCCATTTTC-------------------------------------TGTTTTTCCCAAATTTGTTAATTAGTGCT------------CCTGACAGCATCTCAGAGGACAATGCCCTCTGGCTTACTCTCTAGGAAATGCTGCTCTGTTGGAAATCCGGAGTTCTGAGTGATTCCCATGTGTTTTCTGCTGCACAGCAGGACATGCTGAAGTGATTCCTTCATGAGCAGATGTTAGAGGTCTCCTTTTGACAGCTTGTTACAAAATTGATCACAAATATACTATTA-GGTGAGT-GTAAGTCCCCGGTTGGGTGTG---AAGCAGAGTTGTTTAGAATTGTGTACTGTTTTATTTTGTTACCTTTAAATCTTCTC-TGGGCTG-TTTTGGTTTCAGCAGTAAAATTGCTATAAAAAGTACTTCTCTTGGCATAAAACCTCATGGTCAGTTTTGGAAGTTCAGTGTTAGGTAACCCAGCCAAATACTTACGTATACAAAATAAACACAAGACTGAAAAATAGCAAATGTTTAACCTTTGTGTCTCTTACTCACCATACCAG-CCTTTTACTAGCCA--CCAAGCCA------TAGTTCTTTTGTTTTTCATAGTTGAATGTTAAAATGTAAGGGCTTTTTAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              42787 671 +    130206 AATGTTAATAGATATTTGTTTTGTGGGGATTGCAAGGTTCGGGGGAAACCAGGTTCAA-AATGTCTTGTACCAAAGGACTTCCTGG-AGCCTTAttgccattttc-------------------------------------tatttttcccaaaTTCATTTACTAGTGCT------------TCTGACAGCATCTCAGAGGATGCTGTCCTCTGGCTTACTCTCTGGGAAATGCTGCTCTGTTGGAAATCCAGAGTTCTGAGTGATTCCCAGGTGTCTTCTGCTGCACAGCAGGACATGCTGAAGTGATTCCTTCATGAGCAGATGTTAGAGATCTCCTTTTGACAGCTTGTTACAAAGTGGATCACAAATATACTATtacagtgagt-ggaagtcccacgtTGGGTGTG---AAGCAGAGTTGTTTAGAATTGtgtactgttttattttgttacctTTAAAGCTTCTC-TAGGCTG-CTTTGGTTTCTGCAGGAAAATTGCTATAAAAAGTACTTCTCTTGGTATAAAACCTCATGGTCAGTTTTGCAAGTTCAGTGTTAGGTAACCCAGCCGAATACTTATGTATGCAAAATAAACACAAGACtgaaaaagagtaaatatttaaCCTTTGTGTCTCTTACTCACTACACCAG-CCTTTTACTAGCCT--CCAAGACAttttttttGCTCGTTTGTTTTTCATGGTTGAATGTTCAAATGC-----CTTTTTAA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18027195 672 + 132174527 TTTGTTAATAGATGTTTGTTTTGAGGGGATTGCAAGGTTTTGGGAAAGCCAGGTTCAA-AATATCTTTTACCAAAGGACTTCTAGG-AGACTTAATGCTGttttctt--------------------------ttttttttttttttttttCAAATTTGTTTAATAATTTA------------CATGATAGCTTCTCAGAGGATGGTGTGCTCTGGCTTACCCTCTGGGAAATGCTGCTCTGTTGGAAATTTCCAGTTTTGAGTGATTCCCACGTGTTTTCTGCTGCAGAGCAGGAAATGCTGAAGC-ATTCCCTCA-GAGCAGATGTTACAAGTCTCCTTTTGACACGTTGTTACAGAGTTGATCACAAGTGTAGTATTACAGTGAGT-GGAAGTCCCAGGTTGGGTTTG---AAACAGAGTTGTTTAGAATTGTGTACAGTTTTATTTTGTTACCTTTAAAGCTTCCC-TATACTGTTTTTAGATTGGGCAGTAAAATTGCTATAAAAAGTACTTCTTTTGTCATAAAACCTAATGAT-AGTTTTGGAAGTTGAATGTTAGGTAACTCAGCCAAATATTTACATATACAAAATAAACCCAAGACTGAAAAATAGTAAATTTTTAACCTTTCTGTCTCTTGTTTACAACACCAG-CCTTTTACTAGCCA--CTAAGCCA------TAGTTCTTAAGTTTTTCATAGTTTAATGTTAAAATAT-----C--TTTAA
i calJac3.chr10             I 327 C 0
s mm10.chr9                  55193258 636 + 124595110 -----------------GCCTTATGAACAT-------------------CAAGCTCAATGATACTCATTCCAAAGGGACTTGTTGA-AGACTTGGTGTGAATTTTTCCCCCCCACAAAGTCACTAAATAACAGCTCCTATTCTGTTTTCCACAAATCACTTAATAACTTCTAATTTTTTGTGGCCTGTTGGCATCTCAGAAGATGGCATCCTCTGGTTTACTGTTTGGGAAATGTTGCTCTTTCAGAAACCCAAAATCTTGAGCGATCCTC------------------AGCAAG----GCTGAAGTGATCCCTT-------AGACATCTTGCTTCTGCTTTTGGCAAACAGTTACAACGCTGATCACAAATG--CTGTTAGGCTGAGTGGGAAATCACACACTCAGAGGGCACACACAAAGATGTTTCAAGTTGTCAAG--TTTCATTTCGTTACCTTTAAACATTCCCGCATGC---TTCTGGGTTAGGCAGTG------------AAGGTAGTTTTTCTATCATAAAGCC-CATGGCTATTTTTGGAAGGAGAATATTAGGTAACCTAGCCAAATATTTACATACACAAAATAAACATAGGGTGGAAATATAGTGAATTTTAAACTTTTGTATCCCTTCCTCAGAACACCAG-CCCTTTCCTAGCCAAGTGTAACAA------CATTAATTT--TTTTTTACAGTTTAGTGTTGCTATAA-----CATTGTAA
i mm10.chr9                 C 0 I 813
e canFam3.chr30                 63257   1 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486   0 - 170124641 C

a score=56061.000000
s hg38.chr15_KI270850v1_alt    204209 37 +    430880 TGAAGCCCTTACTGATTGGGGAGAAAGGAC---ATAAGTA
s panTro4.chr15              17727263 40 -  99548318 TGAAGCCCTTCCTGATTGGGGAGAAAGGACGACATAAGTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10065750 37 +  10928107 TGAAGTCCTTCCTGATTGGGGAGAAAAGAC---ATAAGTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102158363 37 + 121039945 TGAAAGCCTTACTGATTGGGGAGAAAAGAC---ATAAGTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360992 37 - 171882078 TGAAGCCCTTACTGATTGGGGAGAAAAGAC---ATTAGCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              43458 37 +    130206 TGAAGCCCTTACTGAATGGGGAGAAAAGAC---ATAAGTA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18027867 37 + 132174527 TGAAACCTTTACTAATTGGGGAGAAATGAC---GTAACTA
i calJac3.chr10             C 0 I 324
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486  0 - 170124641 C

a score=171165.000000
s hg38.chr15_KI270850v1_alt    204246 116 +    430880 TTGTGCTTTAGTTTTATGTGCTGGTTTATAAAATTGTGTATGTTGACTCAATATCCCCATAAGCATAGGGAAAGGAAAACGGGTCA-TGTTTTGTTCAGAATCTTATTTGAGA--AAAA
s panTro4.chr15              17727303 116 -  99548318 TTGTGCTTTAGTTTTATTTGCTGGTTTATAAAATTGTGTATGTTGACTCAATATCCCCATAAGCATAGTGAAAGGAAAACAGGTCA-TTTTTTGTTCAGAATCTTATTTTAGA--AAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10065787 115 +  10928107 TTGTGCTTTAGTTTTATGTGCTGGTTTATATAATTGTGTATATTGACTCAATATTCCCATGAGCATAG-GAAAGGAAAATGGGTCA-TTTTTTCTTCAGAATCTTATTTCAGA--AAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102158400 116 + 121039945 TTGTGCTTTAGTTTTATGTGCTGGTTTATAAAATTGTGTATGTTGACTCAATATCCCCATAAGCATAGGGAAAGGAAAATGGGTCA-TTTTTTGTTCAGAATCTTATATGAGA--AAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361029 118 - 171882078 TTGTGCTTTAGTTTTATGCACTGGTTTATAAAATTGTGTATGTTGCCTCAATATTCCCATAAGCACAG-GAAAGGAAAATGGGTCATTTTTTTGTTCAGAATCTTACTTGAGGAAAAAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              43495 110 +    130206 TTCTGCTGTAATTTTATGCGCTggtttataaaattgtatatgttgACTCAATATTCCCATAAGTATAG-GAAAGGAAAACAGGTCA-TTTTTTGTTCagaat-----ttgagg--ggaa
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18028228 117 + 132174527 TTGTGCTTTAGTTTTATGCACTTGTTTATAAAATTGTGTGTGTTTACTCAGTATTCCCATAAACATGGGAAAAGGAAGGCAGGTCA-TTTTTTGTTCAAAATCTTATTTGAGA-GAAAA
i calJac3.chr10             I 324 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 63257   1 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486   0 - 170124641 C

a score=113737.000000
s hg38.chr15_KI270850v1_alt    204362 57 +    430880 AAAA-GATCAAAGAAAAGATTTGGATAAAAATCTGCAAATTCAGGATAAATGTATGAA
s panTro4.chr15              17727419 58 -  99548318 AAAAAGATCAAAGAAAAGATTTGCATAAAAATCTGCAAATTCAGGATAAATGTATGAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10065902 57 +  10928107 AAAT-GATCAAGGAAAAGATTTGGATAAAAATCTGCAAATTCAGGATAAATGTGTGAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102158516 58 + 121039945 AAAAAGATCAAAGAAAAGATTTGGATAAAAATCTGCAAATTCAGGATAAGTGTATGAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361147 58 - 171882078 AAAATGATCAAGGAAAAGATTTGGATAAAAATCTGCAAATTCAGGATAAATGTATGAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              43605 58 +    130206 aaaatgatCAAGGAAAGGATTTGGATAAAAATCTGCAAATTCAGGATGAatgtatgaa
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18028345 57 + 132174527 AAAATGATCAAGGAAAAGATTTAGA-AGAAATTTACAAATTCAGAATAAATATATAAA
i calJac3.chr10             C 0 I 329
s canFam3.chr30                 63258 57 -  40214260 -AAATGATTAAGGAAGAGATTTCAAAAAAATTTTGTCAATTCAGGATAAATGTATAAA
i canFam3.chr30             I 1 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486  0 - 170124641 C

a score=351259.000000
s hg38.chr15_KI270850v1_alt    204419 189 +    430880 --------------AACATTTTAAAATGTGATTATGAAATAGACCAGTATAGCTTTTCAACATTTTGTTGTAAGAATCCC--AAGAATGTAAG--TTTATGATC-TTAGTATACCACCTAG-AATCGAGACAAATACATGAAGTTATGAATCATGCCATTTTCAGTTTTAAAATCTGTTACATAGTT--TCTTCATTGATTCTTTTTTGCC
s panTro4.chr15              17727477 189 -  99548318 --------------AACATTTTAAAATGTGATTATAAAATAGACCAGTATAGCTTTTCAACATTTGGTTGTAAGAATCCC--AAGAATGTAAG--TTTATGATC-CTGGTATACCACCTAG-AATCGAGACAAATACATGAGGTTATGAATCATGCCATTTTCAGTTTTAAAATCTGTTACATAGTT--TCTTCATTGATTCTTTTTTGCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10065959 189 +  10928107 --------------AACACTTTAAAATGTGATTATAAAATGGACCAGTATAGCTTTTCAACATTTTGTTGTAAGAATCCC--AAGAATGTAAG--TTTATGATC-TTAGTATACCACCTAG-AATTGAGACAAATACATGAAGTTATGAATCATGTCATTTTCAGTTTTAAAATCTGTTACATAGTT--TCTTCATTGATTCTTTTTTGCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102158574 189 + 121039945 --------------AACATTTTAAAATGTGATTATAAAATAGACCCATATAGCTTTTCAACATTTTGTTGTAAGAATCCC--AAGAATGTAAG--TTTATGATC-TCAGTATACCACCTAG-AATCCAGACAAATACATGAAGTTATGAATCGTGCCATTTTCAGTTTTAAAATCTGTTACTTAGTT--TCTTCATTGATTCTTTTTTGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361205 189 - 171882078 --------------AACATTTGAAAATGTGATTATACAATGGACCAGTATAGCTTTTCAACATTTTGTTGTAAGAATGCC--AAGAATGTAAG--TGTATGATC-TTCGTATACCACCTAG-AATCGAGACAAATACATGAAGTTATGAGTCATGCCATTTTCAGTTTTAAAATCTCTCACATAGTT--TCTTCAGTGATTCTTTTTTGCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              43663 189 +    130206 --------------aatgttttaaaatgtgattataaaATGGACCAGTATagcttttcaacattttcttgtaAGAATTCC--AAGAATGTAAG--TGTATGATC-TTAGTATGTCACCTAG-AATTGAGACAAATACATGAAGTTATGAGTCATgccattttcacttttaaaatctcTCACATAGTT--tcttcattgattcttttttgcC
i papAnu2.JH685126          C 0 I 2181
s calJac3.chr10              18028731 179 + 132174527 --------------AACATTTTAAAATGTGA-TATAGAATTGACCAGTATAGCTTTTCAACATTTTATTGTAAGAATTCC--AAGAATTT--G--TTTATGACC-TTAGTTTACCACCTAG-AACAGAGACAAATACATGAAGTTATGAATAATGCCATTTTCAGTTTTAAAATCTGTTACATAGTT---------TGATTCTTTTATGCC
i calJac3.chr10             I 329 C 0
s canFam3.chr30                 63315 207 -  40214260 AATATTCTTATCAGATCATTTTGAAATCTGA-TCTAACCTTGAATAGCATAGATTTTTCATATTTTGTCATGAGAAATCCTAAGAAATTTAAGTATTTCTGATCTTTAGTTTACCATCTAGTTGTGGAGACAAAGACATGAAGT--TGAATAATACCAATTTCAGTTTAAAAATCTGTTACATAGTTTCTCTTCATTGCTGTCTTTTTCT-
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486   0 - 170124641 C

a score=289759.000000
s hg38.chr15_KI270850v1_alt    204608 173 +    430880 ACAGTGTGTTATGGTCCTCATTATTTGGATGAATAATTTGAATAATAAGTCAGCTTGTGA-CTTAGCCAAATAAATCTTCTGATTCCTAGTAAAGTG-TTTTTCATTATACGAAATGCCAGCTATGTAAGAGGAGATTAAAAGT--------------------------------ACTAAGAACTGTAAGTACTGCATTGATTATC
s panTro4.chr15              17727666 166 -  99548318 ACAGTGTGTTATGGTCCTCATTATTTGGATGAATAATTTGAATAATAAGTCAGCTTGTGA-CTTACCTAAATAAATCTTCTGATTCCTAGTAAAGTG-TTTTTCATTATATGAAATGCCAGCTATATAAGAGGAGATTAAAAGT--------------------------------ACTACGAACTGTAAGTTCCGCATT-------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10066148 173 +  10928107 ACAGTGTGTTATGGTCCTCATTATTTGGATGAATAATTTGAATAATAAGTCAGCTTTTGA-TGTACCCAAATAAATCTTCTGATTCCTAGTAAAGTG-TTTTTCATTATACCAAATGCCAACTATATAAGAGGAGATTAAAAGT--------------------------------ACTAAGAACTCTAAGTACCCTATTGATTATC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102158763 173 + 121039945 ACAGTGTGTTATGGTCCTCATTATTTGGATGAATAATTTGAATAATAAGTCAGCTTGTGA-CTTACCCAAATAAATCTTGTGATTCCTAGTAAAGTG-TTTTTCATTATACGAAATGCCAGCTATATAAGAGGAGATTAAAAGT--------------------------------ACTAAGAACTGTAAGTACCGCATTGATTGTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361394 171 - 171882078 ACAGTGTGTTATGATCCTCATTATTTGGATAAATAATTTGAATAATAAGTCAGCTTGTGA-CCTACCCAAATAAATCT--TGATTCCTAATAAAGTG-TTTTTCATTATACCAAATGCCAGCTATATAAGAGGAGATTAAAAGT--------------------------------ACTAAGAACTCTAAGTACCCTATTGATTATC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              46033 170 +    130206 ACAGTGTGTTATGGTCCTCATTATTTggataaataatttgaataataagTCAGCTTGTGA-CCTACCCAAATAAATCT--TGATTCCTAATAAAGTG-TTTTTCATTATACCAAATGCCAGCTATATAAGAGGAGA-TAAAAGT--------------------------------ACTAAGAACTCTAAGTACCGTATTGATTATC
i papAnu2.JH685126          I 2181 C 0
s calJac3.chr10              18028910 138 + 132174527 ACAGTG--------TTATCATTATTCAAATGAATAATTTGAATAATAAATCAGCTTGTAA-CCTACCC----AAATCTTCTGATCCCTAATAAAGTG-TTTTTCATTATATCAAATGCCAACTATATAAGG-------------------------------------------------------TTAAGTACTTTGTTGATTGTC
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 63522 199 -  40214260 TTTGGGTGTTATTAATCCCATTATACAAATGAATGATTTGAATAGTAAGTCAGCTTGTCAGCTTACCCAAATAAACCT-------TCTAGTAAAATGTTTTTTCATTACACCAAAAGCCAACAAC-TAAAAGGAGATTAAAAGTAAGAAAATTAAAAGTCAAAAAAATAAAAGGAGATTAAAAGCATTAAGTACTTCATTGATTTGC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486   0 - 170124641 C

a score=35793.000000
s hg38.chr15_KI270850v1_alt    204781 39 +    430880 ATATGCTAACCATGggccaggcacggtggcacacaccta
s panTro4.chr15              17727832 32 -  99548318 -------AACCATGggccaggcacggtggcacacaccta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10066321 39 +  10928107 ATATGCTAACCATGggccaggcacggcggcacatgcatc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102158936 39 + 121039945 ATATGCTAACCGTGggccaggcacagtggcacacaccta
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361565 39 - 171882078 ATATGCTACCCATAggtcaggcatggtggcacacacctg
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              46203 39 +    130206 ATATGCTACCCATAGGTCAGgcagggtggcacacacctg
i papAnu2.JH685126          C 0 C 0
s canFam3.chr30                 63721 18 -  40214260 AAATGTGAAGTGTGGACT---------------------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18029048  0 + 132174527 C
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108532486  0 - 170124641 C

a score=396370.000000
s hg38.chr15_KI270850v1_alt    204820 275 +    430880 taatcccagcactttgggaggctgaggcgggtggatcacttgaggtcaggagttcaagaccagcctggccaagatggtgaaacccctgtctctaccaaaaatacaaaaa-atttgccagatgtggtggtgcatactggtaatcccagctactcaggaggctgagtcaggagaatcgcttgaactcgggaggcagaggttgcagtgagctgagatcgtgccactgcgctccagcctgggtgacaaagataaactccatct-gaacaaaaaagaaaaag
s panTro4.chr15              17727864 272 -  99548318 taatcccagcactttgggaagctgaggcgggtggatcacttgaggtcaggagttcaagaccagcctggccaagatggtgaaacccc-atctctaccaaaaatccaaaaa---ttgccagatgtggtggtgcatactggtaatcccagctactcaggaggctgagtcaggagaatcgcttgaactcgggaggtggagattgcagtgagctgagatcgtgccactgcgctccagcctgggtgacaaagataaactgcatct-gaacaaaaaagaaaaag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10066360 272 +  10928107 taatcgcaccactttgggaggccaaggcagtcggatcacttgaggtcaggagtttgagaccagcctggccaagatggcaaaacccc-atctctaccaaaaacacaaaaaaacttgtcagat---gtggcatataccggtaatcccagctactcaggaggctgaggcaggagaattgcttgaactcaggaggcagagattgcagtgagctgagatcacaccactacactccagcctgggtgacaaagataaactccacct-gaactaaaaagaaaaag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102158975 271 + 121039945 taaccccagcactttgggaggccgaggcgggtggatcacttgaggtcaggagttcgagaccagcctggccaagatggtgaaacccc-atctctaccaaaaatacaaaaa-atttgccagat---gtggtgcatactggtaatcccagctactcaggaggctgaggcaggagaatcgcttgaactcgggaggcagaggttgcagtgagttgagatcgtgccactgcgccccagcctgggtgacaaagataaactccatct-gaacaaaaaagaaaaag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532486 274 - 170124641 taatcctaacactttgggaggccgaggcgggcagatcacttgaggtcaggaatttgagatcaacctggccaagatggcaaaacccc-atctctacc-aaaatacaaaaa-cttaggcagatgtagtggcatgtaccagtaatcccagcttcttgggaggctgaggcaggagaatctcttgaactcaggaggtagaggttgcagtgagccgagatcacgccactgtgctccagcctgggtgacaaagataaactccatctaaaaaaaaaaagaaaaag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107361604 274 - 171882078 taatctcagcactttgggaggccgagggggatggatcacttgaggtcaggagttccagaccaggcttaccaagatggtgaaacctc-atctctaccaaaaatacaaaaa-aattgccagatatggtggtgcgtactggtagtctcagctactcaggaggctgaggcaggagaatcgcttgaactcggggggcagaggttgcagtaagctgagattgcaccactgcactccagccttggtggcaaagataaactccatct-gaacaaaaaagaaaaag
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              46242 274 +    130206 taatctcagcactttgggaggctgagggggatggatcacttgaggtcaggagttccagaccaggcttaccaagatggtgaaacctc-atctctaccaaaaatacaaaaa-aattgccagatgtggtggtgcgtactggtagtctcagctactcaggaggctgaggcaggagaatcgcttgaactcggggggcagaggttgcagtaagctgagattgcgccactgcactccagccttggtggcaAAGATAAACTCCAtct-gaacaaaaaagaaaaag
i papAnu2.JH685126          C 0 C 0
s canFam3.chr30                 63739  73 -  40214260 -------------------------------TGAGTTCTTTGAGGTTA---------------------------------------A----------------AGAAA---------------------------------------------------------AAGGGAGTTGC-----CTCCAG----------TATAGCGATCTGGGA-----------------AGACTGTGTCCCGCAGGT-----------------------------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18029048   0 + 132174527 C
e chlSab2.chr29              21074218 217 -  24206276 I

a score=1192089.000000
s hg38.chr15_KI270850v1_alt    205095 498 +    430880 aaaaGCTAAGCATGGACTTAATTTCTCTGAGATTTAAAGCTGCAAAGAGTTGCT---------------------CTTCATGAAGTAGATGGGATCTCAGCTGGGCAGTGAAATGTGAGTGGGGTTTGGTCAGCTGGTGGAGGTTGCAGGAAAATTATTTACATAGGTGAA-GAGTAAGCGCAATCAGGTATCTAGGAAAGA--ATGAGGGGTTCAGAGTATACGAAACC-----AATTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGAGTTGTAGGAAATATTGCTGATGTAAT-ATTTTGTACTCAAACAGTTCTGTGGATTGGTGACAGA--TTTTTTTTTT-----------------------CAGGTAAGTAAACTATTACCCCTGGATATTCA---TCTTTCTGTGTAGCTGGTTGAGAAACAGGGGAGTAACAGTAAAGAAACTGTTTTAGAA-TAAATCTGGTGACAGCAGAAGAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGGC--------------------------------ACCGCTG----------
s panTro4.chr15              17728136 499 -  99548318 aaaaGCTAAGCATGGACTTAATTTCTCTGAGGTTTAAAGCTGCAAAGAGTTGCT---------------------cttcatgaagtaggtgggatctcagctgggcagtgaaatgtgagtgggatttggtcagctggtggaggctgcaggaaaattattTACGTAGGTGAA-GAGTAAACACAATCAGGTATCTAGGAAAGAGAATGAGGAATTCAGAGTATACGAAACC-----AATTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGAGTTGTAGGAAATATTGCGGATGTAAT-ATTTTGTACTCAAACAGTTCTGTGGATTGGTGACAGA--TTTTTTTTTTT----------------------CAGGTAAGTAAACTATTACCCCTGGATATTCA---TCTTTCTATGTAACTGGTTGAGAAAT--GGGAGGAAGAGTAAAGAAACTGTTTTCGAA-TAAATCTGGTGACAGCAGAAGAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGGC--------------------------------CATGCTG----------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10066632 499 +  10928107 aaaaGCTAAGCATGGACTTAATTTCTCTGAGGTTTAAAGCTGCAAAGAGTTGCT---------------------CTTCATGAAGTAGGTGGGATCTCAGCTGGGCAGTGAAATGTGAGTGGTTTTTGGTCAGCTGGTAGAGGTTGCAGGAAAATTATTTACATAGGTGAA-AAGTAAACACAATCAGATATCTAGGAAAGAGAATGAGGGATTCAGATTATATGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGGGTTGTAGGAAATATTGCGGATGTAAT-ATTTTGTATTCAAACAGTTCTGTGGATTGGTGACAGA--TTTTTTTTT------------------------CTGGTAAGTAAACTGTTACCCCTGGATATTCA---TCTTTCTATGTAACTGGTTGAGAAACAGGGGAGTAACAGTGAAGAAACTGTTTTAGAA-TGAATCTGGTGACAGCAGAAGAGAATATGAGGCGCATTGTGCTCACAGAGCCTAGAAGAGTGTGACGGTAGTTGAGGGC--------------------------------CCCGCTG----------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102159246 498 + 121039945 aaaaGCTAAGCATGGACTTAATTTCTCTGAGGTTTAAAGCTGCAAAGAGTTGCT---------------------CTTCATGAAGTAGATGGGATCTCAGCTGGGCAGTTAAATGTGAGTGGGGTTTGGTCAGCTGGTGGAGGTTGCAGGAAAATTATTTACATAGGTGAA-GAGTAAACACAATCAGCTATCTAGGAAAGAGAATGAGGGATTCAGAGTATATGAAACC-----AATTTGAGCTACAACACAAGGAGGGTAGGATTCATGTAGACGAGTTGTAGGAAATATTGCTGATGTAAT-ATTTTGTACTCAAACAGTTCTGTGGATTGGTGACAGA--TTTTTTTTTT-----------------------CAGGTAAGTGAACTATTACCCCTGGATATTCA---TCTTTCTGTGTAACTGCTTGATAAAC--AGAAGTAACAGTAAAGAAACTGTTTTAGAA-TAAATCTGGCGACAGCAGAAGAGAATATGAGATACATTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGGC--------------------------------CCCGCTG----------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108532760 498 - 170124641 aaaaGCTAAGCATGGACTTAATTTCTCTGAGGTTTAAAGCTGCAAAGAGTTGCT---------------------CTTCATGAAGTAGGTGGGATCTCAGTTGGGCAGTGAAATGTGAGTGGGGTTTGGTCAGTTGGTGGAGGTTGCAGGAAGATTATTTACATAGGTGAA-AAGTAAACACAATCAGGTATCTAGGAAAGAGAATGAGAGATTCAGAGTATACGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGAGTTGTAGGAAATAGTGCTGATGTAATAATCTTGTACTCAAACAGTTCTGTGAATTGGTGACAGA----TTTTTTTT-----------------------CTAGTAAGTAAACTATTACCCC-GGATATTCA---TCTTGCTATGTAACTGGCTGAGAAACAGGGGAGTAACAGTAAAGAAACTGTTTTAGAA-TAAATCTGGTGATGGCGGAAGAGAATATGAGACACACTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTGGTTGAGGGC--------------------------------CACGCCG----------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107361878 502 - 171882078 aaaaGCTAAGCATGGACTTAATTTCTCTGAGGTTTAAAGCTGCAAAGAGTTGCT---------------------CTTCATGAAGTAGGTGGGATCTCAGTTGGGCAGTGAAATGTGAGTGGGGTTTGGTCAGTTGGTGGAGGTTGCAGGAAGATTATTTACATAGGTGAA-AAGTAAACACAATCAGGTATCTAGGAAAGAGAATGAGAGATTCAGAGTACACGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGAGTTGTAGGAAATATTGCCGATGTAAT-ATTTTGTACTGAAACATTTCTGTGAATTGGTGACAGATTTTTTTTTTTT-----------------------CTAGTAAGTAAACTATTACCCCTGGATATTCA---TCTTGCTATGTAACTGGCTGAGAAACAGGGGAGTAACAGTAAAGAAACTGTTTTAGAA-TAAATCTGGTGACAGCGGAAGAGAATATGAGACACACTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTGGTTGAGGGC--------------------------------CACGCCG----------
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              46516 500 +    130206 aaaagctaagcatggacttaatttctctgagattTAAAGCTGCAAAGAGTTGCT---------------------CTTCATGAAGTAGGTGGGATCTCAGTTGGGCAGTGAAACATGAGTGGGGTTTGGTCAgttggtggaggttgcaggaagATTATTTACATAGGTGAA-AAGTAAACACAATCAGGTATctaggaaagagaatgagagattCAGAGTACACGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGAGTTGTAGGAAATATTGCTGATGTAAT-ATTTTGTACTGAAACATTTCTGTGAATTggtgacaga--tttttttttt-----------------------ctagtaagtAAACTATTACCCCTGGATATTCA---TCTTGCTATGTAACTGGCTGAGAAACAGGGGAGTAACAGTAAAGAAACTGTTTTAGAA-TAAATCTGGTGACAGTGGAAGAGAATATGAGACACACTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGGC--------------------------------CACACCG----------
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18029048 517 + 132174527 AAATGCTAAGCATGGACTTAATTTATC--AGGTTTAAAGCAGCAAAGAGTTGCTCTGGCAATAGTGACTTGTAGACTTCATGAAGTAAGTGAGATCTCAGCTGGGCAGTGAAATGTGAGTGGGGTTTGGTCATCTGGTGGAGGTTGAAGGAAACTTATTTACATGGGTGAA--AGTAAACACAGTCATGTATCCAGGAAACATAATGAGGGATTCTGAGTATATGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGTGTTGTAGGAAGTAGTGCTGATGTAGT-AT-TTGTACTTAAGTGGTTTCGTGGATTGGTGATAGA--TTTTTTTTTTT--------------------TCCTGGTAAGTAAACTGTCACCCT-GGATAATCA---TCTTTCTGTATAACTGGTTGAGAAAC--GGAAATAACAGTAAAGAAACTGTTGTAGAG-TAAATCTGGTGATAGCAGAAGAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAAGGTGTGACAGTAGTTGAGGGC--------------------------------CACACTG----------
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 63812 486 -  40214260 ----------------------------GGGATCTGGGGGTG---------------------------------------GGGGTGAGGGG---------TGGGCATTGAAGTAAGAGTGAGTTTCG-----CTGGTGGAGGTTGAAGGAAAATTATCTACATAGGTGAAAAAGTAAATATAATCACATATCTAGGAAAGAATGTGATGTATTCATAGCACACCAGACCAGACGAGTTTGAACTAGACAGCAAGGTGGGTAGAACTCCTATGGAAGAGTTACATGAAA--------ATGTGGT-TTTT---------ATAGGACTGTGGAGTGGTGCAGGG--CTTTTTGTTTTTTTGTTTTCATTTTCTTTTTTCCTGGTAAGCAAACTATGACCTGAGGGTATTGAATTTCTCTCTCATTAGCTGGTTCAGGAACAGGAAAAT-ACAGGAAAGAGAATGTTTTAGAAGGAAATATAACAATGGAAGAAGACAATG-----------GTGTTCAGAAAGCCTAGAAGAATGCAAGGCTAGTTAAGAGCTGATGGCCCTGTCTTggggcatctgagtggctcattctgttgatcattg
i canFam3.chr30             C 0 I 234
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=762857.000000
s hg38.chr15_KI270850v1_alt    205593 298 +    430880 TTGTCTTAGAGTGAAGTGAGGAGAACCTACATTGGTGTGGTAGTCATGGGAGTGGAAGGAGGAATGAAATGTGAAAGCCCATTGGAGGCAGAATCAAAATGCCTTGGTCTTAATAGTCAACTATTAAG-------GAGAAATTATTGGCTGACTTAGGAAGAAGTGAAAAATG-----------TGAAATACCAATAAAACACCAGG-CTTGTGATTTTAG--TCAGGGTAAAGCTTAAGCATTGTGTGATTCTAGATAGATTACTGAGGAG-TTTTGTTCCATTTATTTTATGTCC-ATATCTTTGAGCTATGATTCTAT-
s panTro4.chr15              17728635 306 -  99548318 TTGTCTTAGAGTGAAGTGAGGAGAACTTACATTGGTGTGGTAGTCATGGGAGTGGAAGGAGGAATGTAATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAAATATTAAGTAAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGTAAAAAATG-----------TGAAATACCGATAAAACACCAGG-CTTGCAATTTTAG--TCAGGGTAAAGCTTAAGCGTTGTGTGATTCTAGATAGATTATTGAGCAG-TTTTGTTCCATATATTTTATATCCCATATCTTTGAGCTATGATCCTAT-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10067131 306 +  10928107 TTGTCTTAGAGTGAAGTGAGGAGAACCTGCATTGCTGTGCTAGTCATGGGAGTGAAAGGAGGAATGAAATGTGAAAGCTCATTGGAGAAGGAGTCAAAGTGGCTTGGTCTTCGTAGTCAGCTATTAAGTGAGGAGGAGGAATTACTGACTGACTTAGGAAGAAGTAAAAAATG-----------TGAAACACCAATAAAACACCAGG-CTTGCAATTTTAG--TCAGGGTAAAGCTTAAGCGTTGTGTGATTCTAGATAGATTATTGAGCAG-TTTTGTTCCATTTATTTTATATCCCATATCTTTGAGCTATGATCCTAT-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102159744 306 + 121039945 TTTTCTTAGAGTGAAGTGAGGAGAACCTACATTGGTGTGGTAGTCATGGGGGTGGAAGGAGGAATGAAATGTGACAGCTCATTGGAGGCAGAATCCAAATGGCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGTAAAAAATG-----------TGAAGTACCAATAAAACACCAGG-CGTGCAATTTTAG--TCAGGGTAAAGCTCAAGCATTGTGTGATTCTAGATAGATTATTGAGCAG-TTTTGTTCCATTTATTTTATATCCCATATCTTTGAGCTATGATCCTAT-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108533258 306 - 170124641 TCATCTTAGAGTGAAGTGAGGAGAACCTACGTTGGTTTGGTAGTCCTGGGAGTGGAAGGAGGAATGAAATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGTAAATAATG-----------TGAAATGCCAATAAAACACAAAA-CTTGCCATTTTAG--TCAGGGTAAAACTTAAGCATTGTGTGATTCTAGATAGACTATTGAGCAG-TTTTCTTCCATTTATTTTATATCCCATATCTTTGAGCTATAATCCTAT-
i rheMac3.chr7              C 0 I 479
s macFas5.chr7              107362380 306 - 171882078 TCATCTTAGAGTGAAGTGAGGAGAACCTATGTTGGTTTGGTAGTCCTGGGAGTGGAAGGAGGAATGACATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAGTTATTGGCTGACTTAGGAAGAAGTAAAAAATG-----------TGAAATACCAACAAAACACCAAG-CTTGCAATTTTAG--TCAGGGTAAAGCTTAACCGTTGTGTGATTCTAGATAGATTATTGAGCAG-TTTTGTTCCATTTATTTTATATCCCATATCTTTGAGCTATGATCCTAT-
i macFas5.chr7              C 0 I 1
s papAnu2.JH685126              47016 306 +    130206 TCATCTTAGAGTGAAGTGAGGAGAACCGACGTTGGTTTGGTAGTCCTGGGAGTGGAAGGAGGAATGACATGTGAAAGCTCATTGGAGGCAGAATCAAAATGCCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAGTTATTGGCTGACTTAGGAAGaagtaaaaaatg-----------tgaaataccaACAAAACACCAAG-CTTGCAATTTTAG--TCAGGGTAAAGCTTAACCGTTGTGTGATTCTAGATAGATTATTGAGcag-ttttgttccatttattttatatccCGTATCTTTGAGCTATGatcctat-
i papAnu2.JH685126          C 0 I 1
s calJac3.chr10              18029565 300 + 132174527 TTGTCTTAGAGTGAAGTGAGGAGAGCCTACATTGGTTTGGTAGTTCTGGGAATGGAAGGAGGAATGAAACGTAAAAGCTCATTGGAAGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTATCAAGTGAGGAGGAGGAATTACTGGCTGACTTGGCAAGAAGTAAAAGATG-----------TGAAATACTGATAAAACACAATT-CTGGCCATCTCAG--TCAGGGTAAAGCTGAAGCACTGTGTGATTCTAGATAGATTATTGATCAG-TTTTGTTCCATGTATTTTATATCCCATATCTTCTAGCTGTGA-------
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 64532 312 -  40214260 CTGTCTTAGAGTAAAGTGAAGACACCCTAATTTGGT------ACCGTGGAAGTGGAAAGATGAATGGAAGGTGAGCACTAATGTGAAGCAGAACCGCAGTGACTTGGTCTTCATAGTTCACTGTTACATGATGGGGAGGACTTACTGGCTGATGAGAGAAGAACTAAAAAAGGTGAAGGCCTGATGAAGGATTGATAAAACACAGAGCCTTGGAACCTCAGGCTCAGCCTAACACTTAAGCAC----TGAGTCTGATGAGATTATTGAGCTGTTTTTGTCCTATATATGTTTTATCCTCCATCTTCTAGCTATCATCCTCTT
i canFam3.chr30             I 234 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=42241.000000
s hg38.chr15_KI270850v1_alt    205891 25 +    430880 CCTTTATTTCTTGACATACCCAAAC
s panTro4.chr15              17728941 25 -  99548318 TGTTTATTTCTTTACATACCCAAAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10067437 25 +  10928107 TCTTTATTTCTTGACATACCCAAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102160050 25 + 121039945 TCTTTATTTCTTGACATACCCAAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107362687 25 - 171882078 TCTTTATTTCTTGACATACCCAAAC
i macFas5.chr7              I 1 C 0
s papAnu2.JH685126              47323 25 +    130206 tctttatttcttgacaTACCCAAAC
i papAnu2.JH685126          I 1 C 0
s calJac3.chr10              18029865 17 + 132174527 -CCCTAttttttgacata-------
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 64844 25 -  40214260 CCTCTGTTTCTTATCACAGCCAAAC
i canFam3.chr30             C 0 I 187
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108533564 479 - 170124641 I

a score=388097.000000
s hg38.chr15_KI270850v1_alt    205916 224 +    430880 ATTTTTTAAACta----------------ttgtgatacagcttttatatgataagtctcactctttg-aagtgtacagtttggtgg---tttttagtatatt--cagagttatgcagccattaccactacctaatttcagaaccttttc-ttc---tccccagaaagaaaccccatgcccattagcagtcactctgtatactcgtc----tcccccaccgttgatcctggcgacctctgatctaatttctgtct
s panTro4.chr15              17728966 224 -  99548318 ATTTTTTAAACta----------------ttgtgatacagcttttatatgataagcctcaccctttg-aagtgtacagttcagtgg---tttttagtatatt--cagagttatgcagccattaccattagctaatttcagaaccttttc-ttc---tccccaaaaagaaaccccatacccattagcagtcgctctgtgtgctcgtc----tcccccaccgttcatcctggcaacctctgatctaatttctgtct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10067462 224 +  10928107 ATTTTTTAAACta----------------ttgtgatacagctgttatatgataagcctcaccctttg-aagtgtacagttcagtgg---tttttagtatatt--cagagttatgcagccattaccattacctaatttcagaaccttttc-ttc---tccccaaaaagaaaccacatacccattagcagtcactctgtatactcgtc----tcccccaccgttgatcctggcaacctctgatctaatttctgtct
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102160075 224 + 121039945 ATTTTTTAAACta----------------ttgtgatacagcttttatatgataagcctcaccctttg-aagtgtacagttcagtga---tttttagtatatt--cagagttatgcagccattaccactacctcatttcagaaccttttc-ttg---tccccaaaaagaaaccccgtacccattagccgtcactccctatacccatc----tcccctgccgttgatcctggcaacctctgatctaatttctgtct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107362712 224 - 171882078 ATTTTTGAAACGA----------------TTGTGATACAGTTTTTAT---ATAAGTCAcaccctttt-aagtgtacatttcagtagttttttttagcatatt--cagagttatgcagccattaccactacctaatttcagaaccttttc-ttc---tctccagaaagaaaccctgtacccattagcagtcactccctatacacatt----tcccccaccattgatcctggcaatgtctgatctaatttctgtct
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              47348 215 +    130206 ATTTTTGAAACGA----------------TTGTGATACAGTTTTTATATGATAAGTCTCACCCTTTG-AAGTGTACATTTCAGTAG--TTTTTTAGCATATT--CAG-TTTATGCAGCCATTACCACTACCTAATTTCAGAACCTTTTC-TTC---TCtccagaaagaaaccctgtacccattagcagtcactccctataCACATT----TCCCCCACCATTGATCCTGGCAATGTCTGAtctaa---------
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18029882 209 + 132174527 ------------------------------------gcagtttatatatgataaagctcaccctttg-aagtgtacaattcggtgg---tttttagtatattcgcagagttgtgcagccattaccactacctaatttcagaacattttc-atcactttttcagaaagaaaccctgtacccattagcagtcatttcctatacccctc----tcccccaccattgatcctggcaacctctcatctaatttctatat
i calJac3.chr10             C 0 I 2
s canFam3.chr30                 65056 243 -  40214260 Attttttaaataacagtttcattgcttcgttgtgatacaattcacatatgctaaaactcaacctttgaaagtgtacagttcagtgg---tttttggtatattcatagagttgtgtaaacatcaccactgtcttatttcaaaacattttcatta---ctccctgaaagaaatcccgtacccggtagcagtcatttctcattcccactgcagccccccacc-----cactgccaaccactaatctccattctgtct
i canFam3.chr30             I 187 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108533564 479 - 170124641 I

a score=166920.000000
s hg38.chr15_KI270850v1_alt    206140 76 +    430880 ctgtagatttgcctatcctggacatttcatataaatagaatcatacaaaatgtggcattttgtaattgacttttCT
s panTro4.chr15              17729190 76 -  99548318 ctgtagatttgcctatcctggatatttcatataaatagaatcaaacaaaatgtggcattttgtgactgacgtttct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10067686 76 +  10928107 ctgtagatttgcctatcctgggcatttcatataaatagaatcatacaaaatgtggcattttgtgactgacttttct
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102160299 76 + 121039945 ctgtagatttgcctatcctggacatttcatataaatagaatcatacaaaatgtggcattttgtgactgacttttCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108534043 75 - 170124641 ctgtagatttgcctgtcctggacatttcatataaataaaatcatacaaaatatggctttttgtgactcg-tgtttt
i rheMac3.chr7              I 479 C 0
s macFas5.chr7              107362936 76 - 171882078 ctgtagatttgcctatcctggacatttcatataaatagaatcatacaaaatgtggcattttgtgactgacttttCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              47563 42 +    130206 ----------------------------------atagaatcatacaaaatGTGACATTTTGTGACTGACTTTTCT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18030093 75 + 132174527 ctgtagatttgcctatactggatatttcatataaatagaatcatacaaaatgtggctttttgcaactgg-tgtttt
i calJac3.chr10             I 2 C 0
s canFam3.chr30                 65299 76 -  40214260 ctaaggattttcctgtttggcacctttcatataagtgggaccatacaaaatgtagccttctatggctggcttcttt
i canFam3.chr30             C 0 I 6192
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=38117.000000
s hg38.chr15_KI270850v1_alt    206216 21 +    430880 TTGAAGTGA-TTATAAAGCAAA
s panTro4.chr15              17729266 21 -  99548318 ttGAAGTGA-TTATAAAGCAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10067762 21 +  10928107 TTAAAGTAA-TTATAAAGCAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102160375 21 + 121039945 TTGAAGTGA-TTATAAAGCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108534118 22 - 170124641 ttacAGTGATTTTTAAATGAAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107363012 21 - 171882078 TTAAAGTGA-TTATAAAGCAAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              47605 21 +    130206 TTAAAGTGA-TTATAAAGCAAA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18030168 21 + 132174527 ttacAGTGA-TTTAAAATCAAA
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 65375 6192 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=132015.000000
s hg38.chr15_KI270850v1_alt    206237 46 +    430880 TGCCTGAAGAGGCCAAGC-TTAGGATAGTGTTTGCTGTACAGCTTTG
s panTro4.chr15              17729287 46 -  99548318 TGCCTGAAGAGGCAAAGC-TTAGGATAGTGTTTGCTGTACAGCTTTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10067783 46 +  10928107 TGCCTGAAGAGGCTAAGC-TTAGGATAGTGTTTGCTGTACAACTTTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102160396 46 + 121039945 TGCCTGAAGAGGCTAAGC-TTAGGATATTGTTTGCTGTACAGCTTTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108534140 46 - 170124641 TATCCGAAGAGGCTAAGC-TTAGGATAGTGTTTGCTGTACAACTTTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107363033 46 - 171882078 TGCCTGAAGAGGCTAAGC-TTAGGAGAGTGCTTGCTGTGCAACTTTG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              47626 46 +    130206 TGCCTGAAGAGGCTAAGC-TTAGGAGAGTGTTTGCTGTGCAACTTtg
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18030189 45 + 132174527 T-CCTGAAGAGGCTAAGC-TTAGGATAGTGTTTGCTGTACAACTTTG
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 71567 47 -  40214260 TGCCTAAAGAGGCTAAGCTTTAGGATAGTGTTTGCTATGCAACTTTG
i canFam3.chr30             I 6192 I 527
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=662253.000000
s hg38.chr15_KI270850v1_alt    206283 279 +    430880 ACAACTGA-ATTTTTTTTAAGTTGAAAA-----TATTACTGTGTCTGTATATGTGGCATATTATCCTTAGATGACCGTTACTTCAATTATTAGAA-TTT----TTTTCCCTAGTATTCTTGAACTGTCTCAATATTCAGTAGGAACCC---TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATATTGACGAAATGAATGTCATTTAATACAGTAGTAGAGTCGA-----CCACTTTTAGGTGTCAGTGCTGCTGGAAGTGTATATTAAGGAAAAGTTTACTTATCTTACTTAT-G-
s panTro4.chr15              17729333 282 -  99548318 ATAACTGA-ATTTTTTTTAAGTTGAAAA-----TATTACTGTGTCTGTATATGTGGCATATTATCCTTAGATGACCCTTACTTCAATTATTAGAA-TTT----TTTTCCCTAGTATTCTTGAACTGTCTCAATATTCAGTAGGAACCCCCCTTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATATTGACAAAATGAATGTCATTTAATACAGTAGTAGAGTCGA-----CCACTTTTAGGCGTCAACGCTGCTGAAAGTGTATATTAAGGAAAAGTTTACTTATCTTACTTAT-C-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10067829 279 +  10928107 ACAACTGA-ATTTTTTTC-AGTTGAAAA-----TATTACTGTGTCTGCATATGTGGCATATTATCCTTAGATGACCCTTACCTCAATTATTAGAATTTT----TTTTCCCTAGTATTCTTGAACTGTCTCAATATGCAGTAGGAACTC---TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATATTGACAAAATGAATGTCATTTAATACAGTAGTAGAGTCAA-----CCTCTTTTAGATGTCAATGCTGCTGAAAGTGTATATTAAGGAAAAGTTTACTTATCTTACTTAT-C-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102160442 282 + 121039945 ACAACTGA-ATTTTTTTTAAGTTGAAAA-----TGTTACTGTGTCTGTATCTGTGGCATATTATCCTTAGATGACCCTTACTTCGGTTATTAGAA-TTT----TTTTGCCTAGTATTCTTGAACTGTCTCAATATTGAGTAGGAACCCCCCTTTGGAGACAAAGAGCAGTAAGAATTTGGGACACATATTGACAAAATGAATGTCATTTAATACAGTAGTAGAGTCGA-----CCACTTTTAGGTGTCAACGCTGCTGAAAGTGTATATTAAGGAAAAGTTTACTTATCTTACTTAC-C-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108534186 283 - 170124641 GCAACTGA-ACTTTTTTAAAGTTGAAAATACTGTATTACGGTGTCCATACATATGACATGTTATCCTTAGATGACCCTTACTTAGATCATT-AAA-TTT----TTTTCCCTAGTATTCTTGAACTGTCTCAATATTTAGCAGGAACCC---TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATATTGACAAAATGAACGTAATTTAATACAGTAGTAGAGTCAA-----CCACTTTTAGGTGTTGATGCTGCTGATAGTGTATATTAAGGAAAAGTTTACTTATCTTAGTTTTT--
i rheMac3.chr7              C 0 I 59
s macFas5.chr7              107363079 278 - 171882078 ACAACTGA-TTTTTTTTTAAGTTGAAAA-----TATTACTGTGTCTGTATATGTGACATATTATCCTTAGATGACCCTTGCTTCAATTATTCAAA-TTT----TTTCCCCTAGTATTCTTGAACTGTCTCAATATTCAGTAGGATCCC---TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATATTGACAAAATGAATGTAATTTAATACAGTAGTAGAGTCAA-----CCACTTTTAGGTGTCGATGCTGCTGGAAGTATGTATTAAGGAAAAGTTTACTTATCTTACTTTT---
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              47672 278 +    130206 acaactga-tttttttttaagttgaaaa-----tattacTGTGTCTGTATATGTGACATATTATCCTTAGATGACCCTTGCTTCAATTATTCAAA-TGT----TTTTCCCTAGTATTCTTGAACTGTCTCAATATTGAGTAGGATTCC---TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATATTGACAAAATGAATGTAATTTAATACAGTAGTAGAGTCAA-----CCACTTTTAGGTGTCGATGCTGCTGAAAGTATGTATTAAGGAAAAGTTTACTTATCTTACCTTT---
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18030234 258 + 132174527 GTACCTGA-ACTTGTTTAAAGTTGAAAATATTATATTACTGTGTCCATATATGTGGCATATTATCCTTAGGTGACCCTTACTTAGATTATTAATA--TT----TTATGCCTCGTATACTTGAACTGTCTCAGTATTCAGCAGGAACTC---TTTGGAGGCAAAGAGCAGTAAGAATTTGAAACACATACTGACAGA---------------------AGTAGAATTGA-----CAACTTTTAGGTAGAAATGCTGCTGATAGTGTATATTAAGGAAACGTTTACTTATCTTTTT------
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 72141 283 -  40214260 ACAACTGAGGTTTTTTTAAAATTGAAAC-----TATTACCATGCCC--ATATGTGGTATATTATCTTTAAGTGACCCTTA----GATTATTATTA-TTTTTCCTTTTTTCTAATATTCTTGAATTGTCTCAATATTCAGCAGGAACTA---TTTGAAGGCAAAGAACAATAAGTATTTGGAGCATATATTGATAGAGTGAATACAACTCAATGTGGAAGTAGAATCAATCTCTCCTTTTATAGGTGTAAATGCTACTAATAGTATGTGTTAAGGAAAAGTTTGCTTTCCTCACTTTT--A
i canFam3.chr30             I 527 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=119312.000000
s hg38.chr15_KI270850v1_alt    206562 66 +    430880 TAGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTGCATAGGTATTA
s panTro4.chr15              17729615 66 -  99548318 TGGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTGCATAGGTATTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10068108 66 +  10928107 TAGTGAAGGTACTAGAACTACTTCTGCCTTCTGTTTAGAT-TTCAACAAACATTTGCGTAGGTATTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102160724 66 + 121039945 TAGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTGCATAGGTATTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107363357 65 - 171882078 -TGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTGCATAGCTATTA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              47950 65 +    130206 -TGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTagat-ttcaacaaacatttgcatGCCTATTA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18030492 64 + 132174527 --GTGTAGGTACTAGAACTACTTCTGTCTTGTGTTTAGAC-TTCAACAATATTTGTTGTAGATATTA
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 72424 57 -  40214260 ---TGTAGGTTCTAGAGCTGTTT----CTTGTGTTTAGAGATCCAACAAACATTTGTGTAGTTA---
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108534469 59 - 170124641 I

a score=510275.000000
s hg38.chr15_KI270850v1_alt    206628 212 +    430880 TGCGGTTGTACAAATGTACTGTCTTTTGACCTGAAAATGCAAAAACTT----TCTTCCTACTTTCTGAGACTCTGCA-ACCTTAAAGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGTTGGTTGGATAATGGGTGACAATGTCTGCCATAT---ACTTCCTTTTCCCAAAACA--------AGTT------CCTGTCTACCATCAGCATCTCCAAAATTTGAAGATCAAGTG
s panTro4.chr15              17729681 216 -  99548318 TGCGGTTGTACAAATGTACTGTCTTTTGACCTGAAAATGCAAAAACTTCCTTTCTTCCCACTTTCTGAGACTCTGCA-ACCTTAAAGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTGACAATGTCTACAATAT---ACTTCCTTTTCCCAAAACA--------AGTT------CCTGTCTACCATCAGCATCTCCAAAATTTGAAGATCAAGTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10068174 214 +  10928107 TGTGGTTATACAAATGTACTTTCTTTTGA-CTGAAAATGCAAAAACTTCCTCTCTTCCCACTTTCTGAGACTCTGCA-ACCTTAAAGGAAGACTGGGGTACCTTAAAGGAAAGGTGGTGATGGTTGGATAATGGATAACAATGTCTACCATAT---ACTT-CTTTTCCCAAAACA--------AGTT------CCTGTCTACCGTCAGCATTTCCAAAATTTGAAGATCAAGTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102160790 213 + 121039945 TGTGGTTGTACAAACGTACTGTCTTTTGACCTGAAAATGCAAAAACTTCCTTTCTTCCCACTTTCTGAGACTCTGCA-ACCTTAAAGGAAGAGTGGGGTACTTTAAAGGAAA---GGTGATGGTTGGATAATGGGTAACAGTGTCTACCGTAT---ACTTCCTTTTCCCAAAACA--------AGTT------CCTGTCTACCATCAGCATCTCCAAAATTTGAAGATCAAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108534528 222 - 170124641 TTTGGTTGTACAAATGTACTTTCTTTTGACCTGAAAATGCAAAAACTTCCTTTCTTCCCACTTTCTGAGACTCTGCA-ACTTTAAAGGAAGAGTGGGGTTCTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTAACAATGTCTACCGTAT---GCTTTCTTTTCTCAAAACA--------AGTTCCCATCCCTGTCTGCCGTCAGCATATCCAAAATGTGAAGATCAAGCG
i rheMac3.chr7              I 59 C 0
s macFas5.chr7              107363422 216 - 171882078 TGTGGTTGTACAAATGTACTTTCTTTTGACCTGAAAATGCAAAATCTTCTTTTCTTCCCACTATCTGAGACTCTGCA-ACTTTAAAGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGATGGTTGGATAAGGGGTAACAATGTCTACCATAT---GCTTCCTTTTGCCAAAACA--------AGTT------CCTGTCTACCATCAGCATTTCCAAAATTTGAAGATTAAGTG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              48015 216 +    130206 TGTGGTCGTACAAATGTACTGTCTTTTGAcctgaaaatgcaaaaacttcttttcttcccaCTATCTGAGACTCTGCA-ACTTTAAAGCAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTAACAATGTCTACCATAT---GCTTCCTTTTGCCAAAACA--------AGTT------CCTGTCTACCATCAGCATTTCCAAAATTTGAAGATTAAGTG
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18030556 215 + 132174527 TGTACTTGTACAAATGCACTTTCTTTTGTCCTGAAAACCCAAAAACTTCCTTTCTTCCCATCTCCTGAGACTCTGCA-CCCCCAAAGGAAGAGT-GGGTACCTTAAAGGAAAGGTGGTGATGGTTTGATAATGAGTAACAATGTCTGCTGTAT---ACTTTCTTTTCCCAAAACA--------AGTT------CCTGTCTACCATCAGCATTTCCAAAATTTGAAGATCATATG
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 72481 218 -  40214260 AGGCCTTGTAGAAAATTAGTTTCTTTTGGCCCGTGAATACAAAATCTTGCCTTCTTCCCACC-TGAAAGACTCTCCATGCCCAGAATGAAGAGT-GGGTGC-TAAAAAGAAAGGTGGCA-------GGTAATTTGTAACTTGGGCTGGTCTACACAACTCTTTTTTCCTAAGATAATAGTCTGAGTC------CCTGTCTGTATTTAGCATTTCTGAAGTGTAAAGATCAGTAA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=730915.000000
s hg38.chr15_KI270850v1_alt    206840 407 +    430880 TGGTGTTAACTCATTAACTAAATGACTAGACTTTGAGCAGTT----GTGGAACCAAAATCTGAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAATGAGTG------------CACATTATATACAATACTCTCTTAGCCCAGTGGCAGATTTAAGGAGTGAGAGAGAGATTTCAAATGTTTCAGAAATC-----AAATACACAAAG-AATAAAAATTTTTAATCCCATGATTCTTTACCTGAGTTTAATTTTTCGGAGAGTTTTTCTTTTAGATTTTCTTTTCCTTCCATTAAACTTTCACTTTGAAAGCTCCCAGGGTTTGGGCAAAGCAAGTGGGAAAGACACTTGCTTGGATTCTCCAGGGCAAGGGAGTTAAAG------AGGGCTTCTTTCCCTCATTTTATTATTGAATAATGTCATGAAAACAA
s panTro4.chr15              17729897 405 -  99548318 TGGTGTTAACTCATTAACTTA-TGACTAGACTTTGAGCAGTT----GTGGAACCAAAATCTGAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAGTGAGTG------------CACATTATATACAATACTCTCTTAGCCCAGTGGCAGATTTAAGGAGTGAGAGATAGATTTCTA-TGTTTCAGAAATC-----AAATACACAAAG-AATAAAAATTTTTAATCCCATGATTCTTTACCTGAGTTTAATTTTTTGGAGAGTTTTTCTTTTAGATTTTCTTTTCCTTCCATTAAACTTTCACTTTGAAAGTTCCCAGGGTTTGGGCAAAGCAAGTGGGAAAGATACTTGCTTGGATTCTCCAGGGCAAGGGAGTTAAAG------AAGACTTCTTTCCCTCATTTTATTATTGAATAATGTCATGAAAACAA
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102161003 403 + 121039945 TGGTGTTAACTCATTAACTAA-TGACTAGACTTTGAGCAGTT----GTGGAACCAAAATCTAAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAATGAGTG------------CAGATTATATACAATACTCTCTTAGCCCAGTGGCAGATTTAAGGAGTGGG----AGATTTCTA-TGTTTCAGAAATC-----AAATACACAAAG-AATAAAAATTTTTAATCCCATGATTCTTTACCTGAGTGAAATTTTTTGGAGAGTTTTTCTTTTAGATTTTCTTTTCCTTCCATTAAACTTTCACTTTGAAAGGTCCCAGGGTTTGGGCAAAGCAAGTGG----GACACTTGCTTGGATTCTCCAGGGCAAGGGAGTTAAGGTTAAACAGGACTTCTTTCCCTCATTTTATTATTGAATAATGTCATGATAACAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108534750 405 - 170124641 TGGTGTTAATTCATTAACTAA-TCACTAGACTTTGAGTGGTT----GTGGAAGCAAAATCTCAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAGTAAGTG------------CACATTCTATACAAAACTCTCTTAGCCCAGTGGCAGATTTAAGGAGTGAGAGATAGATTTCTA-TGTTTCAGAAATC-----AAATATACAAAG-AATAAACATTTTTAATCCCGTGATTCTTTGCTCGAGTTTAATTTTTTGGAGTGTTTTTCTTTTAGATTTTCTTTCCTTTCCATTAAACTTTCACTTTGAAAGGTCCCAGGGTTTGGTCAAAGCAAGTGGGAAAGCCACTTGCTTGGATTCTCCAGGGCAAAGGAGTTAAAG------AGGACTTCTTTCCCTCATTTTGTTATTGAATAATGTCATGATAACAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107363638 405 - 171882078 TTGTGTTAACTCATTAACTAA-TGAATAGACTTTGAGCAGTT----GTGGAATCAAAATTTCAGTGAGTACCTGGATGTTCTAATTCTGTTAAATCAATGAGTA------------CACATTATGTGCAATATCCTCTTAGCCCAGTGGCAGATTTAAGGAGTGAGAGATCAATTTCTA-TGTTTCAGAAATC-----AAATACACAAAG-AATAAAAATTTTTAATCCCATGATTCTTTACCTGAGTTTAGTTTTTTGGAGAGTTTTTCTTTTAGATTTTCTTTCCTTTCCATTAAACTTTCACTTTGAAAGGTCCCAGGGTTTGGTCAAAGCAAGTGGGAAAGCCACTTGCTTGGATTCTCCAGGGCAAAGGAGTTAAAG------AGGACTTCTTTCCCTCATTTTGTTATTGAATAATGTCATGATAACAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              48231 404 +    130206 TTGTGTTAACTCATTAACTAA-TGAATAGACTTTGAGCAGTT----GTGGAATCAAAATCTCAGTGAGTACCTGGATGTTCTAATTCTGTTAAATCAATGAGTA------------CACATTATGTGCAATATCCTCTTAGCCCAGTGGCAGATTTAAGGAGTGAGAGATCAATTTCTA-TGTTTCAGAAATC-----AAatacacaaag-aataaaaatttttaatccaatgattctttacctgagtttagttttttggagagtttttcttttatattttctttcctttccattaaactttcactttGAAAGGTCCCAGGGTTTGGTCAAAGCAAGTGGGAAAGCCACTTGCTTGGATTCTCCAGGGCAAA-GAGTTAAAG------AGGACTTCTTTCCCTCATTTTGTTATTGAATAATGTCATGATAACAA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18030771 390 + 132174527 TGGTGTTAACTCATTAACCAA-TTATTAGACTTTGAGCAGTT----GCAGAACCAAAATCTAAATGAGTACCTGGATCTTCTAATTCTGTTAAGTCAGTTAGTG------------CACATTATGCATGATAATCCTTTAGCCCAGTAGGAGATTTAAAGAGTGGAGGATAGATTTC---TGTTTCAGAAATA-----GAATATACAAAGAAAAAAAAATTTTTAAGCCTATCATTCTTTACCCGATTTTAAATTTTTAGAGAGT------------TTTTCTTTCCCTTCCATCAATCTTTCTCTTTGAAAGGTTTCAGGGTTTGTGCAAAGCAAATGGAAAAGACACTTGCTTGGATTCTTTGGGGTGGGGGAGTCA--G------AGGGCTTCTTTCCCTCATTTTATTATTAAATCATGTCACTATAACAA
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 72699 388 -  40214260 TAGTGTTAACTCATTAACAGA-TGACTAGAGTTTGAGCAATTTATGGAGAAACCAAAATTCAAATGAAAGCATGGATCTTCTAATTCTGTTAAATCAACAAGTGCTTATTTAAAGCCACTTTATACAAGATACTCTTTGAGCCCATTGGGAGATTCAGATGATTGG----AGATGTCTG-TGTTTTAGAGATCTAGGAGAATATACAAAC-----AAGTTTGTAAATCTTCTGATTCTCTACCCAAATTTAGTGTTTTGAAGTGT------------TTTTCTTTCCCTCCTATA-----TTAACTGTGGAAGTTCCCAGAGTTTGGTGCAGTCAGGTTAGGGAGACACTAGCTTAAATTCTCCAGGATGTGGGACTTACTG------AATA-----------AATTCCATTACTGAATAATTTTACTATAAC--
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e ponAbe2.chr15_random       10068388   0 +  10928107 C

a score=1107553.000000
s hg38.chr15_KI270850v1_alt    207247 428 +    430880 TTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAATAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGGAATGGAAGATGCGCAGGCTAGAGTGGTCTTGGCAAGTCTT-CTG---------GGGGGAAAT-ACAGCATTTGGAAGGGTAGGAAGCAGAAGGAATCTCAAGCAAGGGAAAGGTGTGGGCAGAGCCCCGGAGGACAGAACCGTTTGTGGTGGACTTGGTGTCCACATAGATCTAATCAGTGGTCTTAGCTTTTGTGCTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATTCCCTTGATTTTACTTTAGGCATGCTATCT-GTGTATTTTGAAATTTAAAATAACATTAAAGGAGAAATGAAATTATTTTGTTTGAGAAAGAATTAAAAGGTTAAAACAT
s panTro4.chr15              17730302 428 -  99548318 TTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAATAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGGAATGGAAGATGTGCAGGCTAGAGTGGTCTTGGCAAGTCTT-CTG---------GGGGGAAAT-ACAGCATTTGGATGGGTAGGAAGCAGAAGGAATCTCAAGCAAGGGAAAGGTGTGGGCAGAGCCCCGGAGGACAGAACAGTTTGTGATGGACTTGGTGTCCACATAGATCTAATCAGTGGTCTTAGCTTTCGTGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATTCCCTTGATTTTACTTTAGGCATGCTATCT-GTGTATTTTGAAATTTAAAATAACATTAGAGGAGAAATGAAATTATTTTGTTTGAGAAGGAGTTAAAAGGTTAAAGCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10068388 419 +  10928107 TTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTGTGTGCAAAATAATTTGGTTTAGTCAATGCAAGGATCCCTTTGGTTAGCTGGAATGGAAGATGTGCAGGGTAGAGTGGTCTTGGCAAGTCTT-CTG---------GGGGGAAAT-ACAGCATTTGGAGGGGGAGGAAGCAGAATAAATCTCAGGCAAGGGAAAGGTGTGGGCAGAGCCCCAGAGGACAGAGCGGTTTGTGGTGGACTTGGTGTCCACATAGATCTAATCAGTGATCTTAGCTTTTGTGTTTTCAAAATTAC--CCATTTTTGTTCTAAAAAT---ATTCCCTTGATTTTATTTTAGGCATGCTATCT-GTGTATTTTGAAATTTAAAATAACATTAAAAGAGAAATGAAATTA----GTTTGAGAAAGAGTTAAAAGGTTAAAACAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102161406 426 + 121039945 TTATTAAGGTGAATAGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAATAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGGAATGGAAGATGCGCAGGCTAGACTGGTCTTGGCAAGTCTT-CTG---------GGGGGAAGT-ACAGCATGTGGAAGGGTAGGAAGCCGAAGGAATCTCAAGCAAGGGAAAGGTGTGGGCAGAGCCCCAGAGGACAGAACAGTTTGTGGTGGACTTGGTGTCCACATAGATCTAATCAGTGGTCTTAGCTTTTGTGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATTCCCTTGATTTTACTTTAGGCATGCTATCT-GGGTATTTTGAAATTTAAAATAACATTAAAGGAGAAATGAAATTATTTTGTTTGAGAAAG--TTAAAAGGTTAAAACAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108535155 428 - 170124641 TTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTTTCTGCAAAATAATTTGGGTTTGTGAATGCAAGGATGCCTTTGGTTATCTGGAATGGAAGATTTGCAGGCTACAG-GGTCTTGGCAAGTCTT-CTG---------GGGGGAAATAACAGTATTTGGAAGGGTAGGAAGCAGAAGGAATGTCAGGCAAGGGAAATGTGTGGGCAGAGCCCCAGAGGGCAGAACAGGTTGTGGAGGACTTGGTGTCCACATAGACCTAATCAGTGGTCTTAGCTTTTGTGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATTCCCTTGATTTTATCTTAGGCATGCTATTT-GTGTATTTTGAAATTTAAAATAACATTAAAGGAGAATTGAAATTGTTTTGTTTGAGAAAGAGTTAAAAGGTTAAAACAT
i rheMac3.chr7              C 0 M 4688
s macFas5.chr7              107364043 427 - 171882078 TTATTAAGCTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAACAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGAAATGGAAGATGTGCAGGCTAGAGTGGTCTTGGCAAGTCTT-CTG---------GGGGGAAAT-ACAGCATTTGGAAGGGTAGGAAGCAAAAGGAATCTTAGGCAAGGGAAAGGTGTGGCCAGAGCCCCAGAGGAGAGAACAGTTTGTGGTGGACTTGGTGTCCACGTAGATCCAATCAGT-GTCTTAGCTTTTGTGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATTCCTTTGATTTTATTTTAGGCATGCTATCT-GTGTATTTTGAAATTTAAAATAACATTAAGGGAGAAATGAAATGATTTTGTTTGAGAAAGAGTTAAAAGGTTAAAACAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              48635 427 +    130206 TTATTAAGCTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAACAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTATCTGAAATGGAAGATGCGCAGGCTAGAGTGGTCTTGGCAAGTCTT-CTT---------GGGGGAAAT-ACAGCATTTGGAAGGGTAGGAAGCAAAAGGAATCTTAGGCAAGGGAAAGGTGTAGCCAGAGCCCCAGAGGAGAGAACAGTTTGTGGTGGACTTGGTGTCCACGTAGATCCAATCAGT-GTCTTAgcttttgtgttttcaaaattacCACAGTTTTTGTTCTAAAACTATCATTCCTTTGATTTTATTGGAGGCATGCTAtct-gtgtattttgaaatttaaaataacattaagggagaaatgaaatgattttgtttgagaaagagtTAAAAGGTTAAAACAT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18031161 423 + 132174527 TGATTAGTGTGAATGGTCTACAGCAGAAGTTTTTAGATGC----CTTCTCTGCAAATAAATTTG---------ATACAAGGATATCTTTGGTTATCTGGAATGGAAGATGTGCAGGCTAGAGTGGTCTT-GCAAGTCTT-ATGTGGGGTGGAGGGGGGAAG-ACGGCATTTGGAAGAGTAGGAAGCAGAAGGAATCTCAGGCAAGGGAAAGGTATGGGCAGAGCCCTGGAGGACAGAACAATTTGTGGTGGACTTGGTGTCCACATAGACTTAATCAGTAATCTTAGCTTTTGTGTTTTCAAAATTGCCACAGTTTTTCTTCTTAAACTGTCAACCTCTTGATTTT----TAGGCATGATATTT-ATGTATTTTGAAATTTAAAATAACATTAAAGGAGAAATGGAATTATTTTGTTTGAGAAAGAGTTAAAAGGGTAAAAAAT
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 73087 411 -  40214260 -TAATAATGATAATGGTCTACAATAGAAGTTTTTAGATTCCTTACTTTTCTG-----TAATTTGGTTTAGTCAACACAAGGAGGCATTTGGGTAGCCAGAATGCAAAATCTGTATACTAGAATGGTCTTGGCAAGCTTTACTG---------GAGAAAGAT-ACGGCATTTGGAAAAGTAGGGAGCCAAAAGAATGTCAGGCAAGGGAAAGACATGGGCAGAATTCCAGAGGACAAAAAAGTTTGTAATGGCCTTGGTGTTCA---------GACTTGTGGTCTTAGCTTATGTATTTTCAAGATT-----TATCAGTCTTCTATAATT---ATTCCCTTGATTTTATTTTAGGCATGATATTTAATATATTTTGAAGGTCAAAATAACATTAAAGGAGAAATGAAATTATTTTGTTTGAGGAAGGGTTAAAAGGTTGAATAAT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=4431.000000
s hg38.chr15_KI270850v1_alt    207675 2 +    430880 CT
s panTro4.chr15              17730730 2 -  99548318 CT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10068807 2 +  10928107 CT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102161832 2 + 121039945 CT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107364470 2 - 171882078 CT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              49062 2 +    130206 CT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18031584 2 + 132174527 TT
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 73498 2 -  40214260 CT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108535583 4688 - 170124641 M

a score=18516.000000
s hg38.chr15_KI270850v1_alt    207677 7 +    430880 TGATCTA
s panTro4.chr15              17730732 7 -  99548318 TGAGCTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10068809 7 +  10928107 TGATCTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102161834 7 + 121039945 TGATCTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108540432 7 - 170124641 TGATATA
i rheMac3.chr7              M 4688 C 0
s macFas5.chr7              107364472 7 - 171882078 TGATCTA
i macFas5.chr7              C 0 I 317
s papAnu2.JH685126              49064 7 +    130206 TGatcta
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18031586 7 + 132174527 TTATCTA
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 73500 7 -  40214260 TGATCTA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=9828.000000
s hg38.chr15_KI270850v1_alt    207684 3 +    430880 AAT
s panTro4.chr15              17730739 3 -  99548318 AAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10068816 3 +  10928107 AAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102161841 3 + 121039945 AAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108540439 3 - 170124641 AAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107364796 3 - 171882078 AAT
i macFas5.chr7              I 317 C 0
s papAnu2.JH685126              49071 3 +    130206 aat
i papAnu2.JH685126          C 0 I 324
s calJac3.chr10              18031593 3 + 132174527 AAT
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 73507 3 -  40214260 AAT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=669450.000000
s hg38.chr15_KI270850v1_alt    207687 280 +    430880 ---AATTTTCTAATGGGAGATTT--GGTACATCCCCAGAAGTTGTCTTTGGTTCAGAGAACAGTCTTCAGACCTAGAA--AGGACTTGAGGAGTCCCAGAGAGGAGCCAC-ATGGTGTGAACCATTCGATTCTCACAACAGAATGGATAAGAACAATTTCAACCATGAA---ACCGTGCAGATGTTCA-TATTTTGAATAGGGTAAGATCGGTGCCATTGTCAGAGGAAAAACTCCTGGCCATCACAGGTTGGGAGAGAAAGTTTCCATTGTAAAGAACACTCAAATGCCAT
s panTro4.chr15              17730742 280 -  99548318 ---AATTTTCTAATGGGAGATTT--GGTACACCCCCAGAAGTTGTCTTTGGTTCAGAGAACAGTCTTCAGACCTAGAA--AGGACTTGAGGAGTCCCAGAGAGGAGCCGC-ATGGTGTGAACCATTCGATTCTCACAACAGAATGGATAAAAACAATTTGAACCATGAA---ACCATGAAGATGTTCA-TATTTTGGATAGGGTAGGGTCAGTGCCATTGTCAGAGGAAAAACTCTTGGCCATCACAGGATGGGAGAGAAAGTTTCCATTGTAAAGAATACTCAAATGCCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10068819 277 +  10928107 ---AATTTTCTAATGGGAGATTT--GGTGCATCCCCAGAAGTTGTCTTTGGTTCAGAGAACAGTCTTCAGACCTAGAA--AGGACTTGAGGAGTCCCAGAGAGGAGCCGC-GTGGTGTGAACCATTTGAGTCTCACAACAGAGTGGATAAGAACAGTTTGAGCCATGAA---ACCATGCAGATGTTCA-TATTTTGGGTAGGGAAAGGTCAGTGCCATTGTCAGAGGAAAAACTCTTGGCCATCACAGGA---GGGAGGGAGTTTCCATTGCAAAGAACACTCAAATGCCAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102161844 280 + 121039945 ---AATTTTCTAATGGGAGATTT--GGTACATCCCCAGATGTTGTCTTTGGTTCAGAGAACAGTCTTCAGACCTAGAA--AGGACTTGAGGAGTCCCAGAGAGGAGCCTC-ATGGTGTGAACCATTTGATTCTCACAACAGAATGGATAAAAACAATTTGAACCACGAA---ACCATGCAGATGTTCA-TATTTTGGATAGGGTAGGGTCAGTGCCATCGTCAGAGGAAAAACTCTTGGCCATCACAGGATGGGAGAGAAAGTTTCCATTGTCAAGAATACTCGAATGCCAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108540442 273 - 170124641 ---AATTTTCTAATGGGAGATTT--GGTACATCCCTAGAAGTTGTCTTTGGTTCAGAGAACAGTCTTCAGACTTAGAA--AGGACTTGAGGAGTCCCAGAGAGGAACTGC-ATGGTCTGAACCGTTTGATTCTCACAACAGAATGCATAAAAACAATTTGAACCATGAA---ACCATGCAGATGTTCA-TATTTTGGATAGGGTAAGGTCAGTGCCATTGTCAGAGGAAAAACCCTTGGCCATCACAGGATGGGAGAGAAAGTTTCCGTCGTAAAGAATAC-------TCAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107364799 273 - 171882078 ---AATTTTCTAATGGGAGATTT--GGTACATCCCCAGAAGTTGTCTTTGGTTCAGAGAACAGTCTTCAGTCTTAGAA--AGGACTTGAGGAGTCCCACAGAGGAGCCAC-ATGCTGTGAACCATTTGATTCTCACAACAGAATGGATAAAAATAATTTGAACCATGAA---ACCATGCAGATGTTCA-TATTTTGGATAGGGTAAGGTCAGTGCCATTGTCAGAGGAAAAACCCTTGGCCATCACAGGATGGGAGAGAAAGTTTCCGTCGTAAAGAATAC-------TCAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              49398 280 +    130206 ---aatttTCTAATGGGAGATTT--GGTCCATCCCCAGAAGTTGTCTTTGGTTCAGAGAACAGTCTTCAGGCTTAGAA--AGGACTTGAGGAGTCCCACAGAGGAGCCAC-ATGCTGTGAaccatttgattctcacaacagaatggataaaaataatttgaaccaTGAA---ATCATGCAGATGTTCA-TATTTTGGATAGGGTAAGGTCAGTGCCATTGTCAGAGGAAAAACCCTTGGCCATCACAGGATGGGAGAGAAAGTTTCCGTCGTAAAGAAGACTCAAATATCAT
i papAnu2.JH685126          I 324 C 0
s calJac3.chr10              18031596 271 + 132174527 ---GATTTCCTAATGGGAGATTCGAGGTACATCCTTAGAACTTGTCTTTGGTGCAGAGAGTAATCTTAAAGTCTAGAA--AGAGCTTGAGGAGTCTCAGAGAGGAGATCC-ATGGTCAGAACCATTTGATTCTCACAACAGAATGGATAAAAACAATTTGAACCATAAA---AGTATGCAGATGTTCA-TATTATGCATAGGATAAGGTCAATGCCATTGTCAGGGGAATAACTCTTGACTGT-----------AGAGAAAGTTTCAGATGTAAAGAACACTTGAATGCCAT
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 73510 262 -  40214260 AACGATTTCCTAA-GAGAAATCT--GGGAGATTTCCAGAAGTTGTC--TGGTTCAGAGAACAGTTCTCAGGATTGGAAAGAGAAATTGAGGAGTCCCAGAGAAGGGACTCTATGGTGAGAACCACTTGATCCTCACAAAGAGATGGATGAAAACAATTTAAACCACAAAAATACCATGTC-ATGTTCATTATTACAGATGGGGCAAAACTGGTGTCATTGGCTAA--CATAACTGTT-----------------AGAGAAATTTTCAGATGAATGTAATACTC-----CCAT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=261730.000000
s hg38.chr15_KI270850v1_alt    207967 97 +    430880 TTAAGGAAATGGGTTCTTCTGCCCTGATTCTTTGGAATATTTAGGGCCACGTTTTTAGTTTTTGACATCAT-AAAAATTTCAAAGTATTCTGT-TCTGA
s panTro4.chr15              17731022 94 -  99548318 TTAAGGAAATGGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGCCAAGTTCTTAGTTTTTGA---CAT-AAAAATTTTAAAGTATTCTGT-TCTGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10069096 97 +  10928107 TTAAGGAAATGGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGCCAAGTTCTTAGTTTTTGACATCAT-AAAAATTTCAAAGTACTCTCT-TCTAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102162124 97 + 121039945 TTAAGGAAATGGGTTCTTCTGCCCCTATTCTTTGGAGTATTTAGGGCCACGTTCTTAGTTTTTGACATCAT-AAAAATTTGAAAGTATTCTGT-TCTGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108540715 97 - 170124641 TGAAGGAAACGGGTTCTTCTGCCCCTATTCTTTGGATTATTTAGGGCCAAGTTCTTAGTTTTTGACATCAT-CAAAATTTCAAAGTATTCTGT-TCTAA
i rheMac3.chr7              C 0 I 1090
s macFas5.chr7              107365072 97 - 171882078 TGAAGGAAACGGGTTCTTCTGCCCTTATTCTTTGGATTATTTAGGGCCAAGTTCTTAGTTTTTGACATCAT-CAAAATTTCAAAGTATTCTGT-TCTAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              49678 97 +    130206 TGAAGGAAACGGGTTCTTCTGCCCTTATTCTTTGGATTATTTAGGGCCAAGTTCTTAGTTTTTGACATCAT-CAAAATTTCAAAGTATTCTGT-TCTAG
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18031867 98 + 132174527 TTAAGGAAACTGGTTTTTCTGCCCCTATTCTTTGGAATATTTAGGGCTAAATTCTTAGTTACTGACATCATAAAAAATCTGAAAGTATTCTGT-CCTAA
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55194707 90 + 124595110 TTAAGAAAACAGATTCTTTTGCTCCTGTTCTCTGGGATGTTTGGAGCCAAGTTTTTAATTTTTGACATCAG-AAAAGTTT---AGTATTCTGT-T----
i mm10.chr9                 I 813 C 0
s canFam3.chr30                 73772 66 -  40214260 ----------------------------TTCCTGGGATATTCAGGAGTAAGTTCCTAGTTTCTGATATCCT-TAGATT----AAGTATTCTGTCTCTAA
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074218 217 -  24206276 I

a score=897764.000000
s hg38.chr15_KI270850v1_alt    208064 341 +    430880 TTGCCATTTCAAACAATTGACTGGAATTTCAGAGCAATTTCATAAGAGTAATACCATTAGAATTTTTAAATTACCTATAATCCTATATGCCTAACAAGTATGTTCATGCTTACGTGTTCTCTTCTTGTCTTTAC-TGTGTGCATACTTTCTTAATAATGCCACATGGAAATTGTTTAAGCAGGAATACT--TCTCAAGATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATGGAACCTCT---------GGTGATT-ATTTTATTATTATACTC--AATTTTCACCCTCAATAGAGTGTTTTGATTATG-TAAGTTAGATCGTAAGT
s panTro4.chr15              17731116 350 -  99548318 TTGCCGTTTCAAACAATTGACTAGAATTTCAGAGCAATTACATGAGAGTAATACCATTAGAATTTTTAAATTACCCATAGTCCTATATGCCTAACAAGTATGTTCATGCTTACGTGTTCTCTTCTTATCTTTAC-TGTGTGCCTACTTTCTTAATAATGCCACATGGAAATTGTTTAAGCAGGAATACT--CCTCAAGATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTGTTGGGTGGAGGAGCATTATATATGGAACCTCTCACAAAACAGGTGATT-ATTTTCTTATTATACTC--AATTTTCACCCTGAATAGAGTGTTTTGATTATG-TAAGTTAGATCGTAAGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10069193 349 +  10928107 GAGCCATTTCAAACAATTGACTAGAATTTCAGAGCAATTACATGAGAGTAATAGCATTAGAATTTTTAAATTACCCATAGTCCTATATCCCTAACAAGTATGTTCATGCTTGCATGTTCTCTTATCATCTTTAC-TGTGTACATACTTTCTTAATAATGCCACATGGAAATTGTTTAAGCAGGAATAGT--TCTCAAGACAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATTGAACCTCTCACAAAACAGGTGA-T-ATTTTCTTATAATACTA--AATTTTCACCCTCAATAGAGTGTTTTGATTATG-TAACTTCGATCGTAAGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102162221 345 + 121039945 TTGCCATTTCAAACAATTGACTAGAATTTCAGAGCAATTACAGAAGGGTAATACCATTAGGATTTTTAAATTACCCATAGTCCTATATCCCTAACAAGTATGTTCATGCTTGCGTGTTC-----TTATCTTTAC-TGTGTGCATACTTTCTTAATAATGCCACGTGGAAATTGCTTAAGCAGGAATAAT--TCTCAAGATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTGTTGGGTGGAGGAGCATTATGTATGGAACCTCTCACAAAACAGGTGATT-ATTTTCTTATCATACTC--CATTTTTACTCTCAATAGAGTGTTTTGATTATG-TAAGTTAGATCGTAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108541902 350 - 170124641 GAGCCATTTCAAACAATTAACTAGAATTTCAGAGGAATTACATGAGAGTAATACCATTAGAATTTTTAAATTATCCATAGTCCTATATCCTTAACAAGTATGTTCATGCTTGCATATTCTCTTCTTATCTTTAC-TTTGTGCGTACTTTCTTAATAATGGCACATAGAAATTGTTTAAGCAGGAATAAC--TCTCAAGATAATTTTATATG-TTTCCTTTTTTCTTTTT-AAGGTATATATTGGGTGAAGGAGCATTATGTATGGAACCTCTCACAAAACAGGTGATT-ATTTTCTTATAATACTC--AATTTTCACCCTCAATAGAGTGTTTTGATTATG-TAAGTTAGATCATAAGT
i rheMac3.chr7              I 1090 C 0
s macFas5.chr7              107365169 350 - 171882078 GAGCCATTTCAAACAATTAACTAGAATTTCAGAGCAATTACATGAGAGTAATACCATTAGAATTTTTAAATTATCCATAGTCCTATATCCCTAACAAGTATGTTCATGCTTGCATATTCTCTTCTTATCTTTAC-TTTGTGTGTACTTTCTTAATAATGGCACATAGAAATTGTTTAAGCAGGAATAAT--TCTCAAGATAATTTTATATG-TTTCCTTTTTTCTTTTT-AAGGTATATATTGGGTGAAGGAGCATTATGTATGGAACCTCTCACAAAACAGGTGATT-ATTTTCTTATAATACTC--AGTTTTCACACGCAATAGAGTGTTTTGATTATG-TAAGTTAGATGGTAAGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              49775 347 +    130206 GAGCCATTTCAAACAATTAACTAGAATTTCAGAGCAATTACATGCGAGTAATaccattagaatttttaaattatccataGTCCTATATCCTTAACAAGTATGTTCATGCTTGCATATTC---TCTTATCTTTAC-TTTGTGTGTACTTTCTTAATAATGGCACATAGAAATTGTTTAAGCAGGAATAAT--TCTCaagataattttatatg-tttccttttttcttttt-aaggtatATATTGGGTGAAGGAGCATTATGTATGGAACCTCTCACAAAACAggtgatt-attttcttataatactC--AATTTTCACACGCAATAGAGTGTTTTGATTATG-TAAGTTGGATGGTAAGT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18031965 347 + 132174527 GAACCATTTGAAAACATTGACTAGAATTTCAGAGGTATGACATTAGTGTGCTAATGTTAGAATTTTTAAATTACCCGTAGTCCTGTATCCCTAACAACTGTTTGCATGTTTACATGGTATTTTCTCATCTTTACTTGTGTGTGTATTTTCTTAGTAATGGCACTTAGAAATTGTTTAAGGAAGAATAAT--TCTCAAG--AATTTCGTGTG-ATTACTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATGGAACTTCTCACGAAACAGGTGA---ATTTTCTTACGGTACTC--CATTTTCACCCTCAATTTAGTGTTTTGGTAATG-TAAATTAGATTGTAAGT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55194797 302 + 124595110 -------------CAACTTATTTGA----CAAGTTGATTATATTAGAGTAATGACTATAAACATTTGAAATTGGCCGCAGTCTTATGTCTCTAACAACAGTTTTTATTTTGGTATATTATCTTCTAATTT-----TGTGTGAGTACTGTCTTAGTAATG------------TACTTAAGTA-------T--TTTAAGGAGGATTTTGTATG-CTTGCTTTCCTTTTTTTAAAGGTATGTGTTGGGTGGAGGAGCACTTTGTATGGAACTTCTCACAAAACAGGTAACT-CTT--------GTGTAC--AGTTCTTAGCCTTAGTGGACTATTTT-CCTAGA-TAAGATGGATTCTAAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 73838 337 -  40214260 GAACTATTT-------TTTTTTTTAATT--AAGACAGTTATA---AAGCAATGACATTAGAATTGTTTAACTATCCTTAGTCCTGGAACCCTAACCACTATTCTCATTTTTGGATGTTATCTTCTAACCTTGAC-T-TGTATGTA-TTCCTAAGTGGTGGTACTTTAAA------TAAAAAGGAACGCTGACATTTAGAGAATTAAATATGATTTCCTTTTCTCTTTTT-AAGGTATGTGTTGGGTGGTGGAGCACTATGTATGGAACTTCTCACAAAACAGGTGACTGGTTTTCTTGTGGTACTCCTGTTTTTCAATTTCGGTGGAGTGTTTTGATGATGTTAAATTAGATTCTGAGT
i canFam3.chr30             C 0 I 73
e chlSab2.chr29              21074218 217 -  24206276 I

a score=14176.000000
s hg38.chr15_KI270850v1_alt    208405 10 +    430880 AGACGGTT------------------CT
s panTro4.chr15              17731466 10 -  99548318 AGATGGCT------------------AT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10069542 10 +  10928107 AGAAGGTT------------------AT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102162566 10 + 121039945 AGACGGTT------------------CT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108542252 10 - 170124641 AGAAGGTT------------------CT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107365519 10 - 171882078 AGAAGGTT------------------CT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              50122 10 +    130206 AGAAGGTT------------------CT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18032312 28 + 132174527 AGAAAGTTCTTCTGTAATAGTTCCTACT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55195099 10 + 124595110 GGAAAGAT------------------CT
i mm10.chr9                 C 0 I 35
e canFam3.chr30                 74175 73 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=103411.000000
s hg38.chr15_KI270850v1_alt    208415 63 +    430880 CTTAAAGACATTTTAGTGTTTTTTT------------------TTTTTTTCGTAGCTCCTACTTTCAAGAATGAAAAAGGT
s panTro4.chr15              17731476 79 -  99548318 CTTAAAGACATTTTAGTGGTTTTTTGTTTGTT--TTGTTTTGCTTTTTTCTGTAGCTCCTACTTTCAAGAATGAAAAAGGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10069552 65 +  10928107 CTTAAAGACATttttgttttgttttgt----------------tttgttttgtAGCTCCTACTTTCAAGAATGAAAAAGGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102162576 80 + 121039945 CTTAAAGACA-TGTAGTGgttttttttttgtttgtttgtttttgttttttcgtAGCTCCTACTTTCAAGAATGAAAAAGGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108542262 66 - 170124641 CTTAAAGACATTTTAGTG---TTTTTGTT------------TGTTTGTTTTGTAGCTCCTACTTTCAAGAATGAAAAAGGT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107365529 79 - 171882078 CTTAAAGACATTTTAGTGGGTTTTTTGTTGTT--GCTGTTGTTTTTTCTTCATAGCTCCTACTTTCAAGAATGAAAAAGGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              50132 79 +    130206 CTTAAAGACATTttagtgggttttttgttgtt--gctgttgttttttcttcataGCTCCTACtttcaagaataaaaaaagg
i papAnu2.JH685126          C 0 I 1
s calJac3.chr10              18032340 58 + 132174527 CTTAAAGAAATTTTAGTT-----------------------TATTTTTTATATAGCTCCTACTTTCAAGAATGAAAAAGGT
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55195109 35 + 124595110 I
e canFam3.chr30                 74175 73 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=302560.000000
s hg38.chr15_KI270850v1_alt    208478 297 +    430880 atcccagcagtttgggaggctgaggcaggcggatcacgaggtcaagagatcgagaccatcctggctaacacggtgaaaccccgtctctac-taaaaaatac--aaaaaaaatagccgggcgtgatggcgggtgactgtagtcccag---------------------------------ctacccgggaggctgaggcaggagaattgtgtgaacccgggaggcagagcttgcagtgagctgagatggtgccaccgcactccagcctgggtgacagagcaagactccatctca----aaaaaacaaaacaaaacaaaacaaaaaaaacaGAATGAAA
s panTro4.chr15              17731555 281 -  99548318 atcccagcagtttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctttac-taaaaaatac--aaaaaaattagccaggcgtgatggcgggcgactgtagtcccag---------------------------------ctactcgggaggctgaggcaggagaatggcgtgaacccgggagacagagcttgcagtgagctgagatggtgccactgcactccagcctgggtgacagagtgagactccatctca----aaaaaa----------------aaaaaaaaaagaatgaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10069617 280 +  10928107 atcccagcagtttgggaagctacggcaggtagatcacaaggtcaggagattgagactgtcctggctaacacagtgaaaccctgtctctacttaaaaaatac--aaaaaaattagccgggcatggtggcagttgcctgtagtcccag---------------------------------ctactcgggaggctgaggcaggagaatggtgtgaatctgggaggcagagcttgcaatgaaccaagatggccccactgcactccagcctgggtgacagagtgagactccatctca----aaaaaa----------------aaaaagaaaaaa--gaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102162656 295 + 121039945 atcccagcagtttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctac-taaaaaatacaaaaaaaaatcagccgggtgtgatggcgggcgcctgtagtcccag---------------------------------ctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagtggagatggcgccactgcactccagcctgggtgacagagtgagactccatctca----aaaaaa----aaaaaaaaaaaaaaaaaaaaaaaaaaGGAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107365608 324 - 171882078 atcccagcactttgggaggccaaggtggatggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccgcgtctctactaaaaaaata-gaaaaaaaattagctgggcgtgatggcagactcctgtagtcccagtagtagagtcaaccacttttaggcagcccccc-gtacttgggaggctgaggcaggagagtggcatgaacctgggagacagagcttgcagtgagctgagatggtaccactgcactccagcctgggcaactgagtgagactccatctcaaaataaataa-----------ataaataaataaataaaataaaA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              50212 322 +    130206 atcccagcactttgggaggccaaggtggatggatcacgaggtcaggagattgagaccatcctggctaacatggtgaaaccccgtctctactaaaaaaataccaaaaaaaattagccgggcgtgatggcagactcctgtagtcccagtagtAGAGTCAACCACTTTTAGGCAGCCCCcctgtacttgggaggctgaggcaggagaatggcatgaacccaggagacagagcttgcagtgagctgagatggtaccactgcactccagcctgggcaactgagtgagactccgtctca----aaataa-----------ataaataaataaataaaatcaaa
i papAnu2.JH685126          I 1 C 0
e mm10.chr9                  55195109  35 + 124595110 I
e calJac3.chr10              18032398   0 + 132174527 C
e canFam3.chr30                 74175  73 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108542328   0 - 170124641 C

a score=8522.000000
s hg38.chr15_KI270850v1_alt    208775 5 +    430880 AAGGC
s panTro4.chr15              17731836 5 -  99548318 aaGGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10069897 5 +  10928107 aaaGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102162951 5 + 121039945 AAGGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107365932 5 - 171882078 AACAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              50534 5 +    130206 aaggt
i papAnu2.JH685126          C 0 C 0
s mm10.chr9                  55195144 5 + 124595110 AAGGT
i mm10.chr9                 I 35 C 0
s canFam3.chr30                 74248 5 -  40214260 AAGGC
i canFam3.chr30             I 73 C 0
e calJac3.chr10              18032398 0 + 132174527 C
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108542328 0 - 170124641 C

a score=1347252.000000
s hg38.chr15_KI270850v1_alt    208780 453 +    430880 AAACCAGTAAAATAACATTGTGCTTGGTGCTGAATTTATGCTAGGATAGGCGT--TAACAGTGACCTTTATTTAAGGTTTTAATTTGTTCATGTTGGGCACTTAGAACATTGG-TTTGTTG------TTTTTTTGT----------------------------------------GAGATTCTGGAAACGTTCCAATTTTACCTTTTCCCCTTGACTCCAGACTTTTT-AACACTGGTCTGCTACTGTTAAG------TTATATGCCATTTGGTTAGGCCTTCTCAAGTGGGAACCAGGAACGCTGCTGTGTTCTAGAGATGTTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCGATAGAATCAGTCATCATGCAAATAAAAGCCACCTGAGTCAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAGGTAATTTTATTAAGAATTTTACATAAACCATAAGAT------------ATATTTTATGCTACTTTGTGAGCCTTCTTCCTATCTT
s panTro4.chr15              17731841 456 -  99548318 AAACCAGTAAAATAACATTGTGCTTGGTGCTGAACCTATGCTAGTATTGGCAT--TAACACTGACCTTTATTTAAGGTTCTAATTTGTTCATGTTGGGCACTTAGAACATCGG-TTTGTTG---TTTTTTTTTTGT----------------------------------------GAGATTCTGGAAACATTCCAATTTTACCTTTTCCCCTTGACTCCAGACTTTTT-AACACTGGTCTGCTACTGTTAAG------TTGTATGCCATTTTGTTAGGCCTTCTCAAGTGGGAATCAGGAACGCTGCTGTGCTCTAGAGATGTTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCGATAGAATCAGTCATCATGCAAATAAAAGCCACCTGAGTCAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAGGTACTTTTATTAAGAATTTTACATAAACCATAAGAT------------ATATTTTATGCTACTTTGTGAGCCTTCTTCCTATCTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10069902 452 +  10928107 AAACCAGTAAAATGACACTGTACTTGGTGCTGAATCTATGCTAGGATAGGCAT--TAAGAGTGACCTTTATTTAAGGTTCTAATTTGCTCATGTTGGGCACTTAGAACATCGG-TTTGTTG-------TTTTTTGC----------------------------------------GAGATTCTGGAAATGTTCCAATTTTACGTTTTCCCCTTGACTCCAGACTTTTT-AACACTGGTCTGCTGCTGTTAAG------TTATATGCCATTTTGTTAGGCCTTCTCAAGTGGGAATCAGGAACGCTGCTGTGCTCTAGAGATGTTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCGATAGAATCAGTTATCATGCAAATAAAACCCACCTGAGTCAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAGGTACTTTTATTAAGAATTTTACATAAACCGTAAGAT------------ATATTTTATATCACTGTGTGAGCCTTCTTCCTGTCTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102162956 453 + 121039945 AAACCAGTAAAATGACATTATACTTGGTACTGAATCTATGCTAGGATAGGCAT--TAACAGTGATCTTTATTTAAGGATCTAATTTGCTCACGTTGGGCACTTAGAAAATCGG-TTTGTTG------TTTTCTTGT----------------------------------------GAGATTCTGGAAACGTTCCAATTTTACCTTTTCCCCTTGACTCCAGACTTTTT-AACACTGGTCTGCTGCTGTTAAG------TTATATGCCATTTTGTTAGGCCTTCTCAAGTGGGAATCAGGAATGCTGCTGTGTTCTAGGGATGTTTTGTTCTTCCTGTAGGGCTGAAGAAGTGCCTACTCGAAAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGGCAAAGCCAGAGTGTAGCTTGGAGCAAAGGAGGTACTTTTATTAAGAATTTTACATAAACCATAGGAT------------ATATTTTATGTTAGTTTGTGAGCCTTCTTCCTGTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108542328 452 - 170124641 AAACCAGTAAAATGACATCGTACTTGGTGCTGAATCTATGCTTGGATAGGCAT--TAAGAGTGACCTTTATTTAAGGTTCTAACTTGTTCATGTTGAGCACTTAGAACATTGG-TTTATTG-------TTTTTTGT----------------------------------------GAGATTCTGGAAATGTTCCAATTTTACTTTTTCCCCTTGACTCCAGACCTTTT-CACACTGATCTGCTGCTGTTGAG------GTATATGCCTTTTCGTTAGGGCTTCTCAAGTGGAAATCAGGAATGCTGCTGTGTTCTAGAGATGTTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCCATAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGGCAAAGCCAACGTGCAGCTTGGAGCAAAGAAGGTACTTCTATTAAGaattttatataaattataagat------------atattttatattaCTTTGTGAACCTTCTTCCTGCCTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107365937 452 - 171882078 AAACCAGTAAAATGACATTGTACTTGGTGCTGAATCTATGCTAGGATAGGCAT--TAAGAGTGACCTTTATTTAAGGTTCTAATTTGCTCATGTTGGGCACTTAGAACATTGG-TTTGTTG-------TTTTTTGT----------------------------------------GAGATTCTGGAAATGTTCCAATTTTACTGTTTCCCTTTGACTCCAGACTTTGT-AACACTGGTCTGCTGCTGTTAAG------TTACATGCCATTTTGTTAGGGCTTCTCAAGTGGGAATCAGGAATGCTGCGGTGTTCTAGAGATGTTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCCATAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGACAAAGCCAAAGTGCAGCTTGGAGCAAAGAAGGTACTTCTATTAAGAATTTTACATAAACCATAAGAT------------ACATTTTATATTACTTTGTGAGCCTACTTCCTGTCTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              50539 452 +    130206 aaaccagtaaaatGACATTGTACTTAGTGCTGAATCTATGCTAGGATAGGCAT--CAAGAGTGACCTTTATTTAAGGTTCTAATTTGCTCATGTTGGGCACTTAGAACAtcgg-tttgttg-------ttttttgt----------------------------------------gagATTCTGGAAATGTTCCAATTTTACTGTTTCCCCTTGACTCCAGACTTTGT-AACACTGGTCTGCTGCTGTTAAG------TTATATGCCATTTTGTTAGGGCTTCTCAAGTGGGAATCAGGAATGCTGCTGTGTTCTAGAGATGTTTTATTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCCATAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGACAAAGCCAAAGTGCAGCTTGGAGCAAAGAAGGTACTTCTATTAAGAATTTTACATAAACCGtaagat------------acattttatattactttgtGAGCCTACTTCCTGTCTT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18032398 501 + 132174527 AAACCAGTAAAATGACATTGTACTTGGTGCTGAATCTATGCTAGGATAGGAAT--TAAGAATGACCTTTATTTAAGGTTCTAATTTGCTCATGTTGGGCACTTGGAACATAGG-TTTGTTGTTGTTGTTGTTTTGTGTGTGTGTGTgagagagagagagagagaatgagagagagagagaTTCTGGAAATGGGCCAATTTTACTTTTCCCCCTTGACTAGAGACTTTTTAAATATTGATTTGCTGCTGTTGAG------TTACATGCCATTTTGTTAGGCTTTCTCAAGTGGGAATCAGAAATGCTGCCATATTTTAGAGATGTTTTGTTCTTCCTATAGGGCTGGAGCAGTGCCTACTCCATAGAATCGGTCATCATGCAAATAAATGCCACTTTAGTCAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAGGTACTTTTATTAAGAATTTTACATAAACCATAATATA-----------ATACTTAATATTACTTTATGAGGCCTCTTCCTGTCTT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55195149 448 + 124595110 AAAGTAGTAAGTTGTTGTTGTACTTGGAGCTTGTTCCATGCTGGAACAGCCAT--TGAGAGTGATGTTAATCTGAAATTATAATCTCCTCA-GT--GGCATTTAGAACAGGGG-------G-------TGGTTTGT----------------------------------------GAGATTATAGAAGTGGCCCAGTGT-----TTTTCCTGTCACTACAGATTTGTT-AGCACTGATTTGCTGTTGTTGGGGTCCTCCTCTGTGATGTTTTACTAGGTTTTTCTGAATGGGAATTGTGAAGACTGCTGAGTT-TAGATGCACCTTGTTCTTCCCACAGGGCTGGAGCAGTGCCTACTCAATAGAATCTGTCATCATGCAGATCAATGCCACCTTAGTGAAAGGCAAAGCCCGGGTGCAGTTTGGAGCAAATAAGGTACTT-GACGAAGAACTCCACAGACGTGCTGGGGTGCCCAGGCTAGCATGCCTCACATC------TGAGGCATCTTCCTGTCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 74253 452 -  40214260 AAACCAATAAAATGACATTGTACTTGGTGCTTAATCTATGCAAGGATAGGTGTTCTGAGAGCGATGTTTCTATAAGGTTATAATTTGCTCATGTTTGATACTTAGAACATAGAttttgtttttgtttttgttttAC----------------------------------------AAGATTTTTAGAAAG-TCCAACTTTACTTTTTTCTCTTGTATACAGACTTCTT-AACATTGTCTTGCTGTTGTCAAG---CTGCTACGTGCCATTT---TAAGTTTTCCCAAGTGGGAATCAAGAGTACCACTGTGTT---------TTTTCTTCTTCCTGTAGGGCTGGAGCAGTGCCTACTCAATAGAATCAGTCATCATGCAGATCAATGCCACCTTAGTGAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAGGTACCTTTATTAAGAAGATCACATAAATGATAATAC------------ATGTTTTCTGTTACCTTATGAGACATCTTCTTGTTCT
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074218 217 -  24206276 I

a score=45821.000000
s hg38.chr15_KI270850v1_alt    209233 24 +    430880 AATTCTTTT-TGAGAGAAttcattt
s panTro4.chr15              17732297 24 -  99548318 AATTCTTTT-TGAGAGAATTCATTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10070354 24 +  10928107 AATTATTTT-TGAGAGAATTCATTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102163409 24 + 121039945 AATTCTTTT-TGAGAGAATTCATGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108542780 24 - 170124641 AATTCTTTT-TGAGGTAATTCACTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107366389 24 - 171882078 AATTCTTTC-TGAGAGAATTCATTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              50991 24 +    130206 AATTCTTTC-TGAGagaattcattt
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18032899 21 + 132174527 AATTCTTTTATTAGATAGTT----T
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55195597 23 + 124595110 GATTCTATT-TTTAA-AAtttattt
i mm10.chr9                 C 0 I 3487
e canFam3.chr30                 74705  0 -  40214260 C
e chlSab2.chr29              21074218 217 -  24206276 I

a score=218922.000000
s hg38.chr15_KI270850v1_alt    209257 115 +    430880 cattttcatttggtttgttttcttttTGTTACAAAG-ATGATCTATAGAACATATAGAAGTATAAGAAAATTAAAGTTACTAACTGATAATCACTTAATGATTTAGTATCTGATTG
s panTro4.chr15              17732321 115 -  99548318 CATTTTCATTTGGTTTGTTTTCTTTTTGTTACAAAG-ATGATCTATAGAACATATAGAAGTATAAGAAAATTAAAGTTACTAACTGATAATCACTTAATGATTTAGTATCTGATTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10070378  97 +  10928107 CATTTCCATT------------TTTTTGTT--AAAG-ATGATCTATAGAAAATATAGAAGTGTATGAAAATTAAAGAT----ATTGATAATCACTTAATGATTTATTATCTGATTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102163433 113 + 121039945 CATTTTCATTTGGTTTGTTTTCTTTTTGTTACAAAG-ATGATCTATAGAAAATATAGAAGTATAAGAAAATT--AGTTACTAACTGATAATCACTTAATGATTTAGTATCTGATTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108542804 115 - 170124641 CATTTTCATTTGGCTTGTTTTCTTTTTGTTACAAAG-ATGATCTATAGAAAATATAGAAGTATAAGAAAATTAAAGATACTAACTGATAATTGCTTAATGATATAGTATCTGATTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107366413 111 - 171882078 CATTTTCATTTGGTTTGTTTTCTCTTTGTTACAAAG-ATGATCTATAGAAAATATAGAAGTATAAGAAAATTAAAGACACTGACTAATAATCACTTAATGATTTAGTATC----TG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51015 115 +    130206 cattttcatttggtttgttttctctttgttacaAAG-ATGAtctatagaaaatatagaagtataagaaaattaaagacaCTGACTAATAATCACTTAATGATTTAGTATCTGATTG
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18032920 103 + 132174527 CATTTTCATTTGGTTTGTTTTC---TTGTTACAAAATGTGATCTATAGAAAATATAGAAGTATAAGAAAATTAAAAGT----ACTGATAATTGCTTAATGATTTAGTATC------
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55195620 3487 + 124595110 I
e canFam3.chr30                 74705   0 -  40214260 C
e chlSab2.chr29              21074218 217 -  24206276 I

a score=846640.000000
s hg38.chr15_KI270850v1_alt    209372 375 +    430880 TTTAGTCTTTGTTATATTTACTGTAGAGAAACATGTCTACAGTTGTAAATTTATTATTGTTATGTATACCA-----TAG-----TAAAAGTTATATGTACTTTGAAGTTTTGCAAAATTGAGTTCATGTTATAA-AATTAATTCCTGATGAACTTTTATGTGCTAGGCACTAGTCTTTTTATTTA----CTTATTTTTACTT-TTTTTGTTTCCCTCTGTGCCTATGCTTACCAAG---TCTTTTTA-TTTTTtactttttattagctctttcagtcctcttaataactttaaaagagggtattattaatatctgcattttatggatgagacaactgaagg----------taggtaacttgt----ccaaagt-cacaggtggcagagcaaggattggaaccagacagt
s panTro4.chr15              17732436 375 -  99548318 TTTAGTCTTTGTTATATTTACTGTAGAGAAACATGTCTACAGTTGTAAATTTATTATTGTTATGTATACCA-----TAG-----TAAAAGTTATATGTACTTTGAAGTTTTGCAAAATTGAGTTCATGTTATAA-AATTAATTCCTGATGAACTTTTATGTGCTAGGCACTAGTCTTTTTATTTA----CTTATTTTTACTT-TTTTTGTTTCCCTCTGTGCCTATGCTTACCAAG---TCTTTTTA-TTTTTTACTTTTtattagctctttcaatcctcttaataactttaaaagagggtattattaatatctgcattttatggatgaggcaactgaagg----------taggtaacttgt----ccagagt-cacaggtggcagagcaaggattggaaccagacagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10070475 364 +  10928107 TTTAGTCTTTGTTATATTTACTGTAGACAAACATGTCTACAGTTGTAAATTTATTATTGGTATGTATACCC-----TAG-----TAAAAGTTATATGTACTTTGAAGTTTTTTAAAATTGAGTTCACATTATAG-----AATTCCTGATGAACTTTTATGTGCTAGGCACCAGTCTTTTTAT--------TTATTTTTACTT-TTT---TTTCCCTCTGTGCCTATGCTTGCCAAG---TCTTTTTATTTTTTTACTTTTtattagctctttcaatcctcctaataacttaaaaagagggtattataaatatctgcatttt-tgggtgaggtaactgaagg----------taggtaacttgt----ccaaggt-cacaggtggcagagcaaggattggaaccagacagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102163546 376 + 121039945 TTTAGTCTTTCTTATATTTACTGTAGAGAAACATGTCTACAGTTGTAAATTTCTTATTGTTATGTGTACCG-----TAG-----TAAAAGTTATATGTACTTTGAAGTTTCACAAAATTGAGTTCATGTTATAG-AATTAATTCCTGATGAACTTGTATGTGCTAGGCACTAGTCtttttattta----tttatttttactt-tttttcttttCCTCTGTGCCTATACTTATCAAG---TCTTTTTATTTTTTTACTTTTtattacctctttcaatcctcttaataactttaagagagggtattattaatatctgcattttatggatgaggcaactgaagg----------taggtaacttgt----ccaagat-cacaggtggcagagcagggattggaaccagacagt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108542919 363 - 170124641 TTTCGTCTTTATTATATTTACTGCAGACAAACATGTCTACAGTAGTTAATTTATTATTGGTATGTATATTC-----TAG-----TAAAAGTTATATGTACTTTGAAGTTTTACAAAATTGAGTTCATGTTATAG-AATTAATTCATGATGAACTTTTATGTGCTAGGCACTAGTCTTTTTATTTA----TTTATTTTTACTTCTTT---TCCCCctctgtg----------ccaag---tcttttta-ttttttactttttattaactatttcaatcctcttaataacttaaaaatagggtattattagtatcagcattttgtggatgaggcaactgaagg----------taggtaacttgt----ccaaggt-cacaggtggcagatcaaggattggagccagacagc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107366524 367 - 171882078 TTTAGTCTTTGTTATATTTACTGTAGACAAATATGTCTACAGTTGTAAATTTATTATTGGTATGTATACCC-----TAG-----TAAAAGTTATATGTACTTTGAAGTTTTGCAA-----AGTTCATGTTATAG-AATTAATTCCTGATGAACTTTTATGTGCTAGACACTAGTCTTTTTATTTA----TTTATTTTTACTT-TTT---TTCCCCTCTGTGCCTATGCTTACCAAG---TCTTTTTA-TTTtttacttctcactagctctttcaatcctcttaataacttaaaaagagggtattattaatatctgcattttatggatgaggcaactgaagg----------caggtaacttgt----ccaaggt-cacaggtggcagagcaaggattggaatgagacagc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51130 367 +    130206 TTTAGTCTTTGTTATATTTACTATAGATAAACATGTCTACAGTTGTAAATTTATTATTGGTATGTATACCC-----TAG-----TAAAAGTTATATGTACTTTGAAGTTTTGCAA-----AGTTCATGTTATAG-AATTAATTCCTGATGAACTTTTATGTGCTGGACactagtctttttattta----tttatttttactt-ttt---tttccctctgtgcctatgcttaccaag---tcttttta-ttttttacttttcactaGCTCTTTCAATCCTCTTAATAACTGAAAAAGAGGGTATTATTAATATCTGCATTTTATGGATGAGGCAACTGAAGG----------Caggtaacttgt----tcaaggt-cacaggtGGCAGAGCAAGGATTGGAATGAGACAGC
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18033023 391 + 132174527 TCTTCTTTTTGTTATATTTGCTGTAGATAAACATGTCTACAGTTGTAAATTTGTCATTGGTATGTATACCCAAATATGT-----TAAAAATTATATGTACTTTGAAGTTTTAAAAAATTGAGTTCATGTTATAG-AAT-AATTCCTGGTAAGCTTTTATTTGCTAGGCTCTAGTCtttttatttatatgtttattattactt-ttt---ttt--ctttgtgcctatgcttaccaagattttttttta-tcttttattttttattaactctttcaatcctcttaataacttaaaaagtaggtactattgttatatgcattttgtagatgaggcaactgaaggatacagaagttagataacttgt----ctaaggt-cacaagtggcagagcaaggattggaaccatgcagt
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 74705 328 -  40214260 TCTAGTCTTTGTTATTCTTACTATAGGTAAACATGTCTATAATTTGAAGTCTT------GTATGTATATGC-----TAATGAGTTAAAAATTATATGTACTTTAAAGATTGCCGAAATTGAGATCATGTTataatagttaattcccagtgagcatttatatgctaggctctgatct-------------aaactttttactt-gta----------------------------gg---------ta-------------------ctatttcagtccttttactgac-agaagagtaggtaatattatcgtcctcattttgtggatgaggaaactgaagcacatggaggttagataacgcatgtaggtaaggtggacaggtggcagaatgaggattggaaccagacggc
i canFam3.chr30             C 0 I 1664
e mm10.chr9                  55195620 3487 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=56913.000000
s hg38.chr15_KI270850v1_alt    209747 24 +    430880 ctgactgccctaggcccaaccaag
s panTro4.chr15              17732811 24 -  99548318 ctgactGCCCTAGGCCCAACCAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10070839 23 +  10928107 ctggctGCCCTAGGCCCAA-CAAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102163922 24 + 121039945 ctgactgccctaggccCAACCACG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543282 24 - 170124641 ctgactGCCCTAGGCCCAACCAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107366891 24 - 171882078 ctgactgccctaggccctacCAAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51497 24 +    130206 TTGACTGCCCTAGGCCCTACCAAG
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18033414 24 + 132174527 ctggctGCCCTAGCCCCAGCCAAG
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 76697 24 -  40214260 CTTGCTCTCGTAGGCTCAGCCAGC
i canFam3.chr30             I 1664 C 0
e mm10.chr9                  55195620 3487 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=362027.000000
s hg38.chr15_KI270850v1_alt    209771 118 +    430880 AGGAGCTGAGAGCAAGCCACGGGG-CAGAAGGATGTTGG--AGGCTGGTTTTCTGTTCAGTTAACATGAAATGCAGGCTGTAACCGTAATTCCAGG--ACATTACTGAGAAAGCCTTCCAAAG
s panTro4.chr15              17732835 118 -  99548318 AGGAGCTGAGAGCAAGCCACGGGG-CAGAAGGATGTTGG--AGGCTGGTTTTCTGTTCAGTTAACATGAAATGTAGGCTGTAACCTTAATTCCAGG--ACATTACTGAGAAAGCCTTCCAAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10070862 118 +  10928107 AGGAGCTGAGAGCAAGCCATGGGG-CAGAAGGATATTGG--AGGCCGGTTTTCTGTTCAGTTAACATGAAATGCAGGCTGTAACCTTAATTCCAGG--ACATTACCGAGAAAGCCTTCCAAAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102163946 118 + 121039945 AGGAGCTGAGAGAAAGCCATGGGG-CAGAAGGATGTTGG--AAGCTGGTTTTCTGTTCAGTTAACATGAAATGCAGGCTGTAACCTTAATTCTAGG--ACATTACTGAGAAAGCCTTCCAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543306 120 - 170124641 AGGAGCTGAGAGCAAGCCATGGGG-CAGAAGGATGTTGGTCAGGCTGGTTTTCTGTTCAGTTAACATGAAACGCAGGCTGTAATGTTAATTCTAGG--ACATTACTGAGAAAGCTTTCCAAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107366915 120 - 171882078 AGGAGCTGAGAGCAAGCCATGGGG-CAGAAGGATGTTGGTCAGGCTGGTTTTCTGTTTAGTTAACATGAAATGCAGGCTGTAACCTTAATTCTAGG--ACATTACAGAGAAAGCCTTCCAAAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51521 120 +    130206 AGGAGCTGAGAGCAAGCCATGGGG-CAGAaagatgttggtcaggctggttttctGTTTAGTTAACATGAAATGCAGGCTGTAACCTTAATTCTAGG--ACATTACAGAGAAAGCCTTCCAAAG
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18033438 115 + 132174527 AGGAGCTGAGGGCAAGCCATGAGG-CATAAGAATGTTGGTCAGACTAATTTTCT-----GTTAACGTGAAACATAGGTTGTAACGTTAATTTTAGG--ACATTAGCAAGAAAGCCTTCCAAAG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55199107 121 + 124595110 AGGAG-TGAGAACAAGTCATGGAGTTAGAAGGATGTAGGCCAGGGT-GTTTCCTGTTCAATTACTAGGAAATAAAGTCTGTAGCATTAACTTGGGGCTATACAAATAATAAATTCTTTCAGAG
i mm10.chr9                 I 3487 I 117
s canFam3.chr30                 76721 122 -  40214260 AGGAGCTGAGAGTAAGCCATGGGG-CAGAAGGATGTCGGCCAGGCTGGTTTTCTGGTCAGTTAACATGGGCTACAGGCTGTAACATTAACTCCAGGCTGTAGTAATGAGAAAGCCTTCTAAAG
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074218 217 -  24206276 I

a score=6536.000000
s hg38.chr15_KI270850v1_alt    209889 19 +    430880 CCAGAGGGgtttttttt-------gt
s panTro4.chr15              17732953 19 -  99548318 CCAGAGGGgtttttttt-------gt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10070980 16 +  10928107 CCAGAGG---TTTTtgt-------gt
i ponAbe2.chr15_random      C 0 I 25
s nomLeu3.chr6              102164064 15 + 121039945 CCAGAGG--tttttttt---------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543426 24 - 170124641 CCAGAGGTGtttttttttgtttgt--
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107367035 17 - 171882078 CCAGAGGTTTTCTTTTT---------
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51641 17 +    130206 CCAGAGGTTTTCTTTTT---------
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18033553 13 + 132174527 CCAGATG--TTTCTT-----------
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 76843 12 -  40214260 -TAGAGTTCTTCT-------------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55199228 117 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=3698.000000
s hg38.chr15_KI270850v1_alt    209908 10 +    430880 tttgttttgt
s panTro4.chr15              17732972 10 -  99548318 tttgttttgt
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102164079 10 + 121039945 tttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543450  9 - 170124641 -ttgtttttt
i rheMac3.chr7              C 0 I 1
e mm10.chr9                  55199228 117 + 124595110 I
e calJac3.chr10              18033566  0 + 132174527 C
e canFam3.chr30                 76855  0 -  40214260 C
e chlSab2.chr29              21074218 217 -  24206276 I
e papAnu2.JH685126              51658  0 +    130206 C
e macFas5.chr7              107367052  0 - 171882078 C
e ponAbe2.chr15_random       10070996 25 +  10928107 I

a score=1780.000000
s hg38.chr15_KI270850v1_alt    209918 12 +    430880 tttgtttt-------------CCAT
s panTro4.chr15              17732982 12 -  99548318 tttgtttt-------------CCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10071021 13 +  10928107 tgtgtTTT------------ACCAT
i ponAbe2.chr15_random      I 25 C 0
s nomLeu3.chr6              102164089 12 + 121039945 ----tttttAA---------ACCAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543460 25 - 170124641 tttgttttttttttttttCCACCAT
i rheMac3.chr7              I 1 C 0
s macFas5.chr7              107367052  5 - 171882078 --------------------ACCAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51658  5 +    130206 --------------------ACCAT
i papAnu2.JH685126          C 0 C 0
e mm10.chr9                  55199228 117 + 124595110 I
e calJac3.chr10              18033566  0 + 132174527 C
e canFam3.chr30                 76855  0 -  40214260 C
e chlSab2.chr29              21074218 217 -  24206276 I

a score=477270.000000
s hg38.chr15_KI270850v1_alt    209930 192 +    430880 GACCATGACTTTTGAGCAAAAATTTGGTTTTGTTTAAAGGCAATATGGTGCTCTAAGAAACTTCCACTCACA--CTTATGGAGGGAATGGTAGTTG----AGCTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTAGGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGACACCT----ATCTTTGCCTGCTGCCCACAG
s panTro4.chr15              17732994 192 -  99548318 GACCATGACTTTTGAGCAAAAATTTGGTTTTGTTTAAAGGCAATATGGTGCTCTAAGAAACTTCCACTCACA--CTTATGGAGGGAATGGTAGTTG----AGCTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTAGGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGACACCT----ATCTTTGCCTGCTGCCCACAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10071034 192 +  10928107 GACCATGACTTTTGAGCAAAAATTTGA-TTTGTTCAAAGGAAA-ATGGTACTCTAAGAAGCTTCTACTCACACTCTTATGGAGGGAATGGTAGTTG----AGCTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTAGGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGACACCT----ATCTTTCCCTGCTGCCCACAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102164101 192 + 121039945 AACTATGACTTTTGAGCAAAAATTTGGTTTTGTTTAAAGGCAACATGGTGCTCTAAGAAACTTCCACTCACA--CTTATGGAGGGAATAGTAGTTG----AGCTAAATAGTGAAATGCTGTAGGACA-CAGCCTTTAGGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGACACCT----ATCTTTCCCTGCTGCCCACAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543485 193 - 170124641 GACCAAGACTTTTTAGCAAAAGTTTGATTTTGTTTAAAGGCAACATGGTGTTCTAAGAAGCTTCCACTCACACTCTTGTGGAGGGAATGGTAGTTG----AACTAAATAGTGAAATGCTGCAGCACA-TGGCCTTTA-GGCAGCTTCTGACCTATTTCTATGGTCAGGAGAGACACCT----ATCTTTCCCTGCTGCCCACAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107367057 193 - 171882078 GACCATGACTTTTTAGCAAAAATATGATTTTGTTTAAAGGCAACATGGTGTTCTAAGAAGCTTCCACTCACACTCTTGTGGAGGGAATGGTAGTTG----AACTAAATAGTGAAATGCTGCAGCACA-TGGCCTTTA-GGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGACACCC----ATCTTTCCCTGCTGCCCACAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51663 193 +    130206 GACCATGACTTTTTAGCAAAAATATGATTTTGTTTAAAGGCAACATGGTGTTCTAAGAAGCTTCCACTCACACTCTCATGGAGGGAATGGTAGTTG----AACTAAATAGTGAAATGCTGCAGCACA-CAGCCTTTA-GGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGACACCC----ATCTTTCCCTGCTGCCCACAG
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18033566 186 + 132174527 -ACCATGA-TTTTTAGCAAGAATTTGTAGTT-TTTAAAGGCAAGATAGTGCTCTAAGAAGCTTCCATTCAC-----TATGGAGGGAACGGTAGTTG----AGTTAAATAGTGAAATGCTGGAGCACA-CAGCCTTTAGGGCAGCTTCTGACCTCTTTCTGTGGTCAGGGAAGGCACCT----ATCTTTCCCTGCTGCCCATAA
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55199345 172 + 124595110 gaccctatcttcaaaaCTAAAAACTGAAT-------AAAGCAAGCTAATGTGTTAAA-------CATGCATG---TTACAGAGGGACCATCTGTCA----AT---GATAGTGAAGTCCTAGAACACA-CAGCCTTGG-GGCAGTGCTGACCCTGTTTCTGCAATCAGGATAGGAGCCT-----TCTGTTGCTGCCACCTACTG
i mm10.chr9                 I 117 I 26
s canFam3.chr30                 76855 178 -  40214260 -ATTATGACTT---GGCAAGAATTTGGGGTT-TGGATAGGCAAGGT-----------------TCATTCAC---CGCATAGAAGGCATGATAGTTGGGGTAAATAAATAGTCAAATCCTAGAGCACAGCAACTGTTGGAGTAGCTCCTAAACTATTTCTACAATCAGGAAAGGCACCAATAAATCATTCCCTGTTGCCCATAG
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074218 217 -  24206276 I

a score=8764.000000
s hg38.chr15_KI270850v1_alt    210122 3 +    430880 CCT
s panTro4.chr15              17733186 3 -  99548318 CCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10071226 3 +  10928107 CCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102164293 3 + 121039945 CCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543678 3 - 170124641 CCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107367250 3 - 171882078 CCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51856 3 +    130206 CCT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18033752 3 + 132174527 CCT
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 77033 3 -  40214260 ACT
i canFam3.chr30             C 0 I 281
e mm10.chr9                  55199517 26 + 124595110 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=171235.000000
s hg38.chr15_KI270850v1_alt    210125 77 +    430880 CTAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGATGAGAGATCCGTTTTGTTTT-TTCCAGGGTAG
s panTro4.chr15              17733189 77 -  99548318 CTAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGATGAGAGATCCGTTTTGTTTT-TTCCGGGGTAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10071229 78 +  10928107 CAAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATGTCATTCAGATGAGAGATCTGTTTTGTTTTATTCCAGGGTAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102164296 77 + 121039945 CTAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGATGAGAGATCTGTTTTGTTTT-TTCCAGGGTAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543681 77 - 170124641 CCAGCTATTCACCTTCAGAATTTCCCAGTCTGTGATCACATTCCGATGAGAGATCTGCTTCGTTTT-TTCCAGGGTAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107367253 77 - 171882078 CCAGCTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCCGATGAGAGATCTGCTTTGTTTT-TTCCAGGGTAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51859 77 +    130206 CCAGCTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCCGATGAgggatctgttttgtttt-ttccagggtAG
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18033755 76 + 132174527 CCAGTCATTCTCTTACAGAATCCCCTAGACTGTGATCATATTCAGATGAGAGATCTGTTTTGTTT--TTCCAGGGTAG
i calJac3.chr10             C 0 C 0
e mm10.chr9                  55199517 26 + 124595110 I
e canFam3.chr30                 77036 281 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=1338743.000000
s hg38.chr15_KI270850v1_alt    210202 609 +    430880 CAGGAAGTGAGTCACCACCTATACTAAGCAGTCTAGTCTTCTGTGTATAAATGAGCAAGGGTGGGGAGCCAGATCTGAGAACCTTGTGTAATGCTGAGATGCTCCAAGAGAATCCAAGAGGATGTCAGGATTATGCATGGTGGtaaagtggtctcatgttagttgtacccacagctctcatcagaagcagacacagatactttttgtaggaaaacatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaaata-tgaattcagtcaaatcatagcattcaagtagtctcaacccaacatatttgagaattgttagaaacaatg---aa----tatgt-----ttcccaaagac--taggttttggaattatcagat------acag----aacacagacttcaaatattagaattgtgagaaaatagttac-------atgtcaaacctaatata---aaagaaagatggactcattaaattgagcaa-cagaaaggccaccaggaatgaggaggaggacctgaa----aagaaaatggatgaactagaacttacag----------aaataaaatatatagctgggtctggtggctcacacctgtaat--cccagcactgtttgggaggccgaggtgggaggatggta
s panTro4.chr15              17733266 609 -  99548318 CAGGAAGTGAGTCACCACCTATACTAAGCAGTCTAGTCTTCTGTGTATAAATGAGCAAGGGTGGGGAGCCAGATCTGAGAACCTTGTGTAATGCTGAGATGCTCCAAGAGAATCCAAGAGGATGTCAAGATTATGCATGGTGGtaaagtggtctcatgttagttgtacccacagctctcatcagaagcagacacagatactttttgtaggaaaacatctctaacttaagcctgtatgattcccaaagattaaaagcaggcaaata-tgaattcagtcaaatcatagcattcaagtagtctcaacccaacatatttgagaattgttagaaacaatg---aa----tatgt-----ttcccaaagac--taggttttggaattatcagat------acag----aacacagacttcaaatattagaattgtgagaaaatagttac-------atgtcaaacctaatata---aaagaaagatggactcattaaattgagcaa-cagaaaggccaccaggaatgatgaggaggacctgaa----aagaaaatggatgaactagaacttacag----------aaataaaatatatagctgggtctggtggctcacacctgtaat--cccagcactgtttgggaggccgaggtgggaggatggta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10071307 607 +  10928107 CAGGAACTGAGTCACCACCTATACTAAGCAGTCTAGTCTTCTGTGTATAAATAAGCAAGGTTGGGGAGCCAGATTTGAGAACCTTGTGTGATGCTGAGATGCTCCAAGAGAATCCGAGAGAGTGTCAAGATTATGCATGGTGGtaaagtggtctcat----gttgtaaccacagctctcatcagaagcagacacagatactttttgtaggaaaacatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaaata-tgaattcagtcaaatcatagaattcaagtagtctcaacccaacatatttgagaattgttagaaacaatg---aa----tatgt-----ttcccaaagactgtaggttttggaattatcagat------acag----aacacagacttcaaatattagaactgtgagaaaatagttac-------atgtgaaacctaatata---aaagaaagatggactcataaaattgagcaa-cagtaagaccaccaggaatgatgaggaggccctgaa----aagaaaatggatgaactagaacttacag----------aaataaaatatatagctgggtctggtggctcacacctgtaat--cccagcactctttgggaggctgaggtgggagggtggta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102164373 612 + 121039945 CAGGAACTGAGTCACCACCTATACTAAGCAGTCTAGTCTTCTGTGTATAAATGAGCAAGGTTGGGGAGCCAGATTTGAGAACCTTGTGTAATGCTGAGATGCTCCAAGAGAATCCAAGGGAATGTCAGGATTATGTATGGTGGTCTagtggtctcatgttagttgtacccagagttctcatcagaagcagacacagatactttttgtaggaaagcatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaaata-tgaattcagtcaaatcatagcattcaagtagtctcaacccaacatatttgagaattgttagaaacaatg---aa----tatgt-----ttcccaaagac--taggttttggaattatcagat------acag----aacacagacttcaaatattagaattgtgagaaaatagttac-------atgtgaaacctaatata---aaagaaagacggactcataaaattgagcaagcagtaagaccaccaggaatgatgaggaggacctgaa----aagaaaatggatgaaatagaacttacag----------aaataaaatatatagctggatctggtggttcacacctgtaatcccccagcactctttgggaggctgaggtgggaggatggta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108543758 612 - 170124641 CAGGAAGTGAGTCACCACCTGTACTAAACAGTCTAGTCTTCTGTGTATAAATGAGTAAGGTTGGGGAGCCAAATTTGAGAACCTTGTGTAATCCTGAGATTCTCCAGGAGAATCCAAGAGCATGTCAGGATTATGCATGGTGGtaaagtggtctcatgttagttgtatccacagctctcgtcagaagcagacacagatactttttgcaagaaggcatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaatta-tgaattcagtcaaatcatagcattcaaatag--tcaacccaatgtatttgagaattgtcagaaacaatgaataa----tacgt-----ttcccaaagactgtagg-tttggaattatcagat------acag----aacacagacttcaaatattagaattgtgagaaaatagttac-------atgtgaaatctaataca---aaaaaaagatgaagtcataaaattgagcaagcagtaagaccaccaaaaacgatgaggggtacctgaa----aagaaaatggatgaaatagaacttACag----------aaataaaatatatagctgggtatggtgactcatacctgtaat--cccagcactctttgtgaggctgaggtgggaggacggta
i rheMac3.chr7              C 0 I 100
s macFas5.chr7              107367330 614 - 171882078 CAGAAAGTGAGTCACCACCTGTACTAAGCAGTCTAGTCTTCTGCGTATAAATGAGCAAGGTTGGGGAGCCAAATTTGAGAACCTTGTGTAATCCTGAGATTCTCCAAGAGAATCCAAGAGCATGTCAGGATTATGCATGGTGGtaaagtggtctcatgttagttgtatccacagctctcatcagaagcagacacagatattttttgtaggaaagcatctctaacttaagcctgtaggattcccgaagattaaaagcaggcaacta-tgaattcagtcaaatcatagcattcaagtagtctcaacccaacatatttgagaattgtcagaaacaatgaataa----tatgt-----ttcccaaagactgtaggttttggaattatcagat------acag----aacacagacttcaaatattagaatggtgagaaaatagttac-------atgtgaaacctaatata---gaagaaagatggactcataaaattgagcaaccagtaagaccaccaggaatgatgaggaggacctgaa----aagaaaatggatgaaatagaacttacagaaataaaataaaataaaatatatagctgagta-----------acctgtaat--cccagcactctttgggaggctgaggtgggaggatggta
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              51936 614 +    130206 CAGGAAGTGAGTCACCACCTGTACTAAACAGTCTAGTCTTCTGTGTATAAATGAGCAAGGTTGGGGAGCCAAATTTGAGAACCTTGTGTAATCCTGAGATTCTCCAAGAGAATCCAAGAGCATGTCAGGATTATGCATGGTGATAAAGTGGTCTCATGTTAGTTGTATCCACAGCTCTCATCAGAAGCAGACACAGATATTTTTTGTAGGAAAGCATCTCTAACTTAAGCCTGTAGGATTCCCGAAGATTAAAAGCAGGCAACTA-TGAATTCAGTCAAATCATAGCATTCAAGTAGTCTCAACCCAACATATTTGAGAATTGTCAGAAACAATGAATAA----TATGT-----TTCCCAAAGACTGTAGGTTTTGGAATTATCAGAT------ACAG----AACACAGACTTCAAATATTAGAATGGTGAGAAAATAGTTAC-------ATGTGAAACCTAATATA---GAAGAAAGATGGACTCATAAAATTGAGCAACCAGTAAGACCACCAGGAATGATGAGGAGGACCTgaa----aagaaaatggatgaaatagaacttacagaaataaaataaaataaaatatatagctgagta-----------acctgtaat--cccagcactctttgggaggctgaggtgggaggatggta
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18033831 568 + 132174527 GAGGAAGTGAGTCACCACCTATGCTAAGCAGTCTAATCT-----GTGTAGATGAGCAAGGTTGGGGAGCCAAAT---------------------------CTCTTGGAGAATC----------TCAGGATTATGCAAGATGGtaaagtagtctcatgttagtggtatctgcaacttttatcagaagcagacacagatgctttatataggaagggatctctaatttaagcctgtaggattcccagagtttagaagcaggcaaata-tgaattcagtcaaatcatagcattcag------tcaacccagcatatttgagaattgtcagaaacaataaataatagttatgt-----ttcccaaagactgtaggttttagaattatcagat------acag----a--acagacttcagatactagaattatgagaaaatagttac-------atgtgaaatctaatataaagaaaaaaagatggaatcataaaattgagcaagcagcaagcccatcaggaatgataaggaagacctgaa----aagaaaatggatgaaatatagcttacag----------aaataaa--ctatagctgggtatggtagctcatgcctgtaat--cccagcac--tttgggaggccaaggcaggaggatggct
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55199543 528 + 124595110 CGGGGAGTGACTAATC---------------CCTGGCCCTGTATTCATAAGTGA-----GTTGTGCTGCCAAATATAGGAGCCT-------------GATTCTCCA------------------CAGGGGCTATTC------------TGATCCCATGTTAACTGTATTCTCAGCTCTCACCAGAAGCAGACTAA----TCCTCTAGAGAAAAGTGTTTCTAACTGAAGCTTGTAGGCTTCCCAAGGATTAAAATCAAACAAATAGGGAGTTCAGTTAAAG-ATCACAACTAGG-----CCACCCAGGCAC-----AGAAATGACAGAAAT-ATGAATGT----TATATACATGTCCCCAAGGACT---GGTTCTTGAAATATCAGATCTCAAGATAGGGGTAAGGGATAgctgaggttgtagctgagtggtaaagtgcctacttagcatgtgttcaatccccagcg---cctcaaaG-------CACAAAGCAGAACAA--AATAAAAACTGCAGTTAT-------------TGAAATGCAATAAAATAGTTATATGAAATGTCAGAG----------GAAGAAA----ATagctaagta-aatggtcatatgttataac--ccctgcact-tagagaagatggagacagtaggat----
i mm10.chr9                 I 26 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=128279.000000
s hg38.chr15_KI270850v1_alt    210811 83 +    430880 tgagcccaggagttggggagacaagcctgggcaacatggtg------agaactcgtttctgtaaaaaatacccc-aacacca----ccaaaaaa
s panTro4.chr15              17733875 83 -  99548318 tgagcccaggagttggggagacaagcctgggcaacatggtg------agaactcgtttctgtaaaaaatacccc-aacacca----ccaaaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10071914 81 +  10928107 tgagcccaggagtt--ggagacaagcctgggcaacatagtg------agaactcgtttctgtaaaaaatacccc-aacacca----ccaaaaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102164985 84 + 121039945 tgagcccaggagttggggagacaagcctgggcaacatggtg------agaactcgtttctctaaaaaataccctaaacacca----ccaaaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107367944 81 - 171882078 tgagcccaggagtt--ggagacaagcctgggcaacatggtg------agaactcatttctataaaaaatacccc-accacca----ccaaaaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              52550 81 +    130206 tgagcccaggagtt--ggagacaagcctggacaacatggtg------agaactcatttctataaaaaatacccc-accacca----ccaaaaaa
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18034399 76 + 132174527 tgagcccaggagtt--caagaccagcatgtgcaacatggtg------agaacttgtctctacaaaaaatacccc---ctcca----accaa---
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55200071 85 + 124595110 ------cagaagtt--caaggtaatgtttggctacatagtgggttcaaggccacagtggcctaaacgagattct-atctcaaaaagccaaagaa
i mm10.chr9                 C 0 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108544370 100 - 170124641 I

a score=445610.000000
s hg38.chr15_KI270850v1_alt    210894 236 +    430880 aaaaaaaaaaaaaaaagt----------agctgggtatgg-ggcacgtgtctgtagtcccagctagtcaggaggctgaggagggaggatcacttgagctcaggaggcaagggctgcat--------gtgcatgccactgcagtccagcctgggtgacagagtgagactccgtctc---------agaataaaatgaaataaagaaata--aaaaatgtaattgttgaaataaaaaactcagt---ggatggattagacatcagaagaaa
s panTro4.chr15              17733958 236 -  99548318 aaaaaaaaaaaaaaaagt----------agctgggtatgg-ggcacgtgtctatagtcctagctagtcaggtggctgaggagggaggatcacttgagctcaggaggcaagggctgcac--------atgcatgccactgcagtccagcctgggtgacagagtgagactccgtctc---------agaataaaatgaaataaagaaata--aaaaatgtaattgttgaaataaaaaactcagt---ggatggattagacatcagaagaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10071995 223 +  10928107 aaaaaaaa---------t----------agctgggtatgg-ggcacatgtctatagtcctagctagtcaggaggctgaggtgggagaatcccttgagcccagaaggccaaggctgcag--------gtgtgtgccactgcagtccagcctgggtaacagagtaagactccatctc---------agaacaaaatgaaat----aagta--aaaaatgtgattgtagaaataacaaactcaat---gtatggattagacatcagaagaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102165069 229 + 121039945 aaaaaaaaaa-------t----------agctgggtatgg-ggcacgtgtctatagtcctagctagtcaggaggctgaggagggaggatcacttgagctcaggaggcaaggtctgcac--------gtgcatgccgctgcagtccagcctgggtgacagagtgagactccgtctc---------agaataaaatgaaataaagaaata--aaaaatgtaattgttgaaataaaaaactcagt---ggatggattagacatcagaagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108544470 236 - 170124641 aaaaaaaaaaaaaaaaat----------tgctgggtatgg-ggcacatgcctatagtcccagctagccaggaggctgaggtgggaggatagaccaagcccagaaagccaaggctgcaa--------gtttgtgccactgcagtccagcctgggtgacagagtgagactctgtttc---------agaatacaatgaaatgaagaaata--aaaaatgtgattgttgaaataagacactcaga---ggatggattagacctcagaagaaa
i rheMac3.chr7              I 100 C 0
s macFas5.chr7              107368025 220 - 171882078 -----------aaaaaa------------gctggatatgg-ggcatgtgcctatagttctagctagtcaggaggctgaggtgggaggatcacttgagcgcaggaggccaaggctacag--------gtacatgccactgcagtccagcctgggtgacagactgagactccatctc---------agaatgaaatgacataaagaaata--aaaaatgtaattgttgaaataa---actcagt---ggatggattagacatcagaagaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              52631 230 +    130206 ---aaaaaaaaaaaaaat----------agctgggtatgg-ggcatgtgcctatagttctagctagtcaggaggctgaggtgggaggatcacttgagcgcaggaggccaaggctacag--------gtacatgccactgcagtccagcctgggtgacacactgagactccgtctc---------agagtgaaatgaaataaagaaata--aaaaatgtaattgttgaaataa---aCTCAGT---GGATGGATTAGacatcagaagaaa
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18034475 213 + 132174527 -----------aaaaatt----------agctgggtgtgg-ggtatatgcctatagttccagctactcaggaggctgagttgggaggatcacttgagcccaggaggccaaggctgcagtgaggcatgtttgtaccactgcactccagcctgagtgacag--tgagactctgtctc---------aaaataaaa----------aaaga--aaaaatgtaaccactgaaataagaaactcagt---ag------tagacaccagaag--a
i calJac3.chr10             C 0 C 0
s mm10.chr9                  55200156 251 + 124595110 aAGAAAACATTTAAAAATGGAACCATGAagccaggcgtagtggtgcacgcctttaatcccagc-acttgggaggcagaggcaggcagatttct---------gagttcgaggccagcc--------tggtttacagttccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaaaaAAAAAGTGGAACCATGAAAGACTGGAAATGAAGTTGAGAGATCTGAAGAATCCATACAGAATAGCTTAAAACTGGGGAGAAA
i mm10.chr9                 C 0 N 0
e canFam3.chr30                 77036 281 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=705157.000000
s hg38.chr15_KI270850v1_alt    211130 335 +    430880 gaattaattggttagacaatta-tctcccaa-aagtgagtcagtatgttacacagagagacatgaggatagatgatagggcagaagttggtggggttgtagggggagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggagaTATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAaaggcaatagaaggaagtccacataaatcagtcacaacaaatgtaaatggactaaagttaccagtt----aggtggaactaataaaagaatatccagctg--ttttaatccatcatattt-aaaatataaggatatgagaagatt
s panTro4.chr15              17734194 335 -  99548318 gaattaattggttagacaatta-tctcccaa-aagtgagtcagtgtgttacacagagagacatgaggatagatgatagggcagaagttggtggggttgtagggggagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggagaTATTAAAATTATGTTAGAAAGTGAGAGAAATAGAAGTTCTAAAGGCgatagaaggaagtccacataaatcagtcacaacaaatgtaaatggactaaagttaccagtt----aggtggaactaataaaagaatatccagctg--ttttaatccatcatattt-aaaatataaggatatgagaagatt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10072218 291 +  10928107 gaattaattggttagataatta-tctcccaa-aagtaagccagtatgttacacaga------------------------------------------------gagggagatcagaatgaggtctaaaatatgTCTTAGTGGAATCCCAGGAGGAGATATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAAAGGtgatagaagaaagtccacataaatcagtcacaacaaatgtaaatggactaaagttaccagttagacagatggaactaataaaacaatatccaactg--ttttaatccatcatattt-aaaatatgaggatatgagaagatt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102165298 336 + 121039945 gaattaattggttagacaattattctcccaa-aagtaagtcagtatgttacataga----catgaggatagatgatagggcagaagttggtggggttgtggggggagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggaTATATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAaaggtgataggaggaaatccacataaatcagtcacaacaaatgtaaatggactaaagttaccagttagagagatggaactaataaaagaatatccagctg--ttttaatccatcatattt-aaaatataaggatatgagaagatt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108544706 339 - 170124641 gaatcaattggttagacaatta-tctcccaa-aagtaagtcagtatgttacacagagaggcatgaggatagatgatagggcagaagttggt-gggttgagaggggagggaaatcagaatgaggtctagaatatgtcttagtggaatctcaggaggagatactaaaATTATATTGGAAAGTGAGAGAAATGGAAGTTCTAaaggtgatagaaggaagtccacatcagtcaatcacaacaaatgtaaatggactaaagttaccagttagacagatggaactaataaaacaatatccaaccg--ttttaatcggtcatatttaaaaatatgaggatatgagaagatt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107368245 339 - 171882078 gaattaattggttagacaatta-cctcccaa-aagtaagtcagtatgttacacagagagacatgaggatagataacagggcagaagttggtggggttgtgcagggagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggagaTATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAaaggtgatagaaggaagtccacatcaatcagtcacaacaaatgtaaatggactaaatttaccagttagacagatggaactaataaaacactatccagctg--ttttaatccatcatattt-aaaatatgaggatatgagaagatt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              52861 339 +    130206 gaattaattgGTTAGACAATTA-CCTCCCAA-AAGTAAGTCAGTATGTTACACAGAGAGACATGAGGATAGATGACAGGGCAGAAGTTGGTGGGGTTGTGCAGGGAGGGAAATCAGAATGAGGTCTAAAATATGTCTTAGTGGAATCCCAGGAGgagatattaaaattatattagaaagTGAGAGAAATAGAAGTTCTAAAGGTGATAGAAGGAAGTCCACATCAATCAGTCACaacaaatgtaaatggactaaagtTACCTGTTAGACAGATGGAACTAATAAAACACTATCCAGCTG--TTTTAATccatcatattt-aaaatatgaggaTATGAGAAGATT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18034688 330 + 132174527 gaattaattgattagatgatta-tctcccaacaaataagttagtatgttacatagagagacatgggaatagatgatagggcagaaattgctcaggtgggtagggga--gagatcagaatgaggtccaaaatatgtcttaggggaatcccaggagcagaTATTAGAATTATACTAGGAAGTGAGAGAAATAGAAGTTTTAAAGGTGATTTAAGCAAGTCTACATAAATCAGTCACAACAAATGTAAATGGACTAAAGGTACCAGTT----AGGTTGAATTTATAAAAGAAAATCCAGCTGTTTTTTAATC-ATTATATTT------TTAAAGATACAAAAAGATT
i calJac3.chr10             C 0 I 165
e canFam3.chr30                 77036 281 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=987369.000000
s hg38.chr15_KI270850v1_alt    211465 471 +    430880 gaaagtttttataaaggagagagagtaatgaagatatggcagtatacattaacc-aaaaacaagtgatggagcttcagtat----caaaaaaggattttggaacagaaagcattagtaagaaacttgatgc----tgactgttaattaggaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatgcaggagaaaaactgataaaaccacagggagaaattgacaagtctgccagcatatttggagatttcaccataccctgcttaccataagtaagttacacagaatgcccatatgtagatttgaataaccagtgaatggacatggtgtaatggacaaatataggcctttgtacccaataattaga-tattctatattc-----------------------------------------------ttctcaagcatatgtggactgtgggagaaacattaattatatattaattcgtaaagcaagtcagaagatttaaaaacaattggta
s panTro4.chr15              17734529 471 -  99548318 gaaagtttttataaaggagagagagtaataaagatatggcagtatacattaacc-aaaaacaagtgatggagcttcagtat----caaaaaaggattttggaacagaaagcattagtaagaaacttgatgc----tgactgttaattaggaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatgcaggagaaaaactgataaaaccacagggagaaattgacaagtctgccagcatatttggagatttcaccataccctgcttaccataagtaagttacacagaatgcccatatgtagatttgaataaccagtgaatggacatggtgtaatggacaaatatagacctttgtacccaataattaga-tattctatattc-----------------------------------------------ttctcaagcatatgtggactgtgggagaaacattaattatatattaattcataaagcaagtcagaagatttaaaaacaattggta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10072509 510 +  10928107 gaaagtttttataaa-gagagagagtgataaagatatgccagtatacatt-----------aagtgatggagcttcagtatcaaacaaaaaagcattttggaacagaaagcatgagtaag-aacttgatgc----taaatgactattaggaggatgtggcaattttcctattttatgtacctgtcaaaatagcctcaaaatacagaagaaaaactgattaagccacagggagaaattgacaagtctgccatcatatttggagatttcaccataccctgcttaccataagtaagttacacagaatgcccgtatgtagatttgaataaccagtgaatggacgttgtgtaatggacgaatatagacctttgtacccaataattaga-tattctatattctatagaatattctatattctatattctatagaatattctatattctatattcaagcatatgtggattgtgggagaaacattaattatatattaattcataaagcaagtcagaagatttaaaaacaattggta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102165634 475 + 121039945 gaaagtttttataaacgagagagagtgataaagatatgccagtatacattaacc-aaaaacaagtgatggagcttcagtatcaaacaaaaaaggattttggaacagaaagcattagtaag-aacttgatgctaagtgactgttaattaggaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatacagaagaaaaactgataaaaccacagggagaaattgacaagtctgccgtcgtatttggagatttcaccataccctgcttactgtaagtaagttacacagaatgcccacatgtagatttgaataaccagtgaatggacgtggtgtaatggacaaatatagacctttgtacccaataattaga-tattctatattc--------------------------------------------------ttaagcgtatgtggactgtgggagaaacatgaattatatattaattcataaagcaagtcagaagatttaaaaacaattggta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108545045 479 - 170124641 gaaagtttttataaaggagagagagtgataaagatatgccagtatacattaacc-aaaaacaagtgatggagccttggtatcaaacaaaataggattttggaacagaaagcattagtaag-aacttgatgctaaatgactgttaattaggaggacgtggcaagtttcatattttatgtacctgtcaaagtagcctcaaaatacagaggaaaaactgataaaaccagagggagaaattgacaagtctgccatcgtatttggagatttcagcataccctgcttaccataagtaagttacacagaatgcccatatgtagatttgaataaccagtgaaaggatgtggtataatggacaaatactgacctctgtacacaataattagatttttctatattc-----------------------------------------------ttctcaagcacatgtggactatgggagaaagattaattatatattaatccataaagcaagtcagaagatttaaaaacaattggta
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107368584 474 - 171882078 gaaagattttataaaggagagagagtgataaagatatgccagtatacattaatc-aaaaacaagtgatggagcttcagtatcaaacaaaaaaggattttagaacagaaagtgttagtaag-gacttgatgctaaatgactgttaattaggaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatacagaagaaaaactgataaaaccacagggagaaactgacaagtctgccattgtatttggagatttcaccataccctgcttaccataagtaagttacacagaatgcccacatgtagatttgaataaccactgaataaacatggtgtaatgggcaaatatagacctttgtacccaataattaga-tgttctatatta-----------------------------------------------ttatcaagcatatgtggactgtgggagaaatattaattgtatatt----tataaagcaaatcagaagatttaaaaactattggta
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              53200 474 +    130206 GAAagattttataaaggagagagagtGATAAAGATATGCCAGTATACATTAATC-AAAAACAAGTGATGGAGCTTCAGTATCAAACAAAAAAGGATTTTAGAACAGAAAGTGTTAGTAAG-GACTTGATGCTAAATGACTGTTAATTAGGAGGACATagcaattttcatattttatgtacctgtcaaaatagcctcaaaatacagaagaaaaactgataaaaccACAGGGAGAAACTGACAAGTCTGCCATTGTATTTGGAGATTTCACCATACCCTGCTTACCGTAAGTAAGTTACACAGAATGCCCACATGTAGATTTGAATAACCACTGAATGAACATGGTGTAATGGGCAAATATAGACCTTTGTACCCAATAATTAGA-TATTCTATATTA-----------------------------------------------TTATCAAGCATATGTGGACTGTGGgagaaatattaattatatatt----tataaagcaagtcAGAAGATTTAAAAACTATTGGTA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18035183 461 + 132174527 gaaagtttttataaa----tgagaatgataaagatatgccagtatacattagccaaaaaacaagtgatggagttttagtatcaaacgaaataggattttggaacagaaagcattagt----aacttgaggataaaagtctgttaattaagagaatgtaacaattttcatattttatgta----tcaaaatagcctcaaaatacagaggaaaaacagataaaaccacagggagaagttgacaagtccaccatcatagttggaaatttcagtgtactctgtttaccattagtaagataaacagaatgcccatatgtagatttgaataaccagtgaacaggaatggtattatggacaaatacagacctctgtacccaataattaga-ta---tagatcc-----------------------------------------------ttttcaagtgtgtatagactatggaagaaaaatttattataaatc----tacaaggcaattcagaatatttaaaaacaattggta
i calJac3.chr10             I 165 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=286087.000000
s hg38.chr15_KI270850v1_alt    211936 108 +    430880 ccatcca------caccatataatttataatttaaatatga------agcaattaaggttagaaggcaataatgaagagattaacaaaaagctacatgaatttggaaattaaacaccctt
s panTro4.chr15              17735000 108 -  99548318 ccatcca------caccatataatttataatttaaatatga------agcaattaaggttagaaggcaataatgaagagattaacaaaaagctacatgaatttggaaattaaacaccctt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10073019 108 +  10928107 ccatcca------caccatataatttataatttaaatatga------agcaattaagtttagaaggcaataatgaagagattaacaaaaagctacatgaatttggaaattgaacaccctt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102166109 108 + 121039945 ccatcca------caccatataatttataatttaaatatga------agcaattaaagttagaaggcaataatgaagagattaacaaaaagctacatgaatttggaaattaaacaccctt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108545524 108 - 170124641 cgattca------cgccatgcaatttataatttaaatataa------agcaattaagattagaaggcaataatgaagagattaacaacaagctccattaatttggaaagtaaccaccctc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107369058 108 - 171882078 ccatcca------caccatataatttataatttaaatatga------agcaattaatgttagaaggcaataataaagagattaacaaaaagctacatgaatttggaaattaaacaccctt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              53674 108 +    130206 CCATCCA------Caccatataatttataatttatatatga------agCAATTAATGTTAGAAGGCAATAATAAAGAGATTAACAAAAAGCTACAtgaatttggaaattaaacaccCTT
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10              18035644 108 + 132174527 ccatcca------caccatataatttataatttaaatatga------agcagttaatgttagaaggcagtaatgaagagattaacaaaaatctatagacatttggaagttaaacattctg
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 77317 119 -  40214260 ccatccaggGATCCCCCATA-AATTAATACTTAAAAAACAAGCccatagcagttaaggttagaagtcagtaatgaaaagattaatgaaaatccatatgaatttgtaaattaaacaccatt
i canFam3.chr30             I 281 I 124
e chlSab2.chr29              21074218 217 -  24206276 I

a score=459290.000000
s hg38.chr15_KI270850v1_alt    212044 193 +    430880 gtaattcatgg-tataaaaaactcaatacaattttagaatgcttagaattgaaccatagttaaaatatgaAACTtct--ctctgttcctgtctctctccct-----------------------ctccctctctcttccTATCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACA-CCCCAAATACTGAAAAGTAGGAAAAAGACAGATGGCA
s panTro4.chr15              17735108 193 -  99548318 gtaattcatgg-tttaaaaaactcaatacaattttagaatgcttagaattgaaccatagttaaaatatgaAACTtct--ctctattcctctctctctccct-----------------------ctccctctctctTCCTATCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACA-CCCCAAATACTGAAAAGTAGCAAAAAGACAGATGGCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10073127 194 +  10928107 gtaattcatgg-tttaaaaaactcagtacaattttagaatgcttagaattgaaccatagttaaaatacgaAACTTCT--ATCTGCTCCTCTCTGTCTCCCT-----------------------CTCCCTCCCTCTTCCTATCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCCAAATACTGAAAAGTAGAAAAAGGACAGACGGCA
i ponAbe2.chr15_random      C 0 I 14781
s nomLeu3.chr6              102166217 193 + 121039945 gtaattcatgg-ttgaaaaaactgcatgcaattttagaatgcttagaattgaaccataattaaaatatgaAACTtct--atctattcctctctctctccct-----------------------ctccctccctcctcctgtctGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACA-CCCCAAATACTGAAAAGTAGAAAAAGGACAGATGGCA
i nomLeu3.chr6              C 0 I 4008
s rheMac3.chr7              108545632 194 - 170124641 gtaatgcatggttttaaaaaatccaatgcagttttagaatgcttagaattgaaccatagttaaaatacaaAACTTCT--GTCTATTCCTGTCTCTCACCCT-----------------------CTCCCTCCCTCTTCCTATCTGGAGCATTCAAGAAGCTAATCTTTTTCAGTGAAGGACA-CCCCAAATACTGAAAAATAGAAAAAGAACAGATGTCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              107369166 189 - 171882078 gtaattcatgg-tttgaaaaactcaatgcagttttagaatgcttagaattgaaccatagttaaaatacgaAACTTCT--ATCTATTCCTCTCTCT----CT-----------------------CTCCCTCCCACTTCCTTTCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACA-CCCCAAATACTGAAAAGTAGAAAAAGTACAGATGGCA
i macFas5.chr7              C 0 n 0
s papAnu2.JH685126              53782 189 +    130206 GTAATTCATGG-TTTAAAAAACTCAGTGCAGTTTTAGAATGCTTAGAATTGAACCATAGTTAAAATACGAAACTTCT--ATctatgcctctctct----ct-----------------------ctccctcccacttccTTTCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACA-CCCCAAATactgaaaagtagaaaaagtacAGATGGCA
i papAnu2.JH685126          C 0 I 5506
s calJac3.chr10              18035752 190 + 132174527 gtaaatcatgaatttaaaaagtaaaatgaaattttagaatgctcta---tgaaccataattaaaatacTAAAATTTT--GTCTGTTCCTCTCTCCCCTCCT-----------------------CTCCTTCCCTCTTACTATCTGGAACATTCAAGAAGCTGATCTTTTTCAATGAACAACA-CCTCAAATACTGAAAAGTAG-AAAAGGACAGATGTCA
i calJac3.chr10             C 0 C 0
s canFam3.chr30                 77560 217 -  40214260 ataaatcatgg-ttaaagaatcttatgaatatttaaaaatacttagaactgaaccataatagaaatacTAAAGTtctccctctgtccctctttccttctctatccctttatctatccttcctccctctctctctctctctctttcAAACATTCATGAAACTAATCCTGTTCAGTGAAGAAAA-CTTCAAAT-TTTCGAAGTGGGAAAAGGATAGATGTCA
i canFam3.chr30             I 124 C 0
e chlSab2.chr29              21074218 217 -  24206276 I

a score=5576.000000
s hg38.chr15_KI270850v1_alt    212237 2 +    430880 TT
s panTro4.chr15              17735301 2 -  99548318 TT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10088102 2 +  10928107 TT
i ponAbe2.chr15_random      I 14781 C 0
s nomLeu3.chr6               17168082 2 - 121039945 TT
i nomLeu3.chr6              n 4008 C 0
s rheMac3.chr7              108545826 2 - 170124641 tt
i rheMac3.chr7              C 0 I 4428
s macFas5.chr7              108378690 2 - 171882078 TT
i macFas5.chr7              n 0 C 0
s papAnu2.JH685126              59477 2 +    130206 TT
i papAnu2.JH685126          I 5506 C 0
s calJac3.chr10              18035942 2 + 132174527 tt
i calJac3.chr10             C 0 I 83844
s canFam3.chr30                 77777 2 -  40214260 TC
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074218 217 -  24206276 I

a score=9291.000000
s hg38.chr15_KI270850v1_alt    212239 7 +    430880 TCATGGT
s panTro4.chr15              17735303 7 -  99548318 TCATGGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10088104 7 +  10928107 TCATGGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17168084 7 - 121039945 GCATGGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108378692 7 - 171882078 TCATGGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              59479 7 +    130206 TCATGGT
i papAnu2.JH685126          C 0 C 0
s canFam3.chr30                 77779 7 -  40214260 CTCTGAT
i canFam3.chr30             C 0 N 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I

a score=426792.000000
s hg38.chr15_KI270850v1_alt    212246 341 +    430880 AATCCCTTCCCCCAAGAGTGTAGAATGTTTCTTTAGCTTCTTTGATAGTTTGTTTACTtatttattaagtacttactataaaccagactctgctttaatttgtgatgaacaacctagagattaagtcctgccctatggattttatattagagtgagaaaaacagatagctaagtctggagctcaggggtgaggcccaggttggaattatagattCACTTGACCAAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCCCAGACATACTTCTGGAACATTTCTGTTCTATTCTTGTGTATAAACTCTT-CCTTTTGAGCCTCTCTCCATTAATGCATGT
s panTro4.chr15              17735310 341 -  99548318 AATCCCTTCCCCCAAGAGTGTAGAATGTTTCTTTAGCTTCTTTGATAGTTTGTTTACTtatttattaagtacttactataaaccagactctgctttaatttgtgatgaacaacctagagattaagtcctgccctatggattttatattagagtgagaaaaacagatagctaagtctggagctcaggggtgaggcccaggttggaattatagattCACTTGACCAAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCCCAGACATACTTCTAGAACATTTCTGTTCTGTTCTTGTGTATAAACTCTT-CCTTTTGAGCCTCTCTCCATTGATGCATGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10088111 337 +  10928107 AATCTCTTCCCTCAAGAATGTGGAATATTTCTTTAGCTTCTTTGATA----GTTTATTtatttattaagtacttactataaagcagactctgcattaatttgtggtgaacaagctagagattaagtcctgccctgtggattttatattagagtgagaaagacagatagctaagtctggagctcagggatgaggcccaggttggaattatagattCACTTGACC-AGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCCCAGACATACTTCCAGAACATTTCTGTCCTATTCTTGTGTATAAACTCTTCCCTTTTGAGCCTCTCTCCATTGATGCATGT
i ponAbe2.chr15_random      C 0 I 593
s nomLeu3.chr6               17168091 341 - 121039945 AATCCCTTCCCCCAAGAGTGTGGAAAGTTTCTTTAGCTTCCTTGATAGTTTGTTTATTtatttattaagtacttactataaagcagactctgcattaatttgtggtgaacaagctagagattaagtcctgccctgtgaattttatattagagtgagaaaaacagatagctaagtctggagctcaggggtgaggcccaggttggaattacagattCACTTGACCAAGGTGAAACCTGGTGTGCTGCCTCCTACTTCACATCCCCAGACATACTTGCAGAACATTTCTGTTCTATTCTTGTGTATCAACTCTT-CCTTTTGAGCCTCTCTCCATTGATGCATGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108378699 337 - 171882078 AATCCCTTCCCACAAGAGTGTGGAATGTTTCTTTAGCTTCTTTGATA----GTTTATTtatttattaagtacttactatataccagactctgctttactttgtggtgaacaagctagagattaagtcctgccctgtgtattttatattagagtaagaaagacagatggctaagtctggagctcaggggtgaggctcaggttggaattacagattCACTTGACCGAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCACAGACATACTTCCAGAACATTTCTGTTCTCTTGTTGTGTATAAAGTCAT-CCTTTTGAGCCTCTCTCCATTGATGCATGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              59486 337 +    130206 AATCCCTTCCCGCAAGAGTGTGGAATGTTTCTTTAGCTTCTttgata----gtttatttattttttaagtacttACTATATACCAGACTCTGCTTTACTTTGTGGTGAACAAGCTAGAGATTAAGTCCTGCCCTGTGGATTTTATATTAGAGTAAGAAAGACAGATAGCTAAGTCTGGAGCTCAGGGGTGAGGCTCAGGTTGGAATTACAGATTCACTTGACCGAGGTGAAACCTGGTGTGCCCCCTCCCACTTCACATCCCCAGACATACTTCCAGAACATTTCTGTTCTGTTGTTGTGTATAAAGTCAT-CCTTTTGAGCCTCTCTCCATTGATGCATGT
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I

a score=166627.000000
s hg38.chr15_KI270850v1_alt    212587 197 +    430880 CAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTGCCCATATAACTTGGAGGATATTGAAGAAGAATCATACCGAcctggttctgctacctaccagctgagttactttggtcaagctcttggacttctgaggctgtttcctaatttcaaaagtgggtataTGATGTGTTAGGCCCTGGTGGGTTGCAAGGAAG
s panTro4.chr15              17735651 197 -  99548318 CAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTGCCCATATAACTTGGAGGATATTGAAGAAGAATCATACCGAcctggttctgctacctaacagctgagttactttggtcaagctcttggacttctgaggctgtttcctaatttcaaaagtgggtataTGATGTGTTAGGCCCTGGTGGGTTGCAAGGAAG
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17168432 196 - 121039945 CAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTGCCCATGTAACTGGCAGGACATTGAAGAAGAATCATACTGAcctggttcttctacctaacagctgagttactttggtcaagctcttggacttctgagcctgtttcctaaattcagaagtggggatatgatgtgtta-gccctggtgggttgccaggaag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108379036 197 - 171882078 CAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTACCTATGTAACTGACAGGATATTGAAGAAGAATCATACCAAcctggttctgctacctaacagctgagttacattggtcaagctcttggacttctgagcctgtttcctaatttcaaaagtagtgatatgatatgttaggtcctggtgggttgcaaggaag
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              59823 197 +    130206 CAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTACCTATGTAACTGACAGGATATTGAAGAAGAATCATACCAACCTGGTTCTGCTACCTAACAGCTGAGTTACATTGGTCAAGCTCTTGGacttctgagcctgtttcctaaTTTCAAAAGTAGTGATATGATGTGTTAGGCCCTGGTGGGTTGCAAGGAAG
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I
e ponAbe2.chr15_random       10088448 593 +  10928107 I

a score=41178.000000
s hg38.chr15_KI270850v1_alt    212784 156 +    430880 AGGTACACACATACCACCTTTGATGATGAGGGCCGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCGATATTGTCTCTGGCCCTAGTAATTTCAAAACCTCACAGAATATTAATTTAGCAGTATTTAGGATAGGGTTTGAGCTCTGAAGacct
s panTro4.chr15              17735848 156 -  99548318 AGGTACACACATATCACCTTTGATGATGAGGGCCGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCGATATTGTCTCTGGCCCTAGTAATTTTGAAACCTCACAGAATATTAATTTAGCAGTATTTAGGATAGGGTTTGAGCTCTGAAGACCT
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17168628 156 - 121039945 aGGTACACACATATCACCTTTGAGGATGAGGGCCGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCCATATCGTCTCTGGCCCTAGGACTTTCAAAACCTCACAGAATATTAATTTAGCAGTATTTAGGAGAGGGTTTGAGCTCTGAAGACct
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e papAnu2.JH685126              60020   0 +    130206 C
e macFas5.chr7              108379233   0 - 171882078 C
e rheMac3.chr7              108545828 4428 - 170124641 I
e ponAbe2.chr15_random       10088448 593 +  10928107 I

a score=202978.000000
s hg38.chr15_KI270850v1_alt    212940 257 +    430880 acagtatggttatttgttcatatggctgttttccatactagaccatgaactccatgagggcagggtctacagtttcatctttgtctcctaggcactcagttcagtgcctgatacataataatagaggcacaaatgtttTAAGAGTTGAGGAATTTTCAACTCTTTCTGAAAGAATAGGAAGATATAAAGGCTTCTCAGAGACGGTATTATTTAAGCTGAt-----------------tttgtt--tttgtttttgagatgaagtcttgctctctcg
s panTro4.chr15              17736004 257 -  99548318 ACAGtgtggttatttgttcatatggctgttttccatactagaccatgaactccatgagggcagggtctacagtttcatctttctatcctaggcactcagttcagtgcctgatacataataATAGAGGCACAAATGTTTTAAGAGTTGAGGAATTTTCAACTCTTACTGAAAGAATAGGAAGATATAAAGGCTTCTCAGAGACGGTATTATTTAAGCTGAt-----------------tttgtt--tttgtttttgagatgaagtctcactctgtca
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17168784 276 - 121039945 aaggtgtggttatttgttcatatggctgttttccacactagaccatgagctccatgggggcagggcctacagtttcatctttctatcctaggcactcagttcagtgcctgatacacagtaatagaggcacaaatgtttCAAGAGTTGAGGAATTTTCAACTCTTACTGAAAGAATAGGAAGATATACaggcttctcagagaaggtattatttaagctgttttttgtttgtttgtttgtttgtttgtttgtttttgaggtgaagtctcactctgtcg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108379233 254 - 171882078 atagtgtggttatttgttcatatggctattttccatattggaccatgagctctgtgagggcagggtctacagtttcatatttctatgctaggcactcagttcagtgactgatacacagtaatagaggcacaaatgtttCAAGAGTTGAGGAATTGTTAACTCTTACTGAAAGAATAGGAAGATATAaaggcttctcagagaagatattatttaagc-----------t---------tttttt--tttttttttgagatgaagtctcactctgtca
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              60020 265 +    130206 ATAGTGTGGTTATTTGTTCATATGGCTGTTTTCCATATTGGACCatgagctctgtgagggcagggtcTACACTTTCATATTTCTATGCTAGGCACTCAGTTCAGTGACTGATACACAGTAATAGAGGCACAAATGTTTCAAGAGTTGAGGAATTGTTAACTCTTACTGAAAGAATAGGAAGATATAAAGGCTTCTCAGAGAAGGTATTATttaagctgcttttttttt---------tttttt--tttttttttgagatgaagtctcactctgtca
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I
e ponAbe2.chr15_random       10088448 593 +  10928107 I

a score=556566.000000
s hg38.chr15_KI270850v1_alt    213197 446 +    430880 cccaagatggagtgcaatggcgtgatctcagctcactgcaacctctgcttaccaggttcaagtgattcttctgcctcagtctcctgagtagctgggattacaggcatccaccaccacacccagctattttttgtatttttagtaaagacgaggtttcaccatgttggccaggctagtctcaaactactgatctgaggtgatccgcccaccttggcctcccagagtgctgggattataggcatgagccaccatgcccggcTTatttaagctgattctttaagggtaagtagaaattttttccaggtgaataaaaccttgagctattattccaagcagagaccagtaggtgcaaagacacagggataTAGAGATGTTGAAGTTTACCAAACACTGCTAGattaaaaaaacaaaaaggaaactatcaaaatcaaaaattaaaattaaaa
s panTro4.chr15              17736261 446 -  99548318 cccaagatggagtgcaatggcgtgatctcagctcactgcaacctctgcttgccaggttcaagtgattcttctgcctcagtctcccgagtagctgggattacaggcatccaccaccacacccagctattttttgtatttttagtaaagacgaggtttcaccatgttggccaggctagtctcaaactactgatctgaggtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccggcTTatttaagctgattctttaagggtaagtagaaattttttccaggtgaataaaaccttgagctattattccaagcagagaccagtaggtgcaaagacacagggataTAGAGATGTTGAAGTTTACCAAACACTGCTAGATTAAAAAAACAAAAAGGAAACTATCAAAATCAAAAATTAAAATTAAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10089041 444 +  10928107 cccaagatggagtgcaatggcatgatctcagctcactgcaacctctgcctcccaggttcaagtggttc-tctg-ctcagtctcccaagcagctgggattacaggcatccgccaccacacccagctattttttgtatttttagtaaagacgaggtttcaccatgttggccaggctagtctcaaactactgacctgaggtgatccacccaccttggtctctcaaagtgctggggttacaggcatgagccaccatgcccggccTatttaagcttattctttaagggtgagtagaaattttttccaggtgaataaaaccttgagatattattccaagcagagaccagtaggtgcaaagacacagggataTAGAGATGTTGAAATTTACCAAACACTGCTAGATTAAAAAAACAAAAAGGAAACTATCAAAATCAAAAATTAAAATTAAAA
i ponAbe2.chr15_random      I 593 C 0
s nomLeu3.chr6               17169060 445 - 121039945 cccaagatggagtgcaatggtgtgatctcagctcactgcaacctctgcttcccagattcaagcaattcttctgcctcaatctcccgagtagctgggattacaggcatccaccaccacgcccagctattttttgtatttttagtaaagacaaggtttcaccatgttggccaggctagtctcaaattactgacctgaggtgatccacccgccttggtctcccaaagtgctgggattacaggcgtgagccaccatgcccggcctatttaagctgattctttaagggtgagtagaaattttttccaggtgaataaaaccttgagatattattccaagcagagacaagtaggggcaaagacacagGAATATAGAGATGTTGAAGTTTACCAAACACTGCTAGatt-aaaaaccaaaaaggaaactatcaaaatcaaaaattaaaattaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108379487 443 - 171882078 cccaagatggagtgcaatggtgtgatctcagctccctgcaacctctgcttctgaggttcaagcgattcttctgcctcagtctactgagtagctgggattacaggcatcagccaccatgcccagctattttttgtatttttagtaaagacgaggtttcaccatgttggccaggctagtctcaaactattgacctca-gtgttgtgcccgccttggcctcccaaagtgctgggattacaggcatgagccaccacgcccagcctatttaaggtgattctttaagggtgagtagaaa-tttttccaggtgaataaaaccttgagatattattccaagcagagaccagtaggtgcaaagacacagggatatagaaaTGTTGAAGTTTACCAGACACTGCTAGATT-AAaaaacaaaaaggaaactttcaaaatcaaaaattaaaattaaaa
i macFas5.chr7              C 0 I 334
s papAnu2.JH685126              60285 441 +    130206 cccaagatggagtgcaatggtgtgatctcagctccctgcaacctctgcctctgaggttcaagcgattcttctgcct--gtctactgagtagctgggattacaggcatcagccaccatgcccagctattttttgtatttttagtaaagacaaggtttcaccatgttggccaggctagtctcaaactattGACCTCA-GTGttgtgcccgccttggcctcccaaagtgctgggattacaggcatgagccaccacgcccagcctatttaagGTGATTCTTTAAGGGTGAGTAGAAA-TTTTTCCAGGTGAATAAAACCTTGAGATATTATTCCAAGCAGAGACCAGTAGGTGCAGAGACACAGGGATATAGAAATGTTGAAGTTTATCAAACACTgctagatt-aaaaaacaaaaaggaaactttcaaaatcaaaaattaaaattaaaa
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I

a score=1365.000000
s hg38.chr15_KI270850v1_alt    213643 1 +    430880 a
s panTro4.chr15              17736707 1 -  99548318 A
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10089485 1 +  10928107 A
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17169505 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108380264 1 - 171882078 A
i macFas5.chr7              I 334 C 0
s papAnu2.JH685126              60726 1 +    130206 a
i papAnu2.JH685126          C 0 I 339
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I

a score=9960.000000
s hg38.chr15_KI270850v1_alt    213644 7 +    430880 tCACCTA
s panTro4.chr15              17736708 7 -  99548318 TCACCTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10089486 7 +  10928107 TCACCTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17169506 7 - 121039945 tCACCTA
i nomLeu3.chr6              C 0 M 102
s macFas5.chr7              108380265 7 - 171882078 TCACCTA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              61066 7 +    130206 tcaccta
i papAnu2.JH685126          I 339 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I

a score=136333.000000
s hg38.chr15_KI270850v1_alt    213651 164 +    430880 TAATACAAGCTATGAATGGGCTTGGCCAGAGGTCAGATCGCAACTGAGTTAACTATGACCGTAGACACTCAGTAATCGATGGAAGTTTTAGGGAAAACACATAACATTCTCAGGTTGTTGGCAGAGTATCTGGAACAATTTACAAATACGGGCATTGAATTCTG
s panTro4.chr15              17736715 164 -  99548318 AAATACAAACTATGAATGGGCTTGGCCAGAGGTCACATCGCAACTGAGTTAACTATGACCGTAGACACTCAGTAATGGATGGAAGTTTTAGGGAAAACACATAACATTCTCAGGTTGTTGGCAGAGTATCTGGAACAATTTACAAATACGAGCATTGAATTCTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10089493 164 +  10928107 AAATAAAAACTATGTGTGGGCCTGGCCACAGGTCACGTCGCAATTGAGTTAACTATGACCATAGACACTCAGTAATGGATGGAAGTTTTAGGGAGAAAACATAACATTCTCAGGTTGTTGGCAGAGTATCTGGAACAATTTACAAATATGGGCATTGAATTCTG
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7              108380272 164 - 171882078 AAATAAAACCTATGAATGGGCTTGACCAGAGGTCACATCGCAATTGAGTTAACTATGACTGTAGACACTCAGTAATAGATGGAAATTTTAGGGAAAAAACATAACATTCTCAGGTTGTTGGCAGATTATCTGGAACAATTTACAAATATAGGCATTGAATTCTG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              61073 164 +    130206 aaataaaaGGTATGAATGGGCTTGACCAGAGGTCACATTGCAATTGAGTTAACTATGACTGTAGACACTCAGTAATAGATGGAAGTTTTAGGGAAAAAACATAACATTCTCAGGTTGTTGGCAGATTATCTGGAACAATTTACAAATATGGGCATTGAATTCTG
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I
e nomLeu3.chr6               17169513 102 - 121039945 M

a score=117194.000000
s hg38.chr15_KI270850v1_alt    213815 96 +    430880 GGAATAATTACACTGTAGTGATATCATTTCCTTCTCTGCGTATGAAGCATGTATGTATTGCACACTGTTCAAGGTGCTGAAAATCAGACTCTTCTC
s panTro4.chr15              17736879 96 -  99548318 GGAATAATTACACTGTAGTGATATCATTTCCTTCTCTGCGTATGAAGCATGTATGTATTGCACACTGTTCAAGGTGCTGAAAATCAGACTCTTCTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10089657 96 +  10928107 GGAATAATTACACTGTAGTGATATCATTTCCTTCTCTGTGTATGAAGCATGTATGTATTGCACACTGTTCAAGGTGCTGAAAATCAGACTCTTCTC
i ponAbe2.chr15_random      C 0 I 11
s nomLeu3.chr6               17169615 96 - 121039945 GGAATAATAACACTGTAGTGATATCATATCCTTCTCTGCGTATGAAGCATGTGTGTATTGCACACTTCTCCAGGTGCTGAAAATCACACTCTTCTG
i nomLeu3.chr6              M 102 I 11
s macFas5.chr7              108380436 93 - 171882078 GGAATAATTACACTGTAGTGAT---ATTTCCTTCTCTGTGTATGAAGCATGTACGTGTTGCACACTTTTCAAGGTGCTGAAAATCAGActcttctc
i macFas5.chr7              C 0 I 11
s papAnu2.JH685126              61237 93 +    130206 GAAATAATTACACTGTAGTgat---atttccttctctgtgtatGAAGCATGTACGTGTTGCACACTTTTCAAGGTGCTGAAAATCAGACTCTTCTC
i papAnu2.JH685126          C 0 I 11
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108545828 4428 - 170124641 I

a score=2008677.000000
s hg38.chr15_KI270850v1_alt    213911 1217 +    430880 GAGCAATCAAGGGAGATGGATGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAACAGAGATATGACTAAGATGGTATCTAAACAAGAAGAAAGGAATTATTCATAATATAT----GGAGTTCTGGGGAAATATTTCTC-AAATGAAGCCggccgggccggatggctcccacttgtaataccggcactttgggaggtggaagtgggaggatccaggaggatctaggagttcaagaccagcctggtcaacagagcaaagccctgcctGTTTCTATATTTGAAAAAA---AATAAGTAAATTTTT-TTAATGAAATGATATTTGAGCACTCTGGAGCACCATACAAATATAGGACAGACTGAAGGAATGTACCTGGC-----TTGAG-----TTAACATTTATTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAGAATTGATAGGCAAGGAGGGCTGTCTACAAAGCACTCCATAG-ATCCACC-ATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTATACTATCTATGCATATGCATGTATTATATACATACATGTGCATGGTTAAATAGAAATATTTCTCCTTGGTGTTA-----ATCCATTTATTGTTATGCAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTACATAATGAAAACTAAAAAATTGGCTAACTTTTCAGCCTTGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTGGTATGTG--GGTggttatgcttggcattattgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtacatccaaacgatgaatactgtgcggttgtaaagaagaatgacaaagacctctgtactcatgtagaagaactcacatatat----tgtgtg---tgttttaagaggaacaaggaatggtatagtatgtatggtatgctactttttgtgttgagagagaagagtagaataagaatatacgtgtgtatttgcaaacataaattctgaaatgatatataagaaaccaattaaaagtgtttggctgtagaaggagaataagactgTGAATGGGATTTGGCCACATACTTTTATAGGTAGTTATATTTAAAAATTTTCTGAACCATGTGTTTGTACACATGACCTTTTTAAAAA
s panTro4.chr15              17736975 1217 -  99548318 GAGCAATCAAGGGAGATGGATGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAACAGAGATATGACTAAGATGGTATCTAAACAAGAAGAAAGGAATTATTCATAATATAT----GGAGTTCTGGGGAAATATTTCTC-AAATGAAGCCggccgggccggatggctcccacttgtaataccggcactttgggaggtggaagtgggaggatccaggaggatctaggagttcaagaccagcctggtcaacagagcaaagccctgcctGTTTCTATATTTGAAAAAA---AATAAGTAAATTATT-TTAATGAAATGATATTTGAGCACTCTGGAGCACCATACAAATATAGGACAGACTGAAGGAATGTATCTGGC-----TTGAG-----TTAACATTTATTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAGAATTGATAGGCAAGGAGGGCTGTCTACAAAGCACTCCATAG-ATCCACC-ATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTATACTATCTATGCATATGCATGTATTATATACATACATATGCATGGTTAAATAGAAATATTTCTCCTTGGTGTTA-----ATCCATTTACTGTTATGCAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTACATAATGAAAACTAAAAAATTGGCTAACTTTTCAGCCTTGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTGGTGTGTG--GGTggttatgcttggcattattgtttgtaatagtatgatagggatggcttcagtgtccaccaacagggaactggttaagtaaactgtggtacatccaaacgatgaatactgtgcggttgtaaagaagaatgacaaagacctctgtactcatgtagaagaactcacatatat----tgtgtg---tgttttaagaggaacaaggaatggtatagtatgtatggtatgctactttttgtgttgagagagaagagtagaataagaatatacgtgtgtatttgcaaagataaattctgaaatgatatataagaaaccaattaaaagtgtttggctgtagaaggagaataagactgtgaatgggatttggccacatacttttataggtagttatatttaaaaattttctgaaccatgtgtttgtacacatgacctttttaaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10089764 1227 +  10928107 GAGCAATCAAGGGAGATAGATGGGTGAGAAACTGATTATCATGTGACAAATGAGGTAATAGAGATATGACTAAGATGCTGTCTAAACAAGAAGAAAGGAATTATTCATAATATAT----GGAGTGCTGGGGAAAGATTTCTCAAAATGAAGCCGgccgggcaggatggctcccacttttaatactggcactttgagaggtggaagtggga-----caggaggatgtaggagttcaagaacagcctggtcaacagagcaaggccctgcctgtctctatatttgaaaaaa---aatagataaattTTT-TAAATGAAGTGATATTTGAGCACTCTGGAGCACCATACAAATATAGGACAGACTGAAGGAATGTATCCAGCTTAATTTGAG-----TTAACATTTTTTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTAGAAACTAGAAAGAATTGATAGGCAAGGAGGGCTGTCTACAAAGCACTCCATAG-ATCCACC-ATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTATACTATCTATGCATATGCATGTATTATATACATACATGTGCATGGTTAGATAGAAATGGTTCTCTTTGGTGTTCTGTTTATCCATTTATTGTTATGAAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTATATAATGAAAACTAAAAAAGGGGCTAACTGTTCAGCCTTGTGACCTTGTGGTGATTCAAGTAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTGGTGtgtgtagatggttatgcttggcattattgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactgattaagtaaactgtggtacatccaaatgatgaatactgtgcagttgtaaagaagaatgagaaagacctctgtactcatgtagaagaactcacatatac--tgtgtgtg---tgtgttaaaaggaacaaggaatggtatagtgtgtatggtatgctactttttgtgttgagagagaagagtagaataagaatatacatgtgtatttgcaaagataaattctgaaaagatatataagaaaccaattaaaagtgtttggctgtggaaggagaataagaCTTTGAATGGGATTTGGCCACATACTTTTATATGTAGTTATATTTAAACATTTTCTGAACTATGTATTTGTACACATGACCCTTTTAAAAA
i ponAbe2.chr15_random      I 11 C 0
s nomLeu3.chr6               17169722 1230 - 121039945 GAGGAATCAAGGGAGACGGGTGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAATAGAGAGATGACTAAGATGCTATCTAAACAAGAAGGAAGGAATTATTCATAATATAT----GGAGTGCTGGGGAAAGATTTCTC-AAATGAAGCCggccgggcgtgagggctcccacttgtaataccggcactttgggaggtggaggtggga-----caggaggatctaggagttcaagaccagcctggctaacagaggaagaccctgcctgtctctatatttgaaaaaa---aaTAGATAAATTTTT-TAAATGAAGTGATATTTGAGCACTCTGGAGCACCATACAAATACAGGCCAGACTGAAGGAATGTATCCAGCTTAATTTGAG-----TTAACAttttttgaaattttatattgcaaaaatagtacatattcactgttttgaaactagaaagaattgataggcaaggagggctttctacaaagcactccatag-atccacc-atactgagacaatgcttgatgctttgatggatttattgtatagtttctatgcatatgcatgtattatatacatacatgtgcatggttaaatagaaatggTTCTCCTTGGTGTTCTGTTTATCCATTTATTTTTATGAAGTAAATTCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTGCATACTGCTGTGTACGTAATGAAAACTAAAAAAGGGGCTAACTATTCAGCCTAGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCGGAAATGAACTTGGTGTGTGTGGGTggttatgcttggcattattgtttgtaataggatgacagggatgacttcagagtccaccaacagggaactggttaagggaacggtggtacatccaaacaatgaatactgtgcagttgtaaagaagaatgagaaagacctctgtactcatgtggaagaactcacatatattgtgtgtgtg---tgttttaaaaggaacaaggaatggtatcgtatgcatggtatgctactttttgtgttgagagagaagagtagaataagaatatacatgtgtatttgcaaagataaattctgaaatgatatatacggaaccaattaaaagtgtttggctgtggaaggagaataagactgTGAATGGGATTTGGCCACATAATTTTATAGGTAGTTATATTTAAAATTTTTCTGAACTATGTATTTGTACACGTGACCCTTTTAAAAA
i nomLeu3.chr6              I 11 C 0
s rheMac3.chr7              108550256 1212 - 170124641 GAGCAGTCAAGGGAGATGGATGGGTGAGCAAT---GTGACATGTGACAAGTGAGGTAATAGAGATATGGCTAAGATGCTATCTAAACAAGAAGAAAGGAATTATTCGTAATATGTGGAGGGAGTGCTAGGGAAAGATTTCTG-AAATGAAGCTggccgggcctgatggctcactcttgtaatactggcactttgggaggtggaagtgggaggacccaggaggatctagaatct-------------gtcga-----------cctgcctgTCTCTATATTTGAAAAGAATCAATAAATAAAATGCT-TAAATGAAGTGATATTTGAGCACTCTAGAGCACCATATAAATATAGGACAGACGAAAAGAATGTATCCTGC-----TCGATTTGAATTAACATTTTTTGAAATTTTATACTTCAAAAATAGTACATATTCACTGTTGTGAAATTAGAAGGAATTGATACACAAGGAGGGTGGTCTACAAAACACTCCATAG-ATCCACC-ATACTGAGACAATGCTTAATGCTTTGATGGATCTATTATATACTTTCTATGCATACACATGTATTATATACATACATGTACGTGGTTAAATAGAAATGTTTCTCCTTGGTGTTCTGTTTATCCATTTATTGTTATGAAGTAAATCCCCAAAGAGTACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTACATAATGAAAACTAAAAAAGGGGCTAAGTTTTCAGCCTTGTGACCTTGTGGTGATTCAAGCAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTGGTGTGTGTGGGTggttatgcttggcattgttgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtacatccaaacgatgaatactgtgcagttataaagaagaatgagaaagacctatgtactcatgtggaagaactcggatatat--tgtgtgtgtgttttttttaaaggaacaaggaatggtatagtatgtattgtacgccactttttatgttgagggagaagagtagaataaagacatgtatgt--atttgcaaagataaattctgaaatgatatataagaaaccaatgaaaagtttttggctatggaaggagagtaagactgTGAATGGGATTTTGCCACATACTTTTATAAATAGCTGTATTTAAAAATTTTCTGAACTATGTATTTGTACATATGACCTTTTTAAAAA
i rheMac3.chr7              I 4428 I 25
s macFas5.chr7              108380540 1209 - 171882078 gagcaatcaagggagatggatgggtgagcaactgattatcatgtgacaagtgaggtaacagagatatgactaagatgctatctaaacaagaagaaaggaattattcgtaatatat----ggagtgctggggaaagatttctC-AAATGAAGCCAgccgagtgtgatggctcccacttgtaatactggcactttaggaggtggaagtgggaggatccaggaggatctaggaggtcaaggccagcctggtcaacagaggaagaccctgcctgtctctctacttgaaaaaa------aaataaaTTTTTAAAAATGAAGTGATATTTGAGCACTCTGGAGCACCATACAAATGTCGGACAGACTGAAGGAATGTATCCGGC-----TTAAT-----TTAACATTTTTTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAG-ATTGATAGGCAAGGAAGGCTGTCTACGAAGCACTCCATAG-ATCCACC-ATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTACGCTTTCTATGCATAAGTATGTATTATATACATACACGTGCATGGTTAAATAGAAATGTTTCTTCTTGGTGTGCTGTTTATCCATTTATTGTTATGAAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTGGCTACATACTGC--TGTATATAGTGAAAACTAAAAAAGGGGCTAACTTTTCAGCCATATGACCTTATGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTGGTGTGTGTGGGTGGTTATGCTTGgca---ttgtttgtaatagtatgatatggatgacttcagtgtccaccaacaggaaactggttaagtaaactgtggtacatccaaacaatgaatactgtgcagttgtaaagaagaatgagaaagacctatgtactcatgcaaaagaacac--atatat--tgtgtgtg---tttttaaaaaggaacaaagaatggtatagtatgtattgtatgctactgtttgtgttgctagaaaagagtaaaataagaatataaatgtgcatttgcaaagataaattctgaaatgacatataagaaaccaatTAAAAG----TGGCTGTGGAAGGAGAATAAGACTGTGAATGGGATTTTGCCACATACTTTTATAGATA----TATTT-AAAATTTTCTGAACTATGTATTTGTACACATGACCCTTTTAAAAA
i macFas5.chr7              I 11 C 0
s papAnu2.JH685126              61341 1219 +    130206 GAGCAATCAAGGGAGATGGATGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAACAGAGATATGACTAAGATGCTATCTAAACAAGAAGAAAGGAATTATTCGTAATATAT----GGAGTGCTGGGGAAAGATTTCTC-AAATGAAGCCAGCCGAGTGTGATGGCTCCCACTTGTAATACTGGCACTTTAGGAGGTGAAAGTGGGAGGATCCAGGAGGATCTAGGAGGTCAAGCCCAGCCTGttcaacagagaaagaccctgcctgtctctctacttgaaaaaaataa--aaataaaattttttaaatgaagtgatATTTGAGCACTCTGGAGCACCATACAAATATCGGACAGACTGAAGGAATGTATCCGgc-----ttaat-----ttaacattttttgaaattttatattgcaaaaatagtacatatTCACTGTTTTGAAACTAGAAAG-ATTGATAGGCAAGGAAGGCTGTCTACGAAGCACTCCATAGAATCCACCAATACGGAGACAATGCTTAATGCTTTGATGGATTTATTGTACACTTTCTATGCATaagtatgtattatatacatacacgTGCATGGTTAAATAGAAATGTTTCTCCTTGGTGTgctgtttatccatttattgttATGAAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTGGCTACATACTGC--TGTATATAGTGAAAACTAAAAAAGGGGCTAACTTTTCAGCCATATGACCTTATGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTGGTGTGTGTGGGTGGTTATGCTTGGCA---TTGTTTGTAATAGTATAATACGGATGACTTCAGTGTCCACCAACAGGAAACTGGTTaagtaaactgtggtacatccaaacAATGAATACTGTGCAGTtgtaaagaagaatgagaaagaccTACGTACTCATGCAAAAGAACAC--atatat--tgtgtgtg---tttttaaaaaggaacaaagaatggTATAGTATGTATTGTATGCTACTGTTTGTGTTGCTAGAAAAGagtagaataagaatataaatgtgCATTTGCAAACATAAATTCTGAAATGACATATAAGAAACCAATTAAAAGTGTTTGGCTGTGGAAGAAGAATAAGACTGTGAATGGGATTTTGCCACATACttttatagata----tattt-aaaattttctgaactATGTATTTGTACACAtgacccttttaaaaa
i papAnu2.JH685126          I 11 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218  217 -  24206276 I

a score=150379.000000
s hg38.chr15_KI270850v1_alt    215128 119 +    430880 TAAGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGATAAGAACAAATGATCTAAGGGGCTGCCCATCTTTTTAGTACCCAGTGAATATTAATATATAACAATAGCAGCAAAAATT
s panTro4.chr15              17738192 119 -  99548318 ttaGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGATAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTAGTACCCAGCGAATATTAATATATAACAATAGCAGCAAAAATT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10090991 119 +  10928107 TAAGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGAAAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTAGTACCCAGTGAATATTAATACATAACAATAGCAGCAAAAATT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17170952 119 - 121039945 TAAGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGATAAGAACAAATGTTGTAAGGGGCTGCCCATCGTTTTAGTACCCAGTGAATATTAATACATAACAATAGCATTAAAAATT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108381749 126 - 171882078 TAAGTGAATGAAGGAATGAGGAATGAAGTAGGATTATGACAAAGAGATAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTGGTACCCAGTGAATATTAATACATAACAATAGCAGCAAAAATT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              62560 126 +    130206 taagtgaatgaaggaatgaggAATGAAGTAGGATTATGACAAAGAGATAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTGGTACCCAGTGAATATTAATACATAACAATAGCAGCAAAAATT
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108551468  25 - 170124641 I

a score=170364.000000
s hg38.chr15_KI270850v1_alt    215247 105 +    430880 GGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATATTAAACAAAATAATCTGAGAACGATAAAACAATTTGAAATA
s panTro4.chr15              17738311 105 -  99548318 GGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATATTAAACAAAATAATCTGAGAATGATAAAACAATTTGAAATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10091110 104 +  10928107 GGAAGAATAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGCCTTTTCCTCAATTTCATATATTAAACAAAATAATCTGAGAACGATCAAACAATTTGAAAC-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17171071 104 - 121039945 GGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAGTTTCATATATTAAACAAAATAATATGAGAACAATGAAACGATTTGAAAC-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108551493 101 - 170124641 GGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATGT--TAAAAAATAA-CTGAGAACAAGAAAACAATTTGAAAT-
i rheMac3.chr7              I 25 C 0
s macFas5.chr7              108381875 103 - 171882078 GGAAGAGTGGCCCTAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATACAT-AAAAAAAATAACCTGAGAACAATCAAACAATTTGAAAC-
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              62686 103 +    130206 GGAAGAGTAGCCCCAGGAGGGTAGGGAGTCagcctttcctttgtcttttcctcAATTTCATACAT-aaaaaaaaTAACCTGAGAACAATAAAacaatttgaaac-
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=841060.000000
s hg38.chr15_KI270850v1_alt    215352 392 +    430880 AAAAATGTCTCCAGATCTCTTA-----AAAGGAAGCTGGGGCAGCTTTCTGTAGCGCACTTCCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGG----ATACATACAGGagaaaacaaaatcagaaaaagaaaagagatttaaatataaataAATGAAAATAACAATTCTCCCTCATTATAAA--------------------GGAAATCAT-TCTTTTTGTAATAATTTGGATGACAAATATTAAG-AAAAATCTTTAATTTGCCACTCAAAACATTGTGGTTTGTTGCTTTTTATACGTTTTTATGCACATAAACCTTTTAAAAAGTAGAATCGTAGTATGTAGTCTTTTGTCACTTACTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
s panTro4.chr15              17738416 392 -  99548318 AAAAATGTCTCCAGATCTCTTA-----AAAGGAAGCTGGGGCAGCTTTCTGTAGCGCACTTCCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAACCTACATGGG----ATACATACAGGAGAAAACAAAATCAGAAAAAGAAAAGAGATTTAAATATAAATAAATGAAAATAACAATTCTCCCTCATTATAAA--------------------GGAAATCAT-TCTTTTTGTAATAATTTGGATGACAAGTATTAAG-AAAAATCTTTAATTTGCCACTCAAAACACGGTGGTTTGTTGCTTTTTATACGTTTTTATGCACATAAACCTTTTAAAAAGTAGAATCGTAATATGTAGTCTTTTGTCACTTACTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10091214 392 +  10928107 AAAAATGTCTCCAGATCTCTTA-----AAAGGAAGGTGGGGCAGCTTTCTGTAGCGCACTTCCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGG----ATATATACAGGAGAAAA-AAAATCAGAAAAAGAAAAGAGATTTAAATATAAAAAAATGAAAATAAGAATTCTCCCTGATTATAAA--------------------GGAAATCAT-TCTTTTTGTAATAATTTGGATGACAAATATTAAGAAAAAATCTTTAATTTGCCACTCAAAACATTCTGGTTTGTTGCTTTTTATACATTTTTATGCATATAAATCTTTTAAAAAGTAGAATCATAATATGTAGTCTTTTGTCACTTACTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17171175 391 - 121039945 AAAAATGTGTCCAGATCTCTTA-----AAAGGAAGTTGGGGCAGGTTTCTGTAGTGCACTTCCCAAAAACAGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGG----ATACATACAGGAGGAAA-AAAATCAGAAAAAGAAAAAAGATTTAAATATAAATAAATGAAAATAACAATTCTCCCTGATTATAAA--------------------GGAAATCAT-TCTTTTTGTAATAATTTGGGTGACAAATATTAAG-AAAAATCTTTAATTTGCCACTCAAAGCATTCTGGTTTGTTGCTTTTTAGATGTTTTTATGCATATAAACCTTTTAAAAAGTAGAATTGTAATATATAGTCTTTTGTCACTTACTATATTTTGGGCACATTTCTGTGGCAGTAAATATATCCTGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108551594 411 - 170124641 AAAAATGTCTCCAGATCTCTTAAAAT-AAAAGGAAGATGAACAGCTGTATGTAGTGCACTTCCCAGAAATGGGCTGGATTCCCTCAAGAGGCAGGAGTTCTAGCCTACTTGGGATACATACATACAGGAGGA---AAAATAAGAAAAAGAAAAGAGATTTAAATATAAATAAATGAAAATAACACTTCTCCCTGATTATAAAGGAAATCATATTCTTTTCATGGAAATCAT-TCTTTTTGTAATAATTTGGATGACAAATATTAGG-AAAAATCTTTAATTTGTCACTCAAAGCATTCTGGTTTGTTGCTTTTTATATGTTTTTATGCATATAAACCTTTTAAAAAGTAGAATCATAATA------CTTTTGTCACGTAGTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108381978 393 - 171882078 AAAAATGTCTCCAGATCTCTTAAAGT-AAAGGAGGATGGGGCAGCTTTATGTAGTGCACTTCCCAACAATGGGCTGATTTACCTCAAGAGGCAGGGATTCCAGCCTACATGGG----ATACATACAGGAGAA---AAAATAAGAAAAAGAAAAGAGATTTAAATACAAATACATGCAAATAACAAttctccctgattataaa--------------------ggaaatcat-tctttttgtaataatttgcatgacaaatattagg-aaaaatctttaatttgtcactcagagcattctggtttgttgctttttatatgtttttatgcatataaaccttttaaaaagtagaatcataatatatagtcttttgtcacttagtatattttgagtatatttctgtggcagtaaatatatcctggca
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              62789 393 +    130206 aaaaatgtctccagatctCTTAAAGT-AAAGGAGGATGGGGCAGCTTTATGTAGTGCACTTCCCAACAATGGGCTGATTTACCTCAAGAGGCAGGGATTCCAGCCTACATGGG----ATACATAcaggagaa---aaaataagaaaaagaaaagagatttaaatacaaatacatgcaaataACAATTCTCCCTGATTATAAA--------------------GGAAATCAT-TCTTTTTGTAATAATTTGGATGACAAATATTAGG-AAAAATCTTTAATTTGTCACTCAAAGCATTCTGGTTTGttgctttttatatgtttttatgcatataaaccttttaaaaagtagaatcgTAATATATAGTCTTTTGTCACTTAGTATATTTTGAGTATATTTCTGTGGCAGTAAATATATCCTGGAA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10             113854865 388 - 132174527 AAAAATGTGTCCAGATCTGTTGAAACACAAGGAAGATGGGGCAGCTTCATGTAGGGCACTTGCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGG----ATACATACAGGAGAAA--AAAATAAGAAAAAG-----AGATTTAAATATAAATAAATGAAAATAAC--TTCTTTCTGATTACAAA--------------------GGAAATCACATCTCTTTGTAATACTTTGGATGACAAATATTAGG-AAAAAGCTTTAATTCTGCACTCAAaacattctggtttgttgctttttatacttttttatgcatataaacatttt-aaaagttgaatcataatatacagtcttttgtcatttactatattttgtgcatatttctgtggcagtaaatacatcccggca
i calJac3.chr10             n 83844 I 2596
e chlSab2.chr29              21074218 217 -  24206276 I

a score=94490.000000
s hg38.chr15_KI270850v1_alt    215744 55 +    430880 TCATCATTTTTAATAGCTGGATGTATATTAAGTTAATCACTGCCACCCCAGAGGt
s panTro4.chr15              17738808 55 -  99548318 TCATCATTTTTAATAGCTGGATGTATATTAAATTAATCACTGCCACCCCAGAggt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10091606 55 +  10928107 TCATCATTTTTAATAGCTGGATGTATATTAAGTTAATCGCTGCCGCCCCAGAGGt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17171566 55 - 121039945 TCATCATTTTTAATAGCTGGATGTATATTAAGTTAATCACTACCACCCCAGAggt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108552005 53 - 170124641 TCATCATTTTTAATAGCTGGATGTATATT--GTTAATCATTGTGACGCCAGAGGt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108382371 55 - 171882078 tcatcatttttaatagctgggtgtatattAAGTTAACCATTGCCACCCCAGAGGT
i macFas5.chr7              C 0 I 305
s papAnu2.JH685126              63182 55 +    130206 TCATCATTTTTAATAGCTGGGTGTATATTAAGTTAACCATTGCCACCCCAgaggt
i papAnu2.JH685126          C 0 I 309
e calJac3.chr10             113855253 2596 - 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=709071.000000
s hg38.chr15_KI270850v1_alt    215799 416 +    430880 gaattttcttatacacacattttaatgggctcgagcaaacatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaatcattctccaggaaaagtgactcag-gttatactcccaccaacaaggacagagctccaggt---tcccctttccatttgtcatctttcctgcctttatacagaaaatctcattgttttcatgacatttctttgatttcttgtgcttttgaatc-tttgtatatgcc-attggccatttttattcttgtgagaagtgccagtttctccattgcccattttcggttgaaaatcatttg-tttttttttctcagtaattttaaagatttctttatagtctaaggatacaagccttttatctgtcattgag
s panTro4.chr15              17738863 415 -  99548318 gaattttcttatacatacattttaatgggcttgagcaaacatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaatcattctccaggaaaagtgactccg-gttatactcccaccaacaaggacagagctccaggt---tcccctttccatttgtcatctttcctgcctttatacagaaaatctcattgttttcatgacatttctttgatttcttgtgcttttgaatc-tttgtatatgcc-attggccatttttattcttgtgagaagtgccagtttctccattgcccattttcggttgaaaatcatttg--ttttttttctcagtaattttaaagatttctttatagactaaggatgcaagccttttatctgtcattgag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10091661 411 +  10928107 gaattttcttatacatacattgtaatgggctcgagcaaacatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaatgattctccgggaaaagtgactccg-gttatactcccaccaataaggacagagctccaggt---tcccctttccatttgtcatctttcctgcctttatacagaaaatctcattgttttcatcacattgctttgatttcttgtgcttttgaatc-tttttatatgcc-attggccatttttattcttgtgagaagtgcccgtttctccattgcccattttcagttgaaaatca------ttttttttctcagtaattttaaagatttctttatagactaaggatacaggccttttatctgtcattgac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17171621 416 - 121039945 gaattttcttatacatacattttaatgggctcaagcaaacatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaattattctccaggaaaagtgactcag-gttttactcccaccaacaaggacagagctccaggt---tcccctttccatttgtcatctttgctgcctttatacagaaaatctcattgttttcatgacattgctttgatttcttgtgcttttgaatc-tttttatatgcc-attggccatttttattcttgtgagaagtgccagtttctccaatgcccattttcggttgaaaatcatttg-tttttttttctaagtaattttaaagatttctttataggctaaggatacaaaCCTTTTATCTGTCATTGAG
i nomLeu3.chr6              C 0 n 0
s rheMac3.chr7              108552058 419 - 170124641 gaattttcttctatacacgttttaatggactcaagcaagcatttttggactaaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttccaattatcctccaggaagagtgactcag-gttatactcccaccaacaaggacaaagctccaggt---tcccccttccatttgtcatctttgttgcctttatacagaaaatctcattgttttcatcacatttctttgatttctagtgcttttgaatcttttctatatgcctattggccatttttattcttgagagaagtgcctgtttctcccttgccaattgtctgttgaaaatcacttgttttttttttctgagtaattttaaaaatttctttacagactgaggatacaaaccttttatctgtcattgag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108382731 417 - 171882078 gaattttcttatatatacattttaatggactcgagcaagcatttttggactgaattcacagaagtagaatttctggaggaaaataatttttagggtttttcattgaaattttcaaattatcctccaggaaaagtgacccag-gttatactcccactaacaaggaaagagctccaggt---tcccccttccatttatcatctttcctgcctttatacagaaaatctcaccgttttcatgacaattttttgatttctagtgcttttgaatc-tttctatatgcc-attggccatttttattcttgtgagaagcgccagtttctccattgcccattattagttgaaattcatttgtttttcttttcttaataattttaaagatttctttatagactgaggatacaaaccttttatctgtcattgag
i macFas5.chr7              I 305 C 0
s papAnu2.JH685126              63546 421 +    130206 gaattttcttatatatacattttaatggaTTCGAGCAAGCATTTTTGGACTGAATTCacagaagtagaatttctggaggaaaataatttttagggtttttcattgaaattttcaaattatcctCCAGGAAAAGTGACCCAGTGTTATACTCCCACTAACAAGGACAGAGCTCCAGGTTCCTCCCCCTTCCATTTATCATCTTTCCTGCCTTTATACAGAAAATCTCACTGTTTTCATGACAATTTTTTGATTTCTAGTGCTTTTGAATC-TTTCTATATGCC-ATTGGCCATTTTTATTCTTGTGAGAAGTGTCAGTTTCTCCATTGCCCATTATTAGttgaaattcatttgtttttcttttcttaataattttaaagatttcattaTAAACTAAGGATACAAACCTTTTATCTGTCATTGAG
i papAnu2.JH685126          I 309 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=76877.000000
s hg38.chr15_KI270850v1_alt    216215 45 +    430880 gtgac-aaaactttctcccagtaagt-aatttgtcatttcatttttt
s panTro4.chr15              17739278 46 -  99548318 gttacaaaaactttctcccagtaagt-aatttgtcatttcatttttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10092072 46 +  10928107 gttacaaaaactttctcccagtaagt-aatttgtcatttcatttttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102170418 46 + 121039945 gttaaaaaaactttctcccagtaagt-aatttgtcacttcatttttt
i nomLeu3.chr6              I 4008 C 0
s rheMac3.chr7              108552477 47 - 170124641 gttacaaaaactttctcccagtaagtgggtttgtcatttcacttttt
i rheMac3.chr7              C 0 I 317
s macFas5.chr7              108383148 46 - 171882078 gttacaaaaactttctcccattaagt-aatttgtcatttcatttttt
i macFas5.chr7              C 0 I 4
s papAnu2.JH685126              63967 46 +    130206 Gttacaaaaactttctcccattaagt-aatttgtcatttcatttttt
i papAnu2.JH685126          C 0 I 4
e calJac3.chr10             113855253 2596 - 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I

a score=193126.000000
s hg38.chr15_KI270850v1_alt    216260 249 +    430880 C--------------ttcttttctttttcctttc--------------ctttccc--tttctttcttttccttgtttctttct---ttcttcttcttccttccttg-ctttccttttctttcttgctttccattcttactttct---------------------------------------------------------tttcttttccctccctccctccct---------------ctct-----ttctttcctctttctttttc-------------------------tttctctctttt----tctttc---ttctttccctctctctctttcttcctttcctttctttctctttat--------------------tccctccctccctccttcttccc--------ttttt
s panTro4.chr15              17739324 257 -  99548318 c--------------ttctttttcctttcctttccctt-tctttctttctttctctttttctttcttttccttgtttctttctttcttcttcttcttccttccttg-ctttccttttctttcttgctttccgttcttactttct---------------------------------------------------------tttcttttccctccctccctctct---------------------------ttttctctttttctttc---------------------------tctctctttt----tctttc---ttctttccctctctctctttcttcctttcctttctttctctttgt--------------------tccctcctttcctccttctttcc---------tttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10092118 304 +  10928107 cttccttcttttcttttctttttcctttcctttcctttccctttctttctttctt--tttctttcttttgcttgtttctttct---ttcttcttcttccttccttc-ctttctttttctttcttgctttccgttcttactttct---------------------------------------------------------tttctttcccctccctccctctct--ttccctttctttcttct-----ttctttcctctttctttttctct-----------ttttctttctttctctctctttt----tctttc--tttctttccctctctctctttcctcctttcctttctttctctttgt--------------------tcccaccctccttctttccttcc---------tttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102170464 307 + 121039945 Cttccttcttttcttttctttttcctttcctttcctttcccttt----ctttctt--tttctttcttttccttgtttctttctttcttcttcttctaccttccttcactttcattttctttcttggtttccgttcttactttct---------------------------------------------------------tttcttttccctccctccctctctctttctctttctttcttct-----ttctttcctctttcattttc---------------------tctttttctttctttc----tctctctttttctttccgtctctctctttcttcctttcttttctctttctttgt--------------------tccctccctccctccttccttcctttcttccttttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108383198 311 - 171882078 --------------ctttatttcccttccctttc--------------ctttcct--ctcctttcttttccttctttctttct---------ttctgcattcttt--ctttctccttcttccttccttgccattcttactttgc---------------------------------------------------------tttttcctccctttttccctctttctctcccttccttcctttt-----tttctttctttctttctttctctttctttctttctttcctattctttcctctctctt----tctttc--tttctctctctctctctctttcatcctttcctttctttctctttctttgttccctctctccctccctccctcccttcctccttccttccttcctcccttctt
i macFas5.chr7              I 4 I 15
s papAnu2.JH685126              64017 373 +    130206 --------------ctttatttcccttccctttc--------------ctttcct--ctcctttcttttccttctttctttct---------ttctgcattcttt--ctttctccttcttccttccttgccattcttactttgctttttcctccctttttccctctttctctcccttccttccttccttccttcctttctttctttctttcttctttctctctctctctttctttctttcttttttctctttctttctttctttctttctttctttctctttctttccttttctttcctctgtctttctctctttc--tttctttccctctctctctttcatcctttcctttctttctctttcttggttccctct----ctccctccctcccttcctccttccttccttcctcccttctt
i papAnu2.JH685126          I 4 I 15
e calJac3.chr10             113855253 2596 - 132174527 I
e chlSab2.chr29              21074218 217 -  24206276 I
e rheMac3.chr7              108552524 317 - 170124641 I

a score=20115.000000
s hg38.chr15_KI270850v1_alt    216509 11 +    430880 tttctttcttt
s panTro4.chr15              17739581 11 -  99548318 tttctttcttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10092422 11 +  10928107 tttctttcttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102170771 11 + 121039945 ttactttcttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108383524 11 - 171882078 tttctttcttt
i macFas5.chr7              I 15 C 0
s papAnu2.JH685126              64405 11 +    130206 tttctttcttt
i papAnu2.JH685126          I 15 C 0
s chlSab2.chr29              21074435 11 -  24206276 tttctttcttt
i chlSab2.chr29             I 217 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e rheMac3.chr7              108552524 317 - 170124641 I

a score=1042779.000000
s hg38.chr15_KI270850v1_alt    216520 451 +    430880 ctttcACTAGCCAAGCTCCAAAGTCACATTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTTCGTGATTTTAGTGTAAACAGGAGCAGGAGAAAATGTAATTATCTAAgtctcgctgtgtcacccagactggagtgcagtgccataatcatagctactgcagccttgaactcctcgcctcaagcaattttcccacctcagcctgccaagtagctaggactacagctgtgtgccaccacacccagctaatgttcaaaaatttt-tgtggagatgtgaattctttatgctgcccaggctagtcttgaactcctgacttcaagtaatcctcccacctcggcttgccaaagtgctgggattacaggtgtcagctactgctcctgacTGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGTTTT
s panTro4.chr15              17739592 451 -  99548318 ctttcACTAGCCAAGCTCCAAAGTCACATTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTTCGTGATTTTAGTGTAAACAGGAGCAGGAGAAAATGTAATTATCTAAgtctcgctctgtcacccagactggagtgcagtgccataatcatagctactgcagccttgaactcctcgcctcaagcaattttcccacctcaacctgccaagtagctaggactacagctgtgtgccaccacacccagctaatgtttaaaaatttt-tgtggagatgtgaattctctatgctgcccaggctagtcttgaactcctgacttcaagtaatcctcccacctcggcttgccaaagtgctgggattacaggtgtcagctactgctcctgaccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGTTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10092433 451 +  10928107 ctttcACTAGCCAAGCTCCAAAGTCACATTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTCTAACTTAGTGATTTTAGTGTAAACAGGAGCAGAAGAAAATGTAATTATCTAAgtctcgctctgtcacccaggctggagtgcagtgccataatcatagctactgcagcctccaactcctggcctcaagcaattttcccacctcagcctgccaagtagctaggactacagctgtgtgccaccacacccagctaatttttaaaaatttt-tgtggagatgtgaactggctgtgctgcccaggctagtcttgaattcctgacttcaagtaatcctcccaccttggcttgccacagtgctgggattacaggcgtgagctcctgctcctggccGAGAGTTTAGTTTTGTTTGCCAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102170782 450 + 121039945 ccttcACTAGCCAAGCTCCAAAGTAACATTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTTAGTGATTTTAGTGTAAACAGGAGCAGGAGAAAATGTAATTATCTAAgtcttgctctgtcacccaggctggagtgtagtgccataatcatagctactgcagccttgaattcctggcctcaagcaattttcccacctcagcctgccaagtagctaggactacagctg-gtgccaccacacccagctaatttttaaaaatgtt-tgtggagatgtgaattcgctctgctgcccaggctagtcttgaactcttgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattacaggcgtgagctactgctcctggccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTCTCATATTTGAGGCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108552841 445 - 170124641 ctttcACTAGCCAAGCTCCAGAGTCACATTTCACTTAATTTTTAT-CTGCCAAATTTGAAAACATTTTAACTTAGTGATTTTAGTGTAAACAGGAGCAGGAGAGAATG----TATTTAAgtctctctctgccactcaggctggagtgtggtgccataatcatagctactgcagcctcgaactcctgggctcaagcaattttcccacctcagcct-ccaagtagctaggactacaggtgtgtgccaccatgcccagctaatttttaaaattttt-tgtggagatgtgaattcgctatgctgcccaggctagtcttgaactcctgacttcaagtaattctcctaccttggcttgccaaagtgctggcattacagctatgaactactgctcctggcTGAGGGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTT
i rheMac3.chr7              I 317 I 1
s macFas5.chr7              108383535 450 - 171882078 ctttcACTAGCCAAGCTCCAAAGTCACTTTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTGAGGGATTTCAGTGTAAACAGGAGCAGGAGAAAATGTAATTATCTAAgtttcactctgtcacccaggctggagtgcagtgccataatcatagctactgcagcctcgaactcctgcgctcaagcaattttcccacctcagcctgcaaagtagctaggactacagctgtgtgccaccaggcccagctaatttttaaaattttt-tgtggagacgtgaatttgctatgctgcccaggttaatcttgaactcctgacttcaagtaatcctcccaccttagtttgccaaagtgctgggattacaggcatgaactactgctcctagtcGAGAGTTTAGTTTTGATTGCTAGTGGCGTTCTTGGTATC-TTTCATATTTGAGGCTTT
i macFas5.chr7              C 0 I 1
s papAnu2.JH685126              64416 452 +    130206 ctttcactagcCAAGCTCCAAAGTcacttttcacttaatttttatccTGTCAAATTTGAAAGCCTTTTAACTGAGGGATTTCAGTGTAAACAGGAGCAGGAGAAAATATAATGATCtaagtttcattctgtcacccaggctggagtgcagtgccataatCATagctactgcagcctcgaactcctgcgctcaagcaattttcccacctcagcctgcaaagtagctaggactacagctgtgtgccaccaggcccagctaatttttaaaatttttctgtggaGACGTGAattcgctatgctgcccaggttaatcttgaactcctgacttcaagtaatcctcccaccttagtttgccaaagtgctgggattacaggcatgaactactgctCCTAGTCGAGAGTTTAGTTTTGATTGCTAGTGGCGTTCTTGGTATCTTTTCATATTTGAGGCTTT
i papAnu2.JH685126          C 0 I 262
s chlSab2.chr29              21074446 450 -  24206276 ctttcACTAGCCAAGCTCCAAAGTCACTTTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTGAGTGATTTCAGTGTAAACAGGAGCAGGAGAAAATGTAATTATCTAAgtttcgctctgtcacccaggctggagtgcagtgccataatcatagctactgcagcctcgaactcctgcactcaagcaattttcccacctcagcctgcaaagtagctaggactacagctgtgtgccaccacgcccagctaa-ttttaaaattttt-tgtggagacgtgaattcgctatgctgcccaggttaatcttgaactcctgacttcaagtaatcctcccaccttagtttgccaaagtgctgggattacaggcatgaactactactccTAGTTGAGAGTTTAGTTTTGATTGCTAGTGGCGTTCTTGGTATCTTTTCATATTTGAGGCTTT
i chlSab2.chr29             C 0 I 1
e calJac3.chr10             113855253 2596 - 132174527 I

a score=2440507.000000
s hg38.chr15_KI270850v1_alt    216971 1086 +    430880 GGGCTAGTGCTGAAGTATTACACTCACCATTCGAGGTCTACAGGACTTTTGGTTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAGAATGTGCCTACCAGGAATCTGCTTTATATCCATTGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCGAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTACTTTGG----AAGTATAAAGGTG-AAAAAAATTC-AAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCGTGAGTCTTACATTGTGAAGATACTTTTTTAAAACTTGAGATGTAAGAGGATGTAAACGGTTTTGTAGGAGATCAGGCTGGATGAGAATGGACACTTGTAAACATACTTTTTAGACTAAATCTCTGATTGCCGCTTGTTTTTCTTATGGAACTCATACAAATAAAACACATTGGATGGAGGGTGCGAGTAGGAAGGAGATTCTGGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATATGGTAA-CCCTGGCTTTGGACCTACAGAAGGAAACACA-TTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacttggagggattactgcagcacagattgctgaaccctactccagagtttctgattcaccaggtccagggtggggcctgagaatttgcacttataaaaaggtctcaggtgctgctggtgctgctagtccatagactacatt-ttgagaaccactCTTGTCTATTAAGTGTAAATTGTAGAACTCTAGAAAAAAGCTTAGTTCAGTCTGGGATAAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAGTACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCCTAGAGAGGCCTGGTGAT
s panTro4.chr15              17740043 1084 -  99548318 GGGCTAGTGCTGAAGTATTACACTCACCACCCGAGGTCTACAGGACTTTTGGTTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAGAATGTGCCTACCAGGAATCTGCTTTATATCCATTGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCTTGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTACTTTGG----AAGTATGAAGGTG-AAAAAAATTC-AAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCTTGAGTCTTACATTGTGAAGATACTTTTTTAAAACTTGAGATGTAAGAGGATGTAAATGGTTTTGTAGGAGATGAGGCTGGATGAGAACGGACACTTGTAAACATACTTTTTAGACTAAATCTCCGATTGCCGCTTGTTTTTCTTATGGAACTCATACAAATAAAACACATTGGATGGAGGGTGCGAGTAGGAAGGAGATTCTTGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATATGGTAA-CCCTGGCTTTGGACGTACAGAAGGAAACACA-TTTTACTACCTGCTGTATGCCAGAGGTTCTTGAAcacttggagggattactgcagcacagattgctgaaccctactccaggg-ttctgattcaccaggtccagggtggggcctgagagtttgcacttataaaaaggtctcaggtgctgctggtgctgctagtccatagactacatt-ttgagaaccactCTTGTCTATTAAGTGTAAATTGTAGAACTCTAGAAAAAAGCTTAGTTCGGTCTGGGATAAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAGTACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGG-CTGGTGAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10092884 1085 +  10928107 GGGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTCTACAGGACTTTTGGTTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAGAATGTGCCTACTAGGAATCTGCTTTATATCCATTGAAAGCA---AGAAATAATACAGTAAAACTCTGCCTGGCTATAGGCTTTGAAAGAATGGCATATTCTGGTTTAATTCTATTAACTTGG----AAGTATGAAGGTG-AAAAAAATTC-AAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAACGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATCTACTTGGTGTTTTGTTATAGAACTGCTAGTGTGCCTGAGTCTTACATTGTGAAGATGCTTTTTTAAAACTTGAGATGTAAGAGGATGTAAATGGTTTTGTAGGAGATCAGGCTGGATGAGAACGGACACTTGTAAACATACTTTTTACACTAAATCTCTGATTGCCACTTG-TTTTCTTATTGAACTCATAAAAATAAAACACATTGGATGGAGGGTGTGAGTAGGAAGGAGATTCATGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATACGGTAA-CCCTGGCTTTGGACCTACAGAAGGAAACACA-TTTTACTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggattactgcagcacacattgctgaaccctagtccagagtttctcattcaccaggtccagggtgaggcctgagaatttgcacttataaaaaggtctcaggtgctgctggtgctgctagtccatagactacatt-tagagaaccactCTTGTCTATTAACTGTAAATTGTAGAACTCTAGAAAAAAGCTTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCAGGTGAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102171232 1086 + 121039945 GGGCCAGTGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGGGTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAGAATGTGCCTACCAGGAACCTGCTTTATATCCATTGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCATATTCTGATTTAATTCTATTAACTTGG----AAGTATGAAGGTGAAAAAAAATTC-AAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAACGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATTTACTTGGTGTTTTATTATAGAACTGCTAGTAAGCCTGAGTCTTACATTGTGAAGATACTTTTTTAAAACTTGAGATGTAAGAGGATGTAAATGGTTTTGTAGGAGATCAGGCTGGATGAGAACGGACACTTGTAAACATACTTTTTAGACTAAATCTCTGATTGCCACTTG-TTTTCTTATTGAACTCATAAAAATAAAACACATCAGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATATGGTAA-CCCTGGCTTTGGACCTACAGAAGGAAACACA-TTTTACTACCTGCTGTATGCCAAAGGTTCTTGAAcacctgcagggattactgcagcacagattgctgaaccctaatctagagtttctgattcaccaggtccagggtgggacctgagaattcgtacttataaaaaggtctcaggtgctgctggtgctgctagtccatagactacatt-ttgaggaccactCTTGTCTATTAACTGTAAATTGTAGAACTCTAGAAAAAAGCTTAGTTTGGTCTGGGATAGGAAGCACACAGGTTATGAAGAAAATCATGAAAGATTCAACCCTTGATGCCAGCCTAGTGTGGATTTCAGATAATAAGCAGTACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATCAAGTGAGAAATTCCATTTCATTTGCAAGGCTTAGAGAGGCCAGGTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108553287 1081 - 170124641 GTGCTAGTGTTGAAGTATTTCACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAAAATTGAACAGATGGAACTGTTTAGTTCTGCATCTTCGCAGGTACACAAAATGTGCCTACTGGGAATCTGCTTCATATCCAAATAAATAATACAGAAATAATACACCAAAACTTTGCCT-------GGCTTTGAAAGAATGGTGTATTCTGGTTTAATTCTATGAACTTGGTGAAAAAAATGAAGGTG-AAAAAAATTTCAAAACTTAAACTTCCTGTTGAATGCAATTTGAAAATATTGCCAGTGATTCCACTTTTCTTCTCTAGTAAGTTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCCTGAGACTTACATTGTGAAGACACTTTTTAAAAACTTGAGATGTAAGAGGCTGTAAATGGTTTTGTATGAGATCAGGTTGGATGAGAACTGATAATTGTAAATATACATTTTAGACTTAATCTCTGCTTGTCACTTG-TTTTCTTACTGAACTCATAAAAATAAAACACACTGGATGGAGGGT--GAGTAGGAAGGAGATTTATGGGTTTTAATTGCATGTCATTGTTTCATATCAAGACAGAACATATGGTAT-CCCTGGCTTTGGATCTAAAGAAGGAAACACA-TTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggattactgcag-acagattgctgagccctacgccagagtttctgattcaccaggtccagggtgggacctgagaatttgtactttt---aaggtctcaggtgctactagtgctgctagtccagagactacattactgagaaccactCTTGTCTATTAACTGTAAATCATAGAACTCTAGAAAAAAGCTTAGTTTGGTGTGGGATGAGAAGCACACGGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTATTATGGAATTCAGGTAACAAGCAATACACAGTGACATAACACAGTTCTTAGTTTTCATGGTTGCAAGTCACAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCAGGTGAG
i rheMac3.chr7              I 1 C 0
s macFas5.chr7              108383986 1072 - 171882078 GGGCTAATGCTGAAGTATTGCACTCACCATCTGAGGTTTACAGGACTTTTGTTTCAATGTTGAACAGGTGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAATCTGCTTTATATCCATGGAAAGCA---AGAAATAATATGGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTAAATTGG----AAGTATGAAGGTG-AAA--------AAAACTCAAATTTCCTGTTGAATGCAATTTGGAAATATAACCAGTGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCCAATCTACTTGGTGTTTTATGATAGAACTGCTAGTGTGCCTGAGTCTCACATTGTGAAGATACATTTTTCAAACTTGAGGTGTAAGAGGACGTAAATGGTTTTGTATGAGATCAGGCTGGATGAGAACTGACACTTGTAAATATATATTTTAGACTAAATCTCTGATTGCCACTTG-TTTTCTAATTGAACTCATAAAAATAAAACACGTTGGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTGTATAACAAGGCAGAACATATGGTAT-CCCTGGC-TTGGACCTACAGAAGGAAACATA-TTTTTCTGCCTGCCGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagactgctgagccctactccagagtttccgattcaccaggcccagggtgggacctgagaatgtgcacttataaaaagatctcaggtgctgctggtgctgttagtccatagactacatt-ttgaaaaccactCTTGTCTATTAACTGTAAACTGTAGAATTCTAGAAAAAAACTTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTAACAAGCAGTACACAGTGACATAA-----TTCTCGGTTTTCATGATTGCAAATCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGTCAGGTGAT
i macFas5.chr7              I 1 n 1
s papAnu2.JH685126              65130 1072 +    130206 GGGCTAAAGCTAAAGTATTGCGCTCACCATCCGAGGTTTACAGGACTTTTGTTTCAATGTTGAACAGATGGAACTGTTTAGTCCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAATCTGCTTTATATCCatggaaagca---agaaataatacaGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTAAATTGG----AAGTATGAAGGTG-aaa--------aaaaCTCAAATTTCCTGTTGAATGCAATTTGGAAATATAGCCAGTGATTCCACTTTTCTTCTCTAGGAAGGTTGGACATTCTAATCTACTTGGTGTTTTATGATAGAACTGCTAGTGTGTCTGAGTCTCACATTGTGAGGATACATTTTTCAAACTTGAGGTGTAAGAGGACGTAAATGGTTTTGTATGAGATCAGGCTAGATGAGAACTGAcacttgtaaatatatattttagactaAATCTCTGATTGCTACTTG-TTTTCTAATtgaactcataaaaataaaacacgttggatggagggtgggagtagGAAGgagatttatgtcttttaattgcaTGTCATTGTTGTATAACAAGGCAGAACATATGGTATCCCCTGGC-TGGGACCTACAGaaggaaacatattttttctgCCTGCCGTATGCCAGAGGTTCTTGAACACCTGTAGGGACTACTGCAGCACAGACTGCTGAGCCCTACTCCAGAGTTTCCGATTCCCCAGGCCCACGGTGGGACCTGAGAATTTGCACTTATAAAAAGATCTCAGGTGCTGCTGGTGCTGTTAGTCCATAGACTACATT-TTGAAAACCACTCTTGTCTATTAACTGTAAACTGTAGAATTCTAGAAAAAA-CTTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGG-ATTCAGGTAACAAGCAGTACACAGTGACATAA-----TTCTCGGTTTTCATGATTGCAAATCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGTCAGGTGAT
i papAnu2.JH685126          I 262 C 0
s chlSab2.chr29              21074897 1061 -  24206276 GGGCTAATGCTGAAGTATTGCACTCACCATCCGAGGTTTACAGGACTTTTGTTTCAATGCTGAACAGATGGAACTGTTTAGTCCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAATCTGCTTTATATCCATGGAAAGCA---AGAAATAATACAGTAAAAC--TGCCTGGCTAGAGGCTTTGAAAGAATGGTGTATTCTGGTTTAATTCTATTAAATTGG----CAGTATGAAGGTG-AAA--------AAAACTCAAATTTCTTGTTGAATGCAATTTGGAAATATAGCCAGTGATTCCACTCTTCTTCTCTAGTAAGGTTGGACATTCCAATCTACTTGTTGTTTTATGATAGAACTGCTAGTGTGCCTGAGTCTCACATTGTGAAGATACATTTTTCAAACTTGAGGTGTAAGAGTACGTAAATGGTTTTGTATGAGATCAGGCTGGATGAGAACTGACACTTGTAAATATATATTTTAGACTAAATCTCTGATTGCCACTTG-TTTTCTAATTGAACTCATAAAAATAAAACACGTTGGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTGTATAACAAGGCAGAACACATGGTAT-CCCTGGC-TTGGACCTACAGAAGGAAACATA-TTTTTCTGCCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagacttctgagccctactccagagtttccgattcaccaggtccagggtgggacctgagaatttgcacttatgaaaagatctcaggtgctgctggtgctgttagtccatagactacatt-ttgaaaaccactC--GTCTATTAACTGTAAATTGTAGAATTCTAGAAAAAAACGTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTAACAAG-------CAGTGACATAA-----TTCTTGGTTTTCATGATTGCAAATCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGTCAGGTGAT
i chlSab2.chr29             I 1 n 1
e calJac3.chr10             113855253 2596 - 132174527 I

a score=154091.000000
s hg38.chr15_KI270850v1_alt    218057 115 +    430880 TCTAGAAAAATGGGCCTTGTATTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGTAAGTTTTGTGTTCCTACTTATT------TTGTAtcttattttgttttattttattt
s panTro4.chr15              17741127 115 -  99548318 TCTAGAAAAATGGGCCTTGTATTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGGAAGTTTTGTGTTCCTACTTATT------TTGtatcttattttattttattttattt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10093969 111 +  10928107 TCTAGAAAAATGGGCCTTGTATTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGAAAGCTTTGTGTTCTTACTTAtt------ttgtattttattttattgtatttc----
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102172318  97 + 121039945 TCTAGAAAAATGGGCCTTGTGTTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGAAAGCTTTGTGTTCTTAC----T------TTGTAttttatttc--------------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108554368 116 - 170124641 TCTAGAAAAATGGGCCTTGTGTTCATTTTAAATTGGTAAAGAGCTTTAAGTGCTCATTAAGTTGAAAGCTTTCTGTTCTTACTttttattttattttattttattttattttattt-----
i rheMac3.chr7              C 0 I 315
s macFas5.chr7               65321243 110 + 171882078 TCTAGAATACTGGGACTTGTATTTCTCTTAAACAAGTAGAGAGTTTTAAGTGCTTATTAAATTGAAAGCTTTGTGTTCTTACTTAtt------ttgtgttttattttattttattt-----
i macFas5.chr7              I 77144 C 0
s papAnu2.JH685126              66202 104 +    130206 -CTAGAATACTGGGACTTGTATTTCTCTTAAACAAGTAGAGAGTTTTAAGTGCTTATTAAATTGAAAGCTTTGTGTTCttacttatt------ttgtgttttattttattt----------
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I

a score=369410.000000
s hg38.chr15_KI270850v1_alt    218172 294 +    430880 c-ttttgagatggagtcttgctctgtcacccaggctggagtgcagtggcatgagcttggctcactgcaacctccatctcctgggttcaagtgattctcctgcctc-agcctcccaaatagctgggattacaagcacccaccaccacacctggttggtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcgaactcctgacctcaggtcatccacccacctcggcctcccaaagtgatggcattacaggggtgagccaccgcacctggccCAAAAGC
s panTro4.chr15              17741242 295 -  99548318 tattttgagatggagtcttgctgtgtcgcccaggctggactgcagtggcatgagcttggctcactgcaacctccatctcctgggttcaagtgattctcctgcctc-agcctcccaaatagctgggattacaggcacccaccaccacacctggctagtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcgaattcctgacctcaggcaatccacccacctcggcctcccaaagtgatggcattacaggcgtgagccaccgcacccggccCAAAAGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10094080 293 +  10928107 --ttttgagatggagtcttgctctgtcacccaggctggagtgcagtggcataagcttggctcactgcaacctctgtctcctgggttcaagtgattcttctgcctc-agcctcccaaatagctaggattacaggcacccaccaccacgcctggctagtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcgaactcctgacctcaggcgatccacccaccttggcctcccaaagtgatggcattacatgtgtgagccactgcacccggccCAAAAGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102172415 294 + 121039945 --ttttgagatggagtcttgctctgccacccaggctggagtgcagtggtgtgagcttggctcactgcaacctctgtctcctgggttcaagtgattctcctgcctcaagcctcccaaatagctgggattacaggcacccaccaccacgcctggctagcttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcaaactcctgacctcaggcaatccgcccacctcggccttccaaagtgatggcattacaggcgtgagccactccacccggccCAAAAGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65321353 294 + 171882078 -cttttgagatggagtcttgctctgttgcccaggctgaagtgcaggggcgtgagcttggctcactgcaacctccgtctcctgggttcaggtaattctcctgcctc-agccgaccaaatagctgggattacaggcacccaccaccacgcctggctagtttttgtatttttagtacagacagggtttcatcatgttggccatgttggtcttgaactcctgacctcaggcgatccacccacctcggcctcccaaagtgatggcattacaggtgtgaaccaccgcacctggccCAAAAGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              66306 294 +    130206 -cttttgagatggagtcttgttctgttgcccaggctgaagtgcaggggcgtgagcttggctcactgcaaccactgtctcctgggttcaggtaattctcctgcctc-agccgaccaaatagctgggattacaggcacccaccaccaggcctggctagtttttgtatttttagtacagacagggtttcatcatgttggccatgttggtcttgaactcctgacctcaggcgatccacccacctcggcctcccaaagtgatggcattacaggcgtgaaccaccgcacctggccaaaaagc
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e rheMac3.chr7              108554484 315 - 170124641 I

a score=308662.000000
s hg38.chr15_KI270850v1_alt    218466 212 +    430880 TTTGTGTTTTTAAAGATATTAGACATGTTTCTTGTTTTTAA--------AAGAAATCTTAACAATAATGTAGGAGAATAAGACAAACATTTTTCCAAAAAAGAGAAATTGTTGTGATTATTCTCTGTTATTGGAATGTCGGATACTATAGTCAGCTTCATTAATCATCAAGAATGCTATGGATTTTCCATTTTTATAGGGTCTATATCTCAGTTAAGGTA
s panTro4.chr15              17741537 212 -  99548318 TTTGTGTTTTTAAAGATATTAGACATGTTTCTTGTTTTTAA--------AAGAAATCTTAACAATAATGTACGAGAATAAGACAAACATTTTTCCAAAAAAGAGAAATCCTTGTGATTATTTTCTGTTATTGGAATGTCGGATACTATAGTCGGCTTCATTAATCATCAAGAATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10094373 212 +  10928107 TTTGTGTTTTTAAAGATATTAGACATGTTTCTTGTTTTTAA--------AACAAATCTTAACAATAATGTATGAGAATAAGACAAACATTTTTCCAAAAAAGAGAAATCATTGTGATTATTTTGTCTTATTGGAATGTTGGATACTATAGTCAGCTTCATTAATCATCAAGCATGCTATGTATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102172709 200 + 121039945 TTTGTGTTTTTAAAGATACAAGAAA--------GTTTTTAA--------AAGAAATCTTAACAATAATGTAGGGGAATAAGACAAACATCTTTCCAAAAAAGAGAAATCATTGTGCTTATTTTGTCTTATTGTGATGTTGGATACTATATTCGGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGCATC----TCCCAGTTAAGGTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108554799 208 - 170124641 TTTGTGTTTTTAAAGATATTAGACATGTTTCTTATTTTTTA---------AAAAATCTT---AATAATGTAGGAGAATAAGAGAAACGTTTTTTCAAAAAAGAGAAATCATTGTGATTATTTTATCTTATTAGAATGTTGGATATTATCGTCTGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGGTCGGTATCTCAGTTAAGGTA
i rheMac3.chr7              I 315 C 0
s macFas5.chr7               65321647 209 + 171882078 TTTGTGTTTTTAAAGATATTAGACATGTTTATCATTAAAAA--------GAAAAATCTT---CATAATGTAGGAGAATAAGAGAAATGTTCTTCCAAAAAAGAGAGATCATTGTGATTATTTTGTCTTATTGGAATGTTGGATACTATAGTCTACTTCCTTAATCATCAAGCATGCTATGAATTTTCCATTTTTATAGGACCTGTATCTCAGTTAAGGTG
i macFas5.chr7              C 0 I 276
s papAnu2.JH685126              66600 214 +    130206 tttgtgtttttaaagatattagacatgcttatcattaaaaaaaaaaaaaaaaaaaactt---cgtaatgt---agaataagagaaaagttcttccaaaaaagagaaatcattgtGATTATTTTGTCTTATTGGAATGTTGGATACTAGAGTCTACTTCCTTAATCATCAAGCATGCtatgaattttccatttttataggaCCTGTATCTCAGTTAAGGTG
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I

a score=122777.000000
s hg38.chr15_KI270850v1_alt    218678 69 +    430880 ATACTTGTAATTCTTGTGCTCCATTTGAAGATGAAAAATATAGGCCAAAATCATAGACTTTGCATAGAA
s panTro4.chr15              17741749 69 -  99548318 ATATTGGTAATTCTTGTGCTCCATTTGAAGATGAAAAATACAGGCCAAAATCATAGACTTTGCATAGAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10094585 69 +  10928107 ATACTGGTAATTCTTGTGCTCCATTTGAAGATGAAAAATATAGGCCAAAATCATAGACTTTGCATAGAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102172909 69 + 121039945 ATACTGGTAATTCTTGTGCTCCATTTGAAGATGAAAAATATAGGCCAAAATCACAGATTTTGCATAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108555007 69 - 170124641 ATACTGGTAATTGTTGTATTCCATTTGAAGATGAAAAATATAGGCCAAAATCATAGACCTTGCATAGAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65322132 69 + 171882078 ATACTGGTAATTCTTATACTCCATTTGAAGATGAAAAATATAGTCCAAAATCATAGACTTTGCATAGAA
i macFas5.chr7              I 276 C 0
s papAnu2.JH685126              66814 69 +    130206 ATACTGGTAATTCTTGTACTCCATTTGAGGATGAAAAATATAGTCCAAAATCATAAACTTTGCATAGAA
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I

a score=94156.000000
s hg38.chr15_KI270850v1_alt    218747 57 +    430880 GCTGCATAATGAAGACAGCTCTGGAGGAACACATAGATACACAC------AGACACACATATA
s panTro4.chr15              17741818 57 -  99548318 GCTGGATAATGAAGACAGCTCTGGAGGAACACATAGATACACAA------AGACACACATATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10094654 56 +  10928107 GCTGGATAA-GAAG------CTGGAGGAacacatagatacacacacacagacacacatatata
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102172978 55 + 121039945 GCTGGATAATGAAGACCGCTCTGGAGGAacacatacacacacac--------acacaTATATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108555076 63 - 170124641 GCTGGATAATGAAGACAGCTCTGGAAGAACACATAGATACACACACACAGACACACATATGTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65322201 63 + 171882078 GCTGGATAATGAAGACAGCTCTGGAGGAACGCATAGATacacacacacagacacacaTATATA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              66883 57 +    130206 GCTGGATAATGAAGACAGCTCTGGAGGAAcgcatagatacacacacacagacacac------a
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10             113857849 49 - 132174527 ACTGGATAATGAAGACAGCTTTTAAGACACACACAGATACACAG--------------ATATA
i calJac3.chr10             I 2596 n 2596
e chlSab2.chr29              21075958  1 -  24206276 I

a score=113469.000000
s hg38.chr15_KI270850v1_alt    218804 74 +    430880 TAAAGTATATACACATATATTTTTTAAAGTTTATTTTTAACAGTTTTAAAGCTTTTAAAGCAAAAGCCAGCCCC
s panTro4.chr15              17741875 74 -  99548318 TAAAGTATGCACACATATATTTTTTAAAGTTTATTTTTTACAGTTTTAAAGCTTTTAAAGCAAAAGCCAGCCCC
i panTro4.chr15             C 0 I 1111
s ponAbe2.chr15_random       10094710 74 +  10928107 taaagcatacacacatatatTTTTTAAAGTTTTTTTTTTACAGTTTTAAAGCTTTTAAAGCAAAAGCCAGCCCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102173033 70 + 121039945 TAAAGTATACACAC----CTTTCTTAAAGTTTACTTTTTACAGTTTAAAAGCTTTTAAAGTAAAAGCCAGCCCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108555139 74 - 170124641 TAAAGTGTACCCACATATATTTTTTAAAGTTTATTTTTTACAGTTTTAAAGTTCTTAAAGCAAAAGCCAGCCCG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65322264 74 + 171882078 TAAAGTATACACATGTATACATTTTTAAGTTTATTTTTTACAGTTTTAAAGCTTTTAAAGCTAAAGCCAGACCC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              66940 74 +    130206 taaagtatacacatgtacacatttttaagtttattttttacagttttaaagcttttaaagcaAAAGCCAGACCC
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I

a score=25678.000000
s hg38.chr15_KI270850v1_alt    218878 20 +    430880 TCCCCTCTCCCAGAGTGGGC
s panTro4.chr15              17743060 20 -  99548318 TCCCCTCTCCCAGAGTGGGC
i panTro4.chr15             I 1111 C 0
s ponAbe2.chr15_random       10094784 20 +  10928107 TCCCCTCTCCCAGAGTGGGC
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              108555213 20 - 170124641 TCCCCTCTCCCAGAGTGGGT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65322338 20 + 171882078 TTGCCTCTCCCAGAGTGGGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              67014 20 +    130206 TTGCCTCTCCCAGAGTGGGC
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e nomLeu3.chr6              102173103  0 + 121039945 C

a score=885577.000000
s hg38.chr15_KI270850v1_alt    218898 475 +    430880 GGCCTCTCCCCTCTCTCTGAGTGG-GCGGGGACAGCGGTTGCATGGGCAGCTTT--CCTTATGATGCTACAGGTCCCTCTGGACATGCTGC-GCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAACATTAAGGCCACGCCCCTATTCTGCGTTCCATTGGTGCCCTGGTTACGCCACCTGTGGCTCAGTTGCACAGCTGCCTGGTAGGTGACTGGAGGCATTGAGCAGTGCTCACTGGTATTTCGCTGATGTGGCCCCAACCCCGCCT--CCCTCCCCACCCCGCGATGTCAGAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACACACCAGGTCATGGC-CCCCAACCCAGCCACAGATCCCCTCCGATGACAAGACCGGTGCCAGAGTCCATACCACTCCTGAGGCATACCAGATGGGGCCCCCCAACCCCAGCCCCTCTGG-
s panTro4.chr15              17743080 476 -  99548318 GGCCCCTCCCCTTTCTCTGAGTGG-GCGGGGACAGCGGTTGCCTGGGCAGCTTT--CCTTATGATGCCACAGGTCCCTCTGGACATGCTGCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCTGCGTTCCATTGGTGCCCTGGTTACGCCACCTGTGGCTCAGTTGCACAGCTGCCTGGTAGGTGACTGGAGGCATTGAGCAGCACTCACTGGTATTTCGCTGATGTGGCCCCAACCCCGCCT--CCCTCCCCACCCCGCGATGTCAGAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACACACCAGGTCATGGC-CCCCAACCCAGCCACAGATCCCCTCCGATGACAAGACTGGTGCCAGAGTCCATACCACTCCTGAGGCATACCAGATGGGGCCCCCCAACCCCAGCCCCTCTGG-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10094804 476 +  10928107 GGCCCCTCCCCTCTTTCAGAGTGG-GAGAGGACAGCGGTTGCACGGGCAGCTTT--CCTTATGATGCCACGGGTCCCTCTGGACATGCTGCTGCTTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTGTTTTGCATTCTAGTGGGGCCCTGGTTACGCCTCTTCTGGCTCAGTCGCACAGCTGCCTGGTAGGTGACTGGAGGCATTCAGCAGTGCTCACTGGGATTTCGCTGATGTGGCCCCAAGCCCGCCT--CCCTCCCCACCCTGCGATGTCAGAAAAAACACAACAGGGCAAATTGGCCGCAGCCAAGAAAAAGGTAAAATACACCAGGTCATGGC-CCCCAACCCAGCCACAGATCCCCTCTGATGACAAGACTGGTGCCAGAGTCCATACCACTCCTGAGGCATATCAGACTGGGCCCCCCAACTCCAGTGCCTCTGG-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102173103 468 + 121039945 --------TCCCCTCTCTGAGTGG-GCTGGGACAGCGGTTGCATGGGCTGCTTT--CCTTATGATGCCACAGGTCCCTCTGGACATGCTGCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTGTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCTGTGTTCTAGTGGGGCCCTGGTTACACCTCCTGTGGCTCAGTCACACAGCTGCCTGGTAGGTGACTGGAGGCATTCAGCAGTGCTCACTGGGACTTCACTGAGGTGGCCCCAACCCTGCCT--CCCTCTGCACCCTGCGATGTCAGAAAAAACACAACAGAGGAGAGTGGCCGCAGCCAAGAAAAAGGTGAAATGCCCCAGGTCATGGC-CCCCAACCCAGCCACAGACGCCCTCTGATGACAAGACTGGTGCCAGAGTCCATACCAGTCCTGAGGCATACCAGACTGGGCCCCCCAACCCCAGCGCCTCTGG-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108555233 477 - 170124641 GGCCCTGCCCCTCTCTCCGAGTGG-GTGGGGACAGTGGTTGCATGGGCAACTTTAGCATTGTGATGCCACAGGTCCCTCTGGACACACTGCTGCTTGACCATGCCTCCTTTCCCTCTCATCTTTCTCACTGACCAATGGGCTTGGAACATTAAGGCCACGCCCCTATTCTGCATTCTCCTGGGGCCCTGGTTACACCT-CTCTGGCTCAGTCGCATAGCTGCCAGGTAGGTAACTGGAGGCATTCAGCAGTGCTCACTGGGATTTTGCTGATGCGGCCCCAACCCCGCCT--CCCTCCCCACCCTGCGATGTCAGAAAAAACACGACAGGACAAATTGGCTGCAGCCAAGAAAAAGGTAAAGCGCACCAGGTCATGGC-CCCCAACCCAACCACAGATCCCCTCCGACAACAAGACCGTTGCCAGAGTCCATACCACTCCTGAGGCACACCAGACTGTGCCCCCCAACCCCTGCGCCTCTGG-
i rheMac3.chr7              C 0 I 254
s macFas5.chr7               65322358 468 + 171882078 GGCCCCTCCCCTCCTTCTGAGTAG---------AGCGGTTGAATGGGCAGCTTT--CCTTGTGATGCCACAGGTCCCTCTGGACACCCTGCTGCCTGGCCACGCTTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTCTTCTGAGTTCTAGTGGGGCCCTGGTTACGCCTCCTCTGGCTCAGTTGCACAGCGGCCTGGTAGGTGACTGGAGGCATTCAGCCGTGCTCACTGGGATTTCGCTGATGTGACCCCAACCCCGCCT--CCCTCCGCACCCCATGATGTCAGAAAAAACACGACAGGGAAAATTCACCACAGCCAAGAAAAAGGTAAAATGCACCAGGTCATAGC-CCCCAACCCAACCACAGATCCTCTCCGATGACAAGACCATTGCCAGAGCCCATACTATTCCTCAGGCATACTGGAATGGGACCCCCAACACCAGCGACTCTGG-
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              67034 473 +    130206 GGCCCCTCCCCTCCTTCTGAGTGGAGTGGGGAGAGCGGTTGAATGGGCAGCTTT--CCTTGTGATGCCACAGGTCCCTCTGGACACCCTGCCGCCTGGCCAcgcttcctttctctttca----tctcACTGACCAATGGGCTTGCAGCATTAAGGCCACGCCCCTCTTCTGAGTTCTAGTGGCGCCCTGGTTACGCCTCCTCTGGCTCAGTTGCACAGCGGCCTGGTAGGTGACTGGAAGCATTCAGCCGTGCTCACTGGGATTTCGCTGATGTGACCCCAACCCCGCCT--CCCTCCGCACCCCATGATGTCAGAAAAAACACGACAGGGAAAATTCACCACAGCCAAGAAAAAGGTAAAACGTACCAGGTCATAGC-CCCCAACCCAACCACAGATCCTCTCCGATGACAAGACCATTGCCAGAGCCCATACTATTCCTCAGGCATACCGGAATGGGACCCCCAACACCAGTGACTCTGG-
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55234593 460 +  61074082 GGTCCCGCCCCCGCCCCGAAGTGG-GCGGGGCCAGAGGCTGCGCGCGCAGCTTT--CATTGTCACTCCACCTGCTC----------GCGGCAACCTGACCACGCCCATTCCCCCGTTCATCTTTCTCACCAGCCAATAGAATTGGAGCATTGAGGCCACGCCCACCAGCTGCTACCTAGAAACTCTAGGGTCCCTCCCTTTCTGGCTCAGTCGCACACCGGCGCGGTGACTGCCGGAAGTGATGCCGCGGTGGTTGCCGGGATCGCGGTGATGTGGCC---ACCCCCCTTACCCCTCCCCGTCCCGGGATGTCGGAAGAAACCCGACAGAGCAAATTGGCTGCGGCCAAGAAAAAGGTAAAACGTGCCGGGTCGCGGCTCCCTGACCCAGCCAAAGG-CCCCTCGGACGGCCGGGCCGTGGCCAGAATCTTTGCTGCCCCTGAGGCACACGGGGCTA-GCCCCGTGACGCC-----CCTTGGC
i canFam3.chr9              N 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I

a score=391248.000000
s hg38.chr15_KI270850v1_alt    219373 216 +    430880 GCT--CCCCCAACCAAAGCCTAGTCAGTCAGCCCCACCCCTTCAGCAAGCAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTCCCTGCTCCATAATCAGCCCTCACCTCCTGCCACCCCAAGCCCAACCTCCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTCCCCCAGCCCCAGGCCCTG
s panTro4.chr15              17743556 216 -  99548318 GCT--CCCCCAACCAAAGCCTAGTCAGTCAGCCCCACGCCTTCAGCAAGCAGCCCAGTCCTTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTCCCTGCTCCATAATCAGCCCTCACCTCCTGCCACCCCAAGCCCAACCTCCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTCCCCCAGCCCCAGGCCCTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10095280 203 +  10928107 GCT--CCCCCGACCAAAGTCT----TGTCAGCCCCACCCCTTCAGCAAGCAGCCCAGTCCCTGCCCTTGCCAGTC---ACCCCAGGGTGACTTTGGGTGGGT---------GGCTCCCTGCTCCATACTCGGCCCTCACCTCCTGCTGCCCCAAGCCCAACCTCCCTGGGCTCTTTGGACTTGTGTCTCCCAGGACCTGGGTCCCCGAGCCCCAGGCCACA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102173571 216 + 121039945 GCT--CCCCTGACCAAAGTCTTGTCAGCCAGCCCCACCCCTTCAGCAAGGAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGATTCCTGGGGCTCCCTGCTCCATACTCGGCCCTCACCTCCTATTGCCCCAAGCCCAACCTCCCTGGGCTCTCTGGGCTTGCGTCTCCCAGGACCTGGGTCCTCCAGCCCCAAGCCCCG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108555964 216 - 170124641 GCT--CCCCCAACCAAAGTGTTGTCAGTCAGCCCCACACCTTCAGCAAGCAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAGCATGTCTTTGGGTGGGTGACTCCTGGGGCTTCCCGCTCCATACTCAGCCCTAACCTCCTGCCGCCCCAAGCCCGACCTCCCTGGGCTCTTTGGGCTTGTGTCTCCCAAGACCTGGGCCCCCCAGCCCAAGGCCCCA
i rheMac3.chr7              I 254 C 0
s macFas5.chr7               65322826 219 + 171882078 GCT--CCCCCCACCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCAAGCAGCCCAATCCCTGCCCTTGCCGATCTTTACCCCAGGGTGACTTTGGGCGGGTGACTCCTGGGGCTCCCCACTCCATACTTGGCCCTCACCTCCTGCTGCCCCAAGCCTGACCTTCCTGGGCTCTTCGGGCTTGCGTCTCCCAGGACCTGGGTACTCCATCCCCAGGCCCCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              67507 220 +    130206 GCTc-ccccccACCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCAAGCAGCCCAATCCCTGCCCTTGCCGATCTTTACCCCAGGGTGACTTTGGGCGGGTGACACCGGGGGCACCCCGCTCCATACTCGGCCCTCACCTCCTGCTGCCCCGAGCCTGACCTTCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGtaccccagccccaggccccc
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55235053 175 +  61074082 ---GCCCCCCACCCCAAGTCGTCTCAGCCAGTcccgcccc-----ccggctgcccagcccccgccctcgcccgcc---gcccccg-gTGACTTTGGGCTGGTGACTCCCCGGGCTCCCTGCTCCAGGTTTGGCCCTAGCCTTCTGCCACCCAGAAGCGG--------------------------------AGGACCTGGGCTCTCCAGGCC--GGTCCCG
i canFam3.chr9              C 0 T 120
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I

a score=157077.000000
s hg38.chr15_KI270850v1_alt    219589 82 +    430880 C-CCTCACCAGTCATCCCTGGGTGGCTTTGGGCTGGTGACTCCCGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTG
s panTro4.chr15              17743772 82 -  99548318 C-CCTCACCAGTCATCCCTAGGTGGCTTTGGGCTGGTGACTCCCGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10095483 82 +  10928107 T-CCTCACCAGTCATCCCTGGGTTACTTTGGGCTGGTGACTCCTGGGGCTCCCTATTGCAGACTCTGCCCTCCCCTCCTGCTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102173787 69 + 121039945 C-CCTTGCCAGTCATCCCTGGGTGACTTTGGGCTGGTGACTCCTGGGGCTCCCTACTGCAAACTCTGCC-------------G
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108556180 83 - 170124641 CTCTTCACCAGTCGTCCCTGGGTGACTTTGGGCTGGTGACTTCTGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65323045 82 + 171882078 C-CGTTGCCAGTCGTCCTTGGGTGACTTTAGGCTGGTGATTCCCGGGGCTCCCTACTGCGGACTCTGCCCTCCCCTCCTGCTG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              67727 82 +    130206 c-cGTTGCCAGTCATCCTTGGGTGACTTTTGGCTGGTGATTCCTGGGGTTCCCTACTGCTgactctgccctcccctcctgctg
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55235108 81 +  61074082 c-cctcgcccgccgccccc-ggTGACTTTGGGCTGGTGACTCCCCGGGCTCCCTGCTCCAGGTTTGGCCCTAGCCTTCTGCCA
i canFam3.chr9              T 120 I 39
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I

a score=63886.000000
s hg38.chr15_KI270850v1_alt    219671 36 +    430880 CCCCAAGCTCGACCTCCCTAGGCTTCTTGGGCTGGC
s panTro4.chr15              17743854 36 -  99548318 CCCCAAGCTCGACCTCCCTAGGCTTCTTGGGCTGGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10095565 36 +  10928107 CCCCAAGCTTGACCTCCCTGGGCTTCTTGGGCTGGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102173856 36 + 121039945 CCCCAAGCTCGACCTCCCTGGGCTTCTTGGGCTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108556263 36 - 170124641 CCCCAAGCTTGACCTCCCTGGGCTTCTTGGGCTGGT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65323127 36 + 171882078 CCCCAAGCTCCACCTCCCTGGGCTCCTTGGGCTGGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              67809 36 +    130206 ccccaagctccacctccctgggctcctTCGGCTGGT
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55235189 39 +  61074082 I
e chlSab2.chr29              21075958  1 -  24206276 I

a score=1956537.000000
s hg38.chr15_KI270850v1_alt    219707 1006 +    430880 GTCTCTGAGGACCTGGGTCGAAACCGTGTGTTTCCCTCCCCCATCGTGGAGCAGCGACTCGGGCATCGCGCTGATGTGGTCCCCTCCCCTGGGAGGAGTGGAATGCAATGATGTCACAGCGCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCAGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGAGACTATGGGACCTAGGAGCAACAGGTTTCAGGCTGCCTTACT----------CCCTTAACATAGAC--ATTGACAGTGGGAAAAGCCTACACTTCCCCTGTGAGCTCAAAATGTTCACAGTATCTCTGGGTGGCAAT-GGGAGAATGGG-----TTTGGTTTGGTTTTTTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TATCGTCTCAACCTggggtactttgagtgccacaggataaatgcgggacatctttctgaagcatcattttcccttgaTTCTCTTGAGAAAATG-----------CATTAATGTACTTGGGGATGACAGACACATAGGTTTCCA--AGCGTATACCAGACTTTGCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGATAAATTCCCAGATTTAATAGAAAAG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTACGCTTCTTCACGCTAGCAGACCTGTGAGGATGTATGACTCTAAA-CCACACGGCCTACAGTTCCTGCCTGCTTAATGTGTGCTTTTCTACCTCTGCCCCTGGTTTTGGTCCCTGGAAGCTGCTGA-TTCATGGCAAAACCCCAGAGCGTGGAGTCAGAGGACT---GAGTTTAAGTTCCAGTATTGCC
s panTro4.chr15              17743890 1006 -  99548318 GTCTCTGAGGACCTGGGACGAAACCGTGTGTGTCCCTCCCCCATCGTGGAGCAGCGACTCTGGCTTCGCGCTGATGTGGTCCCCTCCCCTGGGAGGAGTGGAATGCAATGATGTCACAGTGCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGATCGTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGAGACTATGGGACCTAGGAGCAAGAGGTTTCAGGCTGCCTTACT----------CCCTTCACATAGAC--ATTGACAGTGGGAAAAGCCTACACTTCCCCTGTGAGCTCAAAATGTTCACAGTATCTCTGGGTGGCAAT-GGAAGAATGGG-----TTTGGTTTGGTTTTTTCCCAGGCTTCTACTTTCCAGAGAGATTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TATCGTCTCAACCTGGGGTACTTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTTGAGAAAATG-----------CATTAATGTACTTAGGGATGACAGACACATAGGTTTCCA--AGTGTATACCAGACTTCGCTCTGAAATGAGGCTTGGGTTGTCATCTTTCTGATAAATTCCCGGATTTAATAGAAAAG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCGCTTCTTCACGCTAGCAGACCTGTGAGGATGTGTGACTCTAAA-CCACACGGCCTACAGTTCCTGCCTGCTTCATGTTTACTTTTCTACCTCTGCCCCTGGTTTTGGTCCCTCGCAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAGGACT---GAGTTTAAGTTCCAGTATTGCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10095601 1008 +  10928107 GTCTCTGAGGATCTGGGTGAAAACCCTGTGTTTCCCTCCCCCATCATGGAGCGGTGACTCAGGCATCTCGCTGATGTGGTCCCCTCCCCTGAGAGGAGTGGAATGTAGTGATTTCACAGTCCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGGGACTATGGGACCTAGGAGCAAGAGGTTTCAGGCTGCCTTACT----------CCCTTAACAATGTCTAATTGACAGTGGGAAAAGCCTATACTTCCCCTGTGAGCTCAAAACGTTGACAGTATCTCTGGGTGGCAAT-GGGAGAATGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------ACTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTACCCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TGTCATCTCAACCTGGGGTACTTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccctgagtctcttgagaaaaaa-----------cattaATGTACTTAGAGATGACAGACACATAGGTTTCCA--AGTGTATACCAGACTTCTCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGATAAATTCCCAGATTTAACAGAAAAG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCACTTCTCCACACTAACAGATGTGTGAGGATGTGTGACTCTAAA-CCACACTGCCTACAGTCCCTGCCTGCTTAATGTTTACTTTTCTTCCTCTGCCCCTGGTTCTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAGGACT---GAGTTCAAGTTCCAGTATTGTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102173892 1005 + 121039945 GTCTCCGAGGACCTGGGTCAAAACCCTGTGTTTCCCTCCCCCATCGTGGAGCGGTTACTCGGGCATCGCGCTGATGTGGTCCCCTCCCCTGGGAGGAGTGGAATGTAGTGATGTCACAGTCCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGGTCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCATAAATTTCCAGCTGGAAGGGGAGTGGGGACTATGGGGCCTAGGAGCAAGAGGTTTCAGGCTGCCTTACT----------CCCTTCACATAGAC--GTTGACAGTGGGAAAAGCCTCCACTTCCCCTGTGAGCTGAAAACATTGACAGTATCTCTGGGTGGCAAT-GGGAGAATGGG-----TTTGG-TTGGTTTTCTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------GCTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAGGTGAGATTTGCCCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TATCATCTCAACCTGGGGTACCTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTTGAGAAAAAT-----------CATTAACGTACTTAGAGATGACAGACACATAGGTTTCCA--AGCATATACCAGACTTCTCTCAGAAATGAGGCTTGGGTTGCCCTCTTTCTGATAAATTCCCAGATTTAACAGAAAAG--------CTGCCTTCTGCCATGAGGACACGTTGATATGAAAGTATGAGAGGTACTGGTGCACTTCTTCACACTAACAGACGTGTGAGGATGTATGACTCTAAA-CCACATGGCCTACAGTTCCTGCCTGCTTAATGTTTACTTTTCTACCTCTGCCCCTGGTTTTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAGGACT---GAGTTTAAGTTCCAGTATTGCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108556299 1012 - 170124641 GTCTCCAAGGACCTGGGTCCCAACCCTGTGTTTTCCTCCCCCATCCTGGAGTAGCAACTCGGGCATCGCACTGATGTGGTCCCCTCCCCTGGGAGGAGTGGAATCTAGTGATGTCACAGTCCCCCTAGGAACTGTCATTACTGCTGCAAG-ACTGGCCTTTGATCTTATGCCCCAGTCCC-TAAGTGTTCTCACCCCATTTCTGGTTCCTCTGGTCACAGCACAGATTTCCAGCTGGAAGGAGAATGGGGATTATGGGACCTAGGAGCAGTAGGTTTCAGGCTGCCTTACT----------CCCTTAACGTAGAC--ATTGACAGTGGGAAAAGCCTACACTTCCCCCATGAACTCAAAATGTTGACAGTATCTCAGGGCGGCAAT-GGGAGAACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACAT-T-TTTTCTGAGTTCTCCAC--------------------AGTTCTGGGACCAAA--------------CTGCACTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCTGTAGAACAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TATCATCTCAACTTGGGGTACTTTGAGTgccacaggataaatgtgggagatctttctgaagcatctgtttccctcaattctcttaagagagaaaaat-------cattaATGTACTTAGAGATGACAGTCACATAGGTGTCTAAGAGAGTATACCAGACTTCTCTCTGAAATGAGACTTGGATTATCCTCTTTCTGATAAATTCCTGGGTTTAACAAAGAAG--------CTGCCTTCTGCCATGAGGACACATTGATATAAAAGTTTGAGAGGTACTGGTGCACTTCTTTA-ACTACCAGACATGTGAGGATGTATGACTCTAAA-CCACACAGAGTGCGGTTCCTGCCTACTTAATGTTTACTTTTCTACCTCTGCCTCTGGTTTTGGTCCCTGGCAGATGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGACAAATGAGTTTAAGTTCCATTATTGTC
i rheMac3.chr7              C 0 I 48
s macFas5.chr7               65323163 1005 + 171882078 GTCTCCAAGGACCTGGGT-TGATCCCTGTGTTTCCCTCCCCCATCATGGAGTGGTGACTCGGGCATCATGCTGATGTGGTCCCCTCCCCTGGGTGGAATGGAATGTAGTGACGTCACAGTCCCCCTAGGAACTGCCATTGCTGCTACAAG-ACCAGCCGTTGATCTTACAACCCAGTCCCATAAATTTTCTCACCCCATTTCTGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATGGGGACTATGGGACCCAGGAGCAGGAGGTTTCAGGCTGCCTTACT----------CCCTTCACATAGAC--ATTGACAGTGGGAAAAGCCTGCACTTCCCCTGTGTGCTCAAAACCTTGACAGTATCTCTGGGTGGCCAT-GGGAGAACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTGCAGAGAGACTTTAACAT-TCTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------TGGTCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCAGTGGAATAGATCTTGGGAAGCTGAACTAGATAGCT-TGACTCTTCCTCA---TATCATCTCAACCTGGGGTACTTTGAGTGCCACAGGATGAATGTGGGACATCTTTCTGAAGTGTCATTTTCCCTTGATTCTCTTCAGATCAAA-----------CATTAATGTCCTTAGGGATGACAGTCACATAGGTTTCTA--AGCATATACCAGACTTCTCTCTGAAATCAGGCTTGGGTTGTCCTCTTTCTGAAAAATTCCCAGATTTAACAGAAAAG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCACTTCTTCACACTAACGGACATGTGAGGATGTATGACTCTAAA-CCACACGGCATACAGTTCCTGCCTCCTTCATGTTTACTGTTCTAACTCCGCCCCTGGTTTTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGACCTTGGAGTCAGAAGACG---GAGCTTAAGTTCCAGTATTAAC
i macFas5.chr7              C 0 I 6
s papAnu2.JH685126              67845 1004 +    130206 GTCTCCAAGGACCTGGGTCCGAACCCTGTGTTTCCCTCCCCCATCATGGAGTGGTGACTCGGGCATCACGCTGATGTGGTCCCCTCCACTGGGAGGAATGGAATGTAGTGATGTCACAGTCCTCCTAGGAACTGCCATTACTGCTGCAAG-ACCAGCCGTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCCGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATGGGGACTATGGGACCCAGGAACAAGAGGTTTCAGGCCGCCTTACT----------CCCTTCACAGAGGC--ATTGACAGTGGGAAAAGCCTGCACTTCCCCTGTGTGCTCAAAATCTTGACAGTATCTCTGGGTGGCCAT-GGGAGAATGGC-----CTTGGTTTGGTTTTCT-CCAGGCTTCTACTTTGCAGAGGGactttaacat-tcttttctgagTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CCGCCCTTCAGTCAGTGGTCTCTGAAGTCAGATTTGCTCATCTTCAGTGGAATAGATCTTGGGAAGCTGAACTAGATAGCT-TGACTCTTCCTCA---TATCATCTCAACCTGGGGTAC-TTGAGTGCCACGGGATGAATGTGGGACATCTTTCTGAAGCATCAGTTTCCCTTGATTCTCTTCAGATTGAA-----------CATTAATGTCCTTAGGGATGACAGTCACATAGGTTTCTA--AGCATATACAAGACTTCTCTCTGAAATCAGGCTTGGGTTGTCCTCTTTCTGAAAAATTCCCAGATTTAACAGAAaag--------ctgccttctgccatgaggacACATTGATATGAAAGTGTGAGAGGTACTGGTGCACTTCTTCACACTAACGGACATGTGAGGATGTATGACTCCAAG-CCACGCGGCATACGGTTCCTGCCTCCTTCATGTTTACTGTTCTAACTCTGCTCCTGGTTTTGGTTCCTGGCAGCTGCTGa-ttcatggcaaaaccccagagCTTGGAGTCAGAAGAAG---GAGCTTAAGTTCCAGTATTaac
i papAnu2.JH685126          C 0 I 6
s canFam3.chr9               55235228 1018 +  61074082 GTGTCCAGGGACCTCGGTCCCAGCCCTGCTTTCCCCTCCCCCACCGCGGAGCGGCGACTCGGGCGT----------TGGTA---------GGGAGGAGGGGAATGTAGTTACGTCACAATCCCCCTCGGAACTGTCATTAGCGCCAGGAGCCCCGGTGTTTGGTCTTACTACCCAGTCTCCC-AGTGTTTTCATACCCTTTCCGGTTTCTCCGGTCGCGGCGCAAATTTCCAGCTTGAAGGGGACTGGGGACTATGGGACCTAGGTGGGAGAGGTTTCAGGAGCCCTTACTCTAGACTGTACCCCATCCTTAAAC--ATTG------------------ACTACACCAGTGATCATGGAACATTGGTAACACCTT--GGTGACAATGGGGAGAGTGTGTTTTCTTTGGTATGGTTTCCTTTTAGGTTTCTACTGTCCAGAAAGACTTTCACATATTAAATCTGAATTCTCTACCTCACATTTTAATTCCTTATGATTCT-GGACCAGAGTCCCCCCCGCCTCCCCCCCATCAATCAGTGCTCTTTGGAGTGAGATCTGCTTATCCTCTGTGGAACTGATCTCTGGAACCTGAATTTCATAGGTGGGAATCTTCCCCAAATCATCATCTCAACATGGAGTGTTCTGAGGGCCACAGGAT-AATATAGAA-------CTGAAGCATCAATTGTGCTTGATTCTTTTGAGAAAGAAAAATCCTTTTATAGTAATGTAC-TAGGGATGACATTTGTGTAGATTTGTA--AGATTATGATAGACTTCTCTCTGAAATGGTGCTTGGATTGTCCTCTTTCTGTTAGGTTTCCACATTCACTAGGTGTGTGCCTTTACTGCCTTCTGCCATCAGGATACGTTGATATAAAAGTTTGATAAATACCAATGTGCAGCTT-----TAACAGATTTGTAGGAAAG---GACTCTAAAGTCAGATTACT--CAGATGTTATTTTTCCCAC-----CTTTTCCACCTCCACCTCTGGTTTTGCCTTTTGGCACCTGCTGATTTCATGGCATAACCCCAGAACTCAGAGTCAGAAGACT---AAGTTTAAATTCCATTATTGCC
i canFam3.chr9              I 39 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958    1 -  24206276 I

a score=49063.000000
s hg38.chr15_KI270850v1_alt    220713 57 +    430880 ----ttt----tttgatctttctttttttttttttCTATCCATGATATGAATCCCTCTC---AGTCAC
s panTro4.chr15              17744896 55 -  99548318 ----TTT----TTTGATCTTTC--TTTTTTTTTTTCTATCCATGATATCAATCCCTCTC---AGTCAC
i panTro4.chr15             C 0 I 4
s ponAbe2.chr15_random       10096609 52 +  10928107 ----TTT----T----TCTTTCTTTCTTTTTTTTTCTATCCATGATATCAATCCCTCTC----GTCAC
i ponAbe2.chr15_random      C 0 I 4
s nomLeu3.chr6              102174897 44 + 121039945 ----TTT-----------------TCTTTTTTTTCCTATCCATGGTATCAATCCCTCTC---AGTCAC
i nomLeu3.chr6              C 0 I 4
s macFas5.chr7               65324174 51 + 171882078 ----TTT---------TGTTTTTTTG-GTTTTTTTCTAGCCATGATATCAATCCCTCTC---AGTCAC
i macFas5.chr7              I 6 I 16540
s papAnu2.JH685126              68855 52 +    130206 ----ttt---------tgtttctttgcttttttttctagCCATGATATCAATCCCTCTC---AGTCAC
i papAnu2.JH685126          I 6 I 4
s canFam3.chr9               55236246 66 +  61074082 TAAGTTTAAATTCCATTATTGC--CTTTTCTTTTCTTAGTCATGTTATCAGTCTATTTCTGCAGTCAC
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e rheMac3.chr7              108557311 48 - 170124641 I

a score=558266.000000
s hg38.chr15_KI270850v1_alt    220770 280 +    430880 TGATTGTGACAACaccttgtacagttgttggtggcattacatcagatggt--atataagggtattttgtcaaaactgtaaaggaggatgtggctgtaggggctgatcattCTCATGAGTGTTACTGCTCTTCTTT-CCCACAGTT-----------------------------AAAAGCATATTGGCAGAGGAAGAGCCCTGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAGTC---AATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGG
s panTro4.chr15              17744955 280 -  99548318 TGATTGTGACAACACCTTGTACAGTTGTTGGTGGCATTACATCAGATGGT--ATATAAGGGTATTTTGTCAAAACTGTAAAGGAGGATGTGGCCGTAGGGGCTGATCATTCTCATGAGTGTTACTGCTCTTCTTT-CCCACAGTT-----------------------------AAAAGCATATTGGCAGAGGAAGAGCCCTGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCTGACACAGCCATTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGG
i panTro4.chr15             I 4 C 0
s ponAbe2.chr15_random       10096665 281 +  10928107 TGATTGTGACAACACCTTGTACAGTTGTTGGTGGCATTAAATCAGATGGT--GTATAAGAGTATTTTGTCAAAACTGTAAAGGAGGATGTGGCTATAGGGGCTGATTGTTCTCATGAGTGTTACTGCTCTTTTTTCCCCACAGCT-----------------------------AAAAGAATATCAGCAGAGGAAGAGCTCTGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGAGGATGTGAGTCTTGGCTGGCCAGG
i ponAbe2.chr15_random      I 4 C 0
s nomLeu3.chr6              102174945 277 + 121039945 TGATTGTGACAGCACCTTGTACAGTTGCTGGTGGCATTAAATCAGATGGT--GTATAAGAGTATTTTGTCAAAACTGTAAAGGAGGATGTGGCTATAGGGGCCGATAGTTCTCATGAGTGTTACTGCTCTTTTTT-CCCACAGTT-----------------------------AAA---ATATTGGCAGAGGAAGAGCCCTGGCACTCCAGCAGGAGCTAACGTGAAAAAGAAAATC---AATGGCAGTAGCCCTGATACAGCCACATCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTTGGCTGGCCAGA
i nomLeu3.chr6              I 4 C 0
s rheMac3.chr7              108557359 280 - 170124641 TGATTGTGACAACaccttatacagttgtaggtggcattaaatcagatggt--gtataagagtattttgcaaaaactgtaaagGAGGATGTGCCTGTAGGGGCTGGTGGTTCTCATGAGTATTACTGCTCTTCTTT-CCCACAGCT-----------------------------GAAAGAGTATCAGCAGAGTAAAAGCCCTGGTGTTCCGGCAGGAGCGAAGACAAAGAAGAAAAAA---ACTGGAAGTAGCCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCTGACCAGG
i rheMac3.chr7              I 48 C 0
s macFas5.chr7               65340765 309 + 171882078 TGATTGTGACAACACCATGTACAGTTGGTGGTGGCATTAAATCAGATGGT--GTATAAGAGTATTTTGTCAAAACTGTGAAGGAGGGTGTGGCTGTAGGGGCTGATAGTTCTCATGAGTGTCACTGCTCTTCTTT-CCCACAGTTAAAAGAATATTGGCAGAGGAAGAGCCCTGGAAAGAATATTGGCAGAGGAAGAGCCCTGGCGTTCCAGCAGGAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCTGACACTGCCGCTTCTGGTGGTCACCGCTCACCTGCGGATGTGAGTCTTGGCTGACCAGG
i macFas5.chr7              I 16540 C 0
s papAnu2.JH685126              68911 280 +    130206 GGATTGTGACAACACCTTGTACAGTTGGTGGTGGCATTAAATCAGATGGT--GTAGAAGAGTATTTTGTCAAAACTGTGAAGGAGGGTGTGGCTGTAGGGGCTGATAGTTCTCATGAGTGTCACTGCTCTTCTTT-CCCACAGTT-----------------------------AAAAGAATATTGGCAGAGGAAGAGCCCTGGCGTTCCAGCAGGAGctaacaggaaaaagaaaatc---aatggcaGTGGCCCTGACACCGCCGCTTCTGGTGGTTACCGCTCACCTGGGGATGTGAGTCTTGGCTGGCCAGG
i papAnu2.JH685126          I 4 C 0
s canFam3.chr9               55236312 277 +  61074082 TGAGAATTACAACaccttgtagggctgttggtggcattaagtcagatggcgagtatgggagtatattgt--aaactacaaagttggacatgaatacaggggtttatagttCTCATGAGCCCCACTGATTTTCCTT-TCTGTAGTT-----------------------------GAGGGAGTATCAGCAGAAGAACAGCCCTGGTGT------AGGAGCAAAGAAGAAAAGGAAGATTAAAAATGGCAGTAGCCCTGAGACTACCACTTCCAATGATTGTCACTCTCCTGAGGATGTGAGTACTGGCTGGCCAGG
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I

a score=464763.000000
s hg38.chr15_KI270850v1_alt    221050 402 +    430880 CTCCTGGGGACAGGGG-GCCCAAGGGGCAGTAGAGGGTAATTGTTAAGATTGTAGATGGACTGTTGGGtactggttaagaattctggatttgaatcctgcctctccgtctgctaagaat--------tgattagggattgattagcatatgattta---------------gggcaagttgcttgaggtctttgggcctctcttttca-----catctgtataataga-----------------------------------------------------------------------------ggtggtattttttgactt----------------------------------------------ccatttgtgaagtttaaatgagattcgttattgttgcttttatgtgaat-ccttagtacatggcctgctgcaaacacccaggacaccgaggaaatggtcgt--------tgctgtt----TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGG
s panTro4.chr15              17745235 402 -  99548318 GTCCTGGGGACAGGGG-GCCCAAGGGGCAGTAGAGGGTAATTGTTAAGATTGTAGATGGACTGTTGGGTACTGGTTAAGAATTCTGGATTTGAATCCTACCTCTCCGTCTGCTAAGGAT--------TGATTAGGGattgattagcatatgattta---------------cggcaagttgcttgaggtctttgggcctctcttttca-----catctgtataataga-----------------------------------------------------------------------------ggtggtattttttgactt----------------------------------------------ccatttgtgaagtttaaatgagatTCGTTATTGTTGCTTTTATGTGAAT-CCTTAGTACATGGCCTGCTGCAAACACCCAGGACACCGAGGAAATGGTCGT--------TGCTGTT----TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10096946 387 +  10928107 CTCCTGGGGACAGGGG-ACTCTAGGGGCAGT---------------AGATTGTAGATGGACTGTTGGGTACTGGTTAAGAATTCTGGATTTGAATCCTGCCTCTCCGTCTGCTAAGGAT--------TGATTAGGGATTGATTAGGTtatgattta---------------gggcaagttgcttgaggtatttgggtctctcttttca-----catctgtataataga-----------------------------------------------------------------------------ggtggtattttttgactt----------------------------------------------ccatttgtgaagtttaaatgagattcattattgttgcttttatgtgaat-ccttagtacatggcctgctgcaaacacccaggacacccaggaaatggtCAT--------TGCTGTT----TGATTTTCCTCATCCCCAGTCTCAAGGGGGAAGCCAGACCAATGAGAAGAGCCACTTGTCATCAGGCTGTCCCTTTA-G
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              108557639 370 - 170124641 CTCCTGGGGACAGGAG-TCCCAAGGGGcagtaaaggataattgttgagat-----------tgctgggtactggtagagaattgtgggtttgaatcctgcctctccgtctgcta-----------------------------ggcatctgactta---------------tggcaaattgcttgagctctttgagcctgtcttttca-----catctgtaaaatagg-----------------------------------------------------------------------------ggtagtagtgtttgactt----------------------------------------------ccatttgtgaagtttaaatgagattccttattattgtttttatgttaat-ccttagtacatggcctgctgtaaacagccagtatactcaggaaatggtcat--------tgctgtt----TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCTGGGCCAATGAGTACAGCCACTTGCCATCAGGCTGTCCCTTTAGG
i rheMac3.chr7              C 0 I 1196
s macFas5.chr7               65341074 398 + 171882078 CTCCTGGGGACAGGGG-GCCCAAGGGGcagtagaggataattgttaagat-gtgaatggactgttgggtactggttaagaattctgggtttgaatcctgcctctccatctgctaatgat--------tgattagagattaattaggatatgattta---------------gggcaagttgcttgaggtcttcaggcctctcttctca-----catctgtataataga-----------------------------------------------------------------------------ggtggtattttttgactt----------------------------------------------ccatttgtgaagttgtaatgagat---ttgttatcgcttttatgtgaat-ccttagtacatggcctgCTTTAAACACCCAGGACACCGAGGAAATGGTCAT--------TGCTGTT----TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGACCAAAGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              69191 402 +    130206 CTCCTGGGGACAGGGG-GCCTAAGGGGCAGTAGAGGATAATTGTTAAGATTGTGGAAGGACTGTTGGGTACTGGTTAAgaattctgggtttgaatcctgcctctccATCTGCTAATGAG--------TGATTAGGGATTCATTAAGATATGATATA---------------GGGCAAGTTGCTTGAGGTCTTCGGGTCTCTCTTTTCA-----AATCTGTATAATAGA-----------------------------------------------------------------------------GGTGGGATTTTTAAACAT----------------------------------------------CTAtttgtgaagtttaaatgagatttgttattgttgtttttctgagact-CCTTAGTACATGGCCTGCTGTAAACACCCAGGACACCCACGAAATGGTCAT--------TGCTGCT----TGAGTTTTCTCACTCCCAGTCTCAA-GGGGAAGCCAGGCCAATGAGAAGAGTCACTTGCCATCAGGCTGTGCCTTTAGG
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55236589 541 +  61074082 TTCCTGGGGCCAGGGGTGTTTGAGGGGCAGTAGAGGGTGGTGGTTGATACTGTGGAGGAGATGTCAGGTAC--------------GGATTTGAATCCTACCTCTCCCTCTGCTGGGAATATGCCCCATCAATAAAGTTGGGGTAATA-ATGTCTTAACACTGGTGACACTGGAATGAGATGGTTGATTTTTTTTG---tttcttttaagggtttatttatttgagagagagcagggggaggggcaaaggaagagggagagagaatcctcaagcagactccctgctgagcacggagcctgatgtctggctggatcccatgactctgagatcatgacctgagccggaagaactcaggagtcggacacttaaccaactaagctgtccagat--gccccATTGATGTTGTTTTTATATTAATCCCTTAGGGCCTGGTGTGGGATAAGCATTCAG----TCAAGG--GTAGTCCTATTTGACATACTGACCTGGTGACTTTCCTCATCCCTGGCTTCAGGGGGGAAGCCAGG-CAGTGAGAATAGCCATCTGCCATCACACTGTCCCTATAGG
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=24655.000000
s hg38.chr15_KI270850v1_alt    221452 23 +    430880 AGTCACTGAAAGGGCCCCAGGGT
s panTro4.chr15              17745637 23 -  99548318 AGTCACTGAAAGGGCCCCAGGGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10097333 22 +  10928107 AGTCACTGAAAGGGCCCCA-GGT
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7               65341472 23 + 171882078 AGTTACTGAAAGGACCCCAGGGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              69593 23 +    130206 AGTCACTGAAAGGGCCCCAGGGT
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55237130 23 +  61074082 AAGCACCAAAAGAGACCCAGGGT
i canFam3.chr9              C 0 I 4609
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e rheMac3.chr7              108558009 1196 - 170124641 I
e nomLeu3.chr6              102175222  0 + 121039945 C

a score=200372.000000
s hg38.chr15_KI270850v1_alt    221475 206 +    430880 GGGATGG-------TGGGGAGATAAGAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGAAAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTTTGCCAGTTGATGGGGGAAGAAAGGAAGTCAGAGGGCTTAGACAGTGAGGGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGGAGTCAGCAACAGGTATCTACGGGGAGGGCCG
s panTro4.chr15              17745660 206 -  99548318 GGGATGG-------TGGGGAGGTAAGAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGAAAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTTTGCCAGTTGATGGAGGAAGAAAGGAAGTCAGAGGGCTTAGACAGTGAGGGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGCAGTCAGCAACAGGTATCTACGGGGAGGGCCG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10097355 205 +  10928107 GGGATGG-------TGGGGAGATAAGAACCATGAGAGAAGTTGGCACAAAGGAGTTATGGGACAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTTTGCCAGTTGATGG-GGAAGAAAGGAAGTCAGAGGGCTTAGACAGTGAGGGGGGACAGA--ACTTCTCCATGT--GCACTCTCATCTCTTGCAGTGAGCAACAGGTATCTACGGGGAGGGCCC
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7               65341495 204 + 171882078 GGGATCG-------TGGGGAGATAAAAACCATGAGAGACGTTGGCACAAAGGAGTTATGGGACAAAGGGTGCAAGATAGGCAGAAAAGAAACTTTTGTCAGTTGATGG-AGAAGAAAGGAAGTCAGAGGGCTTAGACACTGA-GGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGTAGTCAGCAACAGGTGTCTACGGGGAGGGCCC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              69616 204 +    130206 GGGATGG-------TGGGGTGATAAAAACCATGAGAGAAGTTGGCACAAAGGAGTTATGGGACAACTGGTCCAAGATAGgcagaaaagaaatgtttgtcagttgatgg-ggaagaaaggaagtcagaggGCTTAGACACTGA-GGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGTAGTCAGCAACAGGTGTCTACGGGGAGGGCCC
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55241762 192 +  61074082 GGGATGGATGATGACGGGGGGCTAAGAACCAGGAGGAG---TGGCACAAAGGAG------------GGGTT--AGTTAGGCAGAAAAG-----TTTG-CAGCTGATGG-GCAGGATGAGGAGTCAGAGGGCTTAGGTACTGG-GGCGGGCAGAGTGCGCCTCCATGTGAGCCCTTTCGTGTCTCCTAGTCTTCATCCTACATCAATGGGGAGGGCCT
i canFam3.chr9              I 4609 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e rheMac3.chr7              108558009 1196 - 170124641 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=1248585.000000
s hg38.chr15_KI270850v1_alt    221681 911 +    430880 TGCATCCTCTACTACCCTGCAGGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTTGTTGCCCCTCTGCCAGCTGAGGCAGCCC--ACACACCC-CCACCAGCCCTAATGATTATTCTCTCTACCCCTCCCCACAATCTTTCTCCAACTCCTTCT----------CTCTGCATGCACCTCAGAGCCAGTACCAAGAACTAGCAGTAGCCCTGGATTCAAG-CTCCGCAATAATCAGTCAACTCACTGAAAACATCAATTCACTGGTAAGAGTCCAGTGGGGTCCCCTGATTACAGCTGGTCAATCCTGGACTCCAGTTTCCTCTTGGGGCCCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCT-GGGCACCCAGGTCTCACCTGGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCTG-CACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCTAGTCCTTGCCACACATGCCCTGGGGTTGTCACCTCTCTGGGAAGCACTAGCCTgactggttgtta-ggggtccatattcctgccctgcctcagtccctaatttgct----ttttgagtctggacaagccatctctcctctttatgctcgtgtttctggaggaggtaga-----gagtatcaaaggtctcggttagctctgaaagtcagagattTAAAGGcccctagaatggaaagctcagggcgaagggctcctgtctgtcctttgctgttttatatctctgctatgaagaactgtacctggcctgt---------------acatgctcagtaaatgtttgttgaatgaatgCACGTTTCTAAATCACAAACTGGCAGAAGGGGGGTGGGCC----TTTCTCAAACTCTGTCTCTGGAG
s panTro4.chr15              17745866 911 -  99548318 TGCATCCTCTGCTACCCTGGAGGATCTGGAGGTCAGAGGCCCTGGGCCGAGGTGCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTTGTTGCCCCTCTGCCAGCTGAGGCAGCCC--ACACACCC-CCACCAGCCCTAATGATTATTCTCTCTACCCCTCCCCACAATCTTCCTCCAACTCCTTCT----------CTCTGCATGCACCTCAGAGCCAGTACCAAGAACTAGCAGTGGCCCTGGATTCAAG-CTCCGCAATAATCAGTCAACTCACTGAAAACATCAATTCACTGGTAAGAGTCCAGTGGGGTCCCCTGATTACAGCTGGTCAATCCCGGACTCCAGTTTCCTCTTGGGGCCCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCT-GGGCACCCAGGTCTCGCCTGGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCTG-CACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCTAGTCCTTGCCACACATGCCCTGGGGTTGTCACCTTTCCGGGAAGCACTAGCCTgactggttgtca-ggggtccatatttctgctctgcctcagtccctaatttgct----ttttgagtctggacaagtcatctctcctctttatgctcgtgtttctggaggaggcaga-----gagtatcaaaggtctcggttagctctgaAAGTCAGAGATTTAAAGGcccctagaatggaaacctcagggccaagggctcctgtctgtcctttgctgttttatatctctgctatgaagaactgtacctggcctgt---------------acatgctcagtaaatgtttgttgaatgaatgCACGTTTCTAAATCACAAACTGGCAGAAGGGGGGTGGGCC----TTTCTCAAACTCTGTCTCTAGAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10097560 911 +  10928107 TGCATCATCTGCTACCCTGAAGGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTTGTTACCCCTCTGCCAGCTGAGACAGCCC--ACACCCCCGCCACCAGCCCTAATGATTGTTCTCTCTACCCCTCCCCACAATCTTCCTCCAACTCCTCTT----------CTCTACATGCACCTCAGAGCCAGTACCAAGAACTAGCAGTAGCCCTGCACTCAAG-CTCCACAATAATCAGTCAACTCAGTGAAAACATCAATTCACTGGTAAGAGTCCAGTGGGGTCCCCTGATTCTAGCCTGTCAATCCTGGACTC--GTTTCCCCTTGGGGCCCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCTGGGGCACCCAGGTCTCACCTGGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCTG-CACTGCCCTTTTTGCTGACTCTCTCTTCTCCTGACACCCCTGCTCTTATCCTTGCCACACATGCCCTGGGGTTGTCACCTCTCAAGGAAGCACTAGCCTgactggttgtca-ggggcctgaatttctgccctgcctcagtccctaatttgct----ttttgagtctggacaagccatctctcctctttatgctcgtgtttctggaggaggtaga-----gagtatcaaaggtctccgttagctgtgaaagtctgagattTAAAGGcccctagaatgaaaacctcagggccaagggctcccatctctgctttgctgtcttatgtctctgctatgaagaactctacctggcttct---------------acgtgctcagtaaatgtttgttgaatgaatgCACCTTTCTAAATCACAAGCTGGCAGAATCGGGGTGGGCC----TTTCTCAAACTCTGTCTCTAGAG
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              108559205 905 - 170124641 TGCATCATCTGTTACCCTGAAGGATCTGGAGGTAAGAGGCCCTGGGCTGAGGTGCGGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCTCACAGCAGAGGCTGGGTGCCCCTCTACCAGCTGAGACAACCCCCACACA-----CCCCAGCCCTAATGATTGTTCTCTCCACCTCTCCCTGCAGTCCTCCTCCAACTCATCCT----------CTCTATATGCGCCTCAGAGCCGGTACCAAGAACTAGCAGTATCCCTGGACTCAAA-CTCTGCGACAATCAATCACCTTAATGAAAATATAGAATCATTGTTAAGAGTCCAGTGGGGTCCCCTGATTCTATGCTGCCAATCCTAGTCTTTAGTTTACCCATGGGGCCCTGAAGAAAGGGGCTGGGGGCCCCTGGTACCAAGGGCAAATGGGAAGCTGGAGCACCCAGGCCTCACCTGGAGGGACTCCAGAGCAAGGAGCATGTAGCATGGCTCTTCTGTCGCTGCCCTCTTTGCCGACTCTCTGTTCTCCAGACACCTCTGCTCCAGTCCTTGCCACACACACCCTAGGGTTGTCACCTCTCAGGGAAGCACTAGCCTgattggttgtcaggggccccgtatttctgccctgactcagtcctgaatttgct----ctttgagtctggacaagtcacctctcctccttgggctcatgtttctggaggaggtaga-----gcat--caaaggcctctgttagctctgagagtctgagattTAAAGGcccctagaatggaaacctcatggccaagggctcctgtctgtccttttccatc--ctatatttgccatggagaaccgtacctggctcgt---------------atgtgctcagtaagtgtttgttgaatgaacgCACCTTTCTAAATAACAAGCTGGCAGAA---GGGTGGGCT----TTTCTCAGACTCCGTCTCTGGAG
i rheMac3.chr7              I 1196 I 2323
s macFas5.chr7               65341699 892 + 171882078 TGTGTCATCTTCTACCCTGAAAGATCTAGAGGTAAGAGGCCCTGGGCCGAGGTTCAGTGACCCTG-------------CAACCTCCTCCCACAGCAGGGGCTGGTTGCCCCTCTGCCAGCTGAGACAGCCCAGACACACCCCTCCCCAGCCCTAATGACTCTTCTCTCTACCCCTCCCCGCAATCCTCCTCCAACTCCTCCT----------CTCTGCATGCACCTCAGAGCCAGTACCAAGAACTAGCAGGAGCCCCGGACTCAAAGCTCCACAATAATCAGTCAACTCAGTGGAAACATCCATTCACTGGGAAGAGTCCAGTGGCGTCCTCTGATTCCACGCTGCCAATCCTGGACTC--GTTTCCCCTTGGGGCCCTGAGGAAAGGGGCT-GGGGCCCCTGGTGCCATGGGAAAATGGGGAGCTGGGGCACCCAGGCCTCACCTGGATGGACCCCAGAGCACAGAACGTGCAGCATGGCTCTTCTG-CACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCGAGTCCTTGCCACACACGCCCTGGGGTTCTTCCCTCTCAGGGAAGCACTAGCC----TGTTTGTCA-GGGTCCCGTATTTCTGTCCTGACTCAGTCCCTAATTTGCT-----TTTGAGTCTGGACAAGCCTTCTCTCCTCCTTGGGCTCGTGTTTCTGGAGGAGGTAGA-----GAGTA-TCAAGGTCTCTGTTCGCTCTGGGAGTCCGAGATTTAAAGGcccctagaatggaaacctcagggccaagggctcctgtctgtccttttctgtcttctatctccgctgtgaagaaccacacctggcctgt---------------aggtgctcagcacatgtttgttgaatgaacgCACCTTTCTAAATCACAAGCTGGCAGGAC--GGGGGGGCC----TTCCTCAAACTCTGTCTCTAGAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              69820 908 +    130206 TGTGTCATCGACTAACCTGAAAGATCTGCAGGTAAGAGGCCCTGGGCCGAGGTTCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTGGTTGCCCCTCTGCCAGCTGAGACAGCCCAGAcacacccctccccagccctaaTGAGTGTTCTCTCTACCCCTCCCCGCAA---TCCTCCAACTCCTCCT----------CTCTGCATGCACCTCAGAGCCAGTACCAAGAACTAGCAGGAACCCCGGACTCAAAGCTCCGCAATAATCAGTCAACCCAGTGAAAACATCCATTCACTGGGAAGAGTCCAGTGGCGTCCTCTGATTCCACGCTGCCAAACCTGGACTC--GTTTCCCCTTGAGGCCCTGAAGAAAGGGTCTAGGGACCCCTGGTGCCAAGGGTAAATGGGGAGCTGGGGCA-CCAGGCCTCACCTGGATGGACCCCAGAGCACAGACCGTGCAGCATGGCTCTTCTG-CACTGCCCTCTTTGCTGGCTCTCTCTTCTCCAGACACCCCTGCTCGACTCCTTGCCACACATGCCCTGGGGTTGTTGCCTCTCAGGGAAGCACTAGCCTGGCTGTTTGTCA-GGGGCCTGTATTTCTGCCCTGACACAGTCCCTAATTTGCT----TTTTGAGTCTGGACAAGCCTTCTCTCCTCCTTGGGCTCCTGTTTCTGGACGAGGTACA-----GAGTATCAAAGGTCTCTGTTAGCTCTGGGAGTCCGAGATTTAAAGGCCCCTAGAATGGAAACCTCAGGGCCAAGGGCTCCTGTCTGTCCTTTTCTGTCTTATATCTCTGCTGTGAAGAACCATACCTGGCCTGT---------------AGGTGCTCAGcagatgtttgttgaatgaacgcACCTTTCTAAATCACAAGCTGGCAGAAC--gggggggCC----TTtctcaaactctgtctctagAG
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55241954 862 +  61074082 GGCATCTTCTGCTAACATAAAGGATCTAGAGGTAAGTGGCACTAGACCATGGTCTCAGGACCCTGCAGGCCAGCCC--CCATCTCCTCCCACAGCGGGGGCTGGGTGCCCCGCTGCCAGCCCAGACAGCCC--------------CCAACCCTAATGACTGCTCTCTCTACCTCTCCC--CAACCCTCGTCCAActcctcctcctcctcctcctcTGCATGCGCCTCAGAGCCGGTACCAAGAGCTATCACTAGCCCTGGACTCCAG-CAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTGGTAAGAGTCCAGTGGGGTCCCCTGATTCCACACTGCCAATCTGGGGCTCCAGTTTTTCCCTGGGGCTCTGAAGAAAGGGGCTGGGGGACCCTGGTGCTAAGGGAGAATGGGGTGTCGGGGGGTTTGAGTCTCAGGTGGAGGGACCCCAGAGCA-------TGCGGCATGGCTCTCTGT-GGCTGCCTTCTTTGCCTCCT-TCTGTTCTCCGGACACCCCTGCTTGAGTCCTTTCCATACTTGCCCCAGGGCTGTAGCCTCTGgaggaagcactggcttggctggt-------------gtgctcctgccctgacccaacccctaatttgctccatctttgaacttggatgagtcacctttcctctctgggcttcagtctcctgaggaggtagaattagaggtgtccaaggtcccctttagctcagagaatcAG--------------------------------------------------gtccttctcattcctgtatccctgctattaagaacagaacctggcctgtgggtacttaggcccagggtgctcagtaaatacttgttgaatgaaAGCACCCTTCCAAATCACGAGCTACCAGAA---GGGTAGTCTCTTGCTTCTCAACTCCTGTTTCTGGAG
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=4230.000000
s hg38.chr15_KI270850v1_alt    222592 3 +    430880 GTT
s panTro4.chr15              17746777 3 -  99548318 GTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10098471 3 +  10928107 GTT
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7               65342591 3 + 171882078 GTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              70728 3 +    130206 GTT
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55242816 3 +  61074082 GTT
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958 1 -  24206276 I
e rheMac3.chr7              108560110 2323 - 170124641 I
e nomLeu3.chr6              102175222 0 + 121039945 C

a score=3585.000000
s hg38.chr15_KI270850v1_alt    222595 7 +    430880 CACCAGC-
s panTro4.chr15              17746780 7 -  99548318 CACCAGC-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10098474 7 +  10928107 CAACAGC-
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              108562433 7 - 170124641 CACCAGC-
i rheMac3.chr7              I 2323 C 0
s macFas5.chr7               65342594 4 + 171882078 ---CAGC-
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              70731 4 +    130206 ---CAGC-
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55242819 5 +  61074082 ---TATCC
i canFam3.chr9              C 0 I 4002
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958 1 -  24206276 I
e nomLeu3.chr6              102175222 0 + 121039945 C

a score=146795.000000
s hg38.chr15_KI270850v1_alt    222602 114 +    430880 -CCCTCCCTCCAGGACCCTTTTCCCCCTTTGCTTTGGGCAGGTTCGCACATCTAAGGAGGAGAAGAAGCATGAGATACATCTGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACT
s panTro4.chr15              17746787 114 -  99548318 -CCCTCCCTCCAGGGCCCTTTTCCCCCTTTGCTTTGGGCAGGTTCGCACATCTAAGGAGGAGAAGAAGCATGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10098481 113 +  10928107 -CCCTCTCTCCAGGGCCC-TTTCCCCCCGTGCTTTGGGCAGGTTCACACATTGAAGGAAGAGAAGAAGCATGAGATACATCGGGTAGAGAAGCTTGGGAGGAGCTTGTTCAGACT
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              108562440 110 - 170124641 -CCCTCTCTCCAGGGCCC-TTCCCCTCTGTGCTTTGGGCAGGCTTGCACATTGAAGGAGG---AGAAGCGTGACATACATCGGATACAGGAGCTGGAGAGGAGCTTGTCCGAACT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65342598 113 + 171882078 -CCCTATCACCAGGGCCC-TTTCGCCCTGTGCTTTGGGCAGGTTCACACATTGAAGGAGGAGAAGAAGCGTGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              70735 110 +    130206 -CCCTATCACCAAGGCCC-TTTCGCCCTGTGCTTTGGGCAGGTTCCCATATTGAAGGAGG---AGAAGCGGGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTCTTCAAACT
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55246826 114 +  61074082 CCCCCCACCCATGTACCC-ATCCCCCCTGTGATTTGGGCAGATGCACAGATTGAGGGAAGAGAAGGAGCACAGCATGAGTCAGGTGCAGGAGTTGGAGGCCAACTTGGCTGAACT
i canFam3.chr9              I 4002 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=601982.000000
s hg38.chr15_KI270850v1_alt    222716 319 +    430880 CAAAAACCAGACGGGTAAGATGGGGCTGGCATGACCTGGCAGCTGGACTGGCATTAGAGGGCT-GTGGGGGTGACTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTGTGCCAGGGGAggacaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagagggagGAGTGCCCATTGTCACCCACCC---ACAGTGCT--------------------CTCTATCTGAAAGTGACTTGGAAGATTGTCTACCATCCGGGTGTGAGGAGTCATTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGGAG----------
s panTro4.chr15              17746901 319 -  99548318 CAAAAACCAGACGGGTAAGATGGGGCTGGCATGACCTGGCAGCAGGACTGGCATTAGAGGGCT-GTGAGGGTGACTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTGTGCCAGGGGAggacaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagtgggaggagtgCCCATTGTCCGCCACCC---ACAGTGCT--------------------CTCTATCTGAAAGTGACTTGGAAGATTGGCTACCATCCGGGTGTGAGGAGTCATTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGGAG----------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10098594 319 +  10928107 CAAAAACCAGAAGGGTAAGATGGGGCTGATGTGACCTGGGAGCAGGACTGGCATCAGAGGGCT-GTGGGGGTGACTTAGAATATCCCAGGGAGGTAGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTGTGCCAGGAGATggcaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagagggagGAGGGCCCATTGTCAGCCACCC---ACAGTGCT--------------------CTCTATGTGAAAGTGACTTGGAAGATTGGCTACCATCTGGGTGCCAGGAATCATTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGGAT----------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175222 319 + 121039945 CAAAAACTAGATGGGTAAGATGGGACTGGTGTGACCTGGGAGCAAGACTGGCATCAGAGGGCT-GTGGGGGTGACTTAGAATCCCCCAGGGAGGTGGGTGGGTGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTGTGCCAGGAGACggcaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagagggagGAATGCCCGTTGTCAGCCACCC---ACAGTGCT--------------------CTCTAGCTGAAAGTGACTTGGAAGACTGGCTACCATCCGGGTGTGAGGAATCATTATCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGGAG----------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108562550 316 - 170124641 CAAACCCCAGATGGGTAAAATGGGGCTGGTGTGACGTGGGAGCAGGACCAGCATCAGAGGACT-GTGGGGGTGGCTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTGTGCCAGGAGACTgcaagttttgtcatctccatgagcctcagggtccccatcagcaaagagggagGAGTGCCCATTGTCAGCCACCC---ACAGTGCT--------------------CTCTATCTGAAAGTGGCTTGGAA-ATTGGCTACTTC--GGGTGCGAGGAATCATTAGCAGTGAGGCCAAGCTTGGGAAGCCTGAGAGGAG----------
i rheMac3.chr7              C 0 I 71
s macFas5.chr7               65342711 318 + 171882078 CAAACACCAGAGGGGTAAGATGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCAGAGGGCT-GTGGGGGTGGCTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAGAGAGGTCTGTGCCAGGAGACTGCAAGCCTTGTCATCTGCTTGAGCCTTGGTGTCCCCATCAGCAAAGAGGGAGGAGTGCCCATTGTCAGCCACCC---ACAGTGCT--------------------CTCCAT-TGAAAGTGGCTTGGAAGATTGGCTACCACCTGGGTGCGAGGAATCCTTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGGAG----------
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              70845 318 +    130206 CAAACACCAGAGGAGTAAGATGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCAGAGGGCT-GTGGGGGTGGCTTAGAATGCcccagggaggtgggtggatggaagggctttgaggcagagggagagaggtcTGTGCCAGGAGACTGCAAGCCTTGTCATCTGCTTGAGCCTTGGTGTCCCCATCAGCAAAGAGGGAGGAGTGCCCATCGTCAGCCATGC---ACAGTGCT--------------------CTCCAT-TGAAAGTGGCTTGGAAGATTGGCTACCATCTGGGTGCGAGGAATCCTTAGCAGTGAGGCCCAGTTTGGGAAGCCTGAGAGGAG----------
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55246940 308 +  61074082 GAAGAACCAGATAGGTAAGCTGAGGCAGGAG-GATCTGGGAGCAGGATTGGTGCCAGAGGGCTGGTGAGGATGCCTTCAAATGCCCTAAGGATGTGGGTGGATGGAAGGGGACTGTGGCCCAGGGAAAGAGGTCCGTACTAGGAGTTGGCCAGGTT---------------------------------------GGGCAGTGTGCCCGCTGGCAACCACTCCGAATTGTCCTGAGCATAAAAATATTAAAAACTCTTTTCAAAAGTGTCTTGAAAGAGTGCATATCCCCTGAGGGTGAGGGATTGTGAGCCAGGAAGCCAAGGTTTGGG-----GCGAGGAGGCCCAGTTAG
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I

a score=34100.000000
s hg38.chr15_KI270850v1_alt    223035 41 +    430880 GAGCTGTGCACCAAAGGGAGGA--------------tttttttttttttttttGA
s panTro4.chr15              17747220 43 -  99548318 GAGCTGTGCACCGAAGGGAGGA------------ttttttttttttttttttttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10098913 39 +  10928107 GAGCTGTGCACCAAAGGGAA----------------ATTTTTTTTTTTTTTTTGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175541 41 + 121039945 GAGCTGTGCACCAAAGGGTGGA--------------TTTTTTTTTTTAAGGGGGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343029 44 + 171882078 GAGCTCTGCACCAATGGGAGGA-----------ttttttttttttttttttttGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              71163 55 +    130206 GAGCTTTGCACCaatgggaggatttttttttttttttttttttttttttttttga
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55247248 31 +  61074082 GAGCTGTGGATCAAGAAGAGGG--------------CTTTTTTGA----------
i canFam3.chr9              C 0 I 7
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e rheMac3.chr7              108562866 71 - 170124641 I

a score=365200.000000
s hg38.chr15_KI270850v1_alt    223076 219 +    430880 GAATCCAGAGGCCCTTATTCTCTGCTTGCTTTCT-----------CAGCTGAACCCCTGGCCCCACAGCCCCCAGCAGGGCCATCTAAGGTGGAGCA------GCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTAGAGAGTGTGGGAAGACAGCTCCAGGCTGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAGACAGGAGGAGAGGCTACGTGAACAGGAG
s panTro4.chr15              17747263 198 -  99548318 AACTCTAGAGGCCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCATCTAAGGTGGAGCA------GCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTAGAGAGTGTGGGAAGACAGCTCCAGGCTGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAG---------------------ACAGGAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10098952 198 +  10928107 GAATCCAGAGGCCCTTATTTTCTGCTTCTTTTCT-----------CAGCTGAACCCCTGGCCCCAGAGCTGCCAGCAGGGCCCTCTAAGGTGGAGCA------GCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTGGAGAGTCTGGGAAGACAGCTCCAGGCCGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGAAG---------------------ACAGGAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175582 203 + 121039945 GAATCCAGAGGCCCTTATTTTCTGCTTCCTTTCT-----------CGGCTGAACC----------------CCAGCAGGGCCCTCTGAGGTGGAGCA------GCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTGGAGAGTGTGGGAAGACAGCTCGAGGCCGAGGTAGAAAACAATCAGATGCTGATTCTCCTGAACAAGAGGCAGGAGGAGAGTCTGTATGAACAGGAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108562937 219 - 170124641 GAATCCAGAGGCCCTTATTGTCTGTTTCCTTTCT-----------CAGCTGAGCCCCTGTCCCCAGCACCCCCAGCAGGGACTTCTGAGGTGAAGCA------GCTACAAGATGAGGCCAGGCACCTGAGGAAGGAGGTGGAACGTTTGGAGGGAAAGCTGCAATCCCAGGTGGAAAACAATCAGGCCTTGAGTCTCCTGAGCAAGGAACAAAAGGAGAGCTTTCGGGATCAGGAG
i rheMac3.chr7              I 71 C 0
s macFas5.chr7               65343073 219 + 171882078 GAATCCAGAGAACCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAACCCCGGGCCCCAGATCCCCCAGCAGGGCCCTCTGAGGTGGAGCA------GCTACAAGATGAGAACAAACACCTAAGGAAGGAGCTGGAGAGTCTGGGAAGACAGCTCCAGGCCGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAGACAGGAGGAGAGGCTACGTGAGCAGGAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              71218 219 +    130206 gaatccaGAGACCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAACCCCGGGCCCCAGATTCCCCAGGAGGGCCCTCTGAGGTGGAGCA------GCTACAAGATGAGACCAAACACCTAAGGAAGGAGCTGGAGAGTCTGGAAAGACAGCTCCAGGCCGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAAcaggagacaggaggagaggatacgtgagcaggac
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55247286 236 +  61074082 GAGGTGAGAGGCCCCTAGCGTGTGTCCCCCTCCCCCTGCTCCCCACAGTGGTGCCCCCAGCCCAGGAGCCCCCAGCCAGGCCCTTGGAGGAGGAGCAGCAGCGGCTGCACGCCGAGACTGAACAACTACAGAAGGAGCTGGAGAGCCTGGCCGAGCAGGTGCAGGCCCAAGTGAAAGACAACGAAGGTTTGAGTCGCCTGAACCGGGAGCAGGAGCAGCGGCTGCTGGAGCTGGAG
i canFam3.chr9              I 7 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I

a score=42996.000000
s hg38.chr15_KI270850v1_alt    223295 27 +    430880 GAGAGGCTACGTGAACAGGAGGAGAGG
s panTro4.chr15              17747461 27 -  99548318 GAGAGGCTACGTGAACAGGAGGAGAGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099150 27 +  10928107 GAGAGGCTACGTGAACAGGAGGAGAGG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175785 27 + 121039945 GAGAGGATACGTGAACAGGAGGACATG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108563156 27 - 170124641 GAGAGGCTCTGAGAGCAGGAGGAGAGG
i rheMac3.chr7              C 0 I 418
s macFas5.chr7               65343292 27 + 171882078 GAGAAGATACATGAGCAGGAGGAGAGG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              71437 27 +    130206 gagaggctacatgagcaggaggagagg
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247522  0 +  61074082 C
e chlSab2.chr29              21075958  1 -  24206276 I

a score=6205.000000
s hg38.chr15_KI270850v1_alt    223322 9 +    430880 CTGTGTGAA
s panTro4.chr15              17747488 9 -  99548318 CTGTGTGAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099177 9 +  10928107 CTACATGAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175812 9 + 121039945 CTCTGTGAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343319 9 + 171882078 CTATCTGGG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              71464 9 +    130206 ctatctggg
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247522 0 +  61074082 C
e chlSab2.chr29              21075958 1 -  24206276 I
e rheMac3.chr7              108563183 418 - 170124641 I

a score=45801.000000
s hg38.chr15_KI270850v1_alt    223331 52 +    430880 CAGGAGGAGAGGCTGTGTGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGA
s panTro4.chr15              17747497 31 -  99548318 CAGGAGGAGAGGCTGT---------------------GTGAACAGGAGGAGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099186 31 +  10928107 CAGGAGGAGAGGCTAC---------------------GTGAACAGGAGGAGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175821 31 + 121039945 CAAGAGGAGAGGCTAT---------------------TTGAAAAGGAGCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108563601 52 - 170124641 CAGGAGGAGAGGCTGTGGGATCAGGAGGAGAGGCTACGAAAGCAGGAGGAGA
i rheMac3.chr7              I 418 C 0
s macFas5.chr7               65343328 52 + 171882078 CAGGAGGAGAGGATACGTGAGCAGGAGGAGAGGATACGTGAGCAGGAGGAGA
i macFas5.chr7              C 0 I 231
s papAnu2.JH685126              71473 52 +    130206 caggaggagaggatacgtgagcaggaggagaagctacatgagcaggaggaga
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247522  0 +  61074082 C
e chlSab2.chr29              21075958  1 -  24206276 I

a score=6927.000000
s hg38.chr15_KI270850v1_alt    223383 4 +    430880 GGCT
s panTro4.chr15              17747528 4 -  99548318 GGCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099217 4 +  10928107 GGCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175852 4 + 121039945 GGCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108563653 4 - 170124641 GGCT
i rheMac3.chr7              C 0 I 29
s macFas5.chr7               65343611 4 + 171882078 GTCT
i macFas5.chr7              I 231 C 0
s papAnu2.JH685126              71525 4 +    130206 ggct
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247522 0 +  61074082 C
e chlSab2.chr29              21075958 1 -  24206276 I

a score=12557.000000
s hg38.chr15_KI270850v1_alt    223387 15 +    430880 GTGTGAACAGGAGAA
s panTro4.chr15              17747532 15 -  99548318 GTGTGAACGGGAGAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099221 15 +  10928107 GTGTGAACAGGAGAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175856 15 + 121039945 GTGTGAACAGAAAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343615 15 + 171882078 ATGGGAGCAGGAGTG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              71529 15 +    130206 atctgggcaggagga
i papAnu2.JH685126          C 0 I 823
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247522  0 +  61074082 C
e chlSab2.chr29              21075958  1 -  24206276 I
e rheMac3.chr7              108563657 29 - 170124641 I

a score=8255.000000
s hg38.chr15_KI270850v1_alt    223402 6 +    430880 GCTGCC
s panTro4.chr15              17747547 6 -  99548318 GCTGCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099236 6 +  10928107 GCTGCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175871 6 + 121039945 GCCGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343630 6 + 171882078 GCTGCC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              72367 6 +    130206 GCTGCC
i papAnu2.JH685126          I 823 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247522 0 +  61074082 C
e chlSab2.chr29              21075958 1 -  24206276 I
e rheMac3.chr7              108563657 29 - 170124641 I

a score=55140.000000
s hg38.chr15_KI270850v1_alt    223408 45 +    430880 AGGGCAGGAGAGGCTGCTGGAAGAGGTGGAGAAGCTGTTAAAACA
s panTro4.chr15              17747553 45 -  99548318 AGGGCAGGAGAGGCTGCTGGAAGAGGTGGAGAAGCTGTTAGAACA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099242 45 +  10928107 AGGGCAGGAGAGGCTGCTggaagaggtggagaagctgttagaaca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175877 45 + 121039945 AGGGCAGGAGAGGCTGCTGGAAGAGGTGGAGAAGCTGTTAGAACA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343636 45 + 171882078 AGAGCAGGAGAGGCTGCTGGAGGAGGTGAAAAAGCTGTTGGAACA
i macFas5.chr7              C 0 I 296
s papAnu2.JH685126              72373 45 +    130206 AGAGCAGAAGAGGCTGCTGGAGGAGGTGAAAAAGCTGTTGGAACA
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55247522 18 +  61074082 CGGGCAGCCGAG--TGCTGG-------------------------
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e rheMac3.chr7              108563657 29 - 170124641 I

a score=134995.000000
s hg38.chr15_KI270850v1_alt    223453 169 +    430880 GGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGCTGGAGA---GGGAGAGGCTGCTGGACGAGGTGGAGGAGCTCCTGGAGCAGGAGAGGCTTCGGCAACAGGATGAGAGGCTGTGGCAGCAGGAGACTCTgcgggagctgg------------------------agaggttgcgggagctggagaggatgctggag
s panTro4.chr15              17747598 169 -  99548318 GGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGCTGGAGA---GGGAGAGGCTGCTGGACGAGGTGGAGGAGCTCCTGGAGCAGGAGAGGCTTCGGCAAGAGGATGAGAGGCTGTGGCAGCAGGAGACTCTGCAGGAGCTGG------------------------AGAGGCTGCGGGAGCTGGAGAGGATGCTGGAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099287 169 +  10928107 ggagaggcggcaggaggagcaggagaggtagctggaga---gggagaggctgctggatgaggtggaggagCTGCTGGAACAGGAAAGGCTTCGGGAGCAGGATGAGAGGCTGTGGCAGCAGGAGACTCTGCGGGAGCTGG------------------------AGAGGCTGCGGGAGCTGGAGAGGATGCTGGAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102175922 151 + 121039945 GGAGAGGCGGCAGGAGGAGCAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGGTTGTCGAGGTGGAGGAGCTGCTAGAACAGCAGAGGCTTCGGGAGCAGGATGAGAGGCTGTGGCAGCAGGACACTC------------------------------------------TGCGGGAGCTGGAGAGGATGCTG---
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343977 151 + 171882078 GGAGAGGCGATAGGAGGAGCAGAAGAGGCTGCTGGAGG---AGGAGCAGCTGCTGGACCAAGTGGAGGAGATGCTGGAACAGGAGAGGCTGCGGGAGCAGGATCAGAGGCTGTGGGAGCAGGAGACACTGCGGGAGCTGG------------------------------------------AGAGGATGCTGGAG
i macFas5.chr7              I 296 C 0
s papAnu2.JH685126              72418 193 +    130206 GGAgagatgggaggaggaggagaagaagctGCTAGAGC---ATGAGAGGCTGCTGCACCAGGTACAGAAGCTGCTGGAAGAGGAGAGGCTGCGGGGGCAGGATGAGAGACTCCGGGAGCAGGAGAGGCTGCTGGAGCAGGTGGAGAAGCTTTTGGAACGGGACAGGCAACaggaggagcagaagaggctgctggag
i papAnu2.JH685126          C 0 I 92
s canFam3.chr9               55247540  96 +  61074082 GGGGAGCAGGCA-GAGGAACGCAAGCAGATTCTGGAGA----------------------------------------GCATGCAGAGCGATCGCACCACCAT------------CAGCCGTGCGCTCTCCCAGAACCGC-----------------------------------GAGCTCAAG------------
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e rheMac3.chr7              108563657  29 - 170124641 I

a score=4547.000000
s hg38.chr15_KI270850v1_alt    223622 22 +    430880 ctggGGTGGGAAGCCCTGTACG
s panTro4.chr15              17747767 22 -  99548318 CTGGGGTGGGAAGCCCTCTACG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099456 22 +  10928107 CTGGGGTGGGAAGCCCTCTACG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102176073  1 + 121039945 ---------------------C
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65344128 22 + 171882078 CTGGGGTGGGAAGCCCTCTACG
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55247636  1 +  61074082 ------------G---------
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e rheMac3.chr7              108563657 29 - 170124641 I

a score=66212.000000
s hg38.chr15_KI270850v1_alt    223644 49 +    430880 AGCAGCGGGCCGAGCCACGCAGCGGCTTCGAGGAGCTGGTACGTTGCCC
s panTro4.chr15              17747789 46 -  99548318 AGCAGCGGGCCGAGTCACGCAGCGGCTTCGAGGAGCTGGTGCGTT---C
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099478 49 +  10928107 AGCAGCGGGCTGAGCCACACAGCAGCTTTGAGGAGCTGGTGCGTTGCCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102176074 49 + 121039945 AGCAGCGGGCCGAGCCACACAGCGGCTGCGAGGCGCTGGCGCGTTGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108563686 49 - 170124641 AGCAGCTGGCCgagccacattgcagcttcgaggatctggtgtgttgccc
i rheMac3.chr7              I 29 C 0
s macFas5.chr7               65344150 49 + 171882078 AGCAGCAGGCGGAGCCACACAGCAGCTTCGAGGAGCTGGTGGGTTCCCC
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55247637 49 +  61074082 AGCAGCTGGTTGAGCTGCAGAACGGCTTCGTCAAGCTGGTGTGTAGCCC
i canFam3.chr9              C 0 I 45
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I

a score=31863.000000
s hg38.chr15_KI270850v1_alt    223693 28 +    430880 CACCTGGGGAGGCTGCCCTCTTCcctag
s panTro4.chr15              17747835 28 -  99548318 CACCTGGGGAGGCTGCCCTCTTCcctaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10099527 27 +  10928107 CACCTGAGGAGGCTG-CCTCTTCCCTAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102176123 28 + 121039945 CACCTGGGGAGGCTGCCCTCTTCCCTAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108563735 28 - 170124641 tacctgtggagcctgccctcatccctaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65344199 28 + 171882078 CACCTGGGGAGTCTGCCCTCTTCcctag
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247686 45 +  61074082 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I

a score=472579.000000
s hg38.chr15_KI270850v1_alt    223721 334 +    430880 ccctcaaggcctttgtttccccacctgtaaaatggggCA--TTGTAGCCTTCACATG---AAATGGTACTTCTAAAGGCA-TCTGTGAGCC--AGA---------GCCCTGCTCTGATGGCTGTGGGAGAGAGGGGAT-ATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGCAGACACTAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGGCCACTGATTGCTTCTCTCTGTCCAGAACAACGAGAACAAG---------AGCACACTGCAGTTGGAGCAGCAAGT---AAAGGAGCT------------------------GGAGAAGTCGGGTGAGCTGAAAGAGACTGTAACCTCCGACCCAT-----CCAAGAAGATGTG
s panTro4.chr15              17747863 334 -  99548318 ccctcaaggcctttgtttccccacctgtaaaatggggCA--TTGTAGCCTTCACATG---AAATGGTACTTCTAAAGGCA-TCTGTGAGCC--AGA---------GCCCTGCTCTGATGGCTGTGGGAGAGAGGGGAT-ATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGCAGACACTAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGGCCACTGATTGCTTCTCTCTGTCCAGAACAACGAGAACAAG---------AGCACACTGCAGTTGGAGCAGCAAGT---AAAGGAGCT------------------------GAAGAAGTCGGGTGAGCTGAAAGAGACTGTAACCTCCGACCCAT-----CCAAGAAGATGTG
i panTro4.chr15             C 0 n 0
s ponAbe2.chr15_random       10099554 335 +  10928107 CCctcaaggcctttgtttccccacctgtaaaatggggCA--TTGTAGCCTTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGTC--AGA---------GCCCCGCTCTGATGGCTGTGGGAGAGAGGGGATGATTTTTCTAACCTGTCTCCACCCTTCCGGGTGCCATGGGAGGCAGACACCAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGGCCACTGATTGCTTCTCTCTGTCCAGAACAACGAGAACAAG---------AGCACACTGCAGTTGGAGCAGCAAGT---AAAGGAGCT------------------------GAAGAAGCTGGGTGAGCTGAAAGAGACGGTAACCTCCGACCCAT-----CCAAGAAGGGCTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102176151 323 + 121039945 CCCTCAAGGCCTTTGTTTCCCCACCTGTAAAATGGGGCA--TTGTAGCCTTCACATG---AAATGGTACTTCTAAAGGTA-CCTGTGAGCC--AGA---------GCCCTGCTCTGATGGCTGTGGGAGAGAGGGGATGATTTTTCTAACCTGCCTCCACCCTCCCCAGTGCCATGGGAGGCAGACGCCAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGGCCACTGATTGCTTCTCTCTGTCC---------AGAACAAG---------ACCCTACAGCTGGTGGAGCAGAAAGT---AAAGGA---------------------------GAAGAAGCCGGGTGAGCTGAAAGAGATGGTAACCTCTGACCCAC-----CCAAGAAGGGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108563763 347 - 170124641 ccctccaggcctttgtttccccacctgtaaaatggggca--gtGTAGCCCTTACATG---ACATGGTACTTCTAAAGGCA-CCTGTGAGCC--AGAGCTCATCAGGCCCTGCTCTGATGGCTGTTGGGGAGAGGGGATGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGACATGAGAGGCAGACACCAAGTTCTGGGGTCTCCACCTGTAGTGGGTGGCCAATGATTGCTTCTCTCTGTCCAGAACAATGAGAACAAG---------AGCGCACTGCAGTTGGACCAGCAAGT---AAAGGGACT---------------------GCAGGAGAAGCTGGGTGAGGTGAAGGAGACGGTAACCTCTGCCCCAT-----CCAAGAAGGGCTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65344227 335 + 171882078 ccctccaggcctttgtttccccacctgtaaaatggggCA--TTGTAGCCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCC--AGA---------GCCCTGCTCTGATGGCTGTGGGAGAGAGGGGATGATTTTTCTTACCTGCCTCCACCCTTCCCGGTGCTATGGGAGGCAGACACCAAGTTCTGGGGTCTCCAGCTATAGTGGGTGGCCAATGATTGCTTCTCTCTGTCCAGAACAATGAGAACAAG---------AGCGCACTGCAGTTGGAGCCGCAAGT---AAAGGAGCT------------------------GAAGAAGCTGGGCGAGCTGAAAGACACGGTAACCTCTGACCCAT-----CCAAGAAGGGCTG
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55247731 361 +  61074082 ccctctaggcctttgtctccccacgtgtaaatgggggaAGGGTGTATGCACCCAATGTGAAAATGGTGCCCTTGAAGGCACCCTGTGAGCCGGAGA---------GCCCTGCTGAGATGA--GTGGGGCAGAGGTGGTGAGGAC----ACCTGCCTCCACTCTTCCCTGCACTGTGGGAGGTAGACTCCATGTTCTG-----------------GGGTGGCCACTGACTCCTCTTCTCTCTCCAGTCCAACGAGAACATGGAGATTACTACCGCACTGCAGTCGGAGCAGCATGTCAAGAAGGAGCTGGCCAAGAAGCTGGGCCAGCTGCAGGAGAAGCTGGGAGAGCTAAAGGAGATGGTAACTTACCCCCCACACCAGCTGAGGAAGCCTG
i canFam3.chr9              I 45 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I

a score=271230.000000
s hg38.chr15_KI270850v1_alt    224055 221 +    430880 GGAGGCGGGC--ACCAGCCTCTGGGGAGGGGAGGTGCCAGGCCACAGGCAGCTGCAGCCT----GGGGACAGGTGACCCCAGCACCCTCCGGGGCAGTCCTAT----------GACTGTTTCTTGCTTCCTGCCCTCTGACTTTTAGAGGTGGGTAGCCCTGGGGTCCTCCCAGGTCTGGACATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATCACAGAGG--AAGAGACAGTG
s panTro4.chr15              80014433 217 +  99548318 GGAGGGGGGC--ACCAGCCTCTGGGGAGGGA--GTGCCAG-CCACAGGCAGCTGCAGCCT----GGG-ACAGGTGACCCCAGCACCCTCCGGGGCAGTCCTAT----------GACTGTTTCTTGCTTCCTGCCCTCTGACTTTTAGAGGTGGGTAGCCCTGGGGTCCTCCCAGGTCTGGACATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATCACAGAGG--AAGAGACAGTG
i panTro4.chr15             M 29513 C 0
s ponAbe2.chr15_random       10099889 221 +  10928107 GGAGGCGGGC--ACCAGCCTCTGGGGAGGGGAGGTGCCAGGTCAGAGGCAGCTGCAGCCT----GGGGGCAGGTGACCCCAGCACCCTCCAGGGCAGTCCTAT----------GACTGTTTCTTGCTTCCTGCCCTCTGACTTTTAGAGGTGGGTAGCCCTGGGCTCCTCCCAGGTCTGGACATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATTGCAGAGG--AAGAGACAGTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102176474 212 + 121039945 GGAGGCGGGC--ACCATCCTCTGAGGAGGGGAGATGCCAGGCCAGAGGCAGCTGCAGCCT----GGGGGCAGGTGACCCCAGCACCCTCCAGGGCAGTCCTAT----------GACTGTTTCTTGCTTCCTGCCCTCTGACTTTTAGAG---------CCCTAGCTCCTCCCAGGTCTGGACATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATCACAGAGG--AAGAGACAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108564110 221 - 170124641 GGAGGTGGGC--ACCAGCCTCTGGGGAGGGGAGGTGCCAGGCCAAAGGCAGCTCCAACTG----GGGGGTAGGTGACCCCAGCACCCTCCAGGGCAGCCCTAT----------GACTGTTTCTTGCTTCCTGCCCTCTGACTTTTAGAGGTAGGTAGCCCTGGGTTCCTCCCAGCTCTGGACATCATCATCCCAGCTAGAGGCATGGATTCCCCCAATCACAGAGG--AAGAGACAGTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65344562 210 + 171882078 GGAGGCGGGC--ACCAGCCTCTGGGGAAGGGAGGTGCCAGGCCAGAGGCAGCTGCAGCCT----GCGAGCAGGTGACC----------CTGGGGCAGTCCTAT----------TACTGTTTCTTGCATCTTTCCCTCTGACTTTTAGAGGTGGGGAGCCCTGGGCTCCCCCCAGGTCTGGATATCGTCATCCCAGCTAGAGCCATGGA-GCCCCCAGTCACAGGGG--AAGAGACAGTG
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55248092 218 +  61074082 GAGGACAAACCTACCTGCTCGGAGGGTGGGAGGTTGCCCAGGATGGTGCAGCTCCAGCCTGTGGGGGGACACCTGACTCCAGAGTCCTTC----CAATCCTGCCTGTGGTGCAGGCCCCTTGTCACTCCCAGCTGTCTGACTCTACAGAGTGGGTATCCCTGGG------------CTGAAGGTCCTCGTCCTGGCTAGAGAGCTCAGGCCCC-----TAACGAggtcaagagatggtg
i canFam3.chr9              C 0 I 297
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I

a score=160925.000000
s hg38.chr15_KI270850v1_alt    224276 146 +    430880 GTATAAGAGGCTCCTTATgtcgggtgtggtggctcacgcctgcaatcccagcactttgggaggctgaggcaggacaatcacttgaggtcaggagtttgagaccaacatggccaacatggtgaaagctcatctctactaaaattaaa
s panTro4.chr15              80014650 146 +  99548318 GTATAAGAGGCTCCTTATgtcgggtgtggtggctcacgcctgcaatcccagcactttgggagtctgaggcaggacaatcacttgaggtcaggagtttgagaccaacatggccaacatggtgaaagctcctctctactaaaattaaa
i panTro4.chr15             C 0 I 325
s ponAbe2.chr15_random       10100110 146 +  10928107 GTATAAGAGGCTCTTTGTgtcgggtgtggtggctcacgcctgtaatcccggcactttgggaggctgaggcaggacaatcacttgaggtcaggagtttgagaccagcatggccaaaatggcaaaagctcatctctactaaaatttaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102176686 146 + 121039945 GTATAAGAGGCTCCTTATgtcgggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggcagaacaatcacttgaggtcaggagtttgagaccagcgtggccaacatggcaaaagctcatctctactaaaattaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108564331 122 - 170124641 GTATGAGAGGCTCCTTATgccaggcaaggtggctcatgtgtgtaatcccagaactttgg------------------------gaggtcaggagtttgagaccagcctggccaacagggcaaaacctcatctctactaaaattaca
i rheMac3.chr7              C 0 I 2
s macFas5.chr7               65344772 146 + 171882078 GTATAAGAGGCTCCTTATgtcgggtgtggtggctgacgcctgtagtcccaccactttgggaggctgaggcaggagaatcacttgaggtcaggagtttgagaccagcctggctgacatggcaaaacctcatctctactaaaatttca
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I

a score=188415.000000
s hg38.chr15_KI270850v1_alt    224422 175 +    430880 aataataataataattagccaggcctggtggtgcatgcctgtaatcccagctactcaggaggctgagacacgagaatcacttgagcccgggagatgaaggttgcagtgagctgagattgcaccactgcactgcag-cctgggacacagagtg-acactctctcaaaacaaaacaaaa
s panTro4.chr15              80015121 175 +  99548318 aataataataataattagctgggcctggtggtgcatgcctgtaatcccagctactcgggaggctgagacacgagaatcacttgagcccgggaggtgaaggttgcagtgagctgagactgcaccactgcactgcag-cctgggacacagagtg-acactctttcaaaacaaaacaaaa
i panTro4.chr15             I 325 C 0
s ponAbe2.chr15_random       10100256 175 +  10928107 -aaaataataataattagccaggcctggtggtgcatgcctgtaatcccagctactcaggaggctgagacatgagaatcacttgagcccaggaggtgaaggttgcagtgagctgagattgcaccactgcactccagccctgggacacagagtg-acactgtctcaaaccaaaacaaaa
i ponAbe2.chr15_random      C 0 I 311
s nomLeu3.chr6              102176832 170 + 121039945 ----aaaaaaataattagccgggcctggtggtgcatgcctgtaatcccagctactctggaggctgagacac-agaatcacttgagcccgggaggtgaaggttacagtgagctgagatcgcaccactgcactccag-cctgggacacagagtg-acactgtccccaaacaaaacaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108564455 172 - 170124641 --aacaacaaaaaattagccaggcatgatggcacatgcctgtaatcccagctacttgggaggctgaggcatgagaatctcctgagcccgggaggtggaggttgcagtgagctggcattgcaccactgcactccag-cctgggccacgcatggcactctgtctcaaaacaaaacaa--
i rheMac3.chr7              I 2 C 0
s macFas5.chr7               65344918 173 + 171882078 --aaaaaaaaataattacctaggcttggtggtgcatgcctatcatcccagctactcaggaggctgagacacgagaatcatttgagcctgggaggtagaggttgcagtgagctgagatcacaccactggactccag-cccgggacacagagtg-acactgtctcaaaacaaaacaaaa
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I

a score=93268.000000
s hg38.chr15_KI270850v1_alt    224597 127 +    430880 cag-aaaaacaa--aaaaGACTCCTTAGATTCAAACTGGATTCCGGCCTCGGTTCCACTGGTCATAATTCAACTactttgcatctctaagtctctgtttctttaacttcaaaaggaagttagccttttcc
s panTro4.chr15              80015296 127 +  99548318 cag-aaaaacaa--aaaaGACTTCTTAGATTCAAACTGGATTCCGGCCTCGGTTCCACTGGTCATAATTCaactactttgcatctctaagtctctgtttctttaacttcaaaaggaagttagccttttcc
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102177002 128 + 121039945 cagaaaaaaaaa--aaaaGACTCCTTAGATTCAAACTGGATTCTGACCTCGGTTCCACTGGTCATAATTCAACTactttgcatctctaagtctctgtttctttaacttcaaaaggaagttagccttttcc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108564627 116 - 170124641 --------------aaaaGCctccttggattcaaactggattccagcctccattccactggtcaccattcaactacttttcatctctaagtctctgtttctttaacttcaaaaggaagttagcattttcc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65345091 126 + 171882078 ----cacaaaaaccaaaaaGTTCCTTAGATTCAAACTGGTTTCTGGACTCAGTTCTACTGGTTATCATTCAACTactttgcatttctaagtctctgtttctttaacttcaaaaggaagttagcattttct
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e ponAbe2.chr15_random       10100431 311 +  10928107 I

a score=6891.000000
s hg38.chr15_KI270850v1_alt    224724 8 +    430880 ttgcagag
s panTro4.chr15              80015423 8 +  99548318 ttgcagag
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102177130 8 + 121039945 ttgcagag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108564743 8 - 170124641 ttatggag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7               65345217 8 + 171882078 ttgcagag
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55248607 8 +  61074082 ctgcccag
i canFam3.chr9              I 297 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958 1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e ponAbe2.chr15_random       10100431 311 +  10928107 I

a score=482052.000000
s hg38.chr15_KI270850v1_alt    224732 371 +    430880 gtgctgaggattaaatgagata-atacgtggaaacattaggcatgta--gcacacttagcagatggtGGTTGGCTCCGCCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTACATGCTGGGAAAAAGGACGTGAGATTTGATGCTAGGGAAGGAGGCATGGGGTTCTAAGCAAGGGAGAC--AGTCTCTTAGG-CCTGGAGCAAGG-GGCCAGGGGCCTGGGCAGGCCACAGAGCCCCACAGTGCCCTCGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCCACCACATGTCCTCATGCCCAGGGTCTTCCGGCAGGTGGAGCTGAAGAGCCAAGAGGCTCCGAGTCTGCAGCAGCAGCCAGACCAGTACCTG
s panTro4.chr15              80015431 367 +  99548318 gtgctgaggattaaatgagata-atacgtggaaacattaggcatgta--gcacacttagcagatggtGGTTGGCTCCGCCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGCTGGGAAAAAGGACGTGAGATTTGATGCTAGGGAAGGAGGCATGGGGTTCTAGGCAAGGGAGCC--AGTCTCTTGGG-CCTGGAGCAAGG-GGTCAGGGGCCTGGGCAGGCCACAGAGCCCCACAGTGCCCTCGCTA-CCTATTAATGGGCCAGGAATCTGGAAGCCAGCCACTACATGTCCTCATGCCCAGGGACTCC--GCTGGTGGAGCTGAAAAG-CAAGAGGCTCCGAGTCTGCAGCAGCAGTCAGAACAGTACCTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10100742 367 +  10928107 GTGCTGAGGA-TAAATGAGAT--ATACGT-GAAACATTAGGCATGTA--GCACAC-TAGCAGATGGTGATTGGCTCC-CCCGCTTTTCCACCAGTCTGTGG-CTACAGTTTAAATGCTGGGAAAATGGACATGAGATTTGAGGCTGGGGAAGGAGGCATAGGGTTCTAGGCAAGGGAGGCAGAGTCTCTTAGG-CCTGGAGCAAGG-GGCCAGGGGCCTGGGCAGGCCACAGTGCCCCACAGTGCCCTCGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCCACCACATACCCTCATGCCCAGGGTCTTCCGGCAGGTGGAGCTGAAGAGCCAAGAGGCTCCAAGTCTGCAGCAGCAGCCAGACCAGTACCTG
i ponAbe2.chr15_random      I 311 C 0
s nomLeu3.chr6              102177138 371 + 121039945 ctgctgaggattacatgagata-atacgtggaaccattaggcatgta--gcacacttagcagatggtGGTTGGCTCCCCCTGCTTTTCCATCAGTCTGTGGCCTACAGTTTAAATGCTGGGAAAAAGGACGTGAGATTTAAGGCTAGGGAAGGAGGCATGGGGTTCTAGGCACGGGAGGC--AGTCTCTTAGG-CCTGGAGCAAGG-GGGCAGGGGCCTGGGCAGGCCACAGATCCCCACAGTGCCCTCGCTACCCTATTAATGGGCCAGGAATCTGGAAACCAGCCACCACATGTCCTCATGCCCAGGGTCTTCCTGCAGGTGGAGCTGAAGAGTCAAGAGGCTCAGAGTCTGCAGCAGCAGCCAGACCAGTACTTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108564751 371 - 170124641 gtgctgaggattaaatgagaga-atacatggaaacattaggcatgta--gcacacttagcagatggtGGTCGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGTGGGAAGAAGGAGATGAGATTTGAGGCTGGGGGAAGAGGCATGGGGTTCTTGGCAAGGGAGGC--AGTCTCTTAGG-CCTGGAGCAAGG-GGCCAGGGGCCTGGGCAGGTGACAGAGCCCCACAGTTCCCTTGCTACCCTATTAATGGGCCCAGAATCTGGAAGCCAGCCACCACGTGCCCTCATGCCCAGGGTCTTCCTGCAGGTGGAGCTGAAGAGCCAAGAGTCTCAGAGTCTGCAGCAGAAGTGAGACTAGTACCTG
i rheMac3.chr7              C 0 I 2136
s macFas5.chr7               65345225 370 + 171882078 gtgctgaggattaaatgagata-acacacggaaagagtaggcatgta--gtacacttagcagatggtggttGGCTCCCCCTG-TTTTCCACCAGTCTGTGGCCTACAGTTTAAATGATAGGGAAAAGCATGTGAGATTTGAGGCTGGGGAAGGATGCACTGGGTTCCAGGCAAAGGAGGC--AGTCTCTTAGG-CCTGGAGCAAGG-GACCAGGGGCCTGGGTAGGCCACAGAGCACCACAGTGCCCTTGCTACCCTATTAATGGGCCAGGAATCCGGAAGCCAGCTAGTAAATGCCCTCATGCCCAGGATCATCCTGCAGGTGGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCAGCAGCAGGGAGACCAGTACCTG
i macFas5.chr7              C 0 I 1383
s canFam3.chr9               55248615 325 +  61074082 gtgtcaagaattaaatgagaagcatgcct-gtaGTGTGAGGCATTCAGGGCGCACT---CAGATGTCCATGGGCGCACTTTGCTTTTCCA------------CTAAAGTGAAAAT----AGAAGGTGGTCATGAGGCATGAGGAAGGGTAAGGGAAGTGTGGGTCCCTGGATATAGGGGC--AGTCACTGAAGTCCTAGAGCGAGGAAGCCAGGGGCCTGGGCGGGCCGCAGAGCCTCCCGCTTTCCTCTC--------------------AGCACGGGTGCCAG-----------CCTTAGTCCCTGGGTCTTCCCACAGGTGGAGCTGAAGAGCCAGGAGGCTCAGAATCTACAGCAGCAGCGGGACCAGTACATG
i canFam3.chr9              C 0 I 1663
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I

a score=1170.000000
s hg38.chr15_KI270850v1_alt    225103  3 +    430880 -------------GAG
s panTro4.chr15              80015798  3 +  99548318 -------------GAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10101109 16 +  10928107 TGTACCGCTCTAAGAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102177509 16 + 121039945 TGTACTGCTCTAGGAG
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55248940 1663 +  61074082 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac3.chr7              108565122 2136 - 170124641 I

a score=5589.000000
s hg38.chr15_KI270850v1_alt    225106 9 +    430880 CCCCAGTCC
s panTro4.chr15              80015801 9 +  99548318 CCGCAGTCC
i panTro4.chr15             C 0 M 37738
s ponAbe2.chr15_random       10101125 9 +  10928107 CCCTAATCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102177525 9 + 121039945 CCCCAATCC
i nomLeu3.chr6              C 0 C 0
s canFam3.chr9               55250603 9 +  61074082 CCCCAGCCC
i canFam3.chr9              I 1663 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958 1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac3.chr7              108565122 2136 - 170124641 I

a score=3601.000000
s hg38.chr15_KI270850v1_alt    225115 23 +    430880 CACAAGGAGCTTGGATG-TGCGGA
s ponAbe2.chr15_random       10101134 22 +  10928107 CACA-GGAGCTTGGGTG-TGCAGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102177534 23 + 121039945 CACA-GGAGCTGGGGTGTTGCTGA
i nomLeu3.chr6              C 0 C 0
s canFam3.chr9               55250612 19 +  61074082 ----AAGAGCTTGGTGC-TGCCAA
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac3.chr7              108565122 2136 - 170124641 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=134524.000000
s hg38.chr15_KI270850v1_alt    225138 245 +    430880 CAAGCAGGGTGGTGAGTAGAGCCCTCAGGCGGGGTGGGCAGGCAGGAGCAGGGGAGGCTCGCACTGTGCCCAGATTCCCACCCCCTCCCT-CTCTCTG-------AAGATCTTAGTGAGCTGAGCCT------CACTGATAGCTTGGAGGCTGCACCGGGAGAGGACAGGGAGGGTTC---TCCCCCATGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTCCTCTAATGCAGGACTCCCCAGGAGCACCCAGGCTTG
s ponAbe2.chr15_random       10101156 238 +  10928107 CAAGCAGGGTGGTGAGTAGAGCCCTCAGGCGGGGTGGGCAGGCAGGAGCAGGGGAGGCTCGCACTGTGTTCAGATTCCCACCCCCACCCC-------G-------AAGATCTTTGTGAGGTGAGCCT------CACTGATAGCGTGGAGGCTGCACCAGGAGAGGACAGGGAGGGTTC---TCCCC-ATGAGAACCCCACTGCGCAGCAGATCCAGCAGCTGCTTCCTCTAACGCAGGACTCCCCAGGAGCACCCAGGCTTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102177557 245 + 121039945 CAAGCAGGGTGGTGGGTTGAGCCCTCAGGTGGGGTGGGCAGTCAGGAGCAGGGGAGGCTCCCACTGTGCTCAGATTCCCACCCCCCTCCCTCTCTCTG-------AAGATCTTTATGAGGTGAGCCT------CACTGATAGCGTGGAGCCTGCACCAGGAGAGGACAGGGGGGGTTC---TCCCC-ATGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTTCTGTAATGCAGGACTCCCCAGGAGCACCCAGGCTTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108567258 240 - 170124641 CAAGCAGGGTGGTGAGTAGAGCCCTCAGGTGGGGTGGGCAGGCAGGAGCAGGGGAGTCTGGCCCTGCACTGAGATCCCTGCCTCCCTCTC----TCTG-------AAGATTTTTCTGAGGTGAGCCT------GGACAACAGCGTGGAGCCCACACCAGGAGAGGCCAGGAAGGGTTC---TCCCC-ATGACAACCCCACTGCAGAGCAGATCGTGCACCTGCTTCCTGTAATGCAGGACG-CCCAGGAGCACCCAGGCTTG
i rheMac3.chr7              I 2136 I 11
s canFam3.chr9               55250631 250 +  61074082 TGGCCAGGGTGGTGAGTAGAGCCCTCAGGGTGGGTGGG---------GCGGGGAGAGCTCGCACAGCACTCAGAGCCCTGTTTCTTTCTCTCTCCCTGACCCACAAAGATCTTCGAGAGGTGAGCCTGGCTGACAATGATAATGTGGCACCTCCTCAGGGAGAGGCCCTACCAGGCCACAGTGCCC-CTGAGAACCCCACTGCACAGCAAATCATGCAGCTTCTGCAGGAGATGCAGAATC-CCCAGCCATACCTAGGTTT-
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=10043.000000
s hg38.chr15_KI270850v1_alt    225383 49 +    430880 AGTGGAGAAGCTGTTGGTACAGGAGAGGCGGCAGGAGGAGCAGGAGAGG
s ponAbe2.chr15_random       10101394 49 +  10928107 GGTGGAGAAGCTGTTGGTACAGGAGAGGCGGCACGAGGAGCAGGAGAGG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102177802 49 + 121039945 GCTGGAGAAGCTGTTGGTACAGGAGAGGCGGCAGGAGGAGCAGGAGAGG
i nomLeu3.chr6              C 0 C 0
s canFam3.chr9               55250881 12 +  61074082 -------------------------------------AAGCAAGAATCC
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac3.chr7              108567498 11 - 170124641 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=40595.000000
s hg38.chr15_KI270850v1_alt    225432 63 +    430880 CTGCATGCCATTCTTTT--CGGGCTGCCGAGAACAGGGAGCTAAACATCACCATCATCTAAGAGC
s ponAbe2.chr15_random       10101443 63 +  10928107 CTGCATGCCATTCTTTT--CGGGCTGCCAAGAACAGGGAGATAAACATCACCATCATCTAAGAGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102177851 63 + 121039945 CTGCATGCCATTCTTTT--CGGGCTGCCGAGAACAGGGAGATAAACATCACCATCATCGAAGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108567509 65 - 170124641 CTGCATGCCATTCTTTTACCGGGCATCCGAGAACAGGGAGATAAACATCATCATCATCTAAGAGC
i rheMac3.chr7              I 11 C 0
s canFam3.chr9               55250893 65 +  61074082 CTGCGTCCCCTTCTTCTACCGGGCTGATGACAATGACGAGGTGAAGATCCTGGTGATCTAAGAGC
i canFam3.chr9              C 0 I 2
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=36065.000000
s hg38.chr15_KI270850v1_alt    225495 95 +    430880 GGGTCAAGAAATTGAAAAAAAAAAACAAA--ACATTTAAGGGGTTAATATCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTTATGTT
s ponAbe2.chr15_random       10101506 88 +  10928107 TGGTCAAGAAATTTAAAAAAAATATG---------TTAAGGGGTTAATCTCCTACACAATTCATTTACTTTATTTGAATGTTAGAGCCACTTATGTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102177914 91 + 121039945 TGGTCAAGAAATTAAAAAAAAAAAAAAAG------TTAAGGGGCTAATCTCCTACACAATTCATTTACTTCATTTGAAAGTTAGAGCCACTTATGTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108567574 97 - 170124641 TGGTCAAGAAATTGAAAAACAACAACAACAAAAAGTTATGGCGTTAATCTCGTACACGATTCATTTACTTCATCTGAATGTTAGAGCCACTCATGTT
i rheMac3.chr7              C 0 I 1
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958  2 +  61074082 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=4331.000000
s hg38.chr15_KI270850v1_alt    225590 115 +    430880 TGTGTTTCTaatttatagtttaaatttatttgtgtttctaatttatagtttaaatttatttgtttctaatttatagtttaaatttatttgtgtttctaatttatagtttaaattt
s ponAbe2.chr15_random       10101594  31 +  10928107 T------------------------------------------------------------------------------------ATTTGTGTTTCTAATTTATAGTTTAAATTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6              102178005  61 + 121039945 T--------------------------ATTTGTGTTTCCAATTTATAGTTTAAATTT----------------------------ATTTGTGTTTCTAATTTACAGTTTAAATTT
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958   2 +  61074082 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac3.chr7              108567671   1 - 170124641 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=382106.000000
s hg38.chr15_KI270850v1_alt    225705 784 +    430880 atttgtgtttctaatttataatttaaatttatttgtaaaAAGTTAAATGAGAGTGGGTCTTTCTCTCATGTTCACTCTGGCATCTTTTAGCAT-----TTTTTT-AATTTGATAATTATAGGACGTTAGCATGCATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACCCACTGTATGCACACAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGC-TTTTTTAATGTTAGTACAGCCTGTATATTCATTACGGAATTCAGATAAAATTTCCTTATGTTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATTAGCTCAATATGTGGTTTGCCCTC---------------------------------------------------------------------------TGGAAACAGCCTTTCCCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGGTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTTTGGCAGGTGTGTGCAGGATAGAATATGTTTCATTTGTTCCGGTGCCAAGAATGAGCGCTGTACTACGGTAGTTCCCTTAGGATTTGTATGTGCTCTAGGCTCATGAAGATACTGCCTCATGAGCTGTGGCAGTTGTACTCTTTTTTGATGACCTGAAAAGGGATTATTTCTGAGGAATGAAAGGCTCCCATCA-TGACTGTGGATGTGGAAAACCTTTTCTAGCTGAGAGCATTTATATCTACAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTAATCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGTTGGCGTTCT
s ponAbe2.chr15_random       10101625 857 +  10928107 ATTTGTGTTTCTAAGTTATAGTTTAAATTTATTTGTAAAAAGTTAAAGGAGAGTGGGTCTTTCCCTCATGTTCACTCTGCCATCCTTTAGCAT-----TTTTTT-AATTTGATAATTATAGGACGTTAGCATACATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACCGACTATATGCACACAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGC-TTTTTTAATGTTAGTGCAGCATGGATATTCATTATGGAATTCAGACGAAATTTGCTTATGTTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATTAGGTCAATATGTGGTTTGCCCTCAAGTGCGCA--GTCTATTACTTTGTAATATGCCGCTGTGAGTACTGACATTTACAGTTGTTTAAAGGCGGAGCACTGGAAACAGCCTTTCCCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATCCCCCAGAAGAGGAAAGTGGCCTACTCTGGCAGGTGTGTGCAGGATAGAATATGTTTCATTTGTTCTGGTGCCAAGAATGAGCACTGTACTATGGTAGTTCCCTTAGGATTTGTATGTGCTCTGGGCTCATGAAGATATTGCCTCATGAGCTGTGGCAGTTGTACTCTTCTTTGACGACCTAAAAAGGGATTATTTCTGAGGAATGAAAGGCTCCCATCA-TGACTGTGGATGTGGGAAACTTTTTCTAGCTTAGAGCATTTATATCTACAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTAATCACATGACAACATGTCCCAGCACACAAAAGGGCACTGGTTGGCATTCT
i ponAbe2.chr15_random      C 0 I 184
s nomLeu3.chr6              102178066 859 + 121039945 ACTTGTGTTTCTAATTTATAGTTTAAATTTATTTGTGTTTCTATAAAGGAGAGTGGGTCTTTCCCTCGTGTTCACTCTGGCATCCTTTAGCAT-----TTTTTTAAATTTGATAATTATAGGACGTTAGCATGCATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACCCACTATATGCACTCAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGCTTTTTTTAATGTTAGTGCAGCATGTATATTCATTACGGAATTCAGATAAAATTTGCTTATGTTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATTAGCTCAATATGTGGTTTGCCCTCAAGTGCGCA--GTTTATTACTTTGTAATATGCAACTGTGAGTACTGACATTTACAGCTGTTTAAAGGCAGAGCACTGGAAACAGCCTTTCCCCCTTTTTCTGTGTACTGGGGATGCGAGTAATAACATTTTGGGGAGCTTTTTAAATCTCCCAGAAGAGGAGAGTGGCCTGCTCTGGCAGGTGTGTGCAGGATAGAATATGTTTCATTTGTTCCGGTGCCAAGAACGAGCACTGTACTATGGTAGTGCCCCTAGGATTTGTATGTGCTCTGGGCTCATGAAGATATTGCATCATGAGCTGTGGCAGTTGTACTCTTTTTTGACGACCTAAAAAGGGATTATTTCTGAGGAATGAAAGGCTCCCATCA-TGACTGTGGATGTGGAAAACCTTTTCTAGCTTAGAGCATTTGTATCTACAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTAGTCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGTTGGCATTCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108567672 863 - 170124641 ATTTGTGTTTCTAATTTACAGTTTAAATTTATTTGTAGAAAATT-AGGGAGAGTGGATCTTTCCCTGATGTTCACTCTCACATCCTTTAGCATTTTTGTTTTTT-AATTTGATAATTGTAAGTCGTTAGCTCGCATATCGAGTTTGCCTTTACCTGGTAGGAGTTCAAGCACACAAAGACCCACTATTTGCGCAAAATTATTCTTGCTGGTTTGGAATAGGCTGCCATGGTTTTTAAAATGTTTTTGCAGCATGTATGTTCATTACAGAATTCAGATAAAATTTGCTTATGTTCTGATATTATGTTTGCTCGAATCCTAATCACAGCGAGCTCTTCATTAGCTCAATATATGGTTTGCCCTCAAGTGCACACTGTTTATTACTTTGTAATATGCCACTGTGAGTAGTGACATTTACAGTTGTTTAAAGGCTGAGAACTGGAAACAGCCTTTCCTCTATTTTCTATGTATTGGGGATGGGTGTAATAACATTTGGGGGAGCTTTTTAAATCTCACAGAAGAGGAAAGTGGCCTGCTTTGGCAGGTGCCTGCAGGATACAGTGTGTTTCCTTCGTTCTGGTGCCAAGAATGAGCGCGGTACTATGGTAGTTCCCTTAGGATTTGTATGTGCTCTGGGATCATGAAGATATTGCATCATGAGCTGTGGCCTTTGTACTCTTTCTCAATGACCTAAAAAGGGATTATTTCTGAGGAAGGAAAGGCTCCCATCATTGACTGTGGATAGGGAAAACCTTTTCTAGCTTAGCGCA--AATATATACAATACATTTTAAAATCAGAGTCCATGTTACCTATTTCAATCACATGACTACAGGTCCCATCACACAAAAGGGCACTGGTTGGCATTCT
i rheMac3.chr7              I 1 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958   2 +  61074082 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=253331.000000
s hg38.chr15_KI270850v1_alt    226489 548 +    430880 CCTTAATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAGTTTAAATGCCCCTGGAACAGGCATATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTGTGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATAGCTAGTCTTCAACCA----------TCTGACATAGGAATTTACTTCTTTTCCTTGAATGGAGAACACTTTAAAAATAATAACAAACATTATTATAAACTAATATATGTGAGAGTACTTAGTTGAAACAAAAAGGAGTTTTAGTAGACAGTATTATACTACATTTGAAAATCAAGGAGCAGTTTATGCAACGTAAAACGTTTACAAACTGCAGCACAATCTACTGTTCGTGAATGTCAAAGTGTCATGAGG-AAAGTGTCTATACAATCACAGAGTTATATTTCCTCACAAAGTTCTTTACAAAGAGTGAAATATGTTTTTATACCTCTCAGTTTCAGTTAGAGGCATATTTTGTGTAATATTTAT
s ponAbe2.chr15              80074316 548 +  99152023 TCTTAATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAGTTTACATGTCCCTTGAACAGGCATATACAGGCTCTAGTCAAGAATGAATCTGAGTGAAGGAAAGCTGTGTCACACCCGGCATTCCTCTATGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCATCTAGACCTCTCTAGCTAATACCTAGTCTTCAAGCA----------TCTGACATAGGAATTTACTTCTTTTCCTTGAATGGAAAAGACTTTAAAAATAATAACAAACATTATTATAAACTAATATATGTGAGAGTACTTAGTTGAAACAAAAAGGAGTTTTAGTAGACAGTATTATACTACATTTGAAAATCAAGGAGAAGTTTATTCAACTCAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTCATGAGG-AAAGTGTCTATACAATCACAGAGTTATATTTCCTCACAAAGTTCTTTACGAAGAGTGAAATATGTTTTTATACCTCTCAGTATCAGTTAGAGGCATATTTTGTGTAATATTTAT
i ponAbe2.chr15             I 59017 C 0
s nomLeu3.chr6              102178925 522 + 121039945 TCATGATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAGTTTAAATGTCCCTGGAACAGGC--ATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTGACACCTGGCCTTCCTCTATGTTCATGGAGCTTATTTGAGGCTGGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATGCCTAGTCTTCAACCA----------TCTGACATAGGAATTTACTTCTTCTCCTTGAATGGA-AACACTTTAAAAATAATAAGAAACGTTACTATAAACTAATATATGTGACAGTACTTAGTTGAAACAAAAAGGAGTTTTAG------------------------AAATCAAGGAGAAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTTATGAGGAAAAGTGTCTATACAATTTCAGAGTTACATTTCCTCACAAAGTTCTTTACGAAGAGTGAAATATGTTTTTATGCCTCTCGGTTTCAGTTAGAGGCATATTTTGTGTAATATTTAT
i nomLeu3.chr6              C 0 I 459
s rheMac3.chr7              108568535 554 - 170124641 TCTTTATGTAATTAGTAAAGATCATAAGAAATCCTTTCAGAGTTTTAATGTCCCTGGAACAGGC--ATACAGGCTTTAGTCAAGAATTAATTCTAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTTTTTGAGACTAGAATATTGATTTTACCATCTAGACCTCTCTGGCTAATACCTTTTCTTCAACCACATAGGTTACTCTCACATAGGAATTTACTTCTTTTCCTTGAATGGAAAACACTTAAAAAATAACAAC---CATTATTATAAACCAATATATGTGAGAGTACTTAGTTGAAACAAAAAGAAGTTTTAGTAGACAGTATTCTACTACATTTGAAAATCAAGGAGATGTTTATGCAACTTAAAATGTGTACAAACTGCAGTGCAATCTACTGTTTGTGAATGTCAGAGTATTTTGAGGAAAAGTATCTATACAATTACAGAGTTATATTTCCTCACAAAGTTCTTTATGAAGAGTGAAATATGTTCTTATACCTCTCAGTTTCAGTTAGAGGCATATTTTGTGTCATACTTAT
i rheMac3.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958   2 +  61074082 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=600.000000
s hg38.chr15_KI270850v1_alt    227037 1 +    430880 G
s ponAbe2.chr15              80074864 1 +  99152023 G
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102179906 1 + 121039945 G
i nomLeu3.chr6              I 459 C 0
s rheMac3.chr7              108569089 1 - 170124641 G
i rheMac3.chr7              C 0 I 515
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958 2 +  61074082 I
e chlSab2.chr29              21075958 1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=7856.000000
s hg38.chr15_KI270850v1_alt    227038 37 +    430880 GCTTAAAATGGACTAAAGGTCCTGTTCTTGCC-----TTGTC
s ponAbe2.chr15              80074865 37 +  99152023 GCTTAAAATGGACTAAAGGTCCTGTTCTTGCC-----TTTTC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102179907 42 + 121039945 GTTTAAAATGGACTTAAGGTCCTGTTCTTGCCTTCTATTTTG
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958  2 +  61074082 I
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac3.chr7              108569090 515 - 170124641 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=93163.000000
s hg38.chr15_KI270850v1_alt    227075 190 +    430880 TGAACTTGCCGCTTTT-GCATTCTTTGAGTTCAGTTTAAAGACAGTTACTTTAAGCCCATTTTAAACCCTCAGGCTAGAAATCGTACCACTGTTAATTAGCCACATTATTTGGTCTAACAG------TTTATCATTCTGAAACTGAGCTTACCTAATACATTGATAAATTATTTCAAAGGTATTTTTATAGTTCAAA
s ponAbe2.chr15              80074902 196 +  99152023 TGAACTTGCCGCTTTT-GCATTCTTTGAGTTCAGTGTAAAGACAGTTACTTTAAGTCCATTTTAAGCCCTCAGGCTAGAAATCGTACCACTGTTAATTAGCCACATTTTTTGGTCTAACAGTTTTTCTTTATCATTCTGAAACTGAGTTTATCTAATACATTGATAAATTATTTCAAAGGTATTTTTATAGTTCAAG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102179949 196 + 121039945 TGAACTTGCCACTTTT-GCATTATTTGAGTTCACTTGAAAGACAGTTACTTTAAGTCCATTTTAAACCCTTGGGCTAGAAATTGTACCACTGTTAATTAGCCACATTATTTGGTCTAACAGTTTTTCTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTCAAGGGTATTTTTATAGTTCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108569605 197 - 170124641 TGAACTTGCCGCTTTTCACACTATTTGAGTTCACTTGAAAGACAGTTACTTTAAGTCCATTTAAAACCCTCGGGCTAGAAATCGTACCAGTGTTAATTAGCCACATTATTTGGTCTAACAGTTTTTCTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTTGAAGGAATTTTTATAGTTCCAG
i rheMac3.chr7              I 515 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958   2 +  61074082 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e macFas5.chr7               65345595 1383 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=810089.000000
s hg38.chr15_KI270850v1_alt    227265 1108 +    430880 TCGCTTCACTTTTACCCTGACACGTATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCAACTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTGTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTACTATATTAACTCAAATACCACTCTCTGTGTAGGTATTTTGTCATATGTTTAAGAAAAAGCTAAAGAGAATGGAAATCctatgacaataactatgacaataactatgacaaGTCTTTCTTCAAAGTGCATGCAGTCTTTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTACCTCATTCAGTATAAGGCAGCCTTTAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCAGCAGGAACATAGAATTTTAAAATGTGACTTC-AACTGAATAAATTTGAATTTCTGTAGGGAGTAAAGAATCAAAACACCTATTTAAAGACTGCAAAATATGATAATTATTTTTAAAGTAATTGATTAAACCTGGTAGGTTTTCCCAAAATGAAAAACAATCAGTTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAACCCTATCCATAATAGA--TTCTCTAAAACTTTATCTTAC--AGTCACTTTCAA-----ATAACTATTCAAAAATGTAACTGCTATATTAACGTCTTAAAATAATTTAAAACATTTTAAAATATGAATACTGTAGTTTAAAACAAAGAATCTAGGGGAAGGAAAAGTAGACaaagaaatgccaattccagtccaaagctgtatttgccaagttttcttagaatgacttttaccgatttatgaattcttatacacagaatgcataatggaaatact----gatttttgtctaaagtggcattattgactgctgctgtgatG--CTACTATAATGTAATACATTATTAAATTGTTTCAAGGTGCTG-TTTTGCCTAAAAATTTTGTGTGTCTTGAAAACTATAGTACT--GGGTATTGAGACTCTGCAAATTCTCGGCATGCTTGGCATGAGGTAATCGGTTTTTATTCTTACAAAATTGTAACTATGTAAGTGTGTTTATTAAAAGAACACAAACTAAAAA
s ponAbe2.chr15              80075098 1084 +  99152023 TCGCTTCACTTTTACTCTGACACATATAAATGACTAGGAATGACCTTCAGATAGCATTTAGCATCTGTAATCAATCTGACAATAATGTGTTCATCAGGTACCTGTGGATTAAATCACATACTGGCATATTTCAGCTGCATGTCAATCTGAAAAATAAATGTACTATATTAATTCAAATACCACTCTTTGTGTAGGTGTTTTGTCATATGTTTAAGAAAAAGCTAAAGAGAATGGAAATCCTATGACAATAACT----------------TAAGTCTTTCTTCAAAGTGCATGCAGTCTTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTTAACATAAGGCAGCTTTCAGTTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCAGCAGAAACATAGAATTTTAAAATATGACTTC-AACTAAATAAATTTGAATTTCTCTAGGGAGTAAAGAATCAAAACACCTATTTAAAGACTGCAATATGTGATAATTAGTTTTAAAGTAATTGATTAAACCTGATAGGTTTTCCCGAAATGAAAAA----CAGTTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAGTCAACCCTATCCATAATAGA--TTCTCTAAAACTTTATCTTAC--AGTCACTTTCAA-----ATAACTATTCAAAAATGTAACTGCTGTATTAGTGACttaaaataatttaaaacattttaaaatatGAATACTGTAGTTTAAAACAAAGAATCTAGGGGAAGGAAAAGTAGACAAAGAAATGCCAATTCCAGTCCAAAGTTTTATTTGCCAAGTTTTCTTAGAATAACTTTTACTGATTTATGAATTCTTATACACAGAATGTATAATGGAAATATT----GATTTTTGTCTAAAGTGGCATTATTGACTGCTTCTGTGATG--CTACTGTAATGTAATAAATTATTAAATTGTTTCAAGGTGCTG-TTTTGCCTAAAAATTTTGTGTGTCTTCAAAACTATAGTATTAAAGGTATTGAGACTGTGCAAATGCTGGGCATGCTTGGCATGAGGGAATCGGTTTTTATTCTTACAGAATTGTAACT------GTGTGTTTATTAAAAGAACACAAACTAAAAA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102180145 1071 + 121039945 TCACTTCACTTTTACCCTGACACATATAAATGACTAGGAATGACCTTCAGATAGCCTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACGGGCATATTTAAGCTCAATGTCAGTCTGAA----AAATGTACCATATTAACTGAAATACCACTCTTTGTGTAGGTATTTTGTCATATGTTTAA-AAAAAGCTAAAGAGAACGGAAATCGTGTGACAATAACT----------------TAAGTCTTTCTTCAAAGTGCATGCAGTCTTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTAAAAGGCAGCTTTCAATTTGCTTCGAAGGCAACATTAGAAGGTTAGAGATCATCAGAAAC--AGAATTTTAAAATGTGAGTTT-AACTGAATAAATGTGAATTTCTGTAGGAAGTAAAGAATCAAAGCACCTATCTAAAGACTGCAATATAGGATAATTATTTTTAAAGTATTTGATTAAACCTGATAGGTTTTCTCGAAATGAAAAA-AATCAGTTCTAAAACCAAAGGTAATTTTTTGAAAATGTGAAAATGTAAATCAGCCCTATCCATAATATAATTTCTCTAAAACTTTATCTT----AGTCATTTTAAAATAATATAACCATTCAAAAATGTAACTGCTATCTTCATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTGTAGTTTAAAAGAAAGAAACCAGGGGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCTATTTATGAATTCTTACAAACAGAATGTATAATGGAAATACT----GACTTTTGCCTAAAGTGGCATTGTTGACTG---CTGTGATG--TTACTGTAATGTAATAAATTATTAAATTGTTGCAAAGTGCTGTTTTTGCCTTAAAATTTTGTGTGTCGTGAAAACTATAGTATT--AAATACT-ATAGCGTGCAAATAATGGGCACGCTTGGCATGAGAGAATC--TTTTTATTTTTACAAAATTGCAACTATAT--AAGTGTTTATTAAAAGAACAA----------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              108569802 1103 - 170124641 TCACTTCACTTTTACCCTGACACATATAAATGACTAGGAATGACCTTCAGATCGCATTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGGACCTATGGATTAAATCACATACTGGCATATTTAAGCTGAATATCAGCCTGGAAAATAAATGTACTATATTAACTGAAATACCACTCTTTGTGTAGGTATTTTGTCATATGTTTAAGACAAAGCTAAAAAGAATGGAAATCATATCACAATAACT----------------TAAGTCTTTCTTCAAAGTGCATGCGGTCTTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCTTCATTCAGTATAAGGCAGCTTTCAGTTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCATCAGAAATACATAATTTTAAAATGTGAGTTC-AACTGAATAAATTTTAATTTCTGTAGGAAATAAAGAATCAAAATACCTGTTAAAAGATTGCAATATATGATAATTATTTTTAAAGTATCTGGCTAAACCTGATAGATTTTCTGGAAATGAATAA-AATCAGTTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATATAAATCAGCCCTATCCATAATAGT--TTCTCCAAAACTTTATCTTACAGAGTTACTTTAAAATAATATAACTATTCAAAAATGTAACTGCTATGTTAATGTTTTGAAATAAGTTAAAACATTTTAAAATATGAATACTGTTGTTTAAAACAAAGAAACTGGGGGAAGGAAAAGtagaga-aataatgccaattccagcccaaagctttatttgccaagttttcttagaatgaattttaccaatttatgaattcttgtaaacagaatgtataatggaaatactgaaagacttttgtctaaagtggcATTATTGACTG---CTATCATGATATACTGTAATGTAATAAATTATGAAATTGTTGCAAAGTGTTGTTTTTGCCTTAAAATTTTGTGTGTCTTGAAAACTATAGCATTAAAGGTATTGAGACTGTGCAAATGCTGAGCACACTTGGCATGAGATCATCGGTTTTTATTTTTACAAAATTGTAACTATCCAAGTGTATTTATTAAAAGAACACAAACTGAAAA
i rheMac3.chr7              C 0 N 0
s macFas5.chr7               65346978 1086 + 171882078 TCACTTCACTTTTA-CCTGACACATATAAATGACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGTAACCTATCTGGCAATAATGTGTTCATCAGGGACCTCTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTGCTATATTACCTGAAATACCACTCTTTGTGTAGGAATTTTGTCATATGTTTAAGAAAAAGCTAAAAAGAATGGAAATCCTGTGACAATAACT----------------TAAGTCTTTCTTCAAAGTGCATGCAGTCGTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCAGCAGAA--ACAGAATTTTAAAATGTGAGTTCAAACTGAATAAATGTGAATTTCTGTAGGAAGTAAAGAATCAAAATATCAATTTAAAGACTGCAATATATCATAATTATTTTTAAACTATTTGATTAAACCTGATAGGTTTCCCTGAAATGAAAAA-AATCAGTTCTAAAACCAAAGCTGAGTTTTATACAACATGAAAATGTAAATCAGCCCTATCCATAATACT--TTCTCTAAAACTTTATCTTAC--AGTCACTTTCAA-----ATAACTATTCAAAAACATAACTGCTA---TAATATCTTGAAATAAGTTAAAACATTTTAAAATATGAACACTGTAGTGTAAAACCAAGAATCTAGGGGAAGGAAAAGTAGAGACagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaacttacgatttcttgtaaacagaatgtataatggaaatact----gacttttgtctaaagtggcATTATTGACTT---CTGTGATG--CTACTATAATGTAATAAATTATGAAATTGTTGCAAGGTGCTGTTTTTGCCTTAAATTTTTGTGTGTCTTGAAAACTATAGTATTAAAGGTATTGAGACTGTGCAAATGTTGGGCACGCTTGTCATGAGATAATCGGTTTTTATTCTCACAAAATTGTAACTATGTAAGTGTGTTTATTAAAAGAACATAAACTAAAAA
i macFas5.chr7              I 1383 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958    2 +  61074082 I
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=52222.000000
s hg38.chr15_KI270850v1_alt    228373 191 +    430880 AGTTAACAGGAATT----AAAGTTGTGGGATGAAAAAGTTACAGGATAAAAAAATACTGTGGAAAAGTGGC-AAAAAAAAGTTGTGGAAAAAAAGTAAAA--AAAAACTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAATTAGTTACAGGATTTAAAAAAA-GTCATGGGATAAAAATAAAAATAAATAAAAGCA
s ponAbe2.chr15              80076182 197 +  99152023 AG-TGACAGGAATTAAAAAAAGTTGTGGGACGAAAAAGTTACGGGAT-AAAAAATACTGTGGAAAAGTTGTGGGAAAAAAATTGTGGAAAACAAGTAAAAAGAAAAAGTTTTATGAAAAGTTTTTTTAAAAAGTTCTGAAAAAGAAGTTACGGGATTTAAAAAAACATCAGGGGataaaaataaaaataaataaaaGCA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102181216 159 + 121039945 ------------------ACAGTTATGGGATGAAAGAGTTATGGGAT-AAAAAA---TGTGGAAAAGTG-------------TGT-CAAAAAAAGTAGA---AAAAAGTTGTATGAAAAGTTA-TTTAAAAAGTTATGAAAAAGAAGTTATGGGATTAAAAAAAATGTCACGGGATATAAATAAAAATAAATAAAAGCA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65348064 176 + 171882078 AG-TTACAGGAATTA---AAAGTTGTGGGATGGAAAAGTTATGGGAT-AAAAAATATGGTGGAAAAATTGTGGCAAAAA----GTCCAAAAAAAGTAAAAA-AAAAAGTTGCCTGAAAAGTTTTTTTAAAAAGTTATGAGGAAGAAGTTATGGG------AAAAA-GTCATGGG------ATAAAAATAAATAAAAGCA
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958   2 +  61074082 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=493037.000000
s hg38.chr15_KI270850v1_alt    228564  864 +    430880 GGCCCCTGTCAGCATAAGCCTGGAGAAGTGGGTCTGGAGTCTTCACCCCCACCATGTCCCTACAACC--------CCTCCCCAGTCA-----CCCCTTTACCATTAGGGTAGCAAGACAAGACCCTTG-------------------TCTAATGGAGGGAGACAAA------CAGACCCTTTACCACCTTGACCAAGGCTGAGTCCTTACATTTCTGGATGATGATGTTTGTTATTT----------AAGAGCCAGAGG---------------------TTGGTGGAGTTGGTTTGTTTGGAGGAGG------TCTGATGGCCTTCTTACTCTCACCAAAGCAACTTTTCCCTCAGGGGGGCTCC--CATCTTCTTACTCAGAG-------------------------------------------AGGCAG------CTGAGGC---GGGACAG-TGGAGTTAACTGTAGACCAGGCCAGGGCACAGGCTGCT-GGGGGTGGCCC-CCCTTCCCCCGTGTACATACTGTAGCTGTGTAACATTCTG----------------------------TATCGTACCTAGCGGAGGTTGCAGCTGGCATATGAGGAAGAGGTTCTTATAATTATTCGCGGCTG-GGAAACTTATTTATTGCTAGCATAGGAGCGAGGAAGGAGGCGGGGATGGGGTCATGGCTGCC-TGGTGA--TGGGACTCC------------TGttttttgttttttgttttttgcttttgattttGGAATAAATGGATTTAGCCATACTGCTCGGCCTGTTATGTTCCCATTTCCC-TCACTG-------GGTCCTGCAGTTTGTCC------CACTGAATGAGG------------------------------------------AGCCCCAGAGTGTCTCAGCATGTCCAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTTATGGGGACTGCCATG---GCGCCTACAGAGTACACTCTGGCCCTGACAGCCAACTGGTTGAGAAGCCTGATCTAGCTGTGG--CAGGGAAGACAGATA
s ponAbe2.chr15              80076379  876 +  99152023 GGCCCCTGTCAGCATAAGCCTGGAGAAGTGGGTCTGGATTCTTCACCCCCACCATGTCCCTACAACC--------CCTTCCCAGTCA-----CCCCTTTACCATTAGGGTAGCAAGACAAGACCCCTG-------------------TCTAATGGAGGGAGACAAA------CAGACCCTCTACCACCTTGAGCAAGGCTGAGTCCTTACATTTCTGGATGATGATGTTTGTTATTT----------CAGAGCCAGAGG---------------------TTGGTGGAGTTGGTTGGTTTGGAGGAGG------TCTGACGGCCTCCTTAGTCTCACCAAAGCAACTTTTCCCTCAGGGGGGCTCC--CATCTTCTTACTCAGAG-------------------------------------------AGGCAG------CTGAGGC---GGGACAG-TGGAGTTAACTGTAGACCAGGCAAGGGCACAGACTGCT-GGGGGTGGCCC-CCCTTCCCCCGTGTACATACTGTATCTGTGTAACATTCTG----------------------------TATCGTATCTGGCGTAGGTTGCAGCTGGCATATGAGGAAGAGGTTCTTATAATTATTTGCGGCTG-GGAAACTTATTTATTGCTAGCATAGGAGCGAGGAAGGAGGCGGGGATGGGGTCATGGCTCCC-TGGTGA--TGGGACTCCtgtttttgtttttgttttttttttttttttttttgcttttgcttttgGAATAAATGGATTTAGCCATACTGCTCGGCCTGGTATGTTCCCGTTTCCC-TCACTG-------GGCCCTGCAGTTTGTCC------CACTGAACGAGG------------------------------------------AGCCCCAGAGTGTCTCAGCATGTCTAG----CTGGGCTGTGGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGTCATG---GTGTCTACAGAGTACAGTCTGGCCCTGACAGCCAACAAGTTGAGAAGCCTGATGTAGCGGTGG--CCGGGAAGACAGATA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102181375  879 + 121039945 GGCCCCTGTCTGCATAAGCCTGGAGAAGTGGGTCTGGGGTCTCCGCCCCCACCATGTCCCTACAACC--------CCTTCCCAGTCACCATTCCCCTTTACCATTAGGGTAGCAAGACAAGACCCCTG-------------------TCTAATGGGGGGAG----A------CAGACCCTTTGCCACGTTGACCAGGGCTGAGTCCTTAAATTTCTGGACGATGACGCCTATTATTT----------AAGAGCCAGAGG---------------------TTGGTGGAGTTGGTTTGTTTGGAGGAGG------TCTGATGGCCTCCTTACTCTCACCAAAGCAACTTTTCCCTCAGGGAGGCTCC--CATCTTCTTATTCAGAA-------------------------------------------AGGCAG------CTGAGGC---GGGACAG-TGGGGCTGAC---AGACCAGGTGAGGGCACGGGCTGCT-GGGGTGACCCC-CGCTTCCCCAGTGTATATATTGTATCTGCGTAACATTTTGTGTATTCTGGGGGGTGGGGCCGCCCCTCTATCGTACCTAGTGGAGGTTGGAGCTGGCATATGGGGAGGAGGTTCTAATAATTATTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACAGAGGAAGGAGGTGGAGATGGGGTCCTGGCTCCCTTGGTGA--TGCGACTCC------------TGTT------------TATTTTGCTTCTGATTTTGGAATAAATGGATTTAGCCATACTGCTCAGCCTGGTGTGTTCCCGTTTCCT-TCACTG-------GGTCCTGGAGTTTGTCC------CACTGAATGAGG------------------------------------------AGCCCCAGAGTGTCCGAGCATGTCCAG----CTGGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGACGTCACGGGGACTGCCATG---GCACCTATGGGGCACAGTCCGGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCAGTGG--CCGGGAAGACAGATA
i nomLeu3.chr6              C 0 I 12312
s macFas5.chr7               65348240  854 + 171882078 GGCCCCTGTCAGCATGAGCCTGGAGAAGTGAGTCTGGAGTCTTCACCCCCACCATGTCCCTACAACG--------CCTTCCCAGTCA-----CCTTTTTACCATTA-GGTAGCAACACAAGACCCCTG-------------------TCTAATGAAGAGAGAAAAA------CAGACCCTTTACCACCTTGACCAAGGCTGAGTCCTTACATTTCTGGATGATGATGTTTGTTATTT----------AAGAGCCAGAGG---------------------TTGATGGAGTTGGTTTCTTTGGAGGAGG------TGCGATGGCCTCCTTACTCTCACCGAGGCAACTTTTCTCAC-GGGGTGCTCC--CATCATCTTACTCAGAG-------------------------------------------AGGCAT------CTGAGGC---GGGACAG-TGGAGCTAACTGTAGACCAGGCGAGGGCACGGGCTGCT-AGGGGTGACCCGCCCTTCCCCCATGTACATACTGTATCTGTGTAACATTCTGTATG------------------------TATCGTACCTAGCGGAGGTTGCAGCTGGCATATGAAGAAGAGGTTCTGATAGTTATTTGCAGCTG-GGAAACTTATTTATTGCTAGCATAGGAGCGAGGAAGGAGGCGGGGATGGAGTCATGGCTCCC-TGGTGA--TGGGACTCC------------TGTT------------TTCTTTGCTTTTTATTTGGGAATAAATGGATTTAGCTATACTGCTCAGCCTGGTATGTTCCCGTTTCCC-TCAGTG-------GGTCCTGCAGTTTGTCC------CATTGAAAGAGG------------------------------------------AGCCCCAGAGGGTCTGAGCATGCCCAG----TTGGGCTGTTGGGAATCTTCCAGGCCTGTTGTCTGGATGCTGCCTGGTGACACCTGGTGGATTTCACGGGGACTGCCATG---GTGCCTAATGGGCACAGTGCAGCCCTGACGGCCAACAGGTTCAGAAGACTGATCTAGCTGTGG--CCGGGAAGACA-ACA
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55250960 1044 +  61074082 GACACCAGCAAGCA-AAACCTGGAGAAGTGGGGCCGGGGGCTCTGCTCCCACCCTGTCCCTGCCACCCTATCATTCCTTCCCAGTTA-----CCCTTTTATCCCTAAACTAGCAAGATAAGACCCCTGAGAGGGGTGTGAAAAGCCTCCTAATTGGGGGAGACAAATAGGTGCAGACCTCTTGCCACCTTGGCAAGGGCTGTGTCTTTA----TCTGGAC-----TACTCATCGTTCCAGAAAAACAAAGAGCCAGAGGCTCAATAAAAACATAGTTTATTTAGAGGGCTCCCTTTCTTGGGGGGCAGGGGCTCCCTGGTGGCCTCCTCACCCCCACC-AAGCAG----TCCTTCAGAGGGGCTCAGGCATCCTC-TATTCAGAGGCACTTTGGGGAACAAGTGCTCCCCCTGTCCAGCTCAATGACTGGGCAGCACTCTCCCAGGCCTTAGGACAGTTGGGGCTAAC-CCAGGCCAGGCAAAGGCATAAGCTGGTGGGGGGGGGGCC-TCCCTCCCCAGTGTATATACTGTACCTGTGTAACATTTTGTATATTCTGGGGATAGGGCAGCCCCCTGTATCATA----GCAGAGGTTGGAACTGGCAAATGGGGAGGAAGTTCTATTAAATATTTGGGGATGAGGAAACTTATTTATTGATAGCATAGGACAGAGGAAGGAGGCGGGGACGGGGTTCCG---CCC-AGGTGACTCACAACTTC------------TGTT-----------------TGCTTTTTATTTCGGAATAAATGGATTTAGCCATACTGTTTAGCCTTGTGTGTGCCTGTTTCCAGTCACTGGCCCCTAGGTCCTGGAGTCTGCACTGTGGGCATTGAACAGGGAGCAGATCCTGCCAGCAGAGGGCAGACTTCTGGATTGTGCAAAGCCCCAGTGTCTCTGAGCCTGCCTAGCAAACAGAGCTGTTGGAGATGATCCAGGCCTGTCACCCCCATGCTGCTTGGGGAAGCCTGGGGGATCCCAGGGCCCCTGCCATGCATGGGACTCTAAGGAGCACTCCTGTCTTAATGGTCCAAAGGCTCAG-AGCCTGATCTAATCCTGGGTTGGGGAAAGCAGGGT
i canFam3.chr9              I 2 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=248487.000000
s hg38.chr15_KI270850v1_alt    229428 432 +    430880 -CCAGTGCCCAAGGGCACTGACTTCCATCCACCCCACGTGTCTT-CCATTCCGTCCCCCTGCCTCCCTCTCCTGTCTGCACCGGGTGGCCTGTCTGTCCCTCCA---------GAGTGCCGGCTGCCCCGCAGGTTCCCTCCAGGCTGAGTTCAGGGCCCTG-CCCCTAGTGGCCAGAGCTGGCTTCACAGGGTAAGAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGAAAAGGGTGTGAC--CTTTTCACTGCTCCCAACAACACCCTAAAAATGGCTTGGCCTTTTCCA--------------------------------TCCCCTGAGCTCCATAGAGAACAC-AGCCAGCAGAGGACACATTCTCTGTCATCCAGAAATGGGTT----TCTCAGTCAAGGGACAGCAGGACTGGT---AGAGACTGTCAGGCCACACAGCTGCCTGCACAGCACCGCC--ATGCTTGGCCA
s ponAbe2.chr15              80077255 431 +  99152023 -CCAGCGCCCAAGGGCACTGACTTCCATCCACCCCAGGTGTCTT-CCGTTCTGTCCCCCTGCCTCCCTCTCCTGTCTGCACTGGGTGGCCTGTCTGTCCCTCCA---------GAGTGCCAGCTGCCCCGCAGGCTCCCTCGAGGCTGAGTTCATGGCCCTGTCCCCTAGTGGCCAGAGCTGGCTTCATAGGATATGAGCCAGCTAAGCTCCAGGGACTTCCCAGGAAAAGTGTCCCTTGAAAAGGGTGTGAC--CTTTTCACCGTTGCCAGC-ACACCCTAAAAATGGCTTGGCCTTTTCCC--------------------------------T-CCCTGAGCTCCATAGAGAACAC-AGCCAGCAGAGGACACATTCTCTGTCATCCAGAAATGGGTT----TCTCAGCTGAGGGACAGCAGGACTGGT---AGAGACTGTCAGGCCACATGGCCGCCTGCACAGCACTGCC--ATGCTTGGCCA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18833421 415 - 121039945 -CCAGCGCCCAAGGGCACTGACTTCCATCCACCCCAGGTGTCTT-CCGTTCTGTCCCCCTGCCTCCCTC------------------GCCTGTCTGTCCCTCCA---------GAGTGCTGGCTGCCCCACAGGCTCCCTCCAGGCTGAGTTCACGGCCCTGTCCCCTAGTGGCCAGAGCCAGCTTCACAGGATAAGAGCCAGCTAAGCTCTAGGGACTTTCCAGGAAAAGTGTCCCTTGAAAAGGGTATGAC--CTTTTCACCACTCCCAACAGCACCCTAAAAATGGCTTGGCCTTTTGCC--------------------------------TCCCGAGAGCTCCATAGAGAACAC-AGCCAGCAGAGGACACATTCTCTGTCATCCAGAAATGGGTT----TTTCAGCTGAGGGACAGCAGGACTGGT---AGAGACTGTCAGGCCACACAGCTGCCTGCACAGCGCTGCC--ATGCTTGGCCA
i nomLeu3.chr6              n 12312 I 230
s macFas5.chr7               65349094 435 + 171882078 -CCAGCACCCGAGGGCACTGACTTTCACCCACCCCAGGTGTCTT-CCATTCCGTCCCCCTGCCTCCCTCTCCTGTCTGCACCGGGTGGCCTGTCTGTCCCTCCA---------GAGTGCAGGCTGCCCCGCAGGCTCCCTCCAGGTTGAGTTCACGGCCCTGCCCCCTAGTGGCCAGATCCGGCTTCACAGGATAAGAACCCGCTAAGCTCCAGGGACTTTCTAGGAAAAGTGTCCCTTGGAAAGGGTGTGAC--CTTTTCACCGCTCCCAAAAGCACCCTAAAAATGGCTTGGACTTTTCCC--------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACATTCTCTGTCATCCAGAAATGGGTTGGAGTCTCAGCCGAGGGACAGCAGGACTGG-----AAGACTGTCAGTCCACACAGCTGCCTGCACAGCACCCCC--ATGCTTGCCCA
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55252004 449 +  61074082 CCTCGCA-CCAAGAGTGCTGCCTT----CCAGTTCAGGCACTTTGCCCTCTCATCACCCTGGCCCTCT---------------GGTGGCCTGT-TGTCCTTCCCCTGCACAGTGCGTGCCAGGGGCCCCCAATCCTCCTTCTGGGCTGAGTTGGTGCCCCTGCCCCCTAGTGGGCAGAGCAGGCTTCCCAGAAAGATAACCCATGAATCCGCAGGTGCTTTCC-----CAGTAGGCCCTGGAAAGGACAGGACCTCTCTTCGCCACTCATCCCAACACCCTAGCAATGGTGGGGCCCTTCCCCACCGCTTCATCCCAAGGTTGAAGCCTTCCCCTTCCCCTGAACTCCACA-AAAACACAAGCCAGCAGAGGACA-GTCTCCCATCGTCCAGAAATGGGTTTTATTCTCAGCCAAGAGACAGCAAGACTGGTGGCAGAG-------GACCACACAGCTGCCAGTACAGCGCCCCCCTGTGCTCG----
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=135923.000000
s hg38.chr15_KI270850v1_alt    229860 219 +    430880 GAAGGGCGGGAGGGATGGCGGGGGCTGGCTGTCCACAGGCCGCGCATGTCCCGGAAGCTCACTGGAGGTGGTGCACTTTGGAG-----GGGCGATGTCAGGA-GACAGCTTCCTCTT---GCTGGTCTACAAGACTCCACAAGCACAGCACGGGGACTGATTCCCAGTGCTAGAGGTGAGGCAGTTGGCCACgtgtatatatgtatatgtgtgtgtgtgtgtgtgtgt
s ponAbe2.chr15              80077686 219 +  99152023 GAAGGGCGGGAGGGATGGCGGGGGCTGGCTGTCCACAGGCCGCGCATGTCACGGAAGCTCACTGGAGGTGGTGCACTTTGGAG-----GGGCGATGTCCGGA-GACAGCTTCCTCTT---GCTGGGCTACAAGACTCCACAAGCACAGCATGGGGACTGATTCCCAGTTCTAGAGGCGAGGCAGTCGGCCACGTGTAtatatgtatatgtgtgtgtgtgtgtatatgt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102194566 216 + 121039945 GGGGGGTGGGAGGGATGGC---GTCTGGCTGTCCACAGGCTGGGCATGACAGGGAGGCTCACTGGAAGTGGCGCACTTTGGAG-----GGGCAATGTCAGGG-GAGAGCTTCCTCTT---GTTGGGCCACAAGACTCCACAAGGACAGCACAGTGACTGATTCCCAGTGCTAGAGGTGAGGCAATCGGCCCtgtgtaggtgtatgtgtgtgtgtgtgtgtgtatatat
i nomLeu3.chr6              I 12312 I 5702
s macFas5.chr7               65349529 223 + 171882078 -GGAGGCGGGAAGGATGGCGGGGGCTGGCTGTCCACAGGCCGGGCATGACAGGGAGGCTCCCTGGAGGTGGTGCCCTTTCGAGGGGCAGGGCAATGTCAGGA-GACAGCTTCCTCTT---GTTGGGCCACAAGACTCCACAAGGACAGCACGAGGACTGATTCCCAGTGCTAGAGGCCAGGCAGTTGGCCACgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgt
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55252453 212 +  61074082 --AGCGGGGGAGGGACGGAAGAG--TGGCCGTCCACAGGCCGGGCATGACAGGGAGGCTCATCGGAGGTGGCACACTTTGGAG----AGGGGGATGTCAGGGTGACAGTGTTCCCCTGTAGTTGGACCACAAGACTCCTCAAGGACAGCGTGGTGATTGGTTCCCAACACTAGAGGCGAGGCTGTGGCAGCCATATAtgtatgtgtgtgtgtgtgtgtgt--------
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=1213.000000
s hg38.chr15_KI270850v1_alt    230079 3 +    430880 gtg
s ponAbe2.chr15              80077905 3 +  99152023 gta
i ponAbe2.chr15             C 0 I 7
s nomLeu3.chr6               18834066 3 - 121039945 gta
i nomLeu3.chr6              I 230 C 0
s macFas5.chr7               65349752 3 + 171882078 gtg
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55252665 0 +  61074082 C
e chlSab2.chr29              21075958 1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=135.000000
s hg38.chr15_KI270850v1_alt    230082 5 +    430880 AGAGA
s nomLeu3.chr6               18834069 5 - 121039945 tgtgt
i nomLeu3.chr6              C 0 I 8
s macFas5.chr7               65349755 5 + 171882078 tgtgt
i macFas5.chr7              C 0 I 6
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55252665 0 +  61074082 C
e chlSab2.chr29              21075958 1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e ponAbe2.chr15              80077908 7 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=646221.000000
s hg38.chr15_KI270850v1_alt    230087 949 +    430880 GAGAATTTATAGCTATTTATAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAG-TTTCAGCAATGGTCACACCTGGACGTGTCAGCTCACCGCTACAACAGAC-TAAGTCACAGAAGAAGGGGGCTGGCTTTGGAGCTGGGGGAGCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGAGAA---GAGGGATCTGTTTAGAGGTCGAAGTGGGGCCTGGGGCTCTCAGGATGGGATGGACTTGCCTGACCCGATCAGCTGGCAGTTGGAGAGAAAGCAGAGAGAAAACGGGTTAGAGAAAAGCCAGAGCTGGTGAGGCAAGTGCAGAGTATGGGTGCGCTGCAGCAGCTGT-GGAGGGCCGGGGAGGGGAGGGCGTAGGTGTGGGCAT-GGCAAGGTTCCTGGAAAagaggggctggaagggaaagg--ggaggga---gatggagggagaagccagagCTT-CATAGGTAGTGCCTGGGGACTGCGGCGGCCCTCCCTACCCCACACACGCTGGCCTGTCTCATGGAACCCAGGCAATCCACCCATCCACCCACAG-TTCAGACCAATGCCAGCTCCCTCGGGCTTCCCTCTTCTGTGGTCCCCATGTCTTCCAACCCACTGGCCCAGGGCCACCTCTTGCTTGGAGA-------------GCCCCATCCAACAGCCACCAGACCTGAT-----------AGAGAAGGAACACTGATTGAACCAAAATGGTGGAGCTATAA-GGGATGGCTGGCTGGAGTGAATGCC-AGAGGCCCCTCTGGGCCATCAGAAAGCCCAGGGTCCTCTG-AGGGACCCTGGGGAAGGCAGGGAGGGCAGGT-AGCCGGATGCCATTGGCCATAGACTTCTAATTCTAACAGGGGAGCCTCAACTGGTTGGC------GGGGGGCTGCAGGTTACATAGGTGAGGCTGGGCCCTTCCTGCT-GGGAAAAGCAGAAGAGGGAGA
s ponAbe2.chr15              80077915 952 +  99152023 gGGAATTTATAGCTATTTATAGAACAGGGCAAGGGC-ATACCACGGAGGGGGCACAAGTTTTCAGCAACTGTCACACCTGGACGTGTCAGCTCACCGCTACAACAGACTTAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCTGGGGGAGCCACTGTCAAGT--CAGGACACCCGCTCAGGCAGGCTTGGAAAGGGAGGTCTCTGAGAAGAGGAGGGATCTGTTTAGAGGTCGAAGGGAGGCCTGGGGCTCTCAGGACAGGATGGACTTGCCTGACCGGATCAGCTGGCAGTTGGAGAGAAAGCAGAGAGAAAACGGGTTAGAGAAAAGCCAGAGCTGGTGAGGCAAGTGCAGAGGATGGGTGCGCTGCAGCAGCTGTGGGAGGGCCGGGGAGGGGAGGGTGTAGGTGTGGGCAT-GGCAAGATTCTCGGAAAAGAGGTGCTGGAAGGGAAAGG--GGAGGAA---GTTGGAGGGAGAAGCCAGAGCTT-CATAGGTAGTGCCTGGGGGCTGCGGCGGCCCTCCCCACCCCACACACGCTGGCCTCTCTCATGGCACCCAGGCAGTCCACCCATCCACCCACAG-TTCAGACCAATGCCAGCCCCCTCGGGCTTCCCTCTTCACTGGTCACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCTCTTGCTTGGAGC-------------GGCCCATCCAACAGCCACCAGACCTGGT-----------AGAGAAGGAACACTGCCTGAACCAAAATGGTGGAGCTATAA-GGGATAGATGAC--GAGTGAGTGCC-AGAGGCCCCTCTGGGTGGTCCGAAATCCCAGGGTCCTCTGAAGGGACCCTGGGGAAGGCAGGGAGGGCAGGT-AGCTGGATGCCACTGGCCATAGACTTTTAAGTCTAAGAGGGGAGCCTCAACTGGTTGGC------GGGGGGCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTCCTGCT-GGGAAAAGCACAAGAGGGAGA
i ponAbe2.chr15             I 7 C 0
s nomLeu3.chr6               18834082 957 - 121039945 gagaatttatagctatttataGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGAC-TAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCTGGGGGAGCCACTGTCAAGTCACAGGACACCTGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGAGAAGAGGAGGGATCTGTTTAGAGGTCGAAGGGGAGCCTGGGGCTCTCAGGATGGGATGGACTTGCCTGACCCGATCAGCTGGCAGTTGGAGAGAAAGCAGAGAGAAAACGGGTTAGAGAAAAGCCAGAGCTGGTGAGGCAAGTGCAGAGTATGGGTGCGCTGCAGCAGCTGTGGGAGGGCCGGGGAGGGGAGGTCATAGGTGTGGGCAT-GGCAAGATTCCTAGAAAA---GGGCTGGAAGGGAAAGG--GGAGGAA---GATGGAGGGAGAAGCCAGAGCTT-CACAGGTAGTGCCTGGGGGGCGTGACGGCCCTCCCCACCCCACACACGCTGGCCTCTCTCATGGCACCCAGGCAATCCACCCATCCACCCACAG-TTCAGACCAATGCCAGCCCCCTCGGACTTCGCTCTTCTCTGGTCACCTTGTCTTCCAACCCACTGGCCCAGGGCCACCTCTTGCTTGGAGA-------------GCCCCACCCAACAGCCACCAGACCTGAT-----------AGAGAAGGAACACTGCTTGAACCAAAATGGTGGAGCTATAA-GGGATGGCTGGCTGGAGTGAGCGCC-AGAGGCCCCTCTGGGTGGTCAGAAAGCCCAGGGTCCTCTG-AGGGACCCTGGGGAAGGCAGGGAGGGCTGGT-AGCCGCATGCCACTGGCCATAGACTTCTAAGTCTAAGAGGGGAGCCTCAACTGGTTGGCGGTGGGGGGGGGCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTCCTGCT-GGGAAAAGCAGAAGAGGGAga
i nomLeu3.chr6              I 8 C 0
s macFas5.chr7               65349766 943 + 171882078 gAGAATTTATAGCTATTTATAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGATGTGGCAGCTCACCACTACAACAGAC-TAAGTCACAGATGAAGGGGGCTGGCTCTGGGGCTGCGGGAGCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGCCTTGGAAAGGGAAATCTCTGAGAAGAGGAGGGATCTGTTCAGAGGTCGAAGGGGGACCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCAATCAGCTGGCA-TTGGAGAGAACGCAGAGAGAAAACAGGTTAGAGAAAAGCCAGAGCTGGTGAGGCAAGTGCAGAGCATGGGTGCACCGTAGCAGCTGCGAGAGGGCCGGGAAGGGGAGAGTGTAAGTGTGGGCAT-GGCAAGGTTCCTGGAAAAGAGAGGCTGGAAGGGAAAGG--GGAGGAA---GATGGAGGGAGAAGCCAGAGCTT-CATAGGAAGTGCCCGGGGGCTGCGGCGGCCCTCCCCACCCCACACACGCTGACCTCTCTCATGGCACCCAGGCAG--------TCCACCCACAG-TTCAGACCAATGCCAGCCCCC-AGGACTTCCCTCTTCCCTGGTCACC--GTCTTCCAACCCACTGGCCCAGGGCCACCTCTTGCTTGGGGA-------------GCCCCACCCAACAGCCACCACTCCTCAT-----------AGAGAAGGAACACTGCTTGAAACAAAATAGTGAAGCTATAAGGGGATGGCTGGCTGGAGTGAGCACC-AGAGGTCCCTCTGGGTGGGCAGAAAGCTCAGGGTCCTCTG-AAGGACCCTGGGGAAGGCTGGGAGGGCAGGT-AGCTGGATGCCACCGGCCATACAGTTATAAGCCCAAAAGGGGAGCCTCAACTGGTAGGC------AGGGGGCTGCAGGTTGCATAGGTGACGCTGGGCCCTTTATGAT-GGGAAAAGCAGAAGAGGGAGA
i macFas5.chr7              I 6 C 0
s canFam3.chr9               55252665 959 +  61074082 ----ATTTATAGTTATTTATAGAATGGGATAGGAGCAATACCACAGA-GGGGCACAAGTTTTCACCAAT-ATCACGCCTGGATGTGTCAGCTCACCACTACAACAGAC-TAAGTCACAGATGAAGGGGGA-GGCTTTGGGGCTG-GGGAGCCACTGTCAAGTCACAGAACAGCCGTCCAGGCAGGCTTGGAAAGGGAGGTCTCCGAGGAATAGAGGGATCTGGTTAGAGGTCGAAGGGGGGCCTGGGGCTCTCAGGACGGGACGGACTTGCCTGACCCGATCGGCTGGCAGTTGGAGAGAAAGCAAAAAGAGAACGGAGAGAAGGAGGAAGAGAACTGGTAAGGCAAGGGCAG---CCAAGCCCGGTGGGGTAGGAGG-GGAGGACAGGG--GGCGAAAACAAAGCTGAGGGTGTGGGCAAGGGTTCTGGAATGGAGGAGAGAGAAAGGGAAGGTAGGAGGAACTGGAGGTGGGTGGGGGCCACAGCTTCCAGGGGTCTTGGATGGAGGCCGGGGCGGCCCTCCCTCTGCCACGCACGCCGGTCTCTCATACACCA-CCAGGCAG--------TGCACCCACAGCTCCAGGCACATGCTCGGCCCCTCTGCCTTCCCTCTTTTCTGGCCCCCATGTCTTCCAATGTACTGGCCCAGGACCAGCCCTAGTCTCGGAATGTGGGTCCTGATGCCCCATGCCACAGCCACCAGTCCTCGTGGAGAGAGACAGGAGAAAGAACAGTGTTTGAACCAGGAGGGCAAAGCTAAAA------GGATGGCTGGAGGGGGCACCTGGAGGCCCCTCTGGGTGGGCAGAAAGCCCGGAGTCCTCAGAAGGGACCCTGGGG-AGGCAGGGAGGTCAGGCAAGCCGGATGCCAGCGGCCACAGGCTTATAAGTCTAAGAGGGGAGCCTCAGCTGGC---C------GGGGGACCACAGGTCGCGTAGGTGAGGCTGGGCCCTTCCTGCTGGGGAAAAGCAGAAGAGTGAGA
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=252768.000000
s hg38.chr15_KI270850v1_alt    231036 724 +    430880 CTCCGCGGCAG-----GAAAGGGAAGTGAGCT---------------------CTCTAGGTGGAGCTCAG--------------CTGGGCCAGCA-GCACTA--------TTGGCTGAATAGCACAGGCGACCCCTAGAAGCAACAGGCCAAGGTGCGTGAGCCTGCTGGCCAGC-AGTAGTGCTTCAGCAGGGGCCAGGGACCCTGCCTTCAGTCGCACGCTAGCAGCTATCATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCTTCCATGGCCTATGAAGTGTGTTGTGGGATGACCACGTGTATAGGACTCTCAGGCTTTTA------------------------TCCTAGATCACCACTGGATTGCTGACA-GATAGAGGACGTGGGACCGTGACTATCACCCCTAATCTGCAGTGGATTTGGCTCTTGGCACTCCCAGGCTGGGAGCTGGATA-CCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACGGCG-TGTCCAGGATGATGTGCCCAGGCCTCTGGCCGCCT--GAGTCCAGCCCCCCACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAGCTCTGTGCCCTCTCTGATGGTTCCACA-----------TCTGCCACCTTGGGCATGGAGCCTGTTGTAAGAGC-CCCCAGGCTCAGCCATGGAGACCTTGAGCAGTGGCACTGAGTCCCGTGGCTCACAGGGAGCAAAGTGAGACAACCAGC-AGCA-CAAGGACAGAAAGAGGAAAGAGCAAGTCTGCAGCTCCAGAAGGGAGGGGCAGG-
s ponAbe2.chr15              80078867 736 +  99152023 CTCCGTGGCAG-----GAAAGGGAAGTGAGCT---------------------CTCTAGGCGGAGCTCAG--------------CTGGGCCAGCATGCACTGTGGTCCCCTTGGCTGAATAGCACAGGCGACCCCTAGGAACAACAGGCCAAGGTGCGTGAGCCTGCTGGCCAGC-AGTAGTGCTTCAGCAGGGGCCAGGGACCCTGCCTTCAGTCACACGCTAGCAGCTATGATGGTACCTGGGAGGGAAGGAAGGGGGCTGTGTGTCCGTGCATGGCCTATGAAGTGTGTTGTGGGATGACCGTGTGTATGGGACTCTCAGGCTTTTA------------------------TCCTAGAACACCACTGGATGGCTGACA-GATAGAGGACGTGGGACCCTGACTATCACCCCTAATCTGCAGTGGATTTGGCTCTTGGCAATCCTAGGCTGGGAGCTGGATACCCTGCCCTGGCAGTATGACTCAGACTGCACGACAGGTACGGCA-TGTCCAGGATGATGTTCCTAGGCCTCTAGCTGCCTCAGAGTGCAGCCCCACACACAAGCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAACTCTGTGCCCTCTCTGACGGCTCCACA-----------TCTGCCAGCTTGGGCATGGAGCCTGTTCTAAGAGC-CCCCAGGCTCAGCCATGGAGACCTGGAGCAGTGGCACTGAGTCCTGTGGCTGGCAGGGAGGGAAGCGAGACAGCCAGC-AGCA-CAAGGACAGAAAGAGGAAAGAGCAAGTCTGCAGCTCCAGAAGGAAGGGGCAGG-
i ponAbe2.chr15             C 0 I 10054
s macFas5.chr7               65350709 734 + 171882078 GTCCGTGGCAG-----GACAGGCAGGTGGGCT---------------------CGCTAGGCAGGATTTGG--------------CTGGGCCAGGAGGCACTGTGGTCTCCTTGGATGAATAGCACAGGAGACCCCTAGGAGCAACAGGCCAAGGTGAGTGAGCCTGCTGGTCGGC-GGTAGTGCTTCAGCGGGGGCCAGGGACCCTGTCTTCAGTC-CACACGAGCAGCTATGATGGTACCTGGGAGGGAGGGAACGGGGCTGTGTGTCCTTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACCGTGTGTATGGGACTCTCAGGCTTTTA------------------------TCCTCGATCACCACTGGATTGCTGACA-GTTGGAGGATGTGGGACCCTAACTATCATCCTTAATCTGCAGTGGATTTGGCTCTCAGCACTCCCAGCCTGGGAGCTGGATA-CCTGCCCTGGCAGCATGACCCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTGCCTAGACCTCTGACCGCCTCAGATTCCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCACGAGCTCTGTGTCCTCTCTGATGGCTCCACA-----------TCTGCCAGCTTGGGCATGGAGCCTGTTCTAAGAGC-CCCCAGGCTCAGCCATGGAGACCTGGAGCAGTGACACTGAGTCCCATGGCTCGCAGGGAGAGAAGTGAGACAGCCAGC-AGCA-CAAAGACAGAAAGAGCAAAGAGCAAGTCTGCAGCTCCAGAAGGGAGGGGCAGG-
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55253624 790 +  61074082 GTCAGCGGCAGGGACAGAGTGGCAGGTGGGTTGCTGGGCGCATGTGCGGCCCAACCAGGGTGGGACTCAGAAAAGCTGATTTGCCTAGATTGGTGGACACTGTCGTCCCCTTGGCTGAAAAGTGTAGGTCACCCC-AGGAGCACCAGGCCTAGGCCCGGGAGCCTGAGGGCTGGCTTACGGTGCTTCATCTGGGGCAGAGGACACTGTCGTTTGTAGTGCCATCACAAGCATGACCATACC-AGGAGGGAGAGGAACAGGCTGCGTGATCCTACCTCGCCCGT------------------ACACTGTGGACAGGGCCCTCCAGCTTTCAGAAATCAGCAAACCAGAGCCTTCGCCCCAAATTGCTGCTCAACTGCTGGCACCATAGAGGAGGTGGGGCTGTGAC---CTCCTCTGCCCTATCATGGCCTCGGTTCCCAGCGCTCCTGAGCTGGGAGCTGGCTGCCCTGCCCCGACAGCTTGGCTCAGGTTGGACAATGAGTGTGGCACCCCCCAGGACAAAGTTCCAAG---CCTGGCTGGCT--GAGTTCAGCCCCACGCACAACCCCCTCCAAGGTTCCTGCCTCTACACCATAAACCATGAGCCCTCTGTCCTCTCTGATGGCTCCAGAGAGCACCTGTGTCTGCCAGCTCGGGCGCGGAGCCTGTCCCAAGAGCTCCCCAGGCTCAGCCATGGAGATCTTGAGCAGTGGCACTGAGTCCCGAGGCTCGCTGAGAGGGAGGTGAGAGAGCCAGCTGGCAGCGAGGACAGAAAGAGGAAAGAATAAGTCTGGAGCTGCAGAAGGGAGAGGGAGGG
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e nomLeu3.chr6               18835039   0 - 121039945 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=35233.000000
s hg38.chr15_KI270850v1_alt    231760 179 +    430880 GAGCCTGGCTCTGAGACTCCAGGCATGCCCCCT-GTGTGGAGCTGGGGCAGC------------GGGGCGGGCAGACCATTCATGCAGCAGGCAGTGAGACTTGT----ACCTACCATGGCTGACGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCCCATGCATGGGT
s macFas5.chr7               65351443 178 + 171882078 GAGCCTGGCTCTGAGGTCCCAGGTAGGCCCCCC-ATGTGGGGCTGGGGCAGC------------GGGGCAGGCAGACCTTTCATGCAGCAGGCAGCAAAGCATGT----ACCTACCAAGGCTGACGCTCCTCAGGGAACACCGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCACATGCAT-GGT
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55254414 197 +  61074082 GAGCCTGGCTCTGAGGTCCCAGGTGCGCCCCCCAGTGTGGAGCTGGTGCAGCGGCGGGGGGCGGGGGGCAGACACACTGTTCATGCAGCAGGCAGAGAGGCATGTATGCACCTACCGTGGCTGACGCTCCTCAGGGGTCACTGATAGTGATTCTGAAAGACAGCACGAGATCAACATGGCAGTTCACACGCACAGAC
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e nomLeu3.chr6               18835039   0 - 121039945 C
e ponAbe2.chr15              80079603 10054 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=391092.000000
s hg38.chr15_KI270850v1_alt    231939 1007 +    430880 GGGGCAGGCCT-GGGGGTGGCAG----ACACACGCACATGCCAGATTGTGCACACACATGCTGTGAGGCCCCACGG-CCCGCATGCACACTCTA--ACAGATGCCCACAAACAACACGCATACGTCGCCCTCTCCGCCACCTCCCGGTGCCCAGCACCCTCACCGGCCGGCACGTGCCGCATGGATCTGGGGCGTGCAGCCACACGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCGCACACA-GAGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTGGCGTGCTCAGAGGACCACCCATGCTGCTCA--GGGAGACAGGGCTTGCTCACT-AATGTCCGGCTGTCATTTCTCCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCGTTGAATCCCAACAAGTCATACTTTTTGGACTTTGAAGGTTCTCCACCCTGTGCCCCACCCTCCCCACAGA-----------GCTCTTCCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGTGGCTATCCGCGATGTGACCCACACTACACCTCTGCCCACACTGCAGCTCTTTACCCAGTTACCCTCCAGTTCCTCACCACGTATG-CCTACCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCCAAAGGTTTCGTGTGTGTTAGCAAGACTGGAGTCGGAGCAGGCGTCAAACTTTA--CATCCCATATGTCACACCTCACCATAGATCTGGGTGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGAAGTTAGCAAAGTGCTCCTACAGCCGCAtctgcagtt----------------aacatag---------tatccctatggccactgtctcccttgatccccacagccatcctaggagaaaggcagaa-------cgtcatttgctagaagggatgctgaggctctgggagggaaagggacttgcctaaagccccaGGGTGAAGCAGCATCTCTGGACTCTCAT
s ponAbe2.chr15              80089657 1010 +  99152023 GGGGCAGGCCT-GGGGGTGGGGG----ATACACGCACATGCCAGAGTGTGCACACACATGCTGTGAGGCCCCCCGG-CCCGCATGCACACTCTA--ACACATGCCCACAAACAACACGTATACGCAGCCTTCCCTGCCACCTCCCGGTGCCCAGCACCCTCACCGGCCAGCACGTGCCGCATGGATCTGGGGCGTGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCGCACACA-GAGGCTTTTGCACCAGCTCCCTGCACACTCGTGCCTGGCGTGCTCAGAGGACCACCCATGCTGCTCA--TGGAGACAGGGCTTGCTCACT-GATGTCCAGCCCTCATTTCTCCACCTAAGAGCCTTCCGTGGCTCCCTACTGCCTACAGCATTGAATCCCAACAAGTCATGCTCTTTGGACTTTGAAGGTTCTCCACCCCGTGTCCCACCTTCCCCACAGA-----------GCTCTTCCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGTGGCTGTCCTCGATGTGACCCACACTGCACCTCTGCCCACACTGCAGCTCTTTACCCAGTTACCCTCCAATTCCCGGCCACGTAAG-CCTATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCCAAAGGTTTCGTGTGTGTTAGCAAGACTGGAGTCGGAGCAGGCATCAAACTTTA--CATCCCATATGTCACACCTCACCATAGACCTGGGTGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGCAGTTAGCAAAATGCTCCTACCACCTCACCtgcggtt----------------aacatag---------catccctatggccactgtctcccttgatccccacagccatcctaggagaaaggcagaacat----catcatttgatagaagggatgctgaggttctgggagggaaagggacttgcctaaagccccaGGGTGAAGCAGCATCTCTGGACTCTCAT
i ponAbe2.chr15             I 10054 C 0
s macFas5.chr7               65351621  998 + 171882078 GGGGCA-GCCT-GAGGGTGGGGG--ACACACACGCACACGCCGGAGTGTGCACACACATGCTGTGAGGCCCCACTG-CCTGCATGCACACACTAACACACATGCCCACAAAAAACACGCATACGCTGCCTTCCCC-------------GCCCAGCACCCTCATTGGCCGGCCTGTGCCACAAGGATCTGGGACATGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCGCCCGCACACA-GAGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTGGTGTGCTCAGAGGACCACCCACGCTGCTCA--TGGAGACAGGGCTTGCTCACC-AATGTCCAGCTGTCATTTCTCCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCACTGAACCCCAACAAGTCACACTCTTCAGACTTTGAAGGTTCTCCACCCTACGCCCCACCTTCCCCACAGA-----------GCTCTTCCTCATTCTGTCTGTGTTCCCTGCTTTGGCCAGGGGCTATCCTCGATGCGACCCACACTACACCTCTGCCCATG--GCAGCTTTTTACCCAGTTATCCTCCAATTCCTCACCACATAAG-CCTATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGCCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGTAAGGTCAGGATTTGTCAAATGTTTAGCGTGTGTTAGCAAGACTGGAGTCGGAGCAGGCAtcaaacctta--catcccacatgtcacacctcaccacacacctGGGTGCCAAATAGCTTGAAGAGTCTGAACTCACGTTGGCAGTTAGCAAAGGGCTCCTATGGCTGCAtctgcagtt----------------aacatag---------catccctatggccactgcctcccgggatctccacagccatcctaggagaaaggcagaacat----catcatttgatagaagggatactgaagctctgggaggaaaagggacttgcctaaagccccaggatgaagcagcaaatctggactcTCAC
i macFas5.chr7              C 0 C 0
s canFam3.chr9               55254611 1022 +  61074082 AGGGCAGGCCTGGGGGGTGGGGGTCACGCACACGCACACGCCCGGGCGTGCACACACATGCTGGGAGGCCCCACGGCCCCGCATGCACACACTGACACACATGCCCACAGACAACACGCATACAC------CTCCCCCACCTCCCGCTGCCCAGCACCCTCACTGGCTGGCACGTGCAGCACGGATC-GGGGCATGCAGCCACTCGGCACATTGAAGCACACGCGTGGGCTGAGTCACGACACAGAAGCTCGCCCATACACAGGAGGCATTTGCACCAGCTCCCTGCACATTCGTGCCTGGAGTGCTCAGAGGGCCACCTGCAATGCTCCATAAGGGACAGGACTTGCTTTCTCAGGGTCCAGCTGTCATTTCTCTGCCCGAGAACCTTCCATGGCTCCCTAGTCCCCATAGCATTGAGTCCCAA---------------GAATTTTTAAGGTTCTGCAGCCTGC-CCCCACTGTACCCACGGCAACCTTTTCTTATTCTTCCTCATTCTATC--TGCACTCTTCTCTGGCCAGTGGCTCTCCTCAATGCATCCCAAGCTAAACCTTTGCCTTCATTGCTGCTCCATACCGA---CGCCCCTGACTCCTCATCACCTGAGTCTTATCTCAATCAGCCCCCAGACCTCCCCTAGGTCAATCTGTCTTGAAGCA----TCCCAGACTGTTCTCTTCCCCGAGGCAAGGCGATGACTTGCCAAGCATTTCCTGTATGTTAGTGAGACTGGAGTTAGAGCAGGTGCCAAATCTTCCTCTTCCCATATGTCACACCTGGGCA----------TGTCAAATACCCTTAAGAATCTCGACTCACAAGAGAAGTTAGCAAAGTGCTCCTATAGCCACATCTGCAGTTTGTGGCTACAGTCTGAACTGTAGAACTGCAGACAGttctacagtcactgtctcccttgatcctcacaccaaccctgggagaaaggcagaatgttaaatatcatgtggtagaagggaaactaaggccctggaagagaaagtgacttgccgaaag-cccagggtgaaccagaacatctggactccaat
i canFam3.chr9              C 0 T 21040
e calJac3.chr10             113857898 2596 - 132174527 I
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e nomLeu3.chr6               18835039    0 - 121039945 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=330125.000000
s hg38.chr15_KI270850v1_alt    232946 1447 +    430880 AGACAGCCTAGAGCTGCCAGCACTCCCTTAGGATCTGTGCCCTCAGGCCTGGCTTAATTTTTTCCTCTGCAAAGAGCCATCTGTAGGGCCAGAGGCTGGCAAAGCCTGACTCATTACTGGACGCCAGTTCCTTTGCCTGACATTCAGTGATTTCTGCCTTACCCTGGGGTTTTATGTTGCTTGTCTCAACACTGTCACTTCTCATTCCTCCACAAGTTGAATTGCTCACTCCAGCCACTTGAAGCATGCTCTTCTTAACACAGTTAGCTCTAGGCACATGGTTGGTGCTAAAAAGGAAAAAAA----------AAGAAGAACGTTATGTCAATTTCATTGATTAACAAAAGCGATGGCTCCACTGCAAAGCAAAGTTGACACT-CCTGGGTCTCTGAGTTCAAGAGCC-TTTAGAAAAATGGCTCTGAGCTAAAACATGATCATGCACGCATATGCATCTGTCTCGGTCTGATGAGATAATCTGGATACTTGCTTGTTATCCTTGAGCATTTTCCTGCCTCATTAATGTATGTGTAGCCACCACAATAATAATCATAGCTAATAATGGCTACAGCTGAGGGCTTTCCTGAACCAGGCAGTGGTTTTA--------------------AAAACTTTAACCCCTAAAGCTGAGGACTTTCCTAAGCTAGATAGTGGCTTTGAAAACTTTAAAGTTTTCACATAGACTGTCACTGAATAATTTCTGTTTTTCAGATCAAGAAACTGAGACTTACTATCATATTTGGGATTAAGCTaaaaaaaaaaaaaaag-----aaaCagaggctgaacgc-gtcaagtatttcacagccagcagg-----aaatcagaacttgaacccaggcagtctagccctgggatcctttccccttacccattatCCAGTGTTGGCTACACAAAACTAATGAGTACATATTTTCAACTATAGTTTAAGTGGGTGACATATTTTTCACTATATTTTATGTAGGTGACTTTCAGTTTGGGGGTATTCTACTTACACAATCTATTGAGCTGGATATTAACTGAGAGCAAACAGAAACTAATGAACTCTGAAAAACATAAAACATGAGCAACATGACATCACTGCAAGAGACAAAACAGCACATAGCCTTCTTGTGACTGTATTTTGCTGACAGTCCATGAGATGAT----AGCCTGAACTCAGCAGTGCTGTTCCCTTGGGAGacacacacacacacacacacacacacacacacacacacac----------------------------------------------------acacacacacGAGTTGGTGGTTGTGCTGCCCGGAGCCTCCAGTCCGCGAGTGTGAAGAACGGACCAGATGGGTCCAGCAG-TGCTGGGTCAAGGCGAGGAGGGGGCAGCCGGAAGCGCGCGCATGCTCTGGACTCC-TGCAGCCGCCAAAACGGGTGCGCAGGGTGCACGC-gggttgaggggtgaggggcgacgggtgtgaggggcgagagggacgggagcggggtaggggCAGCCCTTTCCCAGGCGGTAGC
s ponAbe2.chr15              80090667 1520 +  99152023 AGACAGCCTAGAGCTGCCAGCATCCCCTTAGGATCTGTGCCCTCAGGCCTGGCTTAATTTTTTCCTCTCCAAGGAGCCATCTGTAGGGCCAGAGGCTGGCAAAGCGTGACTCATTACTGGATGCCAGTTCCTTTGCCTGACTTTCAGTGATTCCTACCTTACCTTGGGGTTTTATGTTGCTTGTCTCAACACTATCATTTCTCATTCCTCCACAAGTTGAATTGCTCACTCTAGCCACTTGAAGCATGCTCTTCTTGACACACTTAGCTCTAGG-ACATGGTTGGTGCTAAAAAGGAAAAAAAAAAAAAAAAGAAGAAGAGCGTTATGTCAATTTCATTGATTAACAAAAGTGATGGCTCCACTGCAAAGCAAAGTTGATACT-CCTGGGCCTCTGAGTTCAAGAGCCTTTTAGACAAATGGCTCTGAGCTAAAACATGATCATGCACGCATATGCATCTGTCTGGGTCTGATGAGATAATCTGGATACTTGGCTGTTATCCTTGAGCATTTTCCTGCCTCATTAATGCATGTGTAGCCAGCACAATAATAATCATAGCTAATAATGGCTAAAGCTGAGGGCTTTCCTGAGCCAGGCAGTGGCTTTAAAAACTTTAAAGTGGCTTTTAAAACTTTAACCCCTAAAGCTGAGGACTTTCCTGAGCCAGATAGTGGCTTTGAAAACTTTAAAGTTTTCACATAGACTCTCATTGAATAATTTCTGTTTTTCAGATCAAGAATCTGAGACTTACTATCACATTTGGGATTAAGTTTAAAAAAAAAGAAaaataaataaactgaggcttaatgctgtcaagtatttcacagtcagcagg-----aaatcggaacttgaacccaggcagtctagccctgggatcctgtgcccttacccattatCCAGTGTTGGCTACAGAAAACTAATGAGTACATATTTTCAACTATAGTTTAAGTGGGTGACATATTTTTCGCTATATTTTATGTAGGTGACTTTCAGTTTGGGGGTATTCTACTTAAACAATCTATTGAGCTGGATATTAACTGAGAACAGACAGAAACTAATGAACTCTGAAAAACATAAAACATGAGCAACATGATGTCACTGCAAAAGACAAAACAGCACATAGCCTTCTTGTGACTGTATTTTGCTGACAGTCCATGAGCTAAT----AGCCTGAACTCAGCAGTACTGTTCCCTTGGGagacagacagacagacagacagacagacacacacacacacaCACG---------------AGTTGGTGGTTTTCTGCCCCCCACCCCCACCCCAACACACACAGGAGTTGGTGGTTGTGCTGCCCGGAGCCTCCAGTCCGCGAGTGTGAAGAACGGACCAGATGGGTCCAACAGTTGCTGGGTCAAGGCGAGGAAGGGGCAGCCGGAAGCGCGCGCATGCTCTGGACTCG-TGCACCCGCCGAAACGGGTGCGCACCGGGCGCGCGggggtgaggggtgaggggtgaggg--gtgaggggCGAGAGGGACGGGAGCGGGGTAGGGGCAGCCCTTTCCCAGGCGATAGA
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7               65352619 1496 + 171882078 AGACAGCCCAGAGCTGCCGGCATTTCCTTACAATCTGCGCCCTCGGGTCTGACTTAATTTTTTCCTCTCCAAAGGGCCACGTGTAGGGCCAGAGGTTGGCAAAGCCTGACTCATTTCTGGATGCCAGTTCCTTTGCCTGACTTTCAGTGATTCCTACCTTACCCT-GGGTTTTGTGTTTCTTGTCTCAACACTATCATTTCTCATTCCTCCACAAGTTGAACTGCTCACTCCAGCCACCTGAAGCATGCTCTTCTTGACACAGTTAACTCTAGGCACATGGTTGGTGCTTAAAAGAA----------------AAAAAGAGCGTTATGTCAATTTCATTGATTAACAAAACTGATGGTTCCACTACAAAGTAAAGTAGATACTGCCTGGGCCTCTGAGTTCAACAGCCTTTTAGACAAATGGCTCTGAGCTAAAACATGAGCATGCATGTATATGTATCTGTCTCGGTCTGATGAGATAATCTGGATGCTTAGTTGTTATCCTTGAGCATTTTCCTGCCTCATTAATGCATGTGTAGCCAGCACAACAATAAT--GTGCTAATAATGGCTAAAGCTGAGGGCTTTCCTGAGCCAGGCAGTGGCTGAA-ACACTTTAAAGTGGCCTTTAAAACTTTAACCCCTAAAGCTGAGGACTTTCCTGAGCCAGATAGTGGCTGTAAAAAC--TAAAGTTTTTACATAGACTCTCATTGAATAATTTCTGTTTTTCAGATCAAGAAACTGAGACTTACTATCACATTTGGGATTAAGTTAAAaaaaaattaac-------aaattgaggcttaaagttgtcaagcatttcaaagccagcaagtggctaaatcagaacttgaacccaggaagtctagccctgggatcctgtgcccttacccagtatCCAGTGTTGGCTACACAAAACTAATGAGTACATGTTTTCAACTATACTTTAAGTGGGTGACATATTTTTCACTATATTTTATGTAGGTGACTTTCAGTTTGGGAGTATTCTACTTACACAATCTATTGAGCTGGATATTAACTGAGAACAAACAGAAACTAATGAACTCTGAAAAACATAAAAGGTGAGCAACATGATGTCACTGCAAAAGACAAAACAGCCCATAGTCTTTTGGTGACTGTATTTTGCTGACAGTCCATGAGTTAATACTCAAGCTGAACTCAGCACTGCTGTTCCCTTGGGAGACAGACAGACAGACAGacacacacacacacacacacacacacacacacacacacacacaGTTGGTGGTTTTGTGCCCTGCCCCCCCTTA---ACACACACCGGAGTTTCTGGTTGTGCTGCCCAGAGCCTCCAGTCCGTGA--GTGAGGAACGGACCACATGGGTCCAGCAG-TGCTGGGTCAAGGCGAGGAGGGGGCAGCCGGAAGCGCGCACATGCTCTGGTCTCGTTGCACCAGCCGAAATGGGTGTGCACGGGGCGCGC--------------AGGGATGAGGG--GTGAGGGGTGAGAGGGACAGG-GCGGGATGGTGACAG-CCTTTCCcaggcggtaac
i macFas5.chr7              C 0 I 18636
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e nomLeu3.chr6               18835039    0 - 121039945 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=97946.000000
s hg38.chr15_KI270850v1_alt    234393 1125 +    430880 GGGGGCTGTGGTGCTGTTGCCCTTTTAAGCTGCGGCTTGACAGGAGCAGCGTCTCCTGTCGGTGGAGTCTGTTACAAGGGGAGCAGCCGCCCAGGCCGCCACACAGCTCCCCGCAGAGGCCTCGGTGCCCCTTGCCATTTTCCAGCCCTACTCCGACTAGAGTTGAGGCAGCAGGGAGAGGCGGAGCTGGGAGAGCGCCGCCGAGAGGTCCCGCGGGTGGTTGCGGCCGTGACAGCGGCTCCCGACGGGCTCACCTTCCGCGCCCCTCCCGCCAGAGGTGAGAGTAAAATGTCCGTGTGAGGGTTCAAGGCCAAGCTGAGGTTGTTGGCCTCTATCTTCCACAAGAACCAGGAGCCCCCGCCACAGCTCACGCTCCACTGCAACATCACGGTGAGGCGCCCAGTGGCGGCCTCACGGGCCAGGGCGAGGGCGGAGAGGAGGCGCCCAGAGTCCCGGGACAAAGGGGAGCCTGCCCGGGAGAGGCCCCGGTTCCCCAGGCGGGGCGAGCGCGCCCCTTTCTCCCGCGTCTGGCCCGCCCCGCTGTGTGAGGCTTGCGTGGGAGGAGGGGGAGGGCGCGTCTCTCTGGCTCCTTGCCGCGGGGCTGGCTTGGGGGCTGCCGGCACCTCTCGCCCCAGTCGCTGCGCCCTGAGGTGGGAGCCCGCGTCGCCCGCAGACCTGTTGGGGCCCATGATCGCCCTCAGTCAGCTAGCCTGCTCCCCTGGACCGCGACGGGGCGTGGCAGGGCGGCTCCCGCTGTTGTTTGAGCCCAGTGAGGGAAGGGGAAAGGCCTTTAAGATTTTCGGTTTTTTggccgggcgcagtgctcattcctgtaatcccagcactatgggagactgaggcagctggatctcctgaggtcaggagttctagaccagcctggccaacatggtaaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcaggcgcttcttgagatggagtctcactctgtcgcccaggctggagtgcagtggagcgatctcggcatactgcagcctccatctcttgacagtctgtgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacgggcgcccgccaccacgcctgg
s ponAbe2.chr15              80092187 1124 +  99152023 GGGGACGGCTGTGCTGTTGCCCTTTTAAGCTGCGGCTTGACAGGAGCAGCGCCTCCTGTAGGTGGAGTCTGTTACAAGGGGAGCAGCCGCCCAGGCCGCCACACAGCTCCCCGCAGAGGCCTCGGTGCCCCTTGCCATTTTCCAGCCCTACTCCGACTAGAGTCGAGGCAGCGGGGAGAGGCGGAGCTGGGAAAGCGCCGCCGAGAGGTCTCGCGGGTGGTCGCGGCCATGACAGCGGCTCCCGACCTGCTCACCTTCCGCGTCCCTCCCGCCAGAGGTGAGAGTAAAATGTCCGTGTCGGGGTTCAAGGCTAAGCTGAAGTTGCTGGCCTCTGTCTTCCACAAGAACCAGGAGCCACCGCCGCAGCTCAGGCTCCACTGCAACACCACGGTGAGGCGCCCAGTGGCGGCCTCACGGGGCAGGGCGAGGGCGGAGAGGAGGCCCCCAGAGTCCCGGGACAAAGTGGAGCCTGCCCGGGAGAGGCCCCGGTTCCCCTGGCGGGGCAAGCGCGCCCCCTTCTCCCGCGACTGGCCCGCCCCGCTGCGTGAGGCTTGGGTGGGAGGAGGGGGAGGGCGCGTCTCTCTGGCTCTTTG-CGCGGGGCTGGCTTGGGGGCTGCGGACACCTCTTGCCCCAGTCGCCGCGCCCCGAGGTGGGAGCCCGCGTCGCCCGCAGCCGTTTCGGGGCCCATAGTCGCCCTCAGTCAGCCAGCCTGCTCCCCGGGACCGCGACGAGGCGTGGCAGGGCGGCTCCGGCTGTTGTTTGAGCCCAGGCGGGGAAGGGGAAAGGCCTTTAAGATTTTCGGGTTTTTggccgggcgcagtgctcattcctgtaatcccagcagtttgggagactgaggcagctggatctcctgaggtcaggagttctagaccagcttggccaacatggtaaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcaggcgcttgttgagatggagtctcactctgtcgcccaggctggagtgcagtggggcgatctcggcttactgcagcctccgtctcttgacagtccatgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacgcctgg
i ponAbe2.chr15             C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e macFas5.chr7               65354115 18636 + 171882078 I
e nomLeu3.chr6               18835039    0 - 121039945 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=188665.000000
s hg38.chr15_KI270850v1_alt    235518 730 +    430880 ctaagttttgtgttgtttagtagagatggggtttcatcatgttggccaggctggtctcgaactcctgacctcaaatgacccatctctgcctcccagagttctgggattacaggcctgagccaccgcgcccagATCCAAGGCCCTTAAGCTTAAATGCCTCGTTCTTCAGTCAGGTTTTCCTTGTTCCCGCATGTTCAGCCAATCGTGTTTAAGGAGAAACTAACAATGAAAACGGACTCGTTGATGGAGGAAAAGTTGGAATGCAGCCTCTGGTGCTGTTTGAGCGATCCCTCTACCCCGGGTCGCTGCTGTGTTCTGGAAAGGCGCATTGTACCCTGGATGCAGCAGGTAAGAGTCCTGTCCAGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCCCTAACCCTACCCAATTTGTCTTTACGTGTCTGACCATCAAGGCTCTTCTGGGTCATATTTAATTCATGCTGATATTTCCCCTTCCTCCCCTCTTTAGTCC----TATTTTTGCTTTGGTTATGTTATGCTATATTCTGTAAGGCTTTAAAAAAA-TTTTTATGGTGGCAGGGGAGAATGTTTTATAATTATGCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTATGACCCTATTCTAGCTATATTGTGCTTGAACAAAAACCT
s ponAbe2.chr15              80093311 732 +  99152023 ctaacttttgtgttgtttagtagagacggagtttcatcatgttggccaggctggtctcaaactcctgatctcaaatgacccatctctgcctcccaaagttctgggattacaggcctgagccaccgcgcccTGATCCAAGGCCCTTAAGCTTAAACGCCTCATTCTTCAGTCAGGTTTTCCTTGTTCCCACATGTTCAGCCAATCGTTTTTAAGGAGAAACTAACAATGAAAACGGACTCGTTGATGGAGGAAAAGTTGGAATGCAGCCTCTGGTGCTGTTTGAGTGATCCCTCC-CCCCGGGCCGCTGCTGTGTTCTGGAAAGGCGCATTGTACCCTGGATGCGGCAGGTAAGAGTCCTGTCTAGGTGCTCTGCCCGC-TTTCTTTTCAGGCTTCTGTATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACGGCCACCCCCTAACCCTACCCAATTTATCTTTACGTGTCTGACCATCAAGGCTCTTCTGGGTCATATTTAGTTCATGCTGATATTTCCCCTTCCTCCCCTCTTTAGTCCTCATTATTTTTGCTTTGGTTATGTTATGCTGTATTTTGTAAGGCTTTAAAAAAA-TTTTTATGGTGGCAGGGGAGAATGTTTTATAATTATGCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTATGACCCTATTCTAGCTATATTGTGCTTGAACAAAAATCT
i ponAbe2.chr15             C 0 I 16
s nomLeu3.chr6               18835039 734 - 121039945 ctaacttttgtgttgtttactagagactgggtttcaccatgttagccaggctggtctcaaactcctgacctctaatgacccaactctgcctcccaaagctctgggattacaggcctgagccaccacacctggATCCAAGGCCCTTAAGCTTAAACGCCTTATTCTTCAGTCAGGTTTTCCTTGTTCCCGCGTGTTCAGCCAATCGTTTTTAAGGAGAAACTAACAATGAAAACGGACTCGTTGAC-GAGGAAAAGTTGGAATGCAGCCTCTGGTGCTGTTTGAGCGATCCCTCTCCCCCGGGCCGCTGCTGTGTTCTGGAAAGGTGCATTGTACCGTGGATGCAGCAGGTAAGAGTCCTGTCCAGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTATATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCCCTAACCCTACCCAATTTGTCTTTACGCGCCTGACCATCAAGGCTCTTCTGGGTCATATTTAGTTTGTGCTGATGTTTCCCCTTCCTCCCCTCTTTAGTCCTCACTATTTTTGCTTTGGTCATGTTATGCTGTATTCTGTAAGGCTTAAAAAAACTTTTTTATGGTGGCAGGGGAGAATGTTTTATAAGTATGCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTTGGTAAATGTTTGTTTTATTGAATGTATGACCCTATTCTAGCTATATTGTGCTTGAACAAAAATCT
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e macFas5.chr7               65354115 18636 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=373.000000
s hg38.chr15_KI270850v1_alt    236248 4 +    430880 TAAC
s nomLeu3.chr6               18835773 4 - 121039945 TAAC
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958 1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7               65354115 18636 + 171882078 I
e ponAbe2.chr15              80094043 16 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=421600.000000
s hg38.chr15_KI270850v1_alt    236252 1714 +    430880 TGCCTAGTAAGTTAACTGCTAAGAATTTGTCAGAAGTGCAGACATAACATCAAGAACTTGTCATGGATAGTACAAAAACGTCACTTAAGGGCTTGGTGGAAGCCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGAAAATGTAAAGCATGACTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAGTGTTATGTGATCTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGTTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCTTACAATGATGTTCTCAGTAGCTACAATTG----CTGTCTTTGAATACGTAAGCATTTTTTTTTAGGTGACAGGGATATATGTGCATTTTTATTTTACCAAGTGTTAGAATTTTGACTCTGCTTTTGTGGGCTCTGGGTTAGCTACTTGGTTGTTGTAAAATGATTAGCAGGGAAAGCtgtgtgtgtgtgtgtgtatgtgtgtgtgtTATAAGTTTCTTTTGTTGTCAGAGGACTTAGAATTTTATTTTATATGGTAATTCTGTCAATTTACTTTATTCTCCACCCCACATTTATTGAACAGCAAATTATGAAAGTAATGTGTCCCATAAGCAGCCTTCAGAAGAATTACAACTGCTGTATATCTGAAAttcttttttttattttttattttgagatggagtctcactctatcacccaagctggagtacagtggtgcaatcttggctcactggaacctctgctgcccaggttcaagcaattctcctgcctcagcctcctgagtggctgggattacaggcacctgccaccacacctggctaatttttgtagctttagtagagacaggtttcaccatgttggccaggctggtcttgaattcctgacctcgtgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagctaccgcacctggcTGAACTTTCAAGGAGAAGTTTGTGCATCAGTTTTCAAAAAATTATGATATCAAAAGATAGCTGTGCCCTACATTTGGAAAGATACAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGGCACACATTGGTCTCAGTGGAATTATGGAGAAAAATAGAT----AAAGTTATTTCTAAATAAGACCAAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGT-GGGATGGTAGTGGTGATAAACTTGCTGGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCATCCTCACAGGCCTTGAAATTAGTATAAAACTAACAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGTGTTTTCATTACTGGTGAAAAAGAGCAGTATTAGAAGCACTTACACATTCTATAGAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTAACTGTATAAAAACAGGCATATTGTAGGTAATATTTTAAAGACAAACAGAAAATTTATCTTTTCAAGATGGATCTAAAA------CTTATCAAAATTACAAAATTTAAAAC--GTGATTGAAAAATATTAATGTATAGGTTTAAATATTGG
s ponAbe2.chr15              80094059 1715 +  99152023 GGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGACATAACATCAAGAACTTGTTATGGATAGTACAAAAAGGTCTC-TAAGGGCTTGATGGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGAAAATGTAAAGCATGACTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAGTGTTATGTGGTCTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTCGGAACCTGGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCGTCAT-AACACCTTTGTTTTCTCTGCCTCAGTTTGCTTACAATGATGTTCTCAGTAGCTATAATTGCTGTCTGTCTTTGAATACTTAAGCA-TTTTTTTTAGATGACAGGGATATATGTGCATTTTTATTTTACCAAGTGTTAGAATTTTTACTCTGCTTTTGTGGGCTCTGGGTTAGCTACTTAGTTGTTGTAAAATGATTAGCAGGGAAAACTGCGTGTGTGTG------TATGTGTGTATTTTAAGTTTCTTTTGTTGTCAGAGGACTTCAAATTTTATTTTATATGGTAATTCTGTCAATTCACTTTATTCTCCACCCCACATTTATTGAACAGCAAAGTATGAAAGTAATGTGTCCCATAAGCAGCCTTCAGAAGAATTACAACTGCTGCATACCTGAAAtttttttt----ttttttattttgagatggagtctcactctatcacccaggctggagtacagtggtgcaatcttggctcactggaacctctgctgcccaggttcaagcaattcttctgcctcagcctcctgagtagctgggattacaggcacctgccaccgcacctggctaatttttgtagctttagtagagacaggtttcaccatgttggccaggctggtcttgaattcctgacctcgtgatctgcctgccttagtctcccaaagtgctaggattacaggtgtgagctaccgcgcccggctGAACTTTCAAGAAGAAATTTGTGCGTCAGTTTTCAAAAAATTATGATATCAAAAGATAGCTGTGCCCTACATTTGGAAAGATACAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTCAGATAGAGGCACACATTGGTCTCAGTGGATTTAAGGAGAAAAATAGATACAGAAAGTTCTTTCTAAACAAGACCAAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTGGAAATTTGTCTGCTTA---TAACCTTTGTGGTATCTGTCACAGACATCTTCATCCTCACAGGCCTTGAAATTAGTATGAAACTAACAGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGTGTTTTCATAACTGGTGAAAAAGAGTAGTATTAGAAGCACTTACACATTCTATGTAAGGAACACTGCCTGAATTTATATTGCAATTTTTGAGCACCATTCACTGTTTAAAAACAGGCATATTGTAGGTAATATTTTAAAGACAAACAGAAAATTTATCTTTTCAAGATGGATCTAAAGCTTAACCTTATCAAAATTACAAAATTGAAAGCATGTGATTGAAAAATATTAATGCATAGGTTTAAATATTGG
i ponAbe2.chr15             I 16 C 0
s nomLeu3.chr6               18835777 1662 - 121039945 TGCTTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGACATAACTTCAAGAACTTGTCATGGATAGTACAAAAAGGTCTC-TAAGGGCTTGATGGAAGTCTGTAAATTGACTCCCTATGAAAGAGAGTGTAAGAAGTGAAAATGTAAAGCATGACTGGAGACCCAGAGTG-----------------------------------------------------TTCTAGAAGATCGTTCTGAAAGATAATGCCTACTCGGGACCTAGGAAACCATCTAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCTTACAGTGATGTTCTCAGTAGCTGTAATTGCTGTCTGTCTTTGAATACTTAAGCA--TATTTTTAGATGACAGGGATATATGTGCATTTTTATTTTACCAAGTGTTAGAATTTTTACTCTGCTTTTGTGGTCTCTGGGTTAGCTACTTGGTTGTTGTAAAATGATTAGCAGGGAAAACtgtgcgtgtgtgtgtg--tatgtgtgtATTTTAAGTTTCTTTTGTTGTCGGAGGACTTCGAATTTTATTTTATATGGTAATTCTGCCAATTTGCTTTATTCTCCATCCCACATTTATTGAACAGCAAAGTATGAAAGTAATGTGTTCCATAAGCAGCCTTCAGAAGAATTACAACTGCTGTATATCAGAAAtttttt------ttttttatttttagatggagtctcattctatcacccaggccggagtacactggtgcgatcttgcctcactggaacctgtgccgcccaggttcaagcgattttcctgcctcagcctcctgagtagctgggattacaggcacctgccaccacacctggctaatttttgtagttttagtagagacaggtttcaccatgttggccaggctggtcttgaattcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacaggtgtgagctaccacgcccggcTGAACTTTCCAGAAGAAGTTTGTGCATCAGTTTTCAAAAAATTATGTTATCAAAA-ATAGCTGTGCCCTACATTTGGAAAGATACAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGGCACACATTGGTCTCAGTGGATTTATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACCCAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTGGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCATCCTCACAGGCCTTGAAATTAGTATAAAACTAACAGAATAGAGGAGAAACAAAGGTCCTGAATAATTAGATGCTTAGATAATTGTTCTGTGTTTTCATAACCAGTGAAAAAGAGCAGTATTAGAAGC----ACACATTCTATGTAAGGAACACTGCCTGAATTTATATTGCAATTTTTGAGCACCATTCACTGTTTAAAAACAGGCATATTGTAGGTAATATTTTAAAGACAAATAGAAAATTTATCTTTTCAAGATGGATCTAAAGTTTAACCTTATCAAAATTACAAAATTTAAAGCATGTGATTGAAAAATATTAATGCATAGGTTTAAATATTGG
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e macFas5.chr7               65354115 18636 + 171882078 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=351835.000000
s hg38.chr15_KI270850v1_alt    237966 732 +    430880 TCATTTTAAATGTCTTTCAAAATAGATTGTCTCTTAAATATTCAACTGAACAAACTTTGAACATGTTGTAGAGTTTGTGCCGAAGGTTAAATTTCCTGGGGTGATGGATAttttgtaatatggaaaacaaaaccttcttattttaagaaatttagaaaacttttaggcaaaactagaaaatattacctatgtaattctaccactcagaaggtgccactgtcagaaatttgtatctttcc-agtcatctgctcacctcttttctcctgtgcttgtgtatgtttcctctcccttaaaaatcagatatttgtttgtaatctgctttttcactcaacagtatTGTAGATCCATGTTATAACTTACTCCTCTACATTGCCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTTTACCATGTAGTCAGTCATGTTTTCTGGTACTGAATACATACGGgtatgtgtgtgtgtgcgtgcgcgtgtgtgtgcgtATTTTTTTGTAACTTAACTAATGCTTTAGACATCAGTAGGTAGACGTAAATCCTTGAAACCTTCCACGTGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAActttttttt---tcttttttttttctttttttttttgagatgaagtcttgttcttgtcacccaggctggagtgcaatggcgtgat-----ctcactgcaacctccacctcctgggttcaagc
s ponAbe2.chr15              80095774 733 +  99152023 TCATTTTAAATGTCTTTCAAAATAGATTGTCTCTTAAATATTAGACTGAACAAACTTTGAACATGTTATAGAGTTTGTGCTGAAGGTTAAATTTCCTGGGGTGATGGATAttttgtaatatggaaaacaaaactttcttattttaagaaatttagaaaactttcaggcaaaactagaaaacattacctatgtcattctaccactgagaaggtgtcgctgtgagaaatttgtatctttcc-agtcatctgctcatctcttttctcctgtgcttgcataggtttcctctcccttaaaaatcagatacttgtttgtaatctgctttttcactcaacagtattgtagatccatgttataacttactcctctacattgccttcagttattgtgtgctttctgttggatgactgtaccatgtagtcagtcatgttttctggtactgaatacataggggtatgtgtgtgtgtgcgtgcgcgtgtgtgtgcatatttttttctaacttaactaatgctttagacatcagtaggtagacctaaatccttgAAACCTTCCACGTGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCTAGAGATGGAAGAAATTATATTGTATGGGAACtttttttt--ctttttttttcttttttttttttttgagatgaagtcttgttcttgtcgcccaggctggagtgcagtggcatgat-----ctcactgcaacctccacctcctgggttcaagc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18837439 737 - 121039945 TCATTTTAGATGTCTTTCAAAATAGATTGTCTCTTAAATATTAAACTGAACAAACTTTGAACATAATGTTGAGTTTGTGCTGAAGGTTAAATTTCCTGGGGTGATGGATATTTTATAATATGTAAAACAAAGC---CTTATTTTAAGAAATTTAGAAAACTTTTAGGCAAAACTAGAAAATATTACCTATATAATTCTACCACTCAGAAAGTTCCACTGTCAGAAATTTGTATCTTTCC-AGTCAGCTGCTCATCTCTTTTCTCCTATGCTTGTATATGTTTCCTCTCCCTTAAAAATCAGATATTTGTTTGTAATCTGCTTTTTCACTCAGCAGTATTGTAGATCCATGCTATAACTTACTCCTCTCCATTGCCTTCAGTTAGTGTGTGCTTTCTGTTGGATGACTGTACCATGTAGTCCGTCATGTTTTCTGGTACTGAATACAtatgggtatgtgtacgtgtgtgtgcgtgcgtgtatgtatATTTCTTTCTACGTTAACTAATGCTTTAGATATCAATAGGTAGACCTAAATCCTTGAAACCTTCCACGTGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCTAGAGATGGGAGAAATTATATTGTATGGGAACtttttttcttttcttttttttttttttttttttttgagatgaagtcttgttcttgtcgcccaggctggagtgcaatggcatgatctcagctcactgcaacctccacctcctgggttcaagc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106508229 714 - 171882078 TCATTTTAAATGTCTTTCAAAATAGGTTGACTCTTAA-------ACTTAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGCTAAATTTCCCGGGGTGATGGCTATTTTATAATATGGAAAGCAAAACCTTC-----TTAAGAAATTCAGCAATTTTTTAGGCAAAACTAGAAAATATTACCTATATAATTCTACCACTCAGAAGGTGCCACTATCAGAAATTTGTATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTTGTGTATGTTTCCTCTCCCTTAAAAATCAGATTTTTGTTTGTAATCTGCTTTTTCACTCAACAATATTGTAGATCCACGTCATAACTTGCTTCTCTACATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCATGCAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGgtatgtgtgtgtgtgcgtgcgcgtgtgtgCGCGTATTTTTTTCTAACTTAACTAATGCTTTAGACATCAATAGGTAGACCTAAATCCTTGAAACCTTCCACGTGGTGACTTTCAATTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAACtttttttt---------------ccttttttttttgagatgaagtcttgttcttgtctcccaggctggagtgcaatggcgtgatcacagctcactgcaacctccgcctcccgggttcaagt
i macFas5.chr7              n 18636 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=317724.000000
s hg38.chr15_KI270850v1_alt    238698 1223 +    430880 aattctcctgcctcagcctcccgagtagctgagattacaggcgcatgccaccatgcctggctaatttttgtatttttagtagaaacggagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatttgcccacttcagcctcccaaagtgttgggaatacaggtgtgagccgctgtg-cccagccTTTTTTTCATCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCTAGAAAGTAGTTTGGCTTTCTAGAAACTTGTTTGAATTCTCCCTGTTTAGGCAGGATGAATTCTCACTACCCCAAGGTGGCCAACCTTGTCCCTGTGATTCCATCTCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACCCAGATTTGTTTGGCTTAGCCCATCTGACAGCTAATCACTGGAAATGGGGTAGGCTGGTAGAATGCTTTGGTCAGGTTTTGTGTTGAGAGAGAGGTGGAAAGATGGGAGGGAGGTAGCAAAACTTGCCTCAGTGGAACTATGTAAGTTAATATAGAATGGCAAAGGGATGTTTCTTCCAAGGAAGAAATTCTAGAGAAGGAA-GAAAGTGGAGGGGAAGGcagcagttctccaagttttggggtcaggattcctttacactcttaaaaatacattgaggtcccaaggagctttggtttatgtagggtatatctattggtatttatcactagaaattaaatcagaaatatttaaaatattgtttaaaagctcaccacatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagtacagtcttacatcttttgcaaattattttgatgtttgatatgtcatttgcatgatg-----------------------------------tttgatatgtcattagcaaattgatatgtcagtttgcttctgcattcaatttattgtgtgatattttcttgaaaaaatgtgaacaaaggccagtctcatacagataaccattttagatcattgtggatatatatatat-ttttttgagatgaggtcttgccctgttgcccaggctggaaggtagtggtatgatcatagctcactgcagcctcagtctccagggactcaggtgatcctcccacctcagcctccagagtagctgggactacaggtgtgtaccaccatactt
s ponAbe2.chr15              80096507 1256 +  99152023 aattctcccgcctcagcctcccgagtagctgagattacaggcgcatgccaccatgcctggctaatttttgtatttttagtagagatggagttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatttgcccacttcagcctcccaaagtgttgggaatacaggtgtgagccactgtg-cccagccTTTTTTTCATCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATAATCTTTGACCTTCTAGAAAGTAGTTCAGCTTTCTAGAAACTTGTCTGAATTCTCCCTGTTTAGGCAGGATGAATTCTCACTACCCCAAGGTGGCCAACCTTGTCCCTGTGATTCCATCTCTCCCAGAAAGAGAGGTCCAGTCTCAGGGAAAACCCAGATTTGCTTGGCTTAGCCCACCTGACAGCTGATCACTGGAAATGGGGTGGGCCGGTAGAGTCCTTTGGTCAGGTTTTGTGTTGAGAGAGAGGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTATGTAAGTTAAAATCGAATGGCAAAGGGATGTTTCTTCCAAGGAAGAAATTCTAGGGAAGGAA-GAAAGTGGAGGGGAAGGcagcagttctccaagttttggggtcaggattcctttacactcttaaaaatatattgagggcccaaggagctttgctttatgtagggtatatctattggtatttatcactagaaattaaatcagaaatatttaaaatattctttaaaagctcaccacatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagtacaatcttacatcttttgcaaatttctttgatgtttgatatgtcatctgcatgatgtttgatatgtcatttgcatgatgtttgatatgtcatttgatatgtcattagcaagttgatatgtcagtttgcttctgcattcaatttattgtgtgatattttcttgaaaaagtgtgaacaaaggccaatctcatacagataaccattttagatcattgtggatatatatata---tttttgagatggggccttgccctgttgcccaggctggaaggcagtggtgtgatcacagctcactgcagcctcagtctctggggactcgggtgatcctcccacctcagcctccggagtagttgggactacaggtgtgtaccaccacactt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18838176 1232 - 121039945 aattctcctgcctcagcctcccaagtagctgagattacaggcgcatgccaccatgcctggctaatttttgtatttttagtaaagacggagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatttggccacctcggcctcccaaagtattgggattacaggtgtgagccactgtacccCAGCATTTTTTTCATCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTATGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCTAGAAAGTAGTTTGGCTTTCTAGAAACTTGTCTGAATTCTCCCTGTTTAGGCAGGATGAATTCTCACTACCCCAAGGTGGCCAACCTTGTCTCTGTGATTCCATCTCTCCCAGAAAGAGAGGTCTAGTCTCAGGGAAAACCCAGATTTGCTTCACTTAGCACACCTGACAGCTAATCACTGGAAATGGGGTGGGCTGGTAGAATCCTTTGGTCAGGTTTTATGTTGAGAGAGAGGTGTAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTATGTAAGTTAATATAGAATGGCAAAGGGATGTTTCTTCCAAGGAAGAAATTCTagggaaggaaggaaagtggaggggaaggcagcagttctcctagttttggggtcaggattcctttacactcttaaaaatatattgagggcccaaggagctttggtttatgtaggttatatctattggtatttatcactagaaattaaatcagaaatatttaaaatattctttaaaagctcaccacatattgttataaatgcttttatgaaaagaaaatttctaaacccaaagtagtacaatcttacatcttttgcaaatttctttgatgtt-----tgtcatttgcatgatg-----------------------tctgatatgtcatttgatatgtcattagcaaattgatatgtcaatttgcttctgcattcaatttattgtgtgatattttcttgaaaaaatgtgaacaaaggccaacctcatacagatagccattttagatcattgtggatatatatatatatttattgagatggggtcttg-cctgttgcccaggctggaaggcagtggtttgatcacagctcactgcagcctcagtctctggggactcaggtgatcctcccacctcagcctccagagtagttgggactacaggtgtgtaccaccacactt
i nomLeu3.chr6              C 0 I 182
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e macFas5.chr7              106508943    0 - 171882078 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=508182.000000
s hg38.chr15_KI270850v1_alt    239921 1979 +    430880 ggctaa----------------------------------------------------------------------------ctttttgtattttttgtagagacagggttttgcca---tgttgcctaggcttcttttttgatactccatcaaatcttggtttttcttgaactttggatcttccacccttgcatgatattacaacatcgtgcattggtcacttataaaacagtggttcactaagatcttctacatgttgatacat----ttgtacagtatcaaaatacattcatcagtaccaccatcaatctcatcagaatacttttggaaagcgatggtgggcataagttttctaaaattctaattttttgttcaaaagcttgaattttattagtaattttgttattgaattttattatagcctgtctgttgttttccttgaaatgacagaatctcatgttttgagaaaatatctgccagaaatgcgagttaaaataacattttttgtcagtcagcctttcaagtaaaaatggtattccattaaagtggttaattcacttcatgacttagccactcaagggtttttcctcaggcagcctgtaggaatgctcatgtatacttcccatttcatcacttgaaatattaaaaagatatattcaatgatttagatatagtaaaatattcactgcttcatcatagacattcttttttttttttttaattttcgagacagggccttgttctgtcacccaggctggagtgcagtagcgtgatcacagctcactgcagcctcaactttctgggttcagtcaatcctcctgcctcagccttccaagacgctgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtaaagatgaggtttcaccaggttgcccaggcaggtcttgaactcccgggctcaagggatccccctgcctgggccttccaaagtgctggaattacagacatgagccaaaattcccaaacttatcatagacattcttaaatgaaactgaccttttgttgcccttcctttttatttttatttttggagacggagttttgctctgttgcccagtctggagttacataggtgcaatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctaagtatttggtaatacaggcatgcaccaccacaccgagctaatttttgtatttttagtagagatggggtttcaccatgttggccaagctcgtctcaaactcctgaccttaagtgatccgtctacctcagcctcccaaagcactgggattactggtgtaggccaccatgtcccacccacccttcctttttaaacctttcctgtgcctaatgaagaataccatgactactagtagtttggtgttactgcttttgtttgtgctaaagtaccagcatttttacccaccattgtatttgcacacttacagcaaatgtcaccatgttagtattcctgtcaaaatagtttggacttgggggtctgagggccgcactttgggaaccattgAAATAGGTACTTAGACGTACTAGATATCATATCTTTTCATCTACAAGGTTTTTAAAAACTTGATTTCAGTTAATTTTTTTTTTGTAACTTTTAAAATATGGTTTTGAGGGGTTTCAGTCCAGAGCAACAACACGTATTTTATTTTGCTTATGCTGAAG-TTTACTAGA-AAATACTAACCTAACAGAATGAAGTCCTAAATCTAATTGCAATTTCCTTAGCCAAAAGAAAAAAAAACGAAAATTAAAAGTGTAAAAATAGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAACTGGTGTTCTTTAAGAATAGGGTTggctgggcgcggtggctcatgcctgtaatcccaacactttgggaggccgaggtgggtggatcatctgagattaggggttcgagaccagcctgaccaacatagagaaaccccgtctctactaaaaatacaaaattagtggggcatgatggcac
s ponAbe2.chr15              80097763 1981 +  99152023 ggctga----------------------------------------------------------------------------ctttttgtattttttgtagagacagtgttttgcca---tgttgcctaggcttcttttttgatactccatcaaatcttggtttttcttgaactttggatcttccacccttgcatgatattacaacatcatgcattggtcattaataaaatagtggttcactaagatcttctacatgttgatacatttgattgtacagtatcaaaatacattcatcaataccaccatcaatctcatcagaatacttttggaaagcgatggtggatataagttttctaaaattctaattttttgttcaaaattttgaattttattagtaattttattattgaattttattatggcctgtctgttgttttccttgaaatgacagaatctcattttttgagaaaatatctgccagaaatgcaagttaaaataacattttttgtcagtcagcctttcaagtaaaaatggtattccattaaagtggttaattcacttcatgacttagtcactcaagggttttttctcaggcagcctgtaggaatgctcatgtatacttcccatttcatcacttgaaatattaaaaagatgtattcaaggatttagatgtagtaaaatattcactgcttcatcatagacgttc----ttttttttttaatttttgagacagggccttgttctgtcacccaggctggagtgcagtagtgtgatcacagctcactgcagcctcaactttctgggttcagtcaatcctcctgcctcagccttccaagaagctgggactacaggcatgcagccactgtgttcagctaatttttgtattttttatagagatgaggtttcaccaggttgtccaagcaggtcttgaactcctgggctcaagtgatccccctgcctgggccttccaaagtgctggaattacagacatgagccaaaattcccaaccttatcatagacattcttaaatgaaactgaccttttgttgcccttcctttgtatttttatttttggagacggagttttgctctgttgcccagtctggagttacataggtgcaatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctaagtatctgggactacaggtatgcaccaccacactgagctgatttttgtatttttagtagagatggggtttcaccatgttggccaagctggtctcaaactcctgacctcaggtgacccgtctacctcagcctcccaaagcactggatttacaggtgtaggccaccatgccccacccgcccttcctttttaaacctttcctgtgcatagtgaagaataccatgactactagtagtttggtgttactgcctttatttgtgctaaagtaccagcatttttacccaccattgtatttgcacacttacagcaaatgtcaccatgttagtattcctgtcaaaatagtttggacttgggggtctgagggccacactttgggaaccattgAAATAGGTACTTAGACCTACTAGATATCATATCTTTTCATCTACAAGGTTTTTAAAAGCTTAATTTCAGttaattttttttttgtaatttttaaaataCGGTTTTGAGGGGTTTCAGTCCAAAGCAACAACACGTATTTTATTTTGCTTATGCTGAAGTTTTACTAGACAAATACTAACCTAACGGAATGAGGTCCTAAATCTAATTGCAATTTCCTTAGCCAAAAGAAAAAAAACCCAAAATTAAAAGCGTAAAAATAGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTTAAGAATAGTATTggctgggcgcggtggctcacacctgtaatcccaacactctgggaggccgaggtgggcggatcatctgagattaggggttcgagaccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagccaggcatgatggcac
i ponAbe2.chr15             C 0 I 1068
s nomLeu3.chr6               18839590 2050 - 121039945 ggctaattttttgtatttttagtagagacggagtttcactgtggtctcgatctcctgacctcgtgatccgcccgcctcgtccttttttgtattttttgtagagacagggttttgccatgttgttgcctaggcttcttttttgataatccatcaaagcttggtttttcttgaactttggatcttccacccttgcaagatattataacatcgtgcattggtcatttataaaatagtggttcactaagatcttctacatgttgatacatttgattgtacagtatcagaatacattcatcaatatcaccatcaatctcatcagaaaacttttggaaagcaatggtggatataagttttctaaaataataattttttgttcaaaagcttgaattttattagtaattttattattgaatcttattatggcctgtc----gttttccttgaaatgaaagaatctcattttttgagaaaatatctgccagaaatgcaagttaaaataacattttttgtcagtcagcctttcaagtaaaaatggtattccattaaagtggttaattcacttcatgacttagtcactcaagggttttttttcaggcagcctgtaggaatgctcatgtatacttcgcatttcatcacttgaaatattaaaaagatatattcaaggatttagatgtagtaaaatattcactgcttcatcatagacattc----ttttttttttaatctttgagacagggccttgttctgttacccaggctggagtgcagtagcatgatcacagctcactgcagcctcaactttctgggttcagtcaatccttctacctcggccttccaagaagctgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtagagatgaggtttcaccaggttgcccaggcaggtcttgaactcccgggctcaagtgatccccctgcctgggccttccaaagtgctggaattatagacatgagccaaaattcccgaccttatcatagacattcttaaatgaaactgaccttttgttgcccttcctttttatttttatttttggagatggagttttgctctgttgcccagtctggaattacataggcacaatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccaagtgtctgggactacaggcatgcaccaccacactgagctaatttttgtatttttagtagagatggggtttcaccatgttggcgaagctggtctcaaactcctgacctcaggtgatctgtctgcctcagcctcccaaagcactgggattacaggtgtgagccaccgtgccccacccacccttcctttttaaacctttcctgtgcataatgaagaataccatgactactagtagtttggtgttactgcctttgtttgtgctaaagtaccagcatttttacccaccattgtatttgcacgcttacagcaaatgtcaccatgttagtactcctgtcaaaatagtttggacttgggggtctgagggccacactttgggaaccattgAAATAGGTACTTAGACCTACTATATATCATATCTTTTCATCTACAAGGTTTTTAAAAACTTGATTTCAGTTAA--TTTTTTTTGTAATTTTTAAAATGTGGTTTTGAGGGGTTTCAGTCCAGAGAAACAACACGTATTTTATTTTGCTTATGCTGAAG-TTTACTAGACAAATACTAACCTAACAGAATGAGGTCCTAAATCTAATTGCAATTTCCTTAGCCAAAAG---AAAACCCCAAAATTAAAATCGTAAAAATTGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTTAAGAATAGGATTggctgggcgaggtggctcacacctgtaatcccaacactttgggaggccgaggtgggcggatcatctgagactgggggttcaagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaagttagccaggcgtgatggcac
i nomLeu3.chr6              I 182 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e macFas5.chr7              106508943    0 - 171882078 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=6839.000000
s hg38.chr15_KI270850v1_alt    241900 78 +    430880 atgcctgtaatcccagctactcaggaaggctgaggcaggagaattgcttgaacctgggaggtggaggttgtgatgagc
s nomLeu3.chr6               18841640 78 - 121039945 atgcctgtaatcccagctacttaagaaggctgaggcaggagaattgcttgaacccaggaggtggaggttgtggtgagc
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958  1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e macFas5.chr7              106508943  0 - 171882078 C
e ponAbe2.chr15              80099744 1068 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=81943.000000
s hg38.chr15_KI270850v1_alt    241978 338 +    430880 tgagatcgtgccactgcgctccagcctgggcaacaagagcgaaactcggtctcaaaaaaaaaacaaaaaagaaaaaaaa-gaaTAGGAGTAATTCTGAAGAGTTTCTTTTAGCCTGTAAAGAGATTTGGAACACAGTAAGA-GAGGAATGAGAAGAATGAGAATAGTAAAATAAACCATTATTGAAGAGATATGCTGTTAATGATGTCCTCCATCAATACAACttgtttctctttttgtttgtttgttttttgagatggagtcttgctctatcgccagcctggagtgcagtgg-acatctcagcccactgaaacctctgcctcccgggttcaagtgattcc
s ponAbe2.chr15              80100812 336 +  99152023 tgagatcgttcccctgcactccagcctgggcaacaagagcgaaactcggtctcaaaaaaaaccaaaaaaagaaaaaaaaagaaGAGGAGTAATTTTGAAGAGTTTCTTTTAGCCTGTAAAGAGATTTCCAACACAGTAAGAAGAGGAATGAGAAGAATGAGAATAGTAAAATAAACCATTACTGAAGAGATATACTGTTAATGATGTCCTCCTTCAATACAACttgtttttcttttt-----tttgttttttgagatggagtcttgctctatcgccaggctggagtgcagtggcgcatctcagctcactgaaacctctgcctcccgggttcaagtgattcc
i ponAbe2.chr15             I 1068 I 317
s nomLeu3.chr6               18841718 331 - 121039945 tgagatcgtaccactgcactccagcctgggcaacaagagcgaaactcggtctcaaaaaaaaaacaaagaagaaaaa----gaaTAGGAGTAATTCTGAAGAGTTTCTTTTAGCCTGTAAAGAGATTTGGAACACAGTAAGA-GAGGAATGAGAAGAATGAGAATAGTAAAATAAACCATTATTGAAGAGATAGACTGTTAATGATGTCCTCCTTCAATACAACTTGtttttcttttt-----tttgttttttgagacagagtcttgctctatcgccaggctggagtgcagtggcgcatctcagctcactgaaacctctgcctcctgggttcaagcgattcc
i nomLeu3.chr6              C 0 I 321
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e macFas5.chr7              106508943   0 - 171882078 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=282831.000000
s hg38.chr15_KI270850v1_alt    242316 1102 +    430880 cctgcctcagcctcctgagtagctgggactacaggcacccgccagcgcgcccagctaatttttttgtatttttttagtagagatggggtttctccgtgttagccaggacggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgagattagaggcgcgagccaccgtgcccggccCATCTTGCTTTTCTTAAAAAGGAACCTTCAGTAAATATTTGGTTTCTGTGGCTTCAGCTTTAACTCAGATTACAGTTTTCAAAGCACTGTTGCCTAAAGTTGTTTGTGCAAAATTGTTTTCTGTGACTTGAACCTAGTTATTCTGAAACTAATATATAATAATAATGGTTTTTCCCCAATTTATAATAGAGA------------------------------------------------------------ACAGTACAAAGTAACAGCGGGAACGTCTGTTAGTGGGTGAAAGCACATAATGCATAGTTCATTAGCTTTTTTAAAAAATCACATGTAATTGTGTTACAAAAATATAT--GTATAGTAATGGCATTTACTTGGTATTACCTGGTTTGTGTGATAGAATAAAATATTAGAATTTTATGGTGTTTGAGttagttatctattgctctgtaacaaactgagcagcttaaaataacaaacattatctca--gtttctgtgggtcaggattctgtccagtttaccttgggttcactggcttggcctctcaccaggcagtgaaggtgttggtggtggctgtgatcatcccaaggcaggatagggagagaatctgtctccaagctcaggttggcaggattcatctcagaggctgctggactgggcctccgtttctagatggctattggtcagaggctttttacaataccttgtcacgtgggcctctccatagggcacctcatcacatggcaactggcttccatcagagggagcaatggaaagagcaggagaagggtgaccaaggcaggcatcgtagtctccttgtagcctcacctcagaagcgatg---ttacttttgctgtattctctttgttagaagtgagtcactaggtccaggggtggaattttacaagggtgtgaatggcaggaggtgagggtgatcagggccatttagaggctgcctaccaGTGTTG
s ponAbe2.chr15              80101465 1165 +  99152023 cctgcctcagcctcctgagtagctgggactacaggcgcccgccagcgcgcccagctaatttttttgtatttttttagtagagatggggtttctccgtgttagccaggacggtctcaatctcctgacctcgtgatccacccacctcggcctctcaaagtgctgagattacaggcgtgagccaccgtgcccggccCATCTTGTTTTTCTTAAAAAGGAACCTTCAGTAAATATTTGGTTTCTGTGGCTTCAGCTTTAATTCAGATTACAGTTTTCAAAGCAGTTTTGCCTAAAGTTGTTTGTGCAAAATTGTTTTCTGTGACTTGAACCTAGTTATTCTGAAGCTAATATATGATAATAATGTTTTTTCCCCAATTTATAATAGAGANNNNNNNNNNTTCTGAAGCTAATATATGATAATAATGTTTTTTCCCCAATTATAATAGAGACAGTACAAGTAAGCAGGGGGAATGTCTGT-AGTGGGTGAAAGCACATAATGCATAGTTCATTAGTTTTTTTAAAAAATCACATGTAATTGTGTTCCAAAAATATATATGTATAGTAATGGCATTTACTTGGTATTACTTGGTTTGTGTGATAGAATAAAATATTAGAATTTTATGGTGTTTGAGttagttatctattgccctgtaacaaatttagcagcttaaaacaacacacattatctcacagtttctgtgggtcaggattctgtccagtttaccttgggttcactggcttggcctctgaccaggcagtgaaggtgttggtggcggctgtgatcatcccaaggcaggatagggagagaatctgtctccaagctcacattggcaggattcatctcagaggctgttggactgggcctccgtttctagatggctattggtcagaggccttttacaataccttgccatgtgggcctctccatagggcacctcatcacatggcaactggcttccatcagagggagcaatgcaaagagcaggagaagggtgaccaaggcaggcatcgtagtctccttgtagcctcacctcagaagtgatg---ttacttttgctatattctctttgttagaagtgagtcactaggtccaggggtggaattttacaagggtgtgaatggcaggaggtgagggtgatcagggccatttagaggctgcctaccaGTGTTG
i ponAbe2.chr15             I 317 C 0
s nomLeu3.chr6               18842370 1097 - 121039945 cctgcctcagcctcctgagtagctgggactacaggcacctgccaccgcgcccagctaatttttttgtatttttttagtagagatgaggtttctctgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccagccCATCTTGTTTTTCTTAAAAAGGAACCTTCAGTAAATATTTGGTTTCTGTGGCTTCAACTTTAATTCAGATTACAGTTTTCAAAGCAGTGTTGCCTAAAGTTGTTTGTGCAAAATTGTTTTCCATGACTTGAACCTAGTTATTCTGAAGCTAATATATAATAATAATGGTTTTCCCCCAATTTATAATAGAGA------------------------------------------------------------ACAGTACAAAGTAACAGGGGGAATGTCTGTTAGTGGGTGAAAGCACATAATGTGTAGTTCATTAGCTTTTTAAAAAAATCACATGTAATTGTGTTCCAAAAATATAT--GTATAGTAATGGCATTTACTTGGTATTACTTGGTTTGTGTGATAGAATAAAATGTTAGAATTTTATGGTGTTtgaattagttatctattgctctgtaacaaatttagcagcttaaaacaacaaacattatctcacagtttctgtgggtcaggattctgtgcagtttaccttgggttcactggcttggcctctgaccaggcagtgaaggtgttggtggcggctgtgatcatcccaaggcaggatagggagagaatccgtctccaagctcatgttggcaggattcatctcagaggctgttggactgggcctccgtttctagatggctgttggtcagaggtcttttacaataccttgccatgtggacctctccatagggcacctcatcacatggcaactggcttccatcagagggagcagtggaaagagcaggtgaagggtgaccaaggcaggcatcgtagtctccttgtagcctcatctcagaagtgatgttattactttggctgtattctctttgttagaagtgagtcactaggtccaggggtggaattttacaagggtgtgaatggcaggaggtgagggtgatc----------agaggctgcctaccaGTGTTG
i nomLeu3.chr6              I 321 I 315
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958    1 -  24206276 I
e papAnu2.JH685126              72611   92 +    130206 I
e macFas5.chr7              106508943    0 - 171882078 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=161518.000000
s hg38.chr15_KI270850v1_alt    243418 640 +    430880 AAGAAAATTGTTGACTTCTATGAGCTGTAGCAGCAGACAGTGCTATGCAAGGAGAATGGCTGTCTCAGAAGTCCAGCTCCTCACATGGGTTTAAACGTGTTGCCTTTTCCCCCTGATACATTTTGTTTAAATCCATGGTCATCTTGCCATTTAGTGGTGTGGTTTAATTGCATATTTGGGTTAGTCTGTATGTAAACATTTAACATAGGTGTCTCTGGGTTAAACAGGAATCCTATTCATCTTCTTCACCGATATGGTCTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAACATCTAGAAGATACTAAGGAGAACAGTTCAGTAAGGAAAGAAACCAAGCTATTTTCTCTTTTCCTCATGa--acattatatttagaaattaaatgttaagtgataatattatataaaaacatgattaataactataatcttaGAGGAATTAAAGTCTGGGTATTTTAAGTCCTCCAAATCTTATTTACTACCTGGTTTCTCTTTATTATTTCCCACATGTATAATCTTAGTTTAGATTAGCAATTCGGGATCTCTTTTTCCCTGAATTCTAACCATTAAGCCAAGCAAGCATTTTGGGTGGAGACCACTAGCCAAGGTGGGAAGTAGAAAGAAGACCAAGGTG
s ponAbe2.chr15              80102630 612 +  99152023 AAGAAAATTGTTGACTTCTATGAGCTGTAGCAGCAGACAGTGCTATGCAAGGAGAATGGCTGTCTCAGAAGTCCAGCTCCTCACATGGGTTTAAACGTGTTGCCTTTTCCCCC--ATACATTTTGTTTAAATCCATGGTCATCTTGCCATTTAGTGGTGTGGTTTAATTGCATATTTGGGTTAGTCTGTATGTAAACATTTAACATAGCTGTCTCTGGGTTAAACAGGAATCCTGTTCATCTTC---ACCGATATGGTCTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGGACAACAGTTGGGTGAGGAAAGAAACCAAGCTATTTTCTCTTTTCCTCATGA--ACATTATATTTAGAAATTAAATGTTAAGTGATAATATTATATAAAAGCATGATTAATAACTATAATCTTAGAGGAATTAAAGTCTGGGTATTTTAAGTCCTCCAAATCTTACTTACTACCTGTATTCTCTTTATTATTTCCCACATGTATAACCTTAGTTTAGATTAGGAATTCAGGGTCTCTTTTTCCCTGAATTCTAACGATTAAGCCAAGCAAGCGTTTTGGGTGGAGACCACTAGCCAAGGTGG-----------------------
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18843782 642 - 121039945 aagaaaATTGTTGACTTCTATGAGCTGTAGCAGCAGACAGTGCTATGCAAGGAGAATGGCTATCTCAGAAGTCCAGCTCCTCACATGGGTTTTAATGTGTTGCCTTTTCCCCCTGATACATTTTGTTTAAATCCATGGTCATCTTACCATTTAGTGGTGTGGTTTAATTGCATATTTGGGTTAGTCTGTATGTAAACATTTAACATAGGTGTCTCTGGGTTAAACAGGAATCCTATTCATCTTCTTCACCGATATGGTTTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAATGTCTAGAAGATACTAAGGACAACAGTTCAGTGAGGAAAGAAGCCAAGCTATTTTCTCTTTTCCTCATGAatatattatatttagaaattaaatgttaagtgataattttatataAAAGCATGATTAATGACTATAATCTTAGAGGAATTAAAGTCTGGGTATTTTAAGTCCTCCAAATCTTACTTACTACCTGGATTCTCTTTATTATTTCCCACATGTATAACCTTAGTTTAGATTAGGAATTCGGGATCACTTTTTCCCTGAATTCTAACCATTAAGCCAAGCAAGCATTTTGGGTGGAGACCACTAGCCAAGGTGGGAATTAGAAAAAAGACCAAGGTG
i nomLeu3.chr6              I 315 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e macFas5.chr7              106508943   0 - 171882078 C
e panTro4.chr15              80015810 37738 +  99548318 M

a score=457508.000000
s hg38.chr15_KI270850v1_alt    244058 972 +    430880 GAAGTGAAGGGAGAGATGGGGAGAATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAGCATAACTTTCCATTTTGCAAAAACTTTAGAAAtc--ttttttcttgattataaaacttataagcaaccattattgagaagattagtaaaatataaaaaaataaaaatctcacataatttctctacctaatataagtactgttgacatgatagctagtttctatcagtatgtattgc-ttctttgttatcaaagtacttatacccttacagatatgtttaaatagttgaggtcatattctataaataTCTATAAATAgctgggtgctgtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcacaaggtcaggagtttgagaccagcctggccaatatggtgaaacctcatctctactaaaaatacaaaaattagcccggtgtggtggcaggtgactgtagtcccagctactcggcaggctgaggcaggagaattgcttgaacccaggaggcagaggtttcagtgagtcgagatcgcaccactgaggtccagcctgggtggcagagcaagactccatctaaataaataaaTTATGTATacacacacatacacacaccctcatatatatatacacacaTATGTGTGTGTATATacacacacacacacacacacaca--------cacacacacCTACACATGACCGATTGCCTCGCCTCTAGCATTGGGAATCAGTCACCGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACATTGCCCCTCCAAAGTGCGCCACTTCCAGTGCGCCCCACTGTCATGCCCGGCCTGTGGACAGCCAGACCCTGCCATCCCTCCCACCCCCGACCAA
s ponAbe2.chr15              80103242 974 +  99152023 -AAGTGAAGGGAGAGACGGGGAGAATGACACCAGAACTAGTGGGAGGGGATTGCCTTTCCTTTCAAGGGTCTCTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAGCATAACTTTCCATTTTG-AAAAACTTTAGAAACC--tttttgcttgattataaaacttataagcaaccattattgaga---ttagtaaaatataaaaaaataaaaatctcacataatttctctacctaatataaccactgttgacatgatagctagtttctatcaggatgtattgc-ttctttgttatcaaagtacttatacccttacagatatgtttaaatagttgaggtcatattctataaataTCTATAAATagctgggtgctgtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcacaaggtcaggagtttgagaccagcctggccaatatggtgaaacctcatctctactaaaaatacaaaaattagcccggcgtggtggcaggtgactatagtcccagctactcggcaggctgaggcaggagaattgcttgaacccaggaagcagaggtttcagtgagtcgagattgtgccactgcactccagcctgggcaacagagcaagactccatctaaataaataaaTtatatatacacacacatacacacactctcatatatatatatacatatgtgtgtgtatataGacacacacacacacacacacacatatacatacacatacacctacacatGGCTGATTGCCTCACCTCTAGCACTGGGAATCAGTCACCATGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACATTGCCCCTCCAAAGTGCGCCACTTCCAGTGAGCCTC-CTGTCATGCCTGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACCACCAACCAA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18844424 960 - 121039945 GAAGTGAAGGGAGAGATGGGGAGAATAACACCAGAACTGGTGGGAGGGAATTGCCTTTTCTTTAAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAGTATGACTTTCCATTTTGCAAAAACTTTAGAAAAC--ttttttcttgattataaaacttataagcaaccattattgaga---ttagtaaaatataaaaaaataaaaatctcacataatttctctacctaatataaccactgttgacatAATAGCTGGTTTCTATCAGTATGTATTGC-TTCTTTGTTATCAAAGTACTTATACCCTTACAGatatgtttaaatagtttaggtaatattctgtaaatatctataaatagccaggtgctgtggctcacacctgtaatcccatcattgtgggaggccgaggcaggcagatcacaaggtcaggagtttgagaccagcctggccaatatggtgaaacctcatctctactaaaaatacaaaaattagccagacgtggtggcaggtgactgtagtcccagctactcggcaggctgaggcaggagaattgcttgaacccaggaggcagaggtttcagtgagtcgagatcacgccactgcactccagcctgggtgacagagcaagactccatctaaataaataaattatatatacacacacatacacacaccctcatatatatatacacatatatgtgtgtgtatatatacacacacacacaca--------------cacatacacctacacaGGGCCGATTGCCTCACCTCTAGCACTGGGAATCAGTCACTGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACATTGCCCCTCCAAAGTGCGCCACTTCCAGTGAGCCTCCCTGTCATGCCCAGCCTGTGGACAGCCAGAC---GCCATCCCTCCCACCCCCCACCAA
i nomLeu3.chr6              C 0 M 5913
s macFas5.chr7              106508943 914 - 171882078 gaAATGAAGGCAGAGATGGGGAGAATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTATCTTTAGTATATAAAGAAGTATAACTTCCCATTTTGCAAAAACTTTAGAAACCttttttttcttgattataaaacttgtaaagaaccattattgagaccagtagtaaaatataaaaaaattaaaatctcacataatttctctacctaatataaccactgttgacatgatggctagtttctatcagtatgtattttgttttttgttatcaaagtacatatacccttacagatatttttaaatagttgaggtcatat----------tctataaatagccgggtgctgtggctcacgcctgtaatcctagcactttgggaggccgaggcaggcagatcacaaggtcaggagtttgagaccagcctcgccaatatggtgaaacctcatctctactaaaaatacaaaaagcaaccggtagtggtggcgggtgcctgtagtcccagctacttggcaggctggggcaggagcatcgcttgaacccaggaggcagaggtttcagtttgccgagatcgcgccactgcactccagcctgggggacagagcaagactccatctaaataaataaat-------------aaaTacaca--------------------------------tatatatacacacacacacacata--------------gatatacacctacacGTGGCCGATTGCCTCGCCTCTAGCGCTGGGAATCAGTCACTGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACTTTGTCCCTCCAAAGTGCGCCACCTCTGGTGAGCCTCCCTGTCATGTCTGGCCTGTGGACAGCCAGCCCCCGCCATCCCCCTCACCCCTCACCAA
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=63285.000000
s hg38.chr15_KI270850v1_alt    245030 258 +    430880 GCATGGGGGTGCTCTGTAGGTAGCTGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTCAGCTGAGAATCAAACCCATTTCTGGATGACAGGGAATGTGTCTTCTGCTGGCTGTGTTCTCTGTGGAGCTCAGGGGAGGGAAAAGGCCAAGCTATTTCTAGGGTGCTGTCAGGACCGATGAAAAGGTCACACCCTTTCCAAGAGACACTTTTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
s ponAbe2.chr15              80104216 257 +  99152023 GCATGGGGGTGCTGTGTAGGCAGCTGTGTGGTCTGACAGTCTCTACCAGTCCTGCTGTCCCTCAGCTGAGAATCAAACCCATTTCTGGATGACGGGGAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAGCTCAGGGGAGGGAAAAGGCCAAGCCATTTCTAGGGTGCTGTCAGGACCAGTGAAAAGGTCACACCCTTTCCAAGGGA-ACTTTTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATTCTGTGATA
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              106509857 255 - 171882078 GCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTTGATTGAGAATCAGATCCATTTCTGGATGACAGATAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAACTC--GGGAGGGGAAAGGCCAAACCATTTCTAGGGTGCTGTTGGGAGCGGTGAAAAGGTCACACCCTTTCCAAGTGACACTTTTCCTGGAAAG-CCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958   1 -  24206276 I
e papAnu2.JH685126              72611  92 +    130206 I
e nomLeu3.chr6               18845384 5913 - 121039945 M
e panTro4.chr15              80015810 37738 +  99548318 M

a score=1746.000000
s hg38.chr15_KI270850v1_alt    245288 3 +    430880 AGC
s ponAbe2.chr15              80104473 3 +  99152023 AGC
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              106510112 3 - 171882078 AGC
i macFas5.chr7              C 0 C 0
s calJac3.chr10             114223356 3 - 132174527 AGC
i calJac3.chr10             n 2596 C 0
e canFam3.chr9               55255633 21040 +  61074082 T
e chlSab2.chr29              21075958 1 -  24206276 I
e papAnu2.JH685126              72611 92 +    130206 I
e nomLeu3.chr6               18845384 5913 - 121039945 M
e panTro4.chr15              80015810 37738 +  99548318 M

a score=7350.000000
s hg38.chr15_KI270850v1_alt    245291 9 +    430880 CAGAGGCTC
s ponAbe2.chr15              80104476 9 +  99152023 CAGAGGCTC
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              106510115 9 - 171882078 CAGAGGCTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7705641 9 +  58131712 CAGAGGCTC
i chlSab2.chr26             n 1 C 0
s calJac3.chr10             114223359 9 - 132174527 CAGATACTC
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55255633 21040 +  61074082 T
e papAnu2.JH685126              72611 92 +    130206 I
e nomLeu3.chr6               18845384 5913 - 121039945 M
e panTro4.chr15              80015810 37738 +  99548318 M

a score=4012.000000
s hg38.chr15_KI270850v1_alt    245300 6 +    430880 TGGGGG
s ponAbe2.chr15              80104485 6 +  99152023 TGGGGG
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              106510124 6 - 171882078 TAGGGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7705650 6 +  58131712 TACGGA
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114223368 6 - 132174527 TCGGAG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881343 6 + 124595110 TAAGGG
i mm10.chr9                 N 0 C 0
e canFam3.chr9               55255633 21040 +  61074082 T
e papAnu2.JH685126              72611 92 +    130206 I
e nomLeu3.chr6               18845384 5913 - 121039945 M
e panTro4.chr15              80015810 37738 +  99548318 M

a score=23553.000000
s hg38.chr15_KI270850v1_alt    245306 15 +    430880 GTGAGGGAGCAGAAA
s ponAbe2.chr15              80104491 15 +  99152023 GTGAGAGAGCAGAAA
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116075436 15 - 170124641 GTGAGGGAGGAGAAA
i rheMac3.chr7              N 0 C 0
s macFas5.chr7              106510130 15 - 171882078 GTGAGGGAGCAGAAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7705656 15 +  58131712 GTGAGGGAGGAGAAA
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114223374 15 - 132174527 GTGAGGGAGCAGAAA
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881349 15 + 124595110 GCATGGGAACAGAAA
i mm10.chr9                 C 0 C 0
e canFam3.chr9               55255633 21040 +  61074082 T
e papAnu2.JH685126              72611 92 +    130206 I
e nomLeu3.chr6               18845384 5913 - 121039945 M
e panTro4.chr15              80015810 37738 +  99548318 M

a score=194680.000000
s hg38.chr15_KI270850v1_alt    245321 136 +    430880 CCCTCCTC--ACCCCAGCCA-ACGGGGACCTGTATACCTCTGC--CAGTCTCTCACTTGGCCTTGCTGCTGTCCTCTGAGACTGCCTGTTCCTCCCTCTCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCCTCT
s ponAbe2.chr15              80104506 136 +  99152023 CCCTCGTC--ACCCCACCCA-ACGGGGACCTGTATACCTCTGC--CAGCCTCTCACTTGGCCTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTCTCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCCTCT
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116075451 136 - 170124641 CCCTCCCT--GCCCCACCTG-AGGGGGACCTGTGTACCCCTGC--CAGTCTCTCACTTGGCCTTGCTGCTGTCCTCAGAGACTGCTGCTTCCTCCCTCTCTGTGA--CTGTACACCACTGTCACCTCCTCCAGGAAGTCTTCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106510145 136 - 171882078 CCCTCCTC--ACCCCACCCA-GTGGGGTCCTGTACACCTCTGC--CAGTCTCTCACTTGGACTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTCTCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCTTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7705671 135 +  58131712 CCCTCCTT--GCCCC-CACA-AGGGGGACCTGTGTACCCCTGC--CAGTCTCTCACTTGGCCTTGCTGCTGTCCTCAGAGACTGCTGCTTCCTCCCTCTCTGTGA--CTGTACACCACCGTCACCTCCTCCAGGAAGTCTTCT
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114223389 136 - 132174527 CCCTCCTT--GCCCCACCCA-AGGGGGACCTGTGTACCCCTGC--TAGTCTCTCACTCGGCCTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTCTCTGTGA--TGCTACAGCACTGTCACCTCCTCCAGGAAGTCCTCT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881364 105 + 124595110 CCTCCATT--GCTA---------------------------GC--CGACCTTCCACCGATCCTT-------CTCCCTGAGATCATTTATTCCTCTTCCTCTGTGATGCTTTATGCCGCCCTCACCTCCTCCAGGATGTCCTCC
i mm10.chr9                 C 0 I 1
s canFam3.chr30               1730896 127 -  40214260 CCCTCCTCTGGCTCCAGCTGTTCCAGAGCCCGCACATCTCTGCTTCAGTCTGTCACTTGGCCTTGCTGC---CCTTTGAAACCCCCGCCTGCTC-------------CTCTCTCCCAGCGTCACCTCCCCAAGGAAGCCCTCT
i canFam3.chr30             n 21040 C 0
e papAnu2.JH685126              72611  92 +    130206 I
e nomLeu3.chr6               18845384 5913 - 121039945 M
e panTro4.chr15              80015810 37738 +  99548318 M

a score=93067.000000
s hg38.chr15_KI270850v1_alt    245457 45 +    430880 -GGATTGACTCCTAGCTTATTACCTCTTTATTGTGCAGACCCTCTC
s ponAbe2.chr15              80104642 45 +  99152023 -GGATTGACTCCTAGCTTATTACATCTTTATTGTGCAGACCCTCTC
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116075587 45 - 170124641 -GGATTGACTCCTAGCTTATTAAATCTTTATCCTGCAGACCCTCTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106510281 45 - 171882078 -GGATTGACTCCTAGCTTATTAAATCTTTATCCTGCAGACCCTCTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102471617 45 - 162156779 -GGATTGACTCCTAGCTTACTAAATATTTATCCTTCAGACCCTCTC
i papAnu2.chr7              I 1975 C 0
s chlSab2.chr26               7705806 45 +  58131712 -GGATTGACTTCTAGCTTATTACGTCTTTATCCGGCACATCATCTC
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114223525 45 - 132174527 -GGATTGACTCCTAAGTTATCACATCTTTATCCCACACACCCTCTC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881470 45 + 124595110 -GGATTGACTTCTGGCTTGTTATTTCTTCATCCTGCACCCTCTTTA
i mm10.chr9                 I 1 C 0
s canFam3.chr30               1731023 43 -  40214260 GGAACTGACTCCTAGCT---CACGGCTTCGTCCTGCCCTGCCTCCC
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18845384 5913 - 121039945 M
e panTro4.chr15              80015810 37738 +  99548318 M

a score=1066357.000000
s hg38.chr15_KI270850v1_alt    245502 372 +    430880 CATTCAAAGCCCCTCTTCAACT---G-CCCCCCCCCCCCACTACCTCCAAGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGAAAAA-GGAGATCAGGAG--GTGAGGGAAGCAGCGCTGTCAGAGTTTCCAAAGCCCCGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGAGT-G-GGGGCCTCCCTGG-CTATGCGC-TCCAGCTGCACAAGGCAGCCTCTGTGAGCCTCTCCC-ACTCAGCCCTACAGGAAGCAGCAGGGCCCAG--CCTCAATGGACCCATTCAGA-CCCCAGCGCTCCGGAAAGTACCTCTGCTTCCTGCCACCATTCCACTCT-------------GGCCAAACAGGCT-CTACTCTCTTCTG--
s ponAbe2.chr15              80104687 369 +  99152023 CACTCAAATCCCCTCTTCAACT---G-CCCACCCCCC--ACTACCTCCAAGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGAAAAA-GGAGATCAGGAG--GTGGGGGAAGCAGCGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGGT-G-GGA-CCTCCCTGG-CTATGCAC-TCCAGCAGCACAAGGCAGCCTCTGTGAGCTTCTCCC-ACTCAGCCCTACAGGAAGCAGGAGGGCCCAG--CCTCAATGGACCAATTCAGA-CCCCAGCGCTCCAGAAAGTACCTCTGCTTCCTGCCACCATTCCACTCT-------------GGCCAAACAGCCT-CTACTCTCTTCTG--
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18851304 377 - 121039945 CATTAAAAGCCCCTCTTCAACTGCCG-CCCCCCCCCCCCACCACCTCCAAGACAGATATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGAAAAA-GGAGATAAGGAGGTGTGGGGGAAGCAGCGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCCAGGCCTCAGAGGCCTCTGTTGGGGT-G-GGGGCCTCCCTGG-CTATGCGC-TTCAGCAGCACAAGGCAGCCTCTATGAGCTTCTCCT-GCTCAGCCCTACAGGAAGCAGCAGGGCCCAG--CCTCAATGGACCCATTCAGA-CCCCAGCGCTCCGGAAAGTACCTCTGCTTCCTGCCACCATTCCACTCT-------------GGCCAAACAGGCT-CTACTGTCTTctg--
i nomLeu3.chr6              M 5913 I 10347
s rheMac3.chr7              116075632 374 - 170124641 CATTCAAAGCCCCTCTTCAAAT---GCCCCCCATCCCCCACCACCTCCAAGACAGGGATTCTGGGTTTTTGCAACTGCAGCCCCTCAGAGAGCGTAAAAGGGGCAGAAAAATGGAGACTGGGAG--GTGGGTGAAGTGGTGCTGTCAGAGTTTCCAAAGCCCTGG--AGCAAGGCCTCAGAGGCCTCTGTTGGGAT-G-GGGGGCTGCCTGG-CTATGCGC-TCCAGCAGCACAAGACAGCCTGTGTGAGCCCCTCCC-ACTCAGCCCCACAGGAAGTAGCAGGGTCCAGCCCCTCAATGGACCCATTCAGA-CCCCAGCGCTCTGGAAAGTACCTCTGCTTCCTGCCACCCTCCCACTCT-------------AGCCAAACAGGCT-CTACTGTCTTCTG--
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106510326 372 - 171882078 CATTCAAAGCCCCTCTTCAACT---G-CCCCCGCCCCTCACCACCTCCAAGACACAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGACAAA-GGAGATCAGAAG--GTGGGGGAAGCGGCGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGGT-G-GGGTCCTGACTGG-CTATGCAA-TCCAGCAGCACAAGGCAGCC--TCTGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAGTGGACCCATTCAGA-CCTCAGCGCTCTGGAAAGTACCTCTGTTTCTTGCCACCGTTCCACTCT-------------GGCCAAACAGGCT-CTTCTCTCTTCTG--
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102471662 372 - 162156779 CATTCAAAGCCCCTCTTCAACT---G-CCCCCGCCCCTCACCACCTCCAAGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGACAAA----GATCAGAAG--GTGGGGGAAGCGGCGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGTGT-G-GGGTCCTGACTGG-CTGTGCAA-TCCAGCAGCACAAGGCAGCCTCTGTGAGCCCCTCCC-ACTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAGTGGACCCATTCAGACCCCCAGCGCTCTGGAAAGTACCTCTGTTTCTTGCCACTGTTCCACTCT-------------GGCCAAACAggct-cttctctcttctg--
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7705851 376 +  58131712 CATTCAAAGCCCCTCTTCAAAT---GCCCCCCATCCCCCACCACCTCCAAGACAGGGATTCTGGGTTTTTGCAACTGCAGCCCCTCAGAGAGTGTAAAAGGGGCAGAAAAATGGAGACTGGGAG--GTGGGTGAAGTGGTGCTGTCTGAGTTTCCAAAGCCGTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGAT-G-GGGGGCTGCCTGG-CTATGCGC-TCCAGCAGCACAAGACAGCCTGTGTGAGCCCCTTCC-ACTCAGCCCCACAGGAAGTAGGAGGGTCCAGCCCCTCAATGGACCCATTCAGA-CCCCAGCACTCTGGAAAGTACCTCTGCTTCCTGCCACCCTCCCACTCT-------------AGCCAAACAGGCT-CTACTGTCTTCTG--
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114223570 363 - 132174527 CATATGAAGCCCCTCTTCAACT---G-------CCCCCCACCACCTCCAAG----GGATTCTGGGTTCTTGCAACTGCAGTCCCTCAGAGACAGTAAGAAGGGCAGAAAAA-GGAGACCAGGAA--A-GAGGGGAGTAGCACTGTCAGAGTTTCCAAAGCTCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGAT-G-GGGGGCTGCCTGG-CTATGCAC-TCCAGCAGCACAAGGCAGCCTGTGTGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAATGGACCCATTCAGA-CGCCAGCACTGTGGAGAGTACCTCTGCTTCCTGCCACCCTCCCACTCT-------------GACCAAACAGGCT-CTACTCTCTCCCG--
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881515 340 + 124595110 TATTTGAAGGTCCTCTCCAACT---G-------CCCCCTACC----TAATGACAGCAATTCTG----------AATGCATCCTGTCAGA-AGGGTGAGTGGAGCACAAGTATGGAGGT---GAG--GTGGGG------GTACTGTCAGAGTTTCCAAAGCCCCAGCCAGCTTGGCTTCAGAGGCCTCTGTTCTGACAA-GGGGGCTGCCTGGCCTGCACAC-TCCAACAACACAAGGCAGCCAGTGTGAGTGCCTCT--------CCACACAGGAAACAGCAGGGCCCAGTCCCTCAAAGGGCTCATTCAGA-CCCCAGCTCTCTGGAAAGTACCTCTGCTTCCTGCCACCCTCCCACT-T-------------AGTCAAACAGGCTGCTGCTCTCTCCTG--
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1731066 375 -  40214260 CACTCACAGCTCGTCTCCAGCT---G-------TCTC---------CCAGGACCGGGGTTCTGGGTCCTTGCAGCTGCGGCCCATCAGAGACGGC--GAGGGGCAGCAGCA-GGAGACCGGGAC--GTGGGGGGAACGGCGCTGTCAGAGTTTCCAGAACCCTGGCCAGCGAGGCCTCAGAGGCCTCTGTTAGGAC-GAGGGGGCCGCCTGGCCTGTGCACTTCCAGCCGCACAAGGCGGCTTGTGTGAGCGCGTCCCTGCCCAGGCCCACAGGAAACGGCAGGGCCCAGCCCCTCAATAGGCTCATTCAGA-CCCCAGCTCTCTGGAAAGTACCTCTACTTCCTGCCACCCTCCCACTCCGCCTGGAGGACAAGGCTAAACAGGC--CGGCCCTCTCCTCTT
i canFam3.chr30             C 0 C 0
e panTro4.chr15              80015810 37738 +  99548318 M

a score=198179.000000
s hg38.chr15_KI270850v1_alt    245874 94 +    430880 ATGGGAGGAGGCCGCAGGCAGGTGGTTCAGTGGTTAGGGCCAACCATCTACTTCAGTTCCTGTCTGGCCCAGATCTCTGACCT----TGACCATGCCC
s ponAbe2.chr15              80105056 94 +  99152023 CTGGGAGGGGGCCACAGGCAGGTGGTTCAGTGGTCAGGGCCAACCATCTACTTCAGTTCCTGTCTGGCCCGGATCCCTGATGT----TGACCATGCCC
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116076006 94 - 170124641 CTGGGAGGGGGCTGCAGGCAGGTGGTTCAGTGGTTAGGGCCAACCATCTAATTCAGTTCCTGTCTGGCCCAGAGCCCTGACAT----TGACCAAGCCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106510698 94 - 171882078 CTGGGAGGGGGCTGCAGGCAGATGGTTCAGTGGTTAGAGCCAACCACCTCCTTCAGTTCCTGTTTGGCCTAGATTCCTGACGT----TGACCATGCCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472034 94 - 162156779 ctggGAGGGGGCTGCAGGCAGATGGTTCAGTGGTTACAGCCAACCGTCTCCTTCAGTTCCTGTTTGGCCCAGATTCCTGACGT----TGACCATGCCC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7706227 94 +  58131712 CTGGAAGGGGGCTGCAGGCAGGTGGTTCAGTGGTTAGGGCCAACCATCTAGTTCCTTCCTGGCCTGGCCCAGAGCCCTGACAT----TGACCAAGCCT
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114223933 94 - 132174527 CTGGGAGGGGGTTGCGGGCAGGTGGTTCAGTGGTTAGGGCCAACCAGCTACTTCAGTTCCTGTCTGGTCCAGAGTCCTGACAT----TGGCCATGTCC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881855 84 + 124595110 TGGGAAGGGAGCAAGAGGCAGGTGGTTCAGTGGTTAGGGCCAGCCGTGCACCTTAGT----GCCTGACCCAGAGCCCTGC----------CTAACACT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1731441 97 -  40214260 CTGCGAGGGGGCTAGGGGCAGGTGGTTCAGGGGTTAGAGCCAGCCAGCGCCTTCACTTCCGGCCTGGTACGG-GCCCTGAGGCCCTATGACGATGTCC
i canFam3.chr30             C 0 I 63
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=47547.000000
s hg38.chr15_KI270850v1_alt    245968 30 +    430880 TAGTGGGTGTATGTATACCTTTAGTGCAAG
s ponAbe2.chr15              80105150 30 +  99152023 TAGCGGGTGTATGTATACCTTTAGTGCAAG
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116076100 30 - 170124641 TGGCTGGTCTACATATGCCTTTAGTGCAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106510792 30 - 171882078 TAGTGGGTGTACATATACCTTTAGTGCAAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472128 30 - 162156779 TAGTGGGTGTACATATACCTTTAGTGCAAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7706321 30 +  58131712 TGGCTGGTCTACATATGCCTTTAGCACAAG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114224027 30 - 132174527 TGGAGGGTCTACATATACCTTTAGTTCAAG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881939 20 + 124595110 TAGC----------ATACCTTCTGGGCAAG
i mm10.chr9                 C 0 C 0
e canFam3.chr30               1731538 63 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=16323.000000
s hg38.chr15_KI270850v1_alt    245998 9 +    430880 GGTGGtgtg
s ponAbe2.chr15              80105180 9 +  99152023 GGTGGtgtg
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116076130 9 - 170124641 GGTGGtgtg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106510822 9 - 171882078 GGTGGtgtg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472158 9 - 162156779 ggtggtgtg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7706351 9 +  58131712 GGTGGtgtg
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  56881959 8 + 124595110 -GGGGTGTG
i mm10.chr9                 C 0 I 19
e calJac3.chr10             114224057 0 - 132174527 C
e canFam3.chr30               1731538 63 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=522533.000000
s hg38.chr15_KI270850v1_alt    246007 566 +    430880 acagttaatactgagtgtcaacttgattgggttgaaggctgcaaagtattgacctactggaagtgtctgtgagggcattgtaaaaggagataaacatttgagtcagtgggctggggaaggcagacccacctttaatactggtgggtaccatctttctaatcagctgctagcgaatataaagcaggcagaaaaacatgaaaaggtaagattggcctagcttcccagcctacatctttctcccatgctggacacttcc-tgccctctaacatcggactccaggttcttcagttttgagactcggattggctctccttgctcctcaaacttgcagacagcctattgtgggaccttgtgattgtgtaagttaatacttcataaactcccctttatatatctatctatatctatatctattatctatatctatatctatatctattatctatatctatatctatatctatatctatatctatatctatatctatatctatatctatatctatatctatatctgtctatatctcctattagttctgtccctctagggaaccctgattaacaca
s ponAbe2.chr15              80105189 469 +  99152023 atgattaataccgagtgtcaacttgattcggttgaaggctgcaaagtattgatctcctgggtgtgtctgtgagggcattgtaaaaggagattaacatttgagtcagtgggctggggaaggcagacccacctttaatactggtgggcaccatctttctaatcagttgctagcaaatataaagcaggcagaaaaacgtgaaaaggcgagactggcctagcctcccagcctacatctttctcccatgctggacgcttccgtgctctctagcatcggactccaagttcttcagttttgagactcggattggctctccttgctcctcaaacttgcagacagcctattgtggaaccttgtgattgtgtaagttaatacttgataaactccccttta------------------------------------------------------------------------------------------------tatatctatatctatatctat--ctatatctgtctgtatctcctattagttctgtccctctagggaaccctgactaacaca
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116076139 554 - 170124641 atagttaatactgactgtcaacttgattgggttgaagggtgcaaagtattgatcc--tgggtgtgtctgcgagggtgttgccaaaggaggttaacatttgagtcagtgggctggggaaggcagacccacccttcatactggtgggcacca----tctgatcagctgccagcgaatataaagcaggcagaaaaatgtgaaaatgcgagactggcccagcctcccagcctacatctttctcccaggctggacatgtcc-tcccctctaacattggactcgaagttcttcagttttgggactcagactgggtctccttgctcctcaagcttgcagacagcctattgagggaccttgtgattgtgcaagttagtacttaataaattcccctttatatatctatatctatatctg-----tatctatatctgtatctgtatctg-tatctatatctatgtctacatctatatctacatctatgtctacatctatatctgcatctatatctacatctatatctatatctatctcctataacttctgtccctctagagaaccctgactaacaca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106510831 488 - 171882078 atggttaatactgagtgtcaacttgattgggttgaaggctgcaaagtattgatcccttgggtgtgtctgtgagggtgttgtaaaaggagactaacatttgagtcagtgggctggggaaggcaaacccacccttaatactggtgggcacca----tctaatgagctgccagtgaatataaagcaggcagaaaaatgtgaaaaggcaagactggaccagcctcccagcctacatctttctcccctgctggatgcttcc-tgccctctaacatcggactccaagttcttgagttttgagactccgactggctcttcttgctcctcaaacttgcagacagcctattgtgggactgtgtaattgtgtaagttaatatttaataaactcccctttctatctatctatctatctatc-----tatctatctatctatct---------------------------------------------------------------atctatatctatacctatatctata--tatctctta----ttctatccctctagggaaccctgactagcaca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472167 484 - 162156779 atggttaatactgagtgtcaacttgattgggttgaaggctgcaaagtattgatcccttgggtgtgtctgtgagggtgttgtaaaaggagactaacatttgagtcagtgggctggggaaggcaaaCCCACCCTTAAtactggtgggcacca----tctaatgagctgccagtgaatataaagcaggcagaaaaatgtgaaaaggcaagACTGGagcagcctcccagcctacatctttctcccctgctggatgcttcc-tgccctctaacatcggactccaagttcttgaGTTTTGAGACTCGGACTGACTCTTCTTGCTCCTCaaacttgcagacagcctattttGGGACCgtgtgattgtgtaagttaatatttaataaactcccctttctatctatctatctatc---------tatctatctatctatct---------------------------------------------------------------atctatatctatacctatatctata--tatctctta----ttctatgcctctagggaaccctgactagCACA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7706360 512 +  58131712 atagttaatactgactgtcaacttgattgggttgaagggtgcaaagtattgatcc--tgggtgtgtctgcgagggtgttgccaaaggagattaacatttgactcagtgggctggggaaggcagacccacccttcatactggtgggcacca----tctgatcatctgtcagcaaatataaagcaggcagaaaaatgtgaaaatgcgagactggcccagcctcccagcctacatctttctcccatgctggacatgtcc-tcccctctaacattggactcgaagttcttcagttttgggactcagactgggtctccttgctcctcaagcttgcagacagcctattgagggaccttgtgattgttcaagttagtacttaataaattcccctttatatatctatatctatatcta-----tatctatatctatatct-------------------------------------------gtatctgtatctatatctatatctacatctatatctatatctatatctatctcctataacttctgtccctctagggaaccctgattaacaca
i chlSab2.chr26             C 0 C 0
e mm10.chr9                  56881967  19 + 124595110 I
e calJac3.chr10             114224057   0 - 132174527 C
e canFam3.chr30               1731538  63 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=20891.000000
s hg38.chr15_KI270850v1_alt    246573 13 +    430880 GGTGGGTAGGCAC
s ponAbe2.chr15              80105658 13 +  99152023 GGTGATTAGGCAC
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116076693 13 - 170124641 GGTGGGTAGGCGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106511319 13 - 171882078 GGTGGGTAGGCAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472651 13 - 162156779 GGTGGGTAGGCAC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7706872 13 +  58131712 GGTGGGTAGGCTC
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114224057 13 - 132174527 GGTGGGTAGGGGC
i calJac3.chr10             C 0 C 0
e mm10.chr9                  56881967 19 + 124595110 I
e canFam3.chr30               1731538 63 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=4431.000000
s hg38.chr15_KI270850v1_alt    246586 2 +    430880 AG
s ponAbe2.chr15              80105671 2 +  99152023 AG
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116076706 2 - 170124641 AG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106511332 2 - 171882078 AG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472664 2 - 162156779 AG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7706885 2 +  58131712 AG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114224070 2 - 132174527 AG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881986 2 + 124595110 AA
i mm10.chr9                 I 19 C 0
e canFam3.chr30               1731538 63 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=562898.000000
s hg38.chr15_KI270850v1_alt    246588 269 +    430880 GGAGATGTGCCCCCTTCCCCGTGGgtgctgggtaggtaaatgtttcgcaaagggctttgttggggagagggaaccctgattttcagtatttgcctcttttcctggtataaatattcccactgtgggcagtatcacctgcctctcaaaattcctgaaaattcaacagttggctcctggcagctgctgtgagccgttccagcCGGTGACTGTGGTGGCTCCATCCTGCAGG-GCCATGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCACT
s ponAbe2.chr15              80105673 251 +  99152023 GGAGATGTGCCCCCTTCCCCGTGGgtgctgggtaggtaaatgtttagcagtgggctttcttggggagagggaaccctgattttcagtatttgcctcttttcctggtataaatgttcccactgcgggcagtatcaCCTGCCTCTCAA-----------------CAGTTGGCTCCTGGCCGCTGCCGTGAGCTGTTCCAGCGGGTGACAGTGGTGGCTCCGTCCTGCAGG--CCACGCGCCCCCACCCCTTGTGCCACGGCCTCCCTCACT
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116076708 269 - 170124641 GGAGATGTGCCCTTTTCCCCATGGgtgctgggtaggtaaatgtttagcaatgggctttcttggggagggggaaccctgatttgcagtatttgcctcttttcctggtataaatattctcactatgggcagtatcacctggctctcaaaattcctgaacattcaacagttggctcctgacagctgctgtgagccgctccagcCGGTGGCGGTGGTGGCTCCATCCTGCAGG-GCCGTGTGCCCCCACCCCTTGTGCTATGTACGTCCTCACT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106511334 269 - 171882078 GGAGATGTGTCCCCTTCCCCATGGgtgctgggtaggtaaatgtttagcagtgggctttcttggggagagggaaccctgattttcagtatttgcctctttgcctggtgtaaatattcccactgtgggcagtctcacctggctctcaaaattcctgaaaatgcaacagttggctcctggcagctgctgtgagctattccagcCGGTGACGGTGGTGGCTCCATCCTGCAGG-GCCATGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCCCT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472666 269 - 162156779 GGAGATGTGTCCCCTTCCCCATGGGTGCTGGGTAGGTAAATGTTTAGCAGTGGGCTTTCTTGGGGAGAGGGAACCCTGATTTTCAGTATTTGCCTCTTTGCCTGGTATAAATATTCCCACTGTGGGCAGTCTCACCTGGCTctcaaaattcctgaaaatgcaACAGTTGGCTCCTGGCAGCTGCTGTGAGCTATTCCAGCCAGTGACGGTGGTGGCTCCATCCTGCAGG-GCCATGCGTCCCCACCCCTTGTGCTATGGCCTCCCTCCCT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7706887 269 +  58131712 GGAGACGTGCCCTCTTCCCCGTGGgtgctgggtaggtaaatgtttagcaatgggctttcttggggagggggaacccttatttacagtgtttgcctcttttcctggtataaatattctcactatgggcagtatcacccggctctcaaaattcctgaacattcaacagttggctcctggcagctgctgtgagccgctccagcCGGTGGCAGTGGTAGCTCCATCCTGCAGG-GCCGTGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCACT
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114224072 270 - 132174527 GGACATGTGCCCCCTTCCCCGTGGGCGCtgggcaggtaaatgtttagaagtgggctattggggagagggggatccctgatttgcaatatttgcctcttttcctggcataaatattctcactgtggGCAGtaccacctgactctcaaaattcctgaaaattcaacagtgggctcctggcacctgctgtgagccgctccagcCGGTGCCAGGGGTGGCTCCATCCTGCAGGGGCCATGTGCCCCCACCCCCTGTGTGACGGCCTCCCTCACT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56881988 225 + 124595110 GGGACTGTGCCCTCTTCCTTGTGGGTGGTGAGCAGCCCAG---------------------------------CCCCGGGTTGAAATGTTTACCTCTTTGCGGGATATAAATATTCTCAGAGTGGGCAGTATCACCTGGCCCACAAAATCCCTG-----------TTCGGCTCTTGCCAGCTGCTCCAAGCCACTCCAGCCCACCAGGGTGGTGGCTCCATCCTGTGGGGGTCGTGTG-CCCCACCCTCTGTTCCGTGGCTGCCCGTGGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1731601 260 -  40214260 GGAGAGGAGCCCC--TCCCCGTGCACCCT-AACAggtaaaggttgagcaacaggctttctgggagaaagggaaccccgatttgtagcacttgcctcttc-cagggtataaatactgccac--cCGGCCACATCGCCCGGAGGgccaaactcctgcaaagttaacactcagctcttgccagccgctgtgagc---TCCGGCCTGCCCTGGTGAT-GCTCCATCCTGAGGAGGCCACGCGTCCTCCCCTTCTGTCCTGGGGCTGCCCTCAGT
i canFam3.chr30             I 63 I 225
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=35446.000000
s hg38.chr15_KI270850v1_alt    246857 23 +    430880 TTAGTGTGCTGTGTTTTGCTCTT
s ponAbe2.chr15              80105924 20 +  99152023 TTAGTGTGCTGT---TTGCTCTT
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116076977 23 - 170124641 TTAGTGTGCTGTGTTTTGCTCTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106511603 23 - 171882078 TTAGTGTGCTGTGTTTCGCTCTG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472935 23 - 162156779 TTAGTGTGCTGTGTTTCGCTCTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7707156 23 +  58131712 TTAGTGTGCTGTGTTTTGCTCTA
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114224342 18 - 132174527 T-----TGCTGTGTTTTGCTCTT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56882213 23 + 124595110 TTGGCCTCCTGCATTTTGCTCAA
i mm10.chr9                 C 0 C 0
e canFam3.chr30               1731861 225 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=764374.000000
s hg38.chr15_KI270850v1_alt    246880 445 +    430880 AGGAATCAATGTCTTTGCAGATAAGGCA-CCCCAGTAGCTGGCCGCCACCT-----GCAGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGACTGCTGGGCCACCCCCGTGCAGAT-----GG-TCTGCGGGGCTTGCTTGATTCCCTTAGCTTCCCAGCCAAGGTGCTGGTGTTGCCAG-CAGT----GCTGGCAGGAGGAGGGGATAACTAGAGGGGATTT-AACTCAACCCGAGGGGCTCTTACGGGATCTTTCCTGGATATCCCTCCAGGTGGGACTGGCTGCCCTGAGGGTATACAAACCTCCAACTCCTCCAATGGCTGAAGCTACTTCCTCGAGCAGATGGCAGCTGGCTCAGGCTGGCTAGGGACCAGTGCATGTGAGGTCGGTGCTGGATCA-CCCCATCAAGGCCATCAGCCTGTGCTT-GTTCTTGGGGTTTGAGG
s ponAbe2.chr15              80105944 447 +  99152023 GGGAATCAATGTCTTTGCAGATAAGGCA-CCCCAGTAG---GCCGCCACCT-----GCAGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGCCTGCTGGGCCACCCCCGCGCAGATCAGATGG-TCTGTGGGGCTTACTTGATTCCCTTAGCTTCCCAGACAGGGTGCTGGTGTTGCCAG-CAGT----GCTGGCAGGAGAAGGGGATAACTAGAGGGGATTT-AAATCAACCCGAGGGGCTCTTACGGGATCTTTCCTGGATATCCCTCCAGGGGGGGCTGGCTGCCCTTAGGGTGTACAAACCTCCAACTCCTCCAATGGCTGAAGCTACTTCCTCAAGCAGATGGCAGCTGGCTCAGGCTGGCCAGGGACCAGTGCATGTGAGGCTGGTGCTGGATCA-CCCCATCAAGGCCATCAGCCTGTGCTT-GTTCTTGGGGTTTGAGT
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116077000 442 - 170124641 AGGAATCAATGTCTTTGCAGATAAGGCA-CCCCGGTAGGTGGCCGCCACCT-----GCAGTTCCCTGGTCTGCCCCTTGCTGGTACCGA---------------------------------------------------------------------------------GCTGTGCTGGGCCTGCTGAGCCTGCTGGGCCGCCTCCATGCAGAT-----GG-TCTGCAGGGCTCGCTTGATTCTCTTAGCTTCCCAGACAAGGTGCTGGTGTTGCCAG-CAGT----ACTGGCAGGAGGA---GATAACTAGAGGGGATTT-AACTCAGCCCAAGGGGTTTTTAC-GGATCTTTCTTGGACATCCTTCCCAGTGGGGCTGGCTGCCCTTAGGGTGTACAAATCTCCGACTCCTCCAATGGCTGAAGCTGCTTTCTCAGGCGGATGGCAGCTGGCTCAGGCTGGCCAGGGACCAGCGCATGTGGGGCTGGTGCTGGATCATCCCCATCAAGGCCGTCAGCCTGTGCTT-GCTCTCGGGGTTTGAGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106511626 446 - 171882078 AGGAATCAATGTCTTTGCAGATAAGGCA-CCCCAGTAGGTGGCCGCCACCT-----GCAGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------gctgtgctgtgcttgctgagcctgctgcgcCGCCCCCACGCAGAT-----GG-TCTGCGGGGCTTACTTGATTCCCTTAGCTTCCCAGACATGG---TGGTGTTGCCAG-CAGTGCCCACCGGCAGGAGGAGGGGATAACTACAGGGGATTT-AACTCAGCCCGAGGGGCTCTTACGGGATCTTTCCTGGACATCTCTCTAGGTGGGGTCGGCTGCCCTTAGGGCGTAGAAATCTCCAGCTCCTCCAATGGCTGAAGCTACTTCCTGGAACAGATGACAGCTGGCTCAGGCTGGCCAGGGACCAGCACATGTGAGGCCAGTACTGGATCA-CCCTATCAAGGCCATCAGCCTGTGCTT-GTTCTTGGGGTTTGAGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102472958 441 - 162156779 AGGAATCAATGTCTTTGCAGATAAGGCA-CCCCAGTAGGTGGCCACCACCT-----GCAGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGCCTGCCGCGCCGCCCCCACGCAGAT-----GG-TCTGTGGGGCTTACTTGATTCCCTTAGCTTCCCAGACACGG---TGATGTTGCCAG-CAGTGCCCACCGGCAGGAGGATGGGATAACTACCGGGGATTT-AACTCAGCCCGAGGGGCTCTTATGGGATCTTTCCTGGACATCTCTCTAGGTGGGGCCGGCTGCCCTTAGGGCGTAGAAATCTCCAGCTCCTCCAATGGCTGAAGCTACTTCCTCGAACAGATGACAGCTGGCTCA-GCTGGCCAGGGACCAGCACATGTGAGGC-AGTACTGGATCA-CCCTATCAGG--CATCAG-CTGTGCTT-GTTCTTGGGGTTTGAGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7707179 441 +  58131712 AGGAATCAATGTCTTTGCAGATAAGGCA-CCCCGGTAGGTGGCCGCCACCT-----GCAGTTCCGTGGTCTGTCCCTTGCTGGTACCGA---------------------------------------------------------------------------------GCTGTGCTGGGCCTGCTGAGCCTGCTGGGCCACCTCCATGCAGAT-----GG-TCTGCAGGGCTCTCTTGATTCCCTTAGCTTCCCAGACAAGGTGCTGGTGTTGCCAG-CAGT----GCTGGCAGGAGGA---GATAACTAGAGGGGATTT-AACTCAGCCCAAGGGGTTTTTAC-GGATCTTTCTTGGACATCCTTCCTGGTGGGGCTGGCTGCCCTTAGGGTGTACAAATCTCCGACTCCTCCAATGGCTGAAGCTGCTATCTCAGGCCGATGGCAGCTGGCTCAGGCTGGCCAGGGACGAGCCCATGTGGGGCGGGTGCTGGACCA-CCCCATCAAGGCCGTCAGCCTGTGCTT-GCTCTCGGGGTTTGAGG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114224360 422 - 132174527 AGGAATCAATGTCTTTGCAGATAAGGCA-CCCCTGTAGGTGGCCACCACCT-----GCAGTTCCCTGGTCTGTCCCTTGCTGGCACCGA---------------------------------------------------------------------------------GCTGTGCGGGGCCTGCTGAGCCTGCTGGGCCGCCCCCAGGCAGAT-----GG-GCTGCAGTGCTCGCTCAATCCCCTTCGCTCCCTAGACAGGGTGCTGGTGCCGCCAG-CAGT----GCTTGCAGGAGGA---GATAACTAGAGGGGACTT-AACTCAGCCCAGGGGGTTCTTACAGGATCTTTCCTGGACATCTCTCT---------------------GGGCACACGAGTCTCCAACTTCTGCAATGGCTGAAGCTACTTCCTGGGGCGGATGGCAGCTGGCTCAGGCCGGCCAGGGACCAGCACATGTGGGGCCAGGGCCAGACCACCCCTATCAAGGCCATCAGCCTTTGCTC-GCTCTGGGGGTTTGAGG
i calJac3.chr10             C 0 M 1212
s mm10.chr9                  56882236 349 + 124595110 ----------------GCAGACACGGCACCCCCTACAAGCTCCTACTGCTTGCTGAGCAGTGTCCCGGTCTGAGGTTCCACGACA-CAA---------------------------------------------------------------------------------GATGTGCTGGGCCCACAGAGCC-------------CTGGGCAAGT-----GG-CTTT--GTGCTCATGACATCCTTTTAACT------------------------CAG-GAGT-----------------------CACTAGGGAGGATTTCAGCTCAGCCCTGAGAAC---AGCATTATCTTTCTTGGCCATCTCTCC-------------------TGGGACAGAAAAGGTGCAGACCCCTGCAGTGGCTGATGCTGCTCTGTC------ATGTCAGCTGGCTTGGGCTGGCCGGGGCCCAGCACTAGTGTGACTGATGCCAGAACATCTTTGTCAGAGCCATCAGCCTGACTGT-CCTCTGCAATTTCAAA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1732086 449 -  40214260 AGGAATCAATGCTTTTGCAGATGAGGTG-CCC----------ACCCCATAT-----CCA-TTCTCTGGTCTGCCCCTCACTGGCACCGAGGTctgctgggcctggtggttctgctgggcctggtggttctgctgggtctgctgggcctgctgggtctgctgggcctggtggttctgctgggcctgccgggcctgctggCCCATACCCACCCAGAC-----GGTTTTGTAGCTCTCATTCGATTCCTTTACCCTGTCAGACCAGGTTCTGGCGTCGCCAGCCACT----GCTGGCCAGAGG----GCTAACTGGAGGGATTTC-AGCTCAGCCCAAAAGGA-AGAGCATGATCTTTCTTGGCCATCCCCTG-------------------------------------GAATCCTCCGGTGGCAGCCAGTGCCGCCTC-----------------CTCA----GGCCAGGGACCAGTGCGAATGTGGCTGGCGCCAGGTCATCCCCAGCAAGGCCATCAGCCTACACACAGTGCTCAGGG-------
i canFam3.chr30             I 225 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=14037.000000
s hg38.chr15_KI270850v1_alt    247325 7 +    430880 GAAACCC
s ponAbe2.chr15              80106391 7 +  99152023 GAAACCC
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116077442 7 - 170124641 GAAACCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106512072 7 - 171882078 GAAACTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102473399 7 - 162156779 GAAACTC
i papAnu2.chr7              C 0 I 9247
s chlSab2.chr26               7707620 7 +  58131712 GAAACCC
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  56882585 7 + 124595110 GAGGCCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1732535 7 -  40214260 GAAGCCC
i canFam3.chr30             C 0 C 0
e calJac3.chr10             114224782 1212 - 132174527 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=44740.000000
s hg38.chr15_KI270850v1_alt    247332 45 +    430880 AACAGGGATGAATCACAGTTTTTAACCTGTGTTTGTCTGCCCCCC
s ponAbe2.chr15              80106398 45 +  99152023 AACAGGGATGAATCACGGTTTTTAACCTATGTTTGTCTGCCCCCC
i ponAbe2.chr15             C 0 I 581
s rheMac3.chr7              116077449 45 - 170124641 AAGAGGGATGAATCACCGTTTTTAACCCGTGTTTGTCTGTCCCCG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106512079 45 - 171882078 AACAGGGATGAATCACGGTTTTTAACCTGTGTTTTTCTGCCCCCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7707627 45 +  58131712 AACAGGGATGAATCACCGTTTTTAACCCGTGTTTGTCTGTCCCCG
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  56882592 39 + 124595110 GACTGGGATGAGTCTCCTTTTCT--CCTG---CCATCTTTCCCC-
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1732542 44 -  40214260 CACAGAGACGAATCACC-TTTTTAACCCATTCCAGTCTCCCGTCT
i canFam3.chr30             C 0 I 5
e calJac3.chr10             114224782 1212 - 132174527 M
e papAnu2.chr7              102473406 9247 - 162156779 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=1152067.000000
s hg38.chr15_KI270850v1_alt    247377 1074 +    430880 AGCCCTGGACATCT-GCAGGCAAAGTTAAAGTTATATTTGGCTCTTATCACCGCAAAAGGCATAGACCAGAAATTATG--GCATCGGGTTGGAAGTCAGG-GAGGCTAATTTGGGGAAACTGCCT---GGAGGAAGCAGCAACTC-AAAAGAGGAGGAGTCCCAGTGTGGGACAGAACAGGCCCTGCATAAGAACCACTAATCCCAGGCAAGCCCAGACATGGCCTTCTGCCTGGGGAGGCCCTCTTTGGCCTGCTCAGCAGACCCTCAGCCCCTTCTAGGCCCTGTCTT------CAGCCTCAGACTGAGTGGTGGCCTGGGGAGGTTGGGAGCTGAGCTGTTCTCATCCCTGGTTCCTTGGCCACG-GTGGAAACAATGGGGCCGGATCTGACTGCTCAGCGGGGACTGTGAATAGCTCTCTAGCAGGAAGCAACAGCAGGGGTAGTGGAGGAAGTGTGGGCCCACTTTG-GTTTGACACTGCATATGGTCCCCATCTGGCCTGAGAGCCTTTACTCCTTGGCAAACTCAGGCCAATAAGC--TCCTGC----CCCCACCCTCAATGGCAGCTGGAAGAATGGCCTGAGGGAGAAGCAGGGATAGGTGGGCTGCA----CTGACATCACCCCCAGATCCCAGCCGTGGCCCCAGCCAACCCATGGAGGTGGGGCATGG-CACGGCAGGTGCTGCACAGGAGCCCAAGCACAAGGGCACTTAGGAGAAGGAATCTGAGCAGGGATCGATCTGGCCTGGTGGTGATTCTCCAGAAACTCCATTCCTCAGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCCAGGTCGGGGAGCCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCAGAGGCCTCTGGCTCCAGGAACCTCCAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCCAAGTCAAGGTCTGGGCTGGACACAAGGTGAGGCTGTGCCTTCTGGTGCCAGGACCAAGGAAATGCTGGGATCTGGGCAGTGCTCAGAGGCAGCACCGTATGGCAGAACCATGAGGGTGCA
s ponAbe2.chr15              80107024 1074 +  99152023 AGCCCTGGACATCT-GCAGGCAAAGTCAAAGTTATATTTGGCTCTTGTCACCACAAAAGGCATGGACCAGAAATTATG--ACAGCGGGTTGGAAGTCAGG-GAGGCTAATTTGGGGAAACTGCCT---GGAGGAAGCAGCAACTC-AAAAGAGGAGGAGTCCCAGTGTGGGACAGAATGGGCCTTGCCTAAGAACGACTAACCCCAGGCAAGCCCAGACATGGCCTTCTGCCTGGGGAGGCCCTCTTTGGCCTGCCCAGCAGACCGTCAGCCCCTCCTAGGCCCTGTCTT------CAGCCTCAGACTGAGTGGTGGCCTGGGGAAGTTGGGAGCTCAGCTGTTCTCATCCCTGGTTCCTTGGCCACG-GTGGAAACAATGGGGCCGGATCTGACTGCTCAGCGGGGACTGTGAATAGCTCTCCAGCAGGAAGCAACAGCAGAGGTAATGGAGGAATTGTGGGCCCACTTTG-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCCTTTGCTCCTTGGCAAACTCAGGCCAATAAGC--TCCCGC----CCCCACCCTCAATGGCAGCTGGAAGAATGGCCTAAGGGAGAAGTGGGGATAGGTGGGCCACA----CTGACACCACCCCCAGATCCCAGCTGTGGCCCCAGCCAATGCATGGAGGCGAGGCATGG-CACGGCAGGTGCTGCACAGGAGCCCAAGCACAAGGGCACTTAGGAGAAGGAATCTGAGCAGGGATCAATCTGGCCTGGGGGTGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCCAGGTCAGGGAGCCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCAGAGACCTCTGGCTCCAGGAACCTCCAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGGTCTGGGCTGGACACAAGGTGAGGTTGTGCCTTCTGGTGCCAGGACCAAGGAAATGCTGCGATCTGGGCAGTGCTCAGAGGCAGCACCATATAGCAGAACCATGAGGGTACA
i ponAbe2.chr15             I 581 C 0
s rheMac3.chr7              116077494 1071 - 170124641 AGCCCTGGACATCT-GCGGGCAAAGTCAAAGTTATATTTGGCTTTTATCACCACAAAAGGCATAGACCAGAAATTGTG--GCAGCGGGTTGGAAGTCAGG-GAGGCTAATCTGGGGAAACTGCCT---GGAGGAAGCAGCAATTC-AAAAGAGGAGGAGTCCCGGTGTGGGACAGAATGGGCCTTGCATAGGAACCACTAACCCCAGGCAAGCCCAGGTATGGCCTTCTGCCTGGCGAGGCCCTCTTTGGTCTGCCCAGCAGACCCTCAGCCGTTCCCAGGCCCTGTCTT------CAGCCTCAGCCTGCGTGGTGGCCTGGGGAAGTTGGGAGCTCAGCTGTTCTCGTCCCTGGTTCCTTGGCCATG-GTGGAAACAATGGGGCCGGATCTGACTGCTCATCGGGGACTGTGAATAGCTCTCCAGCAGGAAGCAATAGCAGGG-TAATGGAGGAAGTGTGGGCCCACTTTG-GTTTGACCCTGCACATGGTCTCCATCTGGCCTCAGAGCCTTTGCTCCTTCTCAGACTCAGTCCAATAAGC--TCCCGC----CCCCACCCTCAATGGCAGCTGGAAGGATGGCCTGAGAGAGAAGCGGGGATAGGTGGGCCATG----CTGACACCTCCACCAGATCCCAGCCGTGGCCCCAGCCAATCCATGGAGGCGGGGCATGG-CACGGCGGGCACTGCACAGGAGCCCAAGCACAAGGGCACTTAGGAGAAGGAATCTGAGCAGGGATCAGTCTGGACTGGGGGTGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCAGCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGG-GGGGTAGGGGACCCAGACCCGGGAGGAAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCAAAGGCCTCTGGCTCCAGGAACCTCTAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGGTCTGG-CTGGACACAAGGTGAGGCTGTGCCTTCTGGTGCCAGGACCAAGAAGATGCTGGGATCCAGGCAGTACTCACAGACAGCACCATATAGCAGAACCATGAGGGTGCG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106512124 1077 - 171882078 AGCCCTGGACATCT-GCAGGCAAAGTCAAAGTTGTATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTATG--GCAGCAGGTTGGAAGTCAGG-GAGGCTGATTTGGGGAAACTGCCTGGAGGAGGAAGCAGCAACTC-AAAAGAGGAGGAGTCCCAGTGTGGGACAGAACAGGCCTTGCATGGGAACCACTAACCCCAGGCAACCCCAGACATGGCCTTCTGTCTGGTGAGGCCTTCTCTGGCCTGCCCTGCAGACCCTCAGCCCCTCCTAGGCCCTGTCTT------CAGCCTCAGCCTGAGTGGTGGCCTGGGGCAGTTGGGAGCTCAGCTGTTCTCATTCCTGGTTCTTTGGCCATG-GTGGAAACAATGGGGCTGGATCTGACTGCTCAGCAGGGACTGTGAATAGCTCTCCAGCAGAAAGCAGTAGCAGGGTTAATGGAGGAAGTGTGGGCCCACTTTG-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCCTTTGCTCCTTGGCAAACTGAGGCCAATAAGC--TCCCAC----CCCCACCCTCAATGGCAGCTGAAAGAATGACCTGATAGAGGAGCGGGGATAGGTGGGCTCCA----CTGAAACCATCCCCAGATCCCAGCCATGGCCCCAGCCAATCCATGGAGGCAGGGCATGG-CACGGCAGGTGCTGCACAGGAGCCCAAGCACAAGGGCACTTAGGAGAAGGAATATCAGCAGGAATCAGTCTGGACTGGGGGTGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCTGGGTCAGGGAGCCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCGGAGGCCTCTGGCTCCAGGAATCTCTAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAGAGTCAAGGTCTGGACTGGATACAAGGTGAGGCTGTGCCTTCTGGTGCCAGGACCAAGGAAATGCTGGGATCTGGGCAGTGCTCAGAGGTAGCACCATATAGCAGAACCATGAGGGTGCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7707672 1071 +  58131712 AGCCCTGGACATCT-GCAGGCAAAGTCAAAGTTATATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTGTG--GCAGCGGGTTGGAAGTCAGG-GAGGCTAATCTGGGGAAACTGCCT---GGAGGAAGCAGCAATTC-AAAAGAGGAGGAGTCCCGGTGTGGGACAGAATGGGCCCTGTATAAGAACCACTAACCCCAGGCAAGCCCAGGCATGGCCTTCTGCCTGGTGAGGCCCTCTTTGGCCTGCCCAGCAGACCCTCAGCCGTTCCCAGGCCCTGTCTT------CAGCCTCCGCCTGCGTGGTGGCCTGGGGAAGTTGGGAGCTCAGCTGTTCTCATCCCTGGTTCCTTGGCCATG-GTGGAAACAATGGGGCTGGATCTGACTGCTCATCGGGGACTGTGAATAGCTCTCCAGCAGGAAGCAATAGCAGGG-TAATGGAGGAAGTGTGGGCCCACTTTG-GTTTGACCCTACACATGGTCTCCATCTGGCCTCAGAGCCTTTGCTCCTTGGCAGACTCAGGCTAATAAGC--TCCCGC----CCTCACCCTCAGTGGCAGGTGGAAGAATGGCCTGAGAGAGAACTGGGGATAGGTGGGCCATG----CTGACACCTCCACCAGATCCCAGCCGTGGCCCCAGCCAACCCATGGATGCGGGGCATGG-CACGGCGGGCACTGCACAGAAGCCCAAGCACAAGGGCACTTAGGAGAAGGAATCTGAGCAGGGATCAGTCTGGACTGGGGATGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGAG-GGGGTAGGGGACCCAGACCCGGGAGGAAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCAATGGCCTCCGGCTCCAGGAACCTCCAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGGTCTGG-CTGGACACAAGGTGAGGCTGTGCCTTCTGGTGCCAGGACGAAGAAGATGCTGGGATCCAGACAGTACTCACAGACAGCACCATATAGCAGAACCATGAGGGTGCG
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  56882631  817 + 124595110 AACACTGGATATCT-GCATGC--AGTCGAGGTTCTA----------ACCACCACAAGA---ATGGGTCAGAAATGGTGGAGAAACTGCTGGAGACTGAAG-AAAGCTAATATTAGGGAACTGCCT---GAAGGA-------------------GGAGGTTCCCACTGTGGTCCAAAGTGG--CCTGCACAGTGCTCACCAACCCTGGGT-AGACCGTATCTGTCCTGATGCCTGAGGAGACCCTC-------------GCAGGCCTGTAGTGCGTCCCCAGCCTTGTATTTGGAGACATCCCTGGCTTGGGT-------TAGGGAAG--GGGATCTCTGCTGCTGTCTTCCCTGGCTCCTTAGGCATGTTTGGAAACAGAGAGGCCGGATGTGAGTACTCACCAGGGACCCGTGGTGGTGCTGAGGCAGGAAGCAATTGCGGAG-TGGTGGAGCACAGTTTGGCCGGCTTTGAGTCTGACACCGCACGTGCTTCCCATC-GGCCTGGGAGCCTTTGCTCCTTGGCAGGCTCTGAGCAATAAACGGCCCCACCCCACCCCGTCCCTACAGGCA-CTAAGAAAAT--------AGAGAA---GAAATGACCTGCCTGCA-----TACCACCACCATCAGGCTCCA----------CAGCAAA-ACACAGAGATAAAGTGCGGTCGTGGCA----------AGGAGCCCA-----------CCCTAGGAGAA-GACTGTGGTCAGGGATCAGCCTTCATTGTGAGAGTCCCCCC--------------------------------CACCAGATGATCATGACAAGA------------TAGG-------GAGAGACCAGATCCAGGATGGACA-TTCGCTGGGGCCCAAAGG--------------TGGCGGGAACCTGTGGCTTCAGGAACCC-----AAGCAAACTTGAATAG-TGGGAATCTTAA----CGAGCCCCT--------------------------------AGGCTGTGCCACATAGAGCCA---------------TGGGG--------------------------------------CATG--------
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1732591  970 -  40214260 AGTCCCGGACCTCTAGGGGACCGAGTCAAAGTTATAATTGGCCCTAATCTCTGCAAAAGGAACAAACCAGAAGTTGTG--GCAGCTGGTCTGAGGTCAAGAGAGGCTAATTTGGGGAAACTGTCT---GGAGGATGTGGCCTCTTAAAAAGAGGTAGTGTCCTGGGGTGGGACCAAAGGGGCCCTGCACAGCCACCACCAGCCACGGAC--------------------------GGAGGCCCTC--TGGCCCTCTCAGCAAACCTCCCACCC-TCCCAGGCCTTGTCTC------TAGCTACAGACCCAG-----GCTGGGAAAAG--------CCAGCTGTAGTCGGCTATGGCTCCCCAGCCATC-GTGGGAACAACAGGGCCGGATCTGACTGCCCCCCAGGGACAATCAGCAGCCTTGCGGCAGGAAGCAATA-CGGCG-TGATGCAGGAAGCTGGGGCCCATTTGG-----GGTCCAGTACGTGGTCTCCATCTGGCCTCAGCGCCTTCGCTCTTTGGTGGACTCGGGCTGGCGA----CTGCAC----CCTTACTC-CAAAGACAGCTGGG-------------AGAGAAGTGGGGACGGGTGGGCTGCCTGTTTCAGCACCACCGCCAGGCCCCGGCCGTGGCCCCAGCCTACCCACAGAGGGAGGGCATGG-CATGGAAAGCGTTGTCCGAGAACCAAAGCAT-GGGGCACT------------------CAGGCATCCGTTTGGGGTAGGGATGATCCTCCTGGAATCCCATTCCTGGGGGCAAAGACCACCAGGCCAGGTGACCCGGCCAGGGATGGTTTTCCATTAGGCCCAA--GAGGAACTCGGCCCAGGATGGAGAATCCTCTGGGGCCCCGGGGAGGAGAGCCAGAGCTGTCAGAGGGCCCAGGCCCCAGGAACTCCTGAGGAGGAAACCTG-GTTGCTTGGAAT----AGGTCTGGCCTCCTTTGGAGCTAAGGCCTGGGATACACACAAGGTGAGACTGCACCTTCCGGCACCAGGACTGGACAGGTGAGGGGG-------------CAGTGCCAGC---------CAGGACCGTGAAGCTGCG
i canFam3.chr30             I 5 C 0
e calJac3.chr10             114224782 1212 - 132174527 M
e papAnu2.chr7              102473406 9247 - 162156779 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=654063.000000
s hg38.chr15_KI270850v1_alt    248451 382 +    430880 CCAGCACGGA-------CCCCTTTC-TGCAA--CCCACCCATCCCTCCCTGCAGCACCTCGCCTCCTCCAGGCAAGAATCTGAGCCTTGACCACAGCTCCCTCTCTCACACAGCTTCCTTCTTTGGTTAGAACCACCCGGAGGTGACTGTGGCCATGGCTCTGACTGACATAGACCTGCAGCTGCAGTTCTCCATGTCCCAACCCGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGACACCTGCAGGTGAGTGACGTCCCCctggga------------ttggggc--gagattccttgtctagctttgagtgaaccccagctggctgt-tgaccttgtgtaagtcac--ttttcttgg-ggtctcaagttctccactg
s ponAbe2.chr15              80108098 380 +  99152023 CCAGCACGGA-------CCCCTTTC-TGCAA--CCCACCCATCCCTCTCTGCAGCACCTCACCTCCTCCAGGCAAGAATCTGCGCCTTGACCACAGCTCCCTCTCTCACACAGCTTCCTTCTTCGGTGATAACCACCTGGAGGTGCCTGTGGCCATGGCTCTGACTGACATAGACCTACAGCTGCAGTTCTCCACGTCCCAGCCCGAAGCCCTCCTTCTCCTGGCAGTAGGCCCAGCTGACCACCTCCTGCTGCAG-----CTCTGGACACCTGCAGGTAAGTGACGTTCCCctggga------------ttggggt--gagattccttgtctagctttgagtgaaccccagctggctgtgtgactttgtgtaagtcacttttttcttgg-ggtctcaagttctcctctg
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116078565 397 - 170124641 CCAGCATGGA-------CCCCTTTC-TTCAA--CCCACCGGTACCTCTTTGTGGCACCTCACCTCCTCCAGGCAAGCATCTGAGCCTGGACCACAGCTCCCTCTCTCACACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGTCCGTGGCCACGGCTCTGACCGACATAGACCTACAGCTGCAGTTCTCCACGTCCCAGCCCGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGACGCCTGCAGGTCAGCGACGTCCCCCTGGGATCcgggcgggattcagggt--gggattccttctctagctttgagtgaaccccagctggctgtgtgaccttgtgtaagtcacttttatcttag-ggtctcaagttctccactg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106513201 381 - 171882078 CCAGCATGAA-------CCCCTTTC-TGCAA--CCCACCCGTCCCTCTCTATGGCACCTCGCCTCCTCCAGGCAAGAATCTGAGCCTTGACCAGAGCTCCCTCTCTCACACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACGGCTCTGACCAACATAGACCTACAGCTGCAGTTCTGCACCTCCCAACCTGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGATGCCTGCAGGTGAGTGATATCCCCctggga------------tgggggt--gagattccttctctagctt----tgaaccccagctggctgtgtgaccttgtgtaagtcacttttatcttgg-ggtctcaagttctccacca
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7708743 389 +  58131712 CCAGCATGGA-------CCCCTTTC-TTCAA--CCCACCGGTACCTCTTTGTGGCACCTCACCTCCTCCAGGCAAGCATCTGAGCCTGGACCACAGCTCCCTCTCTCATACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACAGCTCTGACCGACATAGACCTACAGCTGCAGTTCTCCACGTCCCAGCCCGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTTTTGCTGCAGCTCTACTCTGGACGCCTGCAGGTCAGTGACGTCCCCCTGGGATCTGGGTGGGATTCAGGGT--GGGATTCCTTCTCTAGCTTTGAGTGAACCCCAGCTGGCTGTGGGACCTTGTG--------TTTTATCTTAG-GGTCTCAAGTTCTCCACTG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114225994 386 - 132174527 CCAGCATGGA-------CCCCCTCCTTGCAATTCCATTCGTTCCCTCTCCGCAGCA-CTTGGCTCCTCCAGGCAAGAGTCTGAGCCTTGACCACAGCGCCCTCTCTCATACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACGGCTCTCACCGACATAGA-CTACAGCTGCAGTTCTCCACGTCCCAGCCCGAAGCCCT-CTTCTTTTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGACGCCTGCAGGTCAGTGACATCCCCctggga------------tcaggat--aggtttctttttctagctttgagtgaaccacagctggctgtatgaccttgtgtaggtcacttttatcttggcggtctcaagttctccactg
i calJac3.chr10             M 1212 C 0
s mm10.chr9                  56883448 390 + 124595110 TCAACATAGAAGCCCTTCCCTCCCC-TGTAG--CCCATCTGTCTGTCTCTACGGTCCCTAACCTCCTCCTGGCCGGAGCCTGA-CCTTGACCACAGCTCCCTCTCTCAC-CAGCCTCCTTCTTCGGGGAGAACCACCTGGAGGTGCCCGTGCCCTCAGCTCTGACCAGAGTAGACCTGCTGCTCCAGTTCTCCACATCCCAGCCCGAAGCCCTGCTCCTCTTGGCAGCAGGCCAAGATGACCATCTCTTGCTCCAGCTCCACTCAGGATGCCTCCAGGTGAGTGGCA--CACCCGGGA------------ACAGGGCTAGAGATCCCTTCTGCAGGTTGGGAGGCCTCGCCTTTGGCTGTGCAACCTCATGCAAGTCACCTCTGCCCTTG-GGTCTTGGTTTGTCTGCCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1733561 343 -  40214260 CCAGCACAAA-------ACC------CGCAT--C------------GTCCGCAGCACCTCTCCTCCTCCAGGCAAGGGACTGA--------CCCAGCTCCGTCTCTCACACAGCCTCCTTCTTTGGGGAGAACCACCTGCAGGTGCCGGTGACCACAGCTCTGAGCAACATAGACCTCCGGCTACAATTCTCCACGTCCCAGCCCGAAGCCCTGCTCCTCCTGGCAGCAGGCCAGGCTGACCACCTCCTCCTGCAGCTCCACTCCGGATACCTGCAGGTCAGTGGCCTCTCCCTG---------------CTGGACC-----------CCTCTAGCTTGGCACGGCCCCCAGCCGG-----TGACTTTGTGTGAGCCCCTTTCGCCCCGA-GGTCTCTAGGTCCCTGCCA
i canFam3.chr30             C 0 C 0
e papAnu2.chr7              102473406 9247 - 162156779 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=995779.000000
s hg38.chr15_KI270850v1_alt    248833 547 +    430880 tgggatgggCAGCAGCAGCTCAGAAATGGTAAATCcttcatgaactggctctgcccaccggctccttccaaccatgttt----cccaccacaagccctcactggccctttgtgctctgactgcactgaactgctttcagttcctggccatcttatggtcacttgctgccaggcctt--tggtcatcacact-cctcctgccaggtgtgtgacccac---ccattccctgtacctgccgaactctagtctctccttgaagtttcagtgtgggcat--cccctcctcctcggcgagacccc---------ctcctgg-gcccccatgacCCCTGCGC---ATCCTGGTGGCACTGCACC------AATTTATCTGC--AGCACCA------CTGT-CTGTCCATGAGAGTAACAGCACCAGTACTGCCTCAGCt---tcatttttccatttcatccttcaagacaccacaa-gctttattatcaaggagtcttgtggctcctacttgagtcttaccccataccaggaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtgcagtggcttatgcctat
s ponAbe2.chr15              80108478 539 +  99152023 taggatgggCAGCAGCAGCTCAGAAATGGTAAATCcttcatgaactggctctgcccaccggctccctccaaccacgttt----cccaccacaagccctcgctggccctttgtgctctgactgcactgaactgctttcagttcctggccatcttatggtcacttgctgccaggcctt--tggtcaccacact-ccttctgccaagtgtgtgccccac---ccattccctgcacctgcctaactctagcctctccttgaagtttcagtgtgggcat--cccctcctcctgggcaaggcccc---------ctcctgG-G---------GGCCTGTGC---ATCTTGGTGGCACTGCACC------AATTTCTCTGC--AGCACCA------CTGT-CTGTCCACTACAGTAACAGCACCAGTACTGCCTCAGCT---TCATttttccatttcatccttcaagacaccacaaggctttattatcaaggagtcttgtggatccttcttgagtcttcccccataccatgaagagtttaagaacccagggtcttggtccaaatttggggcaggctgggtgcagtggctcatgcctat
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116078962 548 - 170124641 tgggatgggCAGcagcagcctagaaatggcaaatccttcatgaattggctctgcccactggctccctccaaccatgttt----cccaccacaagcccttgctggccctttgtgctctgaccgcactgaactgctttcagttcccggccatcttacagtcgcttgatgccaggcctt--tggtcaccacact-ccttctgcctggtgc-tgcctcac---ccattccctgcacatgcctaactccagcctctccttaaagtctcagtgtggacat--cccctcctcctgggcgaggcccc---------ctcctgg-gtccccacgacccctgtgc---ttccctgtggcactacacc------aatttctctgc--agcacca------ctgt-CTGTCCACGACAGTAACAgcaccagtactgcctcagcttcctcatttttccatttcatccttcaagacaccacaa-gctttgttagtgaggagtcttgtggctctttcttgagtcttttcccaaaccatgaagag-ttaagaacccagggtcttattccaaatttgtgccaggctgggtacagtggctcatgcctat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106513582 547 - 171882078 tgggatgggCAGCAGCAGCCCAGAAATGGTAAATCcttcctgaactggctctgcccaccagctccctccaaccatgttt----cccaccacaagccctccctggccatttgtgctctgactgcactgaactgctttcagttcctggccatcttatggtcacttgctgccaggcctt--tggtcactacact-gcttctgccaggtgcatgcctcac---tcattccctgcacctgcctaactctagcctgtccttgaagtttcagagtgagcgt--cccctcctcctgggcgaggcccc---------ctcctga-gcccccatgacCCCTGTGC---ATCCCTGTGGCACTGCACC------AATTTCTCTGC--ACTACCA------CTGT-CTGTCCACGACAGTAACAGCACCAGTACTGCCTCAGCt---tcatttttccatttcatccttcaagacaccacaa-gctttattatcaaggagtcttgtggctccttcttgagtcttcccccataccatgaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtgcagtgactcatgcctat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102482653 545 - 162156779 TGGGATGGGCAGCAGCAGCCCAGAAATGGTAAAT-CTTCCTGAACTGGCTCTGCCCACCGGCTCCCTCCAACCATGTTT----CCCACCACAAGCCCTC-CTGGCCATTTGTGCTCTGACTGCACTGAACTGCCTTCAGTTCCTGGCCATCTTATGGTCACTTGCTGCCAGGCCTT--TAGTCACTACACT-GCTTCTGCCAGGTGCGTGCCTCAC---TCATTCCCTGCACCTGCCTAACTCTAGCCTGTCCTTGAAGTTTCAGAGTGAGCGT--CCCCTCCTCCTGGGCGAGGCCCC---------CTCCTGA-GCCCCCATGAACCCTGTGC---ATCCCTGTGGCACTGCACC------AATTTCTCTGC--ACTACCA------CTGT-CTGTCCACAGCAGTAACAGCACCAGTACTGCCTCAgct---tcatttttccatttcatccttCAAGACACCACAA-GCTTTATTATCAAGGAGTTTTGTGGCTCCTTCTTGAGTCTTCCCCCATACCATGAAGAGTTTAAGAACCCAGGGTCTTAGTCCAAATTTGGGGCAGGCTGGGtacaatgactcatgcctat
i papAnu2.chr7              I 9247 C 0
s chlSab2.chr26               7709132 549 +  58131712 TGGGATGGGCAGcagcagcctagaaatggtaaatccttcatgaactggctctgcccactggctccctccaaccacgttt----cccaccacaagcccttgctggccctttgtgctctgaccgcactgaactgctttcagttcccggccatcttacagtcgcttgatgccaggcctt--tggtcactacact-ccttctgccaggtgcgtgcctcac---ccattccctgcacatgcctaactccagcctctccttgaagtctcagtgtggacat--cccctcctcctgggtgaggcccc---------ctcctgg-gtccccaggacCCCTGTGC---ATCCCTGTGGCACTACACC------AATTTCTCTGC--AGCACCA------CTGC-CTGTCCACGACAGTAACAgcaccagtactgcctcagcttcctcctttttccatttcatccttcaagacaccacaa-gctttgttagtgaggagtcttgtggctctttcttgagtcttctcccaaaccatgaagag-ttaagaacccagggtcttattccaaatttgtgccaggctgagtgcagtggctcatgcctat
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114226380 552 - 132174527 tgagatgggCAGCAGCATCCCAGAAATGGTAAATCcttcatgaactggctctgcccgccggctcc-tccagccatgtttcccacccaccacaagccctcgctggccctttgtgctctgactgcactgaactgctttcagtttctggccatcttacagtcacttgctgccaggcctt--tggtcgccacact-tcttctgtcaggtgcatgcctcac---ccattccctgcacctgcctaactcctgcctctccttgaagtctcagtgtgagcat--ccactcctcctgggctaggtcac---------ctcctgg-gcccccaCTACCCCCGTGC---ATCCTGGTGACACTGCACC------AATGTCTCTGC--AGCACCA------CTGT-CTGTCCATGACGGTAACAGCACCAGTACTGCCTCGGCTTCCTCATttccccatttcatccttcaagacaccacaa-gctttgttagcaaggagtcttgtggctctttcttgagtcttcccccaaaccatg-agggtttaagaacccagggtcttactcCAAATCTGGGGCAggctgggtgcagtggctcacacctat
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56883838 483 + 124595110 -TGGGTGGCTAGCAACTTCCCAGA----GTGAGCTCCTGGTGCAGTGGCTCTGCCTACGAGCTGTCTCGGGTCTCACTT----CTCTTCGTCGCCCCTAGTTGACCAT-----------CTGGACTGAGCT-TTCTCTGTCC---ACCTCCTCGTAGTATCTGACTAACAGGCTTTCCTCACTACTACCCTGGCTTTTCTCTTTTGCCTGCCTTTCTTTCTCTTCCCCATGCCTGACCAGTCC---CCTCTCCTTGACATCTATGTGTGAGGAGTATCCCTGCTCCCAGGTAGTATCCCTGTTCTACTCACCTGA-----CTAGGACTCCCCCTC---CCCCCG----------------------TCCTCTGT--AATAAGG------Tggtacaatctgagatagtaacaatgcctttatcatcta-------ccaccaccctcttttgctctt------attgcat-gctttaagaccaaggggtcatttagctgtctcttgagtcttccccctaatcataaaatgtttaggaatccaggatctta-----------------------------ggcttagacccat
i mm10.chr9                 C 0 I 519
s canFam3.chr30               1733904 463 -  40214260 CGAGGTGAAGGACAGCGTCTCCCAAGGTGTGACTCCCTGGTGCGCCGGCTGTGCCCCGCAGC--CCTCCACCCACACTG----CCCACCACCAGCCCTGGCCGCCCC------CCCTCACTGC-----------------------------------------------GGCCTG-----------CGCT-GGTCCAGCCAGG---------CTC---TCGCTCCCCGCACGCCCC--------GCCTCGccttcaagtcccagcgtagacat--cccttcccccaggaggtacctac---------cccctggcactcccctgggctgggtgctctatcctg--ggccctgcagcccctgtgagcctcctgctgagcaccggtcaCCCCAT-CTGTCCGTGATGGTAACG--accagtatcgccaaagcctctccattttcccatttcgtcctgccagcc-ccgcta-gctttatcagcaaggagcctcctggctcc--cctgaggctcccccttaaccataacgaatttgagaacctgaggtctccgtccaaattcggga-aagccggctgc----------------
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=291827.000000
s hg38.chr15_KI270850v1_alt    249380 198 +    430880 aatcccaccactttgggagaccaaggtggaaagatcacttgagcctaggagttcaagactggcctgagccacacaatgagaccccatctctattttagaaggaaaaaaaaaacaaattaacaaatttggggcagccatctctttccacaccccagtgggaagaggactagggcttggtcagtctgctgc-tgtcattgc
s ponAbe2.chr15              80109017 194 +  99152023 aatcccaccactttgggagaccaaggtgggaagatcacttgagcctaggagttcaagactggcctgagccacacaatgagaccccatctctattttagaaagaaaaaaa----aaattaacaaatttggggcagccatctccttccacaccccagtgggaagaggactagggcttggtcagtctgctgc-tgtcattgc
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116079510 184 - 170124641 aatcccaccactttgggaggccaaggcgggaagatcacttgagcctgggagttcaaggctggcctgagccacacaatgagaccctatctctatttttaaaagaaaaa--------------aaatttgggtcagccatctccttccacaccccagtggggagaggactagggcttggccagtctgctgc-tgtcattgc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106514129 195 - 171882078 aatcccaccactttggcaggccaagatgggaagatcacttgagcctaggagttcaagactggtctgagtcacacaatgagaccccgtctctattttagaaagaaaaaaacaaaaagt---caaatttggggcaaccatctccttccacaccccagtgagaagagaactagggcttggtcagtctgctgc-tgtcattgc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102483198 195 - 162156779 aatcccacgactttggcaggccaaggtgggaagatcacttgagcctaggagttaaagACTGGTCTGAGTCACacaatgagaccccgtctctattttagaaagaaaaaaccaaaaagt---caAATTTGGGGCAACCGTCCCCTTTCACACCCCAGTGAGAAGAGGACTAGGGCTTGGTCAGTCTGCTGC-TGTCATTGC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7709681 184 +  58131712 aatcccaccactttgggaggccaaggtgggaagatcacttgagcctgagagttcaaggctggcctgagccacacaatgagaccccatctctatttttaagagaaaaa--------------aaatttgggtaagccatctccttccacaccccagtggggagaggactagggcttggccagtctgctgc-tgtcattgc
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114226932 183 - 132174527 aatcccaccactttgagaggccaaggtgggaagatgacttgagcctaggatttcaagactggtctgagcgacacaatgaaaccccatctctatttttaaaaaaa----------------tGAATTTGGGGCAGCCATCTCcttccacaccccagtggggagaggactagtgcttggtcagtctgctgcttgtcattgc
i calJac3.chr10             C 0 C 0
s canFam3.chr30               1734367  74 -  40214260 --ttccaca--cttggggggttcgggggagaggacgggcggggcct-------------------------------------------------------------------------------------------------------------------gagggcga-----cggtccacctgccgc-tgccatggc
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56884321 519 + 124595110 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=248818.000000
s hg38.chr15_KI270850v1_alt    249578 303 +    430880 tgctcattgccacaaggtgtcactgttgaacacctatgtggtgcagtctggtgctgatggctgttgagctctgcaggt----------------agtgatgccacatccctacagagatgcaccataccaggactccaagatcatggttcttagtgttctgcctctgcagttcccatactctgccatcacctattctagcatc------tgggagcaccataccagagccatttcttgtgtcaatgtcatggtgacagaactatgtccttcatctctccttgagatattcctccaccacaggtcaggcagctttttttttttttt------
s ponAbe2.chr15              80109211 301 +  99152023 tgctcactgccacaaggtgtcactgttgaacacCTATATGGTGCAGTCTGGTGCTGATGGCTGTTGAGCTCTGCAGGT--------------ACAGTGATGCCACACCCCTAcagagatgcaccataccaggactccaagatcatggttcttagtgttctggttctgcagttcccatactctgccatcacctattctagcatc------tgggagcaccataccagagccatttctggtgtcagtgtcatggtgacagaactatgtccttcatctctccttgagatcttcctccaccacaggtcaggcagctttttttttt----------
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              106514324 298 - 171882078 tgctcactgccacatggtgtcactgttgaacactaatgtggtacagtctggcactgatggctgctgagctctgcgggt--------------acagtgatgccacacccctacagagatgcaccgtaccaggactccaagatcatggctcttattgttcTGGTTTTGCAGTTCCCATAGTCTGCCA-CACCTGTTCTAGCATC------TGGGAGCACCATACCAGAGCCATTTCTGGTGTCATTGTCATGGTTACAGAACTATGTCCTTGATCTGTCCCTGAGATCTCCCTCCACCACAGGTCAGGGAGCTTTTCTTT------------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102483393 299 - 162156779 TGCTCACTGCCACATGGTGTTACTGTTGAACACTAATGTGGTACAGTCTGGCACTGATGGCTGCTGAGCTCTGCGGGT--------------ACAGTGATGCCACGCCCCTACAGAGATGCACCGTATCAGGACTACAAGATCTTGGCTCTTATTGTTCTGGTTTTGCAGTTCCCATACTCTGCCACCACCTGTTCTAGCATC------TGGGAGCACCATACCAGAGCCATTTCTGGTGTCATTGTCATGGTGACAGAACTATGTCTTTGATCTGTCCCTGAGATCTCCCTCCACCACAGGTCAGGGAGCTTTTCTTT------------
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             114227115 297 - 132174527 ttctcactgccacaaggtgtcactgttgaacacCAGCATGGTGCAGTCTGGCACTGATAGCTGTTCAGTTTTGTGGGT--------------CCAACGATGCCACACCCC-ATGGAgatgctccataccagaactccaaaattacagttcttagtgctctggttctacagtccccatactctgccacctcccattctaccatg------tgggagcactgtcccagagccatttctggtgtcaatgtcatggagacagaacaatgtccttcatctctccccaagATTTCCATCTACCCCAGGTCAGGGAGCTGTTTTT-------------
i calJac3.chr10             C 0 C 0
s canFam3.chr30               1734441 300 -  40214260 ttctctctgccaataggcggcactgttgaGCGGGGCCCGGGTGCAGCCTGGGGCCGG-AGCCCTTCCGCCCGACAGGTGTGACGGGACAGGTAGGGCGATGCCACAGCCC-GGGGAGCTG----------GGCTCCCAAGGCCGCCGTGCCCAGGGCTCTGCTC------TTCCCGTACTCTGCCTCCACCCATCCTGCCGTCCAGTAGTGGCAAGGCCACCCCAGGCCCAGTTCTGGTGCCAAAGTCCTAGAGACAGAACAG-----TTCTCCTCTCCCCGCGG--CTCCCTCACCCCAGGTCAGGGAGCTTTTCTTT------ACTTAA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56884321 519 + 124595110 I
e chlSab2.chr26               7709865   0 +  58131712 C
e rheMac3.chr7              116079694   0 - 170124641 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=72641.000000
s hg38.chr15_KI270850v1_alt    249881 113 +    430880 ttttttcccagaacacagagcatctg---cctgggctc--------cctgtccctgaacagttagcctggcttccttcagtgacctcgagaaactttgccaaacttagggggactgatcaacgg
s ponAbe2.chr15              80109512 105 +  99152023 --------cagaacacagagcatctg---cctgggctc--------cctatccctgaacagtTAGCCTGGCTTCCTTCAGTGACCTTAAGAAACTTTGCCAAACTTAGGGGGACTGATCAAGGG
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              106514622 105 - 171882078 --------CCGAACACAGAGCATCTG---CCTGGGCTC--------CCTATCCCTGAGCAGTTAGCCTGGCTTCCCTCAGTGACCTTGAAAAACTTTGCCAAACTTAGGGGGACTGATCAAGGA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102483692 105 - 162156779 --------CCGAACACAGAGCATCTG---CCTGGGCGC--------TCTATCCCTGAACAGTTAGCCTGGCTTCCCTCGGTGACCTTGAAAAACTTTGCCAAACTTAGGGGGACTGATCAAGGG
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             114227412 116 - 132174527 --------CGGAACACAGGGCATTTAAATTCTAATTTAAAAATTAGCCTATCCCTGAACAGTGAGCCTGGCTGCCTTCAGTGACCCCAAGAAACTTTGCCCTGTTGAGGGGAACTGATCAAGGG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56884840  88 + 124595110 TTCAAAAGGAGAACACAGACCATCTC---TCTGGGTT---------CTTAGCCT---ACAGTGAGCCAAGCT--------------------ACTTTTGCGTACTAAGGGGG-TTCATTGGGGG
i mm10.chr9                 I 519 C 0
s canFam3.chr30               1734741  63 -  40214260 ------CCCTCAAAACAGAGCATCTGGA-ATCGGGCTC--------CCCGCC--------ATGAGCCTAGCTGCCC-CGGTGACCCC-------------------------------------
i canFam3.chr30             C 0 C 0
e chlSab2.chr26               7709865   0 +  58131712 C
e rheMac3.chr7              116079694   0 - 170124641 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=485260.000000
s hg38.chr15_KI270850v1_alt    249994 259 +    430880 attctcagttacccattattcc-aggggtga--a--atctagattccaagacaatatttctggtgcttctcactca-aggaaagaggaggagaatttaaaaatacaggttgggt----ttctagaagagcatcttgctatatgtcagttccttgtgggcaaggaccacatctgattcacaccagggtccccagagcccatccaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGCAGGAAGGCAAG
s ponAbe2.chr15              80109617 259 +  99152023 ATTCTCAGTTACCCATTATTTC-AGGGGTGA--A--ATCTAGATTCCAAGACAATATTTCTGGTGCTTCTCACTCA-AGGAAAGAGGAGGAGAATTTAAAAATACAGGTTGGGT----TTCTAGAAGAGCATCTTGCTATAtgtcagttccttgtgggcaaggaccacatctgattcacatcagtgtccccacagcccatccaggcctggcccagagtttcctttggtgagtgtttggaggataaataaaGAGATGGCAGGAAGGCAAG
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116079694 257 - 170124641 ATTCCCAGTTACCTATTTTTCT-AGGGGTGA--A--ATCTAGATTCCAAGACAATATTTCTGGCACCTCTCACTTG-AGGAAAGAGGAGGAGAATTTACAAAT-CAGGTTGGAT----TTCGAGGAGAGCATcttactgtatgtcagttccttgtgggcgaggatcacacctgattcacatcagggtccccagagcccatccaggcctggcccagag-tccctttggtgagtgtttggaggatgagtaaaGAGATGGCAGGATGGCAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106514727 258 - 171882078 ATTCTTAGTTACCCATTATTCT--GGGGTGA--A--ATCTAgattccaagacagtatttctggcacctctccctca-aggaaagagaaggagaatttaaaaatacaggttgggt----ttctagaagagcatcttgctatatgtcagttccttgtgggcaaggagcacatctgattcacatcagggtccccagagcccattcaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGCAGGAAGGCAAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102483797 259 - 162156779 ATTCTTAGTTACCGTTTATTCC-AGGGGTGA--A--ATCTAGATTCCAAGACAGTATTTCTGGCACCTCTCActca-aggaaagagaaggagaatttaaaaatacaggttGGGT----TTCTAGAAGAGCATCTTGCTATATGTCAGTTCCTTGTGGGCAAGGAGCACATCTGATTCACATCAGGGTCCCCAGAGCCCATTCAGGCCTGGCCCAGAGTTTCCTTTGGTGAGTGTTTGGAGGATGAATAAAGAGATGGCAGGAAGGCAAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7709865 257 +  58131712 ATTCCCAGTTACCTATTTTTCT-AGGGGTGA--A--ATCTAGATTCCAAGACAATATTTCTGGCACCTCTCACTCG-AGGAAAGAGGAGGAGAATTTAAAAAT-CAGTTTGGAT----TTCTAGGAGAGCATcttactgtatgtcagttccttgtgggccaggatcacatctgattcacatcacggtccccagagcccatccaggcctggcccagag-tccctttggtgagtgtttggaggatgagtaaaGAGATGGCAGGATGGCAAG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114227528 258 - 132174527 ATTCCCAGTTACCCATTATTCC-AGGGTTGA--A--ATCCAGATTACAAAAAAATATTTCTGGCATCTCTCACTCA-AGGAAAGAAGGGAAGAATTTAAAAATACAGGTTGGAT----TTCTAGGAGAGCAccttgctgtatgtcagttccttgtgggtg-ggaccacatctgattcacatcaggatccccagagcccatccaggcgtgacccagagttccctttggtgagtgtttggaggataagtaaaGAGATGGCAGGAAGGCAAG
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56884928 215 + 124595110 ATCCCAGAGTGCACATTACTCCCAGAGGTAGTTT--TTCTAGAGCCCACAGTAGGTTTTCTGGCACTGCTCACTGG-AGAGAAGAGAGGAAGAA---GGAGAC-CAGGCAAAGTATTGCTTCAGGGGAGAACCTTGCTTTGTGTAAATCCCCAG-GGTCAGGGACAGTCTCTGAGCGACACTGG------------------------GGCCTTGACTCTCCCCAGTT----------------------GAAACAATAGGGAGCTAAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1734804 211 -  40214260 ------AGATGCCCTCTATGCC-CAGAGTGA--ATCTTCTGGAGGTCAAGGTGGT-TGTCTGGTGGCCCTGCCCCGTCGGAAAGCTGGCGAGGG-TAAAACATACAGACTGAAT----CCCTAGGAGAGCATCTTGCTC--TGTCACTTC-------------------TCTGATTCACATCAGGGACCCCAGAGCCCATCTGGACCCG----------------------TGTTTGGGGGATAAGTAAAGAGGTGGCAGGAAGGAggg
i canFam3.chr30             C 0 I 188
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=989129.000000
s hg38.chr15_KI270850v1_alt    250253 425 +    430880 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCC--CTGTGGGGAACCCACTGTGC-TTTTATAAGGGAAATGATGGATTCAAAGTGCTGCCCCCCATCTCCCATTCC-CCGTCTCTCCTCAGGTCAGGCTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATTCTACTGAGTGGCTCCGTCCCCCACACCACAGTTCTGACTGTCTCAGAGGACTGGCCCACATTGTCAGTCAATGGGTTTCTGAATGCCTCCTCTGTAGTCCTGGGAG---CCCCCCTAGAAGTCCCCTATGGGCTCTTTGTTGGGAGCACTGGGAGACTTGGCCTGCCCTACCTGAGGGGAACCAGCCATCCCCTGAGGGGTTGCCTCCATGCAGCCGCTCTCAATGGCCGCAGACTCCTC
s ponAbe2.chr15              80109876 427 +  99152023 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTGC-TTTTATAAGGGAAATGATGGATTCAAAGTGCTGCTCCCCATCTCCCATTCC-CTGTCTCTCCTCAGATCAGGCTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATGCTGCTGAGTGATTCCGTCCCCCACACTACAGTTCTGACTGTCTCAGAGGACTGGCCCACATTGTCAGTCGATGGGTTTCTGAATGCCTCCTCTGTAGTCCTGGGAG---CCCCCCTAGAGGTCCCCTATGGGCTCTTTGTTGGGAGCACTGGGAGCCTTGGCCTGCTCTACCTGAGGGGAACCAGCCATCCCCTGAGGGGTTGCCTCCATGTAGCCACTCTCAATGGCCGCAGCCTCCTC
i ponAbe2.chr15             C 0 C 0
s rheMac3.chr7              116079951 427 - 170124641 AGGAGTGGCCCCAGAGGCCCTCATCCCAGGTTTTCCACTCTGGGGCCCCAAGTGTGGGGAACGCACTATGC-TTTTATAAGGGAAATGATGGATTCAAAAGTCTGTTCCCCATCTCCCACTCC-CCATCCCTCTTAAGGTCAGATTTGTCCTGAGCCAGGAGGAGCTGAAGCTGCAGACCCCAGCAGAGAAGCTGCTGAGTGACTCCTTTGCCCATACTATGGTGCTGAGTGTCCTAGAGGGCTGGGCCACATTGTCAGTTGATGGATTTCTGAACGCCTCCTGTACAGTCCCAGGAA---ACCCCATAGAGGTCCCCTATGGGCTCTTTGTTGGGGGTACTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAACCAGCTATGCCCTGAGAGATTGCCCCTATGCAGCCACCCTCAATGACTGCAGCCTCCTC
i rheMac3.chr7              C 0 I 10
s macFas5.chr7              106514985 427 - 171882078 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTGCGTTTTATAAGGGAAATGATGGATTCAAAGTGCTGCCCCCCATCTCCCATTCC-CCGTCTCTCCTCAGGTGAGACTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATGCTGCTGAGCGACTCCATCCCCCACACTATGGTGCTGACTGTCTCAGAGGGCTGGGCCACATTGTCAGTTGATGGGTTTCTGAACGCCTCCTCTGCAGTCCT-GGGA---GCCCCGTAGAAGTCCCCTGTGGGCTCTTCGTTGGGAGCATTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAACCAGCTATGCCCTGAGAGATTGCCCCTATGCAGCCACCCTCAATGGCTGCAGCCTCCTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102484056 427 - 162156779 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTGCGTTTTATAAGGGAAATGATGGATTCAAAGTGCTGCCCCCCATCTCCCATTCC-CCGTCTCTCCTCAGGTGAGACTTGTCCTGGGCCAGGAGGAGCTGAGGCTGTAGACCCCAGCAGAAATGCTGCTGAGCGACTCCATCCCCCACACTACAGTGCTGACTGTCTCAGAGGGCTGGGCCACATTGTCAGTTGATGGGTTTCTGAACACCTCCTCTGCAGTCCT-GGGA---GCCCCGTAGAGGTCCCCTGTGGGCTCTTCGTTGGGAGCATTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAACCAGCTGTCCCCTGAGAGATTGCCCCTATGCAGCCACCCTCAATGGCTGCAGCCTCCTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7710122 427 +  58131712 AGGAGTGGCACCAGAGGCCCTCGTCCTAGGTTTTCCACTCTGGGGCCCCAAGTGTGGGGAATGCACTATGC-TTTTATAAGGGAAATGATGGATTCAAAATTCTGTTCCCCATCTCCCACTCC-CCATCTCTCTTAAGGTCAGATTTGTCCTGAGCCAGGAGGAGCTGAAGCTACAGACCCCAGCAGAGAAGCTGCTGAGTAACTCCTTTGCCCATACTATGGTGCTGATTGTCGTAGAGGGCTGGGCCACATTGTCAGTTGATGGGTTTCTGAACGCCTCCTGTACAGTCGCAGGAG---CCCCCATAGAGGTCCCCTATGGGCTCTTTGTTGGGGGCACTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAAGCAGCCGACCCCTGAGGGGTTGCCTCCATGCAGCCACCCTCAATGACTGCAGCCTCCTC
i chlSab2.chr26             C 0 I 10
s calJac3.chr10             114227786 427 - 132174527 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCTCCAACTGTGGGGAACCCACTATGC-TTTTATAAGGGAAATGATGGATTCAAAGTGCTGTCCCCCATCTCCCATTCC-CTGTCTCTCCTCAGGTCAGACTTGTCCTCAGCCAGGAGGAGCTGAGGCTGCAGACCCCAACAGAGATGCTGCTGAGTGACTCCATCCCCCACACTGCGGTGCTGACTGTCTCAGAGGGCTGGGCCACGTTGTCGGTTGATGGGCTTCTAAACGCCTCCTCTGCAGTCCCAGAAG---CCCCCCTAGAGGTCCCCTATGGGCTCTTTGTTGGGGGCACTGGGAGTCTTGGCCTGTCATACCTGAGGGGAACCAGCCGACCCCTGAGGGGATGCCTCCATGCAGCCACCCTCAATGGCCGCAGCCTCCTC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56885143 385 + 124595110 GG-------------------TGTCCCAG---------TCCGGGTT-----CTGAAGGGGGCTCAGTGTGG---------GGTAGACAGAAGTGTCA----GCCACTCCCACCCCTGACCTCT-CTGTCTCTCTTCAGGTCAGACTTGCCCTGGGACAGAAGGAGCTAAAGCTGCAGACGCCAGCAGACACCGTGCTGAGTGACTCTGCCCCCCACACTGTAGTGCTCACTGTCTCCGACAGCTGGGCTGTGCTGTCTGTTGACGGAGTGTTGAACACCTCTGCTCCCATCCCAAGAGCATCCCACCTCAAGGCCACCTACGGGCTCTTCGTGGGCTCCTCTGGAAGCCTTGACCTGCCTTACCTGAAGGGAATCAGCCGACCCCTAAGGGGCTGCCTCCACTCAGCCATTCTCAATGGCCGCAACCTCCTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1735203 426 -  40214260 AGGGGTGGCATGAGAAACCTTTGTCCCAGGACGTCTGCTCTGGGGACTCCAATGTGGCCGACCAACTATGT-TCTTACAGGAGAAGCAGATCGTCCGAAGTGCTGTCCCCA--CTCCCATCCCTCCGTCTCTCCCCAGGTCAGACTCACCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCTGAGACTCCGCTGAGCGACTCCGCCGTCCACTCCGTGGAGCTGACTGTGTCAGACAGCGAGGCCTCGTTGTCCGTCGATGGGCTGCTGAACGCCTCAGCCCCCGTCCTGGGAG---CTCCCCTGGAGGTCCCCTATGGGATCTTCCTGGGGGGCACTGGGAGCCTGAGCCTGTCCTACCTGATGGGAGCCAGCCGGCCCCTGAGGGGCTGCCTGCACGCCGCCACCGTCAACGGCCGCAACCTCCTC
i canFam3.chr30             I 188 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=1266677.000000
s hg38.chr15_KI270850v1_alt    250678 833 +    430880 CAGCCTCTGACCCCCAATAAGCATGAGGGCTGTGCTGAAGAGTTTTCTGCCAATGATGATGTGGCCCTGGGCTTCTCTGGGTCCCACTCTCTGGCTGCCTTGCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGTTTACACTCACCACACAGAGCTGGCAGGCACCCTTGGCCTTCCAGGCAGCAGGCTGGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGTCCATGGTTGAGAAGGGCCAGGGTACTGTATTGCTCCTCAACAGTGTGCCTGTGACTGACGCACAGCCCCACAAGGTCAGCATCCACATCAACATTCACCAGCTAGAAATCTCCATGGACCAGTA-CCCCACAC-------GAACTGAGGAGTCCTCAGCTACCTGGAGCCACGTGACAGTCTCCTTCTTGGGGAGCTGGTTGCAGAGGCCTCTCATCACCTCCAGGAACACCGCTCAGGCCTGACACCAGGGGCTGCCAATGCCTCCCTGCTGGGCTGGCTGCATGGAAGACCTCAGTGTCAATGGCTAGAGGCAGGGGCTGTGGGAAGCCTTGCTGACGCACAACATGGTGGCTGGCTGCAGACTGGAGGAGGT------------AGACAATGCCTATGGCCATTATGAAGCTTTCTCCACCCTGGCTCCCAAGGCTTGGCTGTCCGTGGAGCTAGCTGAGCCATGCGTGCCTGAGCCAGGGCTACCTCCTGTCTTTGCCAATTTCATCCAGCTG----CTATCAGCGCAGTGGTGGTGACCGAGGGTGGCACAGCCTGGCTTGAGTGGTGGCATGTGCAGCCCATGCTGGCACTGATGGAGGCTGAACTGCGT
s ponAbe2.chr15              80110303 854 +  99152023 CGGCCTCTGACCCCCAATATGCATGAGGGCTGTGCTGAAGAGTTTTCCACAAGTGATGATGTGGCCCTGGGCTTCTCTGAGCCCCACTCTCTGGCTGCCTTCCCTGCCTGGGGCACTCAGGACGAAGGAACCCTGGAGTTTACACTCACCACACAGAGCTGGCAGGCACCCTTGGCCTTCCAGGTAGTGGGCTGGTGTGGGGACTTCACCTGTGTGGACATATTTGAGGGCCAC--GTGGTCCATGGTCGAGAAGGGCCAGGGTACTGTACTGCTCCTCAACAGTGTGCCTGTGGCCGACGCGCAGCCCCACAAGGTCAGCATCCACATCAACACTCACCAGCTAGAAGTCTCCATGGACCAGCA-CCCCACACGTACTTTGAACCGAGGAGTCCTCAGCTACCTGGAGCCACGTGACAGTCTCCTTCTTGGGGAGCTGGTTGCAGATGCCTCTTGTTACCTCCGGGAACACCGCTCAGGCCTGACACCAGGGGCCGCCAATGCCTCCCTGCTGGGCTGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGTGGGGGCTGCGGGAAGCCTTGCTGACACACAACATGGTGGCTGGCTGCAGACTGGAGGAGGTGGAGGAGTATGAGGACAATGCCTATGGCCATTATGAAGCTTTCTCCACCCTGGCCCCCGAGGCTTGGCTGTCCGTGGAGCTAGCTGAGCCATGCGTGCCTGAGCCAGGGCTGCCTCCTGTCTTTGCCAATTTCACCCAGCTGCTGACTATCAGCCCAGTGATGGTGACCAAGGGTGGCACAGCCTGGCTTGAGTGGTGGCATGTGCAGCCCATGCTGGCACTGATGGAGGCTGAACTGCGT
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              106515412 854 - 171882078 CGGCCTCTGACCCCCGAGGTGCGTGAGGGCTGTGCTGAAGAGTTTTCTGCCAGTGAGGATGTGGCACTGGGCTTCTCTGGGCCCCACTCTTTAGCTGCCATCCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGTTGACACTCACCACACAGAGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGACCCGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGGCCATGGTCGAGAAGGGCCAGGGTACTGCATTGCTCCTCAGCAGTGTGCCTGTGGCTGACAGGCAGCCCCACAAGGTCAGTGTCCACATCAACATTCACCAGCTGGAAATCTCCATGGACCAGTACCCCCACGTGTACTTCGAACCGAGGAGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTTCTTGGGGGGCTGGTTGCAGAAGCCTCTTGTCACCTCCAGGAATACCGCCCAGACCTGACACGAGGAGCCGCCAATGCCTCACTGCTGGGATGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGCGGGGGCTGCGGGAAGCCTTGTTGACGCACAACATGGCGGCTGGCTGAGgg-tggaggaggtggaggagtatgaggatgaTGCCTGTGACCATTATGAAGCTTTCTCCATGCTGGCCCCCAAGACTTGGCTGGCCATGGAGCTAGCTGAGCCATGAGTGCCTGAGCTAGGGCTGCACCCTGTC--TGCTAATTTCACCCAGCTGTTGACTGTCTGCCCACTGGTGGTGGCTGAGGGTGGCACAGCCTGGCTTGAGTGGCAGCACGTGCAACCCATGCTGGCCCTGATGGAGGCTGAGCTGCGC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102484483 854 - 162156779 CGGCCTCTGACCCCCGAGGTGCGTGAGGGCTGTGCTGAAGAGTTTTCTGCCAGTGAGGATGTGGCACTGGGCTTCTGTGGGCCCCACTCTTTAGCTGCCGTCCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGCTGACACTCACCACACAGAGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGACCCGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGGCCATGGTCGAGAAGGGCCAGGGTACTGCATTGCTCCTCAGCAGTGTGCCTGTGGCTGACAGGCAGCCCCACAAGGTCAGTGTCCACATCAACATTCACCAGCTGGAAATCTCCATGGACCAGTA-CCCCACATGTACTTTGAACTGAGGAGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTTCTTGGGGGGCTGGTTGCAGAGGCCTCTTGTCACCTCCAGGAATACCGCCCAGACCTGACACGAGGAGCCGCCAATGCCTCACTGCTGGGATGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGCGGGGACTGCGGGAAGCCTTGTTGACGCACAACATGGCGGCTGGCTGAGGGCTGGAGGAAGTGGAGGAGTATGAGGATGATGCCTGTGACCATTATGAAGCTTTCTCCATGCTGGCCCCCAAGACTTGGCTGGCCATGGAGCTAGCTGAGCCATGAGTGCCTGAGCTAGGGCTGCACCCTGTC--TGCTAATTTCACCCAGCTGTTGACTATCTGCCCACTGGTGGTGGCTGAGAGTGGCACAGCCTGGCTTGAGTGGCAGCACGTGCAACCCATGCTGGCCCTAATGGAGGCTGAGCTGCGC
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             114228213 849 - 132174527 CAGCCTCTGACGCCTGACGTGCATGAAGGCTGTGCTGAAGAGTTTTCTGCTGGTGATGATGTGGCCCTGGGCTTCTCCGGGCCCCACTCTCTGGCTGCCTTCCCTGCGTGGGGCACTCAGGATGAAGGAACCCTGGAGTTTATACTCACTACACGGAGCCGGCAGGCACCCTTGGCCTTCCAGGCAGGCGGCCGGCATGGGGACTTCATCTATGTGGACATATTTGAGGGCCACCTGCGGGCCGTGGTTGAGAAGGGCCAGGGTACCATACTGCTACACAACAGTGTACCTGTGGCCGATGGGCAGCCCCACGAGGTCAGTGTCCACATCAATGCTCACCAGCTGGAAATCTCTGTGGACCAGTA-CCCGACACGTACTTCGAACCGTGGCGTCCTCAGCTACCTGGAGCCACGCGGCAGTCTCATTCTTGGGGGGCTGGATGCAGAGGCCTCTCATCACCTCCAGGAACACCGCCTGGGCCTGACGCCAGGGGCCACCAATGCCTCCCTCCTG----GGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGTGAGGGCTGCGGGAAGCATTGCTGACACGTGACATGGCAGCTGGCTGCAGGCTAGAGGAGG---AGGAGTACGAGGACGATGCCTATGGCCATTATGAAGCTTTCTCCACCCTGGCCCCCGAGGCTTGGCCGGCCATGGAGCTGCCTGAGCCATGTGTGCCTGAGCCTGGGCTGCCTCCTGTTTTTGCCAATTTCACCCAGCTTCTGACCATCAGCCCACTGGTAGTGGCCGAGGGCGGCACAGCCTGGCTTGAGTGGCGACACGTGCAGCCCACGCTGGACCTGATGGAGGCTGACCTGCGC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56885528 849 + 124595110 CGTCCGCTGACCTCCGATGTTCATGAAGGTTGTGCTGAAGAATTCTCTGCTGGTGATGAAGTGGGCCTGGGCTTCTCTGGGCCCCACTCACTGGCTGCCTTCCCTGCCTGGAGCACTCGGGAGGAAGGCACCCTGGAGTTTACGCTCACCACTCGGAGTCAGCAAGCACCCCTGGCCTTCCAAGCAGGGGACAAGCGTGGCAACTTTATCTACGTGGACATATTTGAGGGCCACTTGCGGGCTGTGGTTGAGAAAGGCCAAGGTACCATGCTACTCCGCAACAGCGTGCCTGTGGCTGATGGGCAGCCCCACGAGGTCAGCGTACACATAGATGTTCACCGGCTGGAAATCTCTGTAGACCAATA-CCCTACGCGTACTTTCAACCGTGGGGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTCCTTGGGGGTCTGGACACAGAAGCCTCTCGCCACCTCCAAGAGCACCGTCTGGGCCTGGCACCGGGGGCTGCCAATATCTCCCTGGTA----GGCTGCATAGAAGATTTCAGTGTTAATGGCAGGAGGCAGGGCCTCCGGGATGCCTGGCTGACCCGTGACATGTCAGCAGGATGCAGGCCTGAGGAGG---ATGAATATGAAGAAGAGGTCTATGGCCCATATGAAACTTTCTCCACCCTGGCACCAGAAGCTTGGCCAGCCATGGAACTGCCAGAGCCATGTATTCCTGAGCCGGGACTGCCTGCTGTCTTTGCAAACTTCACCCAGCTGCTTACCATCAGCCCCCTGGTGGTGGCCGAGGGTGGCACGGCCTGGCTTGAGTGGCGGCACGTGCAGCCCACCCTGGACCTGACAGAGGCAGAGCTGCGC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1735629 849 -  40214260 CGACCACTGACCCCTGACGTGCACGAGGGCTGCGCTGAAGAGTTTTCTGCTGATGACAGCGTGGCTCTGGGCTTCTCTGGGCCCCACTCGCTGGCTGCCTTCCCTGCCTGGAACACTCGGGAGGAGGGCACCCTGGCGTTCATACTCACCACTCGGAGCCGACAGGCGCCCCTGGCTTTCCAGGCGGGCGGCCGGCACGGGGATTTCATCTACGTGGACATATTTGAGGGCCACCTGCGGGCTGTGGTGGAGAAGGGCCAGGGCACCGTGTTGCTCCACAACAGCGTGCCCGTGGCTGACGGGCTACCCCATGAGGTCAGTGTCCACGTGGATGCTCACCAGCTGGAAATCTCCGTGGACCAGTA-CCCCACACGGACTTCCAACCGTGGGATCCTCAGCTACCTGGAACCCCGCGGCAGTCTCCTCCTGGGGGGGCTGGACACAGAGGCCTCCCGCCACCTCCAGGAACACCGCCTGGGCCTGGCCTCGGGGGCCGTCAACGTCTCCCTCCTG----GGCTGCATGGAGGATCTCAGCATCAACGGCCAGAGGCAGGGGCTCCGGGAAGCCTCGCTGACTCGCAGCATGGTGGCCGGCTGCAGCCTGGAGGAAG---ACGAGTACGAGGAGGACACCTACGGCACCTATGAAGCTCTCTCCACCCTGGCACCGGAGGCCTGGTCCGCCGTGGAGCTGCCCGAGCCCTGCGTGCCCGAACCGGGGCTGCCTCCCGTCTTTGCCAACTTCACCCAACTGCTGACTGTCAGCCCGCTGGTGGTGGCCGAGGGGGGCACAGCCTGGCTTGAGTGGCGGCACCTGCAGCCCACGCTGGACCTGAGCGAGGCCGAGCTGCGT
i canFam3.chr30             C 0 C 0
e chlSab2.chr26               7710549  10 +  58131712 I
e rheMac3.chr7              116080378  10 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=2661376.000000
s hg38.chr15_KI270850v1_alt    251511 983 +    430880 AAATCCCAGGTGCTGTTCAGCGTGACCTGAGGGGCACACTACAGCGAGCTCGAGCTGGATGTCCTGGGTGCCCAGGCATGAAAAATGTTCACCCTCCTGGACGTGGTGAACTGCAAGGCCCGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGGTGCTGGAGGTGTCAGTGATGGCTTGGTTGCCCATGCCCTCATGCCTGCGGAGGGGCCAAACAGACCTCCTGCCCATCCAGGTCAACCCTGTCAATGACCCACCCCACATCATCTTCCCACATGGCAGCCTTATGGTGATCCTGGAACACACACAGAA---GCCTCTGGGGCCTGAGGTTCTCCAGGCCTATGACCTGGACTCTGCCTGTGAGGGCCTCACCTTCCAGCTCCTTGGCACCCCCTCTGGCCTCCCCGTGGAGCACCGAGAC-------CAGCCTGGGGAGCCGGTGACTGAGTTCTCCTGCTGGGAGTTGGAGGCCGGCAGCCTAGTCTATGTCCACTGTGGTGGCCCTACACAGGACTTGACATTCCGGGTCAGCAATGGACTGCAGGCCAGCCCCC---CGGCCATGCTGAAGGTGGTGGCTGTCCAGCTGGCCATACAAATCCACCGCAGCACAGGGCTGCATCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCTACCAACCTGTTGGTGGAGACCAGCGCCGTGGGGCAGGATGTGACCGTGCTGTTCCGTGTCACCGGAGGCCTGCCGTTCAGGGAGCTGCAGAAGCAGGGGGCTGGTGGGGTGGAGGATGCTGAGTGGTGGGTCACACAGGCGTTCCACCAGCAGGATGTGGAGCAGGGCCACGTGAGGTACCTGAGCACTGACCCACAGCACTACACCGAGGACACCGTGGAGAACCTGGATCTGCAGGTGCAGGTGAGCTGGGAAATCCTGAGCAATCTGTC-CTTCCTAGTGACCATCCAGAGAGCCACTGTGTGGATGCTGCAGCTGGAGCCACT
s ponAbe2.chr15              80111157 983 +  99152023 AAATCCCAGGTGCTGTTCAGCATGACCTGAGGGGCACACTACGGTGAGCTCGAGCTGGACATCCTGGGTGCCCAGGCACGAAAAATGTTCACCCTCCTGGACGTGGTGAACTGCAAGGCCCGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGCTGCTGGAGGTGTCAGTGACAGCTTGGGTGCCCATGCCCTCATGCCTGCGGAGGGGCCAAACTGACCTCCTGCCCATCCAGGTCAACCCTGTCAATGACTCACCCCGCATCATCTTCCCACATGGCAGCCTTATGGTGATCCTGGAACACACACAGAA---GACTCTGGGGCCTGAGGTTTTCCAGGCCTATGACCCGGACTCTGCCTGTGAGGGCCTCACCTTCCAGCTCCTT-GCACCCCCTCTGGCTTCCCTGTGGAGCACCGAGAC-------CAGCCTGGGGAGCTGGTGACCGAGTTCTCCTGTTGGGAGTTGGAGGATGGCAGCCTAGTCTATGTCCACTGCGGTGGCCCCGCATAGGACTTGACGTTCCGGGTCAGCAATGGACTGCAGGCCAGCCCCC---TGGCCATGCTGAAGGTGGTGGCCATCCAGCTGGCCATACAGATCCACCGCAGCACAGGGCTGCATCTGGCCCAGGGCTCTGCCATGCTCATCTTGCCTACCAACCTGTCGGTGGAGACCAGCGCCGTGGGGCAGAATGTGAGCGTGCTGTTCCGTGTCACCGGAAGCCTGCAGTTCGGGGAGCTGCAGAAGTGGGGGGCTGGTGGTGTGGGGGGTGCTGAGTGGTGGGCCACGCAGGCGTTCCACCAGCAGGATGTGGAGCAGGGCCGCGTGAGGTACCTGAGCACTGACCCACAGCACTATGCCAAGGACACTGTGGAGAACCTGGATCTGCGGGTGCAGGTGAGCTGGGAAATCCTGAGCAATCTGTCACTTCCTAGTGACCATCCAGAGAGCCACCGTGTGGATGCTGCGGCTGGAGCCACT
i ponAbe2.chr15             C 0 n 0
s rheMac3.chr7              116080388 966 - 170124641 AAATCCCAGGTGCTGTTCAGTGTGACCCGAGGGGCACGTGACGGTGAGCTCAAG--------CCCGGGTGCCCAGGCACAAAAAATGTTCACCCTTCTGGACGTGGTGAACCGCAAGGCCCGCTTCATCCACGATGGCTCTGAGGACACCTCCGACCAGCTGGTGCTGGAGGTGTCAGTGACGGCTCGGGTGCCTATGCCTTCATGCCTGCGGAGGGGCCAAACTGACCTCCTGCCCATCCAGGTCAACCCTCTCAATGACCCTCCCCACATCGTCTTCCCACATGGCAGCTTCATGGTCATCCTGGAACACACACAGAAGCCGCCACTGGGGCCCGAGGTTTTCCAGGCCTATGACCCAGACTCTGCCTGTGAGGGCCTCACCTTCCAGTTCCTTGGCACCCCCTCTGGCCTCCCTGTGCAGCGCCGAGAC-------CAGCCTGGGGAGCCGGCAACCGAGTTCTCCTGCCAGGAGTTGGAGGCCGGCAGCCTAGTCTATGTCCACCGCGGTGGCCCTGCACAGGACTTGACATTCCGGGTCAGCGATGGACTGCAGGCCAGCCCCC---CGGCCACGCTGAAGGTGGTGGCTGTCCGGCTAGCCATACAGATCCACCGCAGCAA------------GGCCCAAGGCCCTGCCATGCCCATCTTGCCCGCCAACCTGTCGGTGGAGACCAATGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGCGTCACCAGAGCCCTGCAGTTCGGGGAGCTACAGAAGCAGGGGGCAGGTGGGGTGGAGGGTGCTGAGTGGTGGGCTACACAGGCGTTCCACCAGCGGGATGTGGAGCAGGGCTGCATGAGGTACCTGAGCACCGACCCACAGCACCGCACCGAGGACACCGTGGAGAACCTAGCCCTGGAGGTGCAGGTGGGCCAGGAGATCCTGAGCAATCTGTC-CTTCCCAGTGACCATCCAGAGAGCCACCGTGTGGATGCTGCAGCTGGAGCCACT
i rheMac3.chr7              I 10 C 0
s macFas5.chr7              106516266 993 - 171882078 ACATCCCAGGTGCTGTTCAGCGTGACCTGAGGGGCATGCTAGGGCGAGGTTGAACTGGACATCCCGGGTGCCCAGGCATGAAAAATGTTCACCCTCCTGGACATGGTGAACCACAAGGCCTGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGGTGCTAGAGGTGTCAGTGACGGCTCTGGTGCCCATGCCCTCATCCCTACAGAGGGGCCAAAATGACCTTCTGCCCTTCCAGGTTCACCCTGTCAGTGACCCACGAGGCATCATCTTTCCACGTGGCAGCCTCATGGTGTTCCTGGAACACATGCAGAA---GCCACTGGGGCCTGAGGTTTTCCAGGCCTATGACCCGGACTCTGCCTGTGAGGGCCTCGCCTTCTAGCTCCTTGGCGCCCCCTCTGGCCTCCCCGTGGAGCACTGAGACCATGGAGCAGCCTGGGGAGCCGGTGACCGAATTCTCCTCCTGGGAGTTGGAGGCTGGCAGCCTAGTCTATGACCACCGCGGTGGCCCTGCACAGCACTTGACTTTCTGGATCAGCGATGGACTGCAGGCCACCCCCCCCTCGGCCACGCTGAAGGTGGTGGCTGTCCAGCTGTTCATACAGATCCACCACAGCACAGGACTGTGCCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCCACCAACCTGTCGGTGGAGACCAGCGCCGTGTGGCGGGATGTGAGCGTGCTGTTCCGCATCGCTGGAGCCCTGCAGTTCAGGGAGCTGCAGAAGCAGGGGGCTAGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCATTCCACCAGCCGGACGTGGAGTAGGGCCGCGTGAGGTACCCGAGCACCGACCCACAGCACCACGTTGAGGACACTGTGGAGAACCTGGATCTGGAGGTGCAGGTGGGCTGGGAAATCCTGAGCAATCTGTC-CTTCCCAGTGACCATCCAGAGAGCCACAGTGTGGATGCTACGGCTGGAGCCACT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102485337 993 - 162156779 ACATCCCAGGTGCTGTTCAGCGTGACCTGAAGGGCATGCTAGGGCGAGGTTGAACTGGACATCCCGGGTGCCCAGGCATGAAAAATGTTCACCCTCCTGGACATGGTGAACCGCAAGGCCCGCTTCATCCACGATGGCCCTGAGGACAGCTCTGACCAGCTGGTGCTAGAGGTGTCAGTGACGGCTCTGGTGCCCATGCCCTCATGCCTACAGAGGGGCCAAAATGACCTCCTGCCCTTCCAGGTTCACCCTGTCAGTGACCCACGCGGCATCATCTTTCCACGTGGCAGCCTCATGGTGTTTCTGGAACACATGCAGAA---GCCACTGGGGCCTGAGGTTTTCCAGGCCTATGACCCGGACTCTGCCTGTGAGGACCTCGCCTTCTAGCTCCTTGGTGCCCCCTCTGGCCTCCCCGTGGAGCACTGAGACCGTGGAGCAGCCTGGGGAGCCGGTGACCAAGTTCTCCTGCTGGGAGTTGGAGGCCGGCAGCCTAGTCTATGACCACCGCGGTGGCCCTGCACAGCACTTGACTTTCTGGATCAGTGATGGACTGCAGGCCACCCCGCCCTCAGCCACGCTGAAGGTGGTGACTGCCCAGCTGTTCATACAGATCCACCACAGCACAggactgtgcctggcccagggctcTGCCATGCCCATCTTGCCCACCAACCTGTCGGTGGAGACCAGCGCCGTGTGGCAGGATGTGAGCATGCTGTTCCGCATCGCTGGAGCCCTGCAGTTCAGGGAGCTGCAGAAGCAGGGGGCTAGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCATTCCACCAGCCGGACGTGGAGTAGGGCCGCATGAGGTAGCTGAGCACCGACCCACAGCACCACATCGAGGACACCGTGGAGAGCCTGGATCTGGAGGTGCAGGTGGGCTGGGAAATCCTGAGCAATCTGTC-CTTCCCAGTGACCATCCAGAGAGCCACAGTGTGGATGCTACAGCTGGAGCCACT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7710559 975 +  58131712 AAATCCCAGCTGCTGTTCAGCGTGACCCAAGGGGCACGTGACGGTGAGCTCAAG--------CCCGGGCGCCCAGGCACAAAAAATATTCACCCTCCTGGACGTGGTGAACCGCAAGGCCCGCTTCATCCACGATGGCTCTGAGGACACCTCCGACCAGCTGGTGCTGGAGGTGTCAGTGATGGCTCGGGTGCCTATGCCCCCATGCCTGCGGAGGGGCCAAACTTACCACCTGCCCATCCAGGTCAACCCTGTCAATGACCCACCCCACATCATCTTCCCACATGGCAGCCTCATGGTGATCCTGGAACACACACAGAA---GCCGCTGGGGCCCGAGGTTTTCCAGGCCTATGACCCAGACTCTGCCTGTGAGGGCCTCACTTTCCAGTTCCTTGGCGCCCCCTCTGGCTTCCCCGTGCAGCGCCGAGAC-------CAGCCTGGGGAGCCGGCAACCGAGTTCTCCTGCCGGGAGTTGGAGGCCGGCAGCCTAGTCTATGTCCACCGCAGTGGCCCTGCACAGGACTTGACATTCCGGGTCAGCGATGGACTGCAGGCCAGCCCCC---CGGCCACGCTGAAGGTGGTGGCCGTCCGGCCGGCCATACAGATCCACCGCAGCACAGGGCTGCGCCTGGCCCAAGGCTCTGCCATGCCCATCTTGCCCGCCAACCTGTCGGTGGAGACCAATGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGCGTCACCGGAGCCCTGCAGTTCGGGGAGCTGCAGAAGCAGGGGGCAGGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCGTTCCACCAGCGGGATGTGGAGCAGGGCCGCGTGAGGTACCTGAGCACCGACCCACAGCACCGTACCGAGGACACCGTGGAGAACCTAGCCCTGGAGGTGCAGGTGGGCCAGGAGATCCTGAGCAATCTGTC-CTTCCCAGTGACCATCCAGAGAGCCACCGTGTGGATGCTGCGGCTGGAGCCACT
i chlSab2.chr26             I 10 C 0
s calJac3.chr10             114229062 983 - 132174527 AAGTCTCAGGTACTGTTCAGTGTGACCCGAGGAGCACGCCACGGCGAGCTCGAGCTGGACATCCCGGGTGCTCAGGCACGAAAAATGTTCACCCTGCTGGACGTGGTGAACCGCAAGGCCCGCTTCATCCACGATGGCTCTGAGGACACCTCCGACCAGCTGGTGCTGGAGGTGTCAGTGACGGCTCGGGTGCCCATGCCCTCGTGCCTGCGGAGGGGCCAAACTTACCTCCTGCCCATCCAGGTCAACCCTGTCAATGACCCGCCCCACATCATCTTCCCACATGGCAGCCTCATGGTGATCCTGGAACACACGCAGAA---GCCACTGGGGCCCGAGGTTTTCCAGGCTTATGACCCGGATTCTGCCTGCGAGGGCCTCACCTTCCAGCTCCTTGGTGCCCCCTCAGGCCTCCCTGTGGAGCGCCGAGAC-------CAGCCTGGGGAGCCAGCGACCGAGTTCTCCTGCCGGGAGTTGGAGGACGGGAACCTAGTGTATGTCCACCACAGTGGCCCAGCACAGGACTTGACGTTCCGGGTCAGTGATGGACTGCAGGCCAGCCCCC---CAGCCACACTGAAGGTGGTGGCTGTCCGACCAACTATACAGATCCGCCGCAGCACAGGGCTGCGCCTGGCCCAGGGCTCCGCCATGCCCATCTTGCCCGCCAACCTGTCAGTGGAGACCAACGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGCATCCCCGGAGCCCTGCAGTTTGGGGAGCTGCAGAAGCAGGGCGCAGGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCGTTCCACCAGCGGGACGTGGAGCAGGGCCGTGTGAGGTACCTGAGCACCGACCCACAGCACCACACTGAGGACACCATGGAGAACCTGGCCCTGGAGGTGCAGGTGGGCCAGGAGATCCTGAGCAATCTGTC-CTTCCCAGTGATCATCCAGAGAGCCACTGTGTGGATGCTGCGGCTGGAGCCACT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56886377 983 + 124595110 AAGTCCCAGGTGCTGTTCAGCGTGAGCCAGAGTGCACGACATGGTGACCTGGAGCTAGACATCCTGGGAGCCCAAACCCGGAAAATGTTTACCCTGTTGGACGTGGTGAACCGTAAGGCCCGCTTTGTTCACGATGGCTCTGAAGACACCTCTGACCAGCTGATGCTGGAGGTGTCTGTGACTGCTCGGGCACCTGTGCCCTCCTGCCTGCGGAGGGGCCAAATTTACATCCTGCCCATCCAGGTCAATCCTGTCAACGATCCACCTCGCATCATCTTCCCCCACGGCAGCCTCATGGTGATCCTGGAACACACACAGAA---GCCTCTGGGACCGGAGATTTTCCAGGCCTACGACCCGGACTCTGCCTGTGAGGGTCTCACCTTCCAGCTCCTTGGCGTCTCCTCTGGTGTCCCTGTGGAACACCGAGAC-------CAGCCAGGAGAGCCAGCAACTGAGTTTTCCTGTCGGGAACTGGAGGTGGGCGACATAGTCTATGTCCACCGTGGTGGGCCTGCACAGGACCTAACATTCCGGGTCAGTGATGGGATGCAGGCCAGTGCTC---CAGCGACACTGAAGGTAGTGGCCGTCCGGCCAGCCATACAGATCCTCCACAACACAGGGCTGCACCTGGCCCAGGGCTCTGCCGCAGCCATCTTGCCTGCCAACCTGTCAGTAGAAACGAACGCGGTGGGACAGGATGTGAGCGTGCTGTTCCGAGTCACTGGTACCTTGCAATTCGGGGAGCTGCAGAAGCAGGGGGCCGGAGGGGTCGAGGGCACCGAGTGGTGGGACACACTGGCCTTCCACCAGCGCGATGTGGAGCAAGGCCGAGTGAGGTACCTGAGCACTGACCCACAGCACCACACCCAAGACACAGTGGAGGACCTGATCTTAGAGGTGCAGGTGGGCCAGGAGACACTGAGCAATCTGTC-TTTCCCAGTGACCATCCAGAGGGCCACAGTATGGATGCTGAGGCTTGAACCTCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1736478 983 -  40214260 AAATCCCAGGTGCTGTTCAGCGTGAGCCGTGGGGCCCGCCACGGGGAGCTCGAGCTGGACGTCCCGGGAGCCCAGGCACGGAAAATGTTCACCCTCCTGGACGTGGTGAACCGCAAGGCCCGCTTCGTCCACGATGGCTCGGAGGAGACCTCCGACCAGCTGATGCTGGAGGTGTCCGTGACCGCCAGGGGCCCTGTGCCCTCCTGCCTCCGGAGGGGCCAGACTTACATCCTGCCCATCCAGATAAACCCGGTCAACGACCCACCCCAAATCATCTTCCCCCACGGCAGCCTCATGGTGATCCTGGAACACACACAGAA---GCCCCTGGGGCCCGAGGTCTTCCAGGCCTACGACCCAGACTCTGCCTGCGAGGGCCTCACCTTCCAGCTCCTTGGCACCGCCCCGGGCCTGCCGGTGGAGCGCCAGGAG-------CAGCCCGGGGAGCCAGCCACCGAGTTCTCCTGCCGGGAGCTGGAGGCGGGCGGCCTGGTCTACGTGCACCGGAGCGGGCCCGCCCAGGACCTGACGTTCCGCGTCAGCGACGGGCTGCAGGCCAGCGCTC---CGGCCACGCTGCAGGTGGTGGCGGTCCGGCCCAGCATCCGGGTCCGCCACAACACGGGGCTGCGCCTGGCCCAGGGCTCCGCCGCCCCGGTGCTGCCCGCCAATCTGTCGGTGGAGACCAACGCGGTGGGGCAGGATGTGAGCGTGCTGTTCCGGGTCGCCGCGGCCCTGCGGTTCGGGGAGCTGCAGAAGCAGGGCGCGGGGGGCGCCGAGGGCGCGGAGTGGCGCCCGGTGCAGGCCTTCCAGCAGCGGGACGTGGAGCAGGGCCGCGTGAGGTACCTGAGCACCGACCCGCAGCACCGCACGGAGGACGCCGTGGAGCGCGTGGCCCTGGAGGTTCAGGTGGGCCAGGAGACCCTGAGCAATCTGTC-CTTCCTGGTGACGATCCAGAGAGCCACCGTGCGGCTGCTGCGGCTCGAGCCCCT
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=2004810.000000
s hg38.chr15_KI270850v1_alt    252494  980 +    430880 GCACACTCAGAACACCCAGCAGGAGGCCCTCACCACAGCCCACCTGGAGGCCACCCTGGAG------------GA---GGCAGGCCCAAGCCCCCCAACCTTCCACTGTGAGGTGGTTCAGGCTCCCAGGAAAGGCAACTTTCAACTACAGGGCACGATGCTGTCAGACGGTCAGGGCTTCACCCAGGATGACGTACAGGCTGCAGAGGTGACCTATGGGGCCATGGCACATGCCTCAGTGGCAGTGGAGGACACCTTCTGTTTCCATGTCACAGCTCCACCATATTTCTCCCCACTCTGTACCTTCTCCATCCATATTGGCGGTGACCCAGACATGCCTG---------------TCCTCGTGGTGCCCGAGGGTGGTGGGTGTGTCCTCTCTGCTGACCAGCTCTTCATCAAGAGTCTCAACAGTGCCAGGTACCTCTATGAGGTCATGGAGCAG-CCCCGCCATGGGAGGTTGACTTGGCGTGGGACACAGGACAAGATCACTATGGTGACATCCTTCACCAATGGAGACCTGATGCATGGCCAGCTGGTCTAGCAGCATGATGACTCCGAGATCACAGAAGATGATATCCCATTTCCTGCTG-CCATCAGGACCAGAGCAGTGGTGACGTGGCCTGGGAGGAGGTATGGGGTGTCTTCTGAGTGGCCATCCAGCCTGTGAATGACCACGCCCCTATGCAGACCATCAGCTGCGTCTTCCACGTGGCCTGGGGTAGGTGGCGGCTGCTGACTACAGACAACATGGCCTTCAGCAATGCTGATTCGGGCTTTGCTGAGGCCCAGCTGGTGCTGACCCACCAGGACCTCCTCTCTGGCAGTATCATGGCCACGGATGAGCCCATGCAGCCCATCTGCCGCTTCATCCAGGAGGGGCCTCAGGAAGAGGCGAGTCCTGTTCACACACT--CAGGCTGACCACGGCTGGATCCCGCTGCAG--GTGTCCGATGGGCAGCACCAGGCCATCACGGTGCTGGAGGTGC-AGGCCTTGGAG
s rheMac3.chr7              116081354  986 - 170124641 GCACACTCAGAACACCCAGCAGGAGACCCTCACCACAGCCCACCTGGAGGCCACCCTGGAG------------GA---GGCAGGCCCAAGCCCCCCAGCCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAACCTTCAACTACAGGGCACGAGGCTGTCAGACGGTCAGGGCTTCACCCAGGATGACATACAGGCTGGCCGGGTGACCTATGGGGCCACGGCACGTGCCTCGGAGGCAGTCGAGGACACCTTCCGTTTCCGTGTCACAGCTCCGCCATATTTCTCCCCGCTCTATACCTTCCCCATCCACATTGGTGGTGACCCAGACGCGCCCGTCCTCACCAATGTCCTCCTCATGGTGCCCGAGGGTGGTGAGGGTGTCCTCTCTGCTGACCACCTCTTTGTCAAGAGTCTCAATAGTGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCATGGGAGGTTGGCTTGGCGTGGGACACGGGACAAGACCACTATGGTGACATCCTTCACCAATGAAGACCTGTTGCGTGGCCGGCTGGTCTACCAGCATGATGACTCCGAGACCACAGAAGATGATATCCCATTTGTTGCTACCCGCCAGGGTGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGAGTCTTCCGGGTGGCCATCCAACCCGTGAATGACCACGCCCCTGTGCAGACCATCAGCCGCGTCTTCCATATGGCCCAGGGTGGGTGGCGGCTGCTGACTACAGACGACGTGGCCTTCA--------GACTCGGGCTTTGCTGACGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATCGTGGCCGTGGATGAGCCCACGCGGCCCATCTACCACTTCACCCAGAAGG--CCTCAGAAAGAGGCGAGTCCTGTTCATGCGCT--TGGGCTGATCATGGCTGGATCTAGCTGCAG--GTGTCCGATGGGCAACACCAGACCACTGCGCTGCTGAAGGTGC-AGGCCTCGGAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106517259  990 - 171882078 GCACACTCAGGACACCCAGCATGACACCCTCACCACAGCCCACCTGGAGGCCACTCTGGAG------------GA---GGCAGGCCCAAGCCCTCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAGCCTTCAACTACAGGGCACGAGGCTGTCAGGCGGCCAGGGCTTCACCCAGGATGATGTACAGGCTGGCCAGGTGACCTGTGGGGCCACGGCACGCACCTCAGTGGCAGTGGAGGACACCTTCTGTTTCTGTGTCACAGCTCCACCATATTTCTGCCTGCTCTGTACCTTCTCCATCCATACTGGCGGTGACCCAGACATGCCTGTCCTCACCAATG---TCCTCGTGGTGCCTGAGGATGATGAGGGTGTCCTGTCTACTGACCAGCTCT---TCCAGAGTCTCAACAGTGCCGGCTACCTCTATGAGGTCATGGAGTGGCCCCCGCCATGGGAGGTTGACTTGGCATGGGACACAGGACAAGACCACTGTGGTGACATCCTTCACCAATGGAGACCTGTTGTGTGGCCGGCTGGTCTACCAGCATGATGATTCTGAGGTCACAGAAGGTGATACCCCATTTGTTGCTACCCGCCAGGATGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCAAGTGGCCATCCAGCCCGTGAATGACCACGCCCCTATGCAGATCATCAGCCACGTCTTCCATGTGGCCCGGGGTAGGTGGCGGCTGCTGACTACAGTCGACGTGGCCTTCAGCAGTGCTGATTCGGGCTTTGCTGATGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATCATGGCTGTGGATGAGCCCATGCAGCCCATCTACTGCTTCATCCAGGAGGGACCTCAGGAAGAGGTGAGTCCTGTTTGCACACT--GGGGCTGACCAC-GCTGGATCCAGCTGTAG--GCGTCTGATGGGCAGCACCAGGCCACCACTCTGCTGGAGGTGC-AGGCCTTGGAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102486330  989 - 162156779 GCACACTCAGGACACCCAGCAGGACACCCTCATCACAGCCCACCTGGAGGCCTCTCTGGAG------------GA---GGCAGGCCCAAGCCCTCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAGCCTCCAACTACAGGGCATGAGGCTGTCAGGCGGCCAGGGCTTCACCCAGGATGATGTACAGGCTGGCCAGGTGACCTGTGGGGCCACGGCACGCACCTCAGTGGCAGTGGAGGACACCTTCTGTTTCTGTGTCACAGCTCCACCATATTTCTCCCTGCTCTGTACCTTCTCCATCCATACTGGCAGTGACCCAGACATACCTGTCCTCACCAATG---TCCCCATGGTGCCTGAGGATGATGAGGGtgtcctctctactgacc-tctct---actgtcctctcAACAGTGCCGGCTACCTCTATGAGGTCATGGAGTGGCCCCCGCCATGGGAGGTTGACTTGGCATGGGACACAGGACAAGACCACTATGGTGACATCCTTCACCAATGGAGACCTGTTGTGTGTCCGGCTGGTCTACCAGCATGATGATTCTGAGGTCACAGAAGGTGATACCCCATTTGTTGCTACCCGCCAGGATGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCAAGTGGCCATCCAGCCCGTGAATGACCATGCCCCTATGCAGATCATCAGCCACGTCTTCCATGTGGCCCAGGGTAGGTGGCGGCTGCTGACTACAGTCGACGTGGCCTTCAGCAGTGCTGATTTGGGCTTTGCTGATGCCCAGCTGGTGCTGACCCACAAGGACCTCCTCTTTGGCAGTATCATAGTCGTGGATGAGCCCATGCAGCCCATCTACTGCTTCATCCGTGAGGGACCTCAGGAAGAGGTGAGTCCTGTTTGTGCACT--GGGGCTGACCAC-GCTGGATCCACCTGCAG--GCGTCTGATGGGCAGCACCAGGCCACCACTCTGCTGGAGGTGC-AGGCCTTGGAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7711534  989 +  58131712 GCACACTCAGAACACCCAGCAGGAGACCCTCACCACAGTCCACCTGGAGGCCACCCTGGAG------------GA---GGCAGGCCCAAGCCCCCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAACCTTCAACTACAGGGCACGAGGCTGTCAGACGGTCAGGGCTTCACCCAGGATGACATACAGGGTGGCCGGGTGACCTATGGGGCCACAGCACGTGCCTCGGAGGCAGTCGAGGACACCTTCCATTTCCGTGTCACAGCTCCGCCATATTTCTCCCCGCTCTATACCTTCCCCATCCACATTGGTGGTGACCCAGAGGCGCCCGTCCTCACCAATGTCCTCCTCGTGGTGCCTGAGGGTGGTGAGGGTGTCCTCTCTGCTGACCACCTCTTTGTCAAGAGTCTCAATAGTGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCATGGGAGGTTGGCTTGGCGTGGGACACCGGACAAGACCACTATGGTGACATCCTTCACCAATGAAGACCTGTTGCGTGGCCGGCTGGTCTACCAGCATGATGACTCCGAGACCACAGAAGATGATATCCCATTTGTTGCTACCCGCCAGGGTGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCGGGTGGCCATCCAACCCGTGAATGACCACGCCCCTGTGCAGACCATCAGCCGCGTCTTCCATGTGGCCCGGGGTGGGTGGCGGCTGCTGACTACAGACGACGTGGCCTTCA--------GACTCGGACTTTGCTGACGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATCGTGGCCGTGGATGAGCCCACGTGGCCCATCTACCGCTTCACCCAGGAGG-ACCTCAGAAAGAGGCGAGTCCTGTTCATGCACT--TGGGCTGATCATGGCTGGATCCAGCTGCAGGTGTGTCCGATGGGCAACACCAGGCCACTGTGCTGCTGGAGGTGC-AGGCCTCGGAG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114230045  995 - 132174527 GCACACTCAGAACACCCAGCAGGAGGCCCTCACCACAGCCCACCTGGAGGCCACCCTGGAG------------GA---GACAGGCCCAAGCCCCCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAATCTTCAACTACAGGGCACGAGGCTGTCAGATGGTCAGGGCTTCACCCAAGATGACCTTCAGGCTGGCCGGGTGACCTATGCGGCCACAGCACGTGCCTCGGAGGCAGTCGAGGACACCTTCCGTTTCCGTGTCACAGCTCCACCATATTTCTCCCCGCTCTATACCTTCCCCATCCACATTGGCGGTGACCCAGACGCACCTGTCCTCACCAACGTCCTCCTTGTGGTGCCTGAGGGTGGTGAGGGTGTCCTTTCTGCTGACCACCTCTTTGTCAAGAGTCTCAACAGTGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCATGGGAGGTTGGCTTGGCGTGGGACACAGGACAAGACCACTGTGGTGACATCCTTCACCAATGAAGATCTGTTGCGTGGCCGGCTGGTCTACCAGCATGATGACTCCGAGACCACAGAAGATGATATCCCGTTTGTTGCTACCCGCCAGGGCGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGAGGTGTCTTCAGAGTGGCTATCCAGCCCGTGAATGACCACGCCCCTGTGCAGACCATCAGCCGCGTCTTCCATGTGGCCCGGGGTGGGCGGCGGCTGCTGACGACTGATGACGTGGCCTTCAGCGACGCTGACTCAGGCTTTGCTGACGCCCAGCTAGTGCTGACCCGCAA-GACCTCCTCTTTGGCAGTATCGTGGCCGTGGATGAGCCCACGCGACCCATCTACCGCTTCACCCAAGGAGGACCTCATGAAGAGGCAAGTCCTGTTTGTGCACTCAGGGGCTGACGAT-GCTGGATCCAGCTGCA---GTGTC-GACGGACAGCACAAGGCAACCGCGCTGCTGGAGGTGCAAGGCCTCAGAG
i calJac3.chr10             C 0 M 1176
s mm10.chr9                  56887360 1009 + 124595110 GCATACACAGAACCCTCATCAGGAGACCCTCACCCCAGCCCACCTAGAGGCATCCCTGGAGGAAGAGGAGGAAGA---GGGAAGCCCACAACCTCATACCTTCCACTATGAGTTGGTTCAGGCCCCCAGAAGAGGCAACCTCCTGCTTCAGGGTACAAGGCTGTCAGACGGCGAGAGCTTCAGCCAGAGTGACCTGCAGGCCGGTCGGGTGACCTACAGGGCCACAATGCGGACCTCTGAGGCAGCCGATGACTCCTTCCGTTTCCGGGTCACATCCCCACCCCATTTCTCCCCGCTCTACACATTCCCCATCCACATTGGTGGTGACCCAAATGCTCCCGTCCTCACTAACGTCCTTCTCATGGTCCCCGAGGGAGGGGAGGGCGTGCTGTCTGCCGACCACCTCTTCGTCAAGAGTCTCAACAGCGCCAGCTATCTCTATGAGGTGATGGAGCAG-CCTCACCATGGCAAGTTGGCTTGGAGGGACCCAAAGGGGAAGTCCACCCCAGTGACATCCTTCACTAATGAGGACCTACTTCATGGCCGACTGGTCTACCAGCACGATGACTCTGAGACCATAGAGGATGATATCCCGTTTGTGGCCACACGCCAGGGAGAGGGCAGTGGTGACATGGCCTGGGAGGAGGTGCGTGGTGTCTTCCGAGTGGCCATCCAGCCTGTGAATGACCACGCCCCTGTGCAGACCATTAGCCGTGTCTTCCACGTGGCCCGGGGTGGACAGCGACTGCTGACTACAGATGATGTAGCCTTCAGCGATGCTGATTCAGGGTTCAGTGATGCGCAACTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGCATTGTGGCTATGGAGGAGCCCACGAGGCCCATCTACCGGTTCACCCAAGAGG-ATCTCAGGAAGAAGCAAGTCCTGTTTGTGCACTCGGGGGCCGACCACGGCTGGCTCCAGCTGCAG--GTGTCTGATGGGCAGCACCAGGCTACTGCCATGCTGGAGGTCC-AAGCCTCAGAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1737461 1000 -  40214260 GCGCACCCACACCACGCGGCAGGAGGCGCTCACCGGCGCGCACCTGGAGGCCGCTCTGGAG------------GAGGGGGCGGGCCCCAGCCCCACCACCTTCCACTACGAGCTGGTTCAGGCCCCCAGGAAGGGTAACCTCAGGCTGCAGGGCGCCCGGCTGTCCGAGGGGCAGGGCTTCACCCAGGATGACCTGCAGGCCGGCCGGGTGACCTACGGGGCCACGGCGCGCACCTCGGAGACCGTGGAGGACGCCTTCCGTTTCCGCGTCACGGCTCCGCCACATTTCTCCCCGCTCTACACCTTCCCCATCCACATCGGGGGTGACCCCGACGCCCCCGTCCTCACCAACGTCCTCCTCTCCGTGCCCGAGGGAGGCGAGGGCGTCCTCTCCGCGGAACACCTGTTCGTCAAGAGCCTCAACAGCGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCACGGGCGGCTGGTCTGGAGGGGGGCGCAGGACGAGGCCACCGCGGTGACGTCCTTCACCAACGAGGACCTGCTGCAGGGCCGGCTGGTCTACCAGCATGACAACTCCGAGACCACGGAAGACGACATCCCCTTCGTGGCAACCCGCCAGAGTGAGGGCAGCGGCGGCCTGGCCTGGGAGGAGGTCCGGGGCGTCTTCCGCGTGGCCATCCAGCCCGTGAACGACCACGCTCCCGTGCAGACCGTCAGCCGCGTCTTCCACGTGGCCCGGGGCGGGCGGCGGCTGCTGACGACCGACGACGTGGCCTTCAGTGACGCCGACTCCGGCTTCGCCGACGCGCAGCTGGTGCTGACCCGCAAGGACCTTCTCTTCGGCAGCATCGTGGCCGCGGACGAGCCCACGCGGCCCATCTACCGCTTCTCCCAGGAGG-ACCTCCGGAAGAGGCGCGTCCTGTTCGTGCACTCCGGGGCCGACCGCGGCTGGATCCAGCTGCAG--GTGTCCGACGGGCGGCACCAGGCCACCGCGCTGCTTGAAGTGC-AGGCATCCGAG
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140    0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=273016.000000
s hg38.chr15_KI270850v1_alt    253474 186 +    430880 CCTTACCTCTGTGTGGCCAATGGCTCCGGCCTCATGGTTCCTCAAGGAGGCCAGGGTACCATCAACATGGCCGAGCTCCACCTGGGCACCAACCTCAACATCTGCAGTAGGGATGAGGCCCACTACCACGTCACAGACAGCCCTCACTGGGGACAGTTGCTCCAAGCCACTCAGCCAGCCACAGCC
s rheMac3.chr7              116082340 186 - 170124641 CCCTACCTCCTTGTGGCCAACGGCTCTGGCCTTGTGGTCCCTCAAGGAGGTCAGGGCACCATTGACACAGCTGAGCCCCACCTGGACACCAACCTTGACATCTGCAGTGGGGATGAGGTGCACTACCATGTCACAGCCGGCCCTCTCTGGGGGCAGTTGCTCTGGGCCACTCAGCCAGCCACAGCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106518249 186 - 171882078 CCCTACCTCTCTGTGGCCAGTGGTTCCGGCCTCATGATCCCTCAAGGAGGCCAGGGTACCATCAACACGGCCGAGCTCCACCTGGACACCAACCTTGACATCCACAGTGGGGATGAGATCCACTACCACGTCACAGAGTGTCCTCGCTAGGGACAATTGCTCCGGGCCACTCAGCCAGCCACAGTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102487319 186 - 162156779 CCCTACCTGTGTGTGGCCAGTGGCTCTGGCCTCATGGTCCCTCAAGGAGGCCAGGGTACCGTCAACACGGCCGAGCTCCACCTGGACACCAACTTCGACATCCACGGTGGGGATGAGATCCACTACCGTGTCACAGAGTGTCCTCGCTAGGGACAATTGCTTCGGGCCACTCAGCCAGCCACAGTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7712523 186 +  58131712 CCCTACCTCCGTGTGGCCAACGGCTCTGGCCTTGTGGTCCCTCAAGGAGGTCAGGGCACCATTGACACAGCTGAGCTCCACCTGGACACCAACCTTGACATCCGCAGTGGGGATGAGGTGCACTACCATGTCACAGCCGGCCGTCGCTGGGGGCAGTTGCTCTGGGCCACTCAGTCAGTCACAGCC
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  56888369 186 + 124595110 CCCTATCTTCACGTAGCCAATAGTTCTAGTCTCGTGGTTCCTCAAGGAGGCCAGGGCACCATTGACACTGCTGTGCTCCAGCTGGACACCAACCTGGACATACGAAGTGGAAATGAGGTCCACTACCATGTAACCGCTGGTCCTCAGTGGGGGCAGCTGCTCCGGGATGGCCAGTCAGTCACCTCC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1738461 186 -  40214260 CCCTATCTCCGCGTGGCCAATGGCTCCAGCCTCGTGGTCCCTCAGGGGGGCCAGGGCACCATCGACACAGCCGTGCTCCGCCTGGACACCAACCTAGACATTCGCAGCGGGGATGAGGTCCGCTACCGTGTCACAGCCGGCCCGCACTGGGGGCAGCTGCTCCGGGCCGGCCAGCCGGCCACAGCC
i canFam3.chr30             C 0 C 0
e calJac3.chr10             114231040 1176 - 132174527 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=1391020.000000
s hg38.chr15_KI270850v1_alt    253660 1041 +    430880 TTCTCTCAGCAGGACCTGCTGGTTGGGGCTGTTTTCTATGGCCACAATGGCAGCCTCAGCTCCCGCAACACCCTGGCCTTCTCAATGGATGTGGGACCAGTGCACACAGATGCCACCCTACAAGTGACCATTGCCCTAGAGGGCCCAGTAGCCCCACTGAAGCTGGCCCAGCACAAGGAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGCTGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GT-GTGGACCAGGTAGAGGG---CCTTCCTCCCAGCCTCCATGCCGGGAACACATGTG-ACTTGGGCTGTACCTGTGGTGGTCCCAG-CTTGTGTGTGTGCACGTGCCTCAGATGTGCTCCCATATATGTTGTGTTCCCAAGAGTTTCTGGGGAGCTTGCTGTACACCCATCCTCCTGGGAGTGGTGTGTGCCTCTAGAGCTGGTGTCCACTCATGTCCATGGCATGGCTGAGCATGcagattcctggacgccacccagccctacagaatctctgaagtggagcccgagaatctgcattgcagtca----gttccctggGAGGGCATCACGGGTCCTGAACTTTTGGGATTGCTGGCCGTGGAGACAGGCCGCTGCCTCTCAGACCCCTGTGTACCCCGCTCTCTTCTCAGAGCCCAGACCAGGACCAGGAGGGTCTGTCAAGGGCTTCTGCTCACCCAGGAACCCCACAGAGCAGCCACGGGCCTTCCAGAGATCT-----------GACATGCCCTGTGACCTCAGGCCAGTCCTTGCCCGCTCTCAGCCTTACTCTTCCACACT----GCTTATTTCGGAGACCCTTCT-GGTCTGCA--TCTGGAGCTTggggcccatggtgagccagcagatctggcatcaggaa--ggcct--catgggaggaggcagtgtttgggccgggctctgaagagtacaggccattaggagcagagaatggggagtggtattccacgcaaaaggaacattccggccgaaggcacaaaa-caggaatgtgagtttggAGGCA--GTTTAGCCTCTTGTGGATGGCCCA
s rheMac3.chr7              116082526 1041 - 170124641 TTCTCCCAGGAGGACCTGCTAGACGGGGCCATTCTCTACGGCCTCAATGGCAGACTCAGAACCCGTGACACCCTGATCTTCTCAATGGAAGTGGGGCCAGTGCACACGGATCCCACGCTACAAGTGACCATTGCCCTAGAGGGCCCACTGGCCCCACTGAAGCTGGTCCGGCACAAGAAGATCTATGTCTTCCAGGGAGAGGGAGCTGAGATCAGAAGGGACC--------------AGCTGGAGGTGGTGAGCGGT-GGTGTGGGCCAGGTAGAGGG---CCTCCGGCCCAGCTTCCATGCCAGGTACACATGTG-ACTTCGGCTGTGGCTGTGGTGGTCCCAG--TTGCATGTGTGCACAGGTCTCAGATGTGCTCCCGTATATGTTGTGCTCCCAAGAGTTTCTGGGGAGCTTGCTGTACACCCATCCTCCTGGGAGTTGTGTGTGCCTCCAGAGTTCGTGTCCACTCGTGTCCAAGGTGTGGCTGAGCatgcagattcccgggccccaccaagccctactgaatctctgaagtggagcccaagaatctgcattGCAGTCA----GTTTCCTGGGAGGGCATCACGGGTCCTGAACTTTGGGGATTGCTGGCCATGGAGACAGGTGGCTGCTCTTCAGATCCACATGTTCCCCGCTATTTTCTCAGAGCCCAGACCAGGACTAGGAGGGTCTGTCAAGGGCTTCTACCCACCCAGGAACCCCACAGAGCAGCCACGGGTCCTCCAGCAGGCTCACTCCAGCAGGACTTGCCCTGTGACCTCAGGCCAGTCCTTGCCCG--CTGAGCCTTACTCTCCCACACTACTAGCTCATTTCGGGGACCCTTCT-GGTCTGCATGTCTGGAGCTTggggcccacggcaagccagcagatctggcatcaggaa--ggcct--catgggaggaggcagtgtttgggccgggctctgaagagcacaggccattgggagcagagaatggggagtggtattccaggcaggaggaacattctggg-aaaggcatagaa-caggaatgtgagtttgggggtg--gtttagcctcttgcgactggccca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106518435 1048 - 171882078 GTCTCCCAGCAGTACTTGCTGCATGGGGCCATTCTCTACGGCCACAATGGCAGCCTCAGACCCCGCAGCACCCTGGCCTTCTCAATGGAAGTAGGGCCAGTGCACACAGATGCCACACTACAAGTGACTGTTGCCCTAGAGGGCCCACTAGCCTCACTGAAGCTGGCCCGGCACAAGAAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAGAGACCAGCTGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GTAGTGGACCAGGTAGAGGG---CCTCCCGCCCAGCCTCCATGCCAGGTACACATGTG-ACTTGGACTGTGGCTGTGGTGGTCCCAG-ATTGTGTGTGTGCATGTGTCTCAGATGTGCTACTGTATATGTTGTGTTCCCAAGAGTTTTTGGGGAGCCTGCTGTACACCCATCCTCCTGGGAGTTGTGTGTGCCTCTAGAGGTTGTGTCCACTCGTGTCCATGGCGTGGCTGAGCATGcagattcctgcaccccacccaggcctgcagaatctctgaagtggagcccgagaatctgcattgcagtca----gttccctggGAGGGCATCACGGGTCCTGAACTTTGGGGATGGCTGGCCGTGGAGACAGGCCACTGCGCCTCAGACCCCCATGTATCCCGCTCTCTTCTCGGAGCCCAGACCAGGACTAGGAGGGTCTGTCAAGGGCTTCTGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTCCAGCGAGCTCACT-------GACATGCCCTGTGACCTCAGGCCAGTTCTTGCCTGCTCTCAGCCTTATTCTCCTACACT----GCTCATTTCGGGGACCCTTCT-GGTCTGCATGTCTGGAGCTTggggcccacggcaagccagcagatctggcatcaggaa--ggcct--catgggaggaggctgtgtttgggccgggctctgaagagcacaggccattgggagcagagaatggggagtggtattccaggcaaaaggaacattccgggcaaaggcacagaa-caggaatgtgagtttggGGGTG--GTTTAGCCTCTTGTGGATGGCCCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102487505 1048 - 162156779 GTCTCCCAGCAGTACTTGCTGCATGGGGCCATTCTCTACGGCCACAATGGCAGCCTCAGACCCCGCAACACCCTGGCCTTCTCAATGGAAGCAGGGCCAGTGCACACAGATGCCACACTACAAGTGACTGTTGCCCTAGAGGGCCCAGTAGCCCCACTGAAGCTGGCCTGGCACAAGAAGATCTACATATACCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGATGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GTAGTGGACCAGGTAGAGGG---CCTCCCGCCCAGCCTCCATGCCAGGTACACATGTG-ACTTGGGCTGTGGCTGTGGTGGTCCCAg-gttgtgtgtgtgcacgtgtctcAGATGTGCTCCTGTATATGTTGTGTTCCCAAGAGTTTTTGGGGAGCCTGCTGTACACCCATCCTCCTGGGAGTTGTGTGTGCCTCTAGAGGTCGTGTCCACTCGTGTCCATGGCGTGGCTGAGCATGCAGATTCCTGGACCCCACCCAGCCCTACAGAATCTCTGAAGTGAAGCCCAAGAATCTGCATTGCAGTCA----GTTCCCTGGGAGGGCATCACGGGTCCTGAACTTTGGGGATTGCTGGCCGTGGAGACAGGCCACTGCGCCTCAGACCCCCATGTATCCCGCTCTCTTCTCGGAGCCCAGACCAGGACTAGGAGGGTCTGTCAAGGGCTTCAGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTGCAGCGAGCTCACT-------GACATGCCCTGTGACCTCAGGCCATTTCTTGCCCGCTCTTGGCCTTACTCTCCTACACT----GCTCATTTCGGGGACCCTTCT-GGTCTGCATGTCTGGAGCTTGGGGCCCACGGCAAGCCAGCAGATCTGGCATCAGGAA--GGCCT--CATGGGAGGAGGCAGTGTTTGGGCCGGGCTCTGAAGGGCACAGGCCATTGGAAGCAGAGAATGGGGAGTGGTATTCCAGGCAAAAGGAACATTCCGGGCAAAGGCACAGAA-CAGGAATGTGAGTTTGGGGGTG--GTTTAGCCTCTTGTGGATGGCCCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7712709 1038 +  58131712 TTCTCCCAGGAGGACCTGCTAGACGGGGCCATTCTCTACCGCCTCAATGGCAGCCTCAGAACCCGTGACACCCTGATCTTCTCAATGGAAATGGGGCCTGTGCACACGGATGCCACGCTACAAGTGACCGTTGCCCTAGAGGGCCCACTGGCCCCACTGAAGCTGGTCCGGCACAAGAAGATCTATGTCTTCCAGGGAGAGGCAGCTCAGATCAGAAGGGGCC--------------AGCTGGAGGTGGTGAGCGGG-GGTGTGGGCCAGGTAGAGGG---CCTCCCCCTCAGCCTCCATGCCAGGTACACATGTG-ACTTGGGCTGTGGCTGTGGTGGTCCCAG--TTGCATGTGTGCAGGGGTCTCAGATGTGCTCCCGTATATGTTGTGCTCCCAAGAGTTTCTGGGGAGCTTGCTGTACACCCATCCTCCTGGGAGTTGTGTGTGCCTCCAGAGGTCGTGTCCACTCATGTCCATGGCGTGGCTGAGCatgcagattcctgggccccaccaagccctactgaatctctgaagtggagcccaagaatctgcgttGCAGTCA----GTTTCCTGGGAGGGCATCATGGGTCCTGAACTTTGGGGATTGCTGGCCATGGAGACAGGTGGCTGCTCTTTAGATCCACATATTCCCTGCTATTTTCTCAGAGCCCAGACCAGGACTAGGAGGGTCTGTCAAGGGCTTCTACCCACCCAGGAACCCCGCCGAGCAGCCACGGGCCCTCCAGCAGGCTCACTCCAGCAGGACTTGCCCTGTGACCTCAGGCCAGTCCTTGCCCG--CTCAGCCTTACTCTCCCACACT----ACTTATTTCGGAGATCCTTCT-GGTCTGCATGTCTGGAGCTTGGGGCCGACAGTGAGCCAGCAGATCTggcatcaggaa--ggcct--tgcggaaggaggcagtgtttgggccaggctctgaagagcacaggccatcggtagcagaaaatggggagtggtattccaggcaggaggaacattccagggaaaggcatagaa-caggaatgtgagtttgAGGGTG--GTTTAGCCTCTTGTGATTGGCCCA
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114232219 1004 - 132174527 TTTTCCCAGCAGGACTTGCTTGACGGGTCCA-TCTCTACAGCCACAATGGCAG-CTCAGCCCCCGAGACACCTG---CTTCTCCGT-GAAGCGGGTCCAGTGCACACGGATG-CACCCTACAAGTGACCATTGCCCTGGAGAGCCCACTGGCCCCACTGAAGCTGGTCCGGCACAAGAAGATCTACGTCTTCCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGCTGGAGGTAAGGAGCTAGGGGCAGTGAGCGGG-GGTGTGGGCCAGGTAGA-GG---CCTTCCTCCCAGCCTCCATGCCAGGTACACACATG-ACTTGGGCTGTGGCTGTGGCGGCTCCAG-GTTGC--GTGTGCAGAGGCCTCGGATGTGCTCCTGTCTGTGTTGTGTTCCTAAGAATTTCTGGGGAGCTTGCTGTAC-CCCATCCTCCTGGGGGTTATGCATGCCTCCGGAGGTCGTG-------------ATGGTGTGGCTGAGCatgcagattcctgggtcct-cccagccccacagaatctctgaggtggagcccgagaatctgcattgcagtca----gtttcctgggaaggtatcacaggtcctgagctttggggattgctgACCGTGGAGACAGGCCACTGCCCCTCAGACCTCCATGTCCCCCACTCTTTTCTCAGAGCCCAGACTGGGTCCAGGAGGGTCTATGAAGGGCTTCTGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTCCAGCGGGGTCAC--------AACTTGCGCTGTGACCTCAGGCCGGTCCCTGCCCGCTCGCGGCCTCACTCTCCTACACT-----------------CTCCTTCT-GGTCTGCACATCTggagcttggggcagatggc-agccagcagatctggtgtcaggat--gggct--cctgggatgaggcagcatttgggccgagctctgaagagcacaggccatctg-agcagaggataggaagtggtatttcaggcagaaggagcattccgggcaaaggcacagag-caggaatgtg---tttggggta--gtttagcctcttgtggctgaccca
i calJac3.chr10             M 1176 C 0
s mm10.chr9                  56888555  890 + 124595110 TTCTCCCAACGGGACTTGCTCGATGGGGCCATCCTCTACAGCCACAATGGCAGCCTCAGCCCCCAAGACACCCTGGCGTTTTCTGTGGCAGCAGGGCCAGTACACACTAACACCTTCCTACAAGTGACCATTGCCCTCGAGGGTCCCCTGGCCCCACTGCAACTGGTGCAGCACAAAAAGATCTACGTCTTCCAGGGGGAAGCGGCTGAGATCAGAAGGGACCAGCTAGAGGTA---------AGGCAGTGCACGAG----GCCTGCCAAGCTGAGGG---T----------ACTTCCATG--AGG---------------GGGGCGTTCCTGTGGGGATGCAGG--TCTTAGGAGTATTACAGCTTCAGTAGT-CACCTGTATGTGTTGTAGTTCTGCATGTGTCTAGGAA------CATACACCTA-CCTGTTAAGTGTCACGCA--CCTCCAGAGATCACATATACATGTGTCCTTGCTATGGATAGCCGTGTAAAAT-CTGGGTTCCAGCCAGATCCACAGAATCTCTGAAGCAGAGACCAAGAGTGTATATC-CTGTCA---CAGTCCCTATGAGGTTACCATGAGGGGTGACCTTTAGGAG---------------------CGCTGCCCCTCAGATCCACAGGTCCTTAGCTCTTTCCCTAGACTCCACAACAGAACTGTGAGGGCCTGT-GATGGTGTCTGTTAACTCAGGGAGCTCACAGCGCAAT-----GCTGACCAGCTGGCTCACT-------GCCTTA--CTGTGA----AGGCC--------------------------------CAGT----------TTTGAGGCCCTTCCA-GTTCTGAGTGTTTGGACTTTGAGAAAGACCATGACTAAACA-------TGTCAGGAAGTGTCCA--CACCAGAGGAGGCAGCATATGaaccaagctttggtg-gtgcacacctttaatcccagcactcaggaggcag------aggcaggcagagctctt--------------------------tgaattcaaggcca--acctggtctattaagagagttcca
i mm10.chr9                 C 0 I 537
s canFam3.chr30               1738647  821 -  40214260 TTCTCCCAACAGGACCTGCTGGACGGGGCCGTCCTCTACAGCCACAACGGCAGCCTGAGCCCGCAGGACACCCTGGCCTTCTCCGTGGAGGCAGGGCCTGTGCTCACGGATGCCACCCTGCAGGTGACCATTGCCTTGGAGGGGCCATTGGCCCCACTGCATCTGGTCCAGAACAAGAAGATCTACGTCTTCCAGGGGGAGGCAGCTGAGATCAGAAAGGATCAGCTGGAGGTAAAAGGCCGAGGG--GCGAGTGGAAGTCATAGGCCAGAGAAGGGGGCCCCTTCCATCCAGCCTTCACGCCCTGTGTGCGTGGACGTTTGGGGGGTACCGGTGGGGACTCCTGGGTTGGGTG-GTGTCCGCGCTTTGGGGATGTGCCTG-----------------ACGGTCTCCGGGGAGTTTGC---------------CTCAGAGTTATGGGGGCCTCCACCTGTCAGGTGCACACATGTGCGTGCTACGGAT-----------------------------------------------------TCGGAGAATCTGTTTTCTAATAAATTCGTTCCCTGGGGGATTCTCCTGGGC-----ACCTTGAGGA-----------------------CCGGGCCTC-------------------------------------------------AGGACCTGGGGAGAGCCGCTGACCATCCAGGAA--TCAGAGAGCAACCA--------------GGCCTACT-------GACTCG----GTGG---------------------------------------CACACG----GCCGATTTCTGAGCCCCTGGTGGGTCCAGCTGCCTGGA-TTTGGGGCAGACGGTGGCTGGCCCTGTCTGGCATCAGAAA--GGCTTGGCCTTGACGGAGGCGGCACTGGAGTCCGGCTTTGCAGAGTCTGGGGTTTCAGTAGCAGGGGATGA-----------------AAGGACACCCCTCCAGGCAGAGGCACAGGATCAGGGATGTGAG-CTGGGGGTGGTGTGTGGCCTCCTGCAGCCGGGCCA
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140    0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=479534.000000
s hg38.chr15_KI270850v1_alt    254701 531 +    430880 TCAGGTGAGGGAGCCCATGTGGCCTTTGGGGTGTGAGCTCTGTAGGGCCTGTGCTGGGGGTGCCTGTGCCTCTAGGAGGGGTGGGGTGGGGTGGGGCAGGGCACCCTCTGATGGTCCTGGGTGGTAATAGCAGGGGTTGGGGAGGATGCTGCCAGCAAACCAGCCACAGGCCTGAACAGATCCTGAGCAGGGGG-------------------CCTGTGTGC-GTGTGCACACACGCATGTGTACCTGTACCTGTGTGA--CTGCGTCAGCATCTGATGAACTCATATGTCTGTGTCACTGAGTCTGGGGACATGTGATTATGCACCTCCCTGAGGGAGTGCATCTCAAGCTGT-TGACCGACACCCCGTAACCATGTGTGGGGTGGGTATTAACATGTga-----------------------c---cagctgg-ggcaacccagtgaaaccccatctctacacaaaaca--tttaaaaattagccaggcatggtggcacatgactgtggtccccagctacttgggaggctgag----------cccttgagcctaggacgttgaggctgcagggagctgtgatcacaccac
s rheMac3.chr7              116083567 564 - 170124641 tcaggtgaggaagCCCATGTGGCCTTTGGGGCATGAGCTCCATAGGGCCTGGGCTGAAGGTGGCTGTGCCTCCAGGAG---------GGGGTGGGGCAGGGCGCCCTCTGATGGTCCTGGATGGTAATAACAGGGGCTGGGG-AGGCACTGCCTGCAAACCAGCCACAGACCTGAGCAGATCTTCAGCTGTGTG-----------Tgcgcgtgcgcgcgcgc-acgtgcacgcgcacacgcgcATATGTACATGTGTGA--CTGCGTCAGCGTATGATGAACTTGTGTGTCTGTGTCACTGAGTCTGGGGATATGTTATTATGCACCTCCCCGGGGGGGTGGATCTCAAGCTGTGTGCCTGACCCCCTGTAACCGTGTGTAGGGTGGGTATTAACATGTGACCAGCAGCCAGGGGCAACCCAAACCAGcagccgg-ggcaaaccagtgaaaccccatctctacacaaaaaa---tttaaaattagctggtcatgatggcacgtgcctgtggt-cacagctacttgggaggctgaggtgggaggatccctcgagtctgggaggttgaggcttcagggaactgtgatcacaccac
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106519483 525 - 171882078 TCAGGTGAGGGAGCCCATGTGGCCTTTGGGGCATGAGCTCTGTAGGGCCTGTGTTGGGGGCACCTGTGCCTCTAGGAG-----GGGTGGGGCGGGGCGGGGC--------ATGATCCTGGGTGGTAATAGCAGGGGTTGGGGAAGACACTGCCAGCAAACCAGCCACAGGCCTGAACAGATCCTGAGCAGGGGG--------------------GCCTGTGT-GTGTACATGTGCACACGCGCATGTGGACATGtgtga--ctgcgtcagtgtctgatgaactcgtgtgtctgtgtcactgagtctgGGGACATGTGATTATGCACCTCCCCGAGGGAGTGCATCTCAAGCTGTGTGACCAACCCCCTGGAACCGTGTGTGGGGTGGGTA-TAACGTGT-------------------------CCAGcagccgg-ggcaacccagtgaaaccccgtgtctacaaaaaaaa-tgtttttaattagccgggcatggtggctcatgcctgtggt-cccagctacttgggaggctgaggtgggag---cccttgagcctaggaggttgaggctgcagggagctgtgattacaccac
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102488553 534 - 162156779 TCAGGTGAGGGAGCCCGTGTGGCCTTTGGGGCATGAGCTCTGTAGGGCCTGTGTTGGGGGCGCCTGTGCCTCtaggag-----gggtggggtggggcggggcatgctctgatggtcctgggtggtaatagcaggggttggggAAGACACTGCCAGCAAACCAGCCACAAGCCTGAACAGATCCTGAGCAGGGgg--------------------gcctgtgt-gtgtgcgtgtgcacacacgcatgtggatatgtgtga--ctgtgtcagtgtCTGATGAACTCGTGTGTCTGTGTCACTGAGTCTGGGGACGTGTGATTACGCACCTCCCCAAGGGAGTGCATCTCAAGCTGTGTGACCAACCCCCTGTAACCGTGTGTGGCGTGGGTA-TAATGTGT-------------------------CCAGCAGCCGG-Ggcaacccagtgaaaccccgtctctacaaaaaaacttttttaaaattagctgggcatggtggctcatgcctgtggt-cccagctacttgggaggctgaggtgggag---cccttgaacttaggaggttgaggctgcagggagctgtgattgcaccac
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7713747 553 +  58131712 TCAGGTGAGGGAGCCCATGTGGCCTTTGGGGCTTGAGCTCCATAGGGCCTGGGCTGAAGGGGGCTGTGCCTCCAGGAG---------GGGTGGGGGCAGGGCGCCCTCTGACAGTCCTGGGTGGTAATAACAGGGGCTGGGG-AGGCACTGCCTGCAAACCAGCCACAGACCTGAACAGATCCTGAGCAGGGGGGCCtgtgtgtgtgtgtgtgtgtgtgtgt-gtgcgcgcgcgcgcgcgcgcATATGTACATGTGTGA--CTGCATCAGCGTATGATGAACTTGCGTGTCTGTGTCACTGAGTCTGGGGATATGTGATTATCCACCTCCCCGGGGGAGTGCATCTCAAGCTGTGTGACTGATCCTCTGTAACCGTGTTTGGGGTGGGTATTAACATGTGA-----------------------CCAGcagccagcggcaacccagtgaaaccccatctctacacaaaaaa---tttaaaattagctgggcatggaagcatgtgcctgtggt-cacagctacttggaaggctgaggtgggaggatcccttgagcctgggaggttgaggctgcagagagccgtgattgcaccac
i chlSab2.chr26             C 0 I 3899
s calJac3.chr10             114233223 485 - 132174527 tCAGCTGAGGGAGCCCGTGTGGCCTTGGAGGCGTGAGCCCTGTAGGGCCTGTGCTGGAGGTGCCTGTGCCTCCAGGAG---------GGGGTGGGGCGGGGCGCCCTCTGATGGTCCTGGGTAGTAATAGCAAGGGCTGGGGAGGATGCTGCCTGCAAACCAGCTGCAGGCCTGAAGAGGGCCTGAGC-------------------------------------------------------ATGTGTACATGTGCGA--AGGCGTCAGCGT-TGATGAACTCACATGTCTGTGTCCCTGAGTCTGGGGACATGTGATTATGCACCTCTCAGAAAGAGTGCATCTCAGGCTGTGTGACCGA-ACCCTGTAACTGGGTGTGGGGTGGGTATTAACATGTGA-----------------------CCAGCAGCCAGgggcaacccagtgaaaccctacctctacagaaaaat---ttaaaaatcagccaggcatggtagcacctgcctgtggt-ccca------------gctgaggtgggaggatccagtgagcctggga-gttgaggctgcaaggagccatgatcacaccac
i calJac3.chr10             C 0 C 0
s canFam3.chr30               1739468 300 -  40214260 TCAGGTG-GGGGGCGCG-GCGGTCCTCGCGG-----GCCCC--AGGCCCTGTGTGCGGAG----TCTGCCTCCCGAAG---------------GGACGGAGCGCCCTCTGGTGGTGAGCAGTggcccccgcggaggccggg-----------cggc-------ccgcgggcATGGGC-------GAGCGGGCGG------------------------GTACAGGGTGCG---ACACCCGTG-AGGCCTACGTGTGTGGATCCACATCAGTGTGTAGAGAAATTGTGCATCTGAGTCACCGAGTCTGGAG--GTGTGACCGCGTACACCTCTTGGGGAGTG----------TGCACGAGTGA---------GCAGCGGGTGGGGAGG-------------------------------------CC--CAGCCGG------------------------CTGCAT--------------------------------------------------------------------------------------------------------------------------------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56889445 537 + 124595110 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=68925.000000
s hg38.chr15_KI270850v1_alt    255232 94 +    430880 agcactccagcctgggtgacagagtgagaccctgtctcaaaaaaacaaaaaaTGTGACCAGCTGCATGTCTGGCTGCTGTGTGTGTGAACCCAC
s rheMac3.chr7              116084131 89 - 170124641 tgtactccagcctgggtgacagagtgagac----tgtc-aaaaaacaaaaaaTGTGACCAGCTGCATGTCTAGCTGCTGTGTGTGTGAACCCAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106520008 93 - 171882078 tgcactccagtctcggtgacagagtgagaccctgtctt-aaaaaacaaaaaaTGTGAACAGCTGCATGTCTGGCTGCTGTGTGTGTAAACCCAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102489087 93 - 162156779 tgcactccagcctgggtgacagagtgagaccctgtctt-aaaaaacaaaaaatgtgaacAGCTGCATGTCTGGCTGCtgtgtgtgtgaacccac
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             114233708 93 - 132174527 tgcactccagcctggctgacagagtgagaccctgtctc-aaacaacaaaaaaTGTGACCAGCTACATGTCTGGCTGCTGTGTGTGTGAACTCAC
i calJac3.chr10             C 0 M 1939
s canFam3.chr30               1739768 39 -  40214260 ---------GTCTGGGTGTCTGAGTGAG---------C-AG----------------------GGGTGTCCGG--------------GGCCCTC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56889445 537 + 124595110 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=13344.000000
s hg38.chr15_KI270850v1_alt    255326 53 +    430880 ATGTGTG--TGTGTCACTAAATGAGCAGTGGTATCTGGGGAAATAAGTGGAGCAA--
s rheMac3.chr7              116084220 55 - 170124641 ATGTGTGTTTGTGTGTGTAAATGAGCAGTGGTATCTGGAAGAATAAGTGGGGCAA--
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106520101 45 - 171882078 GTGTGTGTGTGTGTGACTAAATGAGCAGTGGTATCTGG----------TGAGCAA--
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102489180 45 - 162156779 gtgtgtgtttgtgtgactaAATGAGCAGTGGTATCTGG----------TGAGCAA--
i papAnu2.chr7              C 0 C 0
s canFam3.chr30               1739807 25 -  40214260 --------------------CTGGGCGGGGG--GCTGG----------GGGGCACGG
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56889445 537 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=502550.000000
s hg38.chr15_KI270850v1_alt    255379 578 +    430880 GATCAAGGCTGTTCTGGCTGCTTAGGGCCACAGTGGGC-CCCTCTGAGACC-CCTCTGCATTCCCTTGTGAGTCCTCATGACCTCTGTTAACCAGGTAGCCCAGGAGGCAGTGCCG-CCAGCAGACATCGTTTTCTCAGTGAAGAGCCCACCGAGTGCCGGCTACCTGGTGATGGTGCTGCGTGGCATCTTGGCAGATGAGCCACCCAGCCTGGACCCCGTGCAGAGCTTCTCCCAAGAGGCAGTGGACACAGGCAGGATCCTCTACCTGCACTCCCGCCCTGAGGC--------ATGCCTTCTCGCTGGATGTGGCCTC-GGCCTGGGTGCTCCCCTTGAGGACGTCA-CGTGGAGCTGGAGGTGCTGCCTGCTGTCATCCCCACTGGGGGCACAAAACTTCAGCAGTAGAGGGGGCACAGTCGCAGCTGCACCCTGGCCCCTCCACTGCTCCGCGTTGCCAGGTCCTGCTTCCCCACTCTCCCGGGCCTTGGCCTGCAGGTGCTGGAGCCACCCCGGCATGGGGCCCTGCAGAAGGAGGATGGGCCTCAAGCCAGGACCCTCAGCACCTTCTGCTGGAGAGAGGTACGG
s rheMac3.chr7              116084275 548 - 170124641 GATCAAGTCTGTTCTGGCTGCTTAGA-------------CCCTCAGAGACTGCCTCTGTGGCCCCCTGTGAGTCCTCATGACCTCTGTTAACCAGGCAGCCCAGGAGGCAGTGCCG-CCGGCAGACATCATATTCTCAGTGAAGAGTCCACCGAGTGCCAGCTGCGTGGTGATGGTGTCTCGTGGCATCTTGGCAGATGAGCCACCCAGCCTGGACCCCGTGCAGAGCTTCTCCCAGGAGGCAGTGGATGTGGGCAGGGTCCTGTACCTGCACTCCCGCCCTGAGGCCTGGAGCGATGCCTTCTCACTGGATGTGCCCTTGGGCCTGGGTGCTCCCCTCAAGGGTGTCCGCGTGGAGCTAGAGGTGCTGCCTGCTGCCAT-CCCACTGGAGATGCAAAACTTCAGTGACCCC----------------------------CCCTCCACTGCTCCGTGTCACCGGGCCCTACTTCCCCAGTCTCCCAGGCCTCAGCCTGCAGGTGCTGGAGCCACCCTGGCATGGGGCCCTGCAGAAGGAGGACGGACCTCAAGCCAGGACCCTCAGCGCCTTCTCCTGGAGAGAGGTACAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106520146 581 - 171882078 GATCAAGCCTGTTCTGGCTGCCTAGGGGCACAGTGGGC-CCCTCTGAGACC-CATCTGTGTTCCCTTGTTGGTCCTCATGACCTCTGTTAACCaggcagcccaggaggcagcccag-aaggcagACATCGTTTTCTCAGTGAAGAGCCCACTGAGTGCCAGCTACCTGGTGATGGTTTCGCCTGGCGCCTTGGCAGGTGAGCCACCCAGCCTGGACCCCATGCAGAGCTTCTCTCAAGAGGCGGTGGACGCAGGCAGGATCCTGTACCTGCACTTCTGCCCTGAGGCCTGGAGCGATGCCTTCTTGCTGGTTGTGGCCTC-AGCCTGGGTGCTCCCCTTGAGGACGTAT-CGTAGAGCTGGAGGTGCTGCCCACTGTCATCCCCACCGGGAGTGCAAAACTTCAGCGTCCCCGAGG-----GTGGCAGCCACACCTTGGTCCCTCCACTGCTCTGTGTCACCGGGCCCTACTTCCCCACTCTCCCGGGCCTTGGCCTGCAGGTTCTGGAGCCATCCTGGCATGGGGCCCTGCAGAAGGAAGATGGGCCTCATGCCAAGACCCTCAGCGCCTTCTGCTGGAGAGAGGTATGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102489225 577 - 162156779 GATCAAGCCTGTTCTGGCTGCCTAGGGCCACAGTGGG--CCCTCTGAGACC-CATCTGTGTTCCCTTGTTGGTCCTCATGACCTCTGTTAACCAGGCTGCCCAGGAGGCAGCCCAGAAAGGCAGACATCATTTTCTCAGTGAAGAGCCCACTGAGTGCCAGCTACCTGGTGATGGTTTCACCTGGCGCCT--GCAGATGAGCCACCCAGCCT-GACCCCATGCAGAGCTTCTTCCA-GAGGCGGTGGACGCAGACAGGATCCTGTACCTGCACTCCTGCCCTGAGGCCTGGAGCGATGCCTTCTTGCTGGTTGTGGCCTC-AGCCTGGGTGCTCCCCTCGAGGATGTAT-CATAGAGCTGGAGGTGCTGCCCACTGTCATCCCCACCGGGAGTGCAAAACTTCAGCGTCCCTGAGG-----GTGGCAGCCACACCTTGGTCCCTCCACTGCTCTGCGTCACCGGGCCCTACTTCCCCACTCTCCTGGGCCTTGGCCTGCAGGTTCTGGAGCCATCCTGGCATGGGGCCCTGCAGAAGGAAGATGGGCCTCATGCCAAGACCCTCAGCGCCTTCTGCTGGAGAGAGGTATGG
i papAnu2.chr7              C 0 C 0
s mm10.chr9                  56889982 564 + 124595110 GACCGAGCCTGTTCTGCCACCTGAGGTCCACAA------CAGCCTGTGACC-CC-------------GTTTGTCCCCATCGTCTCTGTTGACTAGGTGGTCCAGGAGGCAGTGCTG-CCTGCCGACATCATGTTCTCGTTGAGAAGCCCCCCGAACGCCGGCTACCTGGTGATGGTGTCCCACGGCGCTTCAGCAGAGGAGCCGCCCAGCCTGGACCCTGTGCAGAGCTTCTCCCAGGAGGCAGTGAATTCAGGCCGGGTTCTCTACCTGCACTCTCGCCCTGGAGCCTGGAGTGATTCCTTCTCCCTGGATGTGGCCTCGGGCCTGGGTGATCCTCTTGAAGGCATCTCTGTGGAGCTGGAGGTGCTGCCCACAGTCAT-CCCCCTGGATGTTCAAAACTTCAGCGTTCCCGAGG-----GCGGCACCCGGACGCTGGCCCCTCCTCTGGTCCAGATCACTGGGCCTTACTTCCCCACGCTGCCAGGCCTTGTCCTGCAGGTGCTAGAGCCACCGCAGCACGGGGCCCTGCAGAAGGAGGATCATTCTCAAGATGGGAGCCTCAGCACCTTCTCCTGGAGAGAGGTACCG
i mm10.chr9                 I 537 I 223
s canFam3.chr30               1739832 552 -  40214260 CGCTGAGCCTGCTCTGGCCGCTTGGGGGC-CGGCGGCCTCCCTCCATGACC-------------------------------CTGTGTCACGCAGGCAGCGCAGGAGGCAGTGCCG-CCCGCCCAAATTGTGTTCTCGGTGAAGACCCCGCCGCGGGCCGGCTACCTGGTGATGCTGTCCCGCGGCGCCTCCGTGGCCGGGCCGCCCAGCTGGGACCCCGTGCAGAGCTTCTCCCAGGAGGCGGTGGACGCCGGCAGGGTCCTGTACCTCCACTCCCGCCCCGAGGCCTGGAGTGACTCCTTCTCCCTAGACGTGGGCTCAGGCCTGGGTGCGCCCCTCGAGGGCGTCCGCGTGGAGCTGGAGGTGCTGCCCGCCACCAT-CCCACTGGAGGCACAGAACTTCAGCGTCCCCGAGG-----GCGGCAGCCGCGTGCTGGCCCCCCCGCTGCTCCAGGTCGCCGGGCCCTACTTCCCTGCACTGCCCGGCCTCGAACTGCGGGTCCTCGAGCAGCCCCTGCACGGGGCCCTGCGGAGAGAGGAGGCCCCTCAAGCGGGGACCCTCAGCGCTTTCTCCTGGAAAGAGGTACTG
i canFam3.chr30             C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=37478.000000
s hg38.chr15_KI270850v1_alt    255957 66 +    430880 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCCCCGGGGACTC
s rheMac3.chr7              116084823 66 - 170124641 CTGTGAGAGAGGCCCAGGGACTGCAGCCCAGCTCTGGGGGCAGAATGGAGGGAGCCCTGGGGACTC
i rheMac3.chr7              C 0 I 51
s macFas5.chr7              106520727 66 - 171882078 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCTCCAGGGACTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102489802 66 - 162156779 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCTCCAGGGACTC
i papAnu2.chr7              C 0 C 0
s canFam3.chr30               1740384 41 -  40214260 -----------CTCTCGGGACT---------CGCTGGGGGCCGGGGGGCAG-----CTGGGGGCTC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=894.000000
s hg38.chr15_KI270850v1_alt    256023 16 +    430880 -CCAGTCCAGGGGT---TAT
s macFas5.chr7              106520793 19 - 171882078 -CCAGTCCAGGGGGTTATAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102489868 19 - 162156779 -CCAGTCgggggggTTATAC
i papAnu2.chr7              C 0 C 0
s canFam3.chr30               1740425 17 -  40214260 TACGGCTGGGGGCGTCC---
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e chlSab2.chr26               7714300 3899 +  58131712 I
e rheMac3.chr7              116084889 51 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=27213.000000
s hg38.chr15_KI270850v1_alt    256039 46 +    430880 ACAGAGAGGAGACAGGGAGTCACATTTCAGAAAGACCTATgcttta
s macFas5.chr7              106520812 46 - 171882078 ACAGAGAGGAGACAGGGAGTCACATTTCAGAAGCACCTATGCTTTc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102489887 46 - 162156779 ACAGAGAGGAGACAGGGAGTCACATTTCAGAAGCACCTATGCTTTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7718199 46 +  58131712 ACAGAGAGGAGATGGGGAGTCACATTTCAGAAGCACCTgtgcttta
i chlSab2.chr26             I 3899 I 7
s canFam3.chr30               1740442 46 -  40214260 ACCCAGAGGAAGCAGGGAGGTCGCGGTCGGGGAGGCCTCTGCTCTG
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e rheMac3.chr7              116084889 51 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=44014.000000
s hg38.chr15_KI270850v1_alt    256085 228 +    430880 gatgctgtatctcgggctgggcgctgtggctcatgcctgtaattccaggactttgggaggccgaggtgggcagatcaggaggtcaggagatcaagaccatcctggctaacacggtgaaaccctgtttctactaaaaatacaaaaaattagccgggtgtggtggcccgcacctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaatctgggaggca
s macFas5.chr7              106520858 227 - 171882078 actactgtagctcaggccaggctcggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcatgaggtcaggagatcaagaccatcctggctatcatgatgaaaccctgtctctactaaaaatacaaaaaatta-cagggtgtggtggcacgtgcctgtagtcccagctactcaggaggctaaggcaggagaatcgcttgaacctgggagaca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102489933 227 - 162156779 AATACTGTATctcaggccaggcttggtggctgacgcctgtaatcccagcgctttgggtggctgaggtgggcggatcatgaggtcaggagatcaagaccatcctggctatcatgatgaaaccgtgtctctactaaaaatacaaaaaatta-cagggtgtggtggcacgcgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggagaca
i papAnu2.chr7              C 0 C 0
s canFam3.chr30               1740488  86 -  40214260 ------------------------GGTGCCTGCTGCCGTTCCTTCCC---CTCCGGGCAGTC-----------------------GGAGGACAGCCCCAT-------------------TCCCGTTCCT----------------------------------------CCTGCGGCC---------------------------------CTTCAGCCTGGGAGGAG
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e chlSab2.chr26               7718245   7 +  58131712 I
e rheMac3.chr7              116084889  51 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=3607.000000
s hg38.chr15_KI270850v1_alt    256313 5 +    430880 gaggt
s macFas5.chr7              106521085 5 - 171882078 gaggt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102490160 5 - 162156779 gaggt
i papAnu2.chr7              C 0 C 0
s mm10.chr9                  56890769 5 + 124595110 gtggt
i mm10.chr9                 I 223 C 0
s canFam3.chr30               1740574 5 -  40214260 GGGGT
i canFam3.chr30             C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e chlSab2.chr26               7718245 7 +  58131712 I
e rheMac3.chr7              116084889 51 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140 0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=13269.000000
s hg38.chr15_KI270850v1_alt    256318 78 +    430880 tgcagtgagccgagatcacaccactgcactccagcctgggcaa-cagagcgagagactctgtctc-aaaataaaataaaa
s macFas5.chr7              106521090 75 - 171882078 tgcagtgagccgaaatcgcgccactatactccagcctgggcaa-cagagcgaga----ctgtctcaaaaataaaataaaa
i macFas5.chr7              C 0 I 14
s papAnu2.chr7              102490165 77 - 162156779 tgcagtgagccaaaatcgcgccactatactccagcctgggcaa-cagagcgaga--ctctgtctcaaaaataaaataaaa
i papAnu2.chr7              C 0 I 14
s mm10.chr9                  56890774 43 + 124595110 tgcagggaattgaactcagg-------acctctggaagagcagtcagtgc------------------------------
i mm10.chr9                 C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e canFam3.chr30               1740579  0 -  40214260 C
e chlSab2.chr26               7718245  7 +  58131712 I
e rheMac3.chr7              116084889 51 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=36219.000000
s hg38.chr15_KI270850v1_alt    256396 45 +    430880 tatcccctttcttcctcacaactcctctgggaaccagaacttatg
s rheMac3.chr7              116084940 45 - 170124641 tatctcctttcttcctcacagctcctctgggagccagaacttatg
i rheMac3.chr7              I 51 C 0
s macFas5.chr7              106521179 45 - 171882078 tatcttctttcttccccacaactcttctgggagccagaacttatg
i macFas5.chr7              I 14 C 0
s papAnu2.chr7              102490256 45 - 162156779 tATCTCCTTTCTTCCCCACAACTCTTCTGGGAGCCAGAACTTATG
i papAnu2.chr7              I 14 C 0
s chlSab2.chr26               7718252 45 +  58131712 tatctcctttcttcctcacagctcctctgggagccagaacttatg
i chlSab2.chr26             I 7 C 0
s mm10.chr9                  56890817 26 + 124595110 ------------tcttaaccact-------gagccatctctccaC
i mm10.chr9                 C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e canFam3.chr30               1740579  0 -  40214260 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=415264.000000
s hg38.chr15_KI270850v1_alt    256441 307 +    430880 gtccccattttccaccaatggaagctgaggccctaaaagggtcagtctcttcctgcacccaaaggcaGAACATGAAGGGTACT------------------------------------GCTGGGGCCTGACTGCCAGCCCTGGGCCTGCCCCTAGGTGGAAGAGCATCTGATCCAGTACCTGCACGATGGGAGCAAGACACT----GACGGTTTTGTCCTGATGGCTAATGCCTCTGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAA-CCCCCGACCTCA-TACAAACTCAGGCCTGCAGGTGAGCATATTCCTGG
s rheMac3.chr7              116084985 310 - 170124641 gtccccattttccaccaatggaagctgaagccctaaaagagtcagCCTCCTCCTGCACCCAAAGGCAGGACATGAAGGGTGCT------------------------------------GCTGGGGCCTGACT---AGCCCTGGGCCTGCCCGTAGGTGGAAGAGCAGCTGATCCGCTACGTGCACGACAGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGGCTAACGCCTCCGAGATGGGCTGCCAGAGCCATCCTGTGGTCTTCACTGTCACCATCCTGCCTGTCAATGACCAACCCCCCGTCCTCACTACAAACACAGGCCTGCAGGTGAGAGTATTCCCGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106521224 311 - 171882078 atccccgttttccaccaatggaagctgaagccctgaa--agTCAGTCTCCTCCTGCACCCAAAGGCAGGGCATGAAGGGTGCT------------------------------------GCTGGGTCCTGACTGCCAGCCCTGGGCCTGCCCCTCGGTGGAAGAGCAGCTGATCTGCTATGTGCACGAGGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGGCTAATGTCTCGGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAACCCCCCGACCTCACCACAAACTCAGGCCTGCAGGTGAGCGTATTCCTGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102490301 310 - 162156779 ATCCCCGTTTTCCACCAATGGAAGCTGAAGCCCTGAA--AGTCAGTCTCCTCCTGCACCCAAAGGCAGGGCATGAAGGGTGCT------------------------------------GCTGGGTCCTGACTGCCAGCCCTGGGCCTGCCCCTCCGTGGAAGAGCAGCTGATCTGCTATGTGCACGAGGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGGCTAATGTCTCGGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAACCCCCCGA-CTCACCACAAACTCAGGCCTGCAGGTGAGCGTATTCCTGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7718297 310 +  58131712 gtccccattttccaccaatggaagctgaagccctaaaagagtcagtCTCCTCCTGCACCCAAAGGCAGGACATGAAGGGTGCT------------------------------------GCTGGGGCCTGACT---AGCCCTGGGCCTGCCCATAGGTGGAAGAGCAGCTGATCCGCTACGTGCACGACGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGACTGACACCTCCGAGATGGGCTGCCAGAGCCATACTGTGGCCTTCACTGTCACCGTCCTGCGTGTCAATGACCAACCCCCCGTCCTCACTACAAACACAGGCCTGCAGGTGAGAGTATTCCTGG
i chlSab2.chr26             C 0 C 0
s mm10.chr9                  56890843 339 + 124595110 ATACACACTTCTTACCTGTGGAAAT--GTGTTCTAAAGGGATCTGTC---TCCTGTACCTAACAATGGGACGTTAAGGGTGCTGGTCCCAAG-----ATCCCTGTTGAGTCTTGGGCTAGCTGAAGCCTGACAACCAATCCTGGGTCTCCTCATAGGTGGAAGAGCAGCTGATCCGCTACGTGCATGATGGAAGTGAGACACAGACAGACGCCTTTGTTCTGCTAGCTAATGCCTCAGAGATGGACCGCCAGAGCCAGCCCGTGGCCTTCACGATCACCATCCTTCCTGTTAATGACCAACCCCCTGTTCTCACCACAAACACAGGCCTGCAAGTGAGTTCACTCCTGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1740579 339 -  40214260 GTCCCCG-TCTCCACCTGCGGGAATGGAAGCGCGGAGGGAGCCCGTC-CCTCCCACACCCAGAGGCAGAGCACGAGGGGTGCCGGGGTGGAGCCCGCGCCGCCCTCAGGCCT-------GCCAGGGCCTGGCCTTCAGCCTCGGGCCTGCCCACAGGTAGAACAGCAGCAGATCCGCTATGTGCACGACGGGAGTGAGACGCTGACAGACAGCTTCACCCTAGTGGCTAACGCCTCCGAGCTGGACCGCCAGAGCCACCCTGTGGCCTTCACCATCACCGTCCTGCCCGTCAATGACCAACCGCCCATCCTCACCGCAAACACAGGCCTAACGGTGAGAGCA-GCCTGG
i canFam3.chr30             C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=570334.000000
s hg38.chr15_KI270850v1_alt    256748 449 +    430880 GACCACCCCCCATGTCTGCTTTGAGAAAGAGGCCAATGTCCCCTACTTCCCGGCACAGA--Tctcccccactc------tgagcctcagtttcctcctctgcaaaatgaggacactactgtgtgcctcacgcagttgttggaaggagagatgtgagattgtgcTG-AAATAGAACACAGGTGGGAGGTTTTGTTATTGGACATTTGCAAGTACGGTAGGCAGACTTCTGAGCAGCCATGGGTGGCTCTG-------CTGTTC------------------------CTTCTCCTGTGGCTTAGGACCAGAACACCTGAAAGAATCACTTACAAGCCCTTA-AGGGCTGGCGTCAGGGTGGGA-CCGTTAAGCTTCCCACCTTCACCC-CAGCAAGTGGAGGCCTCAGCTTGGCTTCCCAAACTCCTGCCCCTTGT----CCACAgcagagcagggcccccatttggcaaaggtggaagttgaggcccagagatggg
s rheMac3.chr7              116085295 446 - 170124641 CACCATCCCCCATGTCTGCTTCGAGAAAGAGGCCAGCGTCCCCTACTTCCCAGCACAGA--GCTCCCcctgtc------tgagcctcagtttcctcctctgcaaaatggggacgctgccgcatgcctcacggggttgttggaaggagagttgtgagattgtgcTG-AAACAGAACACAGGTGGGAGGTTTTGTTATTGGACGCTTGCAGGTAAGTTAGGCAGACTTCTGAGCGGCCATGGGTGGCTCTG-------CTGTTC------------------------CTTCTCCTGTGGCTCAGGACCAGAACTCCTGACAGAATCACTTACAAGCCCGTA-AGGGCAGGTGTCAGGGCAGGAGCCACTAAGCTTCCCACCTTCACCC-CAGCAAGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTGCCCCTTGT---GCCACAGCAGAGCAGGGCCCCCATTTGGCA-----GGAACCCAGGGCCCAGACATGGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106521535 448 - 171882078 GACCACCCCCCATGTCTGCTTTGAGAAAGAGGCCAGCATCCCCTACTTCCTACCGCAGA--Tctcccccattc------tgagcctcagtatcctcctctgcaaaatggggccactaccgtgtgcctcacgcagttgttggagggagagatgtgagattgtgcTG-AAATAGAACACCGGTGGGAGGTTTTGTTACTGGACGTTTGCA-ATACGGTAGGCGGACTTCTGAGCAGCCACGGGTGGCTCTG-------CTGTTC------------------------TTTCTCCTGTGGCTTAGGACCAGAACACCTGACAGAATCACTTACAAGCCCTTA-AGGGCAGACGTCAGGGTGGGA-CCATTAAGCTTCCCACCTTCACCC-CAGCACGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTG-CCCTTGT---GCCACAGCAGAGCAGGGcccccatttggcagaggtggaagttgaggcccagacatggg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102490611 438 - 162156779 GACCACCCCCCATGTCTGCTTTGAGAAAGACGCCAGCGTCCCCTACTTCCTACCGCAGA--TCTCCCCCATtc------tgagcctcagtatcctcctctgcaaaatggggccACTACCGTGTGCCTCATGCA---GTTGGAAGGAGAGATGTGAGATTGTGCTG-AAATAGAACACTGGTGGGAGGTTTTGTTACTGGACGTTTGCA-ATACTGTAGGCGGACTTCTGAGCAGCCACGGGTGGCTCTG-------CTGTTC------------------------CTTTTCCTGTGGCTTAGGACCAGAACACCTGACAGAAT-------AAGCCCTTA-AGGGCAGACGTCAGGGTGGGA-CCATTAAGCTTCCCACCTTCACCC-CAGCACGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTG-CCCTTGT---GCCACAGCAGAGCAGGGCCCCCATTTGGCAGAGGTGGAAGTTGAGGCCCAGACATGGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7718607 445 +  58131712 CACCATCCCCCATGTCTGCTTCAAGAAAGAGGCCAGCATCCCCTACTTCCCAGCACAGA--Gctccccctgtc------tgagcctcagtttcctcctatgcaaaatggggacgctgccgcatgcctcatggggttgttggaaggagagttgtgagattgtgctg-aaatggaacacaggtgggaggttttgtta-tGGACACTTGCAAGTAAGGTAGGCAGACTTCTGAGCAGCCACAGGTGGCTCTG-------CTGTTC------------------------CTTCTCCTGTGGCTCAGGACCAGAACTCCCGACAGAATCACTTACAAGCCTGTA-AGGGCAGGTGTCAGGGCAGGAGCCAATAAGCTTCCCACCTTCACCC-CAGCAAGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTGCCCCTTGT---GCCACAGCAGAGCAGGGCCCCCGTTTGGCA-----GGAACCCAGGGCCCAGACATGGG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114235740 451 - 132174527 GACCA-CCCCCAT-TCTGCTTCAAGAAAGAGGCCAGCGTCCCCTCCCTcctggtacagagctctccccctctc------tgagcctcagtttcctcctctgc-aaatgggggcgctgctgcacgcctcacgcggtggctggaaggagagatgtgagattgtgctg-aaacagagcacagGCGGGAGGTTTTGCTGCTGGACGCTCGCAGGTAAGGCAGGCAGACTTCTGAGCGGCCACGCGTGGCTCTG-------CAGTTT------------------------CTTCTCCTGTGGCTCAGGACCAGAACACCTGCCAGAATCACTTACAAGCCCTTACAAGGCAGGCGTCAGGACTGAAGCCATTAAGCTTCCCACCTTCACCC-CAGCAAGTGAAGGACACGGCCTGGCTCCCCAAACTCCTGCCCCTTGT---GCCACAGCAGAGCAGGGcccccattcggcaggggtggaagtggaggcccagacatggg
i calJac3.chr10             M 1939 C 0
s mm10.chr9                  56891182 348 + 124595110 -ACCT-ATCCCATCTCTGGTCCCAGAAAGAGACTAGagtccct------------------tctctct--------------ggctcagtgtcatcctctgtgaaatgggttcactaccacaaac------------ttggaaggagagatgtgaTACAGTGCTGAAAACAAAACGCAGTTGTGAGGTTTTGTTACTGGGCAGTCTTGGTTTAGAAAGACCATCCT-----TGACCTTGCCTGTCCTTGGACCCACCTGTTCACAGAA--------------AGGTTTTCCCTCATGTCTCAGGCCCAAAATACCTAAAGAAATGTATTATAAGTCCTGT-ATTGTGGGCTGCAGGTTGGGA-GCTCGAGGGT------------CA-CAGCAAATAAAGATCACAACGAAGCTTC--------------------------------------------------------------------CCTATATATAGG
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1740918 454 -  40214260 GATCACCTCCCACCTCC-CGCCCAAAGAGAGGCC----------------CAGCACAGA--GCTCCCCGCCCCCACCCATGAGCCC--GTCGCTTTCTCT---AAGTGTGGACCGTGCCACATGCCTC---TAGGTGGTGG-GGAAGAGCTATGGCACTG----A-AAGTAGGGCACAGGTGTGAGACTTGGTTGTTGAACACTTAGAAGTGCGGCAGGCAGTCTCGCGAATGGCCATCCTTGGCCCTG-------CCCTTCCCTGGACTCACCCTCAGCTGCAGGCGTTTTCTGTGGCTCCGGACCAGACCTCCTGAAGAAAGTTCTTTCAGGCCCTAA-AGGGCGGAT-CCAGGTGGAGCGTGGTTAAGCTCCCCGCTTCCACCCACAGCAAGGGAGGGCCACAGCTTGGCTTCCCGAGCCCCTGCCCCTCACATCGCCCCAGAATGGTGGCGccgtcactcagcagaagccaaagctgaggcccagcccggtc
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=146792.000000
s hg38.chr15_KI270850v1_alt    257197 127 +    430880 atggaacttctccatgattgcaaaagtagttctggtggaacagaaaGGGCATGGCTTTACTAAGCCCACGTGGCAGGGCTTTGAACCCCAGCTTCTGGGGCGCGTCCTCCCCAGTCAGCAGAAGCCA
s rheMac3.chr7              116085741 127 - 170124641 GTGGAACTTCTCCATGCTTGTGAAAGTAGTTCTGGTAGAACAGAAAGGGCATGGCTTCACTAAGCCCACATGGCAGGGCTTTGAATGCCGGCTTCTGGGGTGCATCCTCTGCGGTCAGCGAGAGTCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106521983 127 - 171882078 atgggacttctccatggttgcagaagtagttctggtggaacagaaaGGGCATGGCTTTACTAAGCCCACATGGCAGGGCTTTGAACGCCAGCTTCTGGGGTGCGTCCTCCCCAGTCAGCAGGAGTCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102491049 127 - 162156779 ATGGGACTTCTCCATGGTTGCAGAAGTAGTTCGGGTGGAACAGAAAGGGCATGGCTTTACTAAGCCCGTATGGCAGGGCTTTGAACGCCAGCTTCTGGGGTGCGTCCTCCCCAGTCAGCAGGAGTCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7719052 127 +  58131712 GTGGAACTTCTCCATGCTTGTGAAAGTAGTTCTGGTAGAACAGAAAGGGCATGGCTTCACTAAGCCCACATGGCAGGGCTTTGAATGCCGGCTTCTGGGGTGCGTCCTCCTGGGTCAGCAAGAGTCA
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114236191 123 - 132174527 ctggaacctct-catggttgcacaggtagttCTGCTGGAACAGAAAGGGCGTGCGCTTACTAAGCCCACGTGGCAGGGCTTTGAACGCCAGCTTCCAGGGGGCATCCTCCCTGGTCAG---GAGCCA
i calJac3.chr10             C 0 C 0
s canFam3.chr30               1741372  68 -  40214260 acagcatttctccacggtcacagaagtagttaCGGGGGAACAGAAAGGGCACGGCGTGGCCAAGATCA-----------------------------------------------------------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56891530   0 + 124595110 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=44437.000000
s hg38.chr15_KI270850v1_alt    257324 36 +    430880 CTGAAGGTTCCGCAAGAGGGCTGACTTGGGCTGTCT
s rheMac3.chr7              116085868 36 - 170124641 CTGAAGGTTCCACAGGAGAGTTGACTTGGGCTGTCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106522110 36 - 171882078 CTGAAGGTTCCACAAGAGGGCTGACTTGGGCTGTCT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102491176 36 - 162156779 CTGAAGGTTCCACAAGAGGGCTGACTTGGGCTGTCT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7719179 36 +  58131712 CTGAAGGTTCCACAGGAGAGCTGACTTGGGCTGTCT
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114236314 35 - 132174527 CTGAAGTTTCCACA-GAGGGCTGACTTGGTCTGTCT
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56891530 29 + 124595110 CTGAGGGT----CTAGATAACTAA---GGGATGCCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1741440 24 -  40214260 ----------CACGAGATGGTGGAC--GGGCAGGGC
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=129861.000000
s hg38.chr15_KI270850v1_alt    257360 106 +    430880 CTGACATGGGGCACC--GGGGGGCTTTGGTGGTCTAGGATGTGCCTGTAGGGGGTGGCCTCATGGTGCGGACGCCACAGAA------GAGTGGGACACAGCAC--CCTGGAACCAC
s rheMac3.chr7              116085904 108 - 170124641 TTGACATGGGGCGCTGAGGAGGGCTTTGGTGGTCTAGGATGTGCCCATAGGGGGTGGCCTCATGGTGCGGAGGTCACAGGA------GAGTGGAACACAGTGC--TCTGGAACCAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106522146 106 - 171882078 CTGACATGGGGCACT--GGGGGGCTTTGGTGGTCTAGGATGTGCCTGTAGGGGGTGGCCTCATGATGCGGAGGCCACAGAA------GAGTGGGACACAGCGT--CGTGGAACCAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102491212 108 - 162156779 CTGACATGGGGCACCGCAGGGGGCTTTGGTGGTCTAGGATGTGCCTGTAGGGGGTGGCCTCGTGGTGTGGAGGCCACAGAA------GAGTGGGACACAGCGT--CGTGGAACCAC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7719215 108 +  58131712 CTGACATGGGGCGCTGAGTGGGGCTTTGGTGGTCTAGGATGTGCCCATAGGGGGTGGCCTCATGGTGCGGAGGTCACAGGA------GAGCTTAACACAGTGC--TCTGGAACCAC
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114236349 111 - 132174527 GTGATGT-GGGCACTGGGGGGGACTTTGGTGGTCTAGGATGTGCCCGTAGAGGGCGGCCTGGTGGTGGGGAGGCCAATGAAGAGT--GAGTGGGACACAGCGC--TCCGGAACCAC
i calJac3.chr10             C 0 C 0
s canFam3.chr30               1741464 111 -  40214260 CTGAT---GGACACC--GGACGCCTTTGATGGCAGAGGCTGTGGCTGTGGGGAGTGGTCCAGGGGTGGGGCGGCCGCAGAGCAGCGGGGGTGCGGCTCGGGGCTGCCCGGAACCAC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56891559   0 + 124595110 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=2452551.000000
s hg38.chr15_KI270850v1_alt    257466 1664 +    430880 AGGCTGGGATGGCTGTGTGGCAGTGCGGCCACCAGGTGGTGCCATCTACCCGTGTTTG-TTCCGGGAGCCCAGTGATGGGGCC------CTGCCTCCCACAGTATGGCCCCTCTTGCCAAGGCTCGGCCTGAGGGCTCCCTGCGGCCAGGGGAGGAAGCCCAGGAATGCCAGAGGG--CTGTTTTCTGGGCATGTGAGTCCCACTGCAGCACTGCCCACAAGTAATTGACCCAGC--AAGAGTGGTAC-CAGGACCTCAGGAACGGGTGCCTGTTCTGCTTGCTAGTGGGAGGCCTGAAAAGGGGCCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAAGCACCTGGGCCCATCCCA-GCACTGCTTCTGTGCTGCAGGACAGTGCCAACCATCAGGCT-TCAGCTCTCTGCGCCTCCCACCCCTCCCTTAGCTGGAAGGAGTGCTCGTTTCTAAA------------------ATCACTGTTCCCA----CCTGTGCCCAGCCC-CTGCCA---GGCACA---CATGGAGGGTCTGAAAGGAGACTGCTGCCCCACCAGTGAGCTAGATTAAGGAGCACTGTTGGTCAGCGCTGGGGGTTTCT-GGGGGTGAGAACTTGGTGACGGTAAGAGCTAGGGCCTTCCTGGGTTGG-GTACACAAGCTGGTCTTGAGGGACACACAGGACTAGGACAGATGAAGAGCAGGGATGCTGGGCCTGGAGGGT------------GGCCTTCCCTGGGGTGACA-GGGAAGGTGAATGCA-GGGAGG-CCATTTGTGCAGGGGAG-CCACAGCAGCGCCAGCCTTGATGCCACCTGAGGGCCTGAGCCTCAGTGGGGTTGGAGCCCTGGTGGCAGCCCAGGGCCGGGGAGGAAGGGGTGGGTAAGTGTGGCA------GGGCAGAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGGGCCACCGTGCCCATCCCTACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTGTACACCATTAAGCAGCCCAGCAATGGGTGGGTAGTGCAGTGGGCGGTGCCGGGCACTGAGGTGCGCAGCTTCAAGCAGACCCAGCTGGATGGTGGGCTCGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGGCCGAGCCCCAGGTTTCTGCTGCCCACGGGGGCACCCTGAGGTG-GGGAGCCAGTTCAGGCCAGCTGGACCCA--ACAC------CCTTGTCCCCAGGGGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAACATACTTCCTCCAGACACTTAGCTTCTGAGTGACGGCCCAGAAGCAAGTGCTTCACTCGCTGGAGGGCAGCCGGACACTGACTGCCCA----GGTGGGTGTGCTGATTGTGGGCGTTCCTGG--GTGCGGG-GGGCTGGGGCAGAGCTGAGGGTGGCATGCCAGGGTCACACTGCCTCTCTGCAGCCACA-GGCCTCGGCCTGGATC-----ACAAAGGCTGATGGCCCCTTTTGCCTCTGGCAGAGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAG--------CAGGCACCGACCCCCAGCTCCTGCTCT-ACCATGTGGTGCGGGGCCTCCAGCTAGGCCGGCTCTTCCACGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGGCAGAGGTAAGGGCCCCACTCTGCAGCCACCACTCAGATGCG--CCCAGCCTC
s rheMac3.chr7              116086012 1685 - 170124641 AGGCCAGGACGGCTGTGTGGCAGCGCGGCCACCAGGTGGTGCCATC-----GTTTTTG-CTCCGGGAGCCCTGCAATGGGGCC------CTGCTCCCCACATTATGGCCCTTCCTGCCAAGGCTCAGCCTGAGGGCTCCCTGGGGCCGGGGCAGGGAGCCCAGGAATGCCAGAAGGCTCTGTTTCCCGGGCATGTGACTCCCACTGCAACTCTGCCTGCAAGTAATTGACCCGCC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGCGCTGCCTGCAAGTGGGAGACCTGAAAAAGGGTCCCCTGCACCC----------------------------------AACATGAGGAGGGCCCGTAACTGCTCTGGAAGCACCTGGGCCCATCGCG-GCGCTGATTCTGTGCTGCAGAACA-TACCACCCATCAGCCC-CCCACTCTCCGTGCCACCTACCCCTCCCTCAGCCGGAGGGAGGGCCCGTTTCTAAA------------------ATCACCATTCCCA----CCTGTGCCCAGCCC-TGGCCA---GGCACA---CACGGAGGCTCTGAAAGGAGACCCCTGCCCCACCAGTGAGACAGATTAAGGAGCACTGTTGGTCAGCGTTGGGGATTTCT-GGGGGTGAGAACTTGGTGAGGGTAAGAACTGGGGCCTTCCTGGGTAGG-GGACACAAGCTGGCCTTGAGGGACACACAGGACTAGGGCAGATGGAGAGCAAGGAGGCTGGGCCTGGAGGGTGACCTTCCCTGGGGCCTTCCCTGGGGTGACA-GGGAAGGTGAATGTG-GGGAGGGCCCTTTGTGCAGGGGAG-CCAGAGCAGTGCCAGCCTCGATGCCACCTGAGGGCCTGAGCCGCAGCAGAGTTGGAACCCTGGTGGCAGCCCAGAGCCGGGGAGGAAGGGGTGGGTGAGCAGGGCA------AGGCAGAACCTTCACAGGCCTGTGTTCCCAGATGTGGGAGGGGGCCACTGCGCCCATCCCTGCGGAGGCCCTAAGGAGCATGGACAGTTACTCTGGGCCCCTGAGCATCTGGTTTACACCACTGAGCAGCCCAGCAAAGGGCGGGTAGTGCTGTGGGCAGCGCCGGGCACCAAGGTGCACAGCTTCACGCAGGCCCAGCTGGACGGCAGGCTCGTGCTGTTCTCACACAGTGGTGGGTGCTGAGGGCTGGGCCCTGGGTTCCTGCTGCTTGCAGGGGTGCCCTGAGATG-AGGAGCCAGCTCAGGCCAGCCGGACCCA--ATG--------ACTGTCCTCAGGAGCCCTGGATGGAGGCATCCACTTCAGCTTCTCTGACGACAAGCACACTTCCTCTGGACGCTT--CTTCCGAGTGATGGCCCAGAAGCAAGTGCTCCTCTCGCTAGAGGGCAGCTGGACACTGACTGTCTGCCCAGGTGGATGTGCTGATTGTGGGCATTCCGGGGTGTGCCAG-GAGCTGGGGCAGAGCTGAGGGTGGTGCGCCAGGGTCACGCTGCCTCTCTGCAGACACA-GGCCTGGGCCTGGATC-----TCAAAGGGTGATGGCCCCTTTTGCATCTGGAAGGGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGCACAGGCACTGACCCCCAGCTCCTGCTCT-ACAGTGTGGTCCTGGGCCCCCAGCTAGGCCAGCTGTTCCATGCCTAGCAGGACAGCGCAGGGGAGGCACTGGTGAACTTCATTCAGGCAGAGGTAAGGTCCCCACTCTGCAGCCACCACTCAGACACC--CCCAGCCTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106522252 1639 - 171882078 AGGGCGGGATGGCTGTGTGGCAGCGTGGCCACCAGATGGGACCATCCCCCTGTGTTTG-CTCCGGGAGCCCAGCGATGGGGCC------CTGCCCCCGACACTATGGCCCCTCCTGCCAAGGCTTGGCCTGAGGGCTCCCTAGGGCCGGGGGAGGAAGCCCAGGAATGGCAGAGGG--CTGTTTTCCGGGCATGTGAGTCCCCCTGTAGCACTGCCCACAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGCTCTGCTTGCAAGTGGGAGGCCTGGAAAGGGGTCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAA--------GCCCATCCCA-GCACTGCTTCTGTGCTACGGGACAGCGTCAACCATCAGCCC-CCAACTCTCTGCACCTCCCACCCCTCCCTCAGCTGGAAGGAGGGCCCATTTCT-AA------------------ATCACCATTCCCA----CCTGTGCCCAGCCC-CTGCCA---GGCATA---CATGGAGGGTCTGAAAGGAGACCCCTGTCCCACGAGTGAGACTGATTAAGGAGCACCGTTGGTCAGCGTTGGGGGTTTCTGGGGGGTGAGAACTTGGTGAGGGTAAGAACTGGGGCCTTCCTGGATAGG-GGACACAAGCTGGTCTTGAGGGACACACAGGACTAGGGCAGATGAAGAGCAGGGAGGCTGGACCTGGAGGGT------------GGCCTTCCCTGGGGTGACA-GGGAAGGTGAATGCG-GGGAGGTCCTTTTGTGCAGGGGAG-CCAGAGCAGTGCCAGACTCGATGCCACCTGAGGGCCTGAGCTGCAG------------------GGCAGCCTAGGGCCGGGGAGGAAGGGGTGGGTGAGTGTGGCA------GGGCAGAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGGGCCACTGTTCCCATCCCAACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTCTGGACCATTGAGCAGCCCAGCAATGGGCGGGTAGTGCTGTGGGCGGTGCCAGGCACCGAGGTGTGCAGCTTCACGCAGGCCCAGCTGGACGGCAGGCTTGTGCTGTTCTCACACAGAGATGGGCGCTGAGGGCCAAGCCCCGGGTTCCTGGTGCCCGCAGGAGCACCCCGAGGTG-GGGAGCCAGCTCAGGTCAGTCAGACCCA--ATGC------CCCTGTCGCCAGAAGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAGCACACTTCCTCTAGACACTT--CT---GAGTGACGGCCCAGAAGCAAGTGCTCCTCTCGCTGGAGGGCAGCCGGACACTGTCTGTCTT----GGTGGGTGTGCTGATTGTGGGCATTCCTGG--GTGCTGG-GGGCTAGGGCAGAGCTGAGAGTGGGATGCCAGGGTCACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTGGATC-----ACAAAGGCTGATGGCCCCTTTTGCCTCTGGCAGGGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGTGCAGGCACCAACCTCCAGCTTCTGCTCT----TTGTGGTGCGGGGCCCCCAGCTAGGTCGGCTCTTCCATGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGCCAGAGGTAAGGGCCCCACTCTGCAGCCACCGCTCAGATGCC--CCCAGCCTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102491320 1651 - 162156779 AGGGC-GGATGGCTGTGTGGCAGTGTGGCCACCAGGTGGGACCATCCCCCTGTGTTTG-CTCCGGGAGCCCAGCGATGGGGCT------CTGCCCCTGACACTATGGCCCCTCCTGCCAAGGCTTGGCCTCAGGGCTCCCTGGGGCCGGGGGAGGAAGCCCAGGAATGGCAGAGGG--CTGTTTTTCGGGCATGTAAATCCCCCTGTAGCACTGCCTGCAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGCTCTGCTTGCAAGTGGGAGGCCTGGAAAGGGGTTCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAAGCCCCTGGGCCCATCCCA-GCACTGCTTCTGTGCTGCAGGACGGTACCAACCATCAGCCC-CCAACTCTCCGTGCCTCCCACCCCTCCGTCAGCTGGAAGGAGGGCCCATTTCTAAA------------------ATCACCATTCCca----cctgtgcccagccc-cttcca---GGCACA---CATGGAGGGTCTGAAAGGAGACCCCTGTCCCACGAATGAGACAGATTAAGGAGCACTGTTGGTCAGCGTTGGGGGTTTCT-GGGGGTGAGAACTTGCTGAGGGTAAGAACTGGGGCCTTCCTGGGTAGG-GGACACAAGCTAGTCTTGAGGGACACACAGGACTAGGGCAGATGAAGAGCAGGGAGGCTGGCCCTGGAGGGT------------GGCCTTCCCTGGGGTGACA-GGGAAGGTGAATGCG-GGGAGGTCCTTTTGTGCAGGGGAG-CCAGAGCAGAGCCAAACTCGATGCCACTTGAGGGCCTGAGCTGCAG------------------GGCAGCCTAGGGCCGGGGAGGAAGGGGTGGGTGAGCGTGGCA------GGGCAGAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGgaggccactgtgcccatcccaaCAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCCA-AGGGACCTGGTCTAGACCATTGAGCAGCCCAGCAATGGGCGGGTAGTGCTGTGGGCGGTGCCAGGCACCGAGGTGTGCAGCTTCACGCAGGCCCAGCTGGACGGCAGGCTTGTGCTGTTCTCACACAGAGGTGGGCGCTGAGGGCCAAGCCCCGGGTTCCTGGTGCCCGCAGGAGCACCCCGAGGTG-GGGAGCCAGCTCAGGTCAGTCAGACCCA--ATGC------CCCTGTCGCCAGAAGCCCTGGACGGAGGCATCCACTTTGGCCTCTGTGACGGTGAGCACACTTCCTCTAGACACTT--CT---GAGTGACGGCCCAGAAGCAAGTGCTCCTCTCGCTGGAGGGCAGCCGGACACTGTCTGTCTT----GGTGGGTGTGCTGATTGTGGGCATTCCTGG--GTGCTGG-GGGCTAGGGCAGAGCTGAGAGTGGCATGCCAGGGTCACGCTGCCTCTCTGCAGCCACG-GGCCTGGGCCTGGATC-----ACAAAGGCTGATGGCCCCTTTTGCCTCTGGCAGGGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGTGCAGGCACCAACCTCCAGCTTCTGCTCTTACTGTGTGGTGCGGGGCCCCCAGCTAGGTCGGCTCTTCCATGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGCCAGAGGTAAGGGCCCCACTCTGCAGCCACCGCTCAGATGCC--CCCAGCCTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7719323 1689 +  58131712 AGGCCAGGACGGCTGTGTGGCAGCACGGCCACCAGGTGGTGCCATCCACCCATGTTTG-CTCCGGGAGCCCTGCGATGGGGCC------CTGCTCCCCACATTATGGCCCCTCCTGCCAAGGCTCAGCCTGAGGGCTCCCTGGGGCCGGGGGAGGGAGTCCAGGAATGCCAGAAAGCTCTGTTTCCCGGGCATGTGAGTCCCACTGCAACTCTGCCTGCAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGCTCTGCTTGCAAGTGGGAGGCCTGAAAAGGGGTCCCCTTCGCCC----------------------------------AACATGAGGAGGGCCCGTAACTGCTCTGGAAGCACCTGGGCCCATCGCA-GCGCTGATTCTGTGCTGCAGAACA-TGCCAACCATCAGCCC-CCCACTCTCCGCACCACC-ACCCCTCCCTCAGCTGGAAGGAGGGCCCGTTTCTAAA------------------ATCACCATTCCCA----CCTGTGCCCGGCCC-TGGCCA---GGCACA---CACGGAGGCTCTGAAAGGAGACCCCTGCCCCACCAGTGAGACAGATTAAGGAGCACTGTTGGTCGGCGTTGGGGGTTTCT-GGGGCTGAGAACTTGGTGAGGGTAAGAACAGGGGCCTTCCTGGGTAGG-GGACACAAGCTGGCCTTGAGGGACACGCAGGACTAGGGCAGATGGAGAGCAAGGAGGCTGGGCCTGGAGGGTGACCTTCCCTGGGGCCTTCCCTGGGGTGACA-GGGAAGGTGAATGTG-GGGAGGGCCCTTTGTGCAGGGGAG-CCAGAGCAGTACCAGCCTCGATGCCACCTGAGGGCCTGAGC--CAGCAGAGTTGGAACCCTGGTggcagcccagggctggggaggaaggggtgggtgagcagggca------aggcagAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGGGCCACTGCGCCCATCCCTGCGGAGGCCCTGAGGAGCATGGACAGTTACTCTGGGCCCCTGAGCATCTGGTTTACGCCATTGAGCAGCCCAGCAAAGGGCGGATAGTGCTGTGGGCAGCGCCGGGCACCGAGGTGCACAGCTTCGTGCAGGCCCAGCTGGACGGCAGGCTCGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGGCCGGGCCCTGGGTTCCTGCTGCCTGAAGAGGTGCCCTGAGATG-AGGAGCCAGCTCAGGCCAGCCAGACCCA--ATGA------CTCTGTCCTCAGGAGCCCTGGACGGAGGCATCCACTTCAGCTTCTCTGATGACAAGCACACTTCCTCCAGACACTT--CTTCCGAGTGGCGGCCCAGAAGCAAGTGCTCCTCTCACTGGAGGGCAGCCAGACGCTGACTGTCTGCCCGGATGGGTGTGCTGATTGTGGGCATTCCGGGGTGTGCCAG-GAGCTGGGGCAGAGCTGAGGGTGGTGTGCCAGGGTCACACTGCCTCTCTGCAGACACA-GGCCTGGGCCTGGATC-----TCAGAGGATGATGGCCCCTTTTGCATCTGGAAGGGTCCGTCCAGCCACTCAGCAACCAGAGCCTCAGAGccagctccagcgcaggcaccgacccccagctcctgctcT-ACGGTGTGGTCCTGGGCCTCCAGCTAGGCCAGCTGTTCCACGCCTAGCAGGACAGCACAGGGGAGGCCCTGGTGAACTTCATTCAGGCAGAGGTAAGGTCCCCACTCTGCAGCCACCACTCAGACACC--CCCAGCCTC
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114236460 1681 - 132174527 AGGCCGGGACGGCTGTGTGGCAGCGTGGCCACCAGGTGGGGCCATCCACCCGTGTTTG-TTCCAGGAGCCCAACTCTCCGGCC------CTGCCCCCCACATTAAGGCCCCTCCTACCAGAGCTGGGCCCGAGGGCTCCCTGGGGCCGGGGGAGAGGGCCCAGGAATGCCAGAGGGCTCCATTTTCCCGGCATGTGAGCCCCACACCGGCATTGCCCACAAGTAATTGACCCAGC--AAGACCAGACCTCAGGACCTCAGGAACCGGCGCCTGCTCTGCTTGCAGGTGGGAGGCCTGAAGAGGGGTCCCCTTCGCCC----------------------------------AGCATGAGCAGGGCCAGGAACTGCTCTGGAAGCACCTG-GCCCGTCCCA-GCACTGCTTCTGTGCTGCAGGACACTGCCAGCCACCAGCCCACCCACTCTCTGGGAATCCCAGCCCTCCCTCAGCTGGAAGGAGGGCCCATTTCCAAA------------------ATCACCGTTCCCA-----CTGTGCACAGCCC-TTGCCA---GACACA---CATGAAGGGCCTGAAAGGAGACCCCGGCCCCATCAGTGAGGCAAATTAGGGAGCACTGTTGGTCAGGGTAGGGGGTTTTG-GGGAGTGAGAACTTGGTGAGGGTAAGAGCTGGGGCATTCCTGGGCAGG-GGACACAGGCTGGCCTTGAGGGACATGTGGAACTAGGGCAGA-GGAAAGCAGGGAGGCTGGGCCTAGAGGGTGGCCTTCCCTGGGGCGTTCCCTGGGGTGACA-GGGAAGGTGAATGCA-AGGAGGGCCCTTTGTGCAGGGGAG-CCAGAGCGGTGCCAGCCTCGATGCC---TGA-GGCCTGAGCTGCAGTGGGGTTGGAGCCCTGGTGGCCATGCAG-GCCGGGGAGGAAGGGGTGGGTGAGCGTGGCA------GGGCAGGACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGGACCACGGCACCTATCCCTGCGGAGGCTCTGAGGGGCACTGACGGCGACTCCAGGCCT--GAGGACCTGGTCTACACCATCGAGCAGCCCAGCAACGGGCGGGTGGTGCTGCGGGCGGCGCCGGGCACTGAGGTGCGCAGCTTCACACAGGCCCAGTTGGATGGCGGGCTCGTGCTGTTCTCACACAGAGGTAGGTCCTGAGGGCCTGGCCCCGGGTTCCTGCTGCCC-CTGGGGAGCCCCGAGGTG-GGGAGCCAGCTCCGGCCAGT-GGACTCA--ATGC------CCCCATCCCCAGGAGCCCTGGACGGAGGCTTCCGCTTCAGCCTCTCTGACGGCGAGCACGCTTCCTCCGGACACTT--CTTCCGAGTGACAGCCCAGAAGCAGGTGCTCCTCTCGCTGGAGGGCAGCCGGACACTGACCATCTGCCCAGGTGCGTGTGCTGGCCATGGGCATTCCTGG--TTGCTGG-GAGCCCGGGAGGAGCTGAAGGTTGCACGCCAGGGTGACACTGCCTCCCTGCAGCCACA-GGCCTGGGCCTGGATC-----CCAAAGGCTGATGGTCTCTTTTGCTTCTGACAGGGTCCGTGCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGCGCTGGGGCCGACCCCCAGTTCCTGCTCT-ACCGTGTGGTGCAGGGCCCCCAGCTGGGCCGACTGTTCCACGCCCAGCAGGACAGCGTGGGAGAGGCCCTGGTGAACTTCACTCAGGCAGAGGTAAGGGCCCCACTCTGTAGCCACCACTCAGACACC--TCCAGCCTC
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56891559 1509 + 124595110 AAGTTGGAAATGATGTGTGGTAAATTGGCCACTAGGTGGCAATATCCACCCATGTTAGCCCCCTGGAGTCCAACACTGG-------------------------------TTTTAACTTACTCTCGGACT---------CTGGGA--GGGAGAAGCAGCTCCTGGGTTTTAGAAGG--ACGTTTTCTGAG-ATGAGGGCCTCGTACCCAGAATGGCCTC-AGTGACTGGCCCTGT--GCCACATGGAA-CAGGG-CTCTGGAAGAAGACCTTGCCCTGCGTG--GGTGGGTAGCCT---ATGGGGCCTCCCCTGCAC----------------------------------TGCACG-GGTGGATTCCTAGCCGATTCAG------------------------------CTAGGAATCAGGA-----------ATCAGCTC-TCCGCTCTCCG--CCTCCCTCCCGAGCTTCAACTGGCAGGAGAGCCTATTTCTAAGTGTTCTGCG---CTGGCCAACACCATTGCCTCTGTCCTGTGCCCA-CCC-GCGCCAGATGGTATATGCCATGGCAGGAGGAAAGGGAAGGCCC--CCCCACCAGGGAGAC----CCGGCAGCACCTTTGGTCAGGGACAGGGATCTCT--GAAGTAAGGACC------------AAACAGGAACATTTCTAGGCAGGAGGTTGTGGTCTGGCTTTGAGGTACAATTAAGATCAGGGCTGGTGGAG---AAGGAACCT------------------------------------GCGTGACA-GAAAAGGAGAATGAG-AA---------------AGAAGGC-TCAGAATGGCACAGGTGTCCATGACAGCCGGG---CAGAGC-------AGGTTGGGGGCCTGGTGAAAGTCCAAGGGCCAGGAGGAAAGGGATGGAAAG---GACACAATGTGGACAGGACTTTCAC-GGTCTGTGTCCCTAGATCTGGGAGGGGGCCATTGTGCCCATCCCTCCTGAGGCCCTCAGGGGAACAGACAATGATTCGGGCCCA--GAAGACTTGGTCTACACCATCGAGCAGCCCAGCAACGGACGGATCGCCTTGAGGGTGGCACCAGACACCGAGGTCCACCGCTTCACACAGGCCCAGCTGGACAGTGGGCTTGTGCTGTTCTCACACAGAGGTGGGTGCTGAGAG-GGTTCTCCAGCCTCCTGGGG----TGGGGGTACCTTGAGGGGAGGGAGCTACCTTGGGCCAACAGGACCCA--GCTCCACCCACCCTGTGCTCAGGAGCCCTGGAAGGAGGCTTCCACTTCGACCTCTCTGACGGCGCACACACTTCTCCTGGACATTT--CTTCCGAGTGGTGGCCCAGAAGCAGGCACTCCTCTCCTTGGAGGGCACCCGGAAGTTGACCGTCTGTCCAGGTAGGTCTGC---------------------ATGCTGGCTAGCCGAGGCAGAATGGAGGATGGTAGCCCAGGACC--------------------CT-TGTCTGGGCTCCTGT-------CAAAAGCTAACAGGCTCCTCCATGCTTCACAGAGTCTGTGCAGCCGCTCAGCAGCCAGAGCCTGAGCGCCAGTTCCAGCACAGGCGCTGACCCTCGTCACCTGCTCT-ACCGGGTGGTAAGAGGCCCCCAGCTTGGCCGACTCCTCCATGCCCAGCAAGGAAGTGCAGAGGAGGTCTTGGTGAACTTCACCCAGGCTGAGGTAAGGGCCTCACTCCTCAGCCACCACACAGACCCCAACCTTACCTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1741575 1589 -  40214260 AGGCCGGTGCTGCTGTGTGGCCCCTTGGCCACCAGGTGATGCTGTCCTCA-GCGTTTG----CGCAGGCCCCGCGCTGAAGCCCCATCTCTGCGCACCGCACCGT-GCTCCCCCTTCCAGGGCTC--CCCGGGGGTTAGCCTGGGACTGAGAAGGT--CCCTGGGATCCCAGAGGGCTCGGTTTTCCGGGGCTGGGAGCCCCTCCCTAAGGCAGCC--CAAGGTCCTGACCCAGCTGGGGCCATGTAA-CAGGATCCCAGAAACGGGATCCTGCCCTGCTGGCAGGTGGGAGGCCCGACAGGGACTCCTCTTCCCTCTGAGCCTGGGGTGGGGCTGCCCGCACCCCTCCCTGACCTGGGTGGGCCTCGTGACCACGCTGGAAACACACGAGCCTTCGTCACGTGCTGCTTCCAGGCCACGGACAGGGGCCAAGCATCAGCCT-TTCCCACCCCGAGCCTCCCGTCCTTCCCTCACCTGGAAAGGGAGTGTGTTTATCAGCGTCTTGGGGACGCGACCCTCACCATTCCCG---TAGTGTGCCCAGCCCGTCCCCA---GACCCA---CGT----GCCCAGGAGGCAGGGCC--------------AGACGGTCGCGGTGCTGCCGCGGGTCGGGGCTGGGGGCTCTGCGGCGGGGAGAGCCTGGTGAGGGAA-----------------GAGCGGG-GG------GCTGGCCTCGCAGGACAAGCAGGATCAGGGC----GGAGAGAAGGGAGCCTGGGCCCG-----------------------------GGGTGGCAGGGGAAGGTCACTGGGCTGGAGGGGCCCTTGGGAGGGGGAGCCCAGGAGGACGCGGGCCTCGGTGACCGCCCAAGGCCTGAGCTG-AG-------------CCAGTGGGAGTGCTCCGCTCGGCGG----------------------------GGACGGAACCCTCACGGGCCTGTGTCCCCAGATGTGGGAGGGGGCCACCGTGCCCTTCCCTCCGGAGGCCCTGAGGGGTGCGGACAGCGACTCGGGCCCG--GAGGACCTGGTCTACACCATCGAGCGGCCCAGCAACGGGCAGGTGGTGCTGCGGGCGGCGCCAGGCACCGAGGTGCACAGCTTCACGCAGGCCCAGCTGGACGACGGGCTCGTGCTGTTCTCACACAGAGGTGGGTACCGCCGG-------------------------CTGGGGCGCCTGCGGACG-GGGA-CCCGCGGGGGCCAGCGAGACCCACTCTAC------GCCCGTCCTCAGGAGCCCTGGACGGAGGCTTCCGCTTCAGCCTGTCCGACGGCGAGCACGCTTCCCCCGGACACTT--CTTCCGCGTGACGGCCCAGAAGCAGCTGCTCCTCTCCCTGGAGGGCAGCCGGACGCTGACCGTGTGCCCAGGTGGGTCCGCC--CGGCGCGCTTGCCTCG-TGGGCCCG-GGGCCCGGCCCG----------------------TCACGCTGC--CCCCGCAGGCGCACGGCCTCGCCCTGCCTCCTGGTCCGAGGCCAGCGGGGCCCTGATGTGTCTCGCAGGGTCGGTCCAGCCGCTCAGCAGCCAGAGCCTGAGAGCCAGCTCCAGTGCCGGCACCGATCCGCAGCACCTGCTCT-ACCGGGTGGTGCAGGGCCCCCGGCTGGGCCGCCTGCTCCGCGCCCAGCAGGGCGGCACCGGGGAGGTCCTGGTGAACTTCACGCAAGCCGAGGTAGGGCCCCACCTCTACAGCCGCCACT---AGACT--CCCTGCGTC
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140    0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=505408.000000
s hg38.chr15_KI270850v1_alt    259130 439 +    430880 AGGTGGCCACTGTGCCATGGACATCATGTGGACA-----TGGGCACCAGCTCCAGCATCACCGGCAGC-AGACACTCCCAGGCCTGCCATGGTCCAGGACCTGGTGTCCTGCCCTCTAGGAGTCATCAGGCTGGCAGGGCAAGTTCATGTTCCCAGAAGGAGGGAGAAGAATGCAGGAAGTCGGGGATACAGGGCCCCAGAGCAGGGCTGGGGTCTTGGGGTGTGGCTTCCCGAAGGAAGCTAGAGCTGGACCCAAGGGTCTGGAGAGGGAGAACCATG-TAGGGGCACTAGTGGCACCCCAGCAGC-TGGT---GAGGGGCAGTGCTTGGT---GGGGGATGGAGTCGGAGGTGAAGCAGCTGCTGGGGCCTGTGGGCAGAGGTGTGAGCCTCGGGCTCAGATC--AGGTGCCAGCCAG---AGGAAGAGTGGATCCTAGGAGCAGATGAGCTGATG
s rheMac3.chr7              116087697 439 - 170124641 AAATGGCCACTGTGCCATGGACATCACGTGGACA-----TGGGTGCAGGCTCCAGCATCACTAGCAGC-AGACGCTCCCGGTCCTGCCATGGTCCAGGCCCAGGC------TCCTCCAGGAGCCACCAGGCTGGCAGGGCAAGTTCATGTTCCCAGAAGGAGGGAGAAGGATGCAGAAAGTCAGGGATACAGGGCCCTACAGCAGGGCTGGGGTTTTGGAGTGTGTCTTCCAGAAGGAAGCTACAGCCGGACCCAAGGATACCGAGAGGGGGCACCATG-TGGGGGCACTAGTGGCACCCCAGTAGCTTGGTCCAGAGGGGCAGTGCTTGGTCAAGAGGGATGGAGTTGGAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGCGTGAGCCTGGGGCTCAGGTC--AGGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGGGCAGATGAGCTGATG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106523891 438 - 171882078 AGGTGGCCGCTGTGCCATGGACATCATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGTCAGC-AGACACTGCTGGCCCTACCATGGTCCAGGCCCTGGTGTCCTGCCCTACAGGAGCTATCTGGCTGGCAGGGCAAGTTCATCTTCCCAGAATGAGGGAGAAGGATGCAGGAAGTTGGGGATACAGGGCCCTAGAGCAGGGCTGGGGTCTTGGGGTGTGGCTTCCAAAAGGAAGCTACAGCTGGACCCGAGGGTCTGGAGAGGGAGCACCATG-TAGGGGTACTAGTGGCACCCCAGTAGC-TGGT---GAGCGGCAGTGCTTGGT---GGAGGAGGGAGTTGAAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGATTCAGATC--AGGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTGATG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102492971 438 - 162156779 AGGTGGCCACTGTGCCATGGACGTCATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGTCAGC-AGACACTGCCGGCCCTACCATGGTCCAGGCCCTGGTGTTCTCCCCTCCAGGAGCTATCTGGCTGGCAGGGCAAGTTCATCTTCCCAGAATGAGGGAGAAGGATGCAGGAAGTTGAGGATACAGGGCCCTAGAGTAGGGCTGGGGTCTTGGGGTGTGGCTTCCAAAAGGAAGCTACAGCTGGACCCGAGGGTCTGGAGAGGGAGCACCATG-TAGGGGCACTAGTGGCACCCCAGTAGC-TGGT---GAGGGGCAGTGCTTGGT---GGGGGAGGGAGTTGAAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGATTCAGATC--AGGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTGATG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7721012 439 +  58131712 AAATGGCCACTGTGCCATGGACATCACGTGGACA-----TGGGTGCGGGCTCCAGCATCACTAGCAGC-AGATGCTCCCGGTCCTGCCATGGTCCAGGCCCAGGC------TCCTCTAGGAGCCACCAGGCTGGCAGGGCAAGTTCATGTTCCCAGAAGGAGGGAGAAGGATGCAGAAAGTCAGGGATACAGGGCCCTAGAGCAGGGCTGGGGTTTTGGAGTGTGTCTTCCAGAAGGAAGCTACAGCCGGACCCAAGGATCCCGAGAGGGGGCACCATG-TGGGGGCACTAGTGGCACCCCAGTAGCTTGGTCCAGAGAGGCAGTGCTTGGTCAAGAGGGATGGAGTTGGAGGTGAAGTAGCTGCT-GGGCCTGTGGGCAGAGGCGTGAGCCTGGGGCTCGGGTC--AGGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGGGCAGATGAGCTGATG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114238141 445 - 132174527 AGGTGGCCACTGTGCCATGGACATCATGTGGACATTATGTGGATGCCAGCTCCAGCGTCCCTGGCAGC-AGACACTCCCGGGTCTGTCACAGTCCAGGCCCTGGTGTCCTGCCCTCCAGGAGCTGCCAGGCTGGCAGGGCAAGTTCATATTCCCAGAAGGAGGGAGAAGGATGCAGGAGGTTGGGG---CAGGGCCCTAGAGCAGGGCTGGGGTCTTGGA-TGTGGCTTCCAGAAGGAAGCTACGGCCAGACCCGAGGGGCTGGAGACGGGGCACCATGTTGGGGGCACTAGTGGCACCCCAGTAGC-TGGT---GAGGGGCAGTGCTTGGTCCAGGGGGATGCAGTTGGAGGTGAAGCAGCTACT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGGCTCAGGTTCAGGGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTGATG
i calJac3.chr10             C 0 I 306
s mm10.chr9                  56893068 256 + 124595110 AGGTGGC-----TGCCAGC--------------------TGG-----AGCATCCACCTCACTGGCAGCTAGCTTCTCTGGATCCTG----------------------------------------------------------------TCCCAG----------------------------------------------------------CTCAGGGTTAGGCCTCCAGAAGGAAGCCACAGCTGGATCCCAGAGGCTGACAAGGG---CCCAGG-AAGGAGGGCCAGAGGCACCCCAGCGGC-TGGT---GAGGGCATGAGCTCACT---TAGG-------------------------CT-GGACAGTTTGGGATAAAGTTGAGCTTGGGACTCAGGAA--AGATGCCAGAGAATGTAAGCAAGCTGGAT-------GCAGATGAGTC----
i mm10.chr9                 C 0 C 0
e canFam3.chr30               1743164   0 -  40214260 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=749789.000000
s hg38.chr15_KI270850v1_alt    259569 670 +    430880 AAAGGCAGCTGAGTCGGCCAA---AAGGGGGAAGCCACTGTTCATCTGTCCTGGTGG---CTTCAGA---------GA---------AGAACTAGAGCTCTCAGCCATGGGTAGTGGCAGACTCTCTGTGGTAACTGTGCCACGG--------------------GGGCCAGCCCACTCATGGTTTAAATGAACACCTCTCCCCAAAGGCAGAATGGGAGTTGT-TCCATAG----CAGGGCAGGGCAGGGCAGGGCAGACTCTTGTGGGCCGCCCTGGG----CAGGCAGCACACCTGATGCTCCCATCAGGAGGCTGCGTGAGCATCTGGACCCAGCACATGATCACAGTGAGTTCTCGGCAGGGAGCGGTCTTGTGGGGCGCAGAGCTGACTCTGTCACTCAGGAGCCACGGCA-CACAGCACTGCCCCAAGTACCTCC--AGAGG-------------GG-ATCCCTGTCAGCCCTTGAAAATGGCAGAGCCCACCCC--AGCCCCCTTTTCAAGCTCCCTTGCTTCGGCAAGGACCTCCTGAGCCTGGCGCTCTC--------------------------CCTCCTGAGAGGT--------------------------------------GCAGATGGTACTCAGCAAGT----------GCAAAGCCG------------------------------------------------------------------------------AGGTTTCTTGGGCCTCTCACATC-AGCACCTCCCAGACCTCGGTTCTGTATTTCCCTGGAGCTCCACTCCTGCTATGGT----------GCCCTTCCCACAATGAGATATTCATCAGGCTGGTGTCTACAGCTGCTGCGTACCCTCAGTTG
s rheMac3.chr7              116088136 689 - 170124641 AAAGGCAGCTGAGTCGGCCAA---GAGGGTGAAGCCACCGTTCATCCATCCTGGTAG---CTTCAGAGACCACTAGGA---------AGAACTAGAGCTCTCAGCCGTGGGTAGCAGCAGACTCTGTG--ATAACTGTGCCATGG--------------------GGGCCAGCCCAGTCATCGCTTAAAAGAACACCTCTTCCCGAAGGCAGAACGGGAGTTGT-TCCATAG----CAGGGCAGAGTGGCGCAGACC---CTTCCGTGGGCCATCCTGGG----CAGGTGGTGCAACTGATGCCCCTGCCAGGAGGCTGCATGGGCATCTGGATCCAGCACATGATCACAGTGAGTTCTGGGTAGGGAGCGGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGGAGCCATGGCA-GGCGGTACTGCCCCAAGTACCTCC--AGAGGGGTCTGGCTGGCTGGTCCCCCTCCCAGCCCTCAAAAATTGCACAGCCCACCCC-TAGCCCCCTTTCCAAGCTCCCTTGCTTGGGCAGGGACCTCCTGAGCCTGGCACTCTC--------------------------CCTCCTGAGAGGC--------------------------------------ACAGATGGTATTCAGCAAAT----------GCAAAGCAG------------------------------------------------------------------------------AGGTTTCTTGGGCCTCTCACATC-AACACCTCCCAGTCCCAGGTTCTGTATTTCCCTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGATATTCATCAGGCTGGTGTCTACAGCTGCTGCATACCCTCGGTTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106524329 670 - 171882078 AAAGGCAACTGAGTCGGCCAA---GAGGATGAAGCTGCCATTCATCCATCCTGGTGG---CTTCAGA---------GA---------AGAACTGGAGCTCTCAGCCATGGATAGCAGCAGACTCTGTGTAGTAGCTGTGCCATGG--------------------GGGCCAGCCCAGTCATCGTTTAAATGAACACCTCTCCCCAAAGGCAGAACAGGAGTAGT-TCCATAG----CAAGGCAGAGCAGGGCAGACT---CTTTTGTAGGCCGTCCTGGGCCTACAGTTATCACACCTGGTGCTCCCACCAGGAGACTGTGTGGGCATCTGAACCCAGCACATGATCACAGTGAGTTCTGGATAGGGAACAGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGAAGCCATGGCA-TGCGGTACTGCTCCAAGTACCTCC--AGAGG-------------GGCCCCCCTGCCAGCCCTTGAAAATGGCAGAGCCCACCCC-TAGCCCCCTTTCTAAGCTCCCTTGCTTGGGCAAGGACCTCCTGAGCCTGGCATTCTC--------------------------CCTCCTGAGAGGT--------------------------------------GCAGATGGTATCCAGCAAGT----------GCAAAGCTG------------------------------------------------------------------------------AGGTTTCTTGGGTCTGTCACATC-AGCACCTCTGAGGCCTGGGTTCTGTATTTCCCTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGATATTCATTGGGCTGCTGTCTACAGCTGCTGCTTA---GCAGTTG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102493409 668 - 162156779 AAAGGCAACTGAGTCAGCCAA---GAGGATGAAGCTGCCATTCATCCATCCTGGTGG---CTTCAGA---------GA---------AGAACTGGAGCTCTCAGCCATGGATAGCAGCAGACTCTGTGTGGTAGCTGTGCCATGG--------------------GGGCCAGCCCAGTCATCGTTTAAATGAACACCTCTCCCCAAAGGCAGAACAGGAGTTGT-TCCATAG----CAAGGCAGAGCAGGGCAGACT---CTTTTGTAGGCCGTCCTGGGCCTACAATTATCACACCTGGTGCTCCCACCAGGAGACTGTGTGGGCATCTGAACCCAGCACATGATCACAGTGAGTTCTGGATAGGGAACAGTCTTGTGGGGTGCAGAGCTGACTGTGTCACTCAGAAGCCACGGCA-TGCGGAACTGCTCCAAGTACCTCC--AGAGG-------------GGTCCCCCTGCCAGCCCTTGAAAATGGCAGAGCCCACCCC-TAGCCCCCTTTCTAAGCTCCCTTGCTTGGGCAAGGACCTCCTGAGCCTGGCATTCTC--------------------------CCTCCTGAGAGGT--------------------------------------GCAGATGGTATCCAGCAAGT----------GCAAAGTTG------------------------------------------------------------------------------AGGTTTCTTGGGTCTCTCACATC-AGCACCTCTCAGGCCTGGGTTCTGTATTTCCCTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGGTATTCATCGGGCTGCTGTCTACAGCTGCTGCTTA---GCAGT--
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7721451 675 +  58131712 AAAGGCAGCTGAGTCGGCCAA---GAGGGTGAAGCCACGGTTCATCCGTCCTGGTGG---CTTCAGAGACCACTAGGA---------AGAACTAGAGCTCTCAGCCATGGGTAGCAGCAGACTCTGTG--ATCACTGTGCCATGG--------------------GGGCCAGCCCAGTTATCGCTTAAACGAACACCTCTTCCCAAAGGCAGAACAGGGGTTGT-TCCATAG----CAGGGCAGAGTGGCGCAGACT---CTTCCGTGGGCCGTCCTGGG----CAGATGGTGCAACTGATGCTCCCGCCAGGAGGCTGCATGGGCATCTGGACCCAGCATATGATCACAGTGAGTTCTGGGTAGGGAGTGGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGGAGCCATGGCA-TGCTGTACTGCCCCAAGTACCTCC--AGAGG-------------GGTCCCCCTGCCAGCCCTCAAAAATGGCAAAGCATACCCC--AGCCCCCTTTCCAAGCTCCCTTGCTTGGGCAGGGACCTCCTGAGCCTGGCACTCTC--------------------------CCTCCTGAGAGGC--------------------------------------GCAGATGGTATTCAGCAAGT----------GCAAAGCCG------------------------------------------------------------------------------AGGTTTCTTGGGCCTCTCACATC-AACACCTCCCAGTCCCAGGTTCTGTATTTCCCTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGATATTCATCAGGCTGGTGTCTACAGCTGCTGTGTACTCTCGGTTG
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114238892 747 - 132174527 aaaGGCAGCTGAGTAGGTCAA---AAGGGTGAAGCTGCCATTCATCCATCCTGGTAG---CTTCAGAAACTACCAGGA---------AGAACTGGAGCTCTCAGCCATGGGCAGCAGTAGACTCTCTG--GTAACTGTGCCGTGG--------------------AGCCCAG--CAGCCATTGCTTAAATGAACACCTCTTCCCGAAGGCAGAACAGGAGTTGC-TGCATAG----CAGGGCAGAGCAGGGCAGACT---TTTCTGTGGGCTGCCCTGGG----CAGGCAGCGCACCTGATGCTCCCACCAGGAGGCTGCATGGGCATCTGGACCCAGCACTTGATGCCAGTGAGTTCTAGGTAGAGAGAGGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGAAGCCATGGCG-CACAGGACTGCCCCAAGTACCTC-----AAG-------------GGTTCCCCTGCCAGCCCTTGAAAATGGCAGAGCTCCCCTCCCAGCCCCCTTTCCAAGCTCCCTTGCTTGGGCAAGGACCTCCTGAGCCTGACAGTCTC--------------------------CCTCCTGAGAGGT--------------------------------------GCAGATGGTGTTCAGCAAGT----------GGAAAGCTGAGGTCCCCACCCAGCAAGTGGCTCAGATGGGGAGCCGTTGGGCATCTGGAAGGAGGTGGCCTTCAC-AGTGTGGAATAAGGTTTCTTGGGCCTCTTACATC-AATACCTCCCAGGCCTGGGATC--TATTTTCCTGAAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATTAGATATTCAGCAGGCTGGTGGCAACAGCAGCTGTGTACCCTCAGTTG
i calJac3.chr10             I 306 C 0
s mm10.chr9                  56893324 752 + 124595110 CCAGGCA---GAGTGGGCCAGTCTGAGG--GACACTGAGATCTACTCTTCGGAGCAGAGTCCCTAGGGCACACCAGGACCACCGATCAAAATTATAATTTCCAGCCGCATGTTGAGGCTGACTGAGCG--GCTGAGATGCCAGGGCTGTCGGTGCTAACTAGTGTGAGCCAG--CAGTCATCA-------------CTCTTCAC------------GGATTGGTCCCCACAGGGTCTAAGGCACTGT-GAGCAG------CTCCTCTGGGCTACGGTAGA---GCAAACAGCATGCTTGGTGCTCCCACCTAGAGGCCACGTGGTCA--------CAGCA--TGACCCCTATTCTTTCTACAT---GAGCAGGATCCAAGAGAACATGGCTGGCCCTGCCACT--GGATCTGCAGCACTATGGTGCTGCTCCAAGAACTTTCCAACAGG-------------GCTTACCCTG---ACCCTTGAAAAGGGCAGGACCCACCTC-CGGGTCCCTTTCCAG---CACT--------CAGAGGCCTCCTGGGCCCCACAAGTTCCTTTCTACCCCATCAGGGTGTGCGCTCCTCCTGAGAAGTACTGGAACACAGAGGGGGGAGGTGCGGGGTGTGGGGGAGCAGCTCCCACCCAGCAGGTAGCTCAGAGGAGGAAGCTG-----------------------------------------------------------CCTTAAAGAGGGTCAAGTAAGATTCCTCAGACCCTGCACTTCTTTTGCTTCTTTGGCTTCTGTTCTCACTTCTCCCAGGCCCTAGCATCTACCATAGCCCCTTTCTGACCCCTCCCCACAATGAAATCT-------GCCAGTGGCTAGGGCAGCTGTATGTCCTGAGTCA
i mm10.chr9                 C 0 C 0
e canFam3.chr30               1743164   0 -  40214260 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=429884.000000
s hg38.chr15_KI270850v1_alt    260239 285 +    430880 CTGGGAGCCTTTGTCAA-GAATGCCCAGGAATGAGGAGGGCACAGGACCCAGACCATCAGCAACCCTCTTGCACTCTATAGTCCCATGTTACTCAGAGCTTCCC-CATGCTCCAGCAAGATGAAGG--ACTAGATTGAATGGGCA--------CCAGGCTGGCAGTGCCACCCAGGAAAGCTGGGAAGAGGCTACATG-----GGCT---ACCTGGCCCACTCAGGGAGG-AGGGCAGGACTGGGTATTGtctt----gacagcaaccctgtcccacaacactgaactgggcagggaaggggtcaggtgt
s rheMac3.chr7              116088825 292 - 170124641 CTGGGAGCTTTTGTCAA-GAATGCACAGGAATGGGGAGGGCACGGGAGCC-AGCCATCAGCAACCCTCGTGCACTCTATAGTCCCATGTTACTCAGAGCTTCCC-CATGCCCCAGCAATATGAAGG--ACTAGACTGAATGGGCACCAGGGTACCAGGCTGGCAGTGCCACAAAGGCAAGTGGGGAAGAGGCTACATG-----GGCT---ATCTGGCCCACTCAGGGAGG-AGGGCAGGACTGGGGATTGTCTT----GACAGCAGCCCTGTCCCACAACACTGAACTGGGCAGGGAAGGGGTCAGATGT
i rheMac3.chr7              C 0 I 9
s macFas5.chr7              106524999 292 - 171882078 TTGGGAGCCTTTGTCAG-GAATGCCCAGGAATGAGGAAGGGACGGGACCA-GACCATCAGCAACCGTCTCGCACTCTATAGTCTCATGTTACTCAGAGCTTCCC-CGTTTTCCAGCAATATGAAGG--ACCAGATTGAATGGGCACCAGGGGGCCAGGCTGGCAGTGTCACCCAGGAAAGCCTGGAAGAGGCTACATG-----GGCT---ACCTGGCCCACTCGGGGAGG-AGGCCAGGACTGAGTCTTGTTTT----AACAGCAGCCCTGTGCCacaacactgaactgggcagggaaagggtcaggtgt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102494077 291 - 162156779 -TGGGAGCCTTTGTCAG-GAATGCCCAGGAATGAGGAAGGGACGGGACCA-GACCATCAGCAACCGTCTCGCACTCTATAGTCTCATGTTACTCAGAGCTTCCC-CATTTTCCAGCAATATGAAGG--ACTAGATTGAATGGGCACCAGGGGGCCAGGCTGGCAGTGTCACCCAGGAAAGCCTGGAAGAGGCTACATG-----GGCT---ACCTGGCCCACTCGGGGAGG-AGGCCAGGACTGAGTCTTGTCTT----GACAGCAGCCCTGTGCCACAACACTGAACTGGGCAGGGAAGGGGTCAGGTGT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7722126 292 +  58131712 CTGGGAGACTTTGTCAA-GAATGCACAGGAATGGGGAGGGCACGGGACCC-GGCCATCAGCAACCCTCGCACACTCTATAGTCCCACATTACTCAGAGCTTCCC-CATGCCCCAGCAGTATGAAGG--ACTAGACTGAATGGGCACCAGGGTACCAGGCTGGCAGTGCCACACAGGCAAGTGGGGAAGAGGCTACATG-----GGCT---AACTGGCCCACTCAGGGAGG-AGGGCAGGACTGGGGATTGTCTT----GACAGCAGCCCTGTCCCACAACACTGAACTGGGCAGGGAAGGGGTCAGGTGT
i chlSab2.chr26             C 0 C 0
s calJac3.chr10             114239639 290 - 132174527 CCGGGAGCCTTTGTCAA-GAATGCCCAGGAAGGGAGAGGGCACAGAACCA-GGCCCCCAGTGACCCTCTCGCACTCTACAGCCTCATGTGACTCAGAGCTGCCC-TGCACCCCAGCAATATGAAGG--ACTAGACTGAATGGCCACCAGGGG-CCAGGCCGGCAGTGCCACCCAGGAAAGCCGAGAAGAGGCTACGTG-----GGCT---ACCTGGCCCATTTGGGGAGG-AAGGCAGGACTGGGTATTGTCTT----GACAGCAGGCCTGTCCCacaacactgaa-tgggcagagaaggggtcaggtgt
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56894076 292 + 124595110 CTGGGAGCC-TTGTTAT-CAGAGTCCTGGAAGGAGGAGAGGCTGGGACAA-AGCCA-CGGTGCCCCTCCCCCACCCAGCAG-CACAC---ACACACCCCCCCCC-CATGCTCCAGTAACACGAAGGACACAAGGCTG--TGGCCACCAGGGGGCCAGACTGGCAGTGCCACCCAAGAAGGCTGGAAAGAGGCTACGTGGCACAGACA---CCCTCCTCCCCTGGCAGAGGTCAGGCAGCAGTAGGCAGTGGATTGACAGACAGTACCACTGCCCTTCAAGAC---ACTGGGC-TAGAAGGGCTCAGGTAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1743164 274 -  40214260 CTGGGAGCCACTGTCATCGGATGCCCGGGAG-GGGGAGGGGACAGGACCA-GGCCTTTGGGGTTCCTCCC------------CCCAC---CCACGGAGCTTTCCGCGCACCCCAACAAGATG--GG--ATGAAAGGGAGTGGCCAGCAGGGGGCCAGGCTGGCAGTGCCACCCAGGGAAGCTGGGAAATGGCTTCGTGGCAGAGACTTTGTCCTGGCTT----------G-GGGGCAGGACTGGGTAGTGTCTC----GACAGCACCACTGTCCTGCCGTATtgagttgggtggggcagggatcgggtgt
i canFam3.chr30             C 0 C 0
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=4200.000000
s hg38.chr15_KI270850v1_alt    260524 2 +    430880 cc
s macFas5.chr7              106525291 2 - 171882078 cc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102494368 2 - 162156779 CC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7722418 2 +  58131712 CC
i chlSab2.chr26             C 0 I 32488
s calJac3.chr10             114239929 2 - 132174527 cc
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56894368 2 + 124595110 CC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1743438 2 -  40214260 cc
i canFam3.chr30             C 0 C 0
e rheMac3.chr7              116089117 9 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140 0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=95531.000000
s hg38.chr15_KI270850v1_alt    260526 107 +    430880 tcatttttcagataagaaaactgaagctcccagagggca-ggtaaatgtattcagagcacatggcgagtaagaggcaaat------------cttctgccagcaagtccaggattttttt
s macFas5.chr7              106525293 107 - 171882078 ccacttttcagataaggaaactgaagctcatggagggca-ggtaactgtattcagagcacatggtgagtaagagacacaa------------cttctgcctgcaagtctaggatttcctT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102494370 107 - 162156779 CCacttttcagataaggaaactgaagctcatgGAGGGCA-GGTAACTGTATTCAGAGCACATGGCGAGTAAGAGGCACAA------------CTTCTGCCTGCCAGTCTAGGATTTCCTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7754908 108 +  58131712 ccatttttcagataaggaaacggaggctcttggagggcagggtaactttatttagaacacatggcgagtaagaggcaaaa------------cttctgcctgcgagtccaggatttcctT
i chlSab2.chr26             I 32488 C 0
s calJac3.chr10             114239931  95 - 132174527 ccatttttcagatacagaaatggaggctcatggagggca-agtgcct------------catggtaagtaagaggcaaaa------------cttctgcctgcaagtctaggatgtcctt
i calJac3.chr10             C 0 C 0
s mm10.chr9                  56894370  99 + 124595110 TCAGTTTGTAGATAAAGAAGT----GCATATGCAGTCTG-GTGACTTTTATTCAGTAT-CATGGCTCGTAAGAAGCAAGA------------CCAGGAT---TAAGCCTTGAGTTCCCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1743440 116 -  40214260 -cgttttgcagataaggaaactgaggcttacggaggtca-ggcgacc--gtccagagcatgtggtcggtaagaggcaaaaccaggattccggctgctaactactagtccagGCCtttttt
i canFam3.chr30             C 0 n 0
e rheMac3.chr7              116089117   9 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=102863.000000
s hg38.chr15_KI270850v1_alt    260633 111 +    430880 caccagaggacattgcttGGTCCCCAGAGCT---CAGGACCCTGTGTTTTGTCTCACT----CCCACCCACA---GAGCTCC----TGTATCCAGGCATCA-----ACTCCAACTCCcactcctggaggc
s macFas5.chr7              106525400 111 - 171882078 CACCAGAGGACACTGCTTGCTCCCCAGAGCT---CAGGACCCTGTGTTTTGTTTCACT----CCCACCCACA---GAGCTCC----CGTATCCAGGCATCA-----GCTCCAACTCCcactcctggaggc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102494477 111 - 162156779 CACCAGAGGACACTGCTTGCTCCCCAGAGCT---CAGGACCCTGTGTTTTGTTTCACT----CCCACCCACA---GAGCTCC----CGTATCCAGGCATCA-----GCTCCAACTCCCACtcctggaggc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7755016 111 +  58131712 CACCGGAGGACACTGCTTGCTCCCCAGAGCT---CAGGACCCTGTGTTTTGTCTCACT----CCCACCCACA---GAGCTCC----TGTATCCAGGCATCA-----GCTCCCACTCCCACTCCTGGGGGC
i chlSab2.chr26             C 0 T 32700
s calJac3.chr10             114240026 110 - 132174527 caccggaggacactgcttGCT-CCCGGAGCT---CAGGACCCTGTGTTGTGTCTCACT----CCCACCCGCA---GAGCTCC----TGTATCCAGGCATCA-----GCTCCCACTCCCACTCCTGGGGGC
i calJac3.chr10             C 0 I 61784
s mm10.chr9                  56894469 124 + 124595110 CACCTAAGGATACTG-----TCCCCGCACCTGGCCCGAGTTTTGCCTTTTG-CTCGCTAGGGCCTTCTCGTACAGGAGCACCAACAGGCAGCCAGGTGTCACGCTGACCTCCACCACCACTGCTGGGGGC
i mm10.chr9                 C 0 C 0
e canFam3.chr30               1743556   0 -  40214260 I
e rheMac3.chr7              116089117   9 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=2730.000000
s hg38.chr15_KI270850v1_alt    260744 9 +    430880 cgaggcagg
s macFas5.chr7              106525511 9 - 171882078 ggaggtggg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102494588 9 - 162156779 ggaggtggg
i papAnu2.chr7              C 0 C 0
s mm10.chr9                  56894593 9 + 124595110 AGGGGAGGG
i mm10.chr9                 C 0 N 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556 0 -  40214260 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e rheMac3.chr7              116089117 9 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140 0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=297523.000000
s hg38.chr15_KI270850v1_alt    260753 1330 +    430880 aggatcacttgagcccaggagttcgagaccagcctgggccacatagtgagaccttgtctccacacaaaaattttaaaaatagctgggcttggtggtggcatgtgcctgtagtcctagctactcgagaggctgacgttggaggatcactttgagcccaggaggtggaggctgcagtgagcagtcatcactgtactccagcctggtgacagagcgagaccctatcACCGCCCCCCGCCCCACCAAAAAAA-----AACTGAGTAGACAGGTGTCCTCTTGGCATGATAAGTCTTAAGTCCCCTCCCAGATCtgtgacatttgacaggtgtcttttcctctggacctcggtgtccccatctgagtgagaaaaggcagtgggGAGGTGGATCTTCCAGTCGAAGCGGTATAGAAGCCCGTGTGAAAAGCCATACTCCAAGGGGCTCCAAGTCCAGCGCACAGTCCCAGAAGGGCCCAGCAAGGCAGCCAGGGCGGCACAGGCACCAGGTCCCAACCTTCTTCCCTGTTTGCCCACTCTCAGACCCCGGAGTTCATCATCTCGGAGCCGCTGGCCAATATGTACTCATGTGGGAACCAGAACACACTGATGGAGGAGTTGGCAGAGCAGGCACAGCAGCATGACGAGATGCTGCACATGCACCACGCGCTGAAGGAGGCGCTCAGCATCATCGGTGACATCAACAGGACCACTGTCACCATGCCCATGCCCCCGCCCGTGGACGACACCTGGTTGT-----CAGAGCATCCCTGACGAACACAGGTACCAAAGACTGCCCCCCACGGCCCCAAAATCCCCCA-CCCGGGATGCCCAGAGGAGTGCCCTGGGGGCAAGTGGCACACCCCCTCACCGGGGTGGCTCCCACCTGGAGTGACGGGGGGAGCTTGACAAGGAGCACTGGCTGCCGGGGGGGGGGGGGGTGTGTGGAGCTGGGATGTTCTCGCTGCTGGGGGCGGGGCTTAAGCTCTGGCAACCGCCTTG-----------------------------GGGTGTGGCCGGCACTGCGCTGGGGCGGGGT---------------CGCCCATCTCTCCCCTCCCTGT---------------GCCTCCCAGGTCGCCCAAGTCCAGCGTCAGGATGCCCAGGCCCTGCCATGTCCCTAGCCCGGCCTGGGTGGCAGGGCCCAGCTCCTGGGCGGCAGGACCCAGCTCCTGGGCTTCCTCCTGCCGGGTCCGCCCTTGGGGAAGCG-TGCCCCATACCCTCCAGGCCAGAGGCTTCCCCTGATCCCTTTGGGCCCTACCCCCCTGGTGCTCTCGTGCCCCAGCCGGGGTCCCCAGGTAAGTAGGGGCTGAATGCGGCTGAAGAGGCCGCTGGACAGGCGTGGCCAGGAAGGAA
s macFas5.chr7              106525520 1364 - 171882078 aggatcacttgagcccaggagttccataccatcctcggcaacatagtgagaccttgtctctacacaaaaattttaaaaatagctgggcttgatggtggcacgtgactgtagtccgagctacttgagaggctgacattggaggatcactttgatcccaggaggttgaggctgcagtgagcagtgatcactgtactccagcctggtgacagagcgagaccctatcACCACCCCCACCCCGGCCAAACAAAACAACAACTGAAAAGACAAGTTTCCTATTGGCATGATAGGTCCTGAGTCCCCTCCCAGATCAGTAACGTGGGACAGGTGTCTTTTCCTCTGGACTTCGGTGTCCCCATCTGAGTGAGAAAAGGCAGTGGGGAGGTGGATCTTCCAGTTGAAGCGGTGTAGAAGCCAGTGTGAAAAGCCATACTACAAGGGGCTCCAAGTCCAGCGCACCGTCCCAACAGGGCCCAGCACGGCAGCCAGTGCGGCACAGGCATCAGGTCCCGACCTTCTTCCCCGATTGCCCACTCTCAGACCACGGAGTTCATCATCTTGGAGCTGCTGGCCAGTCTGTACTCATGTGGGGACCAGAACACACTGGTGGAGCAGTTGGCAGAAGAGGCACAGCGGCGCGACGAGATGCTGCGCATACACCACATGCTGAAGGAGGTACTCACCATCATCGGGGACATCAACAAGACCACCGTCAGCCTGCCCCTAAGCCTGCATGTGGACGACTCATGGCTGCAGGTGCAGAGCCTCCCGGACGAACGCAGAGACCAGGGCCGG--CCCCACGGTCCCAAAGTCCCCCAGCCTGGGCCGCCCAGAGGACTGCCAAGGGGGC-AGTGGCGTGGTCCCTCACCAGGGTGGCTGCTACCTGGAGTGAGGGGCGGAGCTTGCTGAGGAGCACTGGCTGCGGGGCGGG----------GTGGAGCTGGGCTGTTGGTGCTGCT-GGGGCGGGGCTTAAACTCTGGCGACCACATCAGAGCGTGGCAGGGAGGAGCTTCCGTGCATGGGCGTGGCCGGCACTGGGCTGGGGCGGCGCCTCAGGGGGCGGAACCGCCTATGTCTCCTGTCCCTGTGCCTTGCTGCCTGTCGCCTTGCAGGTCGCCCAAGTCCAGCCCCGGGATGCCCAGCCCCCGCCATGTCCCCAGCCCAGCCTGGGTTGC----------------------GGGCCCGGCTTCTGGGCTTCCTGCTGCTGGGTGCGCCCTTGGGGAAGTGCCACCCCGTATCCTCCAGACCAGAGGCTTCCCCTGATCCCTTC-GGCCCTACTCGCCAGGTGCTCTCATGCCCCACTAGGGATCACCAAGTAAGTAGGAGCTGAAAGCAGCCAAAGAGGCCGCTGGAGGGGTGTGGCCGGGAAGGAA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102494597 1361 - 162156779 aggatcacttgagcccaggagttccagaccagcctgggcaacatagtgagaccttgtctctacacaaaaattttaaaaatagctgggcttggtggtggcacGTGagtgtagtccgagctactcgagaggctgacattggaggatcactttgatcccaggaggttgaggctgcagtgagcagtgatcactgtactccagcctggtgacagagcgagaccctatcaccacccccacccctgccaaacaaaacaacaactgaATAGACAAGTATCCTATTGGCATGATAGGTCCTGCGTCCCCTCCCAGATCAGTAACGTGGGACAGGTGTCTTTTCCTCTGGACCTCGGTGTCCCCATCTGAGTGAGAAAAGGCAGTGGGGAGGTGGATCTTCCAGTTGAAGCGGTGTAGAAGCCAGTGTGAAAAGCCATACTCCAAGGGGCTCCAAGTCCAGCACACTGTCCCAGCAGGGCCCAGCACGGCAGCCAGTGCGGCACAGGCATCAGGTCCCGACCTTCTTCCCCGATTGCCCACTCTCAGACCACGGAGT---TCATATTGGAGCTGCTGGCCAGTCTGTACTCATGTGGGGACCAGAACACCCTGGTGGAGCAGTTGGCAGAAGAGGCACAGCGGCGCCACGAGATGCTGCGCATGCACCACATGCTGAAGGAGGTACTCACCATCATCAGGGACATCAACACGACCACCGTCAGCCTGCCCCTAAGCCTGCATGTGGACGACTCCTGGCTGCAGGTGCAGAACCTCCCGGACGAACGCAGAGACCAGGGCTGG--CCCTAAGGCCCCAAAGTCCCCCAGCCTGGGCCGCCCAGAGGAATGCCAAGGGGGC-AGTGGCGTGGTCCCTCACCAGGGTGGCTGCTACCTGGAGTGAGGGGCGGAGCTTGCCGAGGAGCAGTGGCTGCGGGGCGGG----------GTGGAGCTGGGCTGTTGGTGCTGCT-GGGGCGGGGCTTAAACTCTGGCGACCACATCAGAGCCTGGCAGGGAGGAGCTTCTGTGCATGGGCGTGGCCGGCACTGGGCTGGGACGGCGCCTCAGGGGGCGGAAACGCCCATTTCTCCTGTCCCTGTGCCTTGATACCTGTCGCCTTGCAGGTCGCCCAAGTCCAGCCCCGGGATGCCCAGCCCCCGCCACgtccccagcccagcctgggttgC----------------------GGGCCCGGCTTCTGGGCTTCCTGCTGCTGGGTGCGCCCTTGGGGAAGTGCCACCCCGTATCCTCCAGACCAGAGGCTTCCCCTGATCCCTTC-GGTCCTACTCGCCAGGTGCTCTCATGCCCCACTCGGGATCACCAAGTAAGTAGGGGCTGAAAGCAGCCAAAGAGGCCGCTGGAGGGGTGTGGCCGGGAAGGAA
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e rheMac3.chr7              116089117    9 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140    0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=370220.000000
s hg38.chr15_KI270850v1_alt    262083 508 +    430880 ATGGGACTGGATTCCAGAGCACCACATCTGGCCGCCAGAACTGGCCGTCTCCATCCAAGGCACTGGGACCATGGGTGCCGGAGCCACGTGTGGCCGAGGGCTGGCAGAGCCTGCCCCCCAGGGATCACTGAGTCCTGGAGGTGGTCGTTTTTGAGGAGGGGGCTGTGGGGCTCGTCCCACCTGCCGCCTTCTGTCCAGCACTTGCATGACACTTCCCTCTATTTTCACTCTTGGCGGCTG-CCCACACGTTGCATTTCTCTTCCTTTCTTCTCGCTGTCCTCCATCCTCCATTCCGTCCAACTCCTAGCCCAGTCCCGGGGGCGCCTACTTCAGGTCTGAGAGTCTGAACTCCGAGATGCTCTGGGTGTGTGGATTTCCTTCAGCTACCCTGATGTCCCCACTTCCAAGTCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCGGCCACTGGACCACAGGAGCAGAGGCGAGTCTGTGACTGTGTGACCAGCAAGGTG-----TGTGATGTGTG
s rheMac3.chr7              116089126 504 - 170124641 ATGGGACTGGATTCCAGAGCATCGGACCTGGATGCCAGAACCGGCCCTCTCCTTCCAAGGCACTGGGACCATGGATGCCAGAGCCACGTGTGGCTGAGGGCTGGCAGAGCCTA-CCCCCAGGGAGCGCTGAGTCCCGGAGGTGGTCATTTTTGGGGAGGGGGCTATGGAGCTCATCCCACCTGCCCCCTTCTTTCCAGCACTTACATGGCGCTTCCCTCTATTTTCACTCTTGGCGGCCGCCCCACCCATTGCATTCCTCCTC----CTTCTCGCTGTCCTCCATCCTCCATTCCCTCCAACTCCTCTCCCAGCCCCTGGGGAGCCTACCTCAGGTCAGAGAGTCTGAACCCTGAGATACGCTGGGTGTGTGGATTTCCTTCAGCTACCCTGATGTCCCCACTTCCAAGTCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCAGCCACTGGACCACAGGAGCAGAGACCAGGCTGTGACTGTGTGACTATCAAGGTT-----TGTGATGTGTG
i rheMac3.chr7              I 9 I 28
s macFas5.chr7              106526884 493 - 171882078 ATGGGACTGGATTCCAGAGCATCCGACCTGGCCGCAAGAACTGGCCGTCTCCATCCAAGAAACTGGGACCATGGCTGCCAGAGTCACGTGTGGCCGAGGGCTGGCGGAGCCTGTCCCCCAGGGAGGGCTGAGTCCTGGAGGTAGTCGTTTTTGAGGAGAGGGCTGTGGGGCTCGTCCCACCTGCCCCCTTCTTTCCAGCACTTAGGTGGCACTTCCCTCTATTTTCACTCTTGGTGGCCG-CCCACACGTTGCATCCCTCATCCTTTCTTCTCGCCGTCCTCCATTCTCCGTTCTGTCCAACTCCTCT--------CTGCGAAACCTAGCTCAGGTCTGAGAGT-------CTGAGATGCTCTGGGTGTGTGGATTTCTTTTTGCTACCCTGATGTCCCCACATCCAAGTCCTGACTCCTTTGAGCCATCCCTGGGGGTATCGGGCCACTTGACCATGGGAGCAGAGGCCAGGCTGTGACTCTGTGACCAACAAGATG-----TGTGATGTGTG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102495958 504 - 162156779 ATGGGACTGGATTCCAGAGCATCGGACCTGGCGGCAAGAACTGGCCGTCTCCATCCAAGAAACTGGGACCATGGCTGCC-GAGTCACGTATGGCCGAGGGCTGGCGGAGCCTGTCCCCCAGGGAGGGCTGAGTCCTGGAGGTAGTCGTTTTTGCGGAGAGGGCTGTGGGGCTCCTCCCACCTGCCCCCTTCTTTCCAGCACTTAGGTGGCACTTCCCTCTATTTTCACTCTTGGCGGCCG-CCCACACGTTGCATCCCTCATCCTTTCTTCTCGCCGTCCTCCATTCTCCATTCTGTGCAACTCCTCC--------CTGGGAAACCTAGCTCAGGTCTGAGAGTCTGAACCCCGAGATGCTCTGGGTGTGTAGATTTCCTTCTGCTACCCTGATGTCCCCACATCCAAGTCCTGACTCCTTTGAGCCATCCCTGGGGGTATCGGGCCACTTGACCACGGGAGCAGAGGCCAGGCtgtgactgtgtgaccaacaagatgtgtgatgtgatgtgtg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7722427 494 +  58131712 ATGGGACTGGATTCCAGAGCACGGGGCCTGGCTGCCAGAACCGGCCCTCTCCTTCCAAGGCACTGGGACCCTGGATGCCGGAGCCGCGTG-----------TGGTGGAGCCTGCCCCTCAGGGAGCTCTGAGTCCCGGAGGTGGTCGTTTTTAGGGAGGGGGCTATGGGGCTCGTCCCACCTACCCCCTTCTTTCCAGCACTTACATGGTGCTTCCCTCTATTTTCACTCTTGGCGGCCGCCCCACACATTGCATtcctcctc----cttctcgctgtcctccatcctccattccctccaactcctctccCAGCCCATGGGGTGCCTACCTCAGGTCAGAGAGTCTGAACCCTGAGATACGCTGGGTGTGTGGATTTCCTTCAGCTACCCTGATGTCCCCACTTCCAAGTCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCAGCCACTGGACCTCAGGAGCAGAGACGAGGCTGTGACTGTGTGACCATCAAGGTT-----TGTGATGTGTG
i chlSab2.chr26             T 32700 I 28
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=4294.000000
s hg38.chr15_KI270850v1_alt    262591 23 +    430880 CGTGAGCGAGCACACGAGTGTAA-------
s macFas5.chr7              106527377 30 - 171882078 TACAGGTGAGCACACGAGTGTGAGAGTGTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102496462 30 - 162156779 tacgggtgagcacacgagtgtgagagtgtA
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr26               7722921 28 +  58131712 I
e rheMac3.chr7              116089630 28 - 170124641 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=232541.000000
s hg38.chr15_KI270850v1_alt    262614 314 +    430880 AGAATGGCACCCAGACCTGAGCTAGGACA------------GAGGGAGCCTGGGGGCCACAGGCAAGCTCATTTCTTCTCCACACCCCTCCCC-----GCCCGACCCTGTCTAAACTAATGGGGTAGTGGTAGCCGCGAGGGCAGGGATGGGAGTGGCTGAAGCCTACTTCACTCCCAAAGATTTCTAAGGAAAATGGTTCTACTGCATCCTTTGGCTGGGCCTTGTTGACCCGTGACCCTCTTTCAAGAACATTCACTCTGATTTCCAGTGTGCC--GTCTCCACTGGCCACGTTCTCTAAGGAAGAACAATAGCATCTGTTTTTGTTTCCA
s rheMac3.chr7              116089658 325 - 170124641 AGAATGGCA-CCAAGCCTGGGCTAGGACAGAAGCAGCTGGGGAAGGAGCCTGGGGGCCATGAGCAATCTGATTTTTTATCCACCACCCCCCCC----CACCCTACCCAGTCTAAACCAATGTGATAGGGGTGGCTGCCGGGGAAGGGATGGGAGTGTCTGAAGCCCACTTCATTCCCAAAGATTTCTAAGGAAAAGCATTCTA---CATCCTCTGGCTTGGTCTTGTTGACCCATGGCCCTCTTTCAAGGACATTCACTCTGATTCCCAGTGTGCCCTGTTTCCACTGGCCACGTTCTCTAAGGAAGAACAATAGTATCTGTTTTTGTTTCCA
i rheMac3.chr7              I 28 C 0
s macFas5.chr7              106527407 327 - 171882078 AGAGTGGCACCCAGGCCTAAGCTAGGACAGAAGCAACTGGGGAAGGAGCCCGGGGGCCACAGGCAGTCTGATTTTTTCTCCACATCCCCACCC------CCTGACCCTGTCTAAACTAATGTGGTAGTGGCAGCTGCAGGGGCAGGGATGAGAGTGACTGAAGCCTACTTCACTCCCAAAGATTTCTAAGGAAGAGCATTCTACTGCAACCTTTGGCTTGGCCTTGTTGACCTATGACCCTCTTTCAACGACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCACGTTCTCTAAGGAAGAACAATAGCATCTGTTTTTGTGTCCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102496492 331 - 162156779 AGAGTGGCACTCAGGCCTGAGCTAGGACAGAAGCAACTGGGGAAGGAGTCCAGGGGCCACAGGCAGTCTGATTTTTTCTCCgcatctcccccc--accccctgaccctGTCCAAACTAATGGGGTAGTGGCAGCTGCAGGGGCAGGGATGGGAGTGACTGAGTCCTACTTCACTCCCAAAGATTTCTAAGGAAGAGCGTTCTACTGCAACCTTTGGCTTGGCCTTGTTGACCCATGATCCTCTTTCAAGGACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCATGTTCTCTAAGGTAGAACAATAGCATCTGTTTTTGTGTCCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7722949 328 +  58131712 AGAATGGCA-CCAAGCCTGGGCTAGGACAGAAGCAGCTGGGGAAGGAGCCTGGGGGCCATGAGCAATCTGATTTTTTATCCACCTCCCCCGCCCCGCCACCTTACCCAGTCTAAACCAATGTGGTAAGGGTGGCTGCCGGGGAAGGGATAGGAGTGTCTGAAGCCTACTTCACTCCCAAAGATTTCTAAGGAAAAGCATTCTG---CATCCTCTGGCTTGGACTTGTTGACCCATGGCCCTCTTTCAAGGACATTCACTCTGATTCCCAGTGTGCCCTGTTTACACTGGCCACGTTCTCTAAGGAA-AACAATAGCATATGTTTTTGTTTCCA
i chlSab2.chr26             I 28 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80015810 37738 +  99548318 M

a score=236427.000000
s hg38.chr15_KI270850v1_alt    262928 202 +    430880 AATGGCTGGAGAGTGGGGCTGTGGGACCAGCGCCCATATATAAAAATGAAGCAGGGATTGGGGCTTGCCCTGTGATGTGCTGTTGACCAAGTTAGAGGGGTAtaggcaagcagcaaagtattgggcaagatcactggactgggagtccagagatgctgcttcaccctggggctttaggcaagtccctttccctcccagagcc
s panTro4.chr15              80053566 202 +  99548318 AATGGCTGGAGAGTGGGGCTGTGGGACCAGCGCCCATATATAAAAATGAAGCAGGGATTGGGGCTTGCCCTGTGATGTGCTGTTGACCAAGTTAGAGGGGTATAGGCaagcagcaaagtattgggcaagatcactggactgggagtccagagatgctgcttcaccctggggctttaggcaagtccctttccctcccagagcc
i panTro4.chr15             M 37738 C 0
s rheMac3.chr7              116089983 202 - 170124641 AATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATAAACCAAAATGAGGCAGGGATTGGGGCTTGCCCTAGGATGTGGTAATGACCAACGGAGATGGGTAgaggcaagcagtgcagtattgggcaagagcactggactgggagtccagagatgctgcttcaccctgggacttcaggcaagtccctttccctcccagagcc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106527734 202 - 171882078 AATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATATACAAAAGCAAAGTAGGGATTGGGGCTTGCCCTATGACGTGCTGATGACCAAGTTACATGGGTAAAGGCAAGCAgcagagtattgggcaagagcgctggactgggagtccagagatgcttcttcaccctggggctttaggcaagtccctttccctcccagagcc
i macFas5.chr7              C 0 I 1587
s papAnu2.chr7              102496823 199 - 162156779 AATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATATACAAAAGCGAAGTAGGGATTGGGGCTTGCCCTATGACGTGCTGTTGACCAAGTTACATGGATAAAGGCAAGCAGCAGAGTACTGGGCAAGAACACTGGACTGGGAGTCCAGAGATG---CTTCACCCTGGGGCTTTAGGCAAGTCCCTTTCCCTCCCAGAGCC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7723277 194 +  58131712 AATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATAAACCAAAATGAGGCAGGGATTGGGGCTTGCCCTAGGATGTGGTAATGACCAACCGAGATGGGTAGAGGCAAGCAGCGTGGTATTGGCCAA--------GACTGGGAGTCCAGAGATGCTGCTTCACCCTTGgacttcaggcaagtccctttcccttccagagcc
i chlSab2.chr26             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I

a score=28508.000000
s hg38.chr15_KI270850v1_alt    263130 30 +    430880 tcagcatcccttttagcaaattatgacatt
s panTro4.chr15              80053768 30 +  99548318 tcagcatcccttttagcaaattatgacatt
i panTro4.chr15             C 0 C 0
s rheMac3.chr7              116090185 30 - 170124641 tcagcgtcctttctatcaaatgatttcttt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106529523 30 - 171882078 tcagtatcccttctatcaaatgatgatgtt
i macFas5.chr7              I 1587 C 0
s papAnu2.chr7              102497022 30 - 162156779 TCAGTATCCTTTCTATCAAATGATGATGTT
i papAnu2.chr7              C 0 I 756
s chlSab2.chr26               7723471 30 +  58131712 tcagcatcctttctatcaaatgatttcttt
i chlSab2.chr26             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I

a score=406082.000000
s hg38.chr15_KI270850v1_alt    263160 502 +    430880 ctgcctttctcctaggatggctgtggggatcaagggagacagtggccatagggatgctatgttaaccgcagaTGCGGCTGTAGGAGCACTTTGCTAACTGCCAACGTGAGTTCAGACTCTTCAGGCTATTTGGCACCCAGGTCTATGGTGAGGTGTGACATATGGGATGTAAAGTTTGATGCCTGCTCTGACTCCAGTCTTGCTAACACACACACGAAACCTTTGGCAAATCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCATACGTTGTGAGGAACTGGAGGGTAACTGGGTAAAGAGCTGCAGTGTGGGCAGAGGTGTAGTGTGGGTCACATTGAGGATAGCCACTGGCCAAAGCAGGGAACAGAGACAGAATGAGGAAGAGCTCTGTGGGGAGGGTGGGGCACAGGGTGGAGAACCTTCAAAGTCCAAAGAGTATGAC
s panTro4.chr15              80053798 502 +  99548318 ctgcctttctcctaggatggctgtggggatcaagggagacagtggccatagggatgctatgttaaccgcagaTGCGGCTGTAGGAGCACTTTCCTAACTGCCAACGTGAGTTCAGACTCTTCAGGCTATTTGGCACCCAGGTCTATGGTGAGGTGTGACATATGGGATGTAAAGTTTGATGCCTGCTCTGACTCCAGTCTTGCTAACACACACATGAAACCTTTTGCAAATCATGACCCTGCCTTGGGGAAAAGGGCTGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCATATGTGGCGAGCAACTGGAGGGTAACTGGGTAAAGAGCTGCAGTGTGGGCAGAGGTGTAGTGTGGGTCACATTGAGGATAGCCACTGGCCAAAGCAGGGAACGGGGACAGAATGAGGAAGAGCTCTGTGGGGAGGGTGGGGCACAGGGTGGAGAACCTTCAAAGTCCAAAGAGTATGAC
i panTro4.chr15             C 0 C 0
s rheMac3.chr7              116090215 499 - 170124641 ctgcctttctcccagggtggctgtggggatcaagggagacagtggtcatagggatactgtgttaactgtagatgtggccataGGAGCACTTTGCTAACTACCAACATGAGTTCAGACTCTTCAGGGTATTTGGAACCTAGGTCTGTGGTGAGGTGTGACATATGGGATGTAAGGTTTGATGTCTGCTCCAACTCTAGTCTTGCTAACACATGT--GAAACATTTGGCAAGTCATGATCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCTGGGGCATGACTGAGATAGGCTTATGTGATGAGGAATTGGAGGGTGTCTGGGTAAAGAGCTGCAGTGTGGGCAGAGGTTTAGTGTGGGACTCACTGAGGACACCCACTGGCCAAAGCAGGGAACAGAGACAGAAAGAGAAAGAGCTCTGTGGGGAGGGTGGGGCATAGGGTGGAGAA-CTTCAAAGTCCGAAGAGTATGAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106529553 498 - 171882078 ctgcctttctcctaggatggctgtggagatcccgggaggcagtggccatagggatgctatgttaactgcagaTGCAGCCATAGGAGCCCTTTGCTAACTGCCAACGTGAGTTCAGACTCTTCAAGCTATTTGGCACCCaggtgtgtggtgaggtgtgacatgtgggatgtaaggtttgaTGCCTGCTCCGACTCCAGTCTTGCTAACACACGC--TAAACATTTGACAAATCCTGACCTTACCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGGCTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCTTATGTGGTGAGGAATTGGAGGATAACTGGGTAAAAAGCTGC--CATGGGCAGAGGTGTAGTGTGGGTCGCATCGAGGATAGCCCCTGGCCAAAGCAGGGAACACAGACAGAATGAGGAAGAGCTCTGTGGGGAAGGTGGGGCGTAGGGTGGAGAACCTTCAAAGTCTGAAGAGTGTGAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7723501 499 +  58131712 ctgcctttctcccagggtggctgtggggattaagggagacagtggtcatagggatgctgtgttaactgcagaTGCGGCTGTAGGAGCACTTTGCTAACTACCAACGTGAGTTGAGACTCTTCAGGGTATTTGGCACCCAGGTCTGTGGTGAGGTGTGACATATGGGATGTAAGGTTTGATGCCTGCTCCAACTCTAGTCTTACTAATGCAAGC--AAAACATTTGGCAAGTCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGGAGTCCAGGGTATGACTGAGATAGGCTTATGTGACGAGGAATTGGAGGGTATCTGGGTAAAGAGCTGCAGTGTGGACAGAGGTTTAGTGTGGGACTCACTGAGGACAGCCGCTGGCCAAAGCAGGGAACAGAGACAGAATGAGAAAGAGCTCTGTGGGGAGGGTGGGGCATAGGGTGGAGAA-CTTCAAAGTCCGAAGAGTATGAC
i chlSab2.chr26             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e papAnu2.chr7              102497052 756 - 162156779 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I

a score=451637.000000
s hg38.chr15_KI270850v1_alt    263662 402 +    430880 TTGTTGGGATTCAACGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGGAGAAATGACAGCCGGACATTAGTGAGCAAGCCCTGTCTCCCTGAGCAGGATGGGTGGTCCTCTGAGCACGCCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGCGGGTGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCACGCCCCAGATCCATGCGGCACGTGCCGGCTGGTGAGGGTGTTGGGCACCGGGAGGTGGCGGAGAGGGCGACGTATGCGTGTTGTTTGTGGGCA--TGTGTT-AGAGTGTGCATGCGGGCCGTGGGGCCTCACAGCATGTGTGTGCACAATCTGGCGTGTGC----GTGTGTCCGCCACC
s panTro4.chr15              80054300 402 +  99548318 TTG-TGGGATTCAACGCTGTAGGCAGTAGGGAGTCATGGAAGGCTCTTAGGTGGAGAAATGACATCTGGACATTAGTGAGCAAGCCCTGTCTCCCTGAGCAGCATGGGTGGTCCTCTGAGCACGCCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGCGGGTGAGCATCTGTGTTGTGACTCTGCCCACGCATGTACTTCAGTGTGCCGAGTGGCTGCACGCCCCAGATCCATGCGGCACGTGCTGGCCGGTGGGAGTGCTGGGCATTGGGAGGTGGCGGGGAGGGCGACGTATGCGTGTTGTTTGTGGGCA--TGTGTTAAGAGTGTGCATGCGGGCTGTGGGGCCTCACAGCATGTGTGTGCACAATCTGGCGTGTGC----GTGTGTCCGCCACC
i panTro4.chr15             C 0 M 5317
s rheMac3.chr7              116090714 403 - 170124641 TTGTTGGGGCTCAATGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTAGAGAAATGGCAGCTGAACATTAGCGAGCAAGCGCTGTCTCCATGAGCAGCATGGATGGTCCTCTGAGCATGCCA-GCATGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGTGGGTGAGCTTCTGTGTTGTGACTCTGCCCATGTGTGTGCTTCAGTGTGCCGAGTGGCTGCACACCCCAGATCTGTGCTGCACGTGCCAGCCAGTGAGGGTGCTGGGCACTGGGAGGTGGCAGGGAAGGAGGCGTATGCGTG----TTGTGGGCATGTGTGTT-AGCATGTGCATGCCAACAGTGGGGCCTCACAGCATGTGTGTGCACACCCCGGCAAGTGCATGTGTGTGTCCCCCAAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106530051 393 - 171882078 TTGTTGGGGTTCAGTGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGGAGAAATGACAGCTGGACATTGGTGAGCAAGCCCTGTCTCCATGAGCAGCGTGGGTGGTCCTCTGAGCACACCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGCGGGCGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCATGTCCCAGATCCTTGTGGCACAGGCCGGCCAATGAGGGTGCTG-------------GGCGGGGAAGGCAGCGTATGCGTGTTTTTTGTGGGCATGTGTGTT-AGTGTGTGCATGCAGGCAGTGGGGCCTCACAGCATGTGTGTGCACACTCCGGCGTGTGC--GTGTGTGTCCCCCACC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102497808 391 - 162156779 TTGTTGGGGTT-AATGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTCAGGTGGAGAAATGACAGCTGGACATTAGTGAGCAAGCCCCGTCTCCATGAGCAGCATGGGTGGTCCTCTGAGCACATCAGGCACGAGTGTGCAGGGAGCTGGTGGAAATGCCTCTGTGTGCGGGCGAGCATCTGTGTTGTGAC-CTGCCCACGCATGTGCTTCAGTGTGCCGAGTAGCTGCATGTCCCAGATCCTTGTGGCACAGGCTGGCCAGTGAGGGTGCTG-------------GGCGGGGAAGGCAGCGTATGCGTGTTTTTTGTGGGCATGTGTGTT-AGCGTGTGCATGCAGGCCGTGGGGCCTCacagcatgtgtgtgcacactccggcgtgtgc--gtgtgtgtcccCCACC
i papAnu2.chr7              I 756 C 0
s chlSab2.chr26               7724000 403 +  58131712 TTGTTGGGGCTCAAAGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTAGAGAAATGGCAGCTGAACATTAGCAAGCAAGCACTGTCTCCATGAGCAGCATGGATGGTCCTCTGAGCATGCCA-GCATGGGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGTGGGTGAGCTTCTGTGTTGTGACTCTGCCCATGTGTGTGCTTCAGTGTGCCAAGTGGCTGCACGCCCCAGATCTGTGCTGCACGTGCCAGCCAGTGAGGATGCTGGGCACTGGGAGGTGGCAGGGAAGGAGGCGTATGCGTG----TTGTGGGTATGTGTGTT-AGTGTGGCCATGCCAGCAGTGGGGCCTCATAGCATGTGTGTGCGCACCCCAGCATGTGCGTGTGTGTGTCCCCCAAC
i chlSab2.chr26             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I

a score=1118709.000000
s hg38.chr15_KI270850v1_alt    264064 1489 +    430880 CCCAGGCCTGCCCCACCCATGCATGGGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCATCAGCCATGGTAGGTACATGCCTCACTGCCTGCTGCATGAATGGTCTGCCCGCCCCGCTGCCCCAGCTCCACACAGGGGGCATACCTGGAGCCTCAGAGCCAGGCTGCCTGCCCCTCCCTTCTAGAGCTGCAGCCTTGCTCTTTCCTCTTTCTGTCCTTGTGCTGCTGGCTGTCTCACTTCCC-TCCCTGCCAGCCACAGGACTCAGTGCCACTGCTCAAGGTCTCCATGGCTGAGCCTGGGGGCTCTTACAACAGGCTCCATGCCGAAGGTGGCAGA-----------TGTGGAACCATCAGAGAGGGCACAGAGCTCATGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGGGTTGTGTGGGGGGCTGGACTC--AGGCGGCCAGAGGCCTGGGCACATCATCCTGGGCACGCCGTACCTGTCATGCAGTC-TGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGTGCCGAGAGCCAAATCCACTGCAGATTAGGGGTGATAGTCACGGTCCCACGTCCTCTATCTGTCAGCAATCCAGTGGTGATCTAGGATAAAAGCCTGAGAGTCCTATACACGCGGTCATCCCACAACACACTTCATAGGCCATGCAAGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATCACAGCTGCTAGCATGTGACTGAAGGCTGGGTCCCTGGCCAGCACTACTGAAGCACTACTGCCAGCCAGCAGGCTCACGGACCTTGGCCTGTTGCTCCTAGGGGTCACCTGTGCTATTCAGCCAAGGAGACCACAGTGCTTGCTGGCCCAGCTGAGCTCCGCCTAGCGAGCCCACCTGCCTTTCCTGCCGCGGAGTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAG-----CCCCCCGCCAACCAGTTGAGGTTCCCCTCTT-AGACTTATAAGTCTATGGGCAGTGGCATCTAGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGTGGACCCTGGGCTTTCTGACTGCCCAGAGAGGGGCCTCTGGCGCTCACTCCAGCCAGCCAT-CCCTTACAGCTTCACCATTTTGGTTCAAGCAGTGTTCCTTCTG--TCAGGCTTGGTGGCTGTTGGGTGGGGCTCCCCAAGCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGATGGGGTGACCACAGAAGAGGGAAGCCG-GGGGAGTTGAGCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGCCATGAGAGAGGCCAGTGTGTGTGGGGTGGGGA-GGACCGCCACAGCCCCCAGGCACTACCTATGAAGCTCTAGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACC-TTGCCACGCCCACACCTACGCCTTCCCCTTC
s rheMac3.chr7              116091117 1479 - 170124641 CCCAGGCCTGCCCCACCCATGCATATGAGCTGCCATGTTGATTTGATGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCATCAGCCGTGGTAGGTACATGCCTCGCCGCCTGCTGCATGAATGGTGTTCCCGCCCCACTGCACCAGCTCCACAC-GGGGGCACACCTGGGACCTCAGATCCAGGCTCCCTGCCCCTCCTTTCTGGAGCTGCAGATTTGCTCTTTCCTCTTTCTGTCCTCGTGCTG-TGGCTCTCTCACCTCCCTTCCCTGTGAGCCATGGGACTCAGCACCACTGCCCATGGCCTCCATGGCTGAGCCTGGGTGCTCTCGGAACAGGCTCCATGCCCAAGCTGGCAGACATGGGTGCTCTCTGGAGCCATCAGAGAGGGCATAGAGCCCATGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGCAT--TGTGTGGGGCTGGACTCTGAGGAGGCCAGAGGTCTAGGAACGTCATCCTGGGCACACCATACCTGTCATGCAGTC-TGAGTCATGCTGCCAGGGCAGGGCATCCAGCTCCCAGCCTGGGAGTGCCGAGAGCCGAATCCACTGCAGAGCAGCGGTGATAGTCGGGGTCCCACCTCCTCTATCTGTTGGCAATCCAGTGATGATCTAGGATAAAA-TCTTAAAGTCCCATACACATGGTCATCCCACAACACACTTCACAGGCCAGGAAGGGACACACAGCCCCCTTCCCATCCTCCCAGGTACCATCATAGCTGCTAGTGTGTGACCGAAGGCAGGGTCCCTGGC---CCCCGCTGAAGCATTACCACAGGCCAGCAGGCTCACACAACTTGGCCTGTTGCTTCTAGGGGTCTCCTGTGCTATTCAGCCAAGGGGATCACAGTGCCTGCTGGCCCAGCTGACCTCCGCCTAGTGAACACACCTGCCTCTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCTCAGCAGGAAGGGCCCAGCCTCATCTACGAAACCTGTAGCATTCCCACCCAGCAACCAGCTGGGGCTCCCCTCTTAAGACTTATAAGTCTATGGCCAGTGGCATCCAGCTACCTGCCCTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGACCCTGGTCTTTCTGACCACTC--AGAGGGGCCTCTGGCACTCACTCCAGCCATCCAT-CCCTTATAGCTTCACCATTTTGGTTCAAGCAGTGTTCCTTATC----AGGCCAGGTGGCAGTTGGGTGGGGGTCCCCAAGCAAGAGGTGGCCCT-GGCCAGTGGGTTAGAAGACAGGGTGACCAGAGAAGACAGAAGCCCAAGGGGGCTGAGCATTGGTCTGAACTGTGGGTGCACTGCCTGTGTGCCAT---------------------GGTGGGGA-GGGCTGCCACAGCCCCCAGGCACTACCTGTGAAGCTCTGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCTGGCCCCTCTTTTCCAGGAACCTTTGGCACACCCACACCTGCACCCTCCCCTCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              106530444 1482 - 171882078 CTCAGG-CTGCCCCA-CCATGCATGTGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCGGTGTTCCCTGAGGAGCGTCAGCCTTGGTAGGTACATGCTTTGCTGCCTGCTGCATGAAAGGTCTGCCTGCCCCGCTGCCCCAGCCCCACATGGGGGGCCTACCTGGGACCTCAGAGCCAGGCTCCCTGCCCCTCCCTTCTGGAGCTGCAGACTTGCTCTTTGCTCTTTCTGTCTTTGTGCTGCTGGCTGTCTCACTTCTC-TCCCTGCGAGCCATGGGACTCAGTGTCACTGCTCCAGGTCTCCATGGCTGAGCCTGGGGGCTCTTAGAACAGGCTCCATGCCCAAGCTGGCAGA-----------TGTGGAGCCATCAGAGAGGACACAGAGCTCGTGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGAATCTGAGGCGGTCAGAGGTCTAGGCACATCATCCTGGGCACGCTGTACCTGTCATGCAGTC-TGGGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGGCTGGGAGTGCTGAGAGCCAAATCCACTGCAGATTAAGGATGATAGTTAGGGTCCCACATCCTCCAACTGTCAGCAATCCAGTGGTGATCGAGGATAAAAGCCTGAGAGTCCCATACACACGGTCATCCCACAACACACTTCACAGACCGGGCAAGGACACACAGCCCCGTTCCCTCCCTCCCAGGTACCATCATAGCTGCTCGTGTG-GACTGAAGACAGGGTCCCTGGC---CCCCGCTGAAGCACTACCGCCGACCAGCAGGCTCACTCACCTTGGCCTGTTGCTCCTAGGGGTCTCCTGTGCTATTCATCCAAGGAGACCACAGTGCCTCCTGGCCCAGCCAAATCCTGCCTAGCGAGCCCACCTGCCTGTCCTGCCACGGACTCTCCCTCTTCTGCTTTTCCCATCATAAAGGGCCCAGCGTCACCTATGCAACCTGCAG-----CCCCCTGCCTACCAGTTGAGGCTCCCCTTTT-GGGCTTATAACTGTATGGCCGGTGGCATCCAGCTACCTGCCCTCCCAGCCTTCCCCAGGGT-CCTTCAGAGGACCCTGAGCTTTCTGCCCACCC--AGAGGGACCTCTGGTGCTCACTCCAGCCAGCCATCCCCTTATAGCTTCACTATTTTGTTTCAAGCAGTGTTCCTTCTCTATGAGGAGTGGTGGCTGTTGGGTGGGGCTCCCCAAGCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGAC--GGTGACCAGGGAAGAGGGAAGTCC-TGGGGGCTG-GCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGCCATGAGAGAGGTCAGCGTGTGTGGGGTGGGGA-GGGCCGCCGCAGCCCCCGGGCACTTCCTATGAAGCTCTGGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCTCTCTTTTCCAGGAACC-TTGCCATGCCCACACTTACACTCTCCCCTTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102498199 1485 - 162156779 CTCAGG-CTGCCCCA-CCATGCGTGTGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCGGTGTTGCCTGAGGAGCGTCAGCCTTGGTAGGTACATGCTTTGCTGCCTGCTGCATGAAAGGTCTGCCTGCCCCGCTGCCCCAGCCCCACATGGGGGGCATACCTGGGGACTCAGAGCCaggctccctgcccctcccttctGGAGCTGCAGACTTGCTCTTTGCTCTTTCTGTCCTTGTGCTGCTGGCTGTCTCACCTCCC-TCGCCGCGAGCCATGGGACTCAGTGTCACTGCTCAAGGCCTCCATGGCTGAGCCTGGGGGCTCTTAGAACAGGCTCCATGCCCAAACTGGCAGA-----------TGTGGAGCCATCAGAGAGGACACAGAGCTTGTGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGAATCTGAGGCGGTCAGAGGTCTAGGCACATCATCCTGGGCACGCTGTACCTGTCATGCAGTCTTGGGTCATGCTGCCAGGGCAGGGTATCCAGCTCCCAG-CTGGGAGTGCCGAGAGCCAAATCTACTGCAGATTCAGGGTGATAGTTAGGGTCCCACGTCCTCCAACTGTCAGCAATCCAGTGGTGGTCTAGGATAAAAGCCTGAGAGTCCTATATACACAGTCATCCAACAACACACTTCACAGACCAGGCAGGGACACAcagcccccttccctccctcccaggtaCCATCATAGCTGCTAGTGTG-GACTGAAGACAGGGCCTGTGGC---CCCCGCTGAAGCACTACCGCCGACCAGCAGGCTCACTCACCttggcctgttgctcctagggGTCGCCTGTGCTATTCAGCCAAGGAGACCACAGTGCCTGCTGGCCCAGCCGAGCTCCGCCTAGCGAGCCCACCTGCCTGTCCTGCCACGGactcttcctcttctgcttttccCATCATAAAGGGCCCAGCCTCACCTATGCAACCTGCAG-----CCCCCTGCCTACCAGTTGAGTCTCCCCTTTT-GGACTTATAACTGTATGGCCGGTGGCATCAGGCTACCTGCCCTCCCAGCCTTCCCCAGGGT-CCTTCAGAGGACCCTGAGCTTTCTGCCCACCC--AGAGGGGCCTCTGGTGCTCACTCCAGCCAGCCATCCCCTTATAGCTTCACTATTTTGTTTCAAGCAGTGTTCCTTCTCTATCAGGCCTGGTGGCTGTTGAGTGGCGCTCCCCAAGCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAGTCC-TGGGGGCTG-GCATTGGTCTGAACTGTGGGTGGACTGCCTGTGTGCCATGAGAGAGGTCAGCGTGTGTGGCGTGGGGA-GGGCCGCCACAGCCCCCGGGCACTACCTATGAAGTTCTGGCTTCTCCCTCCatcttcctcccctttcccttccagcCTCTCTTTTCCAGGAACC-TTGCCATGCCCACACTTACACCCTCCCCTTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr26               7724403 1500 +  58131712 CCCAGGCCTGCCCCACCCATGCATGTGAGCTGCCATGTTGATTTGATGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCATCAGCCATGGTAGGTACATGGCTTGCCGCCTGCTGCATGAATGGTGTTCCCGCCCCACTGCACCAGCTCCACAC-GGGGGCACACCTGGGACCTCAGATCCAGGATCCCTGCCCCTCCTTTCTGGAGCTGCAGATTTGCTCTTTCCTCTTTCTGTCCTCATGCTG-TGGCTCTGTCACCTCCCTTCCCTGTGAGCCATGGGACTCAGCACCACTGCCCATGGCCTCCATGGCTGAGCCTGGGTGCTCTTGGAACAGGCTCCATGCCCAAACTGGCAGACATGGGTGCTCTCTGGAGCCATCAGAGAGGGCATAGAGCTCATGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGCGT--TGTGTGGGGCTGGACTCTGAGGAGGCCAGAGGTCTAGGAACGTCATCCTGGACACGCCATACCGGTCGTGCAGTC-TGAGTCATGCTGCCAGGGCAGGGCATCCAGCTCCCAGCCTGGGAGTGCCGAGAGCCGAATCCACTGCAGAGCAGGGGTGATAGTCAGGGTCCCACCTCCTCTATCTGTCAGCAATCCAGTGATGATCTAGGATAAAACCTTAAGAGTCCCATACACATGGTCATCCCACAACACACCTCACAGGCCAGGCAGGGACACACAGCCCACTTCCCATCCTCCCGGGTACCATCATAGCTGCTAGCATGTGACCAAAGGCAGGGTCCCTGGC---CCCCGCTGAAGCATTACCACAGGCCAGCGGGCTCACACAACTTGGCCTGTTGCTTCTAGGGGTCTCCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGACCTCCGCCTAGCGAGCCCACCTGCCTCTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTACGAAACTTGTAGCATTCCCACCTGGCAACCAGCTGAGGCTCCCCTCTTAAGACTTACAAGTCTATGGCCAGTGGCATCCAGCTACCTGCCCTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGACCCTGGTCTTTCTGACCACCC--AGAGGGGCCTCTGGCACACACTCCAGCCATCCAT-CCCTTATAGCTTCACCATTTTGGTTCAAGCAGTGTTCCTTATC----AGGCCAGGTGGCAGTTGGGTGGGGCTCCCCAAGCAAGAGGTAGCCCT-GGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCAAGGGGGCTGAGCATTGGTCTGAACTGTGGGTGCACTGCCTGGGTGCCATGGGTGAGGCCAGCGTGTGTGGGCTGGGGAGGGGCCACCGCAGTCCACAGGCACTACCTGTGAAGCTCCGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCC--CTTTTCCAGGAACCTTTGCCACACCCGCACCTGCGCCCTCCCCTCC
i chlSab2.chr26             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e ponAbe2.chr15              80112140    0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=9792.000000
s hg38.chr15_KI270850v1_alt    265553 9 +    430880 CCGGCTCTC
s nomLeu3.chr6               18862028 9 - 121039945 CCAGCTCTT
i nomLeu3.chr6              I 10347 C 0
s rheMac3.chr7              116092596 9 - 170124641 CTGGCCCTC
i rheMac3.chr7              C 0 I 3315
s macFas5.chr7              106531926 9 - 171882078 CCGGCCCTC
i macFas5.chr7              C 0 I 3165
s papAnu2.chr7              102499684 9 - 162156779 CCAGCCCTC
i papAnu2.chr7              C 0 I 23523
s chlSab2.chr26               7725903 9 +  58131712 CCAGCCCTC
i chlSab2.chr26             C 0 I 1556
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556 0 -  40214260 I
e ponAbe2.chr15              80112140 0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=3015.000000
s hg38.chr15_KI270850v1_alt    265562 40 +    430880 AGATGATGGTGGTGTTTATCTCCCTGTTCTTGGGAGCCCA
s nomLeu3.chr6               18862037 40 - 121039945 CGATGATGGTGATGTTTATCTCCCTGTTCTCGGCAGCCCG
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac3.chr7              116092605 3315 - 170124641 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=56058.000000
s hg38.chr15_KI270850v1_alt    265602 317 +    430880 AAAAGAATGGCATGCAGGGGTTGCTGC--------------------------------------CCATGCCTGGGTGCTCCTGGGGAGTCCTGCATTACAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCGTGGGGAGAACCCTCCCTGTCCTCTCCTGGTGCAGCCTCCACGCTATCAGTGAGGCTCACCTCACAAAGATCTTCAGAGAGAGGGAGGGGGGGTGGGAATCTGAGCACAGTGTGAGCCTCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGGGCTCTACTCACCACCCTGCTCGTCAGC-ACACCCAAGCTCCTGGGCTATTGGGGCTCCTAGAGTGG
s nomLeu3.chr6               18862077 355 - 121039945 AAAAGAATGGCATGCAGCCTCTCCTGCTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCAGCCAAGCCTGGGTGCTCCTGGGGAGTCCTGCATTACAGAAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCATGGGGAGAACCCCCCCTGTCCTCTCCTGGTGCAGGCTCCACGCTATCAGTGAGGCTCACCTCATAAAGATCTTCAGAGAGAGGGA-GGGGGGTGGGAATCTGAGCACAGTGGGAGCCTCCCCTGCTCCTGACTGCCCACCCCACCTGAGGGCTCAACCCACCACCCTGCTTGTCAGCAACACCCCAGCTCCTGTGGGATTGGGGCTCCTAGAGCAG
i nomLeu3.chr6              C 0 I 45709
s rheMac3.chr7              116095920 278 - 170124641 AAAAGAATGGCATGCAGGGTTTGGTGG--------------------------------------CCAAGCCTGGGTGCTCCTGGGT-GTCCTGCGTTACAGGAAGCAGCTGCAGGATCTTCAGTGCAGTGGGGTTGTCACGGGGAGAACCCTCCCTGGCCTGTCCCACTGCAGGCTTCATGCTGT-GGTG--------------AAAATCTTCGGAGAGAGGGA-----GGCGGGGCTCTGAGTACACTGTGAGCCTCCCCTGCTCCAGCCTGCCCACCCCACCTGAGGGCTCTACTCACCACCCT-------------------GCTCCTGGGGGGCTGGGGCCCCTGAAGCGG
i rheMac3.chr7              I 3315 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e macFas5.chr7              106531935 3165 - 171882078 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=6565.000000
s hg38.chr15_KI270850v1_alt    265919 118 +    430880 GCTCATCAGCAGGGTTCTGGGCAATGGTCAG-AATTTGCCATGCCCCTCCTTGTGGTCTCCCACAAGCTGCAACACC-TGCCCCGCAGCTCCTGCAGGTTCACCTGGAGGAAGGGGTGTT
s rheMac3.chr7              116096198 117 - 170124641 GCTCATTAACAGGGTTCTGGGCAGCAGGGAGGAATTTGTCATGCCCCTC---GTGGTCGCCCACAACCGGCAACACCATATCTTGCAGCTCCAGCAGCTTCACCTGAAGGGAGGGGTGCT
i rheMac3.chr7              C 0 I 48
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e macFas5.chr7              106531935 3165 - 171882078 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=0.000000
s hg38.chr15_KI270850v1_alt    266037 51 +    430880 AGCTGCCATGCCGGTGCCAGCACGCACGTTCACACCCACCCCCACCCTCCC
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac3.chr7              116096315 48 - 170124641 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=10971.000000
s hg38.chr15_KI270850v1_alt    266088 217 +    430880 CCACCGAGATGTTGCACACCCT--ACCTTCATCTCCTCCTGGTCCTGGGCCAGCCTGACGATGTCCTCCTCTCCCAGTGCTGCGTCTCTGACACTGCCCCCTGGCT------------GATGTACTTTCCTGCAGGAGGACATGGCTCAGATGCTGGGGCCCCTCAGACGGCCTGGCAGCTCCCCCCAGCGGTGCCCTAGCCTCTCACTCCCT-ATGGTGTCTGTCTGTCCT
s rheMac3.chr7              116096363 230 - 170124641 CCGCAGAGATGTTGCACACTCTCTACCTTCATCTCCTCCTCGTTCTGGGCCAGCCTGCTGGCTTCCTCCTC--CTGGTGCCGCGTGTTTGGCTCTGCCCTCTGGCTCTCATATACTGTGATGTGCTCTCCTGTGAGAGGACACGGCTCACACACTGGGGCCCCTCTGAAGGCCCTGCAGCTCCCCGTGCCCGTGCCCTGGCCTCCTGCTTACTCATGCCATCTGTCGCTCCA
i rheMac3.chr7              I 48 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e macFas5.chr7              106531935 3165 - 171882078 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=3602.000000
s hg38.chr15_KI270850v1_alt    266305 17 +    430880 GAGAGGTGGATGAATTG
s rheMac3.chr7              116096593 17 - 170124641 GAGAGCTGGATGAATCC
i rheMac3.chr7              C 0 C 0
s chlSab2.chr26               7727468 17 +  58131712 GAGAGATGGATGAATCC
i chlSab2.chr26             I 1556 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e macFas5.chr7              106531935 3165 - 171882078 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e ponAbe2.chr15              80112140  0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=176222.000000
s hg38.chr15_KI270850v1_alt    266322 470 +    430880 AAGCTCTAGTTTCTCTACCCGCTCCTTCAGGTCCACCTTCTCCT--------TCCATAAAGTCGCTGTGGAGCCAAAATAATGGGGTCACATGTCAGGAGTCACCTGCCTTGTCCTGCCCCCCCGCCCCCCTTGTTGGCCCATGCCAGGACCTACTCACCTGCAGCTTCTCCATGGCCCCCTGCAGGGCCCGGTGGGTCTCCCCAAACACAGACTCACCCCCACTCTCTGGGGCTGGGGCCGCTACCTCTGGCTTTTTCTGGGACGAGGCCACTGGGTGAGCCAGGGGCTGGCAGCACACCCTT------------------------------TGTTCCTCCTGGGCATTGGCTCCAGCGGAGTTGAAAAATGCCACCTGAAGACAAGAGGTGAGTATTCTTGTAGGGGTATACACATAACAACTGGGGCAGGCAGATGGAGCATAGCCCCTTCATTTCGGGCCTCACAGAGTGCACCTGTTGGTCACAGGTGAAATGGTGTCTGAC
s rheMac3.chr7              116096610 501 - 170124641 AAGCTCTAGATTCTCCACCTGCTGCTTCCCGTCCACCTTCTCCCTCGGGAGGTCCATAAAGCCACTCTGGAGCCAAAATAATAGGGTCACATCACAGGAGTGACC-----TGTCCTGCCCCACCCCCACTTTTCTTGGCCCATGCCAGGACTCGCTCACCTTCAGCTTCTCCATGGCCCCCTGCAGGGCCCGGTAGGTCTCCCCACACACAAACTCACCCCCAGTCCCTGGGGCTGGGGCCTCT-CCTCTGGCTCCTTCCAGGCCGAGGCCACCAGGTGAGCCAGGTGCAGGCAGCACAGCCTTCACACCTTCCGCTGCCCACATAGCCGTGCCTGCTCCTCCTGGGCACTGGCTCCAGCGGAGTTGAAAAATGCCACTTGAAGGCAAGAGGTGAGTATCCTTGTAGGGGCATACACAGAACAAATGGGGCAGGGAGGTGGAGCACAGTCCCTTCCCTGGGGT-CTCAGAGAGTGCACCTGTTGGTCACAGGTGAAGTGGTGTCTGAC
i rheMac3.chr7              C 0 N 0
s macFas5.chr7              106535100 403 - 171882078 AAGCTCTAGTTTCTCCACATGCTCCTTCATGTCCACCTTCTCC---------TCCATAAAGTCGCCCTGAAGCCAAAATAATGTGGTCACATCTCAGGAACCACC-----TGCCTTGCCCCACCCACACCGTT--------------------------------------CATGGCCCCCTGCAGGGCTCGGTGGGTCTCCCCACACACAGACTCACCCCCAGTCCCTGAGG----------T-CCTCTG----------GGATGAAGCCACCGGTTGAGCCAGGGGCTGGCAGCACACCCTT------------------------------TGGTATTCCTGGGCATTGGCTCCAGCGTCGTTCAAAAATGCCACCTGAAGGCAAGAGGTGACTATTCTTGTAGGGACATACACAGAACAACCGGGGCAGGGAGATGGAGCGCAGCCACTTCCCTTGGGG-CTCAGAGTGAGCACCTGTTGGTCACA-GTGAAATGGTGTTTGAC
i macFas5.chr7              I 3165 C 0
s chlSab2.chr26               7727485 503 +  58131712 AAGCTCTAGTTTCTCCACCTGCTGCTTCCCGTCCACCTTCTCCCTCGGGAGGGCGATAAAGCCACTCTGGAACCAAAATAATAGGGTCACATCATGGGAGTGACC-----TGTCCTGCCCCACCCCCACTTTTCTTGGCCCATGCCAGGACTCACTCACCTTCACCTTCTCCATGGCCTCCTACAGGGCCCGGTAGCTCTCCCCACACACAAACTCACCCCCAGTCCCTGGGGCCGGGGCCTCTGCCTCTGGCTCCTTCCAGGCCGAGGCCACCAGGTGAGCCAGGTGCAGGCAGCACAGCCTTCACACCTTCCGCTGCCCACATAGCTGTGCCTGCTCCTCCTGGAAACTGGCTCCAGCGGAGTTGAAAAATGCCACTTGAAGGCAAGAGCTGAGTATTCTTGTAGGGGCATACACAGAACAAATGGGGCTGGGAGGTGGAGCACAGTCCCTTCCCTTGGGGCCTCAGAGAGTGCACCTGTGGGTCACAGGTGAAGTGGTGTCTGAC
i chlSab2.chr26             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=38674.000000
s hg38.chr15_KI270850v1_alt    266792 180 +    430880 CACTGGCTCCCAGAAGCAGAGAAAGTCCACAGAAGTCAGAAGGCGGGGAAACCAAGAACATAAGGGGGTTTCGGAGGGACCACAGAGGAAGGTGGCAAAGTAGGGGCAGGGAAAGTCAGGCTCACCATGGCCTCCCGGCTCTCCAGGTCCCCTGGGATGTTCGGCATGGGCCGAAGCGC---C
s macFas5.chr7              106535503 182 - 171882078 CACTGGCTCCCAGAAGGAGTGAAAGTCCACAGAAATCAGAAGGCAGGGAAACCAAGAACATAAGGGGATCTGGGAGGGACCACCAAGGAAGGTGACAAAGTAGGGGCAGGGAAAGTCAGGCTCACC-TGACCTCCCGGCTCTCCCGGTTCTCTGGGATGTTCTGCATGGGCTGAGGTGCCTCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7727988 183 +  58131712 CACTGGCTCCCGGAAGGGGTGAAGGTCCAGAGAAATCAGAAGGCGGGGAAAGCAAGAGCATAACGGGGTCTTGGAGGGACCACAGAGGAAGGTGGCAAAGCGGGCACAGGGAAAGTCAGACTCACCATGGCCTCCTGGCTCTCCAGGTCCCCTGGGACACTAGGCATAGGCCGAGGCACCTTC
i chlSab2.chr26             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e ponAbe2.chr15              80112140   0 +  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=18135.000000
s hg38.chr15_KI270850v1_alt    266972 47 +    430880 TCCTGCTCACTGTCCAGATGTCCTCCTCCATCTCCTGTGGGGG-GTGG
s ponAbe2.chr15              19065058 45 -  99152023 TCCTCCTCACTGT-CAGATGTTCTCCT-CATCTCATGTGGGGG-GTGG
i ponAbe2.chr15             n 0 n 0
s macFas5.chr7              106535685 47 - 171882078 TCCTCCTCACTGCCCAGATGTCCTCCTCCATCTCTTCTAGGGA-GTGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7728171 48 +  58131712 TCCTCCTCAGTGTCCAGATGTCCTCCTCCATCTCCTGTGGGGAGGTGG
i chlSab2.chr26             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=68151.000000
s hg38.chr15_KI270850v1_alt    267019 306 +    430880 CCAGAGGGGTCCTCAGACAACCCAACAAGGGAGGTACAGTGGGCCCGCCTCTGCCCCCACACTCACTGTGTAACCTTGAGCCAGCCCCTCCCCAGAGGGGAATGA---GCTGttctttattttgaattttaagaaccaagatcttgctatattgcccaggcacagtcccactaccgattggtgcaggaattctgacctgctccctttctgacctgggccagttctcccatccttaggcaagccgatga---cctgttcccaggaggtcaccatactgatactgaacttagtgcggacaccttgtcggcataA
s macFas5.chr7              106535732 309 - 171882078 CCAGAAGGGTCCTCAGACAACCCAACAAGGGAAGTACTGGGGGTCCACCTCTGCCCCCACCCTCACTGTGTAGCCCTGAGCCAGCCCATTCCCAGAGGGGAATGA---GCTATTCTGTATTATTACTTTTAAGAACCAAGATCTTGCTATACTGCCcaggcacagtcccactaccgattggtgcgggagacctgacctgctccctttctgacctgggccagttctcccatccttaggcaacctgatggcctcctgctcccaggaggtcaccatattgataccgaacttagcgcggacacccggtcggcataA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7728219 310 +  58131712 CCAGAGGGGTCCTCAGAAAACCCAACAAGGGAAGTACCGTGGGCCCACCTCTGTCCCCACCCTCACTGTGTAACCCTGAGCCAGCCCCTCCCCAGAGGGGAATGACCTGCTGTTCTTTAGT-TTTCCTATAAGATCCAAGATCTT-CTATATTGCCcaggcacagtcacactaccagttggtgcaggagttctgacctgctccctttctgatctgggccagttcactcatccttaggcaacctggtggccgcctgctcctgggaggtcatcatattgatgccgaacttagtacagacacccggttggcataa
i chlSab2.chr26             C 0 n 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e ponAbe2.chr15              19065103   0 -  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=420.000000
s hg38.chr15_KI270850v1_alt    267325 7 +    430880 TGACCGA
s macFas5.chr7              106536041 7 - 171882078 TGACCAG
i macFas5.chr7              C 0 I 86169
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556 0 -  40214260 I
e chlSab2.chr26               7728529 0 +  58131712 I
e papAnu2.chr7              102499693 23523 - 162156779 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e ponAbe2.chr15              19065103 0 -  99152023 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=176256.000000
s hg38.chr15_KI270850v1_alt    267332 134 +    430880 cacaaaatgcttaaaaggtaacctgactctttgttcagggctcagtcctttagatgttaatctgactgggccggtgcacctaaataata---tatatcctcctca--------gtctctctgattcctaaattatGCTGCTGTAC
s ponAbe2.chr15              81532952 145 +  99152023 cacaaaatgcttaaaaggtaacctgactctttgttcagggctcagtcctttagatgttaatttgactgggccagtgcacctaaataataatatatatcctcctcaacccctcagtctctctgattcctaaattatcccACTGCAG
i ponAbe2.chr15             n 0 C 0
s nomLeu3.chr6               18908141 145 - 121039945 cacaaaatgcttaaaaggtaacctgactctttgttcagggctcagtcctttagatgttaatttgactgggccggtgctcctaaataataatatatatcctcctcaacccctcagtctctctgattcctaaattatcccATTGCAG
i nomLeu3.chr6              I 45709 C 0
s rheMac3.chr7               63524002 145 + 170124641 cacaaaatgcttaaaaggtaacctgactctttgttcagggctcagtcctttagatgttaatctgactgggccagggcacctaaatgataatatatatcctcatcaacccctcagtctctctgattcctaaattatcccGCTGCAG
i rheMac3.chr7              N 0 I 49
s macFas5.chr7              106622217 145 - 171882078 cacaaaatgcttaaaaggtaacctgactctttgttcagggctcagtcctttagatgttaatctgactgggccagggcacctaaataataatatatatcctcctcaacccctcagtctctctgattcctaaattatcccGCTGCAG
i macFas5.chr7              I 86169 C 0
s papAnu2.chr7              102523216 140 - 162156779 cacaaaatgcttaaaaggtaaC----CTCTTTGTTCAGGGCTCAGTCCTTTAGATGTTAATCTGACTGGGCCAGGGCacctaaataataatatatat-ctcCTCAACCCCTCAGTCTCTCTGATTCCTAAATTATCCCGCTGCAG
i papAnu2.chr7              I 23523 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7728529   0 +  58131712 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=40352.000000
s hg38.chr15_KI270850v1_alt    267466 45 +    430880 GGGGAGAGAGGCAGCAGGGTAGTGGAGTCATACCAAGCAACAAGA
s ponAbe2.chr15              81533097 45 +  99152023 GGGGAGAGAGGGAGCAGGGTAGTGGAGTCATACCAAGCAACAAGA
i ponAbe2.chr15             C 0 I 4
s nomLeu3.chr6               18908286 45 - 121039945 GGGAAGACAGGCAGCAGGGTAGTGGAGTCATACCAAGCAACAAGA
i nomLeu3.chr6              C 0 I 4
s macFas5.chr7              106622362 45 - 171882078 GGGGAGAGAGGCAGCAGGGTAGTAGAGTCATACCAAGCAACAAGA
i macFas5.chr7              C 0 I 4
s papAnu2.chr7              102523356 45 - 162156779 GGGGAGAGAGGCAGCAGGGTAGTGGAGTCATACCAAGCAACAAGA
i papAnu2.chr7              C 0 I 4
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr26               7728529  0 +  58131712 I
e rheMac3.chr7               63524147 49 + 170124641 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=344357.000000
s hg38.chr15_KI270850v1_alt    267511 292 +    430880 CAGGGTAGTggccaggcatggtggctcacacctgtaatcccagcaatttgggaggccaaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaaacacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggagatggaagttgcagtaagccaagattgtgccattgcactccagccagggggacaagagggagacttcacctc
s ponAbe2.chr15              81533146 290 +  99152023 CAGGGTAGTggccaggcatggtggctcacacctgtaatcccagcaatttgggaggccgaggcgggtggatcacctgaggtcaggagtttgagacctacctggccaacatgatgaaacctcatctctactaaaaatacaaaaattagctgggtatggtggcaggtgcctgtaatcccagctactcaggagattgaggcaagagaatcacttgaacccaggaggtggaggttgcagtgagctgagattgtgccattgtactccagcctgggcgacaagagcaagacttca--tT
i ponAbe2.chr15             I 4 C 0
s nomLeu3.chr6               18908335 289 - 121039945 CAGGGTAGTggccaggcacggtggctcacacctgtaatcccagcaatttgggaggccgaggtgggcggatcacctgaggttaggagtttgagaccagcctggccaac---atgaaacctcatctctactaaaaatacaaaaattagctgggcatggtggcagatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcggtgagctgagattgcgccattgtactccagcctgggcaacaagagcgaaactccgtctc
i nomLeu3.chr6              I 4 I 431
s rheMac3.chr7               63524196 289 + 170124641 CAGGGTAGTggctgggcacggtgactcacacctgtaatcccagcaatttgggaggccgaggcaggcacatcatctgaggtcaggagct-gagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtgacaggtgcttgtaatcccagctactcaggaggctgagccaggagaattgcttgaacctgggaggtggaggttgcagtaaggcaaaattgcaccattgcactgcagcctgggggacaagagtgagagttcatc--
i rheMac3.chr7              I 49 C 0
s macFas5.chr7              106622411 289 - 171882078 CAGGGTAGTggctgggcacggtgactcacacctgtaatcccagcaatttgggaggccgaggcaggcacatcatctgaggtcaggagct-gagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtgacaggtgcctgtaatcccagctactcaggaggctgagccaggagaattgcttgaacctgggaggtggaggttgcagtaaggcaaaattgcaccattgcactgcagcctgggggacaagagtgagagttcatc--
i macFas5.chr7              I 4 C 0
s papAnu2.chr7              102523405 289 - 162156779 CAGGGTAATGGCtcggcatggtgactcacacctgtaatcccagcaatttgggaggccgaggcaggcacatcatctgaggtcaggagct-gagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtgacaggtgcctgtaatcccagctactcaggaggctgagccaggagaattgcttgaacctgggaggtggaggttgcagtaaggcaaaattgcaccattgcactgcagcctgggggacaagagtgagagttcatc--
i papAnu2.chr7              I 4 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7728529   0 +  58131712 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=595.000000
s hg38.chr15_KI270850v1_alt    267803  5 +    430880 g------------------------------aaag
s ponAbe2.chr15              81533436  5 +  99152023 g------------------------------aaag
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18909055  5 - 121039945 g------------------------------aaag
i nomLeu3.chr6              I 431 C 0
s rheMac3.chr7               63524485 35 + 170124641 gcctgggggacaagagtgagacttcatctcaaaag
i rheMac3.chr7              C 0 I 1
s macFas5.chr7              106622700  5 - 171882078 g------------------------------aaag
i macFas5.chr7              C 0 I 121
s papAnu2.chr7              102523694  5 - 162156779 g------------------------------aaag
i papAnu2.chr7              C 0 I 163
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr26               7728529  0 +  58131712 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=-3252.000000
s hg38.chr15_KI270850v1_alt    267808 2 +    430880 aC
s ponAbe2.chr15              81533441 2 +  99152023 aa
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18909060 2 - 121039945 ga
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7               63524521 1 + 170124641 a-
i rheMac3.chr7              I 1 N 0
s macFas5.chr7              106622826 1 - 171882078 a-
i macFas5.chr7              I 121 C 0
s papAnu2.chr7              102523862 1 - 162156779 a-
i papAnu2.chr7              I 163 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556 0 -  40214260 I
e chlSab2.chr26               7728529 0 +  58131712 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=167074.000000
s hg38.chr15_KI270850v1_alt    267810 243 +    430880 AGACAGACAG--------------------------------------------GCTAGTACGTTTTCCACAAATTTCAATTTTACTCTCTTCCCCcaccacacacacacacacacacaAAGCATTTGAGGGATGGGAGGAAGAAACTGAGATCACAGGGAAAATTGTAAGAGACATTCAGAAGGACAGGTCTTAGAAATTTACTAGTTTGGGGGGG---------AGGTCAGAACAGGTGTATATAAAAGAATATTAAGACAGTTCCCAGGTTTAGGCATATGTGACTAG---------------------------------------------------------------------ATAGA
s ponAbe2.chr15              81533443 349 +  99152023 agagagatagagagagagaaagagagaaagagagaaagaaagaaaggaagaaagGGCAGTACATTTTCCACGAATTTCAATTTTACTCTCTTCCCCCACCACACACACACAAA------AAGCATTTGAGGGATGGGAAGAAGAAACTGAGATCACAAGGAAAATAGTTAGAGACATTCAGAAGGACAGGTCTTAGAAATTTACTAGTTTGGGGGG----------ATCAGAGAACAGCAGCATATAAAAGAACGTTAAGACAGTTCCCAGGTTTAGGCATGGATGACTAGTTTGATTATTTCATTTTGTCCTACTCACAATGACAAGGAGAATTATTGATGGAATACATGATGGGGCTGATAGA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18909062 306 - 121039945 agaaagaCAG--------------------------------------------GGTAGTACATTATCCGCGAATTTCAATTTTACTCCCTTCCCCCACCACACACACACAAA------AAGCATCTGAGGGATGGGAAGAAGAAACTGAGATCACAGGGAAAATAATAAGAGACATTCAGAAGGACAGGTCTTAGAAATTTACTAGTTTGGGGGGG---------GTCAGAGAACAGTAGCATATAAAAGAACGCTAAGACAGTTCCCAGGTTTAGGCATGGGTGACTGGTTTGATTATTTCATTTTGTCCCACTCACAATGACAAGGAGAATTATTGATGGAACACATGATGTGGCTGATAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106622827 245 - 171882078 aGACAGACAG--------------------------------------------GGTAGTACATTTTCCATGAATTTCAATTTTACTCTCTTCCCCCACCACACAAACACAA-------AAGCATTTGAGGGATGGGAGGAAGAAAGTGAGATCACAGGGAAAATAGTAAGAGACATTCAGAAGGACAGGTCTTAGAAATTTACTAGTTTCGGGGGGAGGGGGGCAGTCAGAGAGCAGTAGTATATAAAAGAATGCTAGGACAGTTCCCAGGTTTAGGCATGGGTGACTAGTTTGA---------------------------------------------------------------------
i macFas5.chr7              C 0 I 69
s papAnu2.chr7              102523863 245 - 162156779 agacagacag--------------------------------------------agTAGTACATTTTCCATGAATTTCAATTTTACTCTCTTCCCccaccacacaaacacaa-------aagcaTTTGAGGGATGGGAGGAAGAAAGTGAGATCACAGGGAAAATAGTAAGAGACATTCAGAAGGACAGGTCTTAGAAATTTACTAGTTTCGGGGGGAGTGGGGCAGTCAGAGAGCAGTAGTATATAAAAGAATGCTAGGACAGTTCCCAGGTTTAGGCATGGGTGACTagtttga---------------------------------------------------------------------
i papAnu2.chr7              C 0 I 1478
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7728529   0 +  58131712 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=613311.000000
s hg38.chr15_KI270850v1_alt    268053 1322 +    430880 GTGCTAGGAGATGGATACGTGAAAAtttaaatatcatcattttgaacacccatgtcactccaagtgagattccctaa-atatatgatatacagacagatatatgggtttgaaactctggagatgaatacaaatttaggagtccctggaacacaggtcatgacttaagtaatgggagtcaaagattactcagagaaagcacagaatgagaagagaagaa----gtaggacAAGGAAGAAGAGATCGGAGGAGACCAAGAAAGGGTGATAAGATCAAAACAGGAGAAAAGAATCCGACAGAAGTCTCATTTGATTATCATGTCCCTTCCCAGAGGACAGGGACATGTCTTTTTT-----------GTCTTTTATACCCAATTATCACAGGTCCTGGTGCAGCAGACACACAGTTTTTTTTTTTTTAATTGTGTTGTACTACTCACAGTTTCCTGTATTCACCAGGGGAGAAAAAAGTAAGTATAAAGAAGCACAGACACAGATGTTTTTACACTG--TGTACTAAAGGGGTcagattatacacaatattttatgccttacttttttacttaatatatcttagaagtttgcacgtgctcttatggaaagactggctgcatttttt---ggtccacaacagaacaacagaatattataaaacggtacactataatttttatttaaccaactctttattggtggacattaagaatgGAGGaatgtttcaacaaaggaacaatcaacagtatcaaaatactgcagaggggacaatttggggactaagaggggagccactggatttgacaactaggagataaattttagtgcaacgatgaaggcagaatccagagtataatgagctcagtgaaaaaaggtgaagaCATGTAGCTTATTCTCTCAAGAAACTAGGCTATGATAAACTGGCAGAGGCTCTAAGAGTGGGAGGTGAGTTGTTTTCTCCTTCATGTAAATATATTTAC-CTTTTAAACACTAGGCCCAATTTTATATCCTATTTCATTTAACTTtatgaacatatttatgtatgtatgcatgtatgtatgtatctcatgtGGTGTTTTAGACACTGAAAAATAACTCATTT---CTATTATAAAACTGATATCTTTAGATGTTCAGAAGCAACTTCCTAAAAGGAGGTAGCAGTAATGGAGCTATGTCTATCATTCTTTCCCATCAACCCCCTTGATGGAGATGTAAACATGTGTCCATCAAGCCTTTAATTTTTACCTCTTATCTTCATGGCTCTCCATATAAAACTTAACTCTTTTTTTTTtctatttgtatacgtatatttatatgtatatc------------------------------------------tatatcGAGAGAGAGAGAGagag
s ponAbe2.chr15              81533792 1299 +  99152023 ATGCTAGGACGTGGATACATGAAAATTTAAATATCAT---TTTGAACACCCATGTCACGCCAAGTGAGATTCCCTAACATATATGATATACAGACAGATATATTGGTT-GAAACTCTGGAGATGAATACGGATTTAGGAATCCCTGGAACACAGGTCATGACTTAAGTAATGGGAGTCAAAGATTACTCAGAGAAAGCACAGAACGAGAAGAGAAGAAAGAAGTAGGACAAGGAAGAAGAGATCGGAGGAGACCAAGGCAGGGTGATAAGATCAAAACAGGAGAAAAGAATCTGATAAAAGTCCCAACTGATTATCATGTCCCTTCCCAGAGGACAGGGACATGCCTTTTTT-----------GTCTTTTATACCCAATTATCACAGGTCCTGGTGCAGAAGCCACACAG-----TCTTTTTAAATTGTGTTCTACTATT--CAGTTTCCTGTATCTACCAGGGGAGAAAAAACCAAGTATAAACTAGCATAGACATAGATTTTTTTACACTGTAtatactaaaggggtcagattatatacaatattttatgccttacttttttacttaatatatcttagaagtttgcacatgctcttatggaaagactggttgcattttttttgggtctacaacagaatatt---ctattataaaactgtacactataatttttatttaaccagctctttactggtggacattaagAACGGAGGaatgtttcaacaagggaacaatcaacaatatcaaaatactggagaggggtcaatttggggactaagaggggagccactgaatttggcaactaggagataaattttggcacaacgatgaaggcagaatccagattataatgagctcagtgaaaaaaggtgaagacatgtagcttattctctcaagaaactaggctatgataaactggcagaggctgtaagagtgggaggtgagTTGTTTTCTCCTTCATGTAAATATATTTACTTTTTTAAACACTAGGCCCAATTTTATATCCTACTTCATTTAACTTT-TGAACATGTTTATGTATGTATATATG------------TCATGTAATGTTTTAGACATTGAAAAAAACCTCATTTCTGCTATTATAAAACTGTTATCTTTAGATGTTCAGAAGCAACTTCCTAAAAGGAGGTAGCAGTAATGGAGCTATGTCTATCATT-----CCATCAACCCCCTTGCTGGAGATGTAAACATGTGTCCATCAAGCCTTTAATTTTTACCTCTCATCTTCATTGCTCTCCATACAAAACTTAACTC---TTTTTTtgtatctgtatatgtgtatttatatgtatatc------------------------------------------tatatCGAGAGAGAGagagag--
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18909368 1299 - 121039945 GTGCTATAAGGTGAATACATGAAAATTTAAATATCAT---TTTGAACACGCATGTCACACCAAGTGAGATTCCCTAACATATATGACATGCAGACAGATATATGGGTTTGAAACTCTGGAGACGCACACGGATTTAGGAATCCCTGGAACACAGGTCATGACTTAAGTAATACGAGTCAAAGATTACTCAGAGAAAGCACAGAATGAGAAGAGAAGAAAGAAGTAGGCCAAGGAAGAAGAGACCGGAGGAGACCAAGGCAGGGTGATAAGATCAAAACAGGAGAAAAGAATCCAATAAACGTCCCATTCAATTATCATGTCCCTTCCCAGAGGACAGGGACATGCCTTTTTT-----------GTCTTTTATACCCAATTACCACAGGTCCTGGCACAGAAGCCACACAG-----TCTTTTTTAATTGTGTTCTACCATTCACAGTTTCCTATATCCACC-GGGGAGAAAAAAgcaagtataaactagcacagacatagatttttttacactg--tatactaaaggggtcagattatatacaatattttatgccttacttttttacttaatatatcttagaagtttgcacatgcttttatggaaagactggctgcatttttttt-ggtctacaacagaatatt---ctattataaaactgtacactataatttttatttaaccaactctttactggtggacattaagaatggaggaatgtttcaagaagggaacaatcaacaatatcaaaatactgcaga-gggtcaatttggggactaagagggaagtcactggatttggcaactaggagataaattttagcacaatgatgaaggcagaatccagattataatgagctcagtgaaaaaaggtgaagacatgtagcttattctctcaagaaactaggctatgataaactggcagaggctgtaagagtgggaggtgagTTGTTTTCTCCTTCATGTAAATATATTTACTTTTTTAAACACTAGGCCCAATTTTATATCCTGCTTCATTTAACTTT-TGAAtatgtttatgtatgtatgtatg------------ttatgtaatgtTTTAGACACTGAAAAAAACCTCATTTCTGCTATTATAAAACTGTTATCTTTAGATATTCAGAAGCAACTTCCTAAAAGGAGGTAGCAGTAATGGAGCTACGTCTATCATTCTTT-CCATCAATCCCCTTGCTGGAGATGTAAACATGTGTCCATCAAGCCTTTAATTTTTACCTCTTATCTTCATGGCTCTCCATACAAAACTTAACTC---TTTTTTtgtatctgtatatgtgtatttatatgtatatc------------------------------------------tatatctaGAGAGagagag----
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106623141 1366 - 171882078 GTGCTAGGAAGCGGATACATGAAAATTTAAATATCATCATTTTGAACACCCATGTTACTCCAAGTGAGATTCCCTAACATATATGATATACAGACAGATATATGGGCTTGAAACTCTGGAGATGAATACAGATTTAGGAATCCCTGGAACACAGGTCATGACTTAAGTAATGGGAGTCAAAGATTACTCAGAGAAAACACAGGATGAAAAGAGAAGAAAGAAGTAGGCCAACGAAGAAGAGATCGGAGGAGACCAAGGCAGGGTGATAAGATCAAAACAGGAGAAAAGAATCCGATAGAAGTCCCATTCGATTATCATGTCCCTTCCCAGAGGACATGGACATGCtttttttttttttttttaatcttttATACCCAATTATCACAGGTCCTGGCACAGAAGCCACACAG-----TTTTTTTAAATTGTGTTCTACTATT--CAGTTTCCCGTATCCACCAGGGGAGAAAAAAGTAAGtataaacaagcacagacatagatttttttacactg--tatactaaaggggtcagattatacacaatattttatgcctcactttttaacctaatatatattagaagtttgtacatgttcttatggaaagactggctgcattttttt--gttctacaacagaatatt---ctattataaaactgtacactataatttttatttaaccagctctttattggcggatattaagaatggaggaatgtttcaacaagggaacaatcaacagtatcagaatactgcagaggggtcaatttggggactaagaggggagccactggatttggcaactaggagatAAATTTTAGCACAATGATGAAGGCAGAATCCACATTATAATGAGTTCAGTGAAAAAAGGTGAAGACATATAGCTTATTCTCTTAAGAAACTACGCTACGGTAAACTGGCAGAGGCTGTAAGAGTGGGCAGTGAGTTGTTTTCTCCTTCATGTAAATATATTTACTTTTTTAAACACTAGGCCCAATTTTATACCCAACTTCA-TTAATTTTACGAACATGTTtatgtaagtatgtatatatgtatg----ttatgtaatgtTTTAGACACTGAAAAATAACTCATTTCTGCTATTATAAAACTGTTATCTTTAGATGTTCAGAAGCAACTCCCTAAAACTAGGTAGCAGTAATGGAGCTATGTCTATCATTCTTTCCCATCAACCCCCTTGCTGGAAATGTAAACATGTGTCCATCAAGCCTTTAATTTTTACATCTCATCTTTATGGCTCTCCATACAAAACTTAACCT---TTTTTTTGT-TTTGtatatgtatatttatatgtatatctatctatctatctatctatctatctctatatatagatatatatatatagagagagagagagagag
i macFas5.chr7              I 69 I 13
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e chlSab2.chr26               7728529    0 +  58131712 I
e papAnu2.chr7              102524108 1478 - 162156779 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=18937.000000
s hg38.chr15_KI270850v1_alt    269375 24 +    430880 aaagagtcttgctatgttgcccag
s ponAbe2.chr15              81535091 22 +  99152023 --agagtcttgctgtgttgcccag
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18910667 22 - 121039945 --agagtcttgctatgttgcccag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624520 24 - 171882078 agagagtcttgctatgttgcccag
i macFas5.chr7              I 13 C 0
s papAnu2.chr7              102525586 24 - 162156779 agagAGTcctgctatattgctcag
i papAnu2.chr7              I 1478 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr26               7728529  0 +  58131712 I
e panTro4.chr15              80054702 5317 +  99548318 M

a score=838483.000000
s hg38.chr15_KI270850v1_alt    269399 775 +    430880 gctgatctcaaactcctgggctcaagcaatcctcccaccttggcctcgcaaagtgctgggattacaggcgtgaaccactgtgcccagccTCAGCCTTAACTCTTAAAATATCTTCAAACCAATATTCTTCTGTTCTAATTTTTAAGAATAGATGTGTTTAAACCAACT--AACTTATTTTGACAAAAATTGGAGTTAAGACTCAGACTTCCTCAAAT----AGTTCTCCTAAAACCATTTACAGAATAATCTATCTTTTCAGTATTAAGTTAAAATACCACCTTTTCCTTATACTAAATTCTCGTTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGATAGTCCACAATATTTTATTTACTATCTGGTTGAAAGAGTCTATACTTTATTACTTTTTATTACTTATTCTTCTAAACAAATTTTAGAGTCGTTTTGTCAAGTGTCAAAAATAAATCTGCCAGAATTTGTACTGAAATTTGTGTGTGTGTGtatatatatataatacacacacactatatataaaatataaaatgtatatatacaatttatatatataa--atatttataaaatatgaaatatatatatataCACACACACTTTTCT-------AGTTTttttttttttttttttttttgagacagggtctcactctgtcacctaggctggagttcagaggcatgatctcggctcactgcaacctctgcctcccaggctcaagtgctcctcccacctcagcctcagaagtagttggaaatacaagtgtgtgcc
s panTro4.chr15              80060035 762 +  99548318 gctgatctcaa-ctcctgggctcaagcaatcctccc-ccttggccttgcaaagtgctgggattacaggcgtgaaccactgtgcccagccTCAGCCTTA-CTCTTAAAATATCTTCAAACCAATATTCTTCTGTTCTAATTTTTAAGAATAGATGTGTTTAAACCAACTGTAACTTATTTTGACAAAAATTggagttaagactcagacttcctcaaat----agttctcctaaaaccatttacagaataatctatcttttcagtattaagttaaaataccaccttttccttatactaaattctcgtttgcatgactctggttctaaacttccattgcctttatctgtctggcccaggaatagtccacaatattttact-actatctggttgaaagagtctatactttattaatttttattatttattcttctaaacaaattttagaggcgttttgtcaagtgtcaaaaataaatctgccagaatttgtactgaaattTGTGTGTGTGTGtatatatatata-----cacacactatatataaaatataaaatgtatatatataatttatatatataa--atatttataaaatatgaaatatatgtatataCACACACATTTTTCt-------------ttcttttttttttttttttgagacagggtctcactctgtcacctaggctggagttcacaggcatgatctcggctcactgcaacctctgcctcccaggctcaagtgctcctcccacctcagcctcaggagtagttggaaatacatgtgtgtgcc
i panTro4.chr15             M 5317 C 0
s ponAbe2.chr15              81535113 740 +  99152023 gctgatctcaaactcctgggctcaagcaatcctcccaccctggccttg-aaagtgctgggattaca-gcgggatccactgtgcccagcCTCAGCCTTAACTCGTAGAATATCTTCAAACCAATGTTCTTCTGTTCTGCTTTTTAAGAATAGATGTGTTTAAACC------AACTTATTTTGACAAAAATTGAAGTTAAGACTGAAACTTCCTCAAATGGccagttctcttaaaactatttacagaataatctatcttttcactattaagttaaaataccaccttttccttatactaaattctcacttgcatgactctggttttaaacttccattgcctttatctgtctggcccagggctagtccacaatattttatttaatatctggttgaaagagtctatactttattattttttattatttactcttctaaacaagttttagagtcattttgtcaagtgccaaaaataaacctgctggaatttctactgaaattTG--------------tatatata-----cacatac-----------------------atacacaatttatatatataaatatatatataaaatataAAACGTGTATATATACACACCtttttttttttttttttttttttttttttttttttttttttgagacagggtcttactctgtcacctaggctggagttcagaggcatgatctcagctcactgcaacctctgcctcccaggctcaagtgatcctcctgccttagcctcaggagtagctggaactacaagtgtgtgcc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18910689 739 - 121039945 gctgatctcaaactcctgggctcaagcaatcctcccaccttggccttg-aaactgctgggattacaagtgtgaatcactgtgcccagccTCAGCCTTAACTCTTAAAATATCTTCAGACCGATGTTCTTCTGTTCTAATTTTTAAGAATAGATGTGTTTAAACCAATTACAACTTATTTTGACGAAAATTGAAGTTAAGACTCAAACTTCCTCAAATGGCCAGTTCTCCTAAAACTATTTACAGAATAATCTGTCTTTTCACTATTAAGTTAAAATACCACCTTTTCCTTATACTAAATTCTCATTTGCATGACTCTGGCTTTAAACTTCCATTGCCTTTATCTGTCTGACCCAGGGCTAGTCCACAATATTTTATTTAATATCTGATTGAAAGAGTCTATActttattattttttattatttactcttcta---aaattttagagtcattttggcaagtgccaaaaataaatctgctggaatttctactgagattTG--------------tatatata-----cacatac-----------------------atacaaaatttatatatataaatatatatataaaatataaaatgtgtatatataCACACGCtttttttt-----cttttctttttttttttttttttttttgagacagggtcttactctgtcacctaggctggagttcagaggaatgatctcggctcactgcaacctctgcctcccaggctcaagggatcctcccgccttagcctcaggagtggttggaactacaagtgtgtgcc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624544 726 - 171882078 gctgatctcaaactcctgggctcaagcaatcctcccaccttggcctcacaaagtgctgggattaaaggcgtgaaccactgtgcccagccTCATCCTTAACTCTTAATATATCTTCAGACTGATGTTCTTCTGTTCTAATTTTTAAGAATAGATGTGTTTAAACCAACTCTAACTTATTTTGACAAAAACTGGAGTTAAGACTCAAACTTCCTCAAATTGTCAGTTTTCCTAAAACCATTTACAGAATAATCTATCTTTTCACTATTAAGTTAAAATACCACCTTTTCCTTACACTAAATTCTCATTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGCTAGTCTACAATATTTTATTTAATATCTGATTGAAAGAGTCTATACTTTATTATTTTTTATTAtttactcttctaaacaaactttagagtcattttgtcaagtgccaaaaataaatctgctggaatttGTA-----AATTGTGTGTG--------tatatata-----tatatac-----------------------acacacaatatatatatatga--atagatataaaatataaaaaatatatataCACACACACAC---------------------tttttttttttttttttgagacaggatctcactctgtcatgtaggctggagttcagaggcatgatctcggctcactgcaacctctgccttccaggctcaagagatcctcctgcctcaacctcaggagtagttggaactacaggtgtgtgcc
i macFas5.chr7              C 0 I 7673
s papAnu2.chr7              102525610 736 - 162156779 gctgatctcaaactcctggactcaagcaatccttccaccttggccttgcaaagtgctgagattacaggcatgaaccactgtgcccagcctcaggctTAACTCTTAAAATATCTTCAAACTGATGTTCTTCTGTTCTAATTTTTAAGTATAGATGTGTTTAAACCAACTATAACTTATTTTGACAAAAATTGGAGTTAAGACTCAAACTTTCTCAGATGGTCAGTTCTCATAAAACTATTTACAGAATAATCTATCCTTTCACTGTTAAGTTAAAATACCACCTTTTCCTTACACTAAATTCTCATTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGCTAGTctacaatgttttatttaatatctgATTGAAAGAGtctatactttattattttttattatttactcttCTAAACAAACTTTAGAGTCATTTTGTCAAGTGCCAAAAATAAATCTGCTGGAATTtgta-----aattgtgtgtgtgta----tatatata-----tatacac-----------------------acacacaatatgtatatatga--atagatataaaatataaaaaatatatatacacacacacacacactt---------------tttttttttttttttttgagacaggatctcactctgtcatgtaggctggagttcagaggcatgctctcggctcactgcaacctctgccttccaggctcaagtgatcctcctacctcaacctcaggagtagttggaactataggtgtgtgcc
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=1017429.000000
s hg38.chr15_KI270850v1_alt    270174 840 +    430880 acagacacccagctaattgtcatctacccgcctcagcttcccaaactgtttggattacaggtatgagccactgtgcccagcAGAAATTACATTTACAAATTAATATGAAGACAtggtgataactaacatatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaattttgtcctgtccttgataaaagtcctgcacatctaagtttattcctaggcatttaatttttgctgaaatacctgaaaaaatacttcatcactatatcttctatgtgattatagctaacattggggaaggctattgatttttatataaaagaacttttaaccagtaatcttaaaaattgttttttctcagttggttcctttggatatttttaggtaaacaatcatgtcaactgaaaataatga---ttattttTCTATAAAGACTATGACATCACAGGAAAATACAGTAAATACTTTTTAAAAGAATATAAAAGggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagaccatgaggtcaggagatcgagaccatcctggctaacacggtggaaccccatctctactaaaaaatacaaaaaattagccgggaatggtggcgggcgcctgtagtcccagctactggggaggctgaggcaggagaatggtgggaacccaggaggtggagcttgcagtgagccgagaccacggcactgcactccagcctgggtgacagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaatatatatatatat----atatatatataaaacta
s panTro4.chr15              80060797 821 +  99548318 acagacacccagctaattgtcatctacccgcctcagcttcccaaactgtttggattacaggtatgagccactgtgcccagcAGAAATTACATTTACAAATTAATATGAAGACAtggtgataactaacatatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaattttgtcctgtccttgataaaagtcctgcacatctaagtttattcctaggtatttaatttttgctgaaatacctgaaaaaatacttcatcactatatcttctatgtgattatagctaacattggggaaggctattgatttttatataaaagaacttttaaccagtaatcttaaaaattgttttt-ctcagttggttcctttggatatttttaggtaaacaatcatgtcaactgaaaataatga---ttattttTCTATAAAGACTATGACATCACAGGAAAATACAGTAAATACTTTTTAAAAGAATATAAAAGggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagaccatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaaatacaaaaaaatagccgggaatggtggcaggcgcctgtagtcccagctactggggaggctgaggcaggagaatggtgggaacccaggaggtggagcttgcagtgagccgagatcacggcactgcactccagcctgggtgacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaaaagaatata----------------------aaACTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81535853 819 +  99152023 acagacacccagctaattgtcatctacccgcctcagcttcccaaactgttcggattacaggtatgagccactgtgcccagcAGAAATTACATTTATAAATTAATATGAAGACATGGTGATAACTAAcatatttataacatgaaatctgctcatccaggaacacagaatgcaaatctttcattccactcagcaaaattttgtcatgtccttgataaaagtcctgcacatctaagtttattcctaggtatttaacttttgctgaaatacctgaaaaaatacttcatcactatatcttctatgtgattatagctaacattggggaaggctattgatttttatataaaagaacttttaaccagtaatcttaaaaattgttttt-ttcagttggttcctttggctatttttaggtaaacaatcatgtcaactgaaaataatgattgttatttttctATAAAGACTATGACATcatgggaaaatacagtaaatactttttaaaagaatataaaacggccgggcacagtggctcacgcctgtaatcccagcattttgggaggccgaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctagtaaaaaatacaaaaaattagccgggcatggtggcaggcgcctgtagtcccagctactggggaggctgaggcaggagaatggtgtgaacccaggaggtggagcttgcagtgagctgagatcacgccactgcactccagcctgggtgacagagcgagactctgtctcaaaaaaaaaaaaaaaaga-----atata----------------------aaacta
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18911428 810 - 121039945 acagacacccagttaattgtcatctaccctcctcagcttcccaaactcttcggataacacgtatgagccaccgtgcccagcAGAAATTACATTTATAA---AATATGAAGACAtggtgataactaacgtatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattcctctcagcaaaattttgtcatgtccttgataaaagtcctgcacatctaagtttattcctaggtatttaatttttgctgaaatacctgaaaaaatacttcatcattatatcttctatgtgattatagctaacattggggaaggctattgatttttatataaaagaacttttaaccagtaatcttaaaaa---ttttt-ttcagttggttcc-ttggctatttttaggtaaacaatcacgtcaactgaaaataatgattgttatttttctATAAAGACTATGACATCATGGGAAAATACAGTAAATACTTTTTAAAAGAATATAAGACAgccaggcgcagtggctcacacctgtaatcccagcattttggaaggccagggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccacctctactaaaaaatacagaaagttatccgggcatggtggcgggcgcctgtagtcccagctactggggaggctgaggcaggagaatggtgtgaacccaggaggtggagcttgcagtgagctgagatcatgccactgcactccagcctgggtgacagagagagactctgtctcaaaaaaaaaaaaaaga-------atata----------------------aaacta
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106632943 833 - 171882078 ACAGACACCCAGCTAAttgtcatctactcacctcagcttcccaaactttcgggattacaggtatgagccactgtgcccagcAGAAattacatttataaattaatatgaagacatgttgataactaacatatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaattttgtcatgtccttgataaaagtcctgcacatctaagtttattcctagatatttaatttttgctgaaatacatgaaaaaatacttcatcactatatcttctaagtgattatagccaacattggggaaggctaatgatttttatataaaagagcttttaaccagtaatcttaaatattgttttt-ttcagttagttcctttggatatttttaggtaaacaatcacgtcaactgaaaataatgattgttatttttcttTAAAGACTATGACATCATGGGAAAATACAGTAAATACTTCTTAAAagaatataaaagggccgggtgcagtggctca-gcctatgatgccagcactttgggaggccgaggcgggcagatcacgaggtcaggaggtcgagaccatcctggctaacatggtgaaaccccgtctctattaaaaaatacaaaaaattagccgagtatggtggtgggcacctgcagtcccagctactggggaggctgaggcaggagaatggtgtgaacccaggaggtggagcttgcagtgagtccagattgcaccactgcactccagccttggcaacagagcaagactccatctcgaaaaaaaaatatatatatatatatatatatatat-----------TA-AAAActt
i macFas5.chr7              I 7673 I 4107
s papAnu2.chr7              102526346 846 - 162156779 acagacacccagctaattgtcatctactcacctcagcttcccaaactttcgggattacaggtatgagccactgtgcccagcagaaattacatttataaattaatatgaaGACATGTTGATAACTAACATATTTATAACATGAAATCTGCTCATCCAGGAACATAGAATGCAAATCTTTCATTCCACTCAGCAAAATTTTGTCATGTCCTTGATAAAAGTCCTGCACATCtaagtttattcctagatatttaatttttgctgaaatacatgaaaaaatacttcATCACTATATCTTCTATGTGATTATAGCCAACATTGGGGAAGGctaatgatttttatataaaagagcTTTTAACCAGTaatcttaaaaattgttttt-ttcagttAGTTCCTTTGGATATTTTTAGGTAAACAATCACGTCAACTGAAAATAATGattgttatttttctataaagacTATGACATCATGGGAAAATACAGTAAATACttcttaaaagaatataaaagggccgggtgcagtggctcatgcctatgatcccagcactttgggaggccgaggcgggcagatcacaaggtcaggaggtcgagaccatcctggctaacatggtgaaaccccatctctattaaaaaatacaaaaaattagccgggtatggtggtgggcacctgcagtcccagctactggggaggctgaggcagatgaatggtgtgaacccaggaggtggagcttgcagtgagtccagattgcaccactgcactccagccttggcaacagagcaagactccatctcgaaaaatatatatatatatatatatatatatatatatatatatatatataaaactt
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=309071.000000
s hg38.chr15_KI270850v1_alt    271014 303 +    430880 tagagaatatgacctcaactatt-aagcatatgtgtaagggt-tatgtattttaatagcaaagaa-aaaatatatactggta-------gaaaatgaccatcatgtcaacagtc---------aatagtggttatattagatagagaaattatgggagactttaatttttttcttttatcttttctgtactttaccaattttctcaacaat--------------ggttgcttatgagttttaaaatt----aaaaaaaGGTTTTAAAAATTTTTCCAACATGGAAAGTTATATTTCTTTATATACTAAA-ACAAAAACAAAACTTTCTATTTGAATACCT
s panTro4.chr15              80061618 304 +  99548318 TAGGGaatatgacctcaactatttaaacatatgtgtaagggt-tatgtattttaatagcaaagaa-aaaatatatactggta-------gaaaatggccatcatgtcaacagtc---------aatagtggttatattagatagagaaattatgggagactttaatttttttcttttatcttttctgtactttaccaattttctcaacaat--------------ggttgcttatgagttttataatt----aaaaaaaGGTTTTAAAAATTTTTCCAACATGGAAAGTTATATTTCTTTATATACTAAA-ACAAAAACAAAACTTTCTATTTGAATACCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81536672 320 +  99152023 tagagaatacgacctcaactatttaaacatatgcataagggt-tatgtattttactagcaaagaa-aaaatatatactggtagaaaatggaaaatggccatcatgtcaactgtcaatagtggtaatagtggttatattagatagagaaattgtgggagactttaatttttttcttttctcttttctgtactttactaattttctcaacaat--------------ggttgcttatgagttttataatt----aaaaaaaGGTTTTTAAAATTTTTCCAACATGGAAAGTTGTATTTCTTTATATACTAAA-ACAAAAACAAAACTTTCTATTTGAATACCT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18912238 278 - 121039945 tagagaatatgacctcaactatttaaacacatgtataagggt-tatgcattttactagcaaagaa-aaaatatacactggta-------gaaaatggccatcaggtcaactgtc----------atagtggttatattaggtagagaaattatgggagactttaatttttttcttttctcttttctgtactttactaattttctcaacaat--------------ggttgcttatgagttttataatt----aaaaaaaGGTTTTTAAAGTT-------------------------TTTATATACTAAA-ACAAAAACAAAACTTTCTATTTGAATACCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65372751 290 + 171882078 tatagaatatgacctcaactatttaaaaatatctgtaagggtatatgtactttgataacaaaaaacaaaatacatactgata-------gaaactagccatcatgtcaac----------------agtggttatattaggtagagaaattatgtgagattttaatttttt--------------tatattttactactggtctcaataat--------------ggttctttacaagttttataatcaagaaaaaaaaGGTTTCTAAAGTTTTTGCAAAATGGGAAGTTATACTTCTTTATATACTAAAGATAAAAACAAAACTTCCTATTTGAATACCT
i macFas5.chr7              I 18636 C 0
s papAnu2.chr7              102527192 319 - 162156779 tagaGAATATGACCTCAACTATTGAAACATATGTATAAGGGT-TATGTATTTTActagcaaagaa-aaaatatatactggtA-------GAAAATGGCCATGATGTCAACTGTC---------AATAGTGGTTATATTAGGTAGAGAAATTATGGGAgacttgaatttttt-cttttttcttttctgtactttACCAATTTTCTTAGTAATTATGAGAATTATGAAGTTGCTTATgagttttagattt---taaaaaaaggtttttaaaaattttccaacaTGGAaagttatatttctttatatactaaaaacaaaaacaaaactttctatTTGAATATCT
i papAnu2.chr7              C 0 I 3781
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=3160.000000
s hg38.chr15_KI270850v1_alt    271317 3 +    430880 atg
s panTro4.chr15              80061922 3 +  99548318 atg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81536992 3 +  99152023 atg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               18912516 3 - 121039945 atg
i nomLeu3.chr6              C 0 n 0
s macFas5.chr7               65373041 3 + 171882078 TTG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102531292 3 - 162156779 atg
i papAnu2.chr7              I 3781 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556 0 -  40214260 I
e chlSab2.chr26               7728529 0 +  58131712 I

a score=2345.000000
s hg38.chr15_KI270850v1_alt    271320 2 +    430880 gc
s panTro4.chr15              80061925 2 +  99548318 gc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81536995 2 +  99152023 gc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102200484 2 + 121039945 gc
i nomLeu3.chr6              I 5702 C 0
s macFas5.chr7               65373044 2 + 171882078 AC
i macFas5.chr7              C 0 I 87
s papAnu2.chr7              102531295 2 - 162156779 gc
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556 0 -  40214260 I
e chlSab2.chr26               7728529 0 +  58131712 I

a score=219488.000000
s hg38.chr15_KI270850v1_alt    271322 191 +    430880 aaaaccctatctctacaaaaaatacaaaaaa--------------ttagcaaggtggggtagtacacacctgtagtcccagctactctagaggctgaggtgggaggatcacctgagtccccagagaatgaggctccagtgagccgtgatcatagcactgcattccagcctgggagacagagaaagaccccatctcaaaaaaaaaa
s panTro4.chr15              80061927 191 +  99548318 aaaaccctatctctacaaaaaatacaaaaaa--------------ttagcaaggtggggtagtacacacctgtagtcccagctactctggaggctgaggtgggaggatcacctgagtccccagagaatgaggctccagtgagccgtgatcatagcactgcattccagcctgggagacacagaaagaccccacctcaaaaaaaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81536997 191 +  99152023 aaaaccctatctctacaaaaaatacaaaaaa--------------ttagctaggtagggtagtacacacctgtagtcccagctactctggaggctgaggtgggaggatcacctgagtccccagagaatgaggctccagtgagccgtgatcacagcactgcattccagcctgggagacagagaaagaccccatctcaaaaaagaaa
i ponAbe2.chr15             C 0 I 1763
s nomLeu3.chr6              102200486 204 + 121039945 aagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtttgccaagtgtggtggtacacacctgtagtcccaactactctggaggctgaggtgggaggatcacctgagtccccagagactgaggctgcagtgagctgtgatcaaaccactgccttccagcctgggcaacag-gcaagaccccatctcaataaatata
i nomLeu3.chr6              C 0 I 1
s macFas5.chr7              106637883 191 - 171882078 aaaaccctgtctctacgaaaaatacaaaaaa--------------gtagctaggtgtggtagcacacacctgtagtcccaactactgtggaggctaaggtgggaggatcacctgagtccccagagactgaggctccagtgatccatgaccataccactgcattccagcctgggcaacagagcaaaaccccatctcaaaaaaaaga
i macFas5.chr7              I 4107 C 0
s papAnu2.chr7              102531297 191 - 162156779 aaaaccctgtctctacgaaaaatacaaaaaa--------------atagctaggtgtggtagtacacacctgtagtcccaactactgtgGAGGCtaacgtgggaggatcacctgagtccccAGAGACTGAGGCTCCAGTGATCCATgaccataccactgcattccagcctgggcaacagagcaaaaccccatctcaaaaaaaaga
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=-895.000000
s hg38.chr15_KI270850v1_alt    271513 11 +    430880 aaaaaagaaag
s panTro4.chr15              80062118 11 +  99548318 aaaaaagaaag
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              102200691  5 + 121039945 atata------
i nomLeu3.chr6              I 1 C 0
s macFas5.chr7              106638074  4 - 171882078 -aaaa------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102531488  4 - 162156779 -aaaa------
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr26               7728529  0 +  58131712 I
e ponAbe2.chr15              81537188 1763 +  99152023 I

a score=1151636.000000
s hg38.chr15_KI270850v1_alt    271524 955 +    430880 aaagaaaGaaaaaagaaatatccacaatgatctgaaatgcctatctgtatgagactgtcctttgttcaca-ttttttcaagcaaatatcacacaataaattgaatgcaggta--------------------------------caaatgacatat------------------caaacatcaaagaaatttgcaaaagatgtaagactgtactacCTTGGGTTTAGAAATTTTCTTATCATAAAAGCATTTATAACAATATTTTGTGAGCTTttaaggaatattttaagtatttctgatttaatttctagtgataaataccaatagatataacccacatacacaaaagctccttgggccctcaatatacttttaagagtgtaaaggaatcctgaccccaaaactttgagaactgctgCCTTCCCCTCTACTTT-ATTCCTTCCCTAGAATTTCTTCCTTGGAAGAAACATTCCTTTGCCATTCTATGTTAACTTACACAGTTCCATTGAGGCCAGTTTTGCTACCTCTCTCCCATCTTTCCACATCCCTCTCTTGACACAAAACCTGACCAAAGGACTCTACCGGCCCGCCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGAAAATCTGGGTTTTCCCTGAGACTAGACCTCTCTTTCTGGGAGATACGGAATCACAGGGACAAGGCTGGCCCT---------GTCAGAATTCATCTTGTCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAATGCCAGACTGCTTTCTAGAAAGTCAAAGATAATTATACTTTCTGCCACGACTGTGAAAATGCCCATTTCATTGCACGCTTTCTAACATTTATACCAATCTGATAAATAAAAGCTGGTACCTAGAAGAAAAAAAggct-gggtatggtggctcatgcctgtaatcccagtactttgggagaccaaggtgagtggatcacctgaggtcaggagttcgagacaagcctggccaacatgatgaaaccccatctctagt
s panTro4.chr15              80062129 951 +  99548318 aaagaaa----aaAGAAATATCCATAATGATCTGAAATGCCTATCTGTATAAGACTGTCATTTGTTCACA-ATTTTTCAAGCAAATATCACACAATAAATTGAATGCAGGTA--------------------------------CAAATGACATAT------------------CAAACATCAAAGAAATTTGCAAAAGATGTAAGACTGTACTACCTTGGGTTTAGAAATTTTCTTATCATAAAAGCATTTATAACAATATTTTGTGAGCTTttaaggaatattttaagtatttctgatttaatttctagtgataaataccaatagatataacctacattcacaaaagctccttgggccctcaatatacttttaagagtgtaaaggaatcctgaccccaaaactttgagaactgctgCCTTCCCCTCTACTTT-ATTCCTTCCCTAGAATTTCTTCCTTGGAAGAAACATTCCTTTGCCATTCTATGTTAACTTACATAGTTCCATTGAGGCCAGTTTTGCTACCTCTCTCCCATCTTTCCACATCCCTCTCTTGACACAAAACCTGACCAAAGGACTCTACCGGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGAAAATCTGGGTTTTCCCTGAGACTAGACCTCTCTTTCTGGGAGATATGGAATCACAGGGACAAGGCTGGCCCT---------GTCACAATTCATCTTGTCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAATGCCAGACTGCTTTCTAGAAAGTCAAAGATAATTATACTTTCTGCCACGACTGTGAAAATGCCCATTTCATTGCACGCTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGTACCTAGAAGAAAAAAAggct-gggtatggtggctcatgcctgtaatcccagtactttgggagaccaaggtgagtggatcacctgaggtcaggagttcgagacaagcctggccaacatgatgaaaccccatctctagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81538951 964 +  99152023 AAAAAAAAAAAAAAGAAATATCCATAATGATCTAAAATGGCtatctgtatgagactgtcctttgttcaca-ttttttcaagcaaatatcacacaataaattgaatgcaggtg--------------------------------caaatgacatat------------------caaacatcaaagaaacttgcaaaagatgtaagattgtactactttgggtttagaaattttcttttcataaaagcatttataacaatatttggtgaacttttaaggaatattttaagtatttctgatttaacttctagtgataaataccaatagatataacctatatacagaaaagctccttggaccctcaatatacttttaagagtgtaaaggaatcctgaccccaaaactttgagaactgctgCCTTCCCCTCCACTTT-CTTCCTTCCCTAGAATTTCTTCCTTGGAAGAAACATTCCTTTGCCATTCTATGTTAACTTACATAGTTCCACTGAGGCCAGTTTTGCTACCTCCCTCCCATCTTTCCACATCCCTCTCTTGACACAAAACCTGACCAAAGGACTCTACTGGCCCACCCCATTTCCAGTGATCAGCTGTCAGGTGGGCTAAGCCAAGAAAATCTGGGTTTTCCCTGAGACTAGACCTCTCTTTCTGGGAGATATGGAATCACAGGGACAAGATTGGCCACCTAGGGGTAGTCAGAATTCATCTTGCCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAATGCCAGACGGCTTTCTAGAAAGTCAAAGATAATTATACTTTCTGCCATGACTGTGAGAATGCCCAGTTCATTGCACACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGTACCTAGAAGAAAAAAAggct-gggtatggtggctcatgcctgtaatcccagtactttgggaggccaaggtgagtggatcacctgaggtcaggtgttcgagacaagcctggccaacacgatgaaactccacctctagt
i ponAbe2.chr15             I 1763 C 0
s nomLeu3.chr6              102200696 996 + 121039945 ------------------tatccacaatgatctaaaatggctatctgtatgaggttggcctttgttcaca-ttttttcaagaaaatatcacacaataaattgaatgcagaagcaaattgacatatcaatttgctaatgacatatcaaatgacatatcagacatcatgcaaatgacaaacatcaaagaaatttgcaaaagatgtaagattgtactactttgggtttagaaattttcttttcataaaagcatttataacaatatgtggtgagcttttaaagaatattttaaatatttctgatttaatttctagtgataaataccaatagatataacctacataaaccaaagctccttgggccctcaatatatttttaagagtgtaaaggaatcctgaccccaaaactaggagaactgctgccttcccctccactttccttccttccctAGAATTTCTTCCTTGGAAGAAACATCCCTTTGCCATTCTATATTAACTTACATAGTTCCATTGAGGCCAGTTTTGCTACCTCCCTCCCATCTTT--ACACCTCTCTCTCAACATAAAACCTGACCAAAGGATTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGTGCTAAGTGAAGCAAATCTGGGTTTTCCCTGAGACTAGACCTCTCTTTCTGGGAGAGATGGAATCACAGAGACAAGGTTGGCCACCTTGGGGTAGTGAGAATTCATCCTGCCTAAACAGGGAGAATTCAGACAAGTTTCTAGAAAGCCAAACTACTTTCTAGAAAGTCAAAGATAATTATATTTTTTGCCATGACTGTAAGAATGCCCATTTCATTGCATACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGTACTGAGATGAAAAAAATGCTGgggtacagtggctcacacctgtaatcccaatactttgggaggccgaggtggccaaatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaactccgtctttact
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106638078 955 - 171882078 --------gaaaaagaaaTATCCACAATGATCTAAAATGGCtatctgtatgacattggcctttgttcaaatttttttcaagcaaatatcacacaataaattgaatgcagaca--------------------------------caaatgacatac------------------caaacaccaaagaaatttgcaaaagat-taagattgtactactttgggtttagaaattttcttttcataaaagcatttataacaatatttggtgaacctttaaagaatattttgaatatttctgatttaatttctagtgataaataccagtagatatcacctacatacacaaaagctccttgggccctcaatatatttttaagagtgtaaaggtatcctgaccccaaaactttgagaactgctgTCTTCCCCTCCACTTT-CTTCCTTCCCTTGAATTTCTTCCTTGGAA-AAACATTCCTTTGCCATTCTACGTTAACTTATTTAGTTCAATTGAGGCCAGTTTTGCTACCTCTCTCCCGTCTTTCCACATCCTTCTCTTGACACAAAACCTGACCAAAGGAGTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGCAAATCTGAGTTTTCCCTGAGACTAGACCTCTCTTTCTGGGAGATATGGAACCACAAGGACAAGATGGGCCACCTTGGGGTAGTCAGAATTCATCTTGCCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAAAGCCAAACTGCTTTCTGGAAAGTCAAAGATAATTATACTTTCTGCCATGACTGTGAGAATGCACATTTCATTGCACACTTTCTAGTATTTTTACCAATCTGATAAGTAAAAGCTGGTACCTAGAAGAAAAAAAggcc-gggtgtggtggctcatgcctgtaatcccagcactttgggaggccaaggtgagtggatcacccaaggtcaggagctccagaccagcccggccaacatgatgaaaccccatctctact
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102531492 955 - 162156779 --------gaaaaagaaatatccacaaTGATCTAAAATGGCTGTCTGTATGACATTGGCCTTTGTTCAAAtttttttCAAGCAAATATCACACAATAAATTGAATGCAGACA--------------------------------CAAATGACATAC------------------CAAACAccaaagaaatttgcaaaagat-TAAGATTGTACTACTTTGGgtttggaaattttcttttcataaaagcaTTTATAACAATATTTGGTGAAcctttaaagaatattttgaatatttctgatttaatttctaGTGATAAATACCAGCAGATATCACCTACATACACAAAAGCTCCTTGGGCcctcaatatatttttaagagtgtaaaggaATCCTGACCCCAaaactttgagaactgctgtctTCCCCTccacttt-cttccttcccttgaaTTTCTTCCTTGGAA-AAACATTCCTTTGCCATTCTACGTTAACTTACTTAGTTCAATTGAGGCCAGTTTTGCTACCTCTCTCCTGTCTTTCCACATCCTTCTCTTGACACAAAACCTGACCAAAGGAGTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGCAAATCTGAGTTTTCCCTGAGACTAGACCTCTCTTTCTGGGAGATATGGAACCACAGGGACAAGATGGGCCACCTTGGGGTAGTCAAAATTCATCTTGCCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAAAGCCAAACTGCTTTCTGGAAAGTCAAAGATAATTatgctttctgccatgactgtgagaaTGCCCATTTCATTGCAcactttctaatatttttaccAATCTGATAAGTAAAAGCTGGtacctagaagaaaaaaaggcc-gggtgtggtggctcatgcctgtaatcccagcactttgggaggccaaggtgagtggatcacccaaggtcaggagctccagaccagcccggccaacatggtgaaaccccatctctact
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=124560.000000
s hg38.chr15_KI270850v1_alt    272479 75 +    430880 aaaaacacaaacattagccgggcatggtggcaggcccctgtaatc-ccaactactcgggaggctgaggcaagagga
s panTro4.chr15              80063080 75 +  99548318 aaaaacacaaacattagccgggcatggtggcaggcccctgtaatc-ccaactactcgggaggctgaggcaagagaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81539915 75 +  99152023 aaaaacacaaaaattagctgggcatggtggcaggcacctgtaatc-ccaactactcgggaggctgaggcaagagaa
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102201692 75 + 121039945 aaaaatacaaaaattagccaggcatggtggcatgcgcctgtaatc-tcagctacttgggaggctgaggcaggagaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106639033 75 - 171882078 aaaaatacaaaaattagccaggcatggtggcaggctcctgtaatc-cctgctactcgggaggctgaggcaggagaa
i macFas5.chr7              C 0 I 2310
s papAnu2.chr7              102532447 75 - 162156779 aaaaatacaaaaattagccaggcatggtggcaggctcctgtaatc-cctgctactcgggaggctgaggcaggagaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               3871282 76 +  24206276 aaaaatacaaaaattagccaggcatggtggcacgcacctgcacgcaccagctacttgggaggccgaggcaggagaa
i chlSab2.chr29             I 51482 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I

a score=2217528.000000
s hg38.chr15_KI270850v1_alt    272554 1433 +    430880 tcacttgaacctgggaggtggaggttttagtgagccaagatcatgccattgccctccagcctgggtgacaag-ctgagactttgtctcaa---aaaaaaaaaaaaaaa-------------aaaaaGTTTCCATACAATATAATTTGTTCCATCTCTAAAAACCAATTCAGCAAT---AACTGAAAGCCACCACTTGGAAGGTTTCAAGGATTTAGCTCTACCTGTTGATGATGTCCAAAGCATTAGTTAAGGTAGAAAAAAA-ATacacacacacacacacacacacacacaca----------------------------cacacTCACCCCTATGTAGTCAGTACCAGGAAACACGAAAGACTAGATGGTACAGTCATCCAACACAAAGCACACAATAACTGAAGGCACTGTAGAGGAGTAACTTATGACACAGATCTACAATATTG---AGTGAAAATGCAGATTAC-AAAAAAAAAATCTGATTTTT-TAAGGGAGAGGGAACACATACAAGCAAAGGAGAAAAGAGATGAGCAGATGAC-T-GAAAGATACAAAATTCTGATAGTGGTACATTCTGAGTGGT-AGAAT--TATCAGTATTATTTTCTAGTTTTGCCTAAAAATTTTCTAAATTTCT-----TAAG--AACTTTTTGTTATCCATATTATCAAATATCCATCACCCCAGGAAACTTAACCTTGAGCACAAACTCTACAACAAGTTCAATGTTTGTTCAGTTTAATATTTAAGAGACAACCTATTTTGAAAGACATCTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTTTCAATCATATCCTTCACATTTTGTAATTTTGATAAGGTTAAGCTTTAGATCCATCTTGAAAAGATAAGCTTTCTGTTTGTCTTTAAAATATGACCCACAATATGCCTGTTTTTAAACAGTGAATGATGCTCTAAAATCACAATATAAATTCAGGCAGTGCTCCTTACATGGAAAGTTTAAGTACTTCTAACACTG-CTCTTTTTCACTTGTTATGAAAACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCAATCTATTAGTTTTATAGTAATTTTAGGGCCTGTGAGGATGAAGCTGTCTGTGACAGCTACCACAAAGGTTACTATAGGTGGACAAATTTCAAACAAGTTTATCACCACTACCATCCCCACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAATATTAGCCAAGACAACCTCTTTACCTGTCACTGCTTAAGAAAAGGA-TTTTTGGTCTTATTTAGAAATAACTTTCCGTACCTATTTTTCTCCATAAATCCACTGAGACCAATGTGTGGCTCTATCGCAAGCACCAGCAAGCAAAACTGCCTGCTAGAAGGTTCAGTTTTTGTATCTTTCCAAATGTAGAACACAGCTATCTTCAAGGATTTCATAATTTTTTGAAAATTGATGCACAAA---CTTCTTGAAAG
s panTro4.chr15              80063155 1413 +  99548318 tcacttgaacctgggaggtggaggttgtagtgagccaagatcatgccattgccctccagcctgggtgacaag-gtgagactttgtctcaa---aaaaaaaaaaaaaaa------------------GTTTCCATACAATATAATTTGTTCCATCTCTAAAAACCAATTCAGCAAT---AACTGAAAGCCACCACTTGGAAGGTTTCAAGGATTTAGCTCTACCTGTTGATG---TCCAAAGCATTAGTTAAGGTAGAAAAAAA-ATACACACACACACACACACTC------------------------------------------TCACCCCTATGTAGTCTGTACCAGGAAACACGAAAGACTAGatggtacagtcatccaacacaaagcacacaataactgaaggcactgtagaggaataacttatgacacagatctacaatattgttgagtgaaaatgcagattac-aaaaaaaaa-tctgattatt-taagggagagggaacacatacaagcaaaggagaaaagagatgagcagatgac-t-gaaagatacaaaattctgatagtggtacattctgagtggt-agaat--tatcagtattattttctagttttgcctaaaaattttctaaatttct-----taag--aactttttGTTATCCATATTATCAAATATCCATCACCCCAGGAAACTTAACCTTGAGCACAAACTCTACAA---GTTCAATGTTTGTTCAGTTTAATATTTAAGAGACAACCTATTTTGAAAGACATCTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTTTCAATCATATCCTTCACATTTTGTAATTTTGATAAGGTTAAGCTTTAGATCCATCTTGAAAAGATAAGTTTTCTATTTGTCTTTAAAATACGACCCACAATATGCCTGTTTTTAAACAGTGAATGATGCTCTAAAATCACAATATAAATTCAGGCAGTGCTCCTTACATGGAATGTTTAAGTACTTCTAACACTG-CTCTTTTTCACTTGTTATGAAAACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCATTCTATTAGTTTTATAGTAATTTTAGGGCCTGTGAGGATGAAGCTGTCTGTGACAGCTACCACAAAGCTTACTATAGGTGGACAAATTTCAAACAAGTTTATCACCACTACCATCCCCACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAATATTAGCCAAGACAACCCCTTTACCTGTCACTGCTTAAGAAAAGGA-TTTTTGGTCTTATTTAGAAATAACTTTCTGTACCTATTTTTCTCCACAAATCCACTGAGACCAATGTGTGGCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTGCTAGAAGGTTCAGTTTTTGTATCTTTCCAAATGTAGAACACAGCTATCTTCAGGGATTTCATAATTTTTTGAAAATTGATGCACAAACTTCTTCTTGGAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81539990 1453 +  99152023 tcacttgaacctgggaggtggaggttgtagtgagccaagatcatgccattgccctccagcctgggcgacaag-gtgagactttgtctcaa---aaaaaaaaaaa----------------------GTTTCCATACAATATAGTTTGTTCCATCTCTAAAAACCAATTCAGCAAT---AACTGAAAGCCACCACTTGGAAGGTTTCAAGGATTTAGCTCTACCTGTTGATG---TCCAAAGCATTAGTTAAGGTAGAAAAAAA-ATacacacacacacacacacacacacacacactctctctctctctctcgctctctctctctctctcACCCCTGTGTAGTCAGTACCAGGAAACACGAAAGACTAGATGGTACAGTCATCCAACACAAAGCACACAATAACTGAAGGCACTGTAGAGGAGTAACTTATGACACAGATCTACAATATTGTTGAGTGAAAATGCAGATTAC-AAAAAAAAA-TCTGATTTTT-TAAGGGAGAAGGAACACATACAAGCAAAGGAGAAAAGAGATGAGCAGATGAC-T-GAAAGATACAAAATTCTGATAGTAGTACATTCTGAATGGTAAGAAT--TATCGGTATTATTTTCTAGTTTTGCCTAAAAATTTTCTAAATTTCT-----TAAAATAAGTTTTTGTTATTCATATTAT-AAATATCCATCACCCCAGGAAACTTAACCTTGAGCACAAACTCTACAACATGTTCAATGTTGGTACGGTTTAATATTTAAGAGACAACCTATTTTGAAAGACATCTAAAATGATGACCAATATTTAAATCTATGCATTAATATTTTTCAATCATATCCTTTACATTTTGTAATTTTGATAAGGTTAAGCTTTATATCCATCTTGAAAAGATAAGTTTTCTATTTGTCTTTAAAATATGACCCACAATATGCCTGTTTTTAAACAGTGAATGATGCTCTAAAATCACAATATAAATTCAGGCAGTGTTCCTTACGTGGAATGTTTAAGTACTTCTAACACTG-CTCTTTTTCACCGGTTATGAAAACACAGAACAAT----TAAGCATCCAATTATTCAGGTCCTTTGTTTCTCTTCCATTCTATTAGTTTTATAGTAATTTTAGGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATAGGCGGACAAATTTCAAACAAGTTTATCACCACTACCATCCCCACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGGTTAGCCAAGACAACCTCTTTACCTGTCACTACTTAAGAAAAGGATTTTTTGGTCTTATTTAGAAATAACTTTCTGTACTTATTTTTCTCCATAAATCCACTGAGACCAATGTGTGGCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTGCTAGAAGGTTCAGTTTTTGTATCTTTCCAAATGTAGAACACAGCTATCTTCAGGGATTTCATAATTTTTTGAAAATTGATGCACAAACTTCTTCTTGAAAG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102201767 1442 + 121039945 ttgcttgaacccaggaggtggaggttgcagtgagctgagatcatgccattgcactccagcctgggcgacaagaacaagacttcatctcaa---aaaaaaaaaaaaaaaaaaaagaaaagaaaaaaaGTTCCCATACAATATAATTTCTCCCATCTCTAGAAACAAATTCAGCAATGAGAACTGAAAGTCACCACGTGGAAGGTTTCAAGGATTTAGGTCTACCTATTGATA---TCTAAAGCATTAGTTAACGTAGAAAGAAATatacatacacgcacgcacacacacgtacaca----------------------------------tacccataTGTATTCAGTACCAGAAAACATGACGGACTACATGGTACAGTCATCCAACAGAAAGCACACACTAACTGAAGGCAATGGAGAGGAGTAAGTTATAGCATGGATCTACAATACTGCTGAGTGAAAAAGCAGATTAC-AAACAAATA-TCTGATT-TT-TAAGGGAGAGGAAACATATACAAGCATAGGAGAAAAGAGATGAGCAGCTGAC-TGGAAAGATACAAATTTCTGACAGTGGAACTTTCTGAGTGGT-AGAATTATATAGGTAATATTTTCTAGTTTTGCCTAAAAGTTTTCTAAATTTCT-----TAAAATAAGGCTTTGTTTTACATATTATAAAATATCCATCACCCCAGGAAATTTAACCTTCAGCACAAACTCAACATTATGTTCAAAGTTTGTTCAGTTTAATATTTAAGAGACAATCTATTTTGAAAGACATCTAAA---ATGACCAATATTTAAACCTATGCATTAATATTTTTCAATCACATGCTTTAAATTTTGTAATTTTGATAAGGTTAAACTTTAGATCCATCTTGAAAAGATAAATTTTCTATTTGTCTTTAAAATATTACCTACAATATGCCTGTTTTTAAACAGTGAATGGTGCTCAAAAATTGCAATATAAATTCAGGCAGTGTTCCTTACATAGAATGT----GTGCTTCTAATACTG-CTCTTTTTCACTGGTTATGAAAACACAGAACAATTATCTAAGCATCTAATTATTCAGGACCTTTGTTTCTCCTCTATTCTGTTAGTTTTATACTAATTTCAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATAAGCAGACAAATTTCCAACAAGTTTATCACCACTACCATCCCCACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGGTTAGCCAAGACAACCTCTTTACCTGTCACTGCTTAAGAAAAGGATTTTTGGGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCATAAATCCACTGAGACCAATGTGTGCCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTGCCAGTATGTTCAGTTTTTGTATCTTTCCAAATGTAGGGCACAGCTATTTTT---GATAACATAATTTTTTGAAAACTGATGCACAAACTTCTTCTGGAAAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65373133 1424 + 171882078 tcacttgaacccgggaggcggaggttgcagtgagctgtgatcacgccattgcactccagcctgggagacaagaacaagacttcatctcaaaaaaaaaaggaaaaaaaa------------------GTTCCCATACAATATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAATTGAAAGTCACCACGTGGAAGGTTTCAAGGATTTAGGTCTACCTATTGATG---TCTAAAGCATTAGTTAAGTTAGAAAAAAATACGCGcacacacgcgcacgcacacacacaca----------------------------------tacCCCTATGTATTCAGTACCAGGAAACATGACTGACTGCATGGTACAGTCATCCAACAGAAAGCACACAATAACTGAAGCCAATGTAGAGAAGCAAGTTATGACGTGGATCTACAATATTGTTGAGTGAAAAAGCAGATTAC-AAACAAAAA-TCTGATT-TT-TAAGGGAGAGGAAACATACACAAGCATAGGAGAAAAGAGATGAGCAGATGACTTGGAAAGATACAAATTTCTGATAGTGGCACCTTCTGAGTGGT-AGAATTATATAGGTAATATTTTCTAGTTTTGCCTAAAAAATTGCTGAATTTCT-----TAAG--AAGGTTTTGCTTTCCATATTATAAAATAGCCATCACCCCGGGAAATTTAGCCTTCAGCACAAACTCTACATAGTGTTCAAAATTTGTTAAGTTTAAGAGTCAA-------CCTATTTTGAAAGACATTTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTTTCAATCACATGCTTTAAATTTTGTAATTTTGATAAGGTTAAGCTTTAGATCCATCTTGAAAAGATAAGTGTTCTATTTGTCTTTAAAATATGACCTACAATATGCCAGCTTTTAAACAGTGAATGGTGCTCAAAAATCGCAATATAAATTCAGGCAGTATTCCTTACATAGAATGTGTAATTGCTTCTAATACTGCTTTTTTTTCACCAGTTATGAAA--ACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTTCTCCATTCTGTTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGTTACCACAAAGGTTACTATAAGCAGACAAATTTCAAACAAGTTTATCACCGCTACCATCCCCACCATAAAACTGTCTTAATCAAGGGCAACACAATTCAAGGTTAGCCAAGACAACCTCTTTACCTGTCACTGTTTAAGAAAAGGATTTTTGGGTCTTATTTAGAAGTAACTTTCTGTATCTATTTTTCTCCATAAATCCACTGAGATCAATGTGTGGCTCTATCTCGAGCATCAGCAAGCAAAACTGCCTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAATATAAGACACAGCTATCTTCAGGGATTTCGTATTA-TTTGAAAACTGATGCACAAACTTC---TTGAAAG
i macFas5.chr7              I 87 C 0
s papAnu2.chr7              102532522 1395 - 162156779 tcacttgaatctgggaggcagtggttgtagtgagccaagatcatgccactgcactcgagcctgggtgacaagagtgagactttatctcaa----------aaaacaaa------------------ttttccatACAATATAATTTGCTCCATGTCTAGAAACCAATTCAGCAATGAGAACTGAAAGCC-CCACTTGGAAGGTTTCAAGGATTTAGCTCTACCTATGGATG---TCCAAA-CATTAgttaaggtagaaaaaaa------aaaatacacacacacacacacacact----------------------------------cacccctATGTATTCAGTACCAGGAAACACAA-TGACTAGACGGTACAGTTATCCAACACAAAGCACACAATAACTGAAGGCACTGTAGAGGAGTAACTTCTGACACAGATCTACAATATTGTTGAGTGAAAAAgcagattacaaaaaaaaaa-tctgatt-ttgtaAGGGAGAGGGAACACATACAAGCACAGGAGAAAAGAGATGAGCAGAGgac-tggaaaaatacaaaattctcaTGGTGGCACATTCTGAGTGGT-AGAAC--TATTGGTATGATTTTCTAGTTTTGCctaaaaattttctaaacttcttaaaataag--aagTTTTTGTTATCCATATTATAAAATATCCATCACCCCAGGAAATTTAACCTTGAGCACAAAC--------ATGTTCAATGTTTGTTCagtttaatatttaa---------------gaaagacaTCTAAAATGATGACTAATATTTAAACCtatgcattaatatttttcaataatatgctttacattttgtaattttgataagGTTAAACTTTATATCCATCTTGAAAAGATaagttttctatttgtctttaaaatatgacCCACAATATGCCTGTTTTTAAACAGTGAATGATGCTCAAAAATCGCAATATAAATTCAGGCAGTGTTCCTTACATGGAATGTTTAAGGGTTTCTAACACTG-TTCTTTTTCACCGgttatgaaaacacagaacaattATCTACACATCTAATAATTCAGGTCCTTTGTTTCTCCTCCATTCTATTAGTTTTATAGTAATTGTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGTTACCACAAAGGTTACTATAAGCAGACAAATTTCAAACAGG-TTATCACCACTACCATCCCCACCATACAACTGTCTCAATCAAGGGCAACACAATTCAAGGTTAGCCAAGACAACTTCTTTACCTGTCACTgcttaagaaaagaattttttgctcttatttagaaataactttctgtatctatttttctCCACAAATCCACTGAGACCAAGGTGTGGCTCTATCTCAAGCACCAGTAGGCAAAACTGCCTGCCAGTATGTTCAGTTTCTGTATCTTTCCAAATGTGCGGCACAGCTATCTTT--TGATATCATAATGTTttgaaaactgaagcacaaacTTCTTATTGAAAG
i papAnu2.chr7              C 0 I 299
s chlSab2.chr29               3871358 1418 +  24206276 tcgcttgaacccaggaggcagaggttccagtaagctgtgatcacaccattgcactccagcctgggagacaagaacaagacttcacctcaa---aaaaaaggaaaaaaa------------------GTTCCCATACAACATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAACTGAAAGTCACCATGTGGAAGGTTTCAAGGATGTAGGTCTACCTACTGATG---TCTAAAGCACTAGTTAAGTTAGAAAAAACTacgcacacacacgcgcacgcacacacacaca----------------------------------cacCCCTATGTATTCAGTACCAGGAAACATGACTGACTACACGGTACAGTCATCCAACAGAAAGCACACAATAACTGAAGCCAATGGAGAG----AAATTATGATGTGGATCTACAATATTGTTGAGTGAAAAAGCAGATTAC-AAACAAAAA-TCTGATT-TT-TAAGGGAGAGGAAACATACACGAGCATAGGAGAAAAGAGATGAGCAGATGACTTGGAAAGATACAAATTTCTGAT-GCGGCACCTTCTGAGTGAT-AGAATTATATAGGTAATATTTTCTAGTTTTGCCTAAAAAATTGCTAAATTTCT-----TAAG--AAGGTTTTGCTTTCCATATTATAAAATAGCTATCACCCCAGGAAATGTAACCTTCAGCACAAACTCTACATAGTGTTCAAAATTTGTTCAGTTTAAGAGTCAA-------CCTATTTTGAAAGACATTTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTTTCAATCACATGCTTTACATTTTGTAATTTTGATAAGGTTAAGCTTTATATCCATCTTGAAAAGATATGTGTTCTATTTGTCTTTAAAATATGACCTACAATATGTCAGCTTTCAAACAGTGAATGGTGCTCAAAAATCGCAATATAAATTCAGGCAGTGTTCCTTACATAGAATGTGTAATTGCTTCTAATACTG-CTCTTTTTCACCAGTTATGAAA--ACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCATTCTATTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGTTACCACAAAGGTTACTATAAGCAGACAAATTTCAAACAAGTTTGTCACCGCTACCATCCACACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGGTTAGCCAAGACAACCTCTTTACCTGTCACTGTTTAAGAAAAGGATTTTTTGGTCTTATTTAGAAGTAACTTTCTGTATCTATTTTCCTCCATAAATCCACTGAGATCAATGTGTGGCTCTATCTCGAGCATCAGCAAGCAAAACTGCCTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAATATAGGACACAGCTATCTTCAGGGATTTCGTATTA-TTTGAAAACTGATGCACAAACTTCTTCTTGAAAG
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I

a score=7833.000000
s hg38.chr15_KI270850v1_alt    273987 4 +    430880 TTCA
s panTro4.chr15              80064568 4 +  99548318 TTCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81541443 4 +  99152023 TTCA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102203209 4 + 121039945 TTCA
i nomLeu3.chr6              C 0 I 300
s macFas5.chr7               65374557 4 + 171882078 TTCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102534216 4 - 162156779 ttca
i papAnu2.chr7              I 299 C 0
s chlSab2.chr29               3872776 4 +  24206276 TTCA
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556 0 -  40214260 I

a score=94940.000000
s hg38.chr15_KI270850v1_alt    273991 58 +    430880 GAGACACAGCAGCTGTAATTATTCTGAAGGCTGGTTACGGGACACATTACCTTCATAC
s panTro4.chr15              80064572 58 +  99548318 GAGATACAGCAGCTGTAATTCTTCTGAAGGCTGGTTATGGGACGCATTACCTTCATAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81541447 58 +  99152023 GAGATACAGCAGCTGTAATTCTTCTGAAGGCTGGTTATGCGATGCATTACCTTCATAC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102203513 58 + 121039945 GATATACAGCAGTTGTAATTCTTCTGAAGGCTGCTTATGGAACACATTACTTTCATAC
i nomLeu3.chr6              I 300 C 0
s macFas5.chr7               65374561 58 + 171882078 GAGATAAAGCAGTTATGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102534220 58 - 162156779 gatgTACAGCAGCTGTAATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCATAC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               3872780 58 +  24206276 GAGATAAAGCAGTTGTGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i chlSab2.chr29             C 0 I 13
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I

a score=16054.000000
s hg38.chr15_KI270850v1_alt    274049 14 +    430880 TTTGCTGTTTAAGA
s panTro4.chr15              80064630 14 +  99548318 TTTGCTGTTCAAGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81541505 14 +  99152023 TTTACTGTTCAATA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102203571 14 + 121039945 TTTGCTGTTCAATA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65374619 14 + 171882078 TTTGCTGTTCAATA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102534278 14 - 162156779 TTTGTTGTTCAATA
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr29               3872838 13 +  24206276 I

a score=748192.000000
s hg38.chr15_KI270850v1_alt    274063 499 +    430880 AATGTGGGGTGGAGAATCAAGTAAACTGATAGAATTTCCAT-----ATAAAATTCTAAGTGCTCTGAGAACAAAAGAAACTTAAAAT------acacacacacacacacacacacacacacaca--------------cacGGTTTTCCCTACTAATCATTTTA-AACTAAACAACCAAGTTGCTAAACCAGAGCCCACAAAAGCAGAGTCAAAGTTCTAACACTTGGTAAAAGAAAAATGCACACATACCCCTGTGAGCT--AAAAAAAAAATGCTTAAGTATTCAA----AGACAGCAATTACAGCTACTGAGAACATCACTGTAAGCAAACTGAGGCAGAGAAAACAAACGTGCTGATGAGGATTTGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAGTTGGCATTATCTTTCAGAACAATCTTCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCA-----------------CTGTGGCTCTCCAGTCATGCTTTACA
s panTro4.chr15              80064644 511 +  99548318 AATGTGGGGTGGAGAATCAAGTAAATTGATAGAATTTCCAT-----ATAAAATTCTAAGTGCTCTGAGAACAAAAGAAACTTAAAAT------acacacacacacacacatacacacacacacacacacacac-----CACGGTTTTCCCTACTAATCATTTTATAACTAAACAACCAAGTTGCTAAACCAGAGCCCACAAAAGCAGAGTCAAAGTTCTAACACTTGGTAAAAGAAAAATGCACACATACCCCTGTGAGCTAAAAAAAAAAAATGCTTAAGTATTCAA----AGACAGCAATTACAGCTACTGAGAACATCACTGTAAGCAAACTGAGGCAGAGAAAACAAACGTGCTGATGAGGATTTGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAGTTGGCATTATCTTTCAGAACAATCTTCTAGAAGAGATCACATAATACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCA-----------------CTGTGGCTCTCCAGTCATGCTTTACA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81541519 515 +  99152023 AATGTGGGGTGGAGAATCAAGTAAACTGACAGAATTTCCAT-----ATAAAATTCTAAGTGCTCTGACAACAAAAGAAACTTAAAAT------acacacacacacacacacacacacacacacacacacacacacacacacGGTTTTCCCTGCTAATCATTTTACAACTAAACAACCAAGTTGCTAACCCAGAGCCCACAAAAGCAGAGTCAAAGTTCTACCACTTGGTAAAAGAAAAATGGATACACACCCCTGTGAGCT-----AAAAAAATGCTTAAGTATTCAAAGACAGACAGCAATTACAGCTACTGAGAACATCATTGTAAGCAAACTGAGGCAGAGAAAACAAAGGTGCTGATGAGGATTTGAACCACCTAAGCTGCAGAAATCCACTGGATGGTTTCCTAGGTTCCGAGTTGGCATTATCTTTCAGAACGATCTTCTAGAAGACATCACATAACACTGTTACAAAGGATCTGGAGAAACGGACCCCGGCTTCATCA-----------------CTGTGACTCTCCAGTCATGCTTTACA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102203585 438 + 121039945 AATGTGGGATGGAGAATAAAGCAAATTGGCAGAATTACCATATAAAATAAAATTCGAAGTCCTCCGACAACAAAAGAAACTTAAAAT------acacacatacacacacacacg------------------------cacaGTTTTCCCTGCTAATCATTTTA-----CAACAACCAAGTAGCTAACCCAGAGACCACAAAAGCAGAGTAAAAATTCTAACACTTGGTAAAATAAAAATGCACATATATCCCTGTCATCT-----AAAAATATGCTTAAGTATTCAAAGACAGACAGCAATTACAGCTACTGAGAACATCACTGTAAGCAAACTGAGGCAGAGAAAACAAAGGTGCTGATGAGGATTTGAACCACCTAAGCTGCAGAAACCCACTAGATGGTTTCCTAGGTCCCGAGTAGGCATTATCTTTCAGAACGATCTTCTAGAA-----------------------------------------------------CA-----------------CTCTGGGTCTCCAGTCATGCTTTACA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65374633 501 + 171882078 AACGTGGGGTGGAGAATCAAGTAAACTGACAGAATTTCCAT-----ATAAAATTCTAAGTGCTCTGACAACAAAATCAACTTAAAAT----------acacacacacacacacacacacacaca--------------cacGTTTTTCCCTGCTAACCATTTTACAACTAAACAACCAAGTTGCTGACCCAGAGCCCACAAAAGGAGGGTCAAAGTTCTAACACTTGGTAAAATTAAAATGCATACATACCTGTGTGAGCT-AAAAAAAAAAAAGCTTAAGTATTCAAAGACAGACAGCAATTACAGCTACTGAGAACATCATTGTAAGCAAACTGAGGCAGAGAAAACCAACATGCTGAAGAGGATTTGAACCACCTAAGCTGCAGAAACCCGCTGGATGGTTTCCTAGGTTCCGAGCTGGCATTATCTTTCGGGATGATCTTCTAGAAGAGATCACATAACACTGTTACAAAGGCTCTGGAGAAAGGGACCCTGGCTTCATCA-----------------CTCTGGCTCTCCAGGCATGCTTTACA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              102534292 522 - 162156779 AATGTGGGGTGGAGAATAAAGTAAATTGTCAGAATtaccatataaaataaaattctaagtcctctgacaacaaaagaaacttaaaatacacacacacacacacacacacacacacacacacaca--------------cacggttttcC---CTAATCATTTTACAACTAAACAACCAATAAGCTAACCCAGAGCCCACAAAAGTAGAGTAAAAATTCTATctcttgataaaataaaaatgcacatatatCCCTGTCATCT-----aaaaaaaTGCTTAAGGATTCAA----AGACAGCAATTATAGCTACTGAGAACATCATTGTAAGCAAACTAAGGCAGAGAAAACAACAGTGCTGATGAGGATTTGAACCACCTAACCTGCAGAAACCCACTAGATGGTTTCCTAGGTTCCAAGTTGGCATTATCTTTCAGAACGATCTTCTAGAAAAGATTACATAACACTGTTACAAAGGATCTGGGGAAAGGGATGCTGGCTTGATAAAGCCAGCTGGCTTGATGCTCTGGCTCTCTAGTCATGCTTTACA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               3872851 492 +  24206276 AATGTGGGGTGGAGAAGCAAATAAACTGACAGAATTTCCAT-----ATAAAATTCTAAGTGCTCTGACAACAAAATCAACTTAAAAT----------------acagacacacacacacacaca--------------cacGTTTTGCCCTGCTAACCATTTTACAACTAAACAACCAAGTTGCTGACCCAGAGCCCACAAAAGAAGGGTCAAAGTTCTAACACTTGGTAAAATAAAAATGCATACATACCTGTGTGAGCT----AAAAGAAATGCTTAAGTATTCAAAGACAGACAGCAATTACTGCTACTGAGAACATCATTGGAAGCAAACTGAGGCAGAGAAAACCAACATGCTGAAGAGGAGTTGAACCACCTAACCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAGCTGGCATTATCTTTCGGGATGATCTTCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGAAGAAAGGGACCCTGGCTTTATCA-----------------CTCTGGCTCTCCAGTCATGCTTTACA
i chlSab2.chr29             I 13 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I

a score=418169.000000
s hg38.chr15_KI270850v1_alt    274562 355 +    430880 TTTGGCAGTGACTATCTCCATTCAACTCAATTCCCTAACCCTGAACTAGCTGACATTTATCAAATACTGCCCTTTACCAGGTCTAAGTAAGTTTAACT---CCCCCCACCCCCACC-----AAAAAAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAACCTGTCTCCTCTTCATATACCTGTTCCTTTCAAGGAAGGGTATAAAAATGGGGATGAGGGAGGAT----AACCACTAGGAATTTGACCCTATATTATAAATTGGTCAGATAAATGAA---A---ATAATTCCTCTGGACTCAAAGtgatatggctctgaaaacgggagaaacatcggggtcctttgtctcacgccagttaaacga
s panTro4.chr15              80065155 354 +  99548318 TTTGGCAGTGACTATCTCCATTCAACTCAATTCCCTAACCCTAAACTAGCTGACATGTATCAAATACTGCCCTTTACCAGGTCTAAGTAAGTTTAACT---CCCCCGACTCCCACC------AAAAAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAACCTGTGTCCTCTTCATATACCTGTTCCTTTCAAGGAAGGCTATAAAAATGGGGATGAGGGAGGAT----AACCACTAGGAATTTGACTCTATATTATAAATTGGTCAGATAAATGAA---A---ATAATTCCTCTGGACTCAAAGtgatatggctctgaaaacgggagaaacatcggggtcctttgtctcacgccagttaaacga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81542034 363 +  99152023 TTTGGCAGTGACTATCTCCATTCAACTCAATTCCCTAACCCTAAACTAGCTGACATTTATCAAATACTGCCCTTTACCAGGTCTAAGTAAGTTTAACT---CCCCCCACCCCACCCCCCCACAAAAAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAACCTGTCTCCTCTTCATATATCTGTTCCTTTCAAGGAAGGGCATAAAAATGGGGATGAGGGAGGAT----AACCACTAGGAATTTGACTCTATATTATAAATTGGTCAGATAAATGAAAACA---ATAATTCCTCTGGACTAAAAGtgatatggctctgatgactggagaaacatcggggtcctttgtctcatgccagttaaacga
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7               65375134 359 + 171882078 TTTGGCAGTGACTATCTCCAGTCAACTCAATTCCCTACCCCTCAACTAGCTGACATTTATCAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTAACTGTGCCCCCCACACTAA--------GAAAAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAACATGTATCTTCTTCATATATATGTTCCTTTCAAGGAAGGGTACAAAAATGGGGATGAGGGAGGATAGACAACCACTATGAATTTGACCCTATATTATAAATCGGTCAGATAAATGAA---A---ACGATTCCTCTGGACTGAAATtgatatggctctgatgactggagaaacatcagggtccttgggctcacatcagttaaacaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59687913 358 + 162156779 TTTGGCAGTGACTATCCCCAGTCAACTCAATTCCCTACCCCTCAACTAGCTGACATTTATCAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTAACGGTGCCCCCcacactaa--------gaaaaaaatcaagatactAAGGGATATACTATTCACAAAAGGGAAACATGTATCTTCTTCATATATATGTTCCTTTCAAGGAAGGGTACAAAAATGGGGATGAGGGAGGATAGACAACCACTATGAATTTGACCCTATATTATAAATCGGTCAGATAAATGAA---A---ACGATTCCTCGGGACTGAAATTGATATGGCTCTGATGACTGGAGAAACAT-GGGGTCCTTCGGCTCACACCAGTTAAACAA
i papAnu2.chr7              I 45191 C 0
s chlSab2.chr29               3873343 361 +  24206276 TTTGGCAGTGACTATCTCCGGTCAACTCAATTCCCTACCCCTCAACTAGCTGACA-TTATCAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTATCTGTGCCCCCCACACTAA--------GAAAAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAACATGTATCTTCTTCATATATATGTTTCTTTCAAGGAAGGGTACAAAAATGGGGATGAGGGAGGATAGACAACCACTATGAATTTGACCCTATATTATAAATCGGTCAGATAAATGAA---AACGACGATTCCTCGGGACTGAAATtgatatggctctgatgactggagaaacatcggggtccttcggctcacaccagttaaacga
i chlSab2.chr29             C 0 I 1402
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e nomLeu3.chr6              102204023   0 + 121039945 C

a score=1333796.000000
s hg38.chr15_KI270850v1_alt    274917 1652 +    430880 catggacacacaggagtggttttaaggagcagaaagtttaatagacaagaaagaagaaaggctccctgcggtacagaaaaa--gggggtctgaacagagaaaaagccccgtgtgtggcagaacagtactcggttatattgggaggctggaggaggtggtgtctgatttgcacagggcccagggcattggtttgaccaggcaggtcattcatgtagcccgagaaaaacgtggccctcccaccctagccttttaatatgcaaatgtaggtcaccatgttgtcctgcacacatggggtcatctggaggtgtcaccttgaggtggtgactagaagaagagggtgggaatctccatgttgaatggacacagtttctaagcgctggcatttgcatatcaaagcttgGCAgcctgtagtcccagctactcaggaggctgaggcaggagattcacttgaacctgggaggcagaggctgcagtgagctgagatcacaccactgcactccagcctgggtgacagagcgagattccgtctcc-aaaaaaaagataaaaagaaaagaaaaagaaatgtttctggagttgtttctattaaaagggaaagccttactgaggcctccttaccctctctatctgcctagtataatttctgaataactcctCTATTA-AAAGTACCACTGAGGTGCTTAATATGACATTTCTGATATTTCCCAATGCTCCTCCACAAATTCAATTTGGAAAGGTAATCTGTTCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGCTTGTTTCTTTCCTTTGTACAAGCT------GACTACTTTTTAATCATAGTAAAAATGAG-AAAAATGCAAGATGAAGTTAACAGCATTGCTTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAAACTGTTATTCAGCCACAAATGACACCATCACTTTTTTATTCATAGGGCACAGTATCGCTGCCAAAGAGCTTTCCTCTATATGCTCTCTTGCAGGGCAAAAAATATTATCTATGTTATACAGAAACACAGTAAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTACTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTGGTATCTTGTTGTTGGGGTAGGCACTTTTTGGCAATAATGAATAGACATTTAATTAGCCAATC-AAAAAAA---CTtattaggtacagtaagttcctcttcaaaggtttaacctgttcaacttccttgttctttgttcctaagaacaatttccctgtaccttctcacccctatttacctgcttagttatctgctcagttacctgccttgtaaacaactcttcccatcagtcccaacctgtaactcacattccctctcccttccttattagggagaatattcgcgatagcaaatcaagtctgcttagattgtgtagtccgactccagcccatgtgggaatgacagagaggtagggactgcgttagggat-ataaactcctgctctat------cccgctcggtgtgctcttgcattcgtgactaatgcaaacagcagtcttttgcagaagtaagttgtcttgctgagaaaact-ttttttcctgagtgctggttcttccttgcagcactgatcatttgtttct
s panTro4.chr15              80065509 1653 +  99548318 catggacacacaggagtggttttaaggagcagaaagtttaataggcaagaaagaagaaaggctccctgcagtacagaaaaag-gggggtctgaacagagaaaaagccccgtgtgtggcagaacagtactcggttatattgggaggctggaggaggtggtgtctgatgtgcacagggcccagggcattggtttgaccaggcaggtcattcatgtagcccgagaaaaacgtggccctcccaccctagccttttaatatgcaaatgtaggtcaccatgttgtcctgcacacgtggggtcatctggaggtgtcaccttgaggtggtgactagaagaagagggtgggaatctccatgttgaatggacacagtttctaagcactggtatttgcatatcaaagcttgGCAgcctgtagtcccagctactcaggaggctgaggcaggagattcacttgaacctgggaggcagaggctgcagtgagctgagatcacaccactgcactccagcctgggtgacagagcgagactccgtctcc-aaaaaaaagataaaaagaaaagaaaaagaaatgtttctggagttgtttctattaaaaaggaaagccttactgaggcctccttaccctctctatctgcctagtataatttctgaataactcctCTATTA-AAAGTACCACTGAGGTGCTTAATATGACAGTTCTGATATTTCCCAATGCTCCTCCACAAATTCAATTTGGAAAGGTAATCTGTTCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTTCTTTCCTTTGTACAAGCT------GACTACTTTTTAATCATAGTAAAAATGAG-AAAAATGCAAGATGAAGTTAACAGCATTGCTTTATTTCCCATGAAAAGCTGTCATAAAGCATTCTCAAAATAAACTGTTATTCAGCCACAAATGACACCATCACTTTTTTATTCATAGGGCACAGTATCGCTGCCAAAGAGCTTTCCTCTATATGCTCTCTTGCAGGGCAAAAAATATTATCTATGTTATACAGAAACACAAT-AAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTACTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTGGTATCTTGTTGTTGGGGTAGGCACTTTTTGGCAATAATGAATAGACATTTAATTAGCCAATCAAAAAAAA---CTtattaggtacagtaagttcctcttcaaaggtttaacctgttcaacttccttgttctttgttcctaagaacaatttccctgtaccttctcacccctatttacctgcttagttatctgctcagttacctgccttgtaaacaactcttcccgtcagtcccaacctgtaactcacattccctctcccttccttattagggagaatattcgccatagcaaatcaggtctgcttagattgtgtagtccgactccagcccatgtgggaatgacagagaggtagggactgcattagggat-ataaactcctgctctat------cccgctcggtgtgctcttgcattcgtgactaatgcaaacagcactcttttgcagaagtaagttgtcttgctgagaaaact-ttttttcctgagtgctggttcttccttgcagcactgatcatttGtttct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81542397 1609 +  99152023 catggacacacaggactggttttaaggagcagaaagtttaataggcaagaaagaagaaaggctccccgctgtacagaaaaag-ggcgctccgaacagagaaaaagccccatgtgtggcagaatagtactcggttatattgggaggctggaggaggtggtgtctgatttgcacagggcccagggcattggtttgaccaggcatgtcattcatgtagaccgagaaaaacgtggccctcccacccttgccttttaatatgcaaatgtaggtcaccatgttgtcctgcacacgtggggtcatctggaggtgtcaccttgaggtggtgact---agaagagggtgggaatctccatgttgaatggacacagtttctaagcgctggcatttgcatatcaaagcttgGCAgcctgtagtcccagctactcaggaggctgaggcaggagattcacttgaacctgggaggcagaggctgcagtgagctgagatcgcaccactgcactctagcctgggtgacagagcgagactctgtctccaaaaaaaaagataaaaagaaaagaaaaagaaatgtttctggagttgtttctattaaaagcgaaagccttactgaggactccttaccctctctatctgcctaatataatttcggaataactcctCTACTA-AAAGTACCACTTAGGTGCTTACTATGACAGTTCTGATATTTCCCAATGCTCCTCCACAAATTCAATTTGGAAAGGTAATCTGTCCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTTCTTTCCTTTGTACAAGTT------GACTACTTTTTAATCATGGTAAAAATGAG-AAAAATGCAAGATGAAGTTAACCGCATTGC-----------------------------------CGAAATAAACTGTTATTCAGCCACAAATGACACCATCACTTTTTTATTCATAGGGCACAGTATCATTGCCAAAGAGCTTTCCTCTACATGCTCTCTTGCAGGGCAAAAAATATTGTCTATTTTATACAGAAACACAGTAAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTACTCACTTCCTCTTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTGGTATCTTCCTGTTGGGGTAGGCACTTTTTGGCAATAATGAATAGACATTTAATTAGCCAATC-AAAAAAA---CTtattaggtacagtaagttcctcttcaaaggtttaac---ttcaacttccttgttctttgttcctaagaacaatttccctgtaccttctcacccctatttacctgcttagttatctgctcagttacctgccttgtaaacgactcttcccgtcagtcccaacctgtaactcacattccctctcccttccttattagggaaaatattcacgatagcaaatcaggtctgcttagattgtgtagtctgactccagcccatgtgggaatgacacagaggtagggactgcgttagggat-ataaacccctgctctac------gccacttggtgtgctcttgcattcgtgactaatgcaaacagcactcttttgcag----aagttgtcttgctgagaaaact-tttttccctgagtgctggttcttccttgcagcactgatcatttgtttct
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7               65375493 1650 + 171882078 catggatgcagaggagtggttttaaggagcagaaagtttaataggcaagaaagaagaaaggctcccccctgtacagagaaagcagggctccgaacagagaaaaagccccatgtgcagcagaaaagtacttggttatattgggaggctggaggaggtggtgtctgatttgcattgggcccagggaatcggtttgaccaggcatgtcattcatgtagcccaagaaaaacgtggccctcccactctagccttttaatttgcaaatgtaggtcaccatattgtcctgcacaca--gggtcttctggaggtgtcaccttgaggcggtgactagaagaagagggcgggaattttcatgttgaatggactcagtttccaagtgctgacatttgcatattaaagctcgGCAgcctgcagtcccagctactcaggaggctgaggcaggagatgcaactataactgggaggaggaggttgcagtgagccgagatcacatcactgcactaaagcctggtctacagagtgagactccgtctccaaaaaaaaag---------aaaagaaaagaaatgtttcaggagttgtttctattaaaagggaaagccttactgaggactcctttccctctctatctgcctaatataatttctgagtaactcctCTACTA-AAAGTACCACTTAGGTGCTTCATATGACAGTTCTGATATTTCCCAATGCTCCTCCACAAATTAAATTTGGAAAGGTAATCCGTCCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTCA-TTCCTTTCTACAGGTTTGACTGGACTACTTTTTAATCACAGTAAAAATGAC-AAAAATGCAAGATGAAGTTAACAGCATAGATTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAAAGTGTTATTCAGCCACAAATGACATCATCACTTTTTTATTCATAGGGCACAGTATCGTTGCCAAAGAGCTTTCCTCTATATGTTCTCTTGCAGGGCAAAAAATA---TCTATTTTATACAGAAACACAGTAAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTATTCACTTCCTCCTAGATTCAGAGAGGGCTCCAACATTTTCTAAATTTTAGTATCTTGTCATTGGGGTAGGCACTTTTTGGCAAAAATGAATAGACATTTAATTAGTCAACC-AAAAAAAAACCTtattaggtacagtaagt---tcttcaaaagtttaacttgttcaacttccttgttctttgttcctaagaacaatttccctgtaccttctcggccctacttacctgattagttatctgctcagttacctgcctggtaaacaactcttcccatcagtatcaacctgtaactcacattccctctcccttccttattagggaaaatactcgcgatagcaaatcaggtccgattagatcgtgaggtccgaccccagcccatgggggaatgacacagaagtagggactgcgttagggataaaaaacccctgctctagagagaacccactcggtgtgctcttgcaattgtgaccaacccaagcagcactcttttgcag----aagttgtcttgctgagaaaaccgtttttgcctgagtgctggttcttccttgtggcactgatcatttgtttct
i macFas5.chr7              C 0 I 19321
s papAnu2.chr7               59688271 1651 + 162156779 CATGGATGCAgaggagtggttttaaggagcagaaagtttaataggcaggaaagaagaaaggctcCCCCCTGTACAGAGAAAGCGGGGCTCCGAACAGAGAAAAA-CCCCGTGTGCAGCAGAAAAGTACTTGGTTAtattgggaggctggaggaggtggtgtctgatttgcatTGGGCCCAGGGAATCGGTTTGACCAGGCAGGTCATTCATGAAGCCCAAGAAAAACGTGGCCCTCCCACTCTAGCCTTTTAATTTGCAAATGTAGGTCACCATATTGTCCTGCACACA--GGGTCTTCTGGAGGTGTCACCTTGAGGCGGTGACTAGAAGAAGAGGGCAGGAATTTTCATGTTGAATGGACTCAGTTTCCAAGTGCtgacatttgcatattaaagctcggcagcctgcagtcccagctactcaggaggctgaggcaggagatgcaACTgtacctgggaggaggaggttgcagtgagccgagatcacatcactgcactaaagcctggtcgacagagtgagactccgtctcc-aaaaaaaag---------aaaagaaaagaaatgtttcgGGAGTTGTTTCTATTAAAAGGGAAAGCCTTACTGAGGACTCCTTtccctctctatctgcctaataTAATTTCTGAATAACTCCTCTATAATAAAGTACCACTTAGGTGCTTCATATGACAGTTCTGATATTTCCCAATGCTCCTCCACAAATTAAATTTGGAAAGGTAATCCGTCCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAggtttgttcatttcctttctaCAGATTTGACTGGACTACTTTTTAATCAcagtaaaaatgacaaaaaatgcaAGATGAAGTTAACAGCATAGATTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAAAGTGTTATTCAGCCACAAATGACATCATCACTTTTTTATTCATAGGGCACAGTATCGTTGCCAAAGAGCTTTCCTCTATATGTTCTCTTGCAGGgcaaaaaata---tctattttatacaGAAACACAGTaaaaaaaGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTATTCACTTCCTCCTAGATTCAGAGAGAGCtccaacattttctaaaatttagtaTCTTGTCATTGGGGTAGGCACTTTTTGGCAAAAATGAATAGACATTTAATTagtcaacc-aaaaaaaaaccttattagGTACAGTAAGT---TCTTCAAAAGTTTAACTTGTTCAacttccttgttctttgttcctaAGAACAATTTCCCTGTACCTTCTCGGCCCTACTTACCTGATTAGTTATCTGCTCAGTTACCTGCCTTGTAAACAACTCTTCCTGTCAGTCTCAACCTGTAACTCAcattccctctcccttccttatTAGGGAAAATACTCGCGATAGCAAATCAGGTCCGATTAGATCGTGAGGTCCGACCCCAGCCCATGGGGGAATGACACAGAAGTAGGGACTGCGTTAGGGATAAAAAACCCCTGCTCTAGAGAGAACCCACTCGGTGTGCTCTTGCAATTGTGACTAACCCAAGCAGCACTCTTTTGCAG----AAGTTGTCTCGCTGAGAAAATAGTTTTTGCCTGAGTGCTGGTTCTTTCTTGTGGCACTGATCATTTGTTTCT
i papAnu2.chr7              C 0 I 6228
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023    0 + 121039945 C

a score=227610.000000
s hg38.chr15_KI270850v1_alt    276569 885 +    430880 tttttctttc---tttttttttttttttttgagacagagtttcgctctgttgcccagggtggagcacagtggcttgatctcagctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacccaccactgcgcccagctaatttttttgtatttt--tttttttttagtagagacggcatttcaccatgttagccaggatggtctcgatctcctgacttcatgatccgcccacctcggcctcccaaagtgctgggattacaggggcgagccactgcgcccagcctgatcatttgtttctaacaATCTGGGGGCTCGTCCGGAATTCCcattctcctctgagaaaagggtctccagtcaccaatagtgaggagaagcatcccactgcctcattgaggtggcctcatggtgagggatcaggacccacccagtgtgatgaataaacccggactctcagcagtctggaaaggaacagaccaacaacttaagagaaaaggatcctcacataccatggtgaccaggtaactatgtgcacagaccaacgtaagaaacatcacaagagcgacaaagtattttcttggtggttgggatatcttggagattgaaagtgtgtgttgagactcacaattgagtgcaaagcaagtgttcagtccagatctgcagttctgtggtcaccttatacagcttaaggtagcccttctgtaaaggagtctgggtcaggggtttctactgaaacagccattgctaagaggaaaccaacgttcccgtgagggaagcagccagagaaggatgaagcgaaaggagaaaagtgcaagaaacctccagcaggggggttgagcctc--ggaaaggaaagg
s panTro4.chr15              80067162 886 +  99548318 tttttctttc-----tttttttttttttttgagacagagtttcgctctgtcacccagggtggagcacagtggcttgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacccaccactgcgcccagctaatttttttgtttttttgtttttttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacttcatgatccgcccgcctcggcctcccaaagtgctgggattacaggggcgagccacttcgcccagccTGATCATTTGTTTCTaacaatctgggggctcgtccggaattcccattctcctctgagaaaagggtctccagtcaccaatagtgaggagaagcatcccactgcctcattgaggtggcctcatggtgagggatcaggacccacccagtgtgatgaataaacccggactctcagcagtctggaaaggaacagaccaacaagttaagagaaaaggatcctcacataccatggtgaccaggtaactatgtgcacagaccaacgtaacaaacatcacaagagcgacgaagtattttcttggtggttgggatatcttggagattgaaagtgtgtgttgagacacacaattgagtgcaaagcaagtgttcagtccagatctgcagttctgtggtcaccttataaagcttaaggcagcccttctgtaaaggagtctgggtc-ggggtttctactgaaacagccattgctaagaggaaaccaacgttcccgtgagggaagcagccagagaaggacgaagcaaaaggagaaaagtgcaagaaacctccagcaggggggttgagcctctaggaaaggaaagg
i panTro4.chr15             C 0 I 12869
s ponAbe2.chr15              81544006 888 +  99152023 ttttttcttttcttttttttttttttttttgagacagagttttgctctgtcgcccaggctggagctcagtggcttgatctaggctcattgcaagctccgcctcccaggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccactgcatccagctaatttttttgtatt----tttttttttagtagagacggggtttcacaatgttagccaggatggtctcaatctcctgacctcatgatccgcctacctcggcctcccaaagtgctgggattacaagggcgagccaccgcgcccagcctgatcatttgtttctaacaATCTGGGGGCTCGTCTGGAATTCCcactctcctctgggaaaagggtctccggtcaccaatagtgaggagaggcatcccactgcctcgttgaagtggcctcatggtgagggatcaggacccacccagtgtgacgaataaacccggactctcagcaatgtggaaaggaacagaccaacaacttaagagaaaaatatcctcacataccatggtgaccaggtaactatctgcacagaccaaagtaagaaacatcacaacagcaacaaagcatttccttggtggttgggatatcctggagattgaaagtgtgtgttgagactcacaattgagcgcaaaccaagtgttcagtccagatctgcggttctgtggtcaccttatactggttaaggcgacccttctgtaaaggagtctgggtcaggggtttctactgaaacagccattgctaacaggaaaccaacgttcccgtgaaggaagcagccagagaaggacgaagtgaaaggagaaaagtgcaagaaacctccagcaggggggctgagcctctaggaaaggaaagg
i ponAbe2.chr15             C 0 I 6646
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e papAnu2.chr7               59689922 6228 + 162156779 I
e macFas5.chr7               65377143 19321 + 171882078 I
e nomLeu3.chr6              102204023   0 + 121039945 C

a score=0.000000
s hg38.chr15_KI270850v1_alt    277454 7795 +    430880 [encoded data, 7795 characters]
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e papAnu2.chr7               59689922 6228 + 162156779 I
e macFas5.chr7               65377143 19321 + 171882078 I
e nomLeu3.chr6              102204023    0 + 121039945 C
e ponAbe2.chr15              81544894 6646 +  99152023 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=38604.000000
s hg38.chr15_KI270850v1_alt    285249 431 +    430880 cctgggagaCATTTTTCATTCTAAAAcagtgattccctaccaagagttcatagatgccaagaagtccataaaaggcgtaatggaattgccaaattatgttaaatacttcaaaaggactcaaagccatatactagttcccaataggcctgcacaagttattagaacaagctgctttgcattCTTGTGTGATCAGAACCAGTAACTAGATGGCAATCAGGTCTGTTACTGAAGATGGAAAAACTATACTTAAGTTTGTATAACAATCTTTCATAACATGGCTTCACAGAAAAGAAGTATAAAAAGGATTCCTTG--GTTGAAAAAGAGTGCTCTTTTCCCTTCATTATTTAAGATTAGGACAAATTTATAAAACAGGAAAAAAA--TAGCACAAATCCCTTGGCAAACAGAGTAAAACATCTACTCTGTTTTGCTTT
s ponAbe2.chr15              81551540 435 +  99152023 cCTGGGAGACATTTTTCATTCTGAAAcagtgattccctaccaagagttcacagatgccaagaagtccataaaaggagtaatggaattgccaaattatgttaaatacttcaaaaggactcaaagccatatactagttcccaataggcctgcacaagttattagaacaagctgctttgcattttggTGTGATCAGAACCAGTAACTAGACGGCAATCAGGTCTGTTACTGAAGATGGAAAAACTATACTTAAGTTTGTATAACAATCTTTCATAACATGGCTTCACAGAAAAGAAATATAAAAAGGATTCCTTGAGGTTGAAAAAGAGTGCTCTTTTCCCTTCATTATTTAAGATTAGGACAAATTTATAAAACAGGAAAAAAAAATAGCACAAATCCCTTGGCAAACAGAGTAAAACATCTACTCTGTTTTGCTTT
i ponAbe2.chr15             I 6646 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e papAnu2.chr7               59689922 6228 + 162156779 I
e macFas5.chr7               65377143 19321 + 171882078 I
e nomLeu3.chr6              102204023   0 + 121039945 C
e panTro4.chr15              80068048 12869 +  99548318 I

a score=626389.000000
s hg38.chr15_KI270850v1_alt    285680 540 +    430880 TTTTCACTTCTTACACTCTCTTTCATAGGAAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACCTTTTTGTACTATCCATGACAAGCTCTTGATGTTATCTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTCAAGCACAATATAGCTAGAATAGGCTCATACATTCAATAAAACAAATATTTACCAAGCATTTATTGAGTGGAAGATAAAAAGCACAAAGCATAATTATAAAATATTTTCCCCTGCCACCAT---AAAAAAA-----TTAAACAGGCTTACAGAATACAGTGTAAGAAAACATGACCAAAGCAAAAATAGTAAGGACTAAAGAAGGGAGGAAGGGGAAATATCAACATGGACTGAATATGACCCAAAAGAGCCTTGATGGATGGTCAGACATGTAAAGGCAAATTGGTTAGGGTTAAGGGGTGGAGGTCA-GGGCACGTTCTATAGGGAAACGGCAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCACCTGGACAGGACTCTT
s ponAbe2.chr15              81551975 509 +  99152023 CTTTCACTTCTTACACTCTCTTTCATAGGAAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACCTTTTTGTACTATCCATGACAA-------------------------------ATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTCAAGCACAGTATAGCTTGAATAGTGTCATTTACTCAACAAAACAAATATTTACCAAGCATTAATTGAGTGGAAGATAAAAAGCACAAAGAATAATTATAAAATATTTTTCCCTGCCACCAT---AAAAAAA-----TTAAACAGGCTTACAGAATACAGTGTAAGAAAACATGACCAAAGCAAAAATAGTAAGGACTAAAGAGGGGAGGAAGGAGAAATAGCAACATGGACTGAATATGACCCAGAAGAGCCTTGATGGATGGTCAGACATGTAAAGGCAAATTGGGTAGGGTTAAGGGGTGGAGGTCA-GGGCACATTCTATAGGGAAACAGCAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCACCTGGACAGGACTCTT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              102204023 534 + 121039945 TTTTCACTTCTTACACTCTCTTTCATAGGGAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACCTTTTTGTACTATCCATGACAAGTTCTTGAAGTTATGTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTACAAAGCAGTTAAGATTTTTGTTCAAGCACAATATAGCTAGAATAGGGTCATACATTCAATAAAACAAACATTTACCAAGCATTTATTGAGTGGAAGATAAAAAGCACAAAGCATACTTATAAAACATTCTCCCCTGCCACCAT---AAAAAAGTTTTTTTAAGC---CTTACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTGAGGACTAAAGAGGGGAGGAAGGGGAAACATCAGCACAAACTAAATATGACCCAGAAGAGCCTT----GATGGTCAGGCGCGTAAAGACAAATTGGGTAGGGTTAGGGGGTGGCTGTCAGGGGCACATTCTACAGGGGAAAAACAGCTGATATAGAAGCCTGAAAGGAAAAGCGGGCAGAGCACCTGGACAGGACTCTT
i nomLeu3.chr6              C 0 N 0
s macFas5.chr7              106641418 535 - 171882078 TTTTCACTTCTTACACTCTCTTTCATATGAAGTCAATTTACAGACTTCTATCAAGCCCTTAGAGACCTTTTTGTACTATCCATGACGAGTTCTTGATGTTATCTCTGCACTTTTGACACATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTCAAGCACAATGTAGTGACAATAGAATCACACACTTAATAAAACAAATATTTACCAAGCATTTATTCAGTGGAAGATGAAAAGCACAAAGTATAATTATAAAATATTCTCCCCTGCCACCATTTTAAAAAAA-----GTAAAAAGGCTTACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTAAGGACTAAAGAGGGTAGGAAGGTGATATATCAGCATGAACAAAATATGACCCAGAAGAGCCTT----GGTGGTCAGACATGTAAAGACAAATTGGGTAGGGTTAGTGGGTGGCTGTCAGGGGCACATTCTACAGGGGAAAAATAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCGCCTGTACAGGACTGTT
i macFas5.chr7              I 2310 n 19321
s papAnu2.chr7              102534814 535 - 162156779 TTTTCACTTCTTACACTCTCTTTCATATGAAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACCTTTTTGTACTATCCATGACGAGTTCTTGATGTTATCTCTGCACTTTTGACACATTCTTAGCAGTTAACTTATAAGGCAGTTAAGATTTTTGTTCAAGCACAATATAGTGACAATAGGATCACACacttaataaaacaaatatttaccaagcatttATTCAGTGGAAGATGAAAAGCACaaagtataattataaaatattctcccctgccaccattttaaaaaaa-----gtaaaaaggcttACAGAATACAGCAT-----AACatgaccaaagcaaaaatagtaaGGACTAAAGAGGGGAGGAAGGTGACATATCAGCATGAACAAAATATGACCCAGAAGAGCCTT----GGTGGTCAGACATGTAAAGACAAATTGGGTAGGGTTAGTGGGTGGCTGTCAGGGGCACATTCTACAGGGGAAAAATAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCGCCTGTACAGGACTGTT
i papAnu2.chr7              C 0 n 6228
s chlSab2.chr29              20390302 535 -  24206276 TTTTCACTTCTTACACTCTCTTTCATATGAAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACCTTTTTGTACTATCCATGACGAGTTCTTGATGTTATCTCTGCACTTTTGACACATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTCAAGCACAATATAGTGACAATAGGATCACACACTTAATAAAACAAATATTTACCAAGCATTTATTCAGTGGAAGATGAAAAGCACAAAGTATAATTATAAAATATTCTCCCCTGCCACCATTTAAAAAAAA-----GTAAAAAGGCTTACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTAAGGACTAAAGAGGGGAGGAAGGTGACATATCAGCATGAACAAAATATGACCCAGAAGAGCCTT----GGTGGTCAGACATGTAAAGACAAATTGGGTAGGGTTAGGGGGCGGCTGTCAGGGGCACATTCTACAGGGGAAAAACAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGATCACCTGTACAGGACTCTT
i chlSab2.chr29             n 1402 n 1402
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=175123.000000
s hg38.chr15_KI270850v1_alt    286220 697 +    430880 CAGGAACGAGCACGCACGTGCGTGAAAAACAACTTAGTGAGGTACCGTTCACCCAAACATTAGAGAAACCGCGTAAAAATGCTTCTTGGTAAGCATGAAGAAGGCAGGGCTCGCCCTGTAGAAGAACTCAATAAACATTTGAACTGTCTAAAGAGTAAAAGTTAATGAATAGGCCAAACTCACTCCTTTCTTTGTTTTAAGAGCTACAACTTTAGAGAATAACAAATCACAAACCCAGTAGACAGGTCCTGGCATTTCAAATCCAACCCCATTTTTCCCTTAATCTTTCCCCTCTGAGCAAATGGTATCGACATGAACAAGCCATGTTGATTTGATCAAGACACTCAACCATGGttaaaagagtctttaccttcaagagatacaaacagaaatattgacagatgaagtgatctgtctggaatctgcttcaaaataatccaaagtggagtataaatgaaataagattagccaaaagtttatcattgttgagggtggCTACAGTACATAGTTCAACTTTTGTTGAggccaggcatggtggctcacacctgtaatcccaacactttgtgaagtggaggcagaaggatcacttagcccaggagttcgagaccagcccgggaaacacagggagacaccgtctctccaaaaaaaaaaaaaaaaaaaaaaaaaattagccaccatg-atggtgagtgctacttgt
s ponAbe2.chr15              81552484 686 +  99152023 CAGGAACTAGCACGCACGTGTGTGAAAAACAACTTAGTAAGGTACCGTTCACCCAAACATTAGAGAAACTGCATAAAAATGCTTCTTGGTAAGCATGAAGAAGGCAGGGCCCAGCTTGTAGAAGAACTCAATAAATATCTGAACTGTCTAAAGAGGAAAAGTTAATGAATAGGCCAAACTCACTCCTTCC-----TTTAAGAGCTACAACTTTAGAGAATAACAAATCACAAACCCAGTAGACAGGTCCTGGCATTTGAAATCCAACCCCATTTTTCCCTTAATCTTTCCCTTCTGAGCAAATGGTATCAACATGAACAAGCCATGTTGATTTGATCAAGACACTCATCCATGGTtaaaagagtctttaccttcaagagatacaaac--aaatatttacagatgaagtgatctgtctggaatctgcttcaaaataatccaaagtggagtataaatgaaataagattagccaaaagtttatcattgttgaggctggCTACAGTACATAGTTCAACTTTTGTTGAggccaggcatggtggctcacacctgtaatcccaacactttgtgaagtggaggcagaaggatcatttagcccaggagttcaagaccagcctgggaaacatagggagacattgtctctcc-----aaaaaacaacaacaaaaaaaattagccaccatgaatggtgagtgctacttgt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19246909 689 - 121039945 CAGGAACTAGCACGCACATGTGTGAAAAACAACTTAGTGAGGTACCATTCACCCAAACATTAGAGAAACCGCATAAAAATGCTTCTTGGTAAGCATGAAGAAGGCAGGGCCTGGCTTGTAGAAGAACTCAATAAACATTTGAACTGTCTGAAGAGGAAAAGTTAATGAATAGACCAAACTCACTCCTTTC-----TTTAAGAGTTACAACTTTAGAGAATAACAAATCACAAACCCAGTAGACAGGTCCTGGCATTTGAAATCCAACCCTTTTTTTCCCTTGATCTTTCCCCTCTGAGCAAATGGTATCGACATGAACAAGCCATGTTGATTTGATCAAAACACTCATCCATGGttaaaatagtctttaccttcaagagatacaaacagaaatatttacagatgaagtgatctgtctgcaatctgcgtcaaaagaatccaaagtggagtataaatgaaataagattagccaaaagtttatcattgttgaggctggCTACAGTACCTAGTTCAACTTTTGTTGAggcc-ggcatggtggctcacacctgtaatcccaacactttgtgaagtggaggcagaaggatcacttagcccaggagttcgagaccagcctgggaaacatagggagacatcatctctcc--aaaaaaaaaaaaaaaaaaaaaaaattagccaccatg-aaggtgagtgctacttgt
i nomLeu3.chr6              N 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e chlSab2.chr29              20390837 1402 -  24206276 I
e papAnu2.chr7              102535349 6228 - 162156779 I
e macFas5.chr7              106641953 19321 - 171882078 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=1394799.000000
s hg38.chr15_KI270850v1_alt    286917 1136 +    430880 gaggctgaggtagaaggatcacttgagcctgggaggtcaaggctgcactaagctgtgattgtgccactgcacttcagcctggacaaaagagtgagactctgtctcaaaacaaaaaacaaaaaaaaaaaaaaaaaGAAAGATGGAACATATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTGCAATCTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATGTAGTCTTTTTTTCTTTTTTAATGACAAATCTACTTTATAAAGTACCTTCCCTTATCAGTGAGAAA------GAAAATATAAAAGAGCTGAGTCAAATCTGGAGTCAATAAAGGTTTGTAGTTCTTCAAACAAGAACCCTTGCTCTGAATTC------TAAAAGTAAATAACAGACATGCT-GAAAAAATATTTCATTTTATGAAAGGTTCTGCACCAAAGCCTTTTACAAAAACAGTCTACAAAACCTACTAAACATCCTGTTCCATCTTCCACTTTGAAATCACTTGCTTGGTCTAAATT--CAGTTTCATTAATAAAAATGAACACAATAAAACAGTACTCTATGCCCCCATTCCACCCCAACAATTATCTTCAAAGGATGTCCAGATTTCTGTACGCTATTTGCCAATCCTACCTACATATTAAAAAAACAAATCTCAGCTTTAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGGGTTGTATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAGCAACACCTTTCATTATTAGAAATGTATTTCCATTTCAAGCTACGTTTCAAAGCAAATTATATTCTTCAACTAGCCACTTTCATAGGTATTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGGCCTCCAGTGTTAATTAGCACAAAAAGATGGGTTTATTTTCAAAAGACAGGACATTCTTTTCAGCCTTCAAAATGTTTTCATCAAAAATTA--CTATGTACCATAAAAATAACACGCTCACTGTAAACATTTAAGCGATTCAAAG----ATAAAGTAGAAAGTCAAAGTCTCCACCTACCTGCCCTCTAAGATGTTAATACTTATGCTTAACATATTTTATTTTTTAAAAGGAGGGGAAATCACATCATAACTACTTT
s ponAbe2.chr15              81553170 1140 +  99152023 gaggctgagatagaaggatcacttgagcctgggaggtcaaggctgcactaagctgtgattgtgccaccgcacttcagcctggacaaaagagtgagactctgtctcaaaac-----------aaaaaaaaaaaaagaaaGATGTAACATATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTGCAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATGTAGTCTTTTTTTCTTTTTTAATGACAAATCTACTTTATAAAGTACCTTCCCTTATCAGTGAGAAAGAAAAGGAAAATATAAAAGAGTTGAGTCAAATCTGGAGTCAATAAAGGTTTGTAGTTCTTCGAACAAAAACCCTTTCTGTGAATTCTAAAAGTAAAAGTAAATAACAGATATGCT-GAAAAAAGATTTCATTTTATGAAAGATTCTGCACCAAATCCTTTTACAAAAATAGTATACAAAACCCACTAAACATCCTGTTCCATCTTCCACTCTGAAATCAC-TGCTTGGCCTAAATTCACAGTTTCTTCAATAAAAATGAACACAGTAAAACAGTACTCTATGCCCCCATCCCACCCCAACAATTATCTTCAAAGGATGTCCAGATTTCTGTACACTATTTGCCAATCCTACCTACATCTTAAAAAAACAAATCTCAGCTTTAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGGGTTGTATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAGCAACACCTTTCATGATTAGAAATATATTTCCATTTCAAGCTACGTTTCAAGGCAAATTATATTCTTCAACTAGCTACTTTCATAGGTGTTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGGCCTCCAGTGTTAATTAGCAC--AAAGATGGGTTTATTTTCAAAAGACAGGACATTCTTTTCACCCTTCAAAATGTTTTCATCAAAAATTA--CTATATATCATACAAATAACATCCTCACTGTAAACATTTAAGCGATTCAAAGATATATAAAGTAGAAAGTCAAAGTCTCCACCTACATGCCCTCTAAGATGTTAATACTTAGGCTTAACATATTTTATTTTTTAAAAGGAGGGGAAATCACATCACAACTACTTT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19247598 1123 - 121039945 gaggctgaggtagaaggatcacttgagcctgggaggtcaaggctgcactaagctgtgattgtgccactgcacttcagcctggacaaaagagtgagactctgcctcaaaac--------------aacaaaaaaagaaaGATGTAACATATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTGCAATTTTTTTCCTTAAACCCAAAAGAACTTCTGACCAGGTAAATGTAGTCTTTTTTTCTTTTTTAACGAAAAATCTACTTTATAAAGTACCTTCCCTTATCACTGAGAAAGAAAAGGAAAATATAAAAGAGTTGAGTCAAATCTGGAGTCAATAAAGGTTTGTAGTTCTTCAAACAAGAACCCTTGCTGTGAATTC------TAAAAGTAAGTAACAGATATGCT-GAAAAAAGATTTCATTTTATGAAAGATTCTGCACCAAAGCCTTTTACAAAAATAGTATACAAAACCCATTAAACACCCTGTTCCATCTTCCATTCTGAAATCAC-TGCTTGGTCTAAATTCACAGTTTCTTTAATAAAAATGAACAGAATAAAACAGTACTCTATGCCCCCATCCCACCCCAACAATTACTTTCAAAGGATGTCCAGATTTTTGTACACTATTTGCCAATCCTACCTACGTCTTAAAAAAACAAATCTCAGCTTTAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGGGTTGTATTTGCTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAGCAACACCTTTCATTATTAGAAATATATTTCCATTTCAAGCTACGTTTCAAAGCAAATTATATTCTTCAACTAGCTACTTTCATAGTTGTTTGGAATGCAATATTTTATTATAAAGCCTTGGCTGGCCTCCAGTGTTAATTAGCAC--AAAGATGGGTTTATTTTCAAAAGACAGGACATTCTTTTCGGCCTTCAGAATGTTTTCATCAAAAATTA--CTATGTATTATACAAATCACATGCTCACTGTAAACATTTAAGAGATTCAAAGATAGATAAAGTAGAAAGTCAAAGTCTCCATCTACCTGCCCTCTAAGATGTTAATACTTAGGCTTAACATATTTTATTTTTTAAAAGGAGGGGAAATCACATCA--------TT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65396464 1130 + 171882078 gaggctgaagtagaaggatcacttgagcctgggaggtcaaggctacactaagctgtgactgtgccactgcacttcagtctggacaaaagagtggcactctgtctcaaaac----aaaaacaaacaaacaaacaaaaaaGATGTAACACATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTGCAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATATAGTCTTTTT-----TTTTAATGAAGAATCTACTTTATAAAGTACCTTCCCTTACCAGTGAGAAAGAAAAGGAAAATACAAAAGAGCTGAGTCAAATCTGGAGTCAATAAAGGTTTGCAGCTCTTCAGACAAGAACCCTTTCCACGAATTC------TAAAAGTAAATAACAGGCATGTT-GAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAACATCCTGTTCCATCTTCCACTCTGAAATCAC-TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAGTAAAACAGTACTCTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCTGTACACTATTTGTGAATCCTACCTAGGTCTTAAAAAAAC--ATCTCAGCTTTAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGGGTTGTATTTGTTTTCTATGAAGGGATAATAACGGGATATTTTATTTTCATTTATTACTAAAACAACATCTTTCATTATTAGAAATATACTTCCATTTCAAGATATATTTCAAAGCAAATTATATTCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGGCCTCCAGAGTTAATTAGCAC--CAAAATGGGTTTATTTTCAAAAGACAGGACATTCTTTTCAGCCTTCAAAATGTTTTCATCAAAAATTACTCTATGTATCATACAAATAATATGCTCACTGTAAACATTTAAACGATTCAAAG----ATAAAGTAGAAAGTC--AGTCTCCACCTACCTGCCCTCTAAGATGTCACTACTTATGCTTAACATATTTTATTTTTAAAAAGGAGGGGAAACCACATCATAACTACTTT
i macFas5.chr7              I 19321 I 266
s papAnu2.chr7               59696150 1134 + 162156779 gaggctgaagtagaaggatcacttgagcctgggaggtcaaggctacactaagctgtgactgtgccaatgcacttcagtctggacaaaagagtgacactctgtctcaaaac----aaaaacaaacaaacaaacaaaaaagatgtaaCACATTATAACTGTCAGACCATTTGTTGCAACCTGggctacaatttttttctttaaacccaAAAGAACTTCTGACCAGGTAAatatagtctttttttctcttttaatgaaGAATCTACTTTATAAAGTACCTTCCCTTAtcagtgagaaagaaaaggaaaatacaaaagagcTGAGTCAAATTTGGAGTCAATAAAGGTTTGTAGCTCTTCAGACAAGAACCCTTTCCATGAATTC------TAAAAGTAAATAACAGGCatgttaaaaaaaagatttcattttatgaaagatTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAACATCCTGTTCCATCTTCCACTCTGAAATCAC-TACTTGGTCTAAATTCACAgtttcattaataaaaatgaacacaataaAACAGTACTTTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCTGTACACTATTTGCTAATCCTACCTAGGTCTTaaaaaaaC--ATCTCAGCTTTAGAGGAAAATCACTGGTTAATTAAAACGTCATTTAGggttgtatttgttttctatgaagGGATAATAatgggatattttattttcatttattactaAAACAACACCTTTCATTGTTAGAAACATACTCCCATTTCAAGATATGTTTCAAAGCAAATTATATTCTTCAACTAGACACTTTCATAGGTGTTTTGaatgcaatattttattataaagccTTGGCTGACCTCCAGTGTTAATTAGCAC--AAAGATAGGTTTATTCTCAAAAGACAGGACATTCTTTTCGGCcttcaaaatgttttcatcaaAAATTA--CTATGTATCATGCAAATAATATGCTCACTGTAAACATTTAAACGAttcaaaa----ataaagtagaaagtc--AGTCTCCACCTACCTGCCCTCTAAGATGTCACTACTTAtgcttaacatattttatttttaaaaaggaggggaAACCACATCATAACTACTTT
i papAnu2.chr7              I 6228 C 0
s chlSab2.chr29               3875106 1124 +  24206276 gaggctgaagtagaaggatcacttgagcctgggaggtcaaggctacactaagttgtgattgtgccactgcacttcagtctggacaaaagagtgacactctgtctcaaaac----aa----aaacaaacaaacaaaaaaGATGTAACACATTATAACTGTCAGACCATTTGTAGCAACCTAGGCTACAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATATAGTCTTTTTTTCTTTTTTAATGAAGAATCTACTTTATAAAGTACCTTCCCTTATCAGTGAGAAAGAAAAGGAAAACACAAAAGAGCTGAGTCTAATTTGGAGTCAATAAAGGTTTGTAGCTCTTCAGACAAGAACCCTTTCCACGAATTC------TAAAAGTAAATAACAGGCATGTT-GAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAACATCCTGTTCCATCTTCCACTCTGAAATCAT-TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAATAAAACAGTACTCTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCGGTACACTATTTGCCAATCCTACCTAGGTCTTAAAAAAAC--ATCTCAGCTTTAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGGGTTGTATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAACAACACCTTTCATTGTTAGAAATATACTTCCATTTCAAGACAGATTTCAAAGCAAATTATATCCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATATTATTATAAAGCCTTGGCTGACCTCCAGTGTTAATTAGCAC--CAAGATAGGTTTATTCTCAAAAGACACGACATTCTTTTCGGCCTTCAAAATGTTTTCATCAAAAATTA--CTATGTATTATACAAATAATATGCTCACTGTAAACATTTAAACGATTCAAAG----ATAAAGTAGAAAGTC--AGTCTCCACCTACCTGCCCTCTAAGATGTTACTACTTATGCTTAACA-----TATTTTTTAAAAGGAGGGGAAATCACATCATAACTACTTT
i chlSab2.chr29             I 1402 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=677948.000000
s hg38.chr15_KI270850v1_alt    288053 563 +    430880 AAAAGGCCTTTACAACTTCTTTGTAATTacacacacacacac--acacacacacacacacacacacaca-----gagtggggaaggagagggagggggtggggga------------aggagggagggaCAGACAGACACATACACT------------------------------TCAATGTAAGGCTTATTATAAAACGTACAAAAAAGGCGAGAAAACAGAGATGGGTGGGAGACGGGCCTGCAATTTCAATATCTGAAGTCAAAACAACTTATTAGGAGATAATTTAGAATG-CTTCCTGTCAACCCTATTTGGGGAAAATATTGATTTGATAAAAGGTTACGGACTGAAATCAAAAAGTAGCTGCCTTTTGAAGGTCAATTAATCCTTTGGTTTTAGGATAAACTAAAATGTTACAAAACACACACAGTGAAACACACAGAGAACTCAAACTGACCTAACTACATTTATCCTCTCCTTCCCAATTATCCTTTATCACTAATTTCCCCAAACTACTACTCtattagtttcctattgctgttaacaacaaattatcacaaactcagtggcttaagacaacacaaatttattatcatgttatcatttctg
s ponAbe2.chr15              81554310 567 +  99152023 AAAAGGCCTTTACAACTTCTTTGTAATTacatacacacacac--acacacacacacacacacacacacacaAACgagtgcggaaggagagggagggggtggggga------------aggagggagggaCAGACAGACACATACACT------------------------------TCAATGTAAGACTTATTATAAAACATACAAAAAAGGTGAGAAAACAGAGATGGGTGGGAGATGGGCCTGCAATTTCAATATCCGAAGTCAAAACAACTTATTAGGAGATTATTTAGAATG-CTTCTTGTCAAGCCTATTTGGGGAAAATATGGATTTGATAAAAGGTTACAGACTAACAGCAAAAAGTAGCTGCCTTCTGAAGGTCAATCAATCCTGTGGTTTTAGGAAAAACTAAAATGTTACAAAACACACACAGTGAAACATACAGAGAACTCAAACTGATCTAACTGCATTTCTCCTCTCCTTCCCAATTATCCTTTATCACTAATTTCCCCAAACTACTACTCtatta-tttcctattgctgttaacaacaaattatcacaaactcagtggcttaaaacaatacaaatttattatcatattatcatttctg
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19248721 558 - 121039945 AAAAGGCCTTTACAACTTCTTTGTAATGacacacacacacac--acacacacacacacacaTACA---------gagtggggaaggagagggagggggtggggga------------aggagggagtgaCAGACAGACACATACACT------------------------------TCAATGTAAGACTTATTATAAAACATACAAAAACGGTGAGAAAACAGAGATGGGTGGGAGATGGGCCTGCAATTTCAATATCCGAAGTCAAAACAACTTATTAGGAGATTATTTAGAACG-CTTCTTGTCAACCCTATTTGGGGAAAATATTGATTTGATAAAAGGTTACAGACTAATATCAAAAAGTAGCTGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATGTTACAAAACACACACAGTGAAACATACAGAGAACGCAAACTGATCTAACTGCATTTATCCTCTCCTTCCCAATTATCCTTTATCACTAATTTCCCCAAACTACTACTCCatta-tttcctattgctgttaacaacaaatcatcacaaactcagtggcttaagacaacacaaatttattatcatattatcatttctg
i nomLeu3.chr6              C 0 I 3143
s macFas5.chr7               65397860 583 + 171882078 aaaaGGCCTTTACAACTTCTTTGTAATTacacacacacagag--acacacacacacaca---------------GAGTGGGGAAGGAGAGGGCGGGGTCGGGGGA------------AAGAGGGAAGGACAGACAGACACATACACTAACCACTGATAATTTACTTATTATAATAAGTCAATGTAAGACTTATTATTAAACATACCAAAAAAGTGAGAAAACAGAGATGGGTGGGAGATGGGCCTGCAATTTCAACATCCGAGGTCAAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGTCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCCGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATCTTACAAAACACTGACAGTAAAACATACAGAGAACTCAAACTGATCTAACTGCACTTATCCTCTCCTTGCCAATTATTCTTTATCACTAATTTTCCCAAACTACCATTCtattagtttcacattgctgtt-acaacaaattatcacaaactcagtggcttaagacaacacaaatttattatcatattatcatttctg
i macFas5.chr7              I 266 C 0
s papAnu2.chr7               59697284 579 + 162156779 AAAAGGCCTTTACAACTTCTTtgtaattacacacacacagag--acacacacacacaca---------------gagtggggaaggagagggCGGGGTcggggga------------aagagggaag----gacagACACATACACTAACCACTGATAATTTACTTATTATAATAAGTCAATGTAAGACTTATTATTAAACATACCAAAAAAGCGAGAAAACAGAGATGGGTGGGAGATGGGCCTGCAATTTCAATATCCGAAGTCAAAACAGCTTATTAGGAGATAATTTAGAATGTCTTCTTGTCAACcctatttggggaaaatattgctttgataaaaggttacagacTGACATCAAAAAGGAGCTGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATGTTACAAAACACTGACAGTAAAACATACAGAGAACTCAAACTGATCTAACTGCACTTATCCTCTCCTTGCCAATTATCCTTTATCACTAATTTTCCCAAACTACTATTCTATTAGTTTCATATTGCTGTt-acaacaaattatcacaaactcagtggcttaagacaacacaaatgtattatcataTTATCatttctg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               3876230 597 +  24206276 AAAAGGCCTTTACAACTTCTTTGTAATTacacacacacagagacacacacacacacaca---------------GAGTGGGGAAGGAGAAGGCGGGGTCGGGGGAAAGAGGGGGGGGAAGAGGGAAGGACAGACAGACACATACACTAACCACTGATAATTTACTTATTATAATAAGTCAATGTAAGACTTATTATTAAACATACCAAAAAAGTGAGAAAACAGAGATGGGTGGGAGATGGGCCTGCAATTTCAACATCTGAGGTCAAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGCCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCTGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATGTTACAAAACACTGACAGTAAAACATACAGAGAACTCAAACTGATCTAACTGCACTTATCCTCTCCTTCCCAATTATCCTTTATCACTAATTTTCCCAAACTACTATTCtattagtttcatattgctgtt-acaacaaattatcacaaactcagtggcttaagacaacacaaatgtattaccacattatcatttctg
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=151477.000000
s hg38.chr15_KI270850v1_alt    288616 182 +    430880 gaagtcaaaagtccaaaatgactttcacttgtttaaaaatcaaagtgccagcagggctgtgttccttctagagtctctatgtggagaaagtgttcttttgctatttccagcttctagagctgcattctgtggctcatgggctccttcctccatgttctaagccagcagtgtagcatcttcaa
s ponAbe2.chr15              81554877 182 +  99152023 gaagtcagaagtccaaaatgactttcacttgtttaaaaatcaaggtgccagcagggctgtgctccttctagagtctctacgtggacaaagtgttctgttgcgatttccagcttctagagctgcattccgaagctcatgggctccttcctccaggttctaagctagcagtgtagcatcttcaa
i ponAbe2.chr15             C 0 I 2685
s macFas5.chr7               65398443 180 + 171882078 gaagtcagaagtccgaaatgactttcatttgtttaaaattcaaggcgctggcagggctgtgttccttctagagtc--tgtgtggagaaagtgttcttttgccatttccagcttctagagctgcattccgtggctcatggcctccttcttccatgttctaagccagcagtgtagcatcctcaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59697863 180 + 162156779 gaagtcagaagtccgAAATgactttcatttgtttaaaattcaaGGCgctggcagggctgtgttccttctagaGTC--TGTGTGGAAAAAGTGTTCTTTTGccatttccagcttctagagctgCATTCCGTGGCTCATGGCCTCCTTCTTCCATGTTCTAAGCCAGCAGTGTAGCATCCTCAA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29               3876827 182 +  24206276 gaagtcagaagtccgaaatgactttcatttgtttaaaattcaaggcgctggcagggctgtgttccttctagagtctttgtgtggagaaagtgttcttttgccatttccagcttctagagctgcattccgtggctcatggcctccttcttccatgttctaagccagcagtgtagcatcctcaa
i chlSab2.chr29             C 0 I 2647
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e nomLeu3.chr6               19249279 3143 - 121039945 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=1221.000000
s hg38.chr15_KI270850v1_alt    288798 9 +    430880 tcacctgac
s macFas5.chr7               65398623 9 + 171882078 atctctgac
i macFas5.chr7              C 0 I 2606
s papAnu2.chr7               59698043 9 + 162156779 ATCTCTGAC
i papAnu2.chr7              C 0 I 2551
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556 0 -  40214260 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e nomLeu3.chr6               19249279 3143 - 121039945 I
e ponAbe2.chr15              81555059 2685 +  99152023 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=0.000000
s hg38.chr15_KI270850v1_alt    288807 2366 +    430880 aaaatccaacacgttttcatcataaaaatggtcaaagtaggaatagaagggaacgtcctcatctaacaaaaggtacctgtgaaaaacccacacctaacaacatcatacttaatggggaaagcttggatgctttctctttcagatcagtagcaagacaaggatgtttgtgctcaccacttctattcaatgttgtaccagagatgcttctcagggcgattaggcaagaaaaagaaataaaaggcatccagattggaaaggaagaaaacgatctccaactacttcatcctgtacatagaaaatcctaaggcatccacttaagagctgttgccaaacaaacaagccagattatagtctataattgacctctgaaacaaggctacagtttcagagaccggtatgcaaaaatcaatagtatttctatatataatcaatgaacaatcaaaaactgaacaattaagataacaaaattaacaatcgcatcaaaatgaataaaatcataagcaacaaatttcaagaaagtaccaagtttatacaatgaacactacaaaacactgttgaaagaaatcaaagacaacctaaatgaaaggaatcaaattcagcatccagaaaaaattcctcacatttatgatcaatttcaacaacgatgcccaagacaattcaattggggaaagaacagtcttttcaacaaatgcttctggaacatctagagatccacatgcaaaagaaaaaagttggactcttcccttacaaaacacacaaaaatgaactctcacattacatacctaaatgtaagagctaaacctataaaatttctagaagaaaacataggagtaaatctctgtgactctgggttaggcaaagaattgttcttagatatgatgccaaaaaaaaatcaacaacagaacattatcaaaactgaaaattttgcttgaaaggatagcatcaaggaagtgaaatgacaacccacagaatgagagataatttttgcaaatcatgtatctgataagggacctgtagtcagaatatgcaaagaacccttacaattcaataagacaacccaatttaaaaacaggcaaaggatgtgaataggcatttctccaaagatacggaaaaacggccaataagcacataaaaagatgctcaaaatcatttgccatttgggaaatgcaatcaaaaccacaatgaggtatcacttcacgcccattagggtggctatagatcagaaagtcagataacatgtgttggcaagcacatggaaacactgaagtccttacacactgctggtaggaatgtaaaatggtgcagccactgtggaaaacagttttccaatttctcaaaatgttaaacacagttatcatacacccaagcaattctactcttaggtatatacccaagagaaatgaaaacatatgtcttcaccagaacttgctgttcacagcagcattatgcataatagaccaaaagtggaaacaactcaactgcccatcaactggtgaatggataagtaaaatgtgatgtaaccagtcattggactgtcattcattaataaaaagaacaaggtactgattcatgttctaacatgagtgaatcttgaaaacactatgctaaattaaagaagccagtcacaaaaggccgtgtattgcatgattttatatatacatgaacttttatatatatataattatatatattatatataattttatatatataaatttctatatataaatatataaaatcatatatatgatatatattttttcatatacatcatatatatttacaaaaattatatatcatatatcatatgatatatgagatatatatcatgatatatatgatatatgatatatatcatatgagatatatgatatcatgagatatatgatatcatatgatatatatgatatagatatcatatgatatatatataatatatatatgatagatatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatat
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e papAnu2.chr7               59698052 2551 + 162156779 I
e macFas5.chr7               65398632 2606 + 171882078 I
e nomLeu3.chr6               19249279 3143 - 121039945 I
e ponAbe2.chr15              81555059 2685 +  99152023 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=1192.000000
s hg38.chr15_KI270850v1_alt    291173 28 +    430880 catattatatatgatatcatatatatac
s nomLeu3.chr6               19252422 28 - 121039945 catgtattgcatgattttatatatacat
i nomLeu3.chr6              I 3143 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e papAnu2.chr7               59698052 2551 + 162156779 I
e macFas5.chr7               65398632 2606 + 171882078 I
e ponAbe2.chr15              81555059 2685 +  99152023 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=-730.000000
s hg38.chr15_KI270850v1_alt    291201 10 +    430880 cacatacatc
s nomLeu3.chr6               19252450 10 - 121039945 gaacttttac
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59700603 10 + 162156779 cacaaaaatc
i papAnu2.chr7              I 2551 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e macFas5.chr7               65398632 2606 + 171882078 I
e ponAbe2.chr15              81555059 2685 +  99152023 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=1620.000000
s hg38.chr15_KI270850v1_alt    291211  9 +    430880 atatataca---
s ponAbe2.chr15              81557744  9 +  99152023 atatatata---
i ponAbe2.chr15             I 2685 C 0
s nomLeu3.chr6               19252460  9 - 121039945 atatatata---
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7               59700613 10 + 162156779 --atgtatgatt
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e macFas5.chr7               65398632 2606 + 171882078 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=7153.000000
s hg38.chr15_KI270850v1_alt    291220 32 +    430880 tcatatatacatcatatata-tcatacatatat
s ponAbe2.chr15              81557753 31 +  99152023 tcatatataaatcatatataatcata--tatat
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19252469 29 - 121039945 t-atatatatat-atatatatatata--tatat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65401238 29 + 171882078 ttatatatacatgaactttatatata--tat--
i macFas5.chr7              I 2606 C 0
s papAnu2.chr7               59700623 29 + 162156779 ttatatatacatgaactttatatata--tat--
i papAnu2.chr7              C 0 I 2
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=1306414.000000
s hg38.chr15_KI270850v1_alt    291252 1061 +    430880 atgaactttccagaataggtatatcaataaagacaggaagtatacaagtggttgccacagcctgagaggagcagggaatggtgagtgactgctaatggatatggcactttttttggggggtgatgaaaatgttctggtcagacaatggcaattacaaaactgtatacacacgaaaaaccaaagaatcacacactttaaaagggaggatttagctcggcatggtggcatgcgcctgtactcccagttactcgggaggctgaagcaggactgcttagagcccaggacttcaagg-------------------ctgcagcgagctatgatcgctccactgcactccaacaaggatgacagtgcgagacccGTTTTCT-AaataataataataataataataataaATAACCCAAGGTACCCAGTTCACATGCAAAACCACTGGTAAACATAAATTATCTCCAAGTAATCTAGAAAGAAAATGAGCACATAAGACGTCTTCTAAAAACACACATATATTTCTTTACATGTTACATTTAACGTAAAAATCAGCTATGCAGAAGTTACATGAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGAATGGTTAAGTACATTTATGTTTTTATGTACAAACGCATAAAAGGAAAAGCATCCTTAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACCTTTGTCTTCCTTCACAATTGAGCTTTATCCACCTTTTCAGGCTTATCTCCCATTATTACCTGACACAAACTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCCGACTATTCATCCAACACTATGTTCACTGCCTCCCATTCCTGACC-ATTTGCCTTTTGTCTTCAACTAATTCTGGGGACGTTTTGTCCAAATAAATGATCCATATTCTTGAAGGCTGGAATCAAGTCCTATTACAAATATATTTTCTCACCCTCTCCAGAGCATAGCAACCCAGCATCTACTGGCCTCTCACAGCTCTAACCATCCACAACCCTAAGCTGGCTTCTCATCAAACGGGTACTTTTCACCACCCAAATTCAA
s ponAbe2.chr15              81557784 1053 +  99152023 atgaactttccagaataggtatatcagtaaagacaggaagtacataagtggttgccacaggctgagaggagcagggaatggtgagtggctgctaatggatatggcactttttt-ggggggtgatgaaaatgttctggtcagacaatggcaattgcaaaactgtatacacatgaaaaaccaaagaatcacacactttaaaagggagaatttagctcggcatggtggcatgcgcctgtcctcccagttactcgggaggctgaagcaggactgctt-gagcccaggacttcaagg-------------------ctgcagcgagctatgatcgccccaccgcactccaacaaggatgacagcgcgagaccagttttctcaaaaaataa--ataa--aTAATAATAAATAACCCAAGGTACTCAGTTCACATGCAAAACCACTGGTAAACATAAATTATCTCCAAGTAATCTAGAAAGAAAATGAGCACATAAGACATCTTCTAAAAACACACATAT--TTCTTTACATGTTACATTTAACATAAAAATCAGCTATGCAGAAGTTACATGAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGAATGGTTAAGTACATTTATGTATTCATGTATAAATGCATAAAAGGAAAAGCATCCTTAAAATAAACACCATCAATGGCTCCTTGGTGGTCATAAAACAAA-TCCTCACACCTTTGTCTTCCTTCACAATTGAGTTTTATCCACCTTTTCAGGCTTATCTCACATTATTACCTGACACAAACTTGGGTGGGCCAGAGTTTCCACTCACCATCCCCCCACTATTCATCCAACACTATGTTCACTGCCTCCCATTCCTGACC-ATTTGCCTTTTGTCTTCAACTAATTCTGGGAAGGTTTTGTCCAACTAAATGACCCATATTCTTCAAGGCTGCAATCAAGTCCTATTACAAATATATTTTCTCACCCTCTCCAGAGCATAGCAACCCAGCATCTACTGGCCTCTCATAGCTCTAACCATCCACAACCCTAAGCTGGCTTCTCATCAAACAGGCACTTTTCACCACCCAAATTCAA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19252498 1057 - 121039945 atgaactttccagaataggtatatcaataaagacaggaagtatgtaagtggttgccacaggctgagaggagcagggaatggtgagtgactgctaatgggtatggcaccttttttgggggctgatgaaaatgttctggtcagacaatggtaattgcaaaactgtacacacacgaaaaaccaaacaatcacacactttaaaagggagaatttAgctcggcatagtggcatgcgcctgtactcccagttactcaggaggctgaagcaggactgctt-gagcccaggacttcaagg-------------------ctgcagcgagctatgatcactccaccgcactccaacaaggatgacagagtgagaccAGTTTTCTCaaaaaaaaa--aaaaaaaaaaaaaaaaaaaCCCCAAGGTACTCAGTTCACATGCAAAACCACTGGTAAACATAAATTATCTCCAAGTAATCTAGAAAGAAAATGTGCACATAAGACATCTTCTAAAAACACACATAT--TTCTTTACATGTTACATTTAACATAAAAATCAGCTATGCAGAAGTTACATAAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGAATGGTTAAGTACATTTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTTAAAATAAACACCATCAATGGCTCCTTGGTGGTCACAAAACAAAATCCTCACATCTTTGTCTTCCTTCACAATTGAGCTTTACCCATCTTTTCAGGCTTATCTCCCATTATTACCTGACACAAACTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCCCACTATTCATCCAACACTATGTTTACTGCCTCCCATTCCTGACC-ATTTGCCTTTTGTCTTCAACTAATTTGGGGGACGTTTTGTCCAACTAAATGATCCATATTCTTCAAGGCTGGAATCAAGTCCTATTACAAATATATTTTCTCACCCTCTCCAGAGCATAGCAACCCAGCATCTACTGGCCTCTCATAGCTCTAACCATCCACAACCCTAAGCTGGCTTCTCATCAAACGGGCACTTTTCACCACCCAAATTCAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65401267 1062 + 171882078 atgaactttccggaataggtatgtcaataaagacaagaagtatataagtggttgtcacaggctgagaggatcagggaatggcgagtgactgctaatgggtatggcactttatt-tgggggtgatgaaaatgttctggtcagacaatggtgattgcaaaactgtatacacacaaaaaaccaaagaatcacacgcttctaaagggaaaatttagctcggcatggtggcatgcacctgtactcccagttactcgggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagcgagctatgatcactgcagcgagctatgatcgctccaccgcactccaatgaggatgacagcgcaagacccgttctctcaaa--------aaaa--ataaaaataaaTAACCCAAGGTACTCAGTTCATATGCAAACCCGCTGGTAAACATAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTTCTAAAAAGGCACATATATTTCTTGACATGTTACATTCAACATAAAAATCAGCTATGCAGAAGTTACATTAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAG-------CAGTATAATTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACTTTTGTCTTCCTTCACAATTGAGCTTCATCCATCTTTTCAGGCGTATCTCCCATCATTACCTGACACAAACTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCTCACTATTCATCCAACACTATGTTCACTGCCTCCCATTCCTGACC-ATTTACCTTTTGTCTTCAACTAATTCTGGGGACGTTGTGTCCAACTAAATGATCCATATTCTTCAAGGCCGGAATCAAGTCCTATTACAAAGATATTCTCTCACCCTCTCCAGAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAAGCTGGCTTCTCATCAAACGGGCACTTTTCATCACCCAAATTCAA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59700654 1054 + 162156779 atgaactTTCCAGAATAGGTATGTCAATAAAGACAGGAAGTATATAAGTGGTTGTCACAGGCTGAGAGGATCAGGGAATGgcaagtgactgctaatgggtatggcaCTTtatt-tgggggtgatgaaaatgtactGGTCGGACAATGGTGATTGCAAAAC-GTATACACACGAAAAACCAAAGAATCACACGTTTCTAAAGGGAAAAtttagctcggcgtggtggcatgcacctgtactcccagttactcgggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagtgagctatgatcactgcagcgagctatgatcgcTCCACCGCACTCCAATGAGGATGACAGCGCAAGACCcgttctctcaaa--------aaaa--ataaaaataaataactcaaggTACTCAGTTCATATGCAAACCCGCTGGTAAACATGAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTtctaaaaacacacatatatttctagACATGttacatttaacataaaaatcaGCTATGCAGAAGTtacattaacattttatgttGGAAGGGTAAATGACTATTATTAATACAG-------CAg--------tgtatttatgtataaatgCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACTTTTGTCTTCCTTCACAATTGAGCTTCATCCATCTTTTCAGGCTTATCTCCCATCATTACCTGACACAAACTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCTCACTATTCATCCAACACTATGTTCACTGCCTCCCATTCCTGACCAATTTACCTTTTGTCTTCAACTAATTCTGGGGACGTTGTGTCCAACTAAATGATCCATATTCTTCAAGGCCGGAATCAAGTcctattacaaatatattttctcacccTCTCCAGAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAAGCTGGCTTCTCATCAAATGGGCACTTTTCATCACCCAAATTCAA
i papAnu2.chr7              I 2 C 0
s chlSab2.chr29               3879656 1060 +  24206276 atgaactttccagaataggtatgtcaataaagacaggaagtatataagtggttgtcacaggctgagtggatcagggaatggcaagtgactgctaatgggtatggcactttatt-tgggggtgatgaaaatgttctggtcagacaatggtgattgcaaaactgtatacacatgaaaaaccaaagaatcacacgcttctaaagggaaaatttagctcggcgtggtggcatgcacctgtactcccagttactcaggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagcgagctatgatcactgcagcgagctatgatcgctccaccgcactccaatgaggatgacagcgcaagacccgttctctcaaa--------aaaa--ttaaaaataaaTAACCCAAGGTACTCAGTTCATATGCAAACCCGCTGGTAAACATAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTTCTAAAAACACACATATATTTCTAGACATGTTACATTTAACATAAAAATCAGCTATGCAGAAGTTACATCAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATATAG-------CAGTATATTTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCAGAGGTCACAAAACAAAATCCTCACACTTTTGTCTTCCTTCACAATTGAGCTTCATCCATCTTTTCAGGCTTATCTCCCATTATTACCTGACACGAACTTGGGTGGGCC--AGTTTCCACTGACCATCCCCCCACTATTCACCCAACACTATGTTCACTGCCTCCCACTCCTGACC-ATTTACCTTTTGTCTTCAACTAATTCTGGGGACATTTTGTCCAACTAAATGATCCATATTCTTCAAGGCCGGAATCAAGTCCTATTACAAATATATTCTCTCACCCTCTCCAGAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAAGCTGGCTTCTCATCAAACGGGCACTTTTCACCACCCAAATTCAA
i chlSab2.chr29             I 2647 I 5626
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=1467538.000000
s hg38.chr15_KI270850v1_alt    292313 1175 +    430880 TTAATTCACTCTTACAATAATGAAGAATAGTCGCCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTTATC-----------------------AATTTTATCTTCAAAGTCCCTCACTTCAGGGAGATGATATATCAGCTTTCACCCAGAGTCCTAAAGAAAACAGCACTCTTGCCAATGACATAGTGCCACCTAGTGGCAACATAAGGTAAATCACAGTGGCAGTAGAAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAGCTACAGTACTGTTTGGCAGGACAATTTGTTTCATACGTGCATACTATCGCCCTG-ACTAAATTAACTCGCAAGTCTTACAGGTATTA-TTTGTTTTCAGTTCCATGCACAGATTAGCCATTTAGTACTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACACC-AATATATTCATGC----ACATATGGTTAAAATTTTCCTTGAGGATCTATCATGTGAGAGTGTGGCTTATTATAACAAGTAAACAGAACAAATAAATACAAAATGAAAAGAAATCGTATGATTTACTCGCATATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAGGACACTGAAACAGAAATGGAATAAATGAGAATAAAATTAAAAGTTGTCATCAAAAATATAGAAGCCATCTAAAGACCTAGGTGTCAAGCATAGCTCTATGAGTACAATCCCGTGCCTGAGATTACCATATGCCCAGCTGTATGCTATACACTAAGAGATTTAGGAAGGAAGCGGGGTCAGGGATTGACCCCAGACTCCATCTTTTCAAGTGGGGAAGAAAGATCTTCCGATTGAAAAATAAAGGCAAAAAAGGCTTCACCGTCACAGAAGTTTCAACAACCAACAGGATATTTAAAACAGTTATCAAAGCAAAACCATTGTATGTTCACTTACATTTTTACATAGTCCCTCAAACTCACAAAATGCTGTTTACTCAGGGACTTCTTCCGGTCTTACTAGGGAGCCTGGAAAGTGACGGGAGGATTGCAAGGGACCACTAGAACCCTCTTCCTCAATTCCCCTTCTCTGAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAAAGTTAATAGCCGGATTCCCTGAT---AGATATTTTCACTAAATGAATTCTCATAAAACTCTCACT
s ponAbe2.chr15              81558837 1177 +  99152023 TTAATTCACTCTTACAATAATAAAGAATAGTCGCCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTTATC-----------------------AATTTTATCTTCAAAGTCCCTCACTTCAGGGAGATGATATATCAGCTTTCACCCAGAGTCCTAAAGAAAACAGTACTCTTGCCAATGACATAGTGCCACCTAGTGGCAACATGAGGTAAATCACAGTGGCAGTAGGAGGATCTCCACACTACTTTTACAGAAATGAACTGCAGGTAAAAAATAAGAAGCTACAGTACTGTTTTGCAGGACAATTTGTTTCATACGTGCATACTATCGCCCTG-ACTAAATTAACTCTCAAGTCTTACAGGTATTA-TTTGTTTTCAGTTCCATGCACAGATTAGCCATTTAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACACC-AATATATTCATGCATATATATATGGTTAAAATTTTCCTTGAGAATCTATCATGTGAGAGTGTGGCTTATTATAACAAGTAAACAGAACAGATAAATACAAAATAATAAGAAATCTCATGATTTACTCACATATAAGGGAGCTTGCTGTGGATTAAGTTTCATGACCCAGGACACTGAAACAGAAATGGAATAAATGAGAATAAAATTAAAAATTGTCATCGAAAATATATAAGCCACCTAAAGTCCTAGGTGTCAAGCATAGCTCTATGAGTACAATCCTGTGCCCGAGATTACCATATGCCCAGCTGTATGCTATACACTAAGAGATTTAGGAAGGAAGCGGGGTCAGGGATTGACCCCAGACTCAATCTTTTCAAGTGGGGAAGAAAGATCTTCCGATTGAAAAATAAAGAC--AAAAGGCTTCACTGTCACAGAAGTTTCAACAACCAACAGGATATTTAAAACAGTTATCAAAGCAAAACCATTGTATGTTCACTTACATTTTTACGTAGTCCATCAAACACACAAAATGCTGTTTACTTAGGGACTTCTTACGGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAAGATTGCAAGGGACCACTAGAACTCTCTTCCTCAATTCCCCTTCTCTGAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGAACCTCCTCAAAGTTAATAGCTGGATCCCCTGAT---TGATATTTTCACTAAACGAATTCTCATAAAAATCTCATT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19253555 1153 - 121039945 TTAATTCACTCTTAGAATAATAAACAATAGTCGCCTACCGCCTACCTTTTCCAGCCTTGATTCAATCATTTATC-----------------------AATTTTATCTTCAAAGTCCCTCACTTTAGGGAGAT--------------------GAGTCCTAAAGAAAACAGCACTCTTGCCAATGACACAGTGCCACCTAGTTGCAACATAAGGTAAATCACAGTGGCAGTAGGAGGATCTCCACACCACTTTTACAGAAATGAACTGCAGGTAAAAAATAAGAAGCTACAGTACTGTTTGGCAGGACAATTTGTTTCATACGTGCATACTATCGCCCTG-ACTAAATTAACTCTCGAGTCTTACAGGTATTA-TTTGTTTTCAGTTCCATGCACAGATCAGCCATTTAGTATTCACTAAATCAAACTCAATTTCTGAAGTGTCTTACACC-AATATATTCATGC----ATATATGGTTAAAATTTTCCTTGAGAATCTATCATGTGAGAGTGTGGCTTATTATAACAAGTAAACAGAACAGATAAATACAAAATAATAAGAAATCTCATGATTTACTGACACATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAGGACACTGAAACAGAAATGGAATAAATGAGAATAAAATTAAAAGTTGTCATCGAAAATATATAAGCTACCTAAAGTCCTAGGTGTCAAGCATAGCTCTATGAGTACAATCCCGTGCTCGAGATTATGATATGCCCAGCTGTATGCTATACACTAAGAGACTTAGGAAGGAAGCGGGGTCAGGGATTGACCCCAGACTCAATCTTTTCAAGTGGGGAAGAAAGATCTTCCAATTGAAAAATAAAGAC--AAAAAGCTTCACTGTCACAGAAGTTTCAACAACCAACAGGATATTTAAAACAGTTATCCAAGCAAAACCACTGTATGTTCACTTACATTTTTACATAGTCCCTCAAACTCACAAAATGCTGTTTACTCAGGGACTTCTTACGGTCTTACTAGGGAGCCTGGAAAGTAAGGGGAGGATTGCAAGGGACCACTAGAACGCTCTTCCTCAATTCCCCTTCTCTGAGCAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCACGACCCTCCTCAAAGTTAATAGCTGGATTCCCTGAT---TGTTATGTTCACTAAATGAATTCTCATAAAAATCTCATT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65402329 1172 + 171882078 CTAATTCACTCTTACCATAATAAAGAATAGTCACCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTCATC-----------------------AATTTTATCTTTAAAGTCCCTCACTTTAGGGAGATGATATATCAGCTTTCACCCAGAGT-CTAAAGAAAACAGCCCTCTTGCCAATGACATAGTGCCATCTAGTTGCAACAAAAGGTAAATCACAGTGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAACTACAGTACTGTTTTGCAGGACAATTTGTTTCATATGTGCATACTATCGCCCTG-ACTAAATTAACTCTCAAGTCTTACAGGTATTA-TTTGTTTTCAGTTCCATGCACAGATTAGCCATTTAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACATC-AATGTATTCATGC----ATATATGGTTAAAATTTTCCTTGAGAATCTATCACGTGAGAGTGTGGCTTATTATAACAAGTAAACAGAACAGATAAATACAAAATGAAAAGAAATCTCATGATTTGCTCACATATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAAGACACTGAAACAGAAATGGAATAAATGAGAATAAAATCAAAAGTTGTCATCAAAAATACATGAGCCACCTAAAGTCCTAGGTGTCAAGCATAGCTCTATGAGTACAATCCCGTCCCCGAGCTCACCATATGCCCAGCTGTATGCCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTGATCCCAAACTCAATCTTTTCAAGTGGGGCAGAAAGATCTTCCAATTGAAAAATAAGGAC--AAAAGGTTTCACTGTCACAGAAGTTTCAACAACCAAAAGGATATTTAAA--AGTTATCAAAGGAAAACCATTGTATGTTCACTTACGTTTTTACCTAGTCCCTCAAACTCACAAAACGCTGTTTACTCAGGGACTTCTTCCAGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGCAAGGG-CCACTAGAAATCTCTTCCTCAATTCCCCTTCTCTAAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAGAGTTAATACCTGGATTCCCTGATTGTTGTTATTTTCACTAAATGAATTCTCATAAAAATCTCATT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59701708 1169 + 162156779 CTAATTCACTCTTACCATAATAAAGAATAGTCGCCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTCATC-----------------------AATTTTATCTTCAAAGTCCCTCACTTTAGGGAGATGATATATCAGCTTTCACCCAGAGT-CTAAAGAAAACAGCACTCTTGCCAATGACATAGTGCCATCTAGTTGCAACATAAGGTAAATCACAATGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAGCTACAGTACTGTTTTGCAGGACAATTTGTTTCATATGTGTATACTATCGCCCTGAACTAAATCAACTCTCAAGTCTTACAGGTATTA-TTTGTTTTCAGTTCCATGCACAGATTAGCCATGTAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACATCAAATATATTCATGC----ATATACGGTTAAAATTTTCCTTGAGAATCTATCACGTGAGAGTGTGGCTTATTATAACAAGTAAACAGAAcagataaatacaaaatgaaaagaaatctcaTGTTTTACTCACATATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAGGACACTGAAACAGAAATggaataaatgagaataaaatgaaaagttgtcATCAAAAATATATAAGCCACTGAAAGTCCTAGGTGTCAAGCATAGCTCTATGAGTACAATCCCGTCCCCGAGATTACCATATGCCCAGCTGTATGCCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTGGTCCCAAACTCAATCTTTTCAAGTGGGGAAGAAAGATCTTCCgattgaaaaataaagac--aaaaggtTTCACTGTCACAGAAGTTTCAACAACCAACAGTATATTTAAA--AGTTATCAAAGCAAAACCATTGTATGTTCACTTACGTTTTTACCTAGTCCCTCAAACTCACAAAACGCTGTTTACTCAGGGACTTCTTCCAGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGCAAGGG-CCACGAGAAATCTCTTCCTCAATTCCCCTTCTCTAAGAA-GGAGGCTACAGCTTGCCTCTCTAACCACTAAAA-GCGTGACCCTCCTCAGAGTTAATAGCTGGATTCCCTGAT--GTGTTATTTTCACT-AATGAATTCTCATAAAAATCCCATT
i papAnu2.chr7              C 0 M 179
s chlSab2.chr29               3886342 1194 +  24206276 CTAATTCACTCTTACCATAATAAAGAATAGTCGCCTACAGCCTACCTTTTCCAGCCttgattcaatcattcatcaattttgtcttcaatcattcattaattTTGTCTTCAAAGTCCCTCA-TTTAGGGAGATGATATATCAGCTTTCACCCAGAGTCCTAAAGAAAACAGCACTCTTGCCAATGACATAGTGCCATCTAGTTGCAACATAAGGTAAATCACAATGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAGCTACAGTACTGTTTTGGAAGACAATTTGCTTCATATGTGCATACTATCGCCCTG-ACTAAATTAACTCTCAAGTCTTACAGGTATTATTTTGTTTTCAGTTCCATGCACAGATTAGCCATTTAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACACA-AATATATTCATGG----ATACATGGTTAAAATTTTCCTTGAGAATCTATCACGTGAGAGTGTGGCTTATTATAACAAGTAAACAGAACAGATAAATACCAAATGAAAAGAAATCTCATGATTTGCTCACATATAAGGGAGATTGTTGTGGATTAAGTTTCATGACCCAAGACACTGAAACAGAAATGGAATAAATGAGAATAAAATCAAAAGTTGTCATCAAAAATACATGAGCCACCTAAAGTCCTAGGTGTCAAGCATAGCTCTATGAGTACACTCCCGTGCCTGAGATTACCATATGCCCAGCTGTATGCCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTGATCCCAAACTCAATCTTTTCAAGTGGGGAAGAAAGATCTTCCAATTGAAAAATAAGGAC--AAAAGGTTTCACTGTCACAGAAGTTTCAACAACCAACAGGATATTTAAA--AGTTATCAAAGGAAAACCATTGTAGGTTCACTTACGTTTTTACCTAGTCCCTCAAACTCACAAAATGCTGTTTACTCAGGGACTTCTTC--GTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGCAAGGG-CCACAAGAACTCTCTTCCTTAATTCCCCTTCTCTAAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAGAGTTAATAGCTGGATTCCCTGATTGTTGTTATTTTCACTAAATGAATTCTCATAAAAATCCCATT
i chlSab2.chr29             I 5626 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556    0 -  40214260 I
e panTro4.chr15              80068048 12869 +  99548318 I

a score=46604.000000
s hg38.chr15_KI270850v1_alt    293488 55 +    430880 AAGATTTAGAGAAGGCTTCCAGGGTTGAATTCCTGAACATTAAGAACAGCATGTT
s ponAbe2.chr15              81560014 54 +  99152023 AAGATTTAGAGAAGGCTTCCAGGGTTGAATTCCTGAACATTAAGAATAGCATG-T
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19254708 54 - 121039945 AAGATTTAGAGAAGGCTTCCAGGGTTGAATTCCTGAACGTTAAGAATAGCATG-T
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65403501 54 + 171882078 AAGATTTAGAGAAGGCTTCCAGGGTTGAATTCCTGAACATTAAGAATAGCATG-T
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3887536 54 +  24206276 ACGATTTAGAGAAGGCTTCCAGGGTTGACTTCCTGAACATTAAGAATAGCATG-T
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e canFam3.chr30               1743556  0 -  40214260 I
e papAnu2.chr7               59702877 179 + 162156779 M
e panTro4.chr15              80068048 12869 +  99548318 I

a score=509898.000000
s hg38.chr15_KI270850v1_alt   293543 435 +    430880 TTTTAAAAGTTTAACTTGGTGATTGGACCAGGACTTCATCTAGGCTATGAATGCTCAGAATGGTAGGTCCTTTACCAAACAGCTTGAGTTTGTGTATAAAGTGATCTCATCCTCTTAAGAGTCAGAGAAACAGAACCAA--GCGACT-----------------------TCACTATAATTTGATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGGCACATACTAACCAGCAATATAAACAACAATATCAAGTGTCATTCACACATG-----------------CAAAAAACAGACAAAATCCCAAACTCTGTGTTCTAACAAATCGCAAAAACCTCACTAACAATAAATTGAAATGACCAAATGTTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCCATGCCTAACTCAAATAACAGAACCATCTCGATGTTAAAATCCT-----------CACAGATCAAGCTGTGTATGTCTCGGGT
s ponAbe2.chr15             81560068 446 +  99152023 TCTTAAAAGTTTAACTTAGTGATTGGACCAGGACTTCATCTAGGCTATAAATGCTCAGAATGATAGGTCCTTTACCAAACACCCTGAGTTTGAGTATAAAGTGATCTCATCCTCTTAAGAGTCAGAGAAACAGAACCAA--GTGACT-----------------------TTACTATAATTTGATCTGAGGAAGTTTCTCACTCACAATAGGTAAATGAAGGCACATACTAACCAGCAATATAAACAACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATAACAAACTTTGTGTTCTAACAAATCACAAAAGCCTCACTTACAATAAACTGAAATGACCAAATGTTTGGACTGGAAAGCAATGCCTTGGTAGCCTAGCCATGCCTAACTCAAATAACAGAACCATCTCCATATTACAATCCTCACAGATCTGCCACAGATCAAGCTGTGTATGTCTCGGAT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19254762 435 - 121039945 TCTTAAAAGTTTCACTTGGTGATTGGACCAGGACCTCATCTAGGCTCTAAACGCTCAGAATGGTAGGTCCTTTACCAAACACCCTGAGTTTGAGTATAAAGTGATCTCATGCTCTTAAGAGTCAGAGAAACAGAACCAA--GTGACT-----------------------TCACTATAATTTAATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGGCACATACTAACCAGCAATATCAACAACAGTATAAAGTGTCATTCATATACG-----------------CAAAAAACAGACAAAATCCCAAACTCTGTGTTCTAACAAATCACAAAAGCCTCACTAACAATACATTGAAATGACCAAATGTTTGGACTGAAAAGTAATGCCTTGGTAGCCCAGCCATGCCTAACTCAAATAACAGAACCATCTCGATGTTAAAATCCT-----------CACAGATCAAGCTGTGTATGTCTCGGAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65403555 469 + 171882078 TCTTAAAAGTTGAACTTGGAGATTGGGCCAGGACTTCATCTAGGCTATAAATGCTCACAATGGTAGGTCCTTTACCAAACATCCTGAATTAGAGTATAAAGTGATCTCATCCTCTTAAGAGTCAGAGAAACAGAACCAG--GTGACTGTTTCTATAATCACTTGGTTCTGTTTCTATAATTTGATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGACACATACTAACCAGCAATAAAAACGACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCTGTGTTCTAACAAATCACAAAAGCCTCATTAACAATAAATTGAAATGACCAAATGTTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCTATGCCTAACTCAAATAACAGAACCCTCTCGATATTAAAATCCTCACAGATCTGCCACAGATCAAGCTGTGTATGTCTCAGAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              3887590 471 +  24206276 TCTTAAAAGTTGAACTTGGAGATTGGGCCAGGACTTCATCTAGGCTATAAATGCTCACAATGGTAGGTCCTTCACCAAACACCCTGAATTAGAGTATAAAGTGATCTCATCCTCTTAAGAGTCAGAGAAACAGAACCAAGTGTGACTGTTTCTATAGTCACTTGGTTCTGTTTCTATAATTTGATCTAAGGAAGTTTCTTACTCACAATAGGTAAATGAAGGCACATACTAACCAGCAATATAAGGGACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCTGTGTTCTAACAAATCACAAAAGCCTCACTAACAACAAATTGAAATGACCAAATGTTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCTATGCCTAACTCAAATAACAGAACCCTCTCGATATTAAAATCCTCACAGACCTGCCACAGATCAAGCTGTGTATGTCTCAGAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18119788 447 + 132174527 TCTTAAAAGTTTAACTTGGTGATTTGA-CAGGACTTCAACTAGGCTATAAATGCTCTGAATGGTAGGTCCTT-ACCAACTACCCTGAATTTGAGTATAAAGTGATTTCGTCCTCTTAAGAGTCAGAGAAACAGACCAAA--GTGACT-----------------------TCACTATAATTTGATCTGAAGAAGTTTCTTATTCACAATAGGTAAATGAAAGCATATACTGACCAGCAATACAAAC---------ATGTATCATTCAGACATGGaaaaaaaaaaaaaaaaaaaaaaaCAGACAAAATCCCAAACTGTGTGTTCTAACAAATCACAAAAGCCTCACTAACAATAAATTGAAATGACCAAATGTTTGGAATGAAAAGCAATGCCTTGGT-----AGCTATGCATAACTCAAATAACAGAACTCTCTTATTATTAAAATCCTCACAGGTCTGCCACAGATCAAGCTGTGTATGTCTCAGAT
i calJac3.chr10             I 83844 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e papAnu2.chr7              59702877 179 + 162156779 M
e panTro4.chr15             80068048 12869 +  99548318 I

a score=1240222.000000
s hg38.chr15_KI270850v1_alt   293978 755 +    430880 CAAGACTTCGCCAAAAAGCAGTGAGCACACACTTAAGAGGGAAAAAATCTACCTCAGCCTCCTAAATGC-AATCATCTCTACACGAGTTGCAGGCCCCAAGCTTCAACGTGTTCTGCTGGACAACGCAGTAGAAAGCTGACAAGCAGGTGGCCTTCCCACACTGACTGAACCACCTCCA------TGCCCATGTCCATTCATTTTCTTGCCCACCCCATGTGCTATAACAGACCTCCTGGCTCAGGGCACTCTTTCCTTCCTGACTGCCTTCACTTAATGACTTTGTACTTTTAGGTGCAAAAATTATCTGCAGAAATCCACACTGAAAACCAAGCTTGAGAAAGGCAGCAAT----AACCAACATTTTTACAAGAAGAACAAGGTCAATATCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGCTTGAGTGCC-TTCTTAATGTATTAAATATCCATTTAATTTACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTAGGACATGGGAATGAAAGAACCTATACATTTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCATCAAGCAGAAGAAACATCAGTGAAACTGATACAGGAATTAACCCCTTGTTAATCCATAAAACTTAAAGGagcgggatccaatcttctggcttccctgggccacgctg---gaagaagaattgtcttgcgccacacataaaatacac
s ponAbe2.chr15             81560514 754 +  99152023 CACGACTTCGCCAAAAAGCAGTTAGCACACACTTAAAAGGG-AAAAATCTACATCAGCCTCCTAAATGC-AATCATCTCCACACCAGTTGCAGGCCCCAAGCTTCAATGTGTTCTGCTGGACAACGCAGTAGAAAGCTGAGAAGCAGGTGGCTTTCCCACACTGACTGAACCACCTCCA------TGCCGATGCCCATTCATTCTCTGGTCCACCCCATGCGCTA-AACAGACCTCCTGCCTCAGGGCACTCTTTCCTTCCTGACTGTCTTCACTTAATGACTTTGTACTTTTAGGTGCAAAAATTATCTGCAGAAATCCACACTGAAAACCAAGCTTGAGAAAGGCAGCAATAACCAACCAACATTTTTAC---AAGAACAAGGTCAATTTCAAGCCCATCAGATTCAAAGAGCAAGCATGGATGAAAATGAAAGATTGAAAGGTTTGAGTGCC-TTCTCAATGTATTAAATATCCATTTAATTTACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCCAGGACATGGGAATGAAAGAACCTATAAATTTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCATCAAGCAGAAGAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAAAAATTAAAGGAGCAgtatccaatcttctggcttccctgggccacactg---gaagaagaattgtgttgcgccacacataaaatatac
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19255197 758 - 121039945 CAAGACTTCACCAAAAAGCAGTGAGCACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCATCTCCACACCAGTTGCAGGTCCCAAGCTTCAGTGTGTTCTGCTGGACAACGTAGTAGAAAGCTGACAAGCAGGTGGCTTTCCCACACTGACTGAACCACCTCCA------TGCCCATGCCCATTCATTCTCTGGTCCACCCCATGCGCTACAACAGACCTCCTGGCTCAGGGTACTCTTTCCTTCCTGACTGCCGTCACTTAATGACTTTGTACTTTTAGGTGCAAATATTATCTGCAGAAATCCACACTGAAAACCAAACTTGGGAAAGACAGCAAT----AACCAACGTTTTTACAAGAAGAACAAGATCAATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGCCTGAGTGCC-TTCTCAATGTATTACATATCTATTTAATTTACAATTAAGCTCACTGTGTTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTAGGACATGGGAATGAAAGCACCTATAAATTTATGGACCAGTCTACCTTAACTAACTTGTCAAGTGTTCCTGCATCAAGTAGAAGAAACATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAAAAATTAAAGGagtggtatccaatcttctggcttccctgggccacactggaagaagaagaattgtgttgtgccacacataaaatacac
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65404024 754 + 171882078 CAAGACTTTGCCAAAAAGCAGTTAACACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCACCTCCACACCAGTTGCAGGTCCCAAGCTTCAATGTGTTCTGCTGGACAACGCAGTAGAAAGCTGACAAGCAGGTGGCTTTCCCACACTGACTGAACCACCTCCG------GGCCCATGCCCATTCATTCTCTGGTCCACCCCATGCTTTATAACAGACCTCGTGGCTCAGGGTACTCTTTCCTTCCTGACTGCCTTCACTTAATGACTTTGTAACTTTAGGTGTAAAAATTATCTGCAGAAATCCACACTGAAAACCAAGCTTGCGAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAACA--GTCAATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGTTTGAGGACC-TTATCAATGTATTAAATATCCATTTAATTTACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTGGGACATGGGAATGAAAGAACCCATAAATGTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCATCAAGCAGAAGAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAAAAATTAAAGGagcggtatccaatcttctggcttccctgggccacactg------gaagaactgtcttgcaccacacataaaatacac
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59703056 753 + 162156779 CAAGACTTTGCCAAAAAGCAGTTAACACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCACCTCCACACCAGTTGCAGGTCCCAAGCTTCAATGTGTTCTGCTGGACAACGCAGTAGAAAACTGACAAGCAGGTGGCTTTCCCACACTGACTGAACCACCTCCA------TGCTCATGCCCATTCATTCTCTGGTCCACCCCATGCGCTATAGCAGACCTCCT-GCTCAGGGTACTCTTTCCTTCCTTACTGCCTTCACttaatgactttgtaactttaggTGTAAAAATTATCTGCAGAAATCCACACTGAAAACCAAGCTTGCTAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAACA--GTCAATTTCAAGCCCATCAAATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGTTTGAGGACC-TTATCAATGTATTAAATATCCATTTAATTTACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTGggacatggaaatgaaagaaccCATACATTTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCATTGAGCAGAAGAAATATCAGTGAAACTGATACAGGAATTAACACCTTGttaatccataaaaattaaaggaGCGGTATCCAATcttctggcttccctgggccacactg------gaagaactgtcttgcaccacacataaaatacac
i papAnu2.chr7              M 179 C 0
s chlSab2.chr29              3888061 753 +  24206276 CAAGACTTTGCCAAAAAGCAGTTAACACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCATCTCCACACCAGTTGCAGGTCCCAAGCTTCAATGTGTTCTGCTGGACAACGCAGTAGAAAGCTGACAAGCAGGTGGCTTTCCCACACTGACTGAACCACCTCCA------TGCTCATGCCCATTCATTCTCTGGTCCACCCCATGCGCTGTAACAGACCTCCT-GCTCAGGGTACTCTTTCCTTCCTTACTGCCTTCACTTAATGACTTTGTACTTTTTGCTGCAAAAATTATCTGCAGAAATCCACACTGAAAACCAAGCTTGAAAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAACA--GTCAATTTCAAGCCCATCAGATTCAAACAGTAAGCATGGATGAAAATGAAAGATTGAAAGGTTTGAGGACC-TTATCAATGTATTAAATATCCATTTAATTTACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTAGGACATGGAAATGAAAGAACCCATAAATGTATGGACCAATCTACCTTAACTAACTAGTCAAGTGTTCCTGCATCAAGCAGAAGAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAAAAATTAAAGGagtggtatccaatcgtctggcttcccttggccacactg------gaagaactgtcttgcaccacacataaaatacac
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18120235 709 + 132174527 CAAGACTTGGCCAAAGAGCAGTTAACACACACTTAGAGGGAAAATAATCTACATCAGCCTCCTAAATGCAAATAATCTCCACACCAGTCGCAAGCCCCAACCTAGAATGTGTTCTGCTGAACAACACAGTAGGAAGGTGACACACAGGTGGCTTTCTTACACTGACTGAACCAACTCCATCCTCGTGTCCATGCCCATTCGTTTTCTGGTTCACTCGATACCCCATAACAGACCTCCTGGCTAGGAGTACTCTTTCCTTTCTAACTGCCTTCACTTAATGACTCTGTACTTTAAGGTGCAAAAATTATCTGCAGGAATCCACACTGAAACCCAAGCTTGAGAAACGTAGCAATAAC-AAAAAACATTTTTAGAAAAAGAACA--GTCAATTTCAAGCCCATCAGATTCAAACAGCAAGCATGAATGAAAAAGAAAGATCGAAAAGCTTGAGTACCTTTCTCAATGTATTAAATATCCATTTAATTTAAAATTAAGC---------TCACTGGCCTTTGAATGAGCTTTCCAGATCCTGCTCAGACTTGCCTATGACATAGGAATGAAAGAACCTATGAATTTATGAACTAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCATCAAGCAGAAG----------------------------------------------AAAAATTAAAGGAGCAgtgtccaatcttctggcttccctgggccacactg---gaaaaagaattgtctttggccacataaaaaatacac
i calJac3.chr10             C 0 I 1515
e canFam3.chr30              1743556   0 -  40214260 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=67028.000000
s hg38.chr15_KI270850v1_alt   294733 59 +    430880 gaacactaataatagctgctaagcttt---------aaaaaaattgcaaaaaaggaaaatctca-taat
s ponAbe2.chr15             81561268 60 +  99152023 taacactaataatagctgataagcttt---------aaaaaaattgcaaaacaagaaaatctcattaat
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19255955 60 - 121039945 taacactagtaatagctgctaagcttt---------aaaaaaattgcaaaaaaagaaaatctcattaat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65404778 63 + 171882078 taacactaataatagccgctaagcttt-----aaaaaaaaaaattgcaaaaaaagaaaatctca-caat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59703809 66 + 162156779 taacactaataatagctgctaagcttt--aaaaaaaaaaaaaattgcaaaaaaagaaaatctca-caat
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3888814 68 +  24206276 taacactaataatagccgctaagctttaaaaaaaaaaaaaaaattgcaaaaaaagaaaatctca-caat
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             18120944 1515 + 132174527 I
e canFam3.chr30              1743556  0 -  40214260 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=18168.000000
s hg38.chr15_KI270850v1_alt   294792 12 +    430880 tttttgtttgtt
s ponAbe2.chr15             81561328 12 +  99152023 tttttgtttgtt
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19256015 12 - 121039945 tttttgtttgtt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65404841 12 + 171882078 tttttgtttgtt
i macFas5.chr7              C 0 I 4
s papAnu2.chr7              59703875 12 + 162156779 tttttgtttgtt
i papAnu2.chr7              C 0 I 4
s chlSab2.chr29              3888882 12 +  24206276 tttttGTTTGTT
i chlSab2.chr29             C 0 I 1365
s calJac3.chr10             18122459 11 + 132174527 TCtttgttttt-
i calJac3.chr10             I 1515 C 0
e canFam3.chr30              1743556  0 -  40214260 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=110493.000000
s hg38.chr15_KI270850v1_alt   294804 98 +    430880 gtgaggtggagcctcactctgtcacccaggccggagtgcagtggcaccatcttggctcactgcaacctctgcctcctgggttcaagccattctcctgc
s ponAbe2.chr15             81561340 98 +  99152023 ttgagatggagtctcactctgtcacccaggctggagtgcagtggcactatctcggctcactgcaacctctgcctcctgcgttcaagcgattctcctgc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19256027 98 - 121039945 ttgagatggagtctcactctgtcacccaggctggagtgcagtggcaccatcttggctcactgcaacctctgccgcctgggttcaagtgattctcctgc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65404857 98 + 171882078 tggaaatggagtctcactctgtcacccaggctggagtgcagtggcatgatcctggctcactgcaacctctgcctcctgggttcaagcgattctcctgc
i macFas5.chr7              I 4 C 0
s papAnu2.chr7              59703891 98 + 162156779 tggaaatggagtctcactctgtcacccaggctggagtgcagtggcatgatcctggctcactgcaacctctgcctcctgggttcaagcgattctcctgc
i papAnu2.chr7              I 4 C 0
s calJac3.chr10             18122470 89 + 132174527 --aagacagagtctcaccctgttgcccaggctttagtgcagtagtataatcttggctta-------ctctgcctcctggattcaagcaattctcctgc
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556  0 -  40214260 I
e chlSab2.chr29              3888894 1365 +  24206276 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=2640886.000000
s hg38.chr15_KI270850v1_alt   294902 1623 +    430880 ctcagcctcccgagtagctgggatgataggcgtgtgccaccatgcccagctaattttcgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccggccaatgttttaagaacgtttacgaatttgtattgggccacattcaaagccttcacaggctgcatgcagcctgcaggccgcggttggacaagcttgGATTAGAGAAATCTACAGAGACAAACTAGTGACTTAGTAGCCCTCTGATAGCTCATGATTTGCAAGAAACTTAGGATGACTATGTGTAAAGACCACAAACATCAATTTAACTGAATGGTTCCCGCCACACTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTCTAAGAAAGGGCTGATGTCATCTGAACTGTTCGGAATTATAAACTCCTCTAAACATGTTTCAAAGCCAGAACTTGTAGGAGTTGTTCTGATACACGGATTAAAAGAGGGATGACAAAGTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGTCATTGTTATGCTGGCAATGCAGGCTGCTGAAAAGAATGTATCTGTCAAAAGTAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTCAGGTTGCTTTCAGACTTCCACAATGCTGGCACACAAGGGGAAAGACAAAACTAACATTTACagagcattatatttgatattacatttaatccccattaaaaagatactatttccc--gtttcactagtg-aaaaagttgatctttcaaaggttaaattatttaacaccaaggtcaaagggtaagttggagagaccagattcaaacccagtctgacattaaaacatgtgt--tttccccccacatcG--------TCTCCTGCTAATAACCTCAAATCTAAAAACTGACTTGCCCTACACCTTGAG-CCCCATCCTACAAACTCTCCCTGACGTTATTAATTCAGCTGtcactgtgcacctacaacgtgccagacaccatactcctcaacactctgtaggcacagaaggaacagataaaaatccctaccttcatagatattattctaggggtaacacaggtaaataaaacatta----aaatagttttcacatagtagcaaattccatatagcaaaataaaacagaagaaggaatagcaaatgagggagatgccctcttaaacatggtgctgagggaaggcctccctgagaa-agatatcatttaccccaaaaataaaaaagcaagtaatag-aaaaaacaggtaaaaggtgttcta------------------------------------------------------------gacaCTT-AAACCTGCC---ACATTGAGAACTCAGGGTTCTGATGCAAAACCTCGCTGCATAGAATGCATTAACTTATTTTTATACATTTAAACAAACAAACTCTACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTAC-AGGAAGGCAATTTTTGGTCAGAGTAGACACACTTAAAAACTAAACCTATTGAAAGACCAAGAACAACTGAAAGTCTTTGCTTTGTCAGATTTTTGAC----------CAAAAGGAAAATT-----------------AAAGA-------AACACACCGTGCCCATCCAATGATTTCACCAAGGAATTTTA
s ponAbe2.chr15             81561438 1621 +  99152023 ctcagtctcccaagtagctgggattataggcgcgtgccaccacgcccaggtaatttttgtatttttagtaaagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccggc-----------gaaagtttacgaatttgtattgggccactttcaaagccttcacaggctgcatgcagcctgcaggccgcggttagacaagcttgGATTAGAGAAATCTACAGAGACAAACTAGTGACTTAGCAGCCCTCTGATCTCTCGTGATTTGCAAGAAACTTAGGATGACTATGTGTAAAGACCACAAACATCAATTTAACTGAATGGTTCCCGCCACACTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTCTAAGAAAGGGCTGATGTCATCTGAACTGTTTGCAATTATAAACTCCTCTAAACATGTTTCAAAGCCAGAACTCGTAAGAGTCGTTCTGATACACGGATTAAAGGAGGGATGACAAAGTGTCTGTCC-CTCACACTGGTCAAAGGGACAGGTCATTGTTATGCTGGCAACGCAGGCTGCTGAAAAGAATGTATCTGTCAAAAGTAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTCAGGTTGCTTTCAGACGTCCACAATGCTGGCACACAAGGGGAAAGACAAAACTAACATTTACagagcattatatttgatattgcatttaatccccattaaaaagatactatttcccctatttcactagtg-aaaaaattgatctttcaaatgttaaatcatttaacaccaaggtcaaagggtaagttggagagaccagattcaaacccagtctgacattaaaacatg-gg--tttcccccaACATCGTAAGAGGATCTCCTGCTAATGACCTCAAATCTAAAAACTGACTTGCCCTACACCTCAAG-CCCCATCCTACAAACTCTCCCTGACGTTGTTAATTCAGCTGtcactgtgcacctacaatgtgccagacagcatactcctcaagactctgtaggcacagaaggaacagacaaaaatccctacctccatagatattattctaggggtaacacaggtaaataaaacattaaaataaatagttttcacatagtaacaaattctataaagaaaaataaaacagaagaaggaatagcaaatgagggagacacccttttaaacatggtgctgagggaaggcccccctgag-a-agatatcatttACCCCAATAATAAAAAAGCAAGTAACAGAAAAAAACAGGTAAAAGGTGTTCTA------------------------------------------------------------GACACTT-AAACCTGCCACAACATTGAGAACTCAGGGTTCTGATGCAAAACCTCACTGCATATAATGTATTACCTTA-TTTTATACATTT----AAACAAACTCTACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTAC-AGGAAGGCAGTTTTTGGTCAGAGTAAACACACTGAAAAACTAAACCTATTGAAAGAACAAAACCAATTGAAAGTC--TGCTTTGTCAGATTTTTGAC----------CAAAAGGAAAATT-----------------AAAGA-------AACACACCATGCCCATTCAATGATTTCACCAAGGAATTTTA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19256125 1606 - 121039945 ctcagcctcccgagtagctgggattataggcgcgtgccaccacgcccagctaatttttgtacttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccggccaatgttttaagaaagtttacgaatttgtattgggccacattcaaagccttcacaggctgcatgcagcctgcaggccgcggttggacaagcttgGATTAGAGAAATCTACAGAGACAAACTAGTGACTTAGTAGCCCTCTGATGTTTCGTGATTTGCAAGAAACTTAGGATGACTATGTGTAAAGACCACAGACATCAATTTAACTGAATGGTTCCCACCACACTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTCTAAGAAAGGGCTGATGTCATCTGAACTGTTTGGAATTATAAACTCCTCTAAACATGTTTCAAAGCCAGAACTCGTAAGAGTTGTTCTGATACACGGATTAAAAGAGGGATGACAAAGTGTCTGTCC-CTCACACTGGTCAAAGGGACAGGTCACTGTTATGCTGGCAATACAGACTGCTGAAAAGAATGTATCTGTCAAAAGTAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTCAGGTTGCTTTCAAACTTCCACAATGCTGGCACACAAGGGGAAAGACAAAACTAACATTTACagagcattatatttgatattacacttaatccccattaaaaagatactatttcccctatttcactagtg-aaaaaattgatctttcaaaggttaaatcatttaacaccaaggtcaaagggtaagttggagagaccagattcaaacccagtctgacgttaaaacatg-ggtttttccctccacatcaTAAGAAGATTTCCTGCTAATGACCTCAAATCTAAAAATTGA--------------------------CTACAAACTCTCCCTGACATTGTTAATTCAGCTGtcattgtgcacctacaatgtgccagacaccatactcctcaagactctgcaggcacagaaggaacagacaaaaatccctaccttcatagatattattctaggggtaacacagataaataaaacattaaaataaatagttttcacatagtaacaaattctatagagaaaaataaaacagaagaaggaatagcaaatgagggagacgccattttaaacatggtgctgagggaagacctccctgaa-a-agatatcatttaccccaaaaataaaaaagcaagtaatag-aaataacaggtgaaaggtgttcta------------------------------------------------------------gacaCTT-AAACCTGCCACAACACTGAGAACTC--GGTTCTGATGCAAAACCTCGCTGCATATAATGGATTAACTTA-TTTTATACATTTAAACAAACAAACTCTACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTAC-AGGAAGGCAGTTTTTGGTCAGAGTAAACACACTGAAAAACTAAACCTATTGAAAGACCAAGACCAATTGAAAGTCTTTGCT------GATTTTTGAC----------CAAAAGGAAAATT-----------------AAAGA-------AACACACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65404955 1678 + 171882078 ctcagcctcccaagtagctgggattataggcgcatgccaccacgcccagctaatttttgtatttttagtagag-------------atgctggccaggctggtctcgaactcctg-cctcaggtgatccacccgcctcggcctcctaaagtgctaggattacaggcgtgagccaccatgcccggccaatgttttaagaaagtttgtgaatttgtgttgggccacattcaaagccttcacaggctgcatgcagcctgcaggacgcagttggacaagcttgGATTAGAGAAATCTACAAAGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTGCAAGAAACTTAGGATGACTATGCATAAAGACGACAAACATCAATTTAACTGAATGGTTCCCACCACATTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTATAAGAAAGGGCTGATGTCATCTGAACTGTTTGAAATTATAAACTCCTCTAAATATATTTCAAAGCCAGAACTCATAAGAGTTGTTCTGACACACGGATTAAAAAAGGGATGACAAAGTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGACATTGTTATGCTGGCAACACAAGCTGCTGAAAAGAATGTATCTGTCAAAAGGAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATGCAGGTTGCTTTTAGACTTCCACAATGCTGGCACACAAGGAGAAAGACAAAACTAACATTCACAGAGCATTATATTTTAtattacatttaatccccattaaaaagatagtatttcccctacttcaccactg-aaaaaactgatctttcaaaggttacattatttaacaccaaggtcaaagggtaagttggagagaccagatccaaacccagtctgatgttaaaacatgtgt--ttttcccccacatcaTAAGAGGATCTCCTGCTAATGACCTCAAATCTAAAAACTGACTTGCCCTACACCTCGAGCCCCCATCCTACAAACTCTCCCTGAAGTTGTTAAATCAGCTGtcattgtgcacccacaatgtgccagacaccatactcctcaagattctgtagggacagaaggaacagacaaaaatctctacctccatagatattattctaggggt-acacaggtaaataaaacattaaaataaatagctttcacacagtaacaaattctatagagaaaaataaaac---acaaggaatagcaaatgaaggagatgccattttaaacatggtgctgagggaaggccaccctgagaa-agatatcatttacctcaaaaataaaaaagcaagtaagag-aAAAATCAGGTAAAAGATGTTTTACCTTTTAACATCTTTAAGTGTTTTACCTTTAAGTGTCACCTTACTTTAAAAGTAAAAGGTGACACTT-AAACCTGCCACAACATTGAGAACTCAGGGTTCTGATGTGAAACCTCACTGCATATAATGCATTAACTTA-TTTTATACATTT----AAACAAACTCTACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTAC-AGGAAGGCAGTTTTCGGTCAGAGTAAACACACTTAAAAACTAAATCTATTGAAAGACCAAGACCCACTGAAAGTCTTTGCTTTGTCAGATTTTTGAC----------CAAAAGGAAAATT-----------------AAAGA-------AACACACCATGCCCATCCAGTGATTTCACCAAGGAATTTTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59703989 1678 + 162156779 ctcagcctcccgagtagctgggattataggcgcatgccaccacgcccagctaatttttgtatttttagtagag-------------atgctggccaggctggtctcgaactcctg-cctcaggtgatccacccgcctcggcctcctaaagtgttaggattacaggcgtgagccaccatgcccggccaatgttttaagaaagtttgtgaatttgtgttgggccacattcaaagccttCACAGGCTGCATGCAGCCTGCAGGACGCAGTTGGACAAGCTTGGATTAGAGAAATCTACAAAGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTGCAAGAAACTTAGGATGACTATGCATAAAGACGACAAACATCAATTTAACTGAATGGTTCCCACCACATTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTATAAGAAAGGGCTGATGTCACCTGAACTGTTTGAAATTATAAACTCctctaaatatatttcaaagccAGAACTCATAAGAGTTGTTCTGATACATGGATTAAAAGAGGGATGACAAAGTGTCTGTCC-CCCATACTGATCAAAGGGACAGGACATTGTTATGCTGGCAACACAAGCTGCTGAAAATAATGTTTCTGTCAAAAGGAATCAAAGTAATGACCCCAGGAGGCTCCAGAAACAGACTGGTAAATGCAGGTTGCTTTTAGACTTCCACAATGCTGGcacacaaggagaaagaaaaaactaacatTCACAgagcattatattttatattacatttaatcCCCATTAAAAAGATACTATTTCCCCTACTTCACCACTG-AAAAAACTGATCTTTCAAAGGTTACATTATTTAACACCAAGGTCAAAGGGTAAGTTGGAGAGACCAGATCCAAATCCAGTCTGATGTTAAAACATGTGT--TTTTCCCCCACATCATAAGAGGATCTCCTGCTAATGACCTCAAATCTAAAACCTGACTTGCCCTACACCTCGAGCCCCCATCCTACAAACTCTCCCTGATGTTGTTAATTCAGCTGTCATTGTGCACCCACAATGTGCCAGACACCATACTCCTCAAGATTCTGTAGGTACAGAAggaacagacaaaaatctctacCTCCATAGATATTATTCTAGGGGT-ACACaggtaaataaaacattaaaataaatagcttTCACACAGTAACAAAttctatagagaaaaataaaac---acaaggaaTAGCAAATGAAGGAGATGCCATTTTAAACATGGTGCTGAGGGAAGGCCACCCTGAGAA-AGATATCATttaccccaaaaataaaaaagcaagtaaGAG-AAAAATCAGGTAAAAGATGTTTTACCTTTTAACATCTTTAAGTGTTTTACCTTTAAGTGTCGCCttactttaaaagtaaaaggtGACACTT-AAACTGGCCACAACATTGAGAACTCAGGGTTCTGATGCAAAACCTCGCTGCATATAATGCATTaactta-ttttatacattt----aaacaaACTCTACTTAAGAACAGTTTTCTAAAGGAAGGAGCATATTAC-AGGAAGGCAGTTTTCGGTCAGAGTAAACACACTTAAAAACTAAACCTATTGAAAGACCAAGACCCACTGAAAGTCTTTGCTTTGTCAGATTTTTgac----------caaaaggaaaatt-----------------aaaga-------aacacaCCATGCCCATCCAATGAGTTCACCAAGgaatttta
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3890259 1674 +  24206276 ctcagcctcccgagtagctgggattataggcgcatgccaccacacccagttaatttttgtatttttagtagag-------------atgttggccaggctggtctcgaactcctg-cctcaggtgatccacccgcctcagcctcctaaagtgctaggattacacgtgtgagccaccatgcccggccCatgttttaagaaagtttgtgaatttgtgttgggccacattcaaagccttcacaggctgcatgcagcctgcaggacgcagttggacaagcttgGATTAGAGAAATCTACACAGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTGCAAGAAACTTAGGATGACGATGTGGAAAGACGACAAACATCAATTTAACTGAAAGGTTCCCACCACATTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTAT----AAGGGCTGATGTCATCTGAACTGTTTGAAATTATAAACTCCTCTAAATATATTTCAAAGCCAGAACTCATAAGAGTTGTTCTGATACACGGATTAAAAGAGGGATGACAAAGTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGACATTGTTATGCTGGCAACACAGGCTGCTGAAAAGAATTTATCTGTCAAAAGGAATCAGAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTTAGGTTGCTTTTAGACTTCCACAATGCTGGCACACAAGGAGAAAGAAAAAACTAACATTCACAGAGCATTATATTTTAtattacatttaatccccattaaaaagatactatttcccctacttcaccactgaaaaaaactgatctttcaaaggttacattatttaacaccaaggtcaaagggtaagttggagagaccagatccaaacccagtctgatgttaaaacatgtgt--ttttcccccacatcaTAAGAGGATCTCCTGCTAATGACCTCAAATCTAAAAACTGACTTGCCCTACACCTCCAG-CCCCATCCTACAAACTCTCCCTGAAGTTGTTAATTCAGCTGtcattgtgcacccacaatgtgccagacaccatactcctcaagattctgtaggtacagaaggaacagacaaaaatcgctacctccatagagactattctaggggt-acacaggtaaataaaacattaaaataaatagctttcacacagtaacaaattctatagagaaaaataaaac---acaaggaatagcaaatgaaggagatgccattttaaacatggtgctgagggaaggccaccctgagaa-agatatcatttaccccaaaaataaaaaagcaagtaagag-aAAAATCAGGTAAAAGATGTTTTACCTTTTAACATCTTTAAGTGTTTTACCTTTAAGTGTCACCTTACTTTAAAAGTAAGAGGTGACACTT-AAACCTGCCACAACATTGAGAACTCAGGGTTCTGATGCAAAACCTCACTGCATATAATGCGTTAACTTA-TTTTATACATTG----AAACAAACTCTACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTAC-AGGAAGGCAGTTTTCGGTCAGAGTAAACACACTTAAAAACTAAACCTATTGAAAGACCAAGACCCACTGAAAGTCTTTGCTTTGTCAGATTTTTGAC----------CAAAAGGAAAATT-----------------AAACA-------AACACACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i chlSab2.chr29             I 1365 I 10
s calJac3.chr10             18122559 1619 + 132174527 ctcagcctcccaagtagctgggattacaggctcccatcaccatgcccagttaattt------tttaagtagagaaagggtttcaccatgttggacagactggtctcaaactcctgacctcaggtgatctacctgccttggcttcccaaagttctgggattacaggtatgagccaccgggcacagccaatgttttcagaaagtttatgaacttgtgttgggccacattcaaagcctt------------------tgcaggctgcggctggacaagcttgGATTAGAAAAATCTACAGAGACAAACCAATGACTTAGCAGACCTCTGATGTTTCATGATCTGCAAGAAACTTAGGATGACTATGCGTAAAGACCACAGACTTCAATTTAACTAAATGGTTCCCACCGCATTGGAATGAGGAAACTGAGCAAACTCAGAGGACTCTAAAGAAGAGCTGATGTCATCTGAACTGTTTGGAATTATAAACTCCTCTAAACATATTTCAAAGCCAGAACTCTTAAGAGTTGTTCTGATACATGGATTAAAAGAGGGATGACAAACTGTCTGTCCTCCCACACTGGTCAAAGGTACAGGTCATTGTTACGTTGGCAACATAGGCTGCTGAAAAGAATGTATCTGTCAAAAGTAATCA-AGTAATGACCCCAGAGCGCTCCAGAAAGAAACTGGTAAGTTCAGGTTGCTTTTAGACTTTTACAATGCTGGCACATAAGGGGAAAGACAAAACTAACAtgtacagagcattatgtttgatattacatttaatcctcattaaaaaga---tatttcccccatttcactcgtg-aaaaaactgatctttcaaaggttaaattatttaacaccaacgtcaaagggtaagttgaaga-accagattcaaacccagtctgacactaaaacatgtgt-ttttcccttcacatcaTAAGACAATCTCCTGCTAACAACCTCAAATCTAA------ACTTGCCCTACACCTCTAG-CTCCATTCTACAAACTCTCCATGACATTGttaattcagc-attattgtgcatctacagtgtaccaca----------ctcgaagctctgcaggtacagaaggatccgagaaaaatccctaccttcgtagatattattctaggggtaacacaagtaaataaaacatt-----gaatagttttcagatagtaacaaattctgtagagaaaaataaaacagaagaagaaatagcaaatgagggggatggcaatttaaacatggtgctgagggaaggcctccctgagaaCAGTTACCGCCCCCCCT-------CAAAAATAGGTAACAG-AAATAACAGGTAAAAAGTGTTCTG------------------------------------------------------------CACACTTAAAACTTGCCACAACATTGAGAACTCAGGGTTC-GATGCAAAACTTTGCTGCATATAATGCATTCACTTA-TTTTACACATTTAAACAAACTCACTCTACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAAAGAAGGCAGGTTTTGGTCAGAGTAAACATACTTAATAACTAAACATATTGAAAGACCAAGACCAACTGAAAGTCTTTGCTTTGTCAGATTTTTGACCAAGCCTTTACAAAAGGAAAATTTTTAATTTTCCTTTTTAAAATGGTGTTTTAAAATACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556    0 -  40214260 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=484721.000000
s hg38.chr15_KI270850v1_alt   296525 282 +    430880 AGAGAGAAAATCCTACTTCTTCCTCACCCAGTAGCCAGTGAAATGACTGAGCAAATTCACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAACACATGACAGACACAGTGGAACCCTACAGGTTGCCTAGTATTTGAAAGACTGTGAAGAGGAGGAG--ATGTCAAAATTCAAAGTCTTAAATGATGTAGTTTTAAGTATGTTCAGCAATTTCACCACTCAGTAGTAAAGCCAGCTACAGTTGAAAGCAATCAGAAATTTGAGGGGTGTGAAATAAGC
s ponAbe2.chr15             81563059 280 +  99152023 AGAGAGAAAATCCTACTTCTTCCTTACCCAGGAACCAGTGAAATGACTGAGCAAATCCACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAATACATGACAGACACAGTGGAACCCTACAGGTTGCCTAGTATTTAAAAGAC--TGAAGAGGAGGAA--ATGTCAAAATTCAAAGTCTTAAATGATGTGGTTTTAAGTATGTTCAGCAATTTCACCACTCTGTAGTAAAGCCAGCTATAGTTGTAAGGAATCAGAAATATGACGGGTGGGAAATAAGC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19257731 278 - 121039945 AGAGAGAAGATCCTACTTCTTCCTCACCCAGTAGCCAGTGAAATGACTGAGCAAATTCACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAGTACATGACAG--ACAGTGGAACCCTACAGGTTGCCTAGTATTTGAAAGAC--TGAAGAGGAGAAA--ATGTCAAAATTCAAAGTCTTAAATGATGTGGTTTTAAGTATGTTCATCAATTTCAGCACTCAGTAGTAAAGCCAGCTACAGTTGTAAGGAATCAGAAATTTGAGTGGTGGGAAATAAGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65406633 282 + 171882078 AGAGAGAAAATCCTACTTCTTCCTCACCCAGTAGCCAGTGAAATGACTGAGCAAATTCACAAGTTCACTGGGGCTGTTTTCATGTAACACAGGGACAACACACGACAGAGACAGTGGAACCCTACAGGTTGCCTAGTATTTGAAAGAATGTGAAGAGGAGGAA--ATGTCAAAATGCAAAGTCTTAAATGATGTGGTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTATAGTTGTAAGGAATCAGAAATATGAGGGGTGTGAAATAAGC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59705667 282 + 162156779 agagagaaaatccTACTTCTTCCTCACCCAGTAGCCAGTGAAATGACTGAGAAAATTCACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAACACATGACAGAGACAGTGGAACCCTACAGGATGCCTAGTATTTGAAAGACTATGAAGAGGAAGAA--ACGTCAAAATTCAAAGTCTTAAATGATGTTGTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTATAGTTGTAAGGAATCAGAAATATGAGGGGTGTGAAATAAGC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20103177 282 -  24206276 AGAGAGAAAATCCTACTTCTTCCTCACCCAGTAGCCAGTGAAATGACTGAGCAAATTCACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAACACATGACAGACACAATGGAACCCTACAGGTTGCCTAGTATTTGAAAGACTGTGAAGAGGAGGAA--ATGTCAAAATTCAAAGTCTTAAATGATGTGCTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTATAGTTGTAAGGAATCAGAAATTTGAGGGGTGTGAAATAAGC
i chlSab2.chr29             n 10 C 0
s calJac3.chr10             18124178 284 + 132174527 AGGGAGAAAATCCTACTTCTTCCTTACCCTGTAACCAGTGAAATGACTGAGCAAATTCACAAGGTCACTGGGGCTACTTTCATGTAACACAGAAACAGTACATGACAGACACAGTGGCACAGCACAGGTTGCCTACTATTTGAAAGACTGTCAAGAGGAGGAAATATGTCAAAATTCAAAGTCTTAAATGATATGGTTTTAACTATGTTCATCAATTTTACCACTCAGTAGTAAAGTCAACTACAGTTATAAGGAATCAGAAATTTGAGGGGTATGAAATAAGC
i calJac3.chr10             C 0 I 180
e canFam3.chr30              1743556   0 -  40214260 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=158068.000000
s hg38.chr15_KI270850v1_alt   296807 126 +    430880 AGAAGCACAGAAGTTAAGGATTTGTATTCTTCCCACATTTTCCACTTTATTTTATACTGCTGAGAAAAAACAAA-TTTAATAGTTTTCTGCTGTATAAGAGAGACACATTCACTTTATGTCACAGTA
s ponAbe2.chr15             81563339 127 +  99152023 AGAAGCACAGTAGTTAAGGATTTGTATTCTTCCCACCTTTTCCACTTTATTTTATACTGATGAGAAAAAACAAATTTTAACAGTTTTCTGCTGTATAAAAGAGACACATTCACTTAATGTCAAAATA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19258009 126 - 121039945 AGAAGCACAGTAGTTAAGGATTTGTATTCTTCCCACATTTTCCACTTTATTTTATACTGATGAGAAAAAACAAA-TTTAGTAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65406915 126 + 171882078 AGAAGCACACTAGTTAAGGACTTGTATTCTTCCCACATTTTCCACTTTATTTTATAATGCTGAGAAAAAACACA-TTTAATAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59705949 126 + 162156779 AGAAGCACACTAGTTAAGGATTTGTATTCTTCCCacattttccactttattttataatgctgagaaaaaacaca-tttaatagTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20103459 126 -  24206276 AGAAGCATACTAGTTAAGGATTTGTATTCTTCCCACATTTTCCACTTTATTTTATAATGCTGAGAAAAAACACA-TCTAATAGTTTCCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             18124462 180 + 132174527 I
e canFam3.chr30              1743556   0 -  40214260 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=709494.000000
s hg38.chr15_KI270850v1_alt   296933 441 +    430880 AGAGTCACTCAATTTTAATACAACTATCTCAATGTATAAATTAACATTCTCCCCC-CTGCCCACACATAGTAAGTCTCTTATGATGTTGCTGATTAGAGAAGCAAAAGTTGCCGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTCTTTTCTTCATAGAGTGCAGTGTGGGCACTATCATCAGAATGTACCAGCACTGGGTGTGCAAAGTTTACAAAGATTAGCAAGAGCAAAAGTGTTGAGATTTTTGAAATTCATGCTG-CTGCAAAGAAGTATGTAAAAACTCACTCACCATAGAGGACCACACAGAAACTCAGGCATGAAGTTATATGGCTGTGTGAGTGGTTTGGGAGAAGGAACGGAAAGCACTTCCACCAACCTAT-ATGCCTGAGCAAATTAATGCAAAACCTCAGAAGCTACAAAAAAGTTTAT
s ponAbe2.chr15             81563466 441 +  99152023 AGAATCACTCAATTTTAACACAACTATCTCAATTTATAAATTAACATTCTCCCCCATTGCCCACACATAGTAAGTCTCTTATGGTGTTGTTGATTAGAGAAGCAAAA-TTGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCATTCTTTTCTTCATAGAGTGTAGTGTGGACACCATCATCAGAATGTACCAGCGCTGGGTGTGCAAAGTTTACAAAGATTAGCAATAGCAAAAGTTTGGAGATTTTTGAAATTCATGCTG-CTGCAAAGAACTATGTAAAAACTCAATCACTACAGAGGACCACAGAGAAACTCAGGCATGAAGTTACATGGCTGTGTGATTGGTTTGGGAGAAGGAACAGAAAGCACTTCCACCAACCTAT-ATGCCTGAGCAAATTAATGCAAAACCTCAGAAGCTACAAAAAAGTTTAT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19258135 438 - 121039945 AGAGTCACTCAATTTTAATACAACTATCTCAATTTATAAATTAACATTCTCCCCCATTGACCACACACAGTAAGTCTCTTATGGTGGTGTTGATTAGAGAAGGAAAAGTTGCTGCTACAATTCTCTTCCTACATTTTAATAT----AATCATCAGTCTTCTCTTCATAGAGTGCAGTGTGGACACCATCATCAGAATGTACCAGCGCTGGGTGTGCAAAGTTTACAAAGATTAGCAATAGCAAAA-TTTGGAGATTTTTGAAATTCATGCTGCCTGCAAAGAACTATGTAAAAACTCAATCACTATAGAGGACCACACAGAAACTCAGGCATGAAGTTATATGGCTGTGTGATTGGTTTGGGAGAAGGAACAGAAAGCACTTCCACCAACCTAT-ATGCCTGAGCAAATAAATGCAAAACCTCAGAAGCTACAAAAAAGTTTAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65407041 434 + 171882078 --AGTCACTCGATTTTAATACAACTATCTCAATTTATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAG---TGTTGATTAGAAAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTCTTTTCTTCATAGAGTGCAGTGTGGACAC---CATCAGAATGTACCAGCGCTGGGTATGCAAAGTTCACAAAGATTAGCAATAGCAAAAGTTTGGAGATTTTTGAAATGTATGCTGCCTGCAAAGAACTATGTAAAAACTCAGTCTCTATAGGGGACCACACAGAAACTCAGGCATGAAGTTACATGGTTGTGTGATTGG-TTGGGAGAAGGAACAGAAAGCACTTCCACCAACCCAT-ATGTCTGAGCAAATGACTGCAAAACCTTGGAAGCTACAAAACAGTTTAT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59706075 434 + 162156779 --AGTCACTCGATTTTAATACAACTAtctcaatttataaattaacattCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAG---TGTTGATTAGAGAAGCAAAAGTCGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTCTTTTCTTCATAGAGTGCAGTGTGGACAC---CATCAGAATGTACCAGCGCTGGGTATGCAAAGTTCACAAAGATTAGCAATAGCAAAAGTTTGGAGATTTTTGAAATGTATGCTGCCTGCAAAGAACTATGTAAAAACTCAATCTCTATAGGGGACCACACAGAAACTCAGGCATGAAGTTACATGGTTGTGTGATTGG-TTGGGAGAAGGAACAGAAAGCACTTCCACCAACCCAT-ATGTCTGAGCAAATGACTGCAAAACCTTGGAAGCTACAAAACAGTTTAT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20103585 437 -  24206276 AGAGTCACTCGATTTTAATACAACTATCTCAATTTATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAG---TGTTGATTAGAGAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATACAAACAATCATCAGTCTTTTCTTCATAGAGTGCAGTGTGGACAC---CATCAGAATGTACCAGTGCTGGGTATGCAAAGTTCACAAAGATTAGCAATAGCAAAAGTTTGGAGATTTTTGAAATGTATGCTGCCTGCAAAGAACTATGTAAAAACTCAATCACTATAGAGGACCACACAGAAACTCAGGCATGAAGTTACATGGTTGTGTGATTGG-TTGGGAGAAGGAACAGAAAGCATTTCCACCAACTCATAATGTCTGAGCAAATGACTGCAAAACTTCAGAAGCTATGAAAATGTTTAT
i chlSab2.chr29             C 0 I 2
s calJac3.chr10             18124642 433 + 132174527 agactcATTCAATTTTAATACAACTATCTCAATTTATAAATTAACATTCTCCCACACTGCCCACATATATTAAGTCTCTTATGGTGTTCCCGATTAGAGAAGCAAAACTTGTGGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTCTTTTCTTCACAGAATGTAGTGTGAACACCATCATCAGAATGCACCAGC-CTAGGTGTGC-AAGTTTACAAAGATTAGCAATAGCAAAAGTTTTGGGATTTCTTAAGTTCAAGCTGCCTGCAAAGAACTATGTAAAAACTCAATCACTAGAGAGGACCACACAGAAACTCAGCCATGAAGTTACATCGCTGTG-GATTGG-------GAGATAACAGAAAGCATCTCCACCAACCCAT-ATGCCTGAGCAAATGAATACAAAACCTCAAAAGCTACAGAAATGTTAAT
i calJac3.chr10             I 180 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=254121.000000
s hg38.chr15_KI270850v1_alt   297374 216 +    430880 CTACCTAAATTAAAATTGGTGTCCACAGcagtagccagcaaaatgcctgcgaagcgcaaagtggtaaatattttagggtctgtaggtcatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaaacttcatttataaaaagaggcagcatggtacatccagtcagcaagctataatgtaccaacccccgGTCTAAC
s ponAbe2.chr15             81563907 216 +  99152023 ATGCCTAAATTAAAATTGGTGTCCACAGcagtagtcagcaaagtgcctgcgaagtgcatagtggtaaatattttaggctctgtaggttatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttctaataaaactttatttataaaaagaggcagcatgttacatccagtcagcaagctataatgtaccaacccctgGTCTAAA
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19258573 216 - 121039945 ATACCTAAATTAAAATTGGTGCCCACAGcagtggtcagcaaagtgcctgtgaagcgcaaattggtaaatgttttaggctctgtaggtactatgatctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaaactttatttataaaaagaggcagcatgttacatccagtcaacaagctataatgtaccaacccctgGTCTAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65407475 211 + 171882078 ATACC-----TAAAATTGGTGTCCACAGcagtggtcagcaaagtgcctgtgaagcgcaaatgggtaaatattttaggctctgcaggtcatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaagatttatttataaaaagaggcagcatgttaaatccagtcagcaagctataatgtaccaacccctgCTCTAAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59706509 211 + 162156779 ATACC-----TAAAATTGGTGTCCACAGCAGTGGTCAGCAAAGTGCCTGTGAAGCGCAAatgggtaaatattttaggctctgcaggtcatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaagatttatttataaaaagaggcAGCATGTTAAATCCAGTCAGCAAGCTATAATGTACCAACCCCTGGTCTAAC
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             18125075 210 + 132174527 ATACCTAAATTAAAACTGGTGTCCACAGcagtggtcagcaaagtgcctgagaagcgcaaactggtaagtattttaggctctgaaggtcatatggtctctgttaaacaacatgtaaatgagtaggtgtgactgtgttccaacaaaactttat------aaaaaggcagcaagttacatccagtcagcaaggtataacataccaacctctgGTCTAAC
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e chlSab2.chr29             20104022   2 -  24206276 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=490921.000000
s hg38.chr15_KI270850v1_alt   297590 323 +    430880 ACTAACCAAATACCTCTTAATAAGCCAAAGAAAC--TGTGTCCTCTTAggccggaagcggtggctcacacctataatcccagcattttgggaggccgag-------gcggggagatcacctgaggtcaggagttt-gagaccatcctggccaacatggtgaaaccctatttctactaaaaa-tac-aaaaattagccaggcgtgctggcgggcgcctgtaatgccaactactggggaggctgaagcacgagaatcgcttgaacccaggaggcagaggttgcagcgagcctagatcacgccattgcactccagcctgggcaacaagagagaaactc
s ponAbe2.chr15             81564123 325 +  99152023 ACTAACCAAATACCTCTTAATAAGCCAAAGAAACAGTGTGTCCTCTTAggccggaagtagtggctcacgcctataatcccagcattctgggaggccgag-------gcggggagattacctgaggtcaggagttt-gagacgatcctggccaacatggtgaaaccttatttctaataaaca-tac-aaaaattagccaggcgtggtggcgggcgcctgtaatcccacttactggggaggctgaagcacgagaatcgcgtgaacccaggaggcagaggttgcagcaagccgagatcacgccattgcactccagcctgggcaacaagagagaaactc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19258789 331 - 121039945 ACTAACCAAATACCTCTTAATAAGCCAAAGAAACAGTGTGTCCTCTTAGG-cggatgtggtggctcacacctataatcccagcattttgggaggccgaaatcacctgcggggagatcacctgaggtcaggagttt-gagaccatcctggccaacatggtgaaaccctatttctactaaaaa-tac-aaaaattagccaggcatggtggcaggcgcctgtaatcccagctactgggaaggctgaagcatgaggactgcttgaacccaggaggcagaggttgcagtgagccgagatcacgccattgcactccagcctgggcaacaagagagaaacca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65407686 324 + 171882078 ACTAACCAAATACCTCTTAATAAGCC-AAGAAACAGTGTGTCCTCTTGggccagaagcggtggctcacgcctgtaatcccagcattttgggaggctgag-------gcgggcagatcacctgaggtcaggagttt-gagaccatcctggccaacatggtgaaaccctgtttctactaaaaa-tac-aaaaattagccaggcgtggtagcaggcgcctgtaatcccagctaatggggaggctgaagcacgagaatcacttgaacccaggaggcagaggttgcagtgagatgagatcacaccattgcattccagcctgggcaacaagagagaaactg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59706720 324 + 162156779 ACTAACCAAATACCTCTTAATAAGCC-AAGAAACAGTGTGTCCTCTTGGGCcagaagcggtggctcacgcctgtaatcccagcattttgggaggctaag-------gcaggcagatcacctgaggtcaggagttt-gagaccatcctggccaacatggtgaaaccctgtttctactaaaaa-tac-aaaaattagccaggcgtggtagcaggcgcctgtaatcccagcctatggggaggctgaagcacgagaatcacttgaacccacgaggcagaggttgcagtgagatgagatcacgccattgcactccagcctgggcaacaagagagaaactg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20104024 324 -  24206276 ACTAACCAAATGCCCCTTAATAAGCCAAAGAAACACTGTGTCCCCTTAggttggatgctgtggcacatacctgtaatcccagaattttgggaggccaag-------gcaggtacatcacctca-gtcaggagttt-gagaccatcctggccaacatggtgaaaccccatctctataaaaaa-tac-aaaaattagccgagtgtggtggcaggcacctgtaatcccagttactggggaggctgaagcatgagaatcatttgaacctgggaggcagaggttgcagtgagcccagatggcaccattgcactccagcctgggcaacaagagagaaactc
i chlSab2.chr29             I 2 I 87699
s calJac3.chr10             18125285 311 + 132174527 ACTAACCAAATACCTCTTAATAAGCCAAAGAA----------------ggctgggcacagtggctcacacctgtaatcctagcactttaggaggccaag-------gtgggtagattgcctgagctcaggagtttcgagactagcctgggcaacacagtgaaactccgcctctactaaaaactacaaaaaattagccaggcgtggcggcatgcacctgtagtcccagctactcaggaggctgaggcaggagaattccaagaacccaggaggcggaggttgcagtgagccaagatcatgccactgcactccagtctgggtggcaa-agtgagactc
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=9701.000000
s hg38.chr15_KI270850v1_alt   297913 22 +    430880 cgtctc------a-----aaaaaaaa----aaaggaa
s ponAbe2.chr15             81564448 25 +  99152023 tgtctc---aaaa-----aaaaaaaa----aaaaaaa
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19259120 19 - 121039945 t---ta------a-----aaaaaaaa----aaaaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65408010 28 + 171882078 cgtctcagaaaaa-----aaaaaaag----aaagaaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59707044 33 + 162156779 cgtctcagaaaaagaaagaaagaaag----aaagaaa
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             18125596 26 + 132174527 catctc------c-----aaaaaaaaTGTCAAAGAAA
i calJac3.chr10             C 0 I 97540
e canFam3.chr30              1743556  0 -  40214260 I
e chlSab2.chr29             20104348 87699 -  24206276 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=6508.000000
s hg38.chr15_KI270850v1_alt   297935 9 +    430880 ataaaagta
s ponAbe2.chr15             81564473 9 +  99152023 aaaaaagta
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19259139 9 - 121039945 aaaaaaGca
i nomLeu3.chr6              C 0 I 7475
s macFas5.chr7              65408038 9 + 171882078 ataaaagta
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59707077 9 + 162156779 ataaaagta
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             18125622 97540 + 132174527 I
e canFam3.chr30              1743556 0 -  40214260 I
e chlSab2.chr29             20104348 87699 -  24206276 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=200291.000000
s hg38.chr15_KI270850v1_alt   297944 407 +    430880 tacaaagtgaaaacaaagaaattaaactgccctt--atttgccagtgacattactgtctatgcacaaaattccaaaaatctacaaaaaagcttctagtactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatataacataaaatcaccttcctatatactagcaatcaccaactggaaattgagaagtatcattcacaacagtaccacaa-acatgaaataaatgtgtaagatttcaaaatacaagcaagatccaactgctaaaaactacaaaacactgacgaaaaatctaagaaggtctaaataaatagatataccatgttcatggctcattattaaaatgtcagttgcctcctaactgatttccagtttcaatgcaatgtcaatcaaaaaccccagca
s ponAbe2.chr15             81564482 405 +  99152023 tacaaagtg-aaacgaagaaattaaagtgccctt--atttgctagtgacattactgtctacgcacaaaaatccaaaaatctacaaaaaagcttctagtactaaaaat--gtttagcaaggttgtagaatccaagatcagcatataacataaaatcatcttcatatatactagcaatgaccaactggaaattgagaagtatcattcacaacagtaccacaacacatgaaataaatgtgtaagattacaaaatacatgcaagatccaattgctaaaaactacaaaacactgaagaaaaatctaagaaggtctaactaaatagatataccatgttcatggctcattattaaaatgtcaattgcctcctaactgatttccagcttcaatgcaatgccaatcaaaaaccccagca
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              65408047 406 + 171882078 tacaaagtgaaaatgaagaaattaaactgcccttaaatttggcagtgacattactgtccatgcacaaaattccaaaaatttacaaaaaagcttctagcactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatgtaacataaaatcatcttcctatagcctagcaacgaccaactggaaattgaaaagtatcattcacaacagcatcacaacccatgaaataaatatataagattacaaaatacatgcaagatccaattgctaaaaactacaaaatactgatgaaaaatctaaaaaggtctaaataaatagatataccatgctcatggctcgttattaaaacgtcaattgcctc----ctgatttccagcttcaatgcaatgccaatcaaaaaccccagca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59707086 404 + 162156779 tacaaagtgaaaatgaagaaattaaactgCCCTT--ATTTGCCAGTGACATTACTGTCTATGCACAAAATTccaaaaatctacaaaaaagctTCTAGTACTAaaaatgagtttagcaaggttgtAGAATCCAAGGTCAGCATGTAACATAAAATCATCTTCCTATATCCTAGCAATGACCAACTGGAAATTGAAAAGTATCATTCACAACAGCATCACAAcccatgaaataaatatataagattaCAAAATACATGCAAGATCCAAttgctaaaaactacaaaatactgatgaaaaatCTAAGAAGgtctaaataaatagatataccatgctcatggctCGTTATTAAAACGTCAATTGCCTC----CTGATTTCCAGCTTCAATGCAATGCCAATCAAAAACCCCagca
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             18125622 97540 + 132174527 I
e canFam3.chr30              1743556   0 -  40214260 I
e chlSab2.chr29             20104348 87699 -  24206276 I
e nomLeu3.chr6              19259148 7475 - 121039945 I
e panTro4.chr15             80068048 12869 +  99548318 I

a score=214957.000000
s hg38.chr15_KI270850v1_alt   298351 255 +    430880 ggct-----------ctcacgcctgtaagccctacactttgggagaccatggtgggaggattgcttcatcccgggagtttgagaccaggctgggcaacatagagagaccctgtctctacaaaaataaaaaaattagccaggcatggcggtgcatgcatgtgatcccagctacttgggaggctgaggtgggataatcgcttggttcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggacac
s panTro4.chr15             80080917 253 +  99548318 GGCT-----------ctcacgcctgtaa-ccctacactt-gggagaccatggtgggaggattgcttcatcccgggagtttgagaccaggctgggcaacatagagagaccctgtctctacaaaaataaaaaaattagccaggcatggcggtgcatgcatgtgatcccagctacttgggaggctgaggtgggataattgcttggttcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggaccc
i panTro4.chr15             I 12869 C 0
s ponAbe2.chr15             81564887 266 +  99152023 ggctgggcatggtggctcacgcctgtaagccctacactttgggagaccatggtgggaagactgcttcatcccgggagtttgagaccagcctggacaacatagagagaccctgtctctacaaaaataaaaaaattagccaggcatggtggtgcatgcatgtgatcccagctacttgggaggccgaggtgggataattgcttggttcaaggctgcagtgagcagtgatcctgccactgtgtttcagcctgggcaactgagtgggaccc
i ponAbe2.chr15             C 0 I 6
s macFas5.chr7              65408453 266 + 171882078 ggctgagcatggtggctcacacctgtaagccctacactttgggagttcacggtgagaggatcacttcatccaaggagtttaagagcagcctgggcaacatagagagatcctctctctacaaaaacaaaaaaattagccaggcatggtggtgcatgcatgtgagcccagttacttgggaggctgaggtgggataatcacttgggtcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggaccc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59707490 266 + 162156779 ggctgagcatggtggctcacacctgtaagccctacactttgggagttcacgatgagaggatcacttcatccaaggagtttaagaccagcctgggcaacacagagagatcctctctctacaaaaacaaaaaaattagccaggcatggtggtgcatgcatgtgagcccagttacttgggaggctgaggtgggataatcacttgggtcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggaccc
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             18125622 97540 + 132174527 I
e canFam3.chr30              1743556   0 -  40214260 I
e chlSab2.chr29             20104348 87699 -  24206276 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=11329.000000
s hg38.chr15_KI270850v1_alt   298606 14 +    430880 tttttttttttttt
s panTro4.chr15             80081170 14 +  99548318 ttttcttttctttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81565159 14 +  99152023 tttttttttttttt
i ponAbe2.chr15             I 6 C 0
s macFas5.chr7              65408719 11 + 171882078 ---tatctttcttt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59707756 11 + 162156779 ---tatctttcttt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20192047 14 -  24206276 tttttttttttttt
i chlSab2.chr29             I 87699 C 0
e calJac3.chr10             18125622 97540 + 132174527 I
e canFam3.chr30              1743556  0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=802402.000000
s hg38.chr15_KI270850v1_alt   298620 481 +    430880 ttttttttttgagacaaggtctcgctctgtcgaccaggctggagtgaagtggtgc------aatctcggctcactgcaacctccatctcctgggtt-caagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccatgcccagctaatttttctgtttttagtagaaacggggtttcaccatgttggccaggctggtcttgaactcctgaactcaagtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcaccaggccATGAAAC--ACTTTCTTCCACCCACGGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAG--AGAGAGAGAGGGAAGCTACTTCCAAATGGATGCCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGCTAGATGTTAACTTTAAAAGAAGGAAACATCAAAAGTCCAAGTT
s panTro4.chr15             80081184 481 +  99548318 ttttttttttgagacaaggtctcgctctgtcgaccaggctggagtgaagtggtgc------aatctcggctcactgcaacctccatctcctgggtt-caagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccatgcccagctaatttttctgtttttagtagaaacggggtttcaccatgttggccaggctggtcttgaactcctgaactcaagtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcaccaggccATGAAAC--ACTTTCTTCCACCCACGGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAG--AGAGAGAGAGGGAAGCTACTTCCAAATGGATGCCTGTCCTCATCAGTAATAACCAAGTCTATTCAAGTGCTAGATGTTAACTTTAAAAGAAGGAAACATCAAAAGTCCAAGTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81565173 487 +  99152023 tcttctttttgagacgagatctcgctctgtcgaccaggctggagtgaagtgaagtggagtgaatcttggctcactgcaacctccatctcccgggtt-caagcgattctcctgcctcagtctcccaagtagctgggattacaggtgcctgccaccatgcccagctaatttttctgtttttagtagagacggggtttcgccatgttggccaggctggtcttgaactcctgaactcaagtgatctacccaccttggcctcccaaagtgctgggattacaggcatgagccactgcgccaggccATGAAACAAACTTTCTTCCATCCACGGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAA----AGAGAGAGAGGGAAGCTACTTCCAAATAGACGCCTGTCCCCATTAGTAATAACCAAGTCTATTCAAGTGCTAGATGTTAACTTTAAAAGAAGGAAACATAAAAAGTCCAAGTT
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              65408730 485 + 171882078 cttcttttttgagacgaggtcttgctctgtccaccaggctgaagaaaagtggtgc------aatctcagctcactgcaacctccactgaccgggtt-caagtaattctcctgcctcagcctcccaagcagctgagattacaggtgaccgccaccatgcccagctaatttttctatttttagtagagacggggtttcgccatgttggccaggctggtcttgaactcctgaactcaagtgacccacccacctcggcctcccaaagtgctgggattacaggcatcagccaccacgccaggcTATGAAACAAACTTTCTTCCACCCACAGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAGACAGAGAGAGAGGAAAGCTACTTCCAAATGGATGTCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGCTAGATGTTAACTTTAAAAGAAGGGAACATCAAAAGTCCAAGTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59707767 485 + 162156779 cttcttttttgagacgaggtcttgctctgtccaccaggctgaagtgaagtggtgc------aatctcagctcactgcaacctccactgactgggtt-caagcaattctcctgcctcagcctcccaagtagctgagattacaggtgaccgccaccatgcccagctaatttttctatttttagtagagacagggtttcgccatgttggccaggctggtcttgaacttctgaactcaagtgatccacccgcctcagcctcccaaaatgctgggattacaagcatcagccactgtgccaggctatgAAACAAACTTTCTTCCACCCacagctttctcttctctccccattTACAGCAGTAAGAGAGCCTAAcctgggaaagacagagagagagggaagctACTTCCAAATGGATGCCCGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGCTAGATGTTAACTTTAAAAGAAGGGAACATCAAAAGTCGAAGTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20192061 485 -  24206276 ttttttttttgagatggagtctcactctgttgcccaggctggagtgcagtggcat------gatctcggctcactgcaacctccacctcccgggtt-caagtgattctcctgcctcagcctcccaagtagctgggattaaaggcatccgccaccctgctggggtagtttctgtatttttagtagagatggggtttcaccatgatggccaggctggtcttgatctcctgacctcaactgatctgcccgcctcggcctcccaaagtgctgggattacaggcatcagccactgcgccaggcTATGAAACAAACTTTCTTCCACCCACAGCTTTCTCCTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAGACAGAGAGAGAGGGAAGCTACTTCCAAATGGACGCCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGCTAGATGTTAACTTTAAAAGAAGGGAACATCAAAAGTCCAAGTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18223162 485 + 132174527 TTCCttttttgaaatagagtcacactctgtcacataggctggagtgcagtggcgt------gatctcggctcactgcaaccttcacctcccaagttggaagcgattttcctgcctcagcctccccagtagccaggattaca-ccgtctgccacaacgcctggctaatttttgtattttcagtagagacagggtttcgccatgttgcccaggcgggtcttgaattcctgacctcaagtgatccgctgacctcggcctcccaaaatgctgcaattacaggcgtgagccactgagccaggccATGAAACAAACTTTCTTCCACCAACAGCTTTCTCCTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAGAGAGAGTGAGAGAGGGAAGCTACTTCCAAATGGACGCCTGTCCCCCTCAGTAATAACCAAGTCTATTCAAGTGCTAGATGTTAACGTTAAATGAAGGGAACATCAAAAGTCCAAGTT
i calJac3.chr10             I 97540 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=2865.000000
s hg38.chr15_KI270850v1_alt   299101 2 +    430880 TC
s panTro4.chr15             80081665 2 +  99548318 TC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81565660 2 +  99152023 TC
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              65409215 2 + 171882078 TC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59708252 2 + 162156779 Tc
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             18223647 2 + 132174527 TC
i calJac3.chr10             C 0 I 31
e canFam3.chr30              1743556 0 -  40214260 I
e chlSab2.chr29             20192546 0 -  24206276 C
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=63057.000000
s hg38.chr15_KI270850v1_alt   299103 76 +    430880 Agccgggtgcagtggctcatgcctgtaatcccagcactttaggaggctgaggcgggtggatcacaaggtcaggagt
s panTro4.chr15             80081667 76 +  99548318 ggccgggtgcagtggctcatgcctgtaatcccagcactttaggaggctgaggcgggtggatcacgaggtcaggagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81565662 76 +  99152023 Ggccgggtgcagtggctcacgcctgaaatcccagcactttaggaggctgaggcgggtggatcacgaggtcaggagt
i ponAbe2.chr15             C 0 M 784
s macFas5.chr7              65409217 76 + 171882078 AGAcaggcgcggtggctcatgcctgtaatcccagcactttcggaggccaaggcggggggatcacgaggtcaggagt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59708254 76 + 162156779 agacaggcgcggtggctcatgcctgtaatcccagcactttcggaggccaaggcgggaggatcacgaggtcaggagt
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             18223649 31 + 132174527 I
e canFam3.chr30              1743556  0 -  40214260 I
e chlSab2.chr29             20192546  0 -  24206276 C
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=93527.000000
s hg38.chr15_KI270850v1_alt   299179 190 +    430880 tcaagaccagcctggtcaatatggtgaaaccccgtctctactaaaaata-aaaaattagtcaggcatggtggcgtgtgcctgtagtcccagctactcgggagaggcagaagattcgcttcaaccggggaagcagaggttgcagtgagccaagatcgtgctactgcactccagcctgggtgacagagcgaga
s panTro4.chr15             80081743 191 +  99548318 tcaagaccagcctggtcaatatggtgaaaccccgtctctactaaaaatacaaaaagtagtcaggcatggtggcgtgtgcctgtagtcccagctactcgggagaggcagaagattcgcttcaaccggggaagcagaggttgcagtgagccaagatcgtgctactgcactccagcctgggtgacacagcgaga
i panTro4.chr15             C 0 C 0
s macFas5.chr7              65409293 191 + 171882078 tcaagaccatcctggccaatatggtgaaaccccagctctactaaaaatacaaaagttagcaagacatggtggtgcgtgcctatagtcccagctactcggcagaggcagaagattcgcttgaacccgggaggcagaggttgcagtgaaccaagatcgcaccactgcactccagcctgggtgacagagtgaga
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59708330 191 + 162156779 tcgagaccatcctggccaatatggtgaaaccccagctctactaaaaatacaaaagttagcaagacatggtggtgcgtgcctatagtcccagctactcggcagagGCAgaagattcgcttgaacccgggaggcagaggttgcagtgaaccaagatcgcaccactgcactccagcctgggtgacagtgtgaga
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             18223649  31 + 132174527 I
e canFam3.chr30              1743556   0 -  40214260 I
e chlSab2.chr29             20192546   0 -  24206276 C
e nomLeu3.chr6              19259148 7475 - 121039945 I
e ponAbe2.chr15             81565738 784 +  99152023 M

a score=14967.000000
s hg38.chr15_KI270850v1_alt   299369 32 +    430880 ctccgtctcaaaaa---------aaaaaaaaaGTCCAAGTG
s panTro4.chr15             80081934 32 +  99548318 ctccgtctcaaaaa---------aaaaaaaaaGTCCAAGTG
i panTro4.chr15             C 0 C 0
s macFas5.chr7              65409484 41 + 171882078 ttccttctcaaaaaaaaaaaaacaaaaacaaaTTCCAAGTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59708521 36 + 162156779 ttccttctcaaaaaaaaa-----aaaaaaaaattccaagtc
i papAnu2.chr7              C 0 C 0
s calJac3.chr10             18223680 38 + 132174527 CTCAATCTCAAAAGTGTGGA---ACATCAAAAGTCCAAGTT
i calJac3.chr10             I 31 C 0
e canFam3.chr30              1743556  0 -  40214260 I
e chlSab2.chr29             20192546  0 -  24206276 C
e nomLeu3.chr6              19259148 7475 - 121039945 I
e ponAbe2.chr15             81565738 784 +  99152023 M

a score=182503.000000
s hg38.chr15_KI270850v1_alt   299401 165 +    430880 TCTTCGCCTAGCTTTGTCAGGAATGTTTTTACCCTCAGTCTG--TAAGTGTGACCAAATATATTTTTTAAAGGTTTACCCTCAATCTGTTAA----------------------------------------------------GTTCAAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATACACAG-AAATGTCCTTA
s panTro4.chr15             80081966 165 +  99548318 TCTTCGCCTAGCTTTGTCAGGAATGTTTTTACCCTCAATCTG--TAAGTGTGACCAAACATATTTTTTAAAGGTTTACCCTCAATCTGTTAA----------------------------------------------------GTTCAAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATACACAG-AAATGTCCTTA
i panTro4.chr15             C 0 C 0
s macFas5.chr7              65409525 184 + 171882078 TCTTTGCCTAGCTTTGTCAGGAATGTTTTTACCCTAACTCTGTATAAGTGTCACCAAATATAATTTTTAAAGGTTTAACCTCAATCTATAAGTT------------------------------------TGATCAAACATAATGTTTAAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATATACAGAAAATGTCCTTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59708557 182 + 162156779 tCTTTGCCTAGCTTTGTCAGGAATGTTTTTACCCTAACTCTG--TAAGTGTcaccaaatataatttttaaaggtttaacCGCAATCTATAAGTT------------------------------------TGATCCAACATAATGTTTAAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGgaataaaatacacagaaaatgtCCTTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20192546 181 -  24206276 TCTTCGCCTAGCTTTGTCAGGAATGTTTTTACCCTCAATCTG--TAAGTGTGATCAAATATAATTTTTAAAGGTTTACCCTCAATCTGTAAGTT------------------------------------TGACCAAATATAATTTTTAAAGGTTTACTACAATCTCTTCATCAGAAAACTAATGGAAAAATGGAATAAAATCTATAG-AAATGTCCTTA
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18223718 217 + 132174527 TCTTCGCCTAGCTTTGTCAGGAATGTCTTTACCCTTAATCTC--AAAGTGTGATCAAATATAATATTTAAAGGTTTACCCTCAATCTGTAAGTTTGTTCAAATTTTTAATGTTTTTACCCTCAATCTGTGTGATCAAATATAATTTTTAAAGGTTCACTATAATCTCTTCATACAAAAACTAATGAACAGATGAAATAAAATATATAG-AAATGTCCTTA
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I
e ponAbe2.chr15             81565738 784 +  99152023 M

a score=124929.000000
s hg38.chr15_KI270850v1_alt   299566 248 +    430880 ACAGGTAAATATTTATTtttc-tttcttattattatactttaagttctggggtatatgtgcagaacgtgcaggtttgttgcataggtacacacgtgccatggtggtttgctgcacccatcaactcgtcatctacactaggtatttctcctaatgctatccctcccctagccccccaacccccaacaggccccagtgtgtgatgttcccccctccctgtgtccgtgtgttctcactgttcaactcccact
s panTro4.chr15             80082131 248 +  99548318 ACAGGTAAATATTTATTtttc-tttcttattattatactttaagttctggggtatatgtgcagaacgtgcaggtttgttgcataggtacacacgtgccatggtggtttgctgcacccatcaactcgtcatctacactaggtatgtctcctaatgctatccctcccctagccccccaacccccaacaggccccagtgtgtcatgttcccccctccctgtgtccgtgtgttctcactgttcaactcccact
i panTro4.chr15             C 0 C 0
s macFas5.chr7              65409709 245 + 171882078 ACAGGTAAATATTTATTTttctttttttattattatactttaagttctggcgtacatgtgcagaacgtgcaggtttgttgcataggtacacacgtgccacagtggtttgctgcacccatcaacttgtcatctacactaggtatttctcctaatgctatcccgcccctagccccacaccccgcaacaggccccagtgtgtgatgttcccctc----tgtgtccatgtgttctcactgttcaactcccact
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59708739 247 + 162156779 AcaggtaaatatttatttttctttttttattattatactttaagttctggcgtacatgtgcagaacgtgcaggtttgttgcataggtacacacgtgccacagtggcttgctgcacccatcaacttgtcatctacactaggtatttctcctaatgctatcccgcCCCTAGCCCCACACcccgcaacaggccccagtgtgtgatgttcccctct--gtgtgtccatgtgttctcattgctcaactcccact
i papAnu2.chr7              C 0 C 0
e calJac3.chr10             18223935   0 + 132174527 C
e canFam3.chr30              1743556   0 -  40214260 I
e chlSab2.chr29             20192727   0 -  24206276 C
e nomLeu3.chr6              19259148 7475 - 121039945 I
e ponAbe2.chr15             81565738 784 +  99152023 M

a score=218027.000000
s hg38.chr15_KI270850v1_alt   299814 179 +    430880 ACAGGTAAATATTTCTAGAATGTATCTACTCCATCAGCTAGTGTAAGTATTCTAAACTGTGCTAGTATAGCTGCTTTAAATCACTGCTTTCTTCTGCAAATGGTGGCACCTTTAAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTC--TACTGAACTAACACTGTTAACA
s panTro4.chr15             80082379 179 +  99548318 ACAGGTAAATATTTCTAGAATGTATCTACTCCATCAGGTAGTGTAAGTATTCTAAACTGTGCTAGTACAGCTGCTTTAAATCACTGCTTTCTTCTGCAAATGGTGGCACCTTGAAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTC--TACTGAACTAACACTGTTAACA
i panTro4.chr15             C 0 C 0
s macFas5.chr7              65409954 181 + 171882078 ACAGGTAAATATTTCTAGAATGTATCTACTCCATAGGGTACTGTAAGTATTCTAAACTGTGCTGGTATAGCTGCTTTAAATCACTGTTTTCTTCTGTAAATGGTGGCAGGTTTAAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTCTGTACTGAACCAACACTGTTAACA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59708986 181 + 162156779 aCAGGTAAATATTTCTAGAATGTATCTACTCCATCGGGTACTGTAAGTATTCTAAACTGTGCTGGTATAGCCGCTTTAAATCACTGCTTTCTTCTGTAAATGGTGGCACCTTTAAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTCTGTACTGAACCAACACTGTTAACA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20192727 181 -  24206276 ACAGGTAAATATTTCTAGAATGTATCTATTCCATCTGGTACTATAAGTATTCTAAGCTTTGCTAATATAACTGATTTAAATCACAGCTTTCTTCTGTAAATGGTGGTACCTTTAAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTCTGTACTGAACTAACACTGTTAACA
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18223935 181 + 132174527 ACAGATAAGTATTTCTAGAATGTATCTACTCCATCTCGTACTGTAAGTATTCTAAACTGTACTAGTATAACTGATTTAAATCGCTGCTTTTTTCTGTAAACGGTGGCACCTTTAAAGTGTTATCTTGAAAGGGAAAGAAGTGACTCGCTCATGTCTATGTACTGAACTAACACTGTTAACA
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I
e ponAbe2.chr15             81565738 784 +  99152023 M

a score=902871.000000
s hg38.chr15_KI270850v1_alt   299993 560 +    430880 CCCAGTCCAGTTCTACCTTAAACAAGTCGGAGAAATACAGACATAATCCATACTTGTTATTTGTCAAGACTAAGGT------AAAATAAGGAAAGTTGGAACTCACTCATATCCTCTTATGACTGATGTACTGAAAACAATCCATCTCTCACCATTTCCTAAATAGCATAGTCACAAAGAGCTCTACCCTACCAAG-TACTCTGCAAGTCCCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTTGCTATTGTTTCCATTATCCTTCAGTTCATCTGACACCTTTGAAGAAATGCATTTGGATAAGACTCACAAGTCTCAGGGCCCCTTCTTT-ATGAAAGAAATAGCTAAGCCTCCATACTCAGAAGCATCAGACTTTTCAGAATGCTTAAGTCATGTAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctactccatgttagatactgcagttaagtatctcacacagtttcactgatt-cctaacaacactgcaaagcatgttactaacccttaaggagtaggaagctgaagctctgaga
s panTro4.chr15             80082558 561 +  99548318 CCCAGTCCAGTTCTACCTTAAACAAGTCTCAGAAATACAGACATAATCCATACTTGTTATTTGTCAAGACTAAGGT------AAAATAAGGAAAGTTGGAACTAACTCATATCCTCTTATGACTGATGTACTGAAAACAATCCATCTCTCACCATTTCCTAAATAGCATAGTCACAAAGAGCTCTACCCTACCAAG-TACTCTGCAAGTCCCACTCGCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTTGCTATTGTTTCCATTATCCTTCAGTTCATCTGACACCTGTGAAGAAATGCATTTGGATAAGACTCACAAGTCTCAGGGCCCCTTCTTTAATGAAAGAAATAGCTAAGCCTCCATACTCAGAAGCATCAGACTTTTCAGAATGCTTAAGTCACATAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctactccatgttagatactgcagttaagtatctcacacagtttcactgattccctaacaacactgc-aagcatgttactaaccccttaggagtaggaagctgaagctctgaga
i panTro4.chr15             C 0 M 866
s ponAbe2.chr15             81566522 561 +  99152023 CCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGACATAATCCATACTTGTTATTTGTCAAGACTAAGGT------AAAATAAGGAAAGTTGGAACTAACTCATATCCTCTTATGACTGATGTACTGAAAACAATCCATCTCTCACCATTTCCTAAATAGCATAGTCACAAAGAGCTCTACCCTACCAAGCCACTCTGCAAGTCCAGCTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTTGCTATTGTTTCCATTATCCTTCAGTTCATCTGACACCTTTGAAGAAATGCATTTGGGTAAGACTCACAAGTCTCAGGGCCCCTTCTTT-ATGAAAGAAATAGCTAAGCCTCCATACTCAGAAGCATCAGACTTCTAAGAATACTTAAGTCATGTAAAAACTTATCAAAATTATTATCATtacagctaccaggaaatagctacctacttcatgttagatactgcagttagatatctcacacagtttcactgatt-cctaacaacactgcaaagtatgttactaacccttatggagtaggaagctgaagctctgaga
i ponAbe2.chr15             M 784 C 0
s macFas5.chr7              65410135 553 + 171882078 CCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGACATAATCCACACTTGTTATTTGTCAAGACTAAGGT------AAAATAAAGAAAGTTGGAAGTACCTCATAGCCTCTTAGGACTGATGTACCGAAAACAATCCATCTCTCACCATTTCCTAAATACCATAGTCACAAAGAGCTCTACCCCACCAAG-CACTCTGCGAGTCTCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTCGCTATTGTTTCCATTATCCTTCAGTTTACATG--ACCT---AAGAAATGCATTCCTATAAGACTCACAAGTCTCAGGGCCCCTTCTTT-ATGAAAGAAATAGCTAAGCCTCTATACTCAGAAGCATCAGACTTTTAAGAAACCTTAAGTCATGTAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctacttcatgttaaatactgaagttaagtacctcac--agtttcattcatc-cctaaaaactctgcaaagcatgttactaacctttatggagtaggaaactgaagctctgaga
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59709167 553 + 162156779 CCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGACATAATCCACACTTGTTATTTGTCAAGACTAAGGT------AAAATAAAGAAAGTTGGAACTACCTCATAGCCTCTTAGGACTGATGTACTGAAAACAATCCATCTCTCACCATTTCCTAAATACCATAGTCACAAAGAGCTCTACCCCACCAAG-CACTCTGCGAGTCTCAGTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTCGCTATTGTTTCCATTATCCTTCAGTTTACATG--ACCT---AAGAAATGCATTCCTATAAGACTCAGGAGTCTCAGGGCCCTTTCTTT-ATGAAAGAATTAGCTAAGCCTGTATACTCAGAAGCATCAGACTTTTAAGAAAGCTTAAGTCACGTAAAAACGTATCAAAATTATTATCATTACAGCTACCAGGAAATAGCTACCTACTTCATGTTAAATACTGAAGTTTGGTACCTCAC--AGTTTCATTCATC-CCGAAAAACTCTGCAAAGCATGTTACTAACCATTATGGAGtaggaaactgaagctctgagA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20192908 551 -  24206276 CCCAGTCCAGTTCCACCTTAAACAAGTCTGACAAATACAGACATATTCCACACTTATTATTTGTCAAGACTAGGGT------AAAATAAAGAAAATTGGAA----CACATATCCTCTTATGACTGATGAACTGAAAACAATCCATCTCGCACTGTTTCCTAAATAACACAGTCACAAAGAGCTCTACCCCACCAAG-CACTCTGCAAGTCCCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAACTCGCTATTGTTTCCATTATCCTTCAGTTCATCTGGCACCTTTGAAGAAACAGATTTAGATAAGACTCACAAGTCTCAAGGCCCCTTCTTT-ATGAAAGAATTAGCTAAGCCTCTATACTCAGAAGCATCAGACTTTTAAGAATGCTTAA-----GTAAAAATGTATCAAAATTATTCTCATGACagctaccaggaaatagctacttattccacgttagatactgcagttaagtacctcacatagtttcactgatt-tctaagaacactgcaaagcatgttactaacccttacagagtaggaaactgaagctctgaga
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18224116 561 + 132174527 TCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAAT--AGACATAATCCATACTTATTACTTTTCAAGACTAAGGTTAAAAAAAAGGAAAAAAAGTTGGAACTAACTCATATCCTCTTATGACTGATATACTGAAAACAATCCATCTCTCACCGTTTTCTAAATACCACAGCCACAAAGAGCTCTACCCTACCAAGCCACTCTGCAAGTCCCACTCTCAAAGGAAGACTAACAGGTGACTGAGAAGATAAACTCACTACTGTTTCCATTATCCTTCAGTTCATCTGGCACCTTT-GAGAAATGCATTTGGATAAGACTCACCAGTCTCAGGGCCCCTTATTT-ATGGACGAAATCGCTAAACCTCTATACTTAGAAGCATCAGACT--TAAGAATGCTTAAGTCATGTAAAAACGTATCACAATTATTATCATTACAGCTACGAGGAAATAGCTAcctacttcgtgttaggtactgtag-taaatacctcacacagcttcatttatt-cctgagaacactgcaaagcatgtcactaacccttagggggtaggaaactgacgctctgaca
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=606148.000000
s hg38.chr15_KI270850v1_alt   300553 553 +    430880 ggctatgcaactactcaatggaaatgtggggatgtgaactctacctagctccaaagggcgtacttttttcTAAAATTTCTAA---TTTTTTTCCAATTTCACAATGGAGGCAGAGTTTTCACT-----------ACAATTTTAATAATTTCACCAgctgggtggggtggctcacgcctgtaattccagtactgtgggaggctgaggtgggaagacggcttgggtcccgg----ggagacaactgggcaacagtgaagattctgactct-aaaaaaaataagaaTTTCACCAAAA--GGGGGGA-------CAGATTTCTAAATCGGAATCTCTTGTTAAAATCCTTAGAGCACTAGTTAAGCCCCACTTCTTT--TCAAAAAATAACCGACAGA--------TT---AAAAAAAAGGTTAGAAATCCTTTTAAAGTAAATTTCATCAGAGATCTGCAAGTGAATTGTCATTTTGGACAAGTCCCCAGAGTTGGTGGCCCTCTCCTGTGTACACCAGCTACCACTAGGCAGTAAAAGTAatttacccaattcaaacacataccgtgcctgcactatgttaagac----cactggcaaag
s ponAbe2.chr15             81567083 554 +  99152023 agctatgcaactactcaatggaaatgtggggatctgaactctacctagctccaaagggtatacttttttcTAAAATTTCTAA---TTTTTTTCCAATTTCAAAATGGGGGGAGAGTTTTC--------------ACAATTTTAATAATTTCACCAgctgggtagggtggctcacgcctgtaattccaacactgtgggaggctgaggtggaaagatggcttgggtcccag----ggagacaactgggcaacagtgaagattccgactct--aaaaaaaTAATAATTTCACCAAAAGGGGGGGGA-------CGGATTTCCAAATCGGAATCTCTTGTTAAAATCCTTAGAGTACTAGTTAAGCCCCACTTCTTT--TCAAAAAATAACCGACAGA--------TTAAAAAAAAAAAGGTTAGAAATCCTTTTAAAGTAAATTTCATCACAGATCTGCAAGTGAACCGTCATTTTGGACAAGCCCCCACAGTTGGTGGCTCTCTCCTGTGTACACTAGCTACCACTAGGCAGTAAAAATAatttacccaattcaaacacatactgtgcctgcactatgttaagac----cactggcaaag
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              65410688 554 + 171882078 gactgtgcaactagtcaatggaaatgtggggatctgaactctacctagctccaaagggtgtacgtttttctaAAATGTCTAA---TTTTTTTCCAATTTCACAATGGAGGGAGAGTTGTCACT-----------ACAATTTTAATAATTTCACCAgctgggtgggatggctcaggcctgtaattccaacactgtgggaggctgaggtgggaggacgggttgggttcccg----gcagacaactgggaaacagtg-agattccgactct--aaaaaaaTAATAGTTTCACCAAAA-GGGGGGGA-------CGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTTGAGCACCAGTTAAGCCCCACTTCTTTAAATAAGTAATAACCGACAGATTTTTTTTTT---TAA------GTTAGAAATCCTTTTAAAGTAAATTTCATCACAGATCTGCAAGTGAACTGTCATTTTGGACAAGTCTCCAGAGTTAGTGGCTCTTTCCTGTGCACACTAGCTACCACTAGGCAGTAAAAATAATTTACCCAATTCAAACACATACCGTGCCTGCAC--TGTTAAGAC----TACTGGCAAAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59709720 553 + 162156779 GACTATGCAAGTAGTCAATGGAAATGTGGGGATCTGAACTCTACCTAGCTTCAAAGGGTGTACGTTTTACtaaaatgtctaa---tttttttccaatttcacaATGGAGGGAGAGTTGTCAct-----------acaattttaataatttcaccAGCTGGGTgggatggctcaggcctgtaattccaacactgtgggaggctgaggtgggaggacgggTTGGGTTCCCG----GCAGACAACTGGGAAACAGTG-AGATTCcgactct--aaaaaaataatagtttcacCAAAA-gggggggA-------CGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTAGAGCACCAGTTAAGCCCcacttctttaaataaataataaccgataga-ttttttttt---taa------gttaaaaatccttttaaagtAAATTTCATCACAGATCTGCAAGTGAACTGTCATTTTGGACAAGTCTCCAGAGTTAGTGGCTCTCTCCTGTGTACGCTAGCTACCACTAGgcagtaaaaataatttacccAATTCAAACACATACCGTGCCTGCAC--TGTTAAGAC----TACTGGCAAAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29             20193459 555 -  24206276 ggctatgcaactagtcaatggaaatgtggggatgtgaactctacctagctccaaagggtgtacgttttTTTTAAATTTCTAA---TTTTTTTCCAATTTCACAAT----GGAGAGTTGTCACT-----------ACAATTTTAATAACTTCACCAgttgggtggggtggctcacatccgtaattcaaacactgtgggagactgaggtgggaggatggcttgggtccccg----ggagacaactgggaaacagtg-agattccgactct--aaaaaaaTAATAATTTCACCAAAA-CGGGGGGAGGGGGGGCAGATTTCTAAATCAGAATCTCTTGTTGAAATCCTTAGGGCACTAGTTAAGCCCCACTTCTTT--TCAAAAAATAACTGACAGA--------TT---TAAAAAAAGGTTAGAAATTCTTTTAAAGTAAATTTCATCACAGATCTGCAAGTGAATTGTCATTTTGGACAAGTGCCCAGAGTTAGTGGCTCTCTCCTGTGCACACTAGCTACCACTAGGCAGTAAAAATAatttacccaattcaaacacatactgtgcctgcgctatgttaagac----tactggcacac
i chlSab2.chr29             C 0 n 0
s calJac3.chr10             18224677 573 + 132174527 ggctatgcaactggtcaatggaaatgtgcggatctgaactttacctagctccaaagcatgtacttttttcTAAAACTTCTCATTTTTTTTTTCCAATTTCCCAATGGAGGGAGAGTTGTGACTAGATTTGTCCAACAATTTTAATAATTTCACCAgctgggtggggtggatcacgcctgtaattccaacactgtgggaggctgaggtgggaggatggcttgggtccaggagttagagaaagctgggaaacagtg-atactctggctctaaaaaaaaaaaaTAATTTCACCCAAGGGGTGGGGT-------GGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTAGAGCACTAGTTAAGCCCCACTTCTTT--TCAAAAAATAAC----AGA--------TT---TTTTAAAAGGCTAAAAATCCTTTTAAAATACATTTCATTACAGAGCCCCAAGTTAACTGTCATTCTGAACAAGTCCCCAGAGTTAGTGGCTCCCTCCTGTGTACGCTAGCTACCACTAGGCAGTAAAAATAATTTACCCAATTCAAATACATACTCTGCCTGCACTATGTTAAAACTCTTTACTGACAAAG
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I
e panTro4.chr15             80083119 866 +  99548318 M

a score=302794.000000
s hg38.chr15_KI270850v1_alt   301106 248 +    430880 agggtacaaagttaaataaggtctatcacagccctcaaggagttaaaggacta---gaggagTCCATTTATAGTATAGTATGTGTGCAGTTACCATTTAGTCAAGGCAAACGAACTGTGAGAAATCCTACAACAATAGTACCTACAGTATAACATGCCATCACCGCCCACAGAAGGAAAGCAACTGGTGCCCTCGTCACGTTATGTTGT---TAGTACTTGCTTACATGATG--TCCCTCCCTGACAATCCCTTCC
s ponAbe2.chr15             81567637 254 +  99152023 agggtacaaagctaaataaggtctatcacagccctcaaggagttaaaggattagaggaggagTCCATTTATAGTATAGTATGTGTGCAGTTATCGTTTAGTCAAGGCAAATGAACTGTGAGAAATCCTAAAACAATAGTTCCTACAGTATAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGCTGTAAGTAGTACTTGCTTACATTATG--TCCCTCCCTGACAATCCCTTCC
i ponAbe2.chr15             C 0 I 11
s macFas5.chr7              65411242 253 + 171882078 AGGGTACAAAGCTAAGTAAGGTCTATCACAGCACTCAAGGAGTT-AAGGACTAGAGGAGGAGTCCATTTATAGTACAGTATGTGTGCAGTTACCATTTAGTCAAGGCAAACGAAGTGTAAGAAATCCTAAAACAATAGTACCTACAGGATAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGTTGTCAGCAGTACTTGCTTACATTGTG--TCCCTCCCTGACAATCCCTTCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59710273 253 + 162156779 AGGGTACAAAGCTAAGTAAGGTCTATCACAGCACTCAAGGAGTT-AAGAACTAGAGGAGGAGTCCATTTATAGTACAGTATGTGTGCAGTTACCATTTAGTCAAGGCAAACGAAGTGTGAGAAATCCTAAAACAATAGTACCTACAGGGTAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGTTGTAAACAGTACTTGCTTACATTGTG--TCCCTCCCTGACAATCCCTTCC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3891943 253 +  24206276 AGGGTACAAAGCTAAGTAAGGTCTATCACAGCACTCAAGGAGTT-AAGGACTAGAGGAGGAGTCCATTTACAGTACAGTATGTGTGCAGTTACCATTTAGTCAAGGCAAACGAAGTGTGAGAAATCCTAAAACAATAGTACCTACAGGATAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGTTGTCAGCAGTACTGGCTTACATTGTG--TCCCTCCCTGGCAATCCCTTCC
i chlSab2.chr29             I 10 C 0
s calJac3.chr10             18225250 247 + 132174527 AGGGTACAAAGCTAAATAAGGTCTATCACAGACCTCAAGGAGTTAAAGGACTA---GAGGAGTCCATTT------CAGTATGTGTGCAGTTACCATTTAGTCAAGGCAGATGAAGTGTGAGAAATCCTAAAACAATTGTATCTACAGTGTAACACGCCATCACAGCCCAGGGAAGGAAAGCAACTGGTGTACTTGTGACGTTATGCTGTAAGTAGTACTTGTTTACATTATGTCTCCCTCCCTGACAATCCCTTCT
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I
e panTro4.chr15             80083119 866 +  99548318 M

a score=17861.000000
s hg38.chr15_KI270850v1_alt   301354 28 +    430880 AACCTCTGT----CAGCCTCCTTCCCcacaat
s macFas5.chr7              65411495 30 + 171882078 AAC--CTGTCAACCAACCTCCTTCCCCACAAT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59710526 30 + 162156779 AAC--CTGTCAACCAACCTCCTTCCCcgcaat
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3892196 32 +  24206276 AACCTCTGTCAACCAACCTCCTTCCCCACAAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18225497 28 + 132174527 AACCTCTGT----CAACCTCCTCCTCCACAAT
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556  0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I
e ponAbe2.chr15             81567891 11 +  99152023 I
e panTro4.chr15             80083119 866 +  99548318 M

a score=127534.000000
s hg38.chr15_KI270850v1_alt   301382 121 +    430880 cacacacacacacaaaaccacacTGCCAGGAAGGGAAGCCATTGAGTGAGTATTGTGAATCCTACAAGTGGCTCTGTAGTTTAAAAGGGCAATGCCTGTGCCTGAAGAAAATTTGTCTTTA
s ponAbe2.chr15             81567902 118 +  99152023 cacacacacacacacaaccacacaACCAGGAAGGGAAGCCATGGAGCCAGGATTGTGAATCCTAAAAGTGGCTCTGTAGTTTAAAAGGGCAATGCCTGTGCCTGAAG---ATTTGTCTTTA
i ponAbe2.chr15             I 11 C 0
s macFas5.chr7              65411525 115 + 171882078 ------CACACACACAACCACACAACCAGGAAGGGAAGCCATCGAGCGAGTATTGTGAATCCTAAAACTGGCTCTGTAGTTTAAAAGTGCAACGCCTGTGCCTGAAGAAAATTTGTCTTTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59710556 117 + 162156779 ----cacacacacacaaccacacaacCAGGAAGGGAAGCCATCGAGCGAGTATTGTGAATCCTAAAACTGGCTCTACAGTTTTAAAGTGCAACGCCTGTGCCTGAAGAAAATTTGTCTTTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3892228 115 +  24206276 ------CACACACACAACCACACAACCAGGAAGGGAAGCCATCGAGCGAGTATTGTGAATCCTAAAACTGGCTCTATAGTTCTAAAGTGCAACGCCTGTGCCTGAAGAAAATTTGTCTTTA
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18225525 118 + 132174527 --CACACACACACACAACCACAAAACCAGGAAGGAAGGCCATCGAGCGAATATTCTGAATTCTAAAAGTGACGTTA-GTTTTAAAAGTGCAATGTCTGTAGCTGAAGAAAATTTGTCTTTA
i calJac3.chr10             C 0 C 0
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I
e panTro4.chr15             80083119 866 +  99548318 M

a score=296056.000000
s hg38.chr15_KI270850v1_alt   301503 189 +    430880 GCTTCATCAGGTGAAGAAAATTGGTTTTATAACACAAGGCCCACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACAGGACTCACTTAGCACGAGAAATCACTCAGAGCAAAATGACGCACACAG-TATTTGTCAAATTTTTCTTTTTCA-TTTAGCAGAAGG-TAAGGTAAAGGACTACAACTGAAGTTAA
s panTro4.chr15             80083995 189 +  99548318 GCTTCATCAGGTGAGGAAAATTGGTTTTATAACACAGGGCCCACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACAGGACTCACTTAGCACGAGAAATCACTCAGAGCAAACTGACGCACACAG-TATTTGTCAAATTTTTCTTTTTCA-TTTAGCAGAAGG-TAAGGTAAAGGAATACAACTGAAGTTAA
i panTro4.chr15             M 866 C 0
s ponAbe2.chr15             81568020 190 +  99152023 GCTTCATCAGGTGAAGAAAATTGG-TTTATAACACAAGGCCCACCAAACCAGAAAAGCCCAGGAGCGCTTCTCCACATGACTCACTTAGCATGAGAAATCACTCAGAGCAAACTGACACACACAG-TGTTTGTCAAATTTCTATTTTTCATTTTAGCAGAAGGTTAGGGTAAAGGAATACAACTGAAGTTAA
i ponAbe2.chr15             C 0 I 1078
s macFas5.chr7              65411640 185 + 171882078 GCTTCATCAGGTGAAGAAAATCGGTTTTATAACACAAGGCCCACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCATGAGAAATCACCCACAGCAAACTGACATACACAGTTATTTCTCAAATTTTTCTTTTTCA-TTTAGCAGATGG------TAAAGGAACACAACTGAAGTTAA
i macFas5.chr7              C 0 I 3
s papAnu2.chr7              59710673 185 + 162156779 GCTTCATCAGGTGAAGAAAATTGGTTTTATAACACAAGGCCCACCAAACCAGAAAAGCCCAGGAACACTTCTCCACATGACTCACTTAGCATGAGAAATCACTCACAACAAACTGACATACACagttatttctcaaatttttctttttca-tttagcaGATGG------TAAAGGAATACAACTGAAGTTAA
i papAnu2.chr7              C 0 I 3
s chlSab2.chr29              3892343 185 +  24206276 GCTTCATCAGGTGAAGAAAATTGGTTTTATAACACAAGGCCCACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCATGAGAAATCACTCACAGCAAACTGACATACACAGTTATTTCTCAAATTTTTCTTTTTCA-TTTAGCAGATGG------TAAAGGAACACAACTGAAGTTAA
i chlSab2.chr29             C 0 I 3
s calJac3.chr10             18225643 172 + 132174527 GTTTCATCAGGCGAAGAAAGTTAGTTTTATAACACAAGGCCC-----ACCAGAGAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCATGGGAAATCACTCAAAGCAAACTGACACACACAG-TATTTCTCTAATTTTTCTTTTTTC-ATTTGCAAGTGG------TAAAGGAAC-------AAGTTAA
i calJac3.chr10             C 0 I 3
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=1602719.000000
s hg38.chr15_KI270850v1_alt   301692 1509 +    430880 TAAATGACACTCTAGCCATTTTGATCATTTGTCACTATAAATGATAGACATTTAAGCTAGTTCCATCTGGGGAAGTGAAACAGAATCATGTTCATATAATAAGCCAGACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACAGAATACAAGAACAGTAACACTGGTTTATCTCAACTCATCTTAGCTCCCTCACAAACTTGCCAATAATGACCTTTCAAGAACTGCACCGTTGGTCCTCATCTGGGCAATCCCGTGGCTTAGAAAAACTGAATAAAGTGCTTCTTCGAAAAATAAAACAA-TGCGGG---------GAGGGGGGAGTAGT----AAC-------AAAAAAAAAGGCACACT--GGTTTTTACTGTACTGAAGCAAT-AAATTCTCCAACTAACTTCATTAATGAGTAT--CAGCAAAGAATGAACACCAAAATACCGCTCAATCCAACTTTCATCGTGAATTCTTGAATTCACAGTAGGATC------ATTAAATGTGACGGTATCACTCTGCTATAAAAACTATTTCCAAAACAAAACAAACCTATCTACCCCCTTTCTTGA-TTTaaaaaaaaa----aaaaaaaaaaagaaggaaaaT-------------TTGAGGGTTTTTGATTTTTTCAACTTCACATACCGGTTTGCCTTTGC----------------------------------AAAAAAAAAAAAATTGTTTAG----------TCTCAAAGTATAGCTGCAAGGTGGACC---------------------------GGCTGCACGGGTCCCAGAGGGCCGCTCGCCTCCGACGGTCGCAGTTTCAGCCGGGCCGCGCCCGCGAGAAACAGCGGAGAGGCCCCAGCAGGCGGGCGCCGCCGGACAGGTTTACCGTCCGCGTCGG-CCCCGGGGAACCGCTCCCTCGCGCCCGCAGCACTTGTTCGCGGCGCGGACTCCACACCGCGGCCGCCCGCCCCAGGGGAGGAGTGAGTCCGCCCCAGCGGCGCCAACCCGGGGACCCGGGGCAAGGGTTCGGG-----------------------GCCATCCGCCGCCGGGCGCGCCCCCCATCCGGAAAGCGGCGACGGCCCCCAAGTTGGGCTGCGGAGTGGGAGGCGCGCCGAGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGGGAGGAGGGGTCCGCAAAGCTGAGGTCCCCGCGCCGCCCGGCTACCCATCCGTGCCGCCCGCCCCTGAAGCCCCGCGCAGCCCCCGACCCTCCTCTGGGGCCCGCCCCACCGAGCGGCCGCA-GGGGACGGGCCGCGCTCCGCACCCCGA-CCCCTCCTCAAATCACAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTCTCACCGTGCGGCTCCCGGGGCTCCCCCGCGGGCCGAGCCGAGACAGCTCCTCACCTTCGCCGCGGAGAAAGACAATAGGCTGCCTCTCCCCcggcggcggcagcagcggctgcggctaaagcggcggcAACCGAGGCGAGCAATGGGCACGGCGGTCTCGGCCGAGCCGAGGGGCTTCACCGCTGCTGCTCCGGCTCCGCGACAGCT
s panTro4.chr15             80084184 1520 +  99548318 TAAATGACACTCTAGCCATTTTGATCATTTGTCACTATAAATGATAGACATTTAAGCTAGTTCCATCTGGGGAAGTGAAACAGAATCATGTTCATATAATAAGCCACACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACAGAATACAAGAACAGTAACACTGGTTTATCTCAACTCATCTTAGCTCCCTCACAAACTTGCCAATAATGACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCCGTGGCTTAGAAAAACTGAATAAATTGCTTCTTCGAAAAATAAAACAA-CGCGGG---------GAGGGGGGAGTAGT----AAC-------AAAAAAAAAGGCACACT--GGTTTTTACTGTACTGAAGCAAT-AAACTCTCCAACTAACTTCATTAATGAGTAT--CAGCAAAGAATGAACACCAAAATACCGCTCAATCCAACTTTCATCGTGAATTCTTGAATTCACAGTAGGATC------ATTAAATGTGACGGTATCACTCTGCTATAAAAACTATTTCCAAAACAAAACAAACCTATCTACCCCCTTTCTTGA-TTTAaaaaaaaaaaagaaagaaagaaagaaggaaaAT-------------TTGAGGGTTTTTGCTTTTTTCAACTTCACATACCGGTTTGCCTTTGCaaaaa---------------------------aaaaaaaaaaaaaaaTTGTTTAG----------TCTCAAAGTATAGCTGCAAGGTGGACC---------------------------GGCTGCACGGGTCCCAGAGGGCCGCTCGCCTCCGACGGTCGCAGTTTCAGCCGGGCCGCGCCCGCGAGAAACAGCGGAGAGGCCCCAGCAGGCGGGCGCCGCCGGACAGGTTTACCGTCCGCGTCGG-CCCCGGGGAGCCGCTCCCTCCCGCCCGCAGCACTTGTTCGCGGCGCGGACTCCACACCGCGGCCGCCCGCCCCAGGGGAGGACTGAGTCCGCCCCAGCGGCGCCAACCCGGGGACCCGGGGCAAGGGTTCGGG-----------------------GCCATCCGCGGCCGGGCGCGTCCCCCATCCGGAAAGCGGCGACGGCCCCCAAGTTGGGCTGCGGAGTGGGAGGCGCGCCGAGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGGGAGGAGGGGTCCGCAAAGCTGAGGTCCCCGCGCCGCCCGGCTACCCATCCGTTCCGCCCGCCCCTGAAGCCCCGCGCAGCCCCCGACCCTCCTCTGGGGCCCGCCCCACCGAGCGGCCGCA-GGGGACGGGCCGCGCTCCGCACCCCGA-CCCCTCCTCAAATCACAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTCTCACCGTGCGGCTCCCGGGGCTCCCCCGCGGGCCCAGCCGAGACAGCTCCTCACCTTCGCCGCGGAGAAAGACAATAGGCTGCCTCTCCCCcggcggcggcagcagcggctgcggctaaagcggcggcaaccgaggcgagcgatgggcacggcggTCTCGGCCGAGCCGAGGGGCTTCACCGTTGCTGCTCCGGCTCCGCGACAGCT
i panTro4.chr15             C 0 C 0
s macFas5.chr7              65411828 1500 + 171882078 TAAATGACACTCTGGCTATTTTGTTCATTTGTCACTATGAATGACAGACATTTAAGCTAGTTCCATCTGGGGAACTGAAACAGAATCATGTTCATATCATAAGCCACACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACGGAATACAAGAACAGTAACAATGATTTATCTCAACTGATCTTAGCTTCTTCACAAACTTGCCAATAACCACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCAATGGTTTAGAAAAACTGAAACAACTGCTTCTTCGAAAATTAAAACAA-TGCGGGGGGT----GGGGGGGGAAGTAGTaacaaaca--aacaaacaaaaaaGGCACACT--GGTTTTTACTCTACTGAAGCAAT-CAACTCTCCAAATAACTTCATTAATGAGTGT--CAGCAAAGAATGAACACCAAAATACCGCTCAATCTAACTTCCATCGTGAATTCCTGAGTTCACAGTAGGAGC------ATTAAATGTGACGGTATCACTCTGCTATAAGAACCATTTC-----CAAAACAAACCTATCTACCCCCTTTCTTGAGTTTaaaaaagaa----agagagagagaggagagaaag----aaagTTTGTTTGAGGGTTTTTCC-TTTTTCAATTTCACATACCGGTTTGCCTTTAC----------------------------------AAAAAAAAAAAATAAGATTAG----------TCTCAAAGTATAGCTGCAAGTTGGACC---------------------------GACCGCACAGGTCTCCT-GGGTCATTCGACTCGGAGCGGCGGGGTTTCAGCCGGGCCGCGTCCGGGACAAGCAGCGGAGA--CCCCAGCAGGCGGGCGCCGTCGGACAGATTTACCGTCTGCGTCGGCCCCCGGGGAGCCGCTCCCCCGCTCCCGCAGCACTTGTTCCGGGCGCGGACTCCAAACGGAGGCCGCCGGCCCCAGGGGAGGAGTGAGCCCGCCCCAGCAGCGCCACCCAGAGGACCCGGGGC-AGGGTTCGGG-----------------------GCCATCCGCGGCCGGGCGCGCCCCCCACCCGGAAAGCGGCGACGG-CCCCAAGTTGGGCTGCGGAGTGGGAGGCGCGCCGAGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGAGAGGAGGGGTCTGCAAAGCTGAGGTCcccgcgccgcccggctacccgtccgtcccgcctgcccCGGAAGCCCTGCGCAGCTCC------------GGAGCCCGCCCCACCTAGCAGCCGCA-GGGGACGGGCCGCGCTCCGCACCCCCA-CCCCTCCTCAAATTACAAAACTTGCCCCAACTCCGCCAACTAAGTTGCGCTCTCACAGTGAAGCTCCCGGGGCTCCCCCGCCG-----GCCGAGACAGCTCCTCACCTTCGCCGCACAGAAAAACAATAGGCGGCCGCTCCCCCGGCAGAG------GCGGCGGTGGCTAAAGAGGCGGCGACTGAGGCGAGCAACCGGCATGGCAGTCTCCGCCCAGCCCAGGCGCTTCACCGCTACTGCTCGGGCTACGCGCTGACC
i macFas5.chr7              I 3 C 0
s papAnu2.chr7              59710861 1499 + 162156779 TAAATGACACTCTGgctattttgttcatttgtcaCTATGAATGACAGACATTTAAGCTAGTTCCATCTGGGGAACTGAAACAGAATCATGTTCATATAATAAGCCACACGAACCAAATTCAGTGGAATACGTGCACCCAAAATTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACGGAATACAAGAACAGCAACACTGGTT--TCTCAACTGATCTTAGCTCCTTCACAAACTTGCCAATAATGACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCAATGGtttagaaaaactgaataaacTGCTTCTTCGAAAATTAAAACaa-tgcggggggt-----gggggggaagtagt----aaca--aacaaaaaaaaaaggcacact--gGTTTTTACTCTACTGAAGCAAT-CAACTCTCCAAATAACTTCATTAATGAGTGT--CAGCAAAGAATGAACACCAAAATACCGCTCAATCTAACTTCCATCGTGAATTCCTGAGTTCACAGTAGGAGC------ATTCAATGTGACGGTATCACTCTGCTATAATAACCATTTC-----CAAAACAAACCTATCTACCCCCTTTCTtgagtttaaaaaagaa----agagaaagagaggagagaaagaaataaagtttgttcgaggatttttccttttttcaatttCACATACCGGTttgcctttac---------------------------------aaaaaaaaaaaaataagattag----------tCTCAAAGTATAGCTGCAAGTTGGACC---------------------------GACCGCACAGGTCTCCT-GGGTCATTCGACTCGGAGCGGCGGGGTTTCAGCCGGGCCGCGTCCGGGAGAAGCAGCGGAGA--CCCCAGCAGGCGGGCGCCGTCCGACAGATTTACCGTCTGCGTCGGCCCCCGGGGAGCCGCTCCCCCGCTCCCGCAGCACTTGTTCTGGGCGCGGACTCCAAACGGAGGCCGCCGGCCCCAGGGGAGGAGTGAGCCCGCCCCAGCAGCGCCACCCAAAGGACCCGGGGC-AGGGTTCGGG-----------------------GCCATCCGCGGCCGGGCGCGCCCCCCACCCGGAAAGCGGCGACGG-CCCCAAGTTGGGCTGCGGAGTGGGAGGCGCGCCGAGCCCCAGGCAGACAATACGGGAGAAGGGTGATGCGCAGAGAGGAGGGGTCCGCAAAGCTGAGGTCCCCGCGCCGCCCGGCTACCCATCCGTCCCGCCTGCCCCGGAAGCCCCGCGCAGCTCC------------GGGGCCCGCCCCACCTAGCAGCCGCA-GGGGACGGGCCGCGCTCCGCACCCCCA-CCCCTCCTCAAATCACAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTCTCACAGTGAAGCTCCCGCGGCTCCCCCGCCG-----GCCAAGACAGCTCCTCACCTTCGCCGCACAGAAAAACAATAGGCGGCCGCTCCCCCAGCAGAG------GCGGCGGTGGCTAAACAGGCGGCGACCGAGGCGAGCAACCGGCATGGCAGTCTCCGCCCAGCCCAGGCGCTTCACCGCGGCTGCTCGGGCTACGCGCTGCCC
i papAnu2.chr7              I 3 C 0
s chlSab2.chr29              3892531 1505 +  24206276 TAAATGACACTCTGGCTATTTTGTTCATTTGTCACTGTGAATGACAGACATTTAAGCTAGTTCCATCTGGGGAACTGAAACAGAATCATGTTCATACAATAAGCCACACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGTAAATCCCCAAGAGTCCACGACGGAATACAAGAACAGTAACACTGGCT--TCTCAACTGATCTTAGCTCCTTCACAAACTTGCCAATAATGACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCAATGGTTTAGAAAAACTGAATAAACTGCTTCTTCGAAAATTAAAACAA-TGCGGGGGGG----TGGGGGGGAAGTAGT----AACA--ACAAAAAAAAAGAGGCACACT--GGTTTTTACTCTACTGAAGCAAT-CAACTCTCCAAATAACTTCATTAATGAGTGT--CAGCAAAGAATGAACACCAAAATACCGCTCAATCTAACTTCCATCGTGAATCCCTGAGTTCACAGTAGGAGC------ATTAAATGTGACGGCATCACTCTGCTATAAGAACCATTTC-----CAAAACAAACCTATCTACCCCCTTTCTAGAGTTTAAAAAagaaagagagagagagagaggagagaaag----aaagTTTGTTTGAGGGTTTTTCCTTTTTTCAATTTCACATACCGGTTTGCCTTTAC---aa---------------------------aaaaaaaaaaaaaaaaaGATTAG----------TCTCAAAGTACAGCTGCAAGTTGGACC---------------------------GACCGCACAGGTCTCCT-GGGTCATTCGACTCGGAGCGGCGGGGTTTCAGCCGGGCCGCGTCCGGGAGAAGCAGCGGAGA--CCCCAGCAGGCGGGCGCCGTCGGACAGATTTACCATCTGCGTCGGCCCCCGGGGAGCCGCTCCCCCGCTCCCGCAGCACTTGTTCCGGGCGCGGACTCCAAACGGAGGCCGCCAGCCCCAGGGGAGGAGTGAGCCCGCCCCAGCAGCGCCACCCAGAGGACCCGGGGC-AGGGTTCGGG-----------------------GCCATCCGCGGCCGGGCGCGCCCCCCACCCGGAAAGCGGCGACGGCCCCCAAGTTGGGCTGCGGAGTGGGAGGCGCGCCGAGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGAGAGGAGGGGTCCGCAAAGCTGAGCTCcccgcgccgcccggctacccgtccgtcccgcctgcccCGGAAGCCCCGCGCAGCTCC------------GGGGCCCGCCCCACCTAGCAGCCGCAGGGGGACGGGCCGCGCTCCGCACCGCCACCCCCTCCTCAAATCACAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTGTCACAGTGAAGCTCCCGGGGCTCCCCCGCCG-----GCCGAGACAGCTCCTCACCTTCGCCGCACAGAAAAACAATAGGCGGCCGCT-CCCCAGCAGAG------GCGGCGGTGGCTACAGAGGCGGCGACCGAGGCGAGCAACCGGCATGGCAGTCTCCGCCCAGCCCAGGCGCTTCACCGCTGCTGCTCGGGCTACGCGCTGCCC
i chlSab2.chr29             I 3 C 0
s calJac3.chr10             18225818 1534 + 132174527 TAAATGACACTCTGGACATTTTCTTC------CACTATGAATGACAGACATTTAAGCTAGTTCCATCTGGGAAACTCAAACAGAATTACGTTCATCTCATAAGCCACGAGAACCAAATTCACTGGGATACGAGCACCCAAAACTTGACAAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTACACGATGGAATACAAGAACGGGAACACTGATTTATCTCAACTGATGTCAGCTCCTTCACAAACTTGCTAATAATGACCTTTTAAGAACTGCAACTTTTGTCCTCATCTGGGCAATCCAACGGTTTAGAAAAACTGAATAAACTGCTTCTTCGAAAAATAAAACAGTTGTGGGGGGGGCGGGTGAGGGCGAGTAGC----AACAACAACAACAACAAAAGGCACAGTACAGTTTTTACTGTACTGAAGCAGTAAAACTCTCCAAATAACTTCAATAAGGAGTGTCACAGCAAAGAATGAACACCAAAATAAAGTTCAATCCAACTTTCACTGCGAATTCCTGAGTTCACAGTAGGACCTAGAAAATTAAACCCGACGGTATCACTCGACTGTAAGAAC---TTCCAAAACAAAACAAACCTATCTATCCCCTTTCTTGA-TTTAAAATAAAA------------GGGGGGGGGGACG-------------TTGAGGGTTTTTCC-TTTTTCAACTTCACAAACTGGTTGG-CTTTGCAAAAAAAAAAAAAGGCAGTGAGCCATACTTACAAAAAAAAAAAAAAAGTGTTTTGTTTTGTTTGCTCTCAAGATATAGCTGCAAGTTGAGCCAGCTGCAATGGTCGCAAAGTGCGTGAGGACCGCACAGGTCTCCT-GGGCCGCTCGCCTCAGACCCGCGCGGTTTCAGCCCGGCGGCGCCCCCGAGGAGGCGCAGAACGGCCCCGGCAGGCGGGCGCGGCCCGACGTGTTTACCGCCCGGGTCGG-CCCCGGAGAACCGCTCCCTCGCGCGCGCAGCACTTGTTCGAGGCGCGCACTCCACACCGCGGCCGCCAGCCCCACGGCAGGAgcgggcccgcccccgcggcgccgacccggggacccgggccAGGGGTTCGGGGGCCTCACTGGGGCGACTGAGGAGGCCTCCGCGGCCGAGCGCGTCTCCGACCCGGAAAGCGGTGACTG-ACCCAAGCGGCGCCGCGGGGTGGGAAGCGCGCCGAGCCCGGAACAGACAATGCGGGAGAAGGGTGATGCGAAGGGAGGAGGGGTCCGCAGAGTAGAGGTCCCGGCGCCGCCAGGCAACCCGTCCGTCCCGCCCGCCCCTAAAGCCCGCTGCAGACCC----------------------------------CGCC-----------------------------CCCCTCCTCAAAT--CAAAACTTCCCCCAACTCCGGCAACTAAGTTGCGCTCTCACCGTGCGGCTCCCGGGGCTCCCCCGCGGGCCGAGCTGGGAGAGCTCCTCACCTTCGCCACGGAGAAAGACAATAGGCGGCCGCTCCACCG------------GTGGCGGCGGCTAAAGCAGTGGCGACTGAGGCGAGCAGTGGACACTACGGTATCGGCGGAGCCCAAGCGCTCCTCCGCGGCTGCTCCGGCTCCGCGCTCCC-
i calJac3.chr10             I 3 C 0
e canFam3.chr30              1743556    0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I
e ponAbe2.chr15             81568210 1078 +  99152023 I

a score=1717713.000000
s hg38.chr15_KI270850v1_alt   303201 1089 +    430880 CTGCACGTAGCCCCAGCCACCCCGCGCACCGGCTACAAGCCGCCCGGGGGTGGCCGGGGCACGCAAGAGGGCAGTAACGTCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGGGCTGCGAGCTGGGATTGCACGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCGCTCAGGTTGCTAAGGGAGGCTGAGGTTGACCGCCGGGGCTGCTCTGTGGCAAAGTGATCACAGCAGGGTGGCTGGCAGAGACTGCTCTGGGAAATGCCCACTCACGGTCTCCTCTCCGCCCTGTTTCTAGAAACTGCCCTTTCTCTGTGTGCTCGTGGTTACCTGAGCTGTAGCATTTAACCACACATCGTGAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGAAGTGGGGTTTAGTCTTGTGTGTCCACAGCCTAGGACACTCTAAGGTATTAGGTATTAAATATAGGTATTAAACAAGTGTTGGATGGATGCACGGCGCTATGGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCAC--AGTCGTTCCGTGTTCAAGCTGCAAAGGACCTCAGAAATCATCGGATTGCTTTGAGAAAcaaaatgtggtccgtgtaccaacggcggccgaggagaatatattagttggtacacggagaaacttcttttttcaaatagttaagtgttttagtgctcattaggagggaaatgcctatcacgtcaaatcattgtttcattaatgttacttcttaggtcaaataaaaagtggc-aaaaaacaagtgtatttcaagaaaagtgttaagtgaaACTTGAGACACtttatatgcagttcaagaatgtaaaatactagttgacagtgcttgaagtaagaacagttggttaggtaggaggagaagattattggctgggaaggaggaggagggaaccctctgtggtgctgattctgtattttgacctgggtgatggataacaaaagtatgtacatcaataaaaaatacatccagtgcactttaga----ttagtgc-----------------------------------actttacACATTTTATACATGTATTTTT
s panTro4.chr15             80085704 1089 +  99548318 CTGCCCGTAGCCCCAGCCACCCCGCGCACCGGCTACAAGCTGCCCGGGGGTGGCCGGGGCACGCAAGAGGGCAGTAACGTCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGGGCTGCGAGCTGGGATTGCACGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCGCTCAGGTTGCTCAGGGAGGCTGAGGTTGACCGCCGGGGCTGCTCTGTGGCAAAGTGATCACAGCAGGGTGGCTGGCAGAGACTGCTCTGGGAAATGCCCACTCACGGTCTCCTCTCCGCCCTGTTTCTAGAAACTGCCCTTTCTCTGTGTGCTCGTGGTTACCTGAGCTGTAGCATTTAACCACACATCGTGAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGAAGTGGGGTTGAGTCTTCTGCGTCCACAGCCTAGGACAGTCTAAGGTATTAGGTATTAAATATAGGTATTAAACAAGTGTTGGATGGATGCACGGCGCTATGGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCAC--AGTCGTTCCGtgttcaagctgcaaaggacctcagaaatcatcGGATTGCTTTGAGAAAcaaaatgtggtccgtgtaccaacggcggccgacgagaatatattagttggtacacggagaaacttcttttttcaaatagttaagtgttttagtgctcattaggagggaaatgcctatcacatcaaatcattgtttcattaatgttacttcttaggtcaaataaaaagtggc-aaaaaacaagtgtttttcaagaaaagtgttaagtaaaACTTGAGACACtttatatgcagttcaagaatgtaaaatactagttgacagtgattgaagtaagaacagttggttaggtaggaggagaagattattggctgggaaggaggaggagggaaccctctgtggtgctgattctgtattttgacctgggtgatggataacaaaagtatgtacatcaataaaaaatacatccagtgcactttaga----ttagtgc-----------------------------------actttacACATTTTATACATGTATTTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81569288 1085 +  99152023 CTGCACATAGCCCCAGCCAGCCCGCGCACCTGCTACAAGCTGCCCCGGGGTGGGCGGGGCACGCAAGAGGGCGGTGACGCCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGAACTGCGAGCTGGGATTGCACGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTACGGCACCTGGGCGGGGCGCTCAGGTTGCTAAGGGAGGCTGAGGTTGACTGCCGCTGCTGCTCTGTGGCAAAGTGATCATAGTAGGGTGGCTGGCAGAGGCTGCTCTGGGAAATGCCCACCCACGGTCTCGTCTCCGCCCTGTCTCTAGAAACCGCCCTTTCTCTGTGTGCCGGTGGTTACCTGAGCTGTAGCACTTAACCACACGTCGAGAAATGATTTACTCCCCTATTTCCCCGACTTCAACTCAGGAAGTGGGGTTTAGTCTTCTGTGTGCACAGCCTAGGACAGTCTAAGGTATTAGGTATTAAATATAGGTATTAAACAAGTGTTGGATGGATGCACGGCGCTATGGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCACAAAGTCATTCCGTGTTCGAGATGCAGAGGACCTCAGAAATCATCGGATTGCTTTGACAAAcaaaatgtggtccgtgtaccaa------ccgaggagagtatattagttggtacaccaagaaacttcttttttcaaatagttaagtgttttagtgcgcattaggagggaaatgcctatcacgtcaaaccattgtttcatttatgttatttcttaggtcaaataaaaagtggc-aaaaaacaagtgtatttcaagaaaagcgttaagtaaaAATTGAGAccctttatatgcagttcaagaacgtaaaatactagttgacagtgattgaagtaagaacagttggttaggtgggaggagaagattattggctgggaaggaggaggagggaaccgtctgtggtgctggttctgtattttgacctgggtgatggataacaaaagtatgtatatgaataaaaaatacatccagtgcactttaga----tgagtgc-----------------------------------actttacACATCTTAAACATGTATTTTT
i ponAbe2.chr15             I 1078 C 0
s macFas5.chr7              65413328 1055 + 171882078 CTGCACACAGCCCCG-----CCTGCGCACCAGCTACAAGC-GCCCGAGGGTGGGCGGGGCACGCAGGAGGGCGGTAACGCCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGGGCTGCGAGCTAGGATTGCACGGCAGAGCTGCCCATCCCGCCCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAGGTTGCTAAGGGAGGCTGAGGTTGACTGCCACTGCTGCTTTGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGACTTCTCT--------------TACCGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTGCCAGTGGTTACCTGAGCTGCAGCACTTAACCACACATCGTGAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGAAGTGAGGTTTAGTCTTCTGTGTGCACAGCCTAGGACAGTCTAAGGTAT-------------TAGGTATTAAACAAGTGTTGGATGGATGCACGGCGGTATAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCACAAAGTCATTCCGTGTTCGAGCTGCAAACGACCTCAGAAATCATCTGGTTGCTTTGAGAAAcaaaatgtggtccgtgtaccaacggtggccgaggagaatatattagttgatacacaaagatacttcttttttcaaatagttaagtgttttagtgcgcattaggagggaaatgcctatcacgtcaaaccattgtttcattaatggtatttcttaggtcaaataaaaagtggc-aaaaaacaagtgtacttcaagaaaaatgttaagtaaaaattgagacactttatatgcagttcaagaacgtgcaaaactagttgacagtgactgaagtAaggacag-tggttaggtaggaggggacgattattgactgggaaggaagaggagggaa-cctctg-gttgctggttctgtattttgacctgggtgatggataacaaaagtgtatacatgaaaaaaaaatacatccagtgcacttaaga----ttagtgc-----------------------------------actttacACATTTTAAACATGTATTTTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59712360 1055 + 162156779 CTGCACACAGCCCCG-----CCTGCGCACCAGCTACAAGC-GCCCGAGGGTGGGCGGGGCACGCAGGAGGGCGGTAACGCCTGTGAGTCCTCCCGTGAGTACACGCGGAG-CGAGAGCTGCGAGCTAGGATTGCACGGCAGAGCTGCCCATCCCGCCCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAGGTTGCTAAGGAAGGCTGAGGTTGACCGCAGCTGCTGCTTTGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGACTTCTCT--------------CACTGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTGCCGGTGGTTACCTGAGCTGCAGCACTTAACCACACATCGTGAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGAAGTGAGGTTTAGTCTTCTGTGTGCACAGCCTAGGACAGTCTAAGGTAT-------------TAGGTATTAAACAAGTGTTGGATGGATGCACGGCGCTATAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCACAAAGTCATTCCGTGTTCGAGCTGCAAACGACCTCAGAAATCATCTGGTTGCTTTGAGAAACAACATGTGGTCCGTGTACCAACGGTGGCCGAGGAGAATATATTAGTTGATACACAAAGTTACttcttttttcaaatagttaAGTGTTTTAGTGCGCATTAGGAGGGAAATGCCTATCACGTCAAACCATTGTTTCATTAATGGTATTTCTTAGGTcaaataaaaagtggc-aaaaaacaagtgtacttcaagaaaaatgttaag-aaaaattgAGACACTTTATATGCAGTTCAAGAACGTGCAAAACTAGTTGACAGTGACTGAAGTAAGAACAG-TGGTTAGGTAGGAGGGGACGATTATTGactgggaaggaagaggagggaaccCTCTG-GGTGCTGGTTCTGTATTTTGACCTGGGTGATGGATAACAAAAGTGTatacatgaataaaaaatacatCCAGTGCACTTAAGA----TTAGTGC-----------------------------------ACTTTAcacattttaaacatgtattttt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3894036 1070 +  24206276 CTGCACACAGCCCCG-----CCTGCGCACCAGCTACAAGCTGCCCGAGGGTGGGCGGGGCACGCAGGCGGGCGGTAACGCCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CGAGGGCTGCTAGCTAGGATTGCAAGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAAGTTGCTAAGGGAGGCTGAGGTTGACCGCAGCTGCTGCTTTGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGACTGCTCTGGGAAATGCCCACCCACGGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTGCCGGTGGTTACCTGAGCTGCAGCACTTAACCACACATCGTGAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCGGGAAGTGAGGTTTAGTCTTCTGTGTGCACAGCCTAGGACAGTCTAAGGTAT-------------TAGGTATTAAACAAGTGTTGGATGGATGCACGGCGCTATAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCaccacaaagtcattccgtgttcgagctgcaaatgacctcagaaatcatctggtTGCTTTGAGAAAcaaaatgtggtccgtgtaccaacggtggcccaggagaatatattagttgatacacaaagatacttcttttttcaaatagttaagtgttttagtgcgcatt-ggagggaaatgcctatcacgtcaaaccattgtttcattaatggtatttcttaggtcaaataaaaagtggc-aaaaaacaagtgtacttcaagaaaaatgttaagtaaaaaatgagacactttatatgcagttcaagaacgtgcaaaactagttgacagtgactgaagtAagaacag-tggttaggtaggaggggacgattattgactgggaaggaagaggagggaaccctctg-ggtgctggttctgtattttgacctgggtgatggataacaaaagtgtatacatgaataaaaaatacatccagtgcacttaaga----ttagtgc-----------------------------------actttacACATTTTAAACATGTATTTTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18227352 1017 + 132174527 CAGAACACAGACCCAGCCTGCCCGCGCATGCGCAGCAGCCTGCCCG-GGGTGGGCGGGGCACGCGGGAGGGTTATAAAGCCCGAGAATCCTCCAGTGAATACACGCGGAGCCAAGGGCTACGAGCTGGGATTGCACGGCAGAGCTGCCCATTCCGCTCCACGACACCAATAGTAAGGCTCCTGGGCGGGGCACGCAGGTTGCTAAGGGAGGCTGAGGTTGACCGCCGCTGCTGCT-GGCGGCAAAGTGATCAAAGTGGGGTGGCCGGCTGAGGCTGCTCTGGGAAATGCCCACCCACGGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTCCTCTGTGTGCCAGTGGTTACCTGAACTGTAGCACTTAACCACACATCCTGAAATGATTTACTCCTCTATTTCCCCCACTTCAAATCAGGAAGTGGGGTTTAGTGTTCTGTGTCCACAGCCTAGCAGAGTC---ACTGC-------------TAGGTATTAAACAAGTGTTGCATGGATGCACGGTGCTATGGCGGAATCACGATTGTGACAGTGCATTCCG--------TGGCTACTAGATCaccacaaagtcattccgtgttcgagctgcaaaggacctcagaaatcatctggtTGCTTTGAGAAAcaaaatgtaatctatgtaccaactgtggccgaggagaatatattagctggtacacgaagaaacttcttttttcaaatagttaagtgttgtagtgctcattaggaggggaatgcctatcacgtcaaaccattgtttcattaat------------gtcaaataaaaagtggcaaaaaaaaaagtgtacttcaaaaaaagtgttaagtaaaAACT---CTTCTTGAAGTACACTTCAA--------------------------------------------------------------------------ggaggaggaggagagaaccctctggggtgctggttctgtattttgacctgggaggtggataacaaaagcatatacatgaatgaaaaatacatctagtgcactttacacgttttattgtTTTTCTTTTTTTATTTTTCTTTTCCACAGCCAGTAACTTTACACGTTTTAAACATGTATTTTT
i calJac3.chr10             C 0 I 542
e canFam3.chr30              1743556    0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=282774.000000
s hg38.chr15_KI270850v1_alt   304290 188 +    430880 AATGTCAATTTTTTAAAAATCTGGTATGGAATATACCCCCACAACCCCCCCCCCCCAAAAAAAATGCAAAGATGCAAATGACTGCCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTGTGAATACCTGATGTATGTGCCAGGAACTTCCATGGTTG
s panTro4.chr15             80086793 185 +  99548318 AATGTCAATTTTTTAAAAATCTGGTATGGGATATACCCCCACAACCCCCCCGCCCC---AAAAATGCAAAGATGCAAATGACTGCCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTGTGAATACCTGATGTATGTGCCAGGAACTTCCATAGTTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81570373 179 +  99152023 AATGTCAATTTTTAAAAAATCTGGTATGGGATATACCCCCA---------TCCCCCCAAAAAAATGCAAAGATGCAAATGACTGCCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTATGAATACCTGATGTGTGTGCCAGGAACTTCCATTGTTG
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              65414383 182 + 171882078 AATGTCAATTTTTT-AAAATATAGTATGGGATATGCCCCCA-----CCCCACCCCCAAAAATAATGCAAAGATGCAAATAACTGTCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTGTGAATACCTGATGTATGTACCAGGAACTTCCATTGCTG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59713415 182 + 162156779 aatgtcaatttttt-aaaatatagtatggGCTATGCCCCCA-----CCCCACCGccaaaaataatgcaaagatgCAAATAACTGTCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTGTGAATACCTGATGTATGTACCAGGAACTTCCATTGCTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3895106 182 +  24206276 AATGTCAATTTTTT-AAAATATAGTATGGGATATGCCCCCA-----CCCCACCCCCAAAAATAATGCAAAGATGCAAATAACTGTCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTACTGTGAATACCTGATGTATGTACCAGGAACTTCCATTGCTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             18228911 169 + 132174527 AATGTCAGCTCTTA-AAAATCTGGCACGGGATACACCCCCC---------ACCCAAAAAAAGAATGCCAAG--------GACTGCCATTTGGGAAACACTGACGCAGGCAGGCTCAC-AGCAGTGACCAAATACCTGAGAAAGGGTATTATGAATACCTGATGTGTGTAACAAAAACTTCCATTGTTG
i calJac3.chr10             I 542 n 542
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=380833.000000
s hg38.chr15_KI270850v1_alt   304478 332 +    430880 AATAGCTCCAAATCTCAGAAATGCTCCTAACCTCGTGTTGAGCTCTGGTGCATAGATATATTTTCTTTTC---tttctttccttttttt-ttttttttttttgaggcagagtttcactcttgttgcccaggctggagtgcaatggcacgatatcagctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagctgcccgagtagctggaattacaggcacatgccaccaattccagctaattttttgtatttttagtagagacagggtttcactatgttggccaggctggtctcgaactcctgacttcaggtgatccacccacc
s panTro4.chr15             80086978 333 +  99548318 AATAGCTCCAAATCTCAGAAATGCTCCTAACCTAGTGTTGAGCTCTGGTGCATAGATATAttttcttttcttttttctttctttctttc-ttttttttttttgaggcagagtttcactcttgttgcccaggctggagtgcaatggcacgatatcagctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagctgcccgagtagctggaattacaggcacatgccaccaattgcagctaattttttgtatttttagtagagac--ggtttcaccattttggccaggctggtctcgaactcctgacttccggtgatccacccacc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81570552 334 +  99152023 AATAGCTCCAAATCTCAGAAATGCTCCTAACCTAATGTTGATCTCTGGTGCATACATATATTTTCTTTTC--ttttctttctttctttctttttttttttttgagtcagagtttcactcttgttgcccacactggagtgcaatggcgcaatatcagctcaccgcaacctccgcctcccaggttcaagcgattctcttgcctcagctgcccgagtagctggaattacaggcacatgccaccacgcctggctaattttttgtacttttagtagagacggggtttcaccatgttggccaggctggttttgaactcctaacttcaggtgatccacccacc
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              65414565 318 + 171882078 AATAGCTCCAAATCTCAGAAATGCTCCTAAGCTAATGTTGAGCTCTGGTGCGTACATATAttctcttc---------------ttcttc-tttttttttttggaagcggagtttcactc--gttgcccaggctggagtgcaatggtccgatatcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagctgcccgagtagctggaattacaagcacacgccaccatgcccggctaatgtattgtatttttagtagaaatggggtttcaccatgttgactaggctggtctcgaactcctgacttcaggtgatccacctgcc
i macFas5.chr7              C 0 I 291
s papAnu2.chr7              59713597 322 + 162156779 AATAGCTCCAAATCTCAGAAATGCTCCTAAGCTAATGTTGAGCTCTGGTGCGTACatatattctcttctt-----------tttttttt-tttttttttttggaagcagagtttcactc--gttgcccaggctggagtgcaatggtccgatatcagctcactgcaacctccacctcccaggttcaagcgattctcctgcttcagctgcccgagtagctggaattacaagcacacgccaccatgcccggctaatgtattgtatttttagtagaaatggggtttcaccatgttgactaggctggtctcgaactcctgacttcaggtgatccacctgcc
i papAnu2.chr7              C 0 I 291
s chlSab2.chr29              3895288 317 +  24206276 AATAGCTCCAAATCTCAGAAATGCTCCTAAGCTAATGTTGAGCTCTGGTGCGTACATATAttctcttc---------------ttttct-tttttttttttggaagcagagtttcactc--gttgcccaggctgga-tgcaatggtccgatatcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagctgcccgagtggctggaattacaagcacatgccaccatgcccggctaatgtattgtatttttagtagaaatggggtttcaccatgttgactaggctggtctcgaactcctgacttcaggtgatccacctgcc
i chlSab2.chr29             C 0 I 289
e calJac3.chr10             18229080 542 + 132174527 I
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=2865.000000
s hg38.chr15_KI270850v1_alt   304810 2 +    430880 tc
s panTro4.chr15             80087311 2 +  99548318 tc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81570886 2 +  99152023 tc
i ponAbe2.chr15             C 0 I 285
s macFas5.chr7              65415174 2 + 171882078 tc
i macFas5.chr7              I 291 C 0
s papAnu2.chr7              59714210 2 + 162156779 tc
i papAnu2.chr7              I 291 C 0
s chlSab2.chr29              3895894 2 +  24206276 tc
i chlSab2.chr29             I 289 C 0
e calJac3.chr10             18229080 542 + 132174527 I
e canFam3.chr30              1743556 0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=305381.000000
s hg38.chr15_KI270850v1_alt   304812 251 +    430880 ggcctcccaaagtgctgggattacaggcttacaggtgtgagcctcagcacccaaccCAGAATGGCTTaa-----a---aaaaaaaaaaaaaaaaaaaGGCCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTCATCATGCTGCTCACCCTCTTCCACTGTTCTCTAATCTGTCCTTGTTGATATTTAAAAGCTGGCACAAggccgggcgcagt-gctcacacctgtaatcccagcactttgggaggct
s panTro4.chr15             80087313 250 +  99548318 ggcctcccaaagtgctgggattacaggcttacaggtgtgagcctcagcacccaaccCAGAATGGCtt-------a---aaaaaaaaaaaaaaaaaaaggccaagcatgcccagttcttcatgtgaaattatttctgtatcacctcatcatgctgctcaccctcttccactgttctctaatctgtccttgttgatatttaaaagctggcacAAggccgggtgcagtggctcacatctgtaatcccagcactttgggaggcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81571173 244 +  99152023 ggcctcccaaagtgctgggattacaggcttacaggtgtgagcccccacgcccaaccCAGAATGGCTT----------------AAAAAACAAAAAAAGGTCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTCATCATGCTGCTCACCCTCTTCCACTGTTCTCTAATCTGTCCTTGTTGATATTTAAAAGCTGGCACAAggccgggcgcagtggctcacacctgtaaccccagcaatttgggaggct
i ponAbe2.chr15             I 285 C 0
s macFas5.chr7              65415176 252 + 171882078 ggcctcccaaagtgctgggattacaggc--------atgagcccctgtgcccagccCAGAATGGCTTTTTTTTTaaaaaaaaaaaaaaaaaaaaaaaGGTCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTTATCATGCTGCTCACCCTCTTCCACTGTTCTCTAATCTGTCCTTGTTGATATTTAAAAGCTGGCACAAggccaggcacagcggctcacacctgtaatcccagcactttgggaggct
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59714212 243 + 162156779 ggcctcccaaagtgctgggattacaggc--------atgagcccctgtgcccagcccagaatggctttt---------aaaaaaaaaaaaaaaaaaaggtcaagcaTGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTTATCATGCTGCTCACCCTCTTCCACTGTTCTCTAATCTGTCCTTGTTGATATTTAAAAGCTggcacaaggccaggcacagcggctcacacctgtaatcccagcactttgggaggct
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3895896 249 +  24206276 ggcctcccaaagtgctgggattacaggc--------atgagcccctgtgcccagccCAGAATGGCTTTTTTTTaa---aaaaaaaaaaaaaaaaaaaGGTCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTCATCATGCTGCTCACCCTCTTCCACTGTTCTCTAATCTGTCCTTGTTGATATTTAAAAGCTAGCACAAggccgggtgcagtggctcacacctgtaatcccagcactttgggaggct
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             18229080 542 + 132174527 I
e canFam3.chr30              1743556   0 -  40214260 I
e nomLeu3.chr6              19259148 7475 - 121039945 I

a score=542497.000000
s hg38.chr15_KI270850v1_alt   305063 313 +    430880 gaggagggtagatcactagagcccaggagttcgagaccagcctgggctacaggtgaaaccccatctgtactaaaagatacaaaaattagccaaacgtggtagcccaaatcccagctacttgggagaccgatgtagaaggatcgcttgagcccaggagg-agaggttgca-tgagccAAATCAGCAGGGCAGCTGCAGAGTGGGGTGCAAGGTCCTCAACCCAGAGGTTCCCTAGGCCCCACTTGCCCCAGCTCATGAGAGCCTGGTTCTGAGCTCTGCCAGGACTGGGGCTCAGCACTGCCCATGAAAACAGGCG
s panTro4.chr15             80087563 313 +  99548318 gaggagggtagatcactagagcccaggagttcgagaccagcctgggctacaggtgaaaccccatctgtactaaaagatacaaaaattagccaaacgtggtagcccaaatcccagctacttgggagaccgatgtagaaggatcgcttgagcccgggagg-agaggttgca-tgagccAAATCAGCAGGGCAGCTGCAGAGTGGGGTGCAAGGTCCTCAACCCAGAGGTTCCCTAGGCCCCACTTGCCCCAGCTCATGAGAGCCTGGTTCTGAGCTCTGCCGGGACTGGGGCTCAGCACTGCCCATGAAAACAGGCg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81571417 313 +  99152023 gaggagggtagatcagtcgagcccaggagttcgagaccagcctgggctacaggtgaaaccccatctgtactaaaagatacaaaaattagccaaacatggtagcccagatcccagatacttgggagatcgaggtagaaggatcgcttgagcccgggagg-agaggttgca-taagccAAATCAGCAGGGCAGCTGCAGAGTGGGGTGCAAGGTCCTCAACCCAGAGGCTCCCTAGGCCCCACTTGCCCCAGCTCATAAGAGCCTGGTTCTGAGCTCTGCCAGTACTGGGGCTCAGCACTGCCCATGAAAACAGGCG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6              19266623 315 - 121039945 gaggagggtagatcactcaagcccaggagttcgagaccagcctgggctacaggtgaaaccccgtctgcactaaaagatacaaaaattagccaaacgtggtagcccaaatcccagctacttgggaggccgaggtagaaggattgcttgagcccgggaggcagaggtagcagtgagccAAATCAGCAGGGCAGCTGCAGAGTGAGATACAAGGTCCTCAACCCAGATGCTCCCTAGGCCCCACTTGCCCCAGCTCATGAGAGCCTGGTTCTGAGCTCTGCCAGGACGGGGACTCAGCACTGCCCATGAAAACGGGCG
i nomLeu3.chr6              I 7475 I 319
s macFas5.chr7              65415428 315 + 171882078 gaggaggataaatcactcgagtccaggagttcgagaccagcctgggctacaggggaaaccccgtctgtactaaaagatacaaaaattagccaagcatggtagcccaaatcccagctacttgggaggccgaggtagaaggatcacttgagccggtgaggcagaggttgcagtgagccAAATCAGCAGGGCAGTTGCAGAGTAGTACGCAAGATCTTCAACCCAGAGACTCCCTAGGCCCCACTTGCTCCAGCTCAAGAGAGCCTGGTTCTGAGGAATGCCAGGACTGGGGCTTAGCGCTGCCCATGGAAACAGTCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59714455 315 + 162156779 gaggaggataaatcactcgagtccaggagtttgagaccagcctgggctacaggggaaaccccgtctgtactaaaagatacaaaaattagccaagcatggtagcccaaatcccagctacttgggaggccgaggtagaaggatcacttgagccggtgaggcagaggttgcagtgagccaaatcagCAGGGCAGTTGCAGAGTAGTACGCAAGATCTTCAACCCAGAGACTCCCTAGGCCCCACTTGCTCCAGCTCAAGAGAGCCTGGTTCTGAGGTCTGCCAGGACTGGGGCTTAGCGCTGCCCATGGAAACAGTCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3896145 315 +  24206276 gaggaggataaatcactcgagtccaggagttcgagaccagcctgggctacaggggaaaccccgtctgtactaaaagatacaaaaattagccaagcatggtagcccaaatcccagctacttgggaggccgaggtagaaggatcacttgagccggtgaggcagaggttgcagtgagccAAATCAGCCGGGCAGTTGCAAAGTAGTATGCCAGATCCTCAACCCAGAGACTCCCTAGGCCCCACTTGCTCCAGCTCAAGAGAGACTGGTTCTGAGGTATGCCAGGACTGGGGCTTAGCACTGCCCATGGAAACAGTCA
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             18229080 542 + 132174527 I
e canFam3.chr30              1743556   0 -  40214260 I

a score=268670.000000
s hg38.chr15_KI270850v1_alt   305376 156 +    430880 TGGCAGGGAAGAAAATCATAACCAAATATTTGTAGTCACCTCTCTCCTCCCTTCTGGAAAGGGAGGTTCCCAGGTTTGTGGGCTCTTTGCCTCCTGGACATTATTGTGTAGTGAAGGGAGAAAGGTTGAGATGCAGAGTTGGAGAAACTAAGAGAG
s panTro4.chr15             80087876 156 +  99548318 tggcagggaagaaaatcataaccaaatatttgtagtcacctctctcctcccttctggaaagggaggttcccaggtttgtgggctctttgcctcctggacattattgtgtagtgaagggagaaaggttgagatgcagagttggagaaactaagagag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81571730 148 +  99152023 TGGCA-GGAAGAAAATCATAACCAAATA-TTGTAGTCACCTCTCTCCTCCCTTCTGGAAA-GGAGGTTCCCTGGTTTGTGG--CTCTTGCCTCCTGTACATTATTGTGTAGTGAAGG--AGAAGGTTGAGATGCAGAGTTGGAG-AACTAAGAGAG
i ponAbe2.chr15             C 0 n 0
s nomLeu3.chr6              19267257 156 - 121039945 TGGCAGGGAAGAAAATCACAACCAAATATTTGTAGTCCCCTCTCTCTTCCCTTCTGGAAAGGGAGGTTCCCTGGTTTGTGGTCTCTTTGCCTCCTGGACATTATTGTATAGTGAAGGGAGAAAGGTTGAGATGCAGAGTTGCAGAAACTAAGAGAG
i nomLeu3.chr6              I 319 C 0
s macFas5.chr7              65415743 156 + 171882078 TGCCAGGGAAGAAAATCATAACCATATATTTGTAGTCACCTCTCTCCTCCCTTCTGGAAAGGGAGGTTCCCTGGTTTGTGGGCTCTTTGCCTCCTGGACATTATTGTGTAGTGAAGGAAGAAAGGTTGAGATGCAGAGTTGGAGAAACTAAGAGAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59714770 156 + 162156779 TGCCAGGGAAGAAAATCATAACCATATATTTGTAGTcacctctctcctcccttctggAAAGGGAGGTTCCCTGGTTTGTGGGCTCTTTGCCTCCTGGACATTATTATGTAGTGAAGGAAGAAAGGTTGAGCTGCAGAGTTGGAGAAACTGAGAGAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3896460 156 +  24206276 TGCCAGGGAAGAAAATCATAACCACATATTTGTAGtcacctctctcctcccttctggaaagggaggttccctggtttgtgggctctttgcctcctggacattattgtgtagtgaaggaagaaaggttgagatgcagagttggagaaactaagagag
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             18229080 542 + 132174527 I
e canFam3.chr30              1743556   0 -  40214260 I

a score=1322917.000000
s hg38.chr15_KI270850v1_alt   305532 1066 +    430880 GCCGAACTGGTCCATTTGAGGAAAGATGACTGATCCCAGAAGGGGAGGAGGGGACACCCTGGGGAAGCAGGGGACTTCCCACGTGGTCCTAGAAGGGGAGGGCAGGATATAGAAAGTCAGAGCATGGTTTTGAGTTTTGGAGACAACAAGAGAAAAGAGGGAGGGATTTGGACAACTATGGAGAGGACTGGGCTGTGGAGAGAAATGTTTAGAGATTTGGAAGATGGTGTGTCATGCGATGTATTGTGAAAACCCCTTCTTCATATCCCTAAAAGACCACCGCTGATGGTGATTCATGGTACAATTGATGATTGTATCATGATATAATTCAGTGCTTTTGCAGAGGGATTGGTGCCTTTTTAAAATAATAATGATGCTTTGGCTTGGCTCCATCTGAATTAGTAGAGACAGACATCTTGAGCAGGTTTTATCAGAGTTCCATTAGCTAAATATTGGGTTTCCTATTTTGTGGCTTGCTTTAAACCGCTTTGTGGGCCCTTCCGCACTGAAAGCCACTACAGAAATCACCTCTTTGGTCTGCAGCTCCATGTCCCCAAGCTCTGGGCTTTCCTGAATGAGTGGCCTCATTCAGAAGATAATACagcatccctcatctgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagtgccgacatgatgttcgaaggccagattcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctga--aaaaaatccaaaatctgaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCATCCCTCCTGCTCCTCACCCTCCCACTGGCTTGTGCCTCACCCCCCAGCCTCCCTTGCACCTGCTGGGAAGGGGACAGGATGCTCCTGCCCTGCCTTCTTGGATCTCAGGCTACTGTGATAATTGCAGGATTCCAGCCAGGGAAAATGCTACAGGTAGAAGTACTTGGTACTCTCCATAGAGAAGTTTCCAGCAATGGCACAGCAGCCCCGGGAA
s panTro4.chr15             80088032 1066 +  99548318 gccgaactggtccatttgaggaaagATGACTGATCCCAGAAGGGGAGGAGGGGACACCCTGGGGAAGCGGGGGGCTTCCCAGGTGGTCCAAGAAGGGGAGGGCGGGATATAGAAAGTCAGAGCATGGTTTTGAGTTTTGGAGACAACAAGAGAAAAGAGGGAGGGATTTGGACAACTATGGAGAGGACTGGGCTGTGGAGGGAAATGTTTAGAGATTTGGAAGATGGTGTGTCATGCGATGTATTGTGAAAACCCCTTCTTCATATCCCTAAAAGACCGCCGCTGATGGTGATGCATGGTACAATTGATGATTGTATCATGATATAATTCAGTGCTTTTGCAGAGGGATTGGTGCCTTTTTAAAATAATAATGATGCTTTGGCTTGGCTCCATCTGAATTAGTAGAGACAGACATCTTGAGCAGGTTTTATCAGAGTTCCATTAGCTAAATATTGGGTTtcctagtttgtggcttgctttaaaccactttgtaggcccttctgcactgaaagccactacagaaatCACCTCTTTGGTCTGCAGCTCCACGTCCCCAAGCTCTGGGCTTTCCTGAAGGAGTGGCCTCATTCAGAAGATAATACagcatccctcatccgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagtgccgacatgatgttcgaaggccagattcaaaggaaatgctcattggagccttttggatttcagattttcgaattccaaaatctga--aaaaaatccagaatctgaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCATCCCTCCTGCTCCTCACCCTCCCACTGGCTTGTGCCTCACCCCCCAGCCTCCCTTGCACCTGCTGGGAAGGGGACACGATGCTCCTGCCCTGCCTTCTTGGATCTCAGGCTACTGTGATAATTGCAGGATTCCAGCCAGGGAAAATGCTACAGGTAGAAGTACTTGGTACTCTCCACAGAGAAGTTTCCAGCAATGGCACAGCAGCCCTGGGAA
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6              19267413 1040 - 121039945 GCCAAACTGGTCCATTTGAGGAAAGATGAGTGATCCCAGGAGGGGAGGAGGGGACACCCCGGGGAAGCGGGGGGCTTCCCAGGTGGTCCAAGAAGCAGAGGGCGGGATATAGAAAGTCAGAGCATGGTTTTGAGTTTTGGAG---ACAAGAGAAAAGAGGGAGGGATTTGGACAACTATGGAGAGGACTGGGCTGTGGAGAGAAATGTTTAGAGATTTGGAAGATGGTGTGTCGTGCGATGTATTGTGAAAACCCCTTCTTCATATCCCTAAAAAACCACCACTGATGGTGAT-----------------------TCATGATACAATTCAGTGCTTTTGCAGAGGGATTGGTGCCTTTTTAAAATAGTAATGATGCGTTGGCTTGGCTCCATCTGAATTAGTAGAGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTGGGTTTCCTATTTTGTGGCTTGCTTTAAACTACTTTGTAGGCCCTTCCGCACTGAAAGCCACTTCAGAAATCACCTCTTTGGCCTGCAGCTCCATGTCCCCAAGCTCTGGACTTTCCTGAATGAGTGGCCTCATTCAGAAGATAGTACagcatccctcatccaaaaatcccaaatctgaaatgcttcaacatccaaaactgtttgagtgccgacatgatgttcgaagtcctggttcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctga--aaaaaatccaaaatctgaaatacttatgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGAGGCAGCAAGCAGTCAACAGAGGCTCATCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGTTTGTGCCTCACTCCCCAGCCTCCCTTGCACCTGCTGGGAAGGGGACATGATGCTCCTGCCCTGCCTTCTTGGATCTTGGGCTACTGTGACAATTGTAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAGTACCTGGTACTCTCCACAGAGAAGGTTCCAGCAATGGCACAGCAGCCCCAGGAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65415899 1038 + 171882078 GCCAAACTGCTCCATTTGAGGAAAGATCAGGGATCCCAGGAGGGAAGAAGGGGACACCCTGGGGAATCAGGGGGCTTCCCAGGTGGTCCAAGAAGGGGAGGGCAGGATACAGAAAGTCAGAGCATGGTTTTGAGTTTTGGAGACAACAAGAGAAAAGAGGGGGGGATTTGGACAACTATGGAGAAGACTGCGCTGGGGAGAGAAATGTTTAGAGATTTGGAAGATAGTGTGTTGAGCGATCTATTGTGAAAACACCTTCTTTATATCCCTAAAAAACCACCAGCGATGAT--------------------------TCACGATACAATTCAGTACTTTTGCAGAGGGACTGGTGCCTTTTTCAAATGATAATAATGCATTGGCTTGGCTCCATTTGTGTTAGT--AGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTAGGTTTCCTATTTTGTGGCTTGCCTTAAACCACTTTGGAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTCTGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTTTCCTAAATGAGTGGCCTCATTCAGAAGATAATACagcatccctcatccgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagcgccgatatgatgttcgaaggccaggttcaaaggaaatgcttattggagcgttttggatttcagattttcgaattccaaaatctgt--aaaaaatctgaaatctgaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGACGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGCTTGTGCATCACCCCCCGGCCTCCCTTGCACTCGCTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGATCTTGGGCCACTGTGACAATTGCAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAATACTCAGTACTCTCCATAGAGCAGATTCCAGCAATGGCACAGCAGCCCCGGGAA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              59714926 1038 + 162156779 GCCAAACTGCTCCATTTGAGGAAAGATCAGGGAtcccaggaggggaggaggggacacCCTGGGGAATCAGGGGGCTTCCCCGGTGGTCCAAGAAGGGGAGGGCAGGATACAGAAAGTCAGAGCATGGTTTTGAGTTTTGGAGACAACAAGAGAAAAGAgggggggATTTGGACAACTATGAAGAAGACTGGGCTGGGGAGAGAAATGTTTAGAGATTTGGAAGATAGTGTGTTGTGCGATCTATTGTGAAAACACCTTCTTTATATCCCTAAAAAACCACCAGCGATGAT--------------------------TCATGATACAATTCAGTGCTTTTGCAGAGGGATTGGTGCCTTTTTCAAATGATAATAATGCATTGGCTTGGCTCCATCTGTGTCAGT--AGACAGACATCTTGAACAGGTTTTATCAGTGTTCCATTAGCTAAATATTAGGTTTCCTATTTTGTGGCTTGCCTTAAACCACTTTGGAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTCTGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTTTCCTAAATGAGTGGCCTCATTCAGAAGATAATACAGCATCCCTCATCTGAAaacccaaaatctgaaatgcttcaaaatccaaAACTGTTTGAGCGCCGATATGATGTTCGAAGGCCaggttcaaaggaaatgctcattggagcattttggatttcagattttcgaATTCCAAAATCtgc--aaaaaatctgaaatccgaaATACTTCTGTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGTTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGCTTGTGCATCAccccccagcctcccttgcactCGCTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGCTCTTGGGCCACTGTGACAATTGCAGGATTCCAGCCAGCGAAAGTGCTACAGGTAGAAGTACTCAGTACTCTCCATAGAGCAGATTCCAGCAATGgcacagcagccccaggaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3896616 1040 +  24206276 gccaaactgctccatttgaggaaagatcagggatcccaggaggggacgaggggacaccctggggaaccagggggcttcccaggtggtccaagaaggggagggcaggatacagaaagtcagagcatggttttgagttttggagacaacaagagaaaagagcgggggatttggacaactatggagaagactgggctggggagagaaatgtttagagatttggaagatagtgtgttgtgtgatctattgtgaaaacaccttctttatatccctaaaaaaccaccagcgatgat--------------------------tcatgatacaattcagtgcttttgcagagggattggtgcctttttcaaatgataataatgcgttggcttggctccaTCTGTGTTAGT--AGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTAGGTTTCCTATTTTGTGGCTTGCCTTAAACCACTTTGGAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTTTGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTTTCCTAAGTGAGTGGCCTCATTCAGAAGATAATACGgcatccctcatccgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagcgccgatatgatgttcgaagaccaggttcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctgtaaaaaaaatctgaaatcagaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGTTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGCTTGTTCATCACCCCCCGGCCTCCCTTGCACCCACTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGATCTTGGGCCACTGTGACAATTGCAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAGTACTCAGTACTCTCCATAGAGCAGATTCCAGCAATGGCACAGCAGCCCCGGAAA
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             18229080  542 + 132174527 I
e canFam3.chr30              1743556    0 -  40214260 I
e ponAbe2.chr15             81571878    0 +  99152023 I

a score=2164976.000000
s hg38.chr15_KI270850v1_alt   306598 1294 +    430880 gtgtgctgccacacccagctaattttaaaaactttctgtagaggtgtgaattcactatgctgccaaggttggtcttgaattcctggcttcaagtaatcctcccacctttgcttgccaaagtgctgggattac-ggcatgaactagagctcccagccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTTGGCAGGACTTTTGTTTCAGTATTGAACAGATGGAACTGTTTAGTTCTTCATCTTTGCAGGTATACCAAATGTGCCTACCAGGAGTCTGCTTTATAGCCATTGAAAAGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGAC--AAGTATTTTGGCTTAATTCTATTAACTTGGAAGGATGAAGGTGAAAAAAAATTCAAAACTTTAATTTCCTGTTTATTGCCATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCCAGTAAGTTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTCCTAGTGTGCCTGAGTCTTACATTGTGAAGATCCTTCTCTAAAACTTCACATGTAAGAGAATATAAATGATATTGGATAAGATCAGGCTGGATGAGAACTGATACCTGTAAATATGCGATTTAGACGAAATCTCTGA-------TTGTTTTCTTATTTAACTCATAAAAATAAAACTCATTGGCTGGAAGGTGGGAGCAGGAAGGAGATTTATGTCTTTTAATTGCACGTCATTGTTTCATATAGAGACAGAACATATAGTATCCCTGGTTTTGGACCTACAGAATGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggattactgcagcacagattgctgagccctactccagagtttctgattcatcaggtccagggtggggcctgagaatgtgtatttataagaagttcccaggtgctgctggagctgctagtccagagactacatttttgagaactgctCTCATATACTAACTGTAAATTGCAGAGCTCTAGAAAAAAAGCTTAGTTTGGTGTGGGATAAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAATACACAGTGACATAACA-AATTCTTGGTTTTCATGACTGCAAGTGAGAGCCAAGTATCAAGTGAGAAATTCAGCTTCATTTGCAAGGCTTAGAGAGGCCAGGTGATT
s panTro4.chr15             80089098 1293 +  99548318 gtgtgctgccacacccagctaattttaaaaactttctgtagaggtgtgaattcactatgctgccaaggctggtcttgaattcctggcttcaagtaatcctcccgcctttgcttgccaaagtgctgggattac-ggcatgaactagagctcccagccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTTTGCAGGACTTTTGTTTCAGTATTGAACAGATGGAACTGTTTAGTTCTTCATCTTTGCAGGTATACCAAATGTGCCTACCAGGAGTCTGCTTTATAGCCATTGAAAAGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGAC--AAGTATTTTGGCTTAATTCTATTAACTTGGAAGGATGAAGGTGAAAAAAAATTCAAAACTTTAATTTCCTGTTTATTGCCATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCCAGTAAGTTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTCCTAGTGTGCCTGAGTCTAGCATTGTGAAGATCCTTCTCTAAAACTTCACATGTAAGAAAATATAAATGATATTGGATAAGATCAGGCTGGATGAGAACTGATACCTGTAAATATGCGATTTAGACGAAATCTCTGA-------TTGTTTTCCTATTTAACTCATAAAAATAAAACACATTGGCTGGAAGGTGGGAGCAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATATAGAGACAGAACATATAGTATCCCTGGTTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggattactgcagcacagattgctgagccctactccagagtttctgattcatcaggtccagggtggggcctgagaatgtgtatttataagaagttcccaggtgctgctggagctgctagtccagagactacatttttgagaactgctCTCATATACTAA-TGTAAATTGCAGAGCTCTAGAAAAAAAGCTTAGTTTGGTGTGGGATAAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGTAATACACAGTGACATAACA-AATTCTTGGTTTTCATGACTGCAAGTGATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCAGGTGATT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15             81672147 1301 +  99152023 gtgtgccaccacacccagctaatttttaaaaatttttgtggagatgtgaattggctatgctgcccaggctagtcttgaactcctgacttcaagtaatccccccaccttggcttgccaaagtgctgggattacaggcgtgagctcctgctcctggccGAGAGTTTAGTTTTGTTTGCTAGTGGGCTTCTTGGTATCTTTTCATATTTGAGGCTTTGG-GCTAGTGCTGAAGTATTACACTCACCATCCGAGGTCTACAGGACTTTTGGTTTAATATTGAACAGATGGAACTGTTTAGTTTTGCATCTTTGCAGGCATACAGAATGTGCCTACCAGGAATCTGCATTATATCCATTG-AGAGCAAGAAATAATACAGGAAAATTTTGCCTGCATAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTAACTTGGAAGCATGAAGGTGAAAAAAAATTCAAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATAGAGCCAACGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCCTGAGTCTTACATTGTGAAGATACTTTTTTAGAACTTGAGATGTAAGAGGATATAAATGGTTTTGTAGGAGATCAGGCTGGATGAGAATGGACACTTGTAAACATACTTTTTAGACTAAATCTCTGATTGCCACTTGTTTTCTTATTGAACTCATAAAAATAAAACACATTGGATGGAGGGTGCGAGTAGGAAGGAGATTCATGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATGTGGTAACCCTGGCTTTGGACCTATAGAAGGAAACACATTTTACTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggattactgcagcacacattgctgaaccctacttcagagtttctgattcaccaggtccagggtggggcctgagaatttccacttataaaaaggtctcaggtgctgctggtgctgctagtccatagactaca-tttagagaaccactCTTGTCTATTAACTGTTAATTGTGGAACTCTAG-AAAAAATCTTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGCAGAAAATCATGGAAGATTCAACCCTTGATCCCAGCCTCGTGTGGATTTCAGGTAACAAGCAATACAGAGTGACATAGCACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATCAAGTGAGAAATTCAGTTTCATTTACAGGGCTTAGAGAGGCCAGGTGATT
i ponAbe2.chr15             n 0 C 0
s nomLeu3.chr6              19268453 1302 - 121039945 gtgtgctgccacatccagctaattttaaaaactttttgtagagatgtgaattcactatgctgcccagactggtcttgaactcctgacttcaagtcatcctcccaacttggcttgccaaagtgctgggattat-tgcatgaactagagctcccggcTGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTTTGCAGGACTTTTGTTTCAGTATTGAACAGATGGAACTGTTTAGTGCTTCATCTTTGCAGATATACCAAATGTGCCTACCAGGAGTCTGCTTTATAGCCATTGAAAAGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGACTGGAGTATTTTGGCTTAATTCTATTAACTTGGAAGGATGAAAGTGAAAAAAAATTCAAAACTTTAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGATTCCACCTTTCTTCTCCAGTAAGTTTGGACATTCTGATCTACTTGCTGTTTTATTATAGAACTCCTAGTGTGCCTGAGTCTTACATTGTGAAGACCCTTTTCTAAAACTTCACATGTAAGAGAATATAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAAATAAATGTTTTAGATGAAATCTCTGATTGCCACATGTTTTCTTATTTAACTCATAAAAATAAAACACATTGGCTGGAGGGCGGGAGCAGGAAGGAGGTTTATGTCTTTTAATTGCGTGTCATTGTTTCATACCGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTGTGCCAGAGGCTCTTTAAcagctggagggattactgcagcacagattgctgagccctactgaggagtttctgattcatcagatccagggtggggcctgagaatttgta-ttataagaagttcccaggtgctgctggagctgctagtccagagactacatttttgagaaccactCTCATATACTAACTGTAAATTGCAGAGCTCTAG-AAAAAAGCTTAGTTTGGTGTGGGATCAGAAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATTCCAGCCTACTGTGGAATTCAGGTAACAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCGAGTGATT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              65416937 1282 + 171882078 gtgtgctgacacacctagctaatttttaaaactttttgtagagatgtgaactcactatgctgcccagactggtctcgaactcctgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattac-ggcatgaactagtgctcccggccAAGAGTTTACTTTCGATTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGGGCTAATGGTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATCTTGAACAGATGGAACTGTTTAGGTCTGCATCTTTGCAACTATACAAAATGT---------GAGTCTGCTTTATAGCCATTGAAAAGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGGCTGGAGTATTTTGGCTTAATTCTATT------GGAAGATGAAGGTG-AAAAAAATTCAAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATAACCAATGATTCCAGTTTTCTTCTCCAGTAATTTTGGACATTCTGATCTACTTGGTGTTTTATTACAGAACTCCTAGTATGCCTGAGTCTTACATTGTGAAGATCCTTTTCTAAAATTT-ACACATAAGAGGATATAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAAATATACGTTTTAGATTAAATCTCTGATTGCCACTCATTTTCTTATTTAACTCATAAAAATAAAACACATTGGATGGAGGGTGGGAGT----AGGAGATATACGTCTTTTAATTGCATGTCATTTTCTCATTTTGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAATACATTTTACTACCTGCTATATGCCAGAGGTTCTTGAAcacctggagggactactgcagcaccgattgctgagccctagtccagagtttctgattcatcaggtcctgggtggggcctgagaatttgcatttataagaagttcccaggtgctgctagagctgctggtccagagactacatgtttgaaaaccactCTTATATACTAACTGTAAATTGCAGAACTCTAG-AAAAAAGCTTAGTTTGGTCTGGGATAAGAAGCATACAGGTTATGGAGCAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTTACAAGCAATACACGGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATTGAGTGAGAAATTCAGTTTCATTCACAGGGCTTAGAGAGGCCAGGTGATT
i macFas5.chr7              C 0 N 0
s papAnu2.chr7              59715964 1286 + 162156779 gtgTGCtgacacacccagctaatttttaaaactttttatagaTATGTGaactcactatgctgcccagactggtctcgaactcctgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattac-ggcatgaACTAGTGCTCCTGGCCAAGAGTTTACTTTCGATTGCTAGTGGTGTTCTTGGTATCTTTTCACATTTGAGGCTTTGGGGCTAATGGTGAAGTATTACACTCACCATCTGAGGTTTACAGgacttttgttttaatattgaaCAGATGGAACTGTTTAGGTCTGCATCTTTGCAACTATACAAAATGT---------GAGTCTGCTTTATAGCCATTGAAAAGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGGCTGGAGTATTTTGGCTTAATTCTATT------GGAAGATGAaggtg-aaaaaaattcaaaacttaaatTTGCTGTTGAatgcaatttgaaaatataaccAATGATTCCAGTTTTCTTCTCCAGTAATTTTGGACATTCTGATCTACTTGGTGTTTTATTACAGAACTCCTAGTATGCCTGAGTCTTACATTGTGAAGAtccttttctaaaattt-acaCATAAGAGGATATAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAAATATACGTTTTAGATTAAATCTCTGATTGCcactcattttcttatttaactcataaaaataaaacacattggatggagggtgggagtagGAAGGAGATATACGTCTTTTAATTGCATGTCATTTTTTCATATCGAGACAGAACATATAGTATCCCTGGCTTTGGATCTACAGAAGGAAACACATTTTACTACCTGCTGTATGCCAGAGGTTCTTGAACACCTGGAGGGACTACTGCAGCACAGACTGCTGAGCCCTagtccagagtttctgattcatcagatccagggtggggcctgagaatttgcatttataAGAAGTTCCCAGGTGCTGCTAGAGCTGCTGGTCCAGAGACTACATGTTTGAAAACCACTCTTATATACTAACTGTAAATTGCAGAACTCTAG-AAAAAAGCTTAGTTTGGTCTGGGATAAGAAGCATACAGGTTATGGAACAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTTACAAGCAATACACGGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATTGAGTGAGAAATTCAGTTTCACTCACAGGGCTTAGAGAGGCCAGGTGATT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              3897656 1286 +  24206276 gtgtgctgacacacccagctaatttttaaaactttttgtagagctgtgaactcactatgctgtccagactggtcttgaactcctgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattac-ggcatgaactagtgctcccggccGAGAGTTTACTTTCGATTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGGGCTAATGGTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATTGAACAGATGGAACTGTTTAGGTCTGCATCTTTGCAACTATACAAAATGT---------GAGTCTGCTTTATAGCCATTGAAAAGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGGCTAGAGTATTTTGGCTTAATTCTATT------GGAAGATGAAGGTG-AAAAAAATTCAAAACTTAAATTTCGTGTTGAATGCAATTTGAAAATATAACCAATGATTCCAGTTTTCTTCTCCAGTAATTTTGGACATTCTGATCTACTTGGTGTTTTATTACAGAACTCCTAGTATGCCTGAGTCTTACATTGTGAAGATCCTTTTCTAAAATTT-ACACATAAGAGGATATAAATGATATCGGATGAGATCGGGCTGGATGAGAACTGATACCTGTAAATATACGTTTTAGATTAAATCTCTGATTGCCACTCATTTTCTTATTTAACTCATAAAAATAAAACACATTGGATGGAGGGTGGGAGTAGGAAGGAGATATATGTCTTTTAATTGCATGTCATTTTTTCATATCGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAATACATTTTACTACGTGCTGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagattgctgagccctagtccagagtttctgattcatcaggtccagggtggggcctgagaatttgcatttataagaagttcccaggtgctgctagagctgctggtccagagactacatgtttgaaaaccactCTTATACACTAACTGTAAATTGCAGAACTCTAG-AAAAAAGCTTAGTTTGGTCTGGGATAAGAAGCATACAGGTTATGGAGCAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTTACAAGCAATACACGGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATTGAGTGAGAAATTTAGTTTCATTCACAGGGCTTAGAGAGGCCAGGTGATT
i chlSab2.chr29             C 0 N 0
e calJac3.chr10             18229080  542 + 132174527 I
e canFam3.chr30              1743556    0 -  40214260 I

a score=596929.000000
s hg38.chr15_KI270850v1_alt    307892 390 +    430880 CTAGAA----------------------------------------------------------------------------------AAAT------GGGCCTTGTATTTCTCTTAAACCAGTAAAGAGCTTTAAGTGGTTATTAAATTGAAAGCTTTGTGTTCTTACTTAttttgtatttt-----attttatttc---------------ttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgtgagcttggctcactgcaacctccatctcctgggttccagtgattctcctgcctcagcctcccaaatagctgggattacaggcacccgcaaccacgcctggctagtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcgaactcctgacctc-aggcaatccacccacctcggcctcccaaagtgatggcattacaggcgtgagccaccgcacccggc
s panTro4.chr15              80090391 390 +  99548318 CTAGAA----------------------------------------------------------------------------------AAAT------GGGCCTTGTATTTCTCTTAAACCAGTAAAGAGCTTTAAGTGGTTATTAAATTGAAAGCTTTGTGTTCTTACttattttgtatttt-----attttatttc---------------ttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgtgagcttggctcactgcaacctccatctcctgggctccagtgattctcctgcctcagcctcccaaatagctgggattacaggcacccgcaaccacgcctggctagtttttctatttttagtagagacagggtttcttcatgttggccaggctggtctcgaactcctgacctc-aggcaatccacccacctcggcctcccaaagtgatggcattacaggcgtgagccaccgcacccggc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81673448 390 +  99152023 CTAGAA----------------------------------------------------------------------------------AAAT------GGGCCTTGTATTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAACTGGAAGCTTTGTGTTCTTACttattttgtatctt-----attttatttc---------------ttttgggatggagtctttctctgtcacccaggctggagtgcagtggcatgagcttggctcactgcaacctccatctcctgggtttaagtgattctcctgcctcagcctcccaaatagctgggattacaggcacccaccaccatgcctggctagtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcaaactcctgacctc-aggcgatccacccacctcggcctcccaaagtgatggcattacgggcatgagccactgcacccggc
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19269755 405 - 121039945 CTATTA----------------------------------------------------------------------------------AAAT------GGGCCTTGTATTTCTCTTAAACCAGTAAAGAGCTTTAAGTGGTTATTAAATTGAAAGCTTTGTGTTCTTAGTTATTTTGTATTTT-----Attttattttatttgttttgttttgttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgtgagcttggctcactgcaacctccgtctcctgggttcaagtgattctcccgcctcagcctcccaaatagctgggattacaggtacccaccaccacgcctggctagttttcgtatttttagtagagacagggtttcttcatgttggccaggctggtctcaaactcctgacctc-aggtgatccaaccacctcggcctcccaaagtgacggcattataggcatgagccaccacacccggc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108385058 390 - 171882078 CTAGAA----------------------------------------------------------------------------------TACT------GGGACTTGTATTTCTCTTAAACAAGTAGAGAGTTTTAAGTGCTTATTAAATTGAAAGCTTTGTGTTCTTCCttattttgtgtttt-----attttatttc---------------ttttgagatggagtcttgctctgttgcccaggctgaagtgcaggggcgtgagcttggctcactgcaacctccgtctcctgggttcaggtaattcttctgcctcagccgaccaaatagctgggattacaggcacccaccaccacgcctggctagtttttgtatttttagtacagacagggtttcatcatgttggccatgttggtcttgaactcctgacctc-aggcgatccacccacctcggcctcccaaagtgatggcattacaggtgtgaaccactgcacccggc
i macFas5.chr7              N 0 C 0
s papAnu2.chr7               59717250 464 + 162156779 CTAGAAAAATAGGATTTAGTCATTAACCTCATGAGAGTAGGAGTTACTTATGTCCTTTTCCTCTCCCGCATCACTTAACATTTAGCCTTACTTTACAAGGggcttgtatttattttaaactgataaaggGCTTTGAGTGCTTATTAAATGGAAAgcattgtg----tatttatttaatg--------------attta---------------tttagagactgagtcttattctgttgctcaggctgaaatgcagtggcacaattttggctcactgcaacctccacctccctggttcaagcgattcccctgcctcaggctcccaagtgactgggattacaggtgtctgccaccatgcccagctagtttttgtatttttagtagagacagggtttcatgatgttggcca-gctggtcttgaactcctgagctc-aggtgatctacccgcctcagcctcccaaagtgctgggattgtaggcaatAACCATCAGGCCTGGC
i papAnu2.chr7              C 0 I 3476
s chlSab2.chr29              21075958 396 -  24206276 CTAGAA----------------------------------------------------------------------------------TACT------GGGACTTGTATTTCTCTTAAACAACTAGAGAGTTTTAAGTGTTTATTAAATTGAAAGCTTTGTGTTCTTACTTAttttgtgttttatttaattttatttc---------------ttttgagatggagtcttgctctgttgccgaggctgaagtgcaggggcgtgagcttggctcactgcaacctccgtctcctgggttcaggtaattctcctgcctcagccgaccgaatagctgggattacaggcacccaccaccacgcctggctagtttttgtatttttggtacagacagggtttcatcatgttggccaggttggtcttgaactcctgacctcaaggcgatccacccacctcggcctcccaaagtgatggcattacaggcatgaaccaccacacccggc
i chlSab2.chr29             N 0 C 0
e calJac3.chr10              18229080 542 + 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I

a score=475048.000000
s hg38.chr15_KI270850v1_alt    308282 398 +    430880 cCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTG-TTTTTAAAAGAAATCTTAACAATAATGTAGGAGAATAAGACAAACATTTTTCCAAAAAAGAGAAATTGTTGTGATTATTTTGTCTTATTGGAATGTCGGATACTATAGTCGGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTAATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATATAGGCC-AAAATCACAGACTTTGCACAGAAGCTGCATAATGAAGACAGCTCTGGAGGAacacatagatacacacacacagacacac----aTATATATAAAGTATATACACATATATTTTTTAAAGTTTATTTTTTACAGTTT
s panTro4.chr15              80090781 398 +  99548318 cCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTG-TTTTTAAAAGAAATCTTAACAATAATGTAGGAGAATAAGACAAACATTTTTCCAAAAAAGAGAAATTGTTGTGATTATTTTGTCTTATTGGAATGTTGGATACTATAGTCGGCTTCCTTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTAATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATATAGGCC-AAAATCACAGACTTTGCACAGAAGCTGCATAATGAAGACAGCTCTGGAGGAacacatagatacacacacacagacacac----atatatataaagtatatacacatataTTTTTTAAAGTTTATTTTTTACAGTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81673838 400 +  99152023 cCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTG-TTTTTAAAAGAAATCTTAACAATAATGTAGGAGAATAAGACAAATATTTTTCCAAATAAGAGAAATCATTGTGCTTATTTTGTCTTACTGGAATGTTGGATACTATAGTCGGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTAATACTGGTAATTCTTGTGCTCCATTTGAAGATGAAAAATATAGGCCAAAAATCATAGACTTTGCACAGAAGCTGGACAATGAAGACAGCTCTGGAGGAacacatagatacacacacacagacacacacatatatatataaagtatacacacata---TTTTTAAAGTTTATTTTTTACAGTTT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19270160 396 - 121039945 cCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGGTTCTTG-TTTTTTAAAAAAATCTTAACAATAATGTAGAAGAATAAGACAAACATTTTTCCAAAAA--AGAAATCATTGTGATTATTTTGTCCTATTGGAATGTTGGATACTATAGTCGGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTAATACTGGTAATTCTTGTGCTCCATTTGAAGATGAAAAATACAGGTG-AAAATCATAGACTTTGCATAGAAGCTGGATAATGAAAACAGCTCTGGAAGAacacatagatacacacacacagacacac----aTATATATGAAGTATACACACATATATTTTTTAAAGTTTACTTTTTACAGTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108385448 395 - 171882078 cCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTATCA-TTAAAAAAAAAAATCTT---CGTAATGTAGGAGAATAAGAGAAATGTTCTTCCAAAAAAGAGAAATCACTGTGATTATTTTGTCTTATTGGAATGTTGGATACTATAGTCTACTTCCTTAATCATCAAGCATGCTATGAATTTTCCATTTTTATAGGATCTGTATCTCAGTTAAGGTGATACTGGTAATTCTTATACTCCATTTGAAGATGAAAAATATAGTCC-AAAATCATAGACTTTGCATAGAAGCTGGATAATGAAGACAGCTCTGGAGGAACGCATAGATacacacacacagacacac----aTATATATAAAGTATACACATGTATACATTTTTAAGTTTATTTTTTACAGTTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076354 394 -  24206276 cCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTATCATTTAAAAAAAAAAATCTT---CGTAATGTAGGAGAATAAGAGAAACGTTCTTCCAAAAAAGAGAAATCATTGTGATTATTTTGTCTTATTGGAATGGTGGATACTACAGTCTACTTCATTAATCATCAAGCATGCTATGAATTTTCCATTTTTATAGGATCTGTATCTCAGTGAAGGTGATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATATAGGCC-AAACTCATAGACTTTGCATAGACGCTGGATAATGAAGACAGCTCTGGAGGAACGCATAGAT--ACACACACAGACACAC----ATATATATAAAGTATACACATGTATACATTTTTAAGTTTAGTTTTTACAGTTT
i chlSab2.chr29             C 0 C 0
e calJac3.chr10              18229080 542 + 132174527 I
e canFam3.chr30               1743556   0 -  40214260 I
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=67556.000000
s hg38.chr15_KI270850v1_alt    308680 48 +    430880 TAAAAGTTTTAAAGCAAAACCCAGCCCTTCCCCTCTCCCAGAGTGGGC
s panTro4.chr15              80091179 48 +  99548318 TAAAAGTTTTAAAGCAACACCCAGCCCTTCCCCTCTCCCAGAGTGGGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81674238 46 +  99152023 TAAAGCTTTTAAAGCAAAAGCCAGCCCCTCCCCTCTCT--GAGTGGGC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19270556 48 - 121039945 TAAAGCTTTTAAAGCAAAAGCCATCCCCTCCCCTCTTCCAGAGTGGGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108385843 48 - 171882078 TAAAGCTTTTAAAGCAAAAGCCAGACCCTTGCCTCTCCCAGAGTGGGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076748 48 -  24206276 TAAAGCTTTTAAAGCAAAAGCCAGACCCTTGCCTCTCCCAGAGTGGGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114301920 48 - 132174527 TAAAAGTTCAAAGGCAAAAGTCAGCCCTTCCGCTCTCCCCGAGTGGGT
i calJac3.chr10             I 61784 C 0
e canFam3.chr30               1743556  0 -  40214260 I
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=1169739.000000
s hg38.chr15_KI270850v1_alt    308728 690 +    430880 GGCCCCTCCCCTTTCTCTGAGT-GGGCGGGGACAGCGGTTGCATGGGCAGCTTTCCTTATGATGCCACAGGTCCCTCTGGACATGCTGCTGCCTGGCCACGCCTCCTTTCCCTTTCATC-----------------------------------------------------------------------------------------------TTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCTGCGTTCCATTGGTGCCCTGGTTACGCCACCTGTGGCTCAGTTGCACAGCTGCCTGGTAGGTGACTGGAGGCATTGAGCAGTGTGCTCACTGGTATTTCGCTGATGTGGCCCCAACCCCGCCTCCCTCCCCACCCC------------------------GCGATGTCAGAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACACACCAGGTCATGGC-CCCCAACCCAGCCACAGATCCCCTCCGATGACAAGACCGGTGCCAGAGTCCATACCACTCCTGAGGCATACCAGATGGGGC---CCCCCAACCCCAGCCCCTCTGGG-CTCCCCCAACCAAAGCCTAGTCAGTCAGCCCCACCCCTTCAGCAAGCAGCCCAGTACCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTCCCTGCTCCATAATCAGCCCTCACCTCCTGCCACCCCAAGCCCAACCTCCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCT-GGTCCCCCAGCCCCAGGCC
s panTro4.chr15              80091227 689 +  99548318 GGCCCCTCCCCTTTCTCTGAGT-GGGCGGGGACAGCGGTTGCCTGGGCAGCTTTCCTTATGATGCCACAGGTCCCTCTGGACATGCTGCTGCCTGGCCACGCCTCCTTTCCCTTTCATC-----------------------------------------------------------------------------------------------TTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCTGCGTTCCATTGGTGCCCTGGTTACGCCACCTGTGGCTCAGTTGCACAGCTGCCTGGTAGGTGACTGGAGGCATTGAGCA--GCGCTCACTGGTATTTCGCTGATGTGGCCCCAACCCCGCCTCCCTCCCCACCCC------------------------GCGATGTCAGAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACACACCAGGTCATGGC-CCCCAACCCAGCCACAGATCCCCTCCGATGACAAGACCGGTGCCAGAGTCCATACCACTCCTGAGGCATACCAGACGGGGC---CCCCCAACCCCAGCCCCTCTGGG-CTCCCCCAACCAAAGCCTAGTCAGTCAGCCCCACCCCTTCAGCAAGCAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTCCCTGCTCCATAATCAGCCCTCACCTCCTGCCACCCCAAGCCCAACCTCCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTCCCCCAGCCCCAGGCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81674284 784 +  99152023 GGCCCCTCCCCTCTCTCTGAGT-GGGCGGGGCCAGCGGTTGCATGGGCAGCTTTCCTTGTGAAGCCACAGGTCCCTCTGGACATGCTGCTGCTTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATAAAGGCACGCCCCTATTCTGCATTCTAGTGGNNNNNNNNNNGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCTTATTCTGCATTATAGTGGGGCCCTGGTTACGCCTCCTGTGGCTGAGTCGCACAGCTGCCTGGTAGGTGACTGGAGGCATTCAGCA--GTGCTCACTGGGATTTTGCTGATGTGGCCCCAACCCCGCCTCCCTCCCCACCCC------------------------ACGATGTCAGAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAATGCACTAGGTCATGGC-CCCCAACCCAGCCACAGATCCCCTCTGATGATAAGACCGGTGTCAGAGTCCATAGCACTCCTGAGGCATACCAGACTGGGG---CCCCCAACACCAGTGCCCCTGGG-CTCCCCCGACCAAAGTCTTGTCAGTCAGCCCCACCCCTTCAGCAAGGAGCCCAGTCCCTGCCCTTGCCAGTC---ACCCCAGGGTGACTTTGGGCGGCTGACTCCTTGGGCTCCCTGCTTCATACTCGGCCCTCACCTCCTGCTGCCCCAAGCCCAACCTCCCTGGGCTCTTTGGACTTGTGTCTCCTAGGACCTGGGTCTCCCAGCCCCAGGCC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19270604 688 - 121039945 GGCCCCTCCCC-CTCTCTGAGT-GGGCGGGGACAGCGGTTGCATGGGCCACTTTCCTTATGATGCCACAGGTCCCTCTGTACATGCTGCTGCCTGGCCACGCCTCCTTTCCCTTTCATC-----------------------------------------------------------------------------------------------TTTGTCACTGACCAATGGGCTTGGAGCATTAAGGCCACACCCCTATTCTGCATTCTAGTGGCGCCTTGGTTAAGCCTCCTGTGGCTCAGTCACACAGCTGCCTGGTAGGTGACTGGAGGCATTCAGCA--GTGCTCACTGGGATTTCACTGAAGTGGCCCCAACCCTGCCCCACTCCGCACCCC------------------------ACGATGTCAGGAAAAGCACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACGCCCCAGGTCATGGC-CCCCAACCCAGCCACAGACGCCCTCTGATGACAAGACCGGTGCCAGAGTCCATACCAGTCCTGAGGCATACCAGACTGGGC---CCCCCAACCCCAGCGCCTCTGGG-CTCCCCTGACCAAAGTCTTGTCAGTCAGCCCCACCCCTTCAGCAAGGAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAAGGTGACTTTGGGCAGGTGATTCCTGGGGCTCCCTGCTCCATACTCGGCCCTCACCTCCTATTGCCCCAAGCCCAACCTCCCTGGGCTCTCTGGGCTTGCGTCTCCCAGGACCTGGATCTCCCAGCCCCAGGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108385891 694 - 171882078 GGCCCCTCCCCTCCTTCTGAGTAGAGCGGGGAGAGCGGTTGAATGGGCAGCTTTCCTTGTGATGCCACAGGTCCCTCTGGACACCCTGCCGCCTGGCCACGCTTCCTTTCCCTTTCATC-----------------------------------------------------------------------------------------------TTTCTCACTGACCAATGGGCTTGCAGCATTAAGGCCACGCCCCTCTTCTGAATTCTAGTGGGGCCCTGGTTACGCCTCCTCTGGCTCAGTTGCACAGCGGCCTGGTAGGTGACTGGAAGCATTCAGCC--GTGCTCACTGGGATTTCGCTGATGTGACCCCAACCCCGCCTCCCTCCACACCCC------------------------ATGATGTCAGAAAAAACACGACAGGGAAAATTCACCGCAGCCAAGAAAAAGGTAAAATGCACCAGGTCATAAC-CCCCAACCCAACCACAGATCCTCTCCGATGAAAAGACCATTGCCAGAGCCCATACTATTCCTCAGGCATACCGGAATGGGA---CCCCCAACACCAGTGACTCTGGGCTCCCCCCCACCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCAAGCAGCCCAATCCCTGCCCTTGCCGATCTTTACCCCAGGGTGACTTTGGGCGGGTGACACCGTGGGCACCCCGCTCCATACTCGGCCCTCACCTCCTGCTGCCCCAAGCCTGACCTTCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTACCCCAGCCCCAGGCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076796 693 -  24206276 GGCCCCTCCCCTCCTTCTGAGTAGAGCGGAGAAAGTGGTTGCATGGGCAGCTTTCCTTGTGATGCCACAGGTCCCTCTGGACATGCTGCCGCCTGGCCATGCTTCCTTTCCCTTTCATC-----------------------------------------------------------------------------------------------TTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTCTTCTGAGTTCTAGTGGGGCCCTAGTTACGCCTCCTCTGGCTCAGTTGCACAGCGGCCTGGTAGGTGACTGGAGGCATTCAGCC--GTGCTCACTGGGATTTCGCTGATGTGACCCCAACCCCGCCTCCCTCCGCACCCC------------------------ATGATGTCAGAAAAAACACGACAGGGAAAATTCACCACAGCCAAGAAAAAGGTAAAATGCACCAGGTCATAGC-CCCCAACCCAGCCACAGATCCTCTCCGACGACAAGACCATTGCCAGAGCCCATACTATTTCTCAGGCATACCGGAATGGGA---CCCCCAACACCAGCGACTCTGGG-TTACCCCCACCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCAAGCAGCCGAATCCCTGCCCTTGCCGATCTTTACCCCAAGGTGACTTTGGGTTGGTGACTCCTGGGGCTCCCCGCTCCATACTCGGCCCTCACCTCCTGCTGCCCCAAGCCTGACCTTCCTGGACTCTTTGTGCTTGTGTCTCCCAGGACCTGGGTACCCCAGCCCCAGGCC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114301968 676 - 132174527 GGCCCCACCCC--TCTCAGAGT-GGGCGGGGACAGGAGTTGCAGGGGCAGCTTTCCTTGGGATGCCACAGGTCTCTCTGGA------GCTGCCTAGCCACGCCTCCTTT-CCTTTCATC-----------------------------------------------------------------------------------------------TTTCTCA-TGACCAATGGGATTGGAGCATGAAGGCCACGCCCCTGTTCTACATTCTAGTGTGGCCCTGGTTACGCCTCCTCTGTCTCAGACACACAGCTGCCTGGTAGAGGAGTGGAGCTGCTTACCA--GTGCTCCTTTGAATTGTGCTGATGTGGccccaaccccacctccctccccaaccccacctccctcccccacccACCATGGTGATGTCAGAAGAAAATCGCAAGATGAAATTAGCCTCGGCTAGGAAAAAGGTAACATGCA-------------------------CACAGATCCCCTCCGACGGCAAGACCGCTGCCAGCGTCCATAACACTTCTGAGACACACCAGACTGGGCGGGCCCCTAAACCCGGTGCCTCTGGG-CTCTCCCTACCAACGTCTTTTCAGTGAGTTCCACCCCTTCAGCAAGGAGCCCAGCCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGATGTGTAACTCCTGAGGCTCCCCATTCCCTGCTTGGGCCTCACCTTTTCCTGCTCCATGTCTGACCTCCCTGGGCTCTGTGGGCTCATGTCTCTAAGGACCTGGGTCTCCCAGC------CC
i calJac3.chr10             C 0 C 0
s canFam3.chr9               55234593 628 +  61074082 GGTCCCGCCCCCGCCCCGAAGT-GGGCGGGGCCAGAGGCTGCGCGCGCAGCTTTCATTGTCACTCCACCTGCTC----------GCGGCAACCTGACCACGCCCATTCCCCCGTTCATC-----------------------------------------------------------------------------------------------TTTCTCACCAGCCAATAGAATTGGAGCATTGAGGCCACGCCCACCAGCTGCTACCTAGAAACTCTAGGGTCCCTCCCTTTCTGGCTCAGTCGCACACCGGCGCGGTGACTGCCGGAAGTGATGCCGCG--GTGGTTGCCGGGATCGCGGTGATGTGGCCAC-CCCCCTTACCCCTCCCCGTCCC------------------------GGGATGTCGGAAGAAACCCGACAGAGCAAATTGGCTGCGGCCAAGAAAAAGGTAAAACGTGCCGGGTCGCGGCTCCCTGACCCAGCCAAAGG-CCCCTCGGACGGCCGGGCCGTGGCCAGAATCTTTGCTGCCCCTGAGGCACACGGGGCT-AGC---CCCGTGACGCC-----CCTTGGC-GCCCCCCACCCCAAGTCGTCTCAGCCAGTcccgcccc-----ccggctgcccagcccccgccctcgcccgcc---gccccc-ggTGACTTTGGGCTGGTGACTCCCCGGGCTCCCTGCTCCAGGTTTGGCCCTAGCCTTCTGCCACCCAGAAGCGG--------------------------------AGGACCTGGGCTCTCCAGGCC------
i canFam3.chr9              T 21040 T 116
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=78687.000000
s hg38.chr15_KI270850v1_alt    309418 40 +    430880 CTGCCCTCACCAGTCATCCCTGGGTGGCTTTGGGCTGGTG
s panTro4.chr15              80091916 40 +  99548318 CTGCCCTCACCAGTCATCCCTGGGTGGCTTTGGGCTGGTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81675068 40 +  99152023 CCGCCCTCACCAGTCATCCCTGGGTGACTTTAGGCTGGTG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19271292 40 - 121039945 CCACCCTTGCCAGTCATCCCTGGGTGACTTTGGGCTAGTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108386585 40 - 171882078 CCACCGTTGCCAGTCATCCTTGGGTGACTTTTGGCTGGTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21077489 40 -  24206276 CCACCGTCGCCAGTCGTCCTTGGGTGACTTTTGACTGGTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114302644 40 - 132174527 CCGCCCTCACCAATCATTTCTGGGTGACTTTGGGCTGGTG
i calJac3.chr10             C 0 C 0
s canFam3.chr9               55235105 39 +  61074082 ccgccctcgcccgccgccccc-ggTGACTTTGGGCTGGTG
i canFam3.chr9              T 116 I 77
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=1677740.000000
s hg38.chr15_KI270850v1_alt    309458 913 +    430880 ACTCCCGGGGCTACCTACTGCAGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCGACCTCCCTAGGCTTCTTGGGCTGGCGTCTCTGAGGACCTGGGTCGAAACCGTGTGTTTCCCTCCCCCATCGTGGAGCAGCGACTCGGGCATCGCGCTGATGTGGTCCCCT---CCCCTGGGAGGAGTGGAATGCAATGATGTCACAGTGCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGAGACTATGGGACCTAGGAGCAAGAGGTTTCAGGCTGCCTTACTCC---CTCAACATAGAC--ATTGACAGTGGGAAAAATCCTACACTTCCCCTGTGAGCTCAAAATGTTCACAGTATCTCTGGGTGGCAAT-GGGAGAATGGG-----TTTGGTTTGG-TTTTTTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACA-T-TTTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TATCGTCTCAACCTGGGGTACTTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTTGAGA----AAAT-----------GCATTAATGTACTTAGGGATGACAGACACATAGGTTTCCAAGCGTATACCAGACTTCGCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGATAAATTCCCAGATTTAATAGAAAAG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTACGCTTCTT
s panTro4.chr15              80091956 913 +  99548318 ACTCCCGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCGACCTCCCTAGGCTTCTTGGGCTGGCGTCTCTGGGGACCTGGGTCGAAACCGTGTGTTTCCCTCCCCCATCGTGGAGCAGCGACTCTGGCATCGCGCTGATGTGGTCCCCT---CCCCTGGGAGGAGTGGAATGCAATGATGTCACAGTGCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGATCGTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGAGACTATGGGACCTAGGAGCAAGAGGTTTCAGGATGCCTTACTCC---CTTCACATAGAC--ATTGACAGTGGGAAAAG-CCTACACTTCCCCTGTGAGCTCAAAATGTTCACAGTATCTCTGGGTGGCAAT-GGGAGAATGGG-----TTTGGTTTGGTTTTTTTCCCAGGCTTCTACTTTCCAGAGAGACTTTCACA-T-TTTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TATCGTCTCAACCTGGGGTACTTTGAGTgccacaggataaatgtgggacatctttctgaagcatcgttttcccttgaTTCTCTTGAGA----AAAT-----------GCATTAATGTACTTAGGGATGACAGACACATAGGTTTCCAAGCGTATACCAGACTTCGCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGATAAATTCCCGGATTTAATAGAAAAG--------CTGCCTTCTGCCATGAGGACACATTGATACGAAAGTGTGAGAGGTACTGGTGCGCTTCTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81675108 913 +  99152023 ACTCCTGGGGCTCCCTATTGCAGACTCTGCCCTCTCCTTCCACTGCCCTAAGCTCGACCTCCCTGAGCTTCTTGGGCTGGCATCTCCGAGAACCTGGGTCAAAACCCTGTGTTTCCCTCCCACATCGTGGAGCAGCAACTCGGGCATCATGCTGATGTGGTCCTCT--CCCCCTTGGAGGAGTGGAATGTAGTGATGTCACAGTCCCCCTAGGAACTGTCATTACTGCTGCAAG-ACTGGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCGGCTGGAAGGGGAGTGGGGACTATGGGACCTAGGAGCAAGAGGTTTCAGGCTGCCTTACTCC---CTTAACAATGTCTAATTGACAGTGGGGAAAG-CCTACACGTCCCCTGTGAGCTCAAAACGTTGACAGTATCTCTGGGTGGCAAT-GGGAGAATGGG-----TTTGGTTTGG-TTTTCTCCCAGACTTCTACTTTCCAGAGAGACTTTAACA-T-TTTTTTCTGAGTTCTCCAC--------------------GCTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTACCCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TGTCATCTCAACCTGGGGTACTTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttCCCCTGATTCTCTTGAGA----AAAA-----------GCATTAATGTACTTAGGGATGACAGACACATGGGTTTCCAAGCATATACCAGACTTCTCTCTGAAATGAGACTTGGTTTGTCCTCTT--TGATAAATTCCCAGATTTAACAGAAAAG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCACTTCTC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19271332 896 - 121039945 ACTCCTCGGGCTCCCTACTGCAGACTCTGCC-------------GCCCCAAGCTTGACCTCCCTGGGCTTCTTGGGCTGACGTCTCCGAGGACCTGGATCAAAACCCTGTGTTTCCCTCCCCCATTGTGGAGCGGTTACTCGGGCATCGTGCTGATGTGGTCCCCT---CCCCTGGGAGGAGTGGAATGTAGTGATGTCACAGTCCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGGTCTTACAACCCAGTCCCCTAAGTTTTCTCACCACATTTCTGGTTCCTCTGGTTGCAGCATAAATTTCCAGCTGGAAGGGGAGTGGGGACTATGGGGCCTAGAAGCAAGAGGTCTCAGGCTGCCTTACTCC---CTTCACATAGAC--GTTGACAGTGGGAAAAG-CCTCCACTTCCCCTGTGAGCTGAAAACATTGACAGTATCTCTGGGTGGCAAT-GGGAGAATGGG-----TTTGG-TTGG-TTTTCTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACATT-TTTTTTCTGAGTTCTCCAC--------------------GCTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAGGTGAGATTTGCCCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGCT-TGAATCTTCCTCA---TATCATCTCAACCTGGGGTACCTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTTGAGA----AAAA-----------TCATTAACGTACTTAGAGATGACAGACACATAGGTTTCCAAGCGTATACCAGACTTCTCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGATAAATTCCCAGATTTAACAGAAAAG--------CTGCCTTCTGCCATGAGGGCACATTGATATGAAAGTGTGAGAGGTACTGGTGCACTT---
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108386625 912 - 171882078 ATTCCCGGGGCTCCCTACTGCGGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCCACCTCCCTGGGCTCCTTCGGCTGGTGTCTCCAAGGACCTGGGTCCGAACCCTGTGTTTCCCTCCCCCATCATGGAGTGGCGACTCGGGCATCACGCTGATGTGGTCCCCT---CCACTGGGAGGAATGGAATGTAGTGATGTCACAGTCCTCCTAGGAACTGCCATTACTGCTGTAAG-ACCAGCCGTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCCGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATGGGGACTATGGGACCCAGGAGCAAGAGGTTTCAGGCTGCCTTACTCC---CTTCACATAGAC--ATTGACAGTGGGAAAAG-CCTCCACTTCCCCTGTGTGCTCAAAACGTTGACAGTATCTCTGGGTGGCCAT-GGGAGAACGGG-----TTGGGTTTGG-TTTTCTCCCAGGCTTCTACTTTGCAGAGAGACTTTAACA-T-TCTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CCGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCAGTGGAATAGATCTTGGGAAGCTGAACTAGATAGCT-TGACTCTTCCTCA---TATCATCTCAACCTGGGGTACTTTGAGTgccacaggatgaatgtgggacatctttctgaagcatcagtttcccttgaTTCTCTTCAGA----TCAA-----------ACATTAATGTCCTTAGGGATGACAGTCACATAGGTTTCTAAGCATATACCAGACTTCTCTCTGAAATCAGGCTTGGGTTGTCCTCTTTCTGAAAAATTCCCAGATTTAACAGAAAAG--------CTGCCTTCTGTCATGAGGACACATTTATATGAAAGTGTGAGAGGTACTGGTGCACTTCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21077529 912 -  24206276 ATTCCTGGGGCTCCCTACTGCGGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCGACCTCCCTGGGCTCCTTCAGCTGGTGTCTCCAAGGACCTGGGTCCGAACCCTGTGTTTCCCTCCCCCATCATGGATTGGTGACTTGGGCATCACGCCGATGTGATCCCTT---GCACTGGGAGGAATGGAATGTAGTGATGTCACAGTCCCCCTAGGAACTGTCATTACTGCTGCAAG-ACTAGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATAGGGACTATGGGACCCAGGAGCAAGAGGTTTCAGGCCGCCTTACTCC---CTTCACATAGAC--ATTGACAGTGGGAAAAG-CCTGCACTTCCCCTGTGAGCTCAAAACGTTGACAGTATCTCTGGGTGGCCAT-GGGAGAACGGG-----TTTGGTTTGG-TTTTCTCCCAGGCTTCTACTTTGCAGAGAGACCTTAACA-T-TCTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTAGCTCATCTTCAGTGGAGTAGATCTTGGGAAGCTGAACTAGATAGCT-TGACTCCTCCTCA---TATCATCTCAACCTGGGGTACTTTGAGTgccacaggatgaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTTCAGA----TAAA-----------ACATTAATGTCCTTAGGGATGACAGTCACATAGGTTTCCAAGCATATACCAGACTTCTCCCTGAAATTAGGCTTGAGTTGTCCTCTTTCTGAAAAATTCCCAGATTTAACAGAAAAG--------CTTCCTTCTGCCATGAGGACACATTGACATGAAAGTGTGAGAGGTACTGGTGCACTTCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114302684 923 - 132174527 ACTCCTGGGAATCCCTGCTGCAGACTCTGCCCTCCCCTCCTACT-CCCCCAGCACAACCTCCCAGTGCTCTTTGGGCTGGCATCTCCAAGGACCTGAATCCCAGCCATGCGTCCCCCTCCCCCATCGTGGAGCAGTGACTCAGGCATGTCCTTGATGTGGTCCCCTCCCCCACCAGGAGGAGTGGAATGTAGTGATGACACCATCCCCCTAGGAGCCATCATTCCTGCTACAAA-ACCAGCCTTTGATCTTACCGCCCAGTCCCCTAAGCATTCTCATAGCATT-----------TGGTCCCAGCACAAATTTCCAGCTGGTTGGGGAATGTGGACTATGGGACCTAGGAGCGAGAGGTTTCAGGCTGCC-CACTCC---TTTAACATAGAC--CTTGACAGTGTGAAAAG-CCTACACTTCCCTCGTGAGCTCAAAACATTGACAGTGTCTCTGGGTGGCAAT-GGGAGAATGGG-----TTTGGTTTGG-TTTTCTCTCAGGCTTCTACTCTCCAGAGAGACTTTGACG-T-TACTTTCTGAGTTCTCCACCTCATCTTCAAATTCTCCATGGTTTTGGGACCAGA--------------CTGCCCTTCAGTCACTGGCCTCTGGAGTGAGATTTGCTCATCCTCTGTGGAACAGATCTTGGGAAATTGAAACTGACAGCT-TGAATCTTCCTCA---AATCATTGCAACTCAGGCTACTTTGAATgccacgggataaacatgggacatctttctgaagcatcagtttcccttgagtctctagagagagcaaaa-----------gcattaATGTACTTAGGGATGACAGTCACATAGGTTTCTAAGAGTATACCAGACCTCTCTC---AATAAGACTTGGGTTGTCGTACTTCTGATGAATTCCCAGATTTAACAGAAAGG--------CTGCCTTCTGCCATGAGGACACATTGATATAAAAGTGTGAGAGGTACTGGTGCTCttctt
i calJac3.chr10             C 0 I 299
s canFam3.chr9               55235221 863 +  61074082 GGTCCCGGTG--------------------------------------------------------------------------TCCAGGGACCTCGGTCCCAGCCCTGCTTTCCCCTCCCCCACCGCGGAGCGGCGACTCGGGCGT----------------------TGGTAGGGAGGAGGGGAATGTAGTTACGTCACAATCCCCCTCGGAACTGTCATTAGCGCCAGGAGCCCCGGTGTTTGGTCTTACTACCCAGTCTCCC-AGTGTTTTCATACCCTTTCCGGTTTCTCCGGTCGCGGCGCAAATTTCCAGCTTGAAGGGGACTGGGGACTATGGGACCTAGGTGGGAGAGGTTTCAGGAGCCCTTACTCTAGACTGTACCCCATC--CTT-----------AAA-CATTGACTACACCAGTGATCATGGAACATTGGTAACACCTT--GGTGACAATGGGGAGAGTGTGTTTTCTTTGGTATGG-TTTCCTTTTAGGTTTCTACTGTCCAGAAAGACTTTCACA-TATTAAATCTGAATTCTCTACCTCACATTTTAATTCCTTATGATTCT-GGACCAGAGTCCCCCCCGCCTCCCCCCCATCAATCAGTGCTCTTTGGAGTGAGATCTGCTTATCCTCTGTGGAACTGATCTCTGGAACCTGAATTTCATAGGTGGGAATCTTCCCCAAATCATCATCTCAACATGGAGTGTTCTGAGGGCCACAGGAT-AATATAGAA-------CTGAAGCATCAATTGTGCTTGATTCTTTTGAGA----AAGAAAAATCCTTTTATAGTAATGTAC-TAGGGATGACATTTGTGTAGATTTGTAAGATTATGATAGACTTCTCTCTGAAATGGTGCTTGGATTGTCCTCTTTCTGTTAGGTTTCCACATTCACTAGGTGTGTGCCTTTACTGCCTTCTGCCATCAGGATACGTTGATATAAAAGTTTGATAAATACCAATGTGCAGCTT
i canFam3.chr9              I 77 C 0
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=16685.000000
s hg38.chr15_KI270850v1_alt    310371 14 +    430880 CACGCTAGCAGACC
s panTro4.chr15              80092869 14 +  99548318 CACGCTAGCAGACC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81676021 14 +  99152023 CACACTAACAGACG
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19272228 14 - 121039945 CACACTAACAGACG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108387537 14 - 171882078 CACACTAACGGACA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21078441 14 -  24206276 CACACTAACGGACA
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55236084  9 +  61074082 -----TAACAGATT
i canFam3.chr9              C 0 C 0
e calJac3.chr10             114303607 299 - 132174527 I
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=1156477.000000
s hg38.chr15_KI270850v1_alt    310385 645 +    430880 TGTGAGGATGTATGACTCTAAACCACACGGCCTACAGTTCCTGCCTGCTTAATGTTTACTTTTCTACCTCTGCCCCTGGTTTTGGTCCCTGGAAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAGGACTGAGTTTAAGTTCCAGTATTGCCT---TTTTTGATC--TTTCTT--TTTTTTTTTTCTATCCATGATATCAATCCCTCT---CAGTCACTAAGTGATTGTGACAACACCTTGTACAGTTGTTGGTGGCATTACATCAGATGGT--ATATAAGGGTATTTTGTCAAAACTGTAAAGGAGGATGTGGCTGTAGGGGCTGATCATTCTCATGAGTGTTACTGCTCTTCTTTCCCACAGTTAAAAGCATATTGGCAGAGGAAGAGCCCTGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGGGTCCTGGCGACAGGGG-GCCCAAGGGGCAGTAGAGGGTAATTGTTAAGATTGTAGATGGACTGTTGGGTACTGGTTAAGAATTCTGGATTTGAATCCTGCCTCTCCGTCTGCTAAGAAT--------TGATTAGGGattgattagcatatgat---
s panTro4.chr15              80092883 647 +  99548318 TGTGAGGATGTGTGACTCTAAACCACACGGCCTACAGCTCCTGCCTGCTTCATGTTTACTTTTCTACCTCTGCCCCTGGTTTTGGTCCCTCGCAGCTGCtga-ttcatggcaaaaccccagagcttggagtcagaggactgagtttaagttccagtattgcct---tttttgatc--tttctttcttttttttttctatccatgatatcaatccctct---cagtcactaagtgattgtgacaacaccttgtacagttgttggtggcattacatcagatggt--atataagggtattttgtcaaaactgtaaaggaggatgtggctgtaggggctgatcattCTCATGAGTGTTACTGCTCTTCTTCCCCACAGTTAAAAGCATATTGGCAGAGGAAGAGCCCTGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGGGTCCTAGGGACAGGGG-GTCCAAGGGGCAGTAGAGGGTAATTGTTAAGATTGTAGATGGACTGTTGGGtactggttaagaattctggatttgaatcctgcctctccgtctgctaaggat--------tgatttgggattgattagcatatgat---
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81676035 639 +  99152023 TGTGAGGATGTGTGACTCTAAACCACACAGCCTACAGTTCCTGCCTGCTTAATGTTTACTTTTCTTCCTCTGCCCCTGGTTCTGGTCCCTggcagctgctga-ttcatggcaaaaccccggagcttggagtcagaggactgagttcaagttccagtattgcct---ttt--------TTTTTT--TTTTTTTTTTGTATCCATGAGATCAATCCCTCT---CAGTCACTAAGTGATTGTGACAACaccttgtgcagctgctggtggcattaaatcagatggt--gtataagagtattttgtcaaaactgtaaagGAGGATGTGGCTATAGGGGCTGATAGTTCACATGAGTGTTACTGCTCTTTTTTCCCACAGTTAAAAGAATATTGGCACAGGAAGAGCCCTGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCGGACACAACCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTTTTGGTTGGCCAGGCTCCTGGGGACAGGAG-GCCCAAGGGGcagtagagggtaattgttaagattgtggatggactgttcggtactggttaagaattctgggcttgaatcctgcctctccatctgctgaggat--------tgattagggattgattaggatatgat---
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19272242 639 - 121039945 TGTGAGGATGTATGACTCTAAACCACACGGCCTACAGTTCCTGCCTGCTTAGTGTTTACTTTTCTACCTCTGCCCCTGGTTATGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCTCAGAGC-TGGAGTCAGAGGACTGAGTTTAACTTCCAGTATTGCCT---TTTT-------CTTTCT--TTTTTTTTTCCTACCCATGGTATCAATCTCTCT---CAGTCACTAAATGATTGTGACAACACCTTGTACAGTTGTTGGTGGCATTAAATCAGATGGT--GTATAAGAGTATTTTGTCAAAACTGTAAAGGAGGATGTGGCTGTAGGGGCTGATAGTTCTCATGAGTGTTACTGCTCTTTTTTCCCACAGTTAAAAGAATATTGGCAGAGAAAGAGCCCTGGCACTCCAGCAGGAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCTGACACAGCCACATCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGAGACAGGGG-TCCCAaggggcagtagagggtaattgttaagattgtggatggactgttgggtactggttaagaatcctgggtttgaatcctgcctctccgtctgctaaggat--------tgattagggattgattaggatatgat---
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108387551 639 - 171882078 TGTGAGGATGTATGACTCCAAGCGACACGGCATACAGTTCCTGCCTCCTTCATGTTTACTGTTCTAACTCCGCCCCTGGTTTTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGACGGAGCTTAAGTTCCAGTATTAACT---ATT--------TTGTTT--CTTTGTTTTTCTAGCGATAATATCAATCCCTCT---CAGTCACTTAAGGATTGTGACAACACCTTGTAGAGTTGGTGGTGGCATTAAATCAGATGGT--GTAGAAGAGTATTTGGTCAAAACTGTGAAGGAGGGTGTGGCTGTAGGGGCTGATAGTTCTCATGAGTGTCACTGCTCCTCTTTCCCACAGTTAAAAGAATATTGGCAGAGGAAGAGCCCTGGCGTTCCAGCAGAAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCTGACACCGCGGCTTCTGGTGGTTACCGCTCACCTGGGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGGGACAGGGG-ACCCAAGGGGCAGTAGAGGAGAATTGTTAAGATTGTGGATGGACTGTTGGGTACTGGTTAAGAATTCTGGGTTTGAATCCTGCCTCTCCATCCGCTAATGAT--------TGATTAGGGATTAATTAAGATATGAT---
i macFas5.chr7              C 0 M 1328
s chlSab2.chr29              21078455 633 -  24206276 TGTGAGGATGTATGACTCTAAACCGCACGGCATACGGTTCCTGCCTGCTTCATGTTTACCGTTCTAACTCCGCCCCTGGTTTTGGTCCCTGGAAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGACTGAGCTTAAGTTCCAGtatta-----------------ttatta--ttatttttTTCTATCCATGGTATCAATCCCTCT---CAGTCACTAAAGGATTGTGACAACACCTTGTACAGTTGGTGGCGGCATTAAATCAGATGGT--GTAGAAGAGTATTTTGTCAAAACTGTAGAGGAGGATGTGGCTGTAGGGGCTGATAGTTCTCATGAGTGTCACTGCTCTTCCTTCCCACAGTTAAAAGAATATTGGCAGAGGAAGAGCCCTGGCGTTCCAGCAGGAGCTAACAGGAAAAAGAAAATC---AATGGCAGTAGCCCTGACACCGCCGCTTCTGGTGGTTACCGCTCACCTGGGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGGGACAGGGG-ACCCAAGGGGcagtagaggataattgttaagattgtggatggactgttgggtactggttaagaattctgggtttgaatcctgcctctccatctgctaatgat--------tgattagggattaattaggatatgat---
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114303906 622 - 132174527 TGTGAGGCTTTATGATGCTAAACCACACGGCATACAGTTCCTGCCTACTTCATGTTGATTTTTCTACCTCTGCCTGTGGTTTTGGTCTCTGGCAGTTGCTGA-TTCGTGGCAAAACCCTAGAGCTTGGAGTCAGAGGAATGAGTTTAAGTTTTAGTATTACTT---TCTCTCTT---TTTTTT--CTTTTTTTTTTTTGTCATGACATCAATCCTGCT---CAGTCACTAAGTGAGTGTGACAACACAGTatagagttgttggtggcattaaatcagatggt--gtataacagtattttgtaaaaactgtaaagtaggttgtgactgtagggatttgtAGTTCTCATGGGCGTTACTGCTCTT-TTTCCCACAGTTAAAAGAATTTCAACAAAGAAACAGTCCTGCTGCTCCATCTCGAGTGAGAAGAAGAAAGAAAAGA---AACAACAGTAGCCGTGAGACATCCGCTTCTGATGGTTGCCAGTCACCATGCCATGTGAGTCTTGGCTGGCCAGGCTTCTGGGGAAAAGGG-GCCCAAGGGGcagtagagggtaattgttaaggttgtggaagaacttctgggtactggttaggaattctgggtttgaatcccacctctccatctgtgaggg-----------------------------atatgat---
i calJac3.chr10             I 299 C 0
s canFam3.chr9               55236093 634 +  61074082 TGTAGGAAAG---GACTCTAAAGT-CAGATTACTCAGATGTTATTTTTCCCAC-----CTTTTCCACCTCCACCTCTGGTTTTGCCTTTTGGCACCTGCTGATTTCATGGCATAACCCCAGAACTCAGAGTCAGAAGACTAAGTTTAAATTCCATTATTGCCTAAGTTTAAATTCCATTATTGCCTTTTCTTTTCTTAGTCATGTTATCAGTCTATTTCTGCAGTCACTGAGA----ATTACAACaccttgtagggctgttggtggcattaagtcagatggcgagtatgggagtatattgt--aaactacaaagttggacatgaatacaggggtttatagttCTCATGAGCCCCACTGATTTTCCTTTCTGTAGTTGAGGGAGTATCAGCAGAAGAACAGCCCTGGTGT------AGGAGCAAAGAAGAAAAGGAAGATTAAAAATGGCAGTAGCCCTGAGACTACCACTTCCAATGATTGTCACTCTCCTGAGGATGTGAGTACTGGCTGGCCAGGTTCCTGGGGCCAGGGGTGTTTGAGGGGCAGTAGAGGGTGGTGGTTGATACTGTGGAGGAGATGTCAGGTAC--------------GGATTTGAATCCTACCTCTCCCTCTGCTGGGAATATGCCCCATCAATAAAGTTGGGGTA----ATAATGTC
i canFam3.chr9              C 0 C 0
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=90939.000000
s hg38.chr15_KI270850v1_alt    311030  99 +    430880 ---------------ttagggcaagttgcttgaggtctttgggcctctcttttca-----catctg---tataataga-----------------------------------------------------------------------------ggtggta-ttttttgacttc--------------------------------------catttgtgaagtttaaatg---agatTC---
s panTro4.chr15              80093530  99 +  99548318 ---------------ttagggcaagttgcttgaggtctttgggcctctcttttca-----catctg---tataataga-----------------------------------------------------------------------------ggtggta-ttttttgacttc--------------------------------------catttgtgaagtttaaatg---agattc---
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81676674 100 +  99152023 ---------------ttagggcaagttgcttgaggtctttgggcctctcttttca-----catctg---tataataga-----------------------------------------------------------------------------ggtggtattttttttacttc--------------------------------------catttgtgaagtttaaatg---agattc---
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19272881 102 - 121039945 ---------------ttagggcaagttgcttgaggtctttgggcctctcttttca-----tatctgtattataacaga-----------------------------------------------------------------------------ggtggta-ttttttgacttc--------------------------------------catttgtgaagtttaaatg---agattc---
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21079088  99 -  24206276 ---------------ttagggcaagttgcttgaggtcttcgggtctctcttttca-----catctg---tataataga-----------------------------------------------------------------------------ggtggga-tttttttacatc--------------------------------------tatttgtaaagtttaaatg---agatTT---
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114304528  99 - 132174527 ---------------ttagggcaagttgcttgagctttttgggcctctcctttca-----catctg---tgaaataga-----------------------------------------------------------------------------ggtgata-ttgtctgacttc--------------------------------------catttgtgagggtgaaatg---agatTC---
i calJac3.chr10             C 0 C 0
s canFam3.chr9               55236727 237 +  61074082 TTAACACTGGTGACACTGGAATGAGATGGTTGATTTTTTTTG---tttcttttaagggtttattta---tttgagagagagcagggggaggggcaaaggaagagggagagagaatcctcaagcagactccctgctgagcacggagcctgatgtctggctgga-tcccatgactctgagatcatgacctgagccggaagaactcaggagtcggacacttaaccaactaagctgtccagatgcccc
i canFam3.chr9              C 0 C 0
e papAnu2.chr7               59717714 3476 + 162156779 I
e macFas5.chr7              108388190 1328 - 171882078 M

a score=350878.000000
s hg38.chr15_KI270850v1_alt    311129 182 +    430880 GTTATTGTTGCTTTTATGTGAAT-CCTTAGTACATGGCCTGCTGCAAACACCCAGGACACCGAGGAAATGGTCGT--------TGCTGTT----TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTGAAAGGGCCCCAGGGT
s panTro4.chr15              80093629 182 +  99548318 gttattgttgcttttatgtgaat-ccttagtacatggcctgctgcaaacacccaggacaccgaggaaatggtcgt--------tgctgtt----TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTGAAAGGGCCCCAGGGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81676774 180 +  99152023 gttattgttgcctttatgtgaat-ccttagtacatggcctgctgcaaacacccaggacaccaaggaaatggtCAT--------TGCTGTT----TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGACCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTA-GAGTCACTGAAAGGGCCCCA-GGT
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19272983 182 - 121039945 gttattgttgcttttatgtgaat-ccttagtacatggcctgttgcaaacacccaggacacccaggaaatggtcgt--------tgctgtt----TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGACCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTGAAAGGGCCCCACAGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108389519 182 - 171882078 GTTATTGTTGTTTTTCTTAGACT-CCTTAGTACATGGCCTGCTGTAAACACCCAGGACACCCACGAAATGGTCAT--------TGCTGTT----TGATTTTTCTCATTCCCAGTCTCAA-GAGGAAGCCAGGTCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTGAAAGGGCCCCAGGGT
i macFas5.chr7              M 1328 C 0
s chlSab2.chr29              21079187 182 -  24206276 GTTATTGTTGTTTTTATGAGAAT-CCTTAGTACATGGCCTGCTGTAAATACCCAGGACACCCACGAAATGGTCGC--------TGCAGTT----TGATTTTTCTCATTCCCAGTCTCAA-GGGGAAGCCAGACCAATGAGAAGAGTCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTGAAAGGGCCCCAGGGT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114304627 183 - 132174527 GTTATTGCTGTTGTTTTGTTAAT-CCCTAGTACATGGCCTGCTGTAAACACCCAGGACACCCAGGAAATGGTCCT--------TGCTGTT----TTGTTTTCCTCACCCCCAGTCTCAAGGGGGAAGCCAGCCCAATGAGAACAGCCATTTGCTGTCAGGCTGTCCCTTTAAGAGTCACTGAAAGGGCCCCAGAAG
i calJac3.chr10             C 0 C 0
s canFam3.chr9               55236964 189 +  61074082 ATTGATGTTGTTTTTATATTAATCCCTTAGGGCCTGGTGTGGGATAAGCATTCAG----TCAAGG--GTAGTCCTATTTGACATACTGACCTGGTGACTTTCCTCATCCCTGGCTTCAGGGGGGAAGCCAGG-CAGTGAGAATAGCCATCTGCCATCACACTGTCCCTATAGGAAGCACCAAAAGAGACCCAGGGT
i canFam3.chr9              C 0 I 4609
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=1031592.000000
s hg38.chr15_KI270850v1_alt    311311 568 +    430880 GGGATGG-------TGGGGAGATAAGAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGAAAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTTTGCCAGTTGATGGGGGAAGAAA-GAAGTCAGAGGGCTTAGACAGTGAGGGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGCAGTCAGCAACAGGTATCTACGGAGAAGGCCGTGCATCCTCTACTACCCTGGAGGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTTGTTGCCCCTCTGCCAGCTGAGGCAGCCCACAC---ACCCCCACCAGCCCTAATGATTATTCTCTCTACCCCTCCCCACAATCTTCCTCCAACTCCTTCT----------CTCTGCATGCACCTCAGAGCCAGTACCAAGAACTAGCAGTGGCCCTGGATTC-AAGCTCCGCAATAATCAGTCAACTCACTGAAAACATCAATTCACTGGTAAGAGTCCAGTGGGGTCCCCTGATTACAGCTGGTCAATCCTGGACTCCAGTTTCCTCTTGGGGC
s panTro4.chr15              80093811 569 +  99548318 GGGATGG-------TGGGGAGATAAGAACCACGAGAGAAGTTGGCACAAACGAGTTATGGGAAAAAGGGTCCAAGATAGACAGAAAAGAAGCTTTTGCCAGTTGATGGGGGATGAAAGGAAGTCAGAGGGCTTAGACAGTGAGGGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGCAGTCAGCAACAGGTATCTACGGGGAGGGCCGTGCATCCTCTGCTACCCTGGAGGATCTGGAGGTCAGAGGCCCTGGGCCGAGATGCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTTGTTGCCCCTCTGCCAGCTGAGGCAGCCCACAC---ACCCCCACCAGCCCTAATGATTATTCTCTCTACCCCTCCCCACAATCTTCCTCCAACTCCTTCT----------CTCTGCATGCACCTCAGAGCCAGTACCAAGAACTAGCAGTGGCCCTGGATTC-AAGCTCCGCAATAATCAGTCAACTCACTGAAAACATCAATTCACCGGTAAGAGTCCAGTGGGGTCCCCTGATTACAGCTGGTCAATCCCGGACTCCAGTTTCCTCTTGGGGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81676954 568 +  99152023 GGGATGG-------TGGTGAGATAAGAACCATGAGAGAAGCTGGCACAAAGGAGTTATGGGACAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTTTGCCAGTTGATGGGGAAGAAAG-GAAGTCAGAGGGCTTAGACAGTGAGGGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGGAGTGAGCAACAGGTATCTACGGGGAGGGCCCTGCATCATCTGCTACCCTGAAGGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGAGCTTGTTGCCCCTCTGCCAGCTGAGACAGCCCACAC---CCCCCCACCAGCCCTAATGATTGTTCTCTCTACCCCTCCCCACAATCTTCCTCCAACTCCTCCT----------TTCTGCATGCACCTCAGAGCCAGTACTAAGAACTAGCAGTGGCCCTGGATTC-AAGCTCCGCAATAATCAGTCAACTCAGTGAAAACATCAGTTCACTGGTAAGAGTCCAGTGGGGTCCCTTGATTCCAGCCTGTCAATCCTGGACTCCAGTTTCCCCTCGGGGC
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19273165 568 - 121039945 GGGATGG-------TGGGGAGATAAGAACCATGAGAGAAGTTGGCACAAAGGAGTTATGGGACAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTTTGCCAGTTGATAGGGAAGAAAG-GAAGTCAGAGGGCTTAGACAGTGAGGGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGCAGTCAGCAACAGGTATCTATGGAGAGGGCCCTGTGTCATCTGCTACCCTGAAGGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTTGTTGCCCCTCTGCCAGCTGAGACAGCCCACAC---CCCGCCCCCAGCCCTAATGATTGTACCGTCTACCCCTCCCCACAATCTTCCTCCAACTCCTCCT----------CTCTGCATGCACCTCAGAGCCAGTATCAAGAACTACCAGTAGCCCTGGAATC-AAGCTCCGCAATAATCGGTCAACTTGGTGAAAACAGCAACTCACTGGTCAGAGTCCAGTGGGGTCCCCTGATTCCAGCCTGTCAATCCTGGACTCCAGTTTCCGCTTGGGGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108389701 566 - 171882078 GGGATGG-------TGGGGTGATAAAAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGACAACTGGTCCAAGATAGGCAGAAAAGAAATGTTTGTCAGTTGATGGGGAAGAAAG-GAAGTCAGAGGGCTTAGACACTGA-GGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGTAGTCAGCAACAGGTGTCTACGGGGAGGGCCCTGTGTCATCTACTAACCTGAAAGATCTGCAGGTAAGAGGCCCTGGGCCGAGGTTCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTGGTTGCCCCTCTCCCAGCTGAGACAGCCCAGACACACCCCTCCCCAGCTCTAATGATTGTTCTCTCTACCCCTCCCCGCAA---TCCTCCAACTCCTCCT----------CTCTGCATGCACCTCAGAGCCAGTACCAAGAACTAGCAGGAGCCCCGGACTCAAAGCTCCGCAATAATCAGTCAACCCAGTGAAAACATCCATTCACTGGGAAGAGTCCAGTGGCGTCCTCTGATTCCACGCTGCCAAACCTGGACTC--GTTTCCCCTTGAGGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079369 568 -  24206276 GGGATCA-------TGGGGTGATAAAAACCATGAGAGAAGTTGCCACAAACGAGTTATGGGACAACTGGTCCAAGATAGGTAGAAAAGAAATGTTTGCCAGTTGATGGGGAAGAAAG-GAAGTGAGAGGGCTTAGACACTGA-GGGGGACAGA--ACATCTCCATGT--GCCCTCTCATCTCTTGTAGTCAGCAACAGGTGTCTACGGGGAGGGCCCCGTGTCATCTACTACCCTGAAAGACCTAGAGGTAAGA-TCCCTGGGCCGAGGTTCAGTGACCCTGCAGGCTAGCCCTCCAACGTCCTCCCACAGCAGGGGCTGGTTGCCCCTCTGCCAGCTGAGACAGCCCAGACACACCCCTCCCCAGCCCCAATGACTGTTCTCTCTACCGCTCCCCACAATCCTCCTCCAACTCCTCCT----------CTCTGCATGCACCTCAGAGCCAGTACCAAGAACTAGCAGGAGCCCCGGACTCAAAGCTCCACAATAATCAGTCAACCCAGTGAAAACATCAATTCACTGGGAAGAGTCCAGTGGCATCCTCTGATTCCACGCTGCCAGTCCTGTATTC--ATTTCCCCTTGGGGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114304810 554 - 132174527 GGGATGG-------TGG-GAGATCAGAACCATGAGAGGAGCTGGCACAAAGGAGTTATGGGACAAAGGGTCTGAGGGAGGCAGAACAGAAAATGCTGCCAGCTGAT-GGGAAGAAAG-GAAGTCAGA-GGCTTGGACACTGA-GGGGGACAGA--ACATCTCCATGT--GCACTCTCATCTCTTGTAGTCAGCAGCAGGTGGTCACAAGGAGGGCCCTGCACCATGTGCCACCATGAAAGATCCAGAGGTAAGAGGCCCTGAGCTGAGGTACAGTGACCCTGCAGGCCAGCCCTCCACCCTTCTCCCACAGTGGCAGCTGGGTGCCCCTCTGCCAGCTGAGACAGCCC---C---ACACACCCCAACCATAATGATTGTTCTCTCTACCTCTCCCT-CAATCCTCCTCCAACTC---CT----------CTCCGCATGCGCGTTAGAGCACACACCAAG---TACAAATAGCCCTGGACTC-GAGCTCAGTCACAACTAGTGAACTGAATAACACCATCAACTTATTGGTAAGAGTCCAGTGGGGTCCCCTGATTCCACGCTGCCAATCCTGGGCTCCAGTTTCCCCTTGGGGC
i calJac3.chr10             C 0 I 247
s canFam3.chr9               55241762 550 +  61074082 GGGATGGATGATGACGGGGGGCTAAGAACCAGGAGGAG---TGGCACAAAGGAG------------GGGTT--AGTTAGGCAGAAAAG------TTTGCAGCTGATGGGCAGGATGA-GGAGTCAGAGGGCTTAGGTACTGG-GGCGGGCAGAGTGCGCCTCCATGTGAGCCCTTTCGTGTCTCCTAGTCTTCATCCTACATCAATGGGGAGGGCCTGGCATCTTCTGCTAACATAAAGGATCTAGAGGTAAGTGGCACTAGACCATGGTCTCAGGACCCTGCAGGCCAGCCCCC--ATCTCCTCCCACAGCGGGGGCTGGGTGCCCCGCTGCCAGCCCAGACAGCCC--------------CCAACCCTAATGACTGCTCTCTCTACCTCTCCC--CAACCCTCGTCCAActcctcctcctcctcctcctcTGCATGCGCCTCAGAGCCGGTACCAAGAGCTATCACTAGCCCTGGACTC-CAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTGGTAAGAGTCCAGTGGGGTCCCCTGATTCCACACTGCCAATCTGGGGCTCCAGTTTTTCCCTGGGGC
i canFam3.chr9              I 4609 C 0
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=418761.000000
s hg38.chr15_KI270850v1_alt    311879 282 +    430880 CCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCT-GGGCACCCAGGTCTCACCTGGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCTGCACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCTAGTCCTTGCCACACATGCCCTGGGGTTGTCACCTCTCTGGGAAGCACTAGCCTgactggttgtcaggggtccatatttctgccctgcctcagtccctaatttgc----tttttgagtctggacaagcca
s panTro4.chr15              80094380 282 +  99548318 CCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCT-GGGCACCCAGGTCTCACCTGGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCTGCACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCTCTGCTCTAGTCCTTGCCACACATGCCCTGGGGTTGTCACCTCTCCGGGAAGCACTAGCCTgactggttgtcaggggtccatatttctgccctgcctcagtccctaatttgc----tttttgagtctggacaagcca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81677522 281 +  99152023 CCTGAAGAA--GGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCTGGGGCACCCAGGTCTCACCTGGAGGGACCCCAGACCACAGAACATGCAGCATGGCTCTTCTGCACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCTTATCCTTGCCACACATGCCCTGGGGTTGTCGCCTCTCAGGGAAGCACTAGCCTgactggttgtcaggggcctgtatttctgccgtgcctcagtccctaatttgc----tttttgagcctggacaagcca
i ponAbe2.chr15             C 0 C 0
s nomLeu3.chr6               19273733 283 - 121039945 CCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCTGGGGCACCCAGGTCTCACCTGGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCCGCACTGCCCTCTTTGCTGACTGTCTCTTCTCCAGACACCCCTGCTCTAGTCCTTGCCACACATGCCCTGGGGTTGTCGCCTCTCAGGGAAGCACTAGCCTGACTGGTTGTCAGGGGCCCGAATTTCTGCCCTGCCTCAGTCCCTAATTTGC----TTTTTGAGTCTGGACCAGCCA
i nomLeu3.chr6              C 0 N 0
s macFas5.chr7              108390267 283 - 171882078 CCTGAAGAAAGGGTCTAGGGGCCCCTGGTGCCAAGGGTAAATGGGGAGCTGGGGCACCCAGGCCTCACCTGGATGGACCCCAGAGCACAGACCGTGCAGCATGGCTCTTCTGCACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCGACTCCTTGCCACACATGCCCTGGGGTTGTTGCCTCTCAGGGAAGCACTAGCCTGGCTGTTTgtcaggggcctgtatttctgccctgactcagtccctaatttgc----tttttgagtctggacaagcct
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079937 276 -  24206276 CCTGAGTAAAGGGGCTAGGGGCCCCTGGTGCCATGGGAAAATGGGGAGCTGGGGCACGCAGGCCTCACCTGGATGGACCCCAGAACACAGACCGTGCAGCATGGCTCTTCTGCACTGCTCTCTCTG----CTCTCTCTTCTCCAGACACTCC-ACTCGAGTTCTTGCCACACACTCTCTGCGGTTGTTGCCTCTCAGGAAAGCACTAGCCTGACTGTTTGTC--GGACCCGTATTTCTATCCTGACTCAGTCCCTAATTTGC----TTTTTGAGTCTGGACAAGCCA
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55242312 267 +  61074082 TCTGAAGAAAGGGGCTGGGGGACCCTGGTGCTAAGGGAGAATGGGGTGTCGGGGGGTTTGAGTCTCAGGTGGAGGGACCCCAGAGCA-------TGCGGCATGGCTCTCTGTGGCTGCCTTCTTTGCCT-CCTTCTGTTCTCCGGACACCCCTGCTTGAGTCCTTTCCATACTTGCCCCAGGGCTGTAGCCTCTGgaggaagcactggcttggctggt------------gtgctcctgccctgacccaacccctaatttgctccatctttgaacttggatgagtca
i canFam3.chr9              C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=248125.000000
s hg38.chr15_KI270850v1_alt    312161 270 +    430880 tctctcctctttatgctcgtgtttctggaggaggtaga-----gagtatcaaaggtcttggttagctctgaAAGTCAGAGATTTAAAGGcccctagaatggaaacctcagggccaagggctcctgtctgtcctttgctgttttatatctctgctatgaagaactgtacctggcctgt---------------acatgctcagtaaatgtttgttgaatgaatgCACGTTTCTAAATCACAAACTGGCAGAAGGGGGGTGGGCCC---TTCTCAAACTCTGTCTCTAGAGGTTC
s panTro4.chr15              80094662 270 +  99548318 tctctcctctttatgctcgtgtttctggagaaggtaga-----gagtatcaaaggtctcggttagctctgaaagtcagagattTAAAGGcccctagaatggaaacctcagggccaagggctcctgtctgtcctttgctgttttatatctctgctatgaagaactgtacctggcctgt---------------acatgctcagtaaatgtttgttgaatgaatgCACGTTTCCAAATCACAAACTGGCAGAAGGGGGGTGGGCCT---TTCTCAAACTCTGTCTCTAGAGGTTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81677803 258 +  99152023 tctctcctccttagggtcatgtttctggaggaggtaga-----gagtatcaaa-gtctctgttagctctgacagtatgagattTAAAGGcccctagaatggaaacctcagggccaagggctcctgtctgtcctttgctgtcttatatctctgctatgaagaa-----------ctgt---------------acgtgctcagtaaatgtttgttgaatgaatgCACCTTTCTAAATCACAAGCTGGCAGAAGGGGGGTGGGCCT---TTCTCAAACTCTGTCTCTAGAGGTTC
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              108390550 268 - 171882078 tctctcctccttgggctcgtgtttctggacgaggtaga-----gagtgtcaaaggtctctgttcgctctgggagtccgagattTAAAGGcccctagaatggaaacctcagggccaagggctcctgtctgtccttttctgtcttctatctccgctgtgaagaaccacacctggcctgt---------------aggtgctcagcacatgtttgttgaatgaacgCACCTTTCTAAATCACAAGCTGGCAGAACGGGG--GGGCCT---TTCTCAAACTCTGTCTCTAGAGGTTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21080213 267 -  24206276 TCTCTCCTCCTTGGGCTCGTGTTTCTGGAGGAGGTAGA-----GAGTATCAAAGGTCTCTGTTAGCTCTGGGAGTCCGAGATTTAAAGGcccctagaatggaaacctcagggccaagggctcctgtctgttcttttctgtcttctgtctctgctgtgaagaaccatacctggcctgt---------------aggtgctcagcagatgtttgttgaatgaacgCACCTTTCTAAATCACAAGCTGGCAGAATGGGG--GGGCCT---TTCTCAAACTCTGTCTCTAGAGGTT-
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55242579 241 +  61074082 cctttcctctctgggcttcagtctcctgaggaggtagaattagaggtgtccaaggtcccctttagctcagagaatcAG--------------------------------------------------gtccttctcattcctgtatccctgctattaagaacagaacctggcctgtgggtacttaggcccagggtgctcagtaaatacttgttgaatgaaAGCACCCTTCCAAATCACGAGCTACCAGAAGGGTA--GTCTCTTGCTTCTCAACTCCTGTTTCTGGAGGTTT
i canFam3.chr9              C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e papAnu2.chr7               59717714 3476 + 162156779 I

a score=2573.000000
s hg38.chr15_KI270850v1_alt    312431 6 +    430880 ACCAGC-
s panTro4.chr15              80094932 6 +  99548318 ACCAGC-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81678061 6 +  99152023 ACCAGC-
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              108390818 3 - 171882078 ---AGC-
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59721190 6 + 162156779 ACCAGC-
i papAnu2.chr7              I 3476 C 0
s chlSab2.chr29              21080480 4 -  24206276 --CAGC-
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55242820 4 +  61074082 ---ATCC
i canFam3.chr9              C 0 I 4002
e calJac3.chr10             114305364 247 - 132174527 I

a score=227903.000000
s hg38.chr15_KI270850v1_alt    312437 175 +    430880 CCCTC-CCTCCAGGGCCCTTTTCCCCCTTTGCTTTGGGCAGGTTCGCACATCTAAGGAGGAGAAGAAGCATGAGATACATCTGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACTCAAAAACCAGACGGGTAAGATGGGGCTGCCATGACCTGGCAGCTGGACTGGCATTAGAGGG
s panTro4.chr15              80094938 175 +  99548318 CCCTC-CCTCCAGGGCCCTTTTCCCCCTTTGCTTTGGGCAGGTTCGCACATCTAAGGAGGAGAAGAAGCATAAGACACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAATTCAAAAAGCAGACGGGTAAGATGGGGCTGGCATGACCTGGCAGCAGGACTGGCATTAGAGGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81678067 172 +  99152023 CCCTC-TCTCTAGGGCCCTTTCCCTGCTGTGCTTTGGGCAGGTTGGCACATTGAAGGAGG---AGAAGCATGAGATACATTGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACTCAAAAACCAGATGGGTAAGATGGGGCTGACGTGACCTGGGAGCAGGACTGGCATCAGAGGG
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              108390821 174 - 171882078 CCCTA-TCACCAGGGCCCTTT-CGCCCTGTGCTTTGGGCAGGTTCACACATTGAAGGAGGAGAAGAAGCGTGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACTCAAACACCAGAGGGGTAAGATGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCAGAGGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7               59721196 175 + 162156779 CCCTCTTCTCCAGGGCCCTTT-CCCCCTGTGCTTTGGGCAGGTTTGCACattgaaggaggagaagaagcatGACCTGCATCAGGTACAGGAGCTGGAGACAAGCTTGACCAAACTGAAGAACCAGATGGgtgagctggggctggggtgaCCTCAAAGCAGGACTGGCATCGGAGGG
i papAnu2.chr7              C 0 n 0
s chlSab2.chr29              21080484 174 -  24206276 CCCTA-TCACCAGGGCCCTTT-CGCCCTGTGCTTTGGGCAGGTTCGCACATTGAAGGAGGAGCAGCAGCGTGAGATACATCGGGTACAGAAGCTTGGCAGGAGCTTCTTCAAACTCAAACACCAGAGGGGTAAGATGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCACAGGG
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55246826 174 +  61074082 CCCCC-CACCCATGTACCCATCCCCCCTGTGATTTGGGCAGATGCACAGATTGAGGGAAGAGAAGGAGCACAGCATGAGTCAGGTGCAGGAGTTGGAGGCCAACTTGGCTGAACTGAAGAACCAGATAGGTAAGCTGAGGCAGGAG-GATCTGGGAGCAGGATTGGTGCCAGAGGG
i canFam3.chr9              I 4002 C 0
e calJac3.chr10             114305364 247 - 132174527 I

a score=671709.000000
s hg38.chr15_KI270850v1_alt    312612 492 +    430880 -CTGTGGGGGTGACTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTGTGCCAGGGGAggacaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagagggagGAGTGCCCATTGTCAGCCACCC---ACAGTGCT--------------------CTCTATCTGAAAGTGACTTGGAAGACTGGCTACCATCCGGGTGTGAGGAGTCATTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGG-------AGGAGCTGTGCACCGAAGGGAGGA-----------tttttttttttttttttttG-------AGAATCCAGAGGCCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCATCTAAGGTAGAGCA------GCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTAGAGAGTGTGGGAAGACAGCTCCAGGCTGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAG
s panTro4.chr15              80095113 489 +  99548318 -CTGTGGGGGTGACTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTGTGCCAGGGGAggacaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagagggagGAGTGCCCATTGTCCGCCACCC---ACAGTGCT--------------------CTCTATCTGAAAGTGACTTGGAAGATTGGCTACCATCCGGGTGTGAGGAGTCATTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGG-------AGGAGCTGTGCACCGAAGGGAGGA--------------TTTTTTTTTTTTTTTTG-------AGAATCCAGAGGCCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCATCTAAGGTGGAGCA------GCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTAGAGAGTGTGGGAAGACAGCTCCAGGCTGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAG
i panTro4.chr15             C 0 I 2030
s ponAbe2.chr15              81678239 475 +  99152023 -CTGTGGGGGTGACTTAGAATGCCCCAGGGAGGTGGG---------------TGAGGCAGAGGGAAAGAGGTCTGTGCCAGGAGATggcaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagagggagGAGTGCCCATTGTCAGCCACCC---ACAGTGCT--------------------CTCTATGTGAAAGTGACTTGGAAGATTGGTTACCATCTGGGTGCCAGGAATCATTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGG-------AGGAGCTGTGCACTAAAGGAAGGa------------tttttttttttttttttta-------aGAATCCAGAGGCCCTTACTGTCTGCTTCCTTTCT-----------CAGCTGAACCCTT-GCCCCGGAGACCCCAGCAGGGCCCTCTGAGATGGAGCA------GCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTGGAGAGTGTGGAAAGAGAGCTCCAGGCTGAGGTGGAAAATAATCAGATGTTGAGTCTCCTGAACAGAAG
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              108390995 502 - 171882078 -CTGTGGGGGTGGCTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAGAGAGGTCTGTGCCAGGAGACTGCAAGCCTTGTCATCTGCTTGAGCCTTGGTGTCCCCATCAGCAAAGAGGGAGGAGTGCCCATTGTCAGCCACCC---ACAGTGCT--------------------CTCCAT-TGAAAGTGGCTTGGAAGATTGGCTACCATCTGGGTGCGAGGAATCCTTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGG-------AGGAGCTCTGCACCAATGGGAGGAttttttttttttttttttttttttttttttG-------AGAATCCAGAGACCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAACCCCGGGCCCCAGATTCCCCAGGAGGGCCCTCTGAGGTGGAGCA------GCTACAAGATGAGACCAAACACCTAAGGAAGGAGCTGGAGAGTCTGGGAAGACAGCTCCAGGCCGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              72703 483 +    130206 -CTGTAGGGGTGGCTTAG-ATGCcccagggaggtgggtggatggaagggctttgaggcagagggagagaggtcTGTGCCAGGAGACTGCAAGCCTTGTTAACTGCTGGAGCCTTGGTGTCCCCATCAGTAAAGAGGGAGGAGTGCCCATTGTCAGCCACCC---ACAGTGCT--------------------CTCCAT-TGAAAGTGGCTTGGAAGATTGGCTACCATCTGGGTGTGAGGAATACTTAGCAGTGAGGCCAAGTTTGAGAAGCCTGAGAGG-------AAGAGCTCTGCACCaatgggagga------------------ttttttttttttg-------agaatccaGAGACCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAACCCCGGGCCCCAGATTCCCCAGGAGGGCCCTCTGAGGTGGAGCA------GCTACAAGATGAGACCAAACACCTAAGGAAGGAGCTGGAGAGTCTGGGAAGACAGCTCCAGGCCGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAAcaggag
i papAnu2.JH685126          I 92 C 0
s chlSab2.chr29              21080658 486 -  24206276 -CTGTGGGGGTGGCTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAGAGAGGTCTGTGCCAGGAGACTGCAAGCCTTGTCATCTGCTTGAGCCTTGGTGTCCCCATCAGCAAAGAGGGAGGAGTGCCCATTGTCAGCCACCC---ACAGTGCT--------------------CTCCAT-TGAAAGTGGCTTGGAAGACTGGCTACCATCTGGGTGCGAGGAATCCTTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGG-------AAGAGCTCTGCACCAATGGGAGAA----------------TTTTTTTTTTTTTTG-------AGAATCCAGAGACCCTTATGGTCTGCTTCCTTTCT-----------CAGCTGAACCCCGGGCCTCAGATCCCCCAGCAGGGCCCTCTGAGGTGGAGCA------GCTACAAGATGAGACCAAACACCTAAGGAAGGAGCTGGAGAGTCTGGGAAGACAGCTCCAGGCCGAGGTGGAAAACAATCAGATGCTGAATCTCCTGAACAGGAG
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55247000 494 +  61074082 CTGGTGAGGATGCCTTCAAATGCCCTAAGGATGTGGGTGGATGGAAGGGGACTGTGGCCCAGGGAAAGAGGTCCGTACTAGGAGTTGGCCAGGTT---------------------------------------GGGCAGTGTGCCCGCTGGCAACCACTCCGAATTGTCCTGAGCATAAAAATATTAAAAACTCTTTTCAAAAGTGTCTTGAAAGAGTGCATATCCCCTGAGGGTGAGGGATTGTGAGCCAGGAAGCCAAGGTTTGG--GGCGAGGAGGCCCAGTTAGGAGCTGTGGATCAAGAAGAGGG-----------------------CTTTTTTGAAGGCACAGAGGTGAGAGGCCCCTAGCGTGTGTCCCCCTCCCCCTGCTCCCCACAGTGGTGCCCCCAGCCCAGGAGCCCCCAGCCAGGCCCTTGGAGGAGGAGCAGCAGCGGCTGCACGCCGAGACTGAACAACTACAGAAGGAGCTGGAGAGCCTGGCCGAGCAGGTGCAGGCCCAAGTGAAAGACAACGAAGGTTTGAGTCGCCTGAACCGGGA
i canFam3.chr9              C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I

a score=25298.000000
s hg38.chr15_KI270850v1_alt    313104 16 +    430880 ACAGGAGGAGAGGCTA
s panTro4.chr15              80097632 16 +  99548318 ACAGGAGGAGAGGCTA
i panTro4.chr15             I 2030 C 0
s ponAbe2.chr15              81678714 16 +  99152023 ACAGGAGGAGAGGCTA
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              108391497 16 - 171882078 ACAGGAGGAGAGGATA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73186 16 +    130206 acaggaggagaggcta
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081144 16 -  24206276 ACAGAAGGAGAGGATA
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55247494 16 +  61074082 GCAGGAGCAGCGGCTG
i canFam3.chr9              C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I

a score=26603.000000
s hg38.chr15_KI270850v1_alt    313120 22 +    430880 CGTGAACAGGAGGAGAGGCTAC
s panTro4.chr15              80097648 22 +  99548318 CGTGAACAGGAGGAGAGGCTAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81678730 22 +  99152023 CATGAACAGGAGGAGACGCCAC
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              108391513 22 - 171882078 CGTGAGCAGGAGGAGAGGCTAC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73202 22 +    130206 cgtgagcaggaggagaggatac
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081160 22 -  24206276 CGTGAGCAGGAGGAGAGGATAC
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55247510  0 +  61074082 C

a score=157534.000000
s hg38.chr15_KI270850v1_alt    313142 231 +    430880 GTGAACAGGAGGAGAG---------------------GCTACGTGAACAGGAGGATAGGCTACATGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGAGGCTGTGTGAACAGGAGGAGAGGCTACGTGAACATGAGGAGAGGCTGTGTGAACAGGAGGAGAGGCTATGTGAACAGGAGGAGAGG---------------------CTACGTGAACAGGAGGAGAGGCTGTGTGAACAGG---------------AGGAGAGGCTACGTGAACAGGAGGAGAGGCTGT
s panTro4.chr15              80097670 231 +  99548318 GTGAACAGGAGGAGAG---------------------GCTACATGAACAGGAGGAGAGGCTACATGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGAGGCTGTGTGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGAGGCTACATGAACAGGAGGAGAGGCTACATGAACAGGAGGAGAGG---------------------CTACGTGAACAGGAGGAGAGGCTGTGTGAACAGG---------------AGGAGAGGCTACATGAACAGGAGGAGAGGCTGT
i panTro4.chr15             C 0 C 0
s macFas5.chr7              108391535 246 - 171882078 ATGAGCAGGAGGAGAG---------------------GCTATCTGGGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAAGCTACATGAGCAGGAGGAGAGGATATCTGGGCAGGAGGAGAGGATACATGAGCAGGAGAAGAGG---------------------ATACATGAGCAGGATGAGAGGATACGGGAGCAGGAGTGGCTGCCAGAGCAGGAGAGGCTGTTGGAGCAGGTGGAGAAGCTAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73224 231 +    130206 atgagcaggaggagag---------------------gctatctgggcaggaggagaggatacgtgagcaggaggagaggatacgtgagcaggagaagatgatacgtgagcaggaggagAAGCTACATGAACAGGAGGAGAGGCTAtctgggcaggaggagaggatacatgagcaggaggagaag---------------------ctacatgagcaggaggagaggctatctgggcagg---------------aggagaggatatgtgagcaggaggagaggatac
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081182 272 -  24206276 ATGAGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAAGCTATCTGGGCAGGAGGAGAGGATACATGAGCAGGAGGAGAGGATACGTGAGCAGGAGGAGA-GCTATCTGGGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAAGCTATCTGGGCAGGAGGAGAGGATACATGAGCAGGAGGAGAAGTTATCTGGGCAGGAGGAGAAACTACATGAGCAGGAGGAGAAACTACATGAGCAGG---------------AGGAGAGGCTATCTGGGCAGGAGGAGAGGATAC
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55247510   0 +  61074082 C
e ponAbe2.chr15              81678752   0 +  99152023 C

a score=57326.000000
s hg38.chr15_KI270850v1_alt    313373 118 +    430880 ------------------------------------------GTGAACAGGAGAAGCTGCCAGGGCAGGAGAGGCTGCTGGAAGAGGTGGAGAAGCTGTTAGAACAGGAGAG------------------------------------------------------------GCGGC------------------AGGAGGAGCAGGAGAGGCTGCTGGAGAGGGAGAGGCTGCTGGA
s panTro4.chr15              80097901  40 +  99548318 ------------------------------------------GTGAACGGGAGAAGCTGCCAGGGCA------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGAGGCTGCTGGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15              81678752 118 +  99152023 ------------------------------------------GTGAGCAGGAGAAGCTGCCAGGGCAGGAGACACTGCTGGAGCAGGTAGAGAAGCTGTTGGAACAGGAGAG------------------------------------------------------------GTGGC------------------AGGAGGAGGAGGAGAGGCTGCTGGAGAGGGAGAGGCTGCTGGA
i ponAbe2.chr15             C 0 I 24
s macFas5.chr7              108391781 139 - 171882078 TGGAACAGGAGAGGTG---------GCAGGA------------GGAACAGGAGAGGCTGCTAGACCATGGGAAGCTGCTGGAGCAGGTGGAGGAACTGTTGGAACAGGAGAG------------------------------------------------------------GTTGC------------------GGGAGCAGGATGAGAGACTGCGGGAGCAGGAGAGGCTGCTGGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73455 238 +    130206 atgagcaggagaagaggatacatgagcaggatgagaggatatgggagcaggagTGGCTGCCAGAGCaggagaggctgctggaggaggtgaaaaagctattggaacaggagagatgggaggaggaggaggagaagctgcTAGAGCATGAGAGGCTGCTGAACCAGGTACAGAAGCTGCTGGAAGAGGAGAGGCTGCGGGAGCAGGATGAGAGACTCCGGGAGCAGGAGAGGCTGCTGGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081454 160 -  24206276 GTGAGCAGGTGGAGAGGATACATGAGCAGGATGAGAGGATACAGGAGCAGGAGTGGCTGCCAGAGCAGGAGAGGCTGCTGGAGGAGGTGAAAAAGCTGTTGGAACAGGAGAG------------------------------------------------------------ACGGG------------------AGGAGGAGGAGGAGAAGCTGCTAGAGCATGAGAGGCTGCTGAA
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55247510   0 +  61074082 C

a score=65004.000000
s hg38.chr15_KI270850v1_alt    313491  97 +    430880 AGAGGTGGAGAAGCTGTTAGAACAGGAGAGGCGGCA------------------------------------------------------------GGAGGAGCAGGAGAGGCTGCTGGAGAGGGAGAGGCTGCTGGACGAGGTGGAGGAGCTCCTG
s panTro4.chr15              80097941  97 +  99548318 AGAGGTGGAGAAGCTGTTAGAACAGGAGAGGCAGCA------------------------------------------------------------GGAGGAGCAGGAGAGGCTGCTGGAGAGGGAGAGGCTGCTGGACGAGGTGGAGGAGCTCCTG
i panTro4.chr15             C 0 I 837
s macFas5.chr7              108391920  97 - 171882078 GCAGGTGGAGAAGCTTTTGGAACGGGACAGGCAACA------------------------------------------------------------GGAGGAGCAGAAGAGGCTGCTGGAGGAGGAGCAGCTGCTGGACCAAGTGGAGGAGCTGCTG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73693  97 +    130206 GCAGGTGGAGAAGCTTTTGGAACGGGACAGGCAACa------------------------------------------------------------ggaggagcagaagaggctgctggaggaggagcagctgctggaccaagtggaggagctgctg
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081614 157 -  24206276 CCAGGTAGAGAAGCTGCTGGAAGAGGAGAGGCTGCGGGAGCAGGACGAGAGACTGCTGGAGCAGGTGGAGCAGCTTTTGGAACGGGAGAGGCAACAGGAGGAGCAGAAGAGGCTGCTGGAGGAGGAGCAGCTGCTGGACCAAGTGGAGGAGATGCTG
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55247510   0 +  61074082 C
e ponAbe2.chr15              81678870  24 +  99152023 I

a score=-3137.000000
s hg38.chr15_KI270850v1_alt    313588 18 +    430880 GACGAGGTGGAGGAGCTC
s macFas5.chr7              108392017  2 - 171882078 GA----------------
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73790 15 +    130206 gaaca---ggagaggctg
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081771  2 -  24206276 GA----------------
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55247510  0 +  61074082 C
e ponAbe2.chr15              81678870 24 +  99152023 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=11797.000000
s hg38.chr15_KI270850v1_alt    313606 30 +    430880 CTGGA------GCAGGAGAGGCTTCGGTAACAGGAT
s macFas5.chr7              108392019 25 - 171882078 -----------ACAGGAGAGGCTGCGGGAGCAGGAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73805 36 +    130206 cGGGAGCAGGTACAGGAGAGGCTGCGGGAGCAGGAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081773 25 -  24206276 -----------ACAGGAGAGGCTGCGGGAGCAGGAT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55247510 25 +  61074082 CTGGA------GCTGGAGCG-----GGCAGCCGAGT
i canFam3.chr9              C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e ponAbe2.chr15              81678870 24 +  99152023 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=112505.000000
s hg38.chr15_KI270850v1_alt    313636 139 +    430880 GAGAGGCT-GTGGCAGCAGG-AGACTCTGCGGGA-CTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTGTACGAGCAGCGGGCCGAGCCACGCAGCGGCTTCGAGGAGCTGGTGCGTTGCCC
s ponAbe2.chr15              81678894 122 +  99152023 GAGAGGCT-GTGGCAGCAGG-AGACT------------------CTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTCCACAAGCAGTGGGCGGAGCCACACAGCGGCTTTGAGGAGCTGGTGCATTGCCC
i ponAbe2.chr15             I 24 C 0
s macFas5.chr7              108392044 140 - 171882078 CAGAGGCT-GTGGGAGCAGG-AGACACTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTCTACGAGCAGCAGGCGGAGCCACACAGTAGCTTCGAGGAGCCGGTGGGTTGCCC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73841 140 +    130206 CAGAGGCT-GTGGGAGCAGG-AGACACTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTCTACGAGCAGCAGGCGGAGCCACACAGTAGCTTCGAGGAGCCGGTGGGTTGCCC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081798 140 -  24206276 CAGAGGCT-GTGGGAGCATG-AGACACTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTCTACGAGCAGCAGGCGGAGCCACACAGCAGCTTCCAGGAACTGGTGGGTTGCCC
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55247535 151 +  61074082 -----GCTGGGGGGAGCAGGCAGA-------------GGAACGCAAGCAGATTCTGGAGAGCATGCAGAGCGATCGCACCACCATCAGCCGTGCGCTCTCCCAGAACCGCGAGCTCAAGGAGCAGCTGGTTGAGCTGCAGAACGGCTTCGTCAAGCTGGTGTGTAGCCC
i canFam3.chr9              C 0 I 45
e calJac3.chr10             114305364 247 - 132174527 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=24496.000000
s hg38.chr15_KI270850v1_alt    313775 28 +    430880 CACCTGGGGAGGCTGCCCTCTTCCCTAG
s ponAbe2.chr15              81679016 28 +  99152023 CACCTGGGGAGGATGCCCCCTTCCCTAG
i ponAbe2.chr15             C 0 C 0
s macFas5.chr7              108392184 28 - 171882078 CACCTGGGGAGCCTGCCCTCTTCcctag
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              73981 28 +    130206 CACCTGGGGAGCCTGCCCTCTTCCCTAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081938 28 -  24206276 CACCTGGGGAGCCTGCCCTCTTCCCTAG
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55247686 45 +  61074082 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=393801.000000
s hg38.chr15_KI270850v1_alt    313803 397 +    430880 CCCTCAAGgcctttgtttccccacctgtaaaatggggCA--TTGTAGCCTTCACATG---AAATGGTACTTCTAAAGGCA-TCTGTGAGCC--AGAGCCCTGCTCTGATGGCTGTGGGAGAGA-GGGGAT-ATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGC-GACACTAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGGCCACTGATTGCTTCTCTCTGTCCAGAACAACGAGAACAAG---------AGCACACTGCAGTTGGAGCAGCAAGT---AAAGGAGCT------------------------GGAGAAGTCGGGTGAGCTGAAAGAGACTGTAA-----CCTCCGACCCATCCAAGAAGATGTGGGAGGCGGGC--ACCAGCCTCTGGGGAGGGGAGGTGCCAGGCCACAGGCAGCTGCAGCCTGGGGAC----
s ponAbe2.chr15              81679044 399 +  99152023 ctctcaaggcctttgtttccccacctgtaaaatggggca--ttgtagccttcatatg---aaatggtactTCTAAAGGCA-CCTGTGAGCC--AGAGCCCTGCTCTCATGGCTGTGGGAGAGA-GGGGATGATTTTTCTAATCTGCCTCCACCCTTCCTGGTGCCATGGGAGGCAGACCCCAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGGCCACTGATTGCTTCTCTCTGTCCAGAACAACGAGAACAAG---------AGCACACTGCAGTTGGAGCAGCAAGT---AAAGGAGCT------------------------GAAGAAGCTGGGTGAGCTGAAAGAGATGGTAA-----CCTCTGACCCATCCAAGAAGGGCTGGGAGGCAGGC--ACCCACCCCTGGGGAGGGGAGGTGCCAGGCCAGAGGCAGCTGCAGCCCGGGGGC----
i ponAbe2.chr15             C 0 n 0
s macFas5.chr7              108392212 399 - 171882078 ccctccaggcctttgtttccccacctgtaaaatggggCA--TTGTAGTCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCC--AGAGCCCTGCTCTGATGGCTGTGGGAGAGA-GGGGATGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGCAGGCAGACACCAAGTTCTGGGGTCTCCAGCTATAGCGGGTGGCCAATGATTGCTTCTCTCTGTCCAGAACAATGAGAACAAG---------AGCGCACTGCAGTTGGAGCCTCAAGT---AAAGGAGCT------------------------GAAGACGCTGGGCGAGCTGAAAGACACGGTAA-----CCTCTGACCCATCCAAGAAGGGCTGGGAGGCGGGC--ACCAGCCTCTGGGGAAGGGAGGCGCCAGGCCAGAGGCAGCTGCAACCTGGGGGC----
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              74009 399 +    130206 CCCTCCAGGCCtttgtttccccacctgtaaaatggggca--ttGTAGTCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCC--AGAGCCCTGCTCTGATGGCTGTGGGAGAGA-GGGGATGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGCAGGCAGACACCAAGTTCTGGGGTCTCCAGCTATAGCGGGTGGCCAATGATTGCTTCTCTCTGtccagaacaatgagaacaag---------aGCGCACTGCAGTTGGAGCCTCAAGT---AAAGGAGCT------------------------GAAGACGCTGGGCGAGCTGAAAGACACGGTAA-----CCTCTGACCCATCCAAGAAGGGCTGGGAGGCGGGC--ACCAGCCTCTGGGGAAGGGAGGCGCCAGGCCAGAGGCAGCTGCAACCTGGGGGC----
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21081966 398 -  24206276 ccctccaggcctttgtttccccacctgtaaaatggggCA--TTGTAGCCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCC--AGAGCCCTGCTCTGATGGCTGTGGGAGAGA--GGGATGATTTTTCTAACCTGCTTCCACCCTTCGCGGTGCCATGGCAGGCAGACACCAAATTCTAGGGTCTCCAGCTATAGTGGGTGGCCAATGATTGCTTCTCTCTGTCCAGAACAATGAGAACAAG---------AGCGCACTGCAGTTGGAGCCGCAAGT---AAAGGAGCT------------------------GAAAACGCTGGGCGAGCTGAAAGACACGGTAA-----CCTCTGACCCATCCAAGAAGGGATGGGAGGCGGGC--ACCAGCCTCTGGGGAAAGGAGGGGCCAGGCCAGAGGCAGCTGCATCCTGTGAGC----
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55247731 431 +  61074082 ccctctaggcctttgtctccccacgtgtaaatgggggaAGGGTGTATGCACCCAATGTGAAAATGGTGCCCTTGAAGGCACCCTGTGAGCCGGAGAGCCCTGCTGAGATGAGTGGGGCAGAGGTGGTGAGGAC-------ACCTGCCTCCACTCTTCCCTGCACTGTGGGAGGTAGACTCCATGTTCTG-----------------GGGTGGCCACTGACTCCTCTTCTCTCTCCAGTCCAACGAGAACATGGAGATTACTACCGCACTGCAGTCGGAGCAGCATGTCAAGAAGGAGCTGGCCAAGAAGCTGGGCCAGCTGCAGGAGAAGCTGGGAGAGCTAAAGGAGATGGTAACTTACCCCCCACACCAGCTGAGGAAGCCTGGAGGACAAACCTACCTGCTCGGAGGGTGGGAGGTTGCCCAGGATGGTGCAGCTCCAGCCTGTGGGGGGAC
i canFam3.chr9              I 45 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=125087.000000
s hg38.chr15_KI270850v1_alt    314200 157 +    430880 AGGTGACCCCAGCACCCTCCGGGGCAGTCCTAT----------GACTGTTTCTTGCTTCCT-GCCCTCTGACTTTTAGAGGTGGGTAGCCCTGGGGTCCTCCC-AGGTCTGGACATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATCACAGAGGAAGAGACAGTG
s ponAbe2.chr15_random       10102666 159 +  10928107 AGGTGACCCAAGCACCCTCCAGGGCAGTCCTAT----------GACTGTTTCTTGCTTCCTTGCCTTCTGACTTTTAGAGGTGGGTAGCCCTGGGCTCCTCCCCAGTTCTGGACATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATTGCAGAGGAAGAGACAGTG
i ponAbe2.chr15_random      I 184 C 0
s macFas5.chr7              108392611 154 - 171882078 AGGTGACCCCAGCACTCTCCAGGGCAGTGCTAT----------TGCTGTTTCTTGCATCTT-TCCCTCTGACTTTTAGAGGTGGGGAGCCCTGGGCTCCCCCC-AGGTCTGGAT---ATCATCCCAGCTAGAGGCATGGAGCCCCCCAGTCACAGGGGAAGAGacagtg
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              74408 157 +    130206 AGGTGACCCCAGCACTCTCTAGGGCAGTCCTAT----------TACTGTTTCTTGCATCTT-TCCCTCTGACTTTTAGAGGTGGGGAGCCCTGGGCTCCCCCC-AGGTCTGGATATCATCATCCCAGCTAGAGGCATGGAGTCCCCCAGTCACAGTGGAAGAGACAGTG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21082364 147 -  24206276 AGGTGACC----------CTGGGGCAGTCCTAT----------TACTGTTTCTTGCATCTT-CCCCTCTGACTTTTAGAGGTGGGGAGCCCTGGGCTCCCCCC-AGTTCTGGATATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAGTCACAGTGGAAGAGACAGTG
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55248162 148 +  61074082 ACCTGACTCCAGAGTCCTTC----CAATCCTGCCTGTGGTGCAGGCCCCTTGTCACTCCCA-GCTGTCTGACTCTACAGAGTGGGTATCCCTGGG-------------CTGAAGGTCCTCGTCCTGGCTAGAGAGCTCAGGCCCCTAACG---Aggtcaagagatggtg
i canFam3.chr9              C 0 I 297
e calJac3.chr10             114305364 247 - 132174527 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=315463.000000
s hg38.chr15_KI270850v1_alt    314357 405 +    430880 GTATAAGAGGCTCCTTATgtcgggtgtggtggctcacgcctgcaatcccagcactttgggaggctgaggcaggacaatcacttgaggtcaggagtttgagaccaacatggccaacatggtgaaagctcatctctactaaaattaaaaaaaataataataattagccgggcctggtggtgcatgcctgtaatcccagctactcaggaggctgagacacgagaatcacttgtgcccgggaggtgaaggttgcagtgagctgagattgcaccactgcactgcagcctgggacacagagtgacactctctcaaaacaaaacaaaacagaaaaacaaaaaaGACTCCTTAGATTCAAACTGGATTCCGGCCTCGGTTCCACTGGTCATAATTCAACTactttgcatctct
s ponAbe2.chr15_random       10102825 399 +  10928107 GTATAAGAGGCTCTTTGTCTcgggtgtggtggctcacgcctgtaatcccggcactttgggaggctgaggcaggacaatcacttgaggtcaggagtttgagaccagcatggccaaaatggcaaaagctcatctctactaaaatttaaaaaa-taataataattagccaggcctggtggtgcatgcctgtaatcccagctactcaggaggctgagacatgagaatcacttgagcccaggaggtgaaggttgcagtgagctgagattgcaccactgcactccagcctgggacacagagtgacactgtctcaaaacaaaacaaaa-----aaacaaaaaaGACTCCTTAGATTCAAACTGGATTCCGGCCTCAGTTCCACTGGTCATAATTCAACTactttgcatctct
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7              108392765 403 - 171882078 gtataagaggctccttatgttgggtgtggtggctgacgcctgtagtcccaccactttgggaggctgaggcaggagaatcacttcaggtcaggagtttgagaccagcctggttgacatggcaaaacctcatctctactaaaatttcaaaaa--aaaaccaattacctaggcctggtggtgcatgcctgtcatcccagctactcaggaggctgagatacgagaatcatttgagcctgggaggtagaggttgcagtgagctgagatcgcaccactggactccagcctgggacacagagtgacactgtctcaaaacaaaacaaaatgcaaaaaccaaaaagactccttagactcaaactggtttccagactcggttctactggttatcattcaactactttgcatttct
i macFas5.chr7              C 0 I 306
s papAnu2.JH685126              74565 403 +    130206 GTATAAGAGGCTCCTtatgttgggtgtggtggctaacgcctgtagttccaccactttgggaggctgaggcaggagaatcacctgaggtcaggagtttgagaccagcctggttgacatggcaaaacctcatctctactgaaatttcAATAA--AAAACCAATTACctaggcctggtggtgcatgcctgtcatcccagctactcaggaggctgagatacgagaatcatttgagcctgggaggtagaggttgcagtgagctgagatcgcaccactggactccagcctgggacacagagtgacactgtctcaaaacaaaacaaaacgcaaaaaccaaaaaGACTCCTTAGACTCAAATTGGTTTCCGGACTTGGTTCTACTGGTTATTATTCAACTAGTTTGCAtttct
i papAnu2.JH685126          C 0 I 2652
s chlSab2.chr29              21082511 397 -  24206276 GTATAAGAGGCTCCTTATGTTgggtgtggtggctaacgcctgtagt-ccaccactttgggaggccgaagcaggagaatcacttgaggtcaggagtttgagaccagcctgactgacatggcaaaacctcatctctactaaaatttcaaaaa--aaatataattacctaggcctggtggtgcatgcctgtcatcccagctactcaggaggctgacacacgagaatcatttgagcctgggaggtagaggttgcagtgagctgagatcgcatcactggactccagcccgggacacagagtgacactgtctcaaaacaaaac-----gcaaaaaccaaaaaGACTCCTTAGACTCAAACTGGTTTCCGGACTCGGTTCTACTGGTTATCATTCAACTactttgcattttt
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=37134.000000
s hg38.chr15_KI270850v1_alt    314762 43 +    430880 aagtctctgtttctttaacttcaaaaggaagttagccttttcc
s ponAbe2.chr15_random       10103224 43 +  10928107 aagtctctgtttctttaacttcaaaaggaagttagccttttcc
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7              108393474 43 - 171882078 aagtctctgtttctttaacttcaaaaggaagttagcgttttcc
i macFas5.chr7              I 306 C 0
s papAnu2.JH685126              77620 43 +    130206 aaGTCTCTGTTTCTTTAACTTCAAAAGGAAGTTAGCGTTTTCC
i papAnu2.JH685126          I 2652 C 0
s chlSab2.chr29              21082908 43 -  24206276 aagtgtctgtttctttaacttcaaatggaagttagcattttcc
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=348222.000000
s hg38.chr15_KI270850v1_alt    314805 378 +    430880 ttgcagaggtgctgaggattaaatgagataatacg-tggaaacattaggcatgta--gcacacttagcagatggtGGTTGGCTCCGCCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTACATGCTGGGAAAAAGGACGTGAGATTTGATGCTAGGGAAGGAGGCATGGGGTTCTAAGCAAGGGAGACAG--TCTCTTAGG-CCTGGAGCAAGGGG-CCAGGGGCCTGGGCAGGCCACAGAGCCCCACAGTGCCCTCGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCCACCACATGTCCTCATGCCCAGGGTCTTCCGGCAGGTGGAGCTGAAGAGCCAAGAGGCTCCGAGTCTGCAGCAGCAGCCAGACCAGTACCT
s ponAbe2.chr15_random       10103267 380 +  10928107 ttgcagaggtgctgaggattaaatgagataatacg-tggaaacattaggcatgta--gcacacttagcagatggtgaTTGGCTCCCCCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGCTGGGAAAATGGACATGAGATTTGAGGCTGGGGAAGGAGGCATAGGGTTCTAGGCAAGGGAGGCAGAGTCTCTTAGG-CCTGGAGCAAGGGG-CCAGGGGCCTGGGCAGGCCACAGTGCCCCACAGTGCCCTCGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCCACCACATGCCCTCATGCCCAGGGTCTTCCGGCAGGTGGAGCTGAAGAGCCAAGAGGCTCCGAGTCTGCAGCAGCAGCCAGACCAGTACCT
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7              108393517 377 - 171882078 ttgcagaggtgctgaggattaaatgagataatacg-tggaaacattaggcatgta--gtacacttagcagatgctggttGGCTCCCCCCG-TTTTCCACTAGTCTGTGGTCTACAGTTTAAATGACAGGGAAAAGCGTGTGAGATTTGACGCTGGGGAAGGATGCATTGGGTTCCAGGCAAGGGAGGCAg--gctctgagg-cctggagcaaggga-ccaggggcctgggCAGGCCACAGAGCACCACAGTGCCCTTGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCTAGTAAACGCCCTCATGCCCAGGATCATCCTGCAGGTGGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCAGCAGCAGGGAGACCAGTACCT
i macFas5.chr7              C 0 I 1436
s papAnu2.JH685126              77663 376 +    130206 TTGCAGAGgtgctgaggattaaatgagataatacg-tGGAAACATTAGGCATGTA--GTACACTTAGCAGATGCTGGTTGGCTCCCCCTG-TTTTCCACTAGTCTGTGGCCTACAGTTTAAATGATAGGGAAAAGCGTGTGAGATTTGAGGCT-GGGAAGGATGCATTGGGTTGCAGGCAAGGGAGGCAG--GCTCTTACG-CCTGGAGCAAGGGA-CCAGGGGCCTGGGCAGGCCACAGAGCACCACAGTGCCCTTGCTACCCTATTCATGGGCCAGGAATCTGGAAGCCAGCTAATAAACGCCCTCATGCCCAGGATCTTCCTGCAGGTGAAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCAGCAGCAGGGAGACCAGTACCT
i papAnu2.JH685126          C 0 I 1757
s chlSab2.chr29              21082951 373 -  24206276 ttgtagaggt-ctgaggattaaatgagataatatg-tggaaacattaggcatgta--gtacacttggcaGATGGCGGTTGGCTCCCC--G-TTTTCCACCAGTCTGTGGCCTACAGTTTAAATGATAGGGAAAAGCATGTGAGATTTGAGGCTGGGGAAGGATGCATTGGGTTCCAGGCAAGGGAGGCAG--TCTCTTAGG-CCTGGAGCAAGGGA-CCAGGGGCCTGGGCAGGCCACAGAGCACCACAGTGCCCTTGCTACCCTATTAATGGGCCAGGAATCCGGAAGCCAGCTAGTAAATGCCCTCATGCCCAGGATCTTCCTGCAGGTGGAGCTGAAGAGCC-AGGGGCTCAGAGTCTGCAGCAGCAGGGAGACCAGTACCT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55248607 332 +  61074082 ctgcccaggtgtcaagaattaaatgaga-agcatgcctgtaGTGTGAGGCATTCAGGGCGCACT---CAGATGTCCATGGGCGCACTTTGCTTTTCCACTAA------------AGTGAAAAT----AGAAGGTGGTCATGAGGCATGAGGAAGGGTAAGGGAAGTGTGGGTCCCTGGATATAGGGGCAG--TCACTGAAGTCCTAGAGCGAGGAAGCCAGGGGCCTGGGCGGGCCGCAGAGC---------CTCCCGCTTTCCTCTCAGCA-----------CGGGTGCCAG-----------CCTTAGTCCCTGGGTCTTCCCACAGGTGGAGCTGAAGAGCCAGGAGGCTCAGAATCTACAGCAGCAGCGGGACCAGTACAT
i canFam3.chr9              I 297 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=1500.000000
s hg38.chr15_KI270850v1_alt    315183 1 +    430880 G
s ponAbe2.chr15_random       10103647 1 +  10928107 G
i ponAbe2.chr15_random      C 0 I 13
s macFas5.chr7              108395330 1 - 171882078 G
i macFas5.chr7              I 1436 C 0
s papAnu2.JH685126              79796 1 +    130206 G
i papAnu2.JH685126          I 1757 C 0
s chlSab2.chr29              21083324 1 -  24206276 G
i chlSab2.chr29             C 0 I 1383
s canFam3.chr9               55248939 1 +  61074082 G
i canFam3.chr9              C 0 I 1663
e calJac3.chr10             114305364 247 - 132174527 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=1746.000000
s hg38.chr15_KI270850v1_alt    315184 3 +    430880 GAG
s ponAbe2.chr15_random       10103661 3 +  10928107 GAG
i ponAbe2.chr15_random      I 13 C 0
s macFas5.chr7              108395331 3 - 171882078 GAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              79797 3 +    130206 GAG
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55248940 1663 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=185997.000000
s hg38.chr15_KI270850v1_alt    315187 389 +    430880 CCCCAGTCCCACAAGGAGCTTGGATGTGCGGACAAGCAGGGTGGTGAGTAGAGCCCTCAGGCGGGGTGGGCAGGCAGGAGCAGGGGAGGCTCGCACTGTGCCCAGATTCCCA-CCCCCTCCCTCTCTCTG-------AAGATCTTAGTGAGCTGAGCCT------CACTGATAGCATGGAGGCTGCACCGGGACAGGACAGGGAGGGTTC---TCCCCCATGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTCCTCTAATGCAGGACTCCCCAGGAGCACCCAGGCTTGGGTGGAGAAGCTGTTGGTACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGCATGCCATTCTTTT--CGGGCTGCCGAGAACAGGGAGCTAAACATCACCATCATCTAAGAGC
s ponAbe2.chr15_random       10103664 381 +  10928107 CCCTAATCTCACA-GGAGCTTGGGTGTGCAGACAAGCAGGGTGGTGAGTAGAGCCCTCAGGCGGGGTGGGCAGGCAGGAGCAGGGGAGGCTCGCACTGTGTTCAGATTCCCA-CCCCCACCCC------G-------AAGATCTTTGTGAGGTGAGCCT------CACTGATAGCGTGGAGGCTGCACCAGGAGAGGACAGGGAGGGTTC---TCCCC-ATGAGAACCCCACTGCGCAGCAGATCCAGCAGCTGCTTCCTCTAACGCAGGACTCCCCAGGAGCACCCAGGCTTGGGTGGAGAAGCTGTTGGTACAGGAGAGGCGGCACGAGGAGCAGGAGAGGCTGCATGCCATTCTTTT--CGGGCTGCCAAGAACAGGGAGATAAACATCACCATCATCTGAGAGC
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7              108395334 345 - 171882078 CCCGAATCCCCCA-GGAGCTTGGGTGTGCTGACAAGCAGGGTGGTGGGTAGAGCGCTCAGGCGGGGTGGGCGGGCAGGAGCAGGGGAGGCTCGCACTGACCTCAGATCC----CCTCCTCCCTCTGTCTG-------AAGATCTTCGTG-GCTGAGCCT------CACTGACAGCGTGGAGCCTGCACCAGGAGAGGCCAGAGAGGGTTC---TCCCC-ACCACAACCCCACGGCACAGCAGATCGTGCAGCTGCTTCCTCTAACGCAGGACTCTCCAGGAGCACCGAGGCTTGC--------------------------------------GCAGCAACCCCTGCATGCCATTCTTTT--CACCGTGCCGAGATCAGGGAGATAAACATCACTATCATCTAAGAGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              79800 345 +    130206 CCCCAATCCCCCA-GGAGCTTGGGTGTGCTGACAAGCAGGGTGGTGGGTAGAGCGCTCAGGCGGGATGGGCGGGCAGGAGCAGGGGAGGCTCACACTGACCTCAgatcc----cctcctccctctgtctg-------AAGATCTTCGTG-GCTGAGCCT------CACTGACAGCGTGGAGCCTGCACCaggagaggccagggagggtTC---TCCCC-ACGACAACCCCACGGCACAGCAGATGGTGCAGCTGCTTCCTCTAACGCAGGACTCTCCAGGAGCACCGAGGCTTGG--------------------------------------GCAGCAACCCCTGCATGCCATTGTTTT--CACCGTGCTGAGATCAGGGAGATAAACATCACCATCATCTAAGAGC
i papAnu2.JH685126          C 0 C 0
s canFam3.chr9               55250603 355 +  61074082 CCCCAG---CCCA-AGAGCTTGGTGCTGCCAATGGCCAGGGTGGTGAGTAGAGCCCTCAGGGTGGGTGGG---------GCGGGGAGAGCTCGCACAGCACTCAGAGCCCTGTTTCTTTCTCTCTCCCTGACCCACAAAGATCTTCGAGAGGTGAGCCTGGCTGACAATGATAATGTGGCACCTCCTCAGGGAGAGGCCCTACCAGGCCACAGTGCCC-CTGAGAACCCCACTGCACAGCAAATCATGCAGCTTCTGCAGGAGATGCAGAA-TCCCCAGCCATACCTAGGTTTAA--------------------------------------GCAAGAATCCCTGCGTCCCCTTCTTCTACCGGGCTGATGACAATGACGAGGTGAAGATCCTGGTGATCTAAGAGC
i canFam3.chr9              I 1663 I 16
e calJac3.chr10             114305364 247 - 132174527 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=72920.000000
s hg38.chr15_KI270850v1_alt    315576 195 +    430880 GGGTCAAGGAATTAAAAAA-AAACAACAAAACGTTTAAGGGGTTAATATCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTTATGTTTATTTGTGtttctaattta-------aatttatttgt--ttctaatttatagtttaaatttatttgtaaaAAGTTAAATGAGAGTGGGTCTTTCTCTCATGTTCACTCT
s ponAbe2.chr15_random       10104045 197 +  10928107 TGGTCAAGAAATTTAAAAA-AAATA-------TGTTAAGGGGTTAATCTCCTACACAATTCATTTACTTTATTTGAATGTTAGAGCCACTTATGTTTATTTGTGTTTCTAATTTATAGTTTAAATTTATTTGTGTTTCTAAATTATAGTTTAAATTTATTTGTAAAAAGTTAAAGGAGAGTGGGTCTTTCCCTCATGTTCACTCT
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7              108395679 166 - 171882078 TGGTCAAGAAATTTAAAAACAAACG--AAAAAAGTTTAGGGGTTAATCTCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTCATGTTTATTTGTGTTTCTAACTTA-------------------------------------AATTTATTTGTAGAAAGTTAAAGGAGAGTGGGTCTTTCCCTCATGTTCACTCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              80145 166 +    130206 Tggtcaagaaatttaaaaacaaaca--aacaaagtttaGGGGTTAATCTCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTcatgtttatttgtgtttctaactta-------------------------------------aatttatttgtagaaaGTTAAAGGAGAGTGGGTCTTTCCCTCATGTTCACTCT
i papAnu2.JH685126          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55250958  16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e panTro4.chr15              80098038 837 +  99548318 I

a score=40533.000000
s hg38.chr15_KI270850v1_alt    315771 466 +    430880 GGCATCCTTTAGCATTTTTTAAATTTGATAATTATAGGACGTTAGCATGCATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACGCACTGTATGCACACAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGCTTTTTAAATGTTAGTACAGCATGTATATTCATTACGGAATTCAGATAAAATTTCCTTATGTTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATTAGCTCAATATGTGGTTTGCCCTCAAGTGCGCGGTCTATTACTTTGTAATATGCCACTGTGAGTACTGACATTTACAGTTGTTTAAAGGTGGAGCACTGGAAACAGCCTTTTCCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTCTGGCAGGTGTGTGCAGG
s ponAbe2.chr15_random       10104242 465 +  10928107 GGCATCCTTTAGCATTTTTTTAATTTGATAATTATAGGACGTTAGCATGCATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAAGACACAAAGACCCACTATATGCACACAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGCTTTTTTAATGTTAGTGCAGCATGTATATTCATTATGGAATTGAGATAAAATTTGCTTATGTTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATTAGGTCAATATGTGGTTTGCCCTCAAGTACGCAGTCTATTACTTTGTAATATGCCGCTGTGAGTACTGACATTTACAGTTGCTTAAAGGCGGAGCACTGGAAACAGCCTTTCCCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATCCCCCAG-AGAGGAAAGTGGTCTGTTCTGGCAGGTGTGTGCAGG
i ponAbe2.chr15_random      C 0 M 987
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55250958  16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e papAnu2.JH685126              80311   0 +    130206 C
e macFas5.chr7              108395845   0 - 171882078 C
e panTro4.chr15              80098038 837 +  99548318 I

a score=0.000000
s hg38.chr15_KI270850v1_alt    316237 133 +    430880 ATAGAATATGTTTCATTTGTTCTGGTGCCAAGAATGAGCGCTGTACTATGGTAGTTCCCTTAGGATTTGCATGTGCTCTGGGCTCATGAAGACATTGCATCATGAGCTGTGGCAGTTGTACTTTTTTTTGATG
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55250958  16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e papAnu2.JH685126              80311   0 +    130206 C
e macFas5.chr7              108395845   0 - 171882078 C
e ponAbe2.chr15_random       10104707 987 +  10928107 M
e panTro4.chr15              80098038 837 +  99548318 I

a score=52831.000000
s hg38.chr15_KI270850v1_alt    316370 673 +    430880 ACCTAAAAGGGGATTATTTCTGAGGAATGAAAGGCTCCCATCATGACTGTGGATGTGGAAAACCTTTTCTAGCTGAGAGCATTTATATCTACAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTAATCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGTTGGCATTCTCCTTAATGTATTCAGTAAAGATCAGAAGAAATCCTTTAAGAGTTTAAATGTCCCTGAAACAGGCATATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTTACACCTGGCATTCCTCTGTGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATAGCTAGTCTTCAACCATCTGACAGAGGAATT-----CTTTTTCTTGAATGGAAAAGGCTTTAAAAATAATAACAAACATTATTATAAACAAATATATGTGAGAGTACTTAGTTGAAACAAAAAGGAATTTTAGTAGACAGTATTATACTACATTTGAAAATCAAGGAGCAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTCATGAGGAAA-GTGTCTATACAATCACGGAGTTATATTTCCTCACAAAGTTCTTTACGAAGAGTGAAATATG
s nomLeu3.chr6               17178247 649 - 121039945 ACCTAAAAAGGGATTATTTCTGAGGAATGAAAGGCTCCCATCATGACTGTGGATGTGGAAAACCTTTTCTAGCTTAGAGCATTTGTATCTACAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTATTCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGTTGGCATTCTTCGTGATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAGTTTAAATGTCCCTGGAACAGGCATA--CAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTATTTGAGGCTGGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATGCCTAGTCTTCAACCATCTGACATAGGAATTTACTTCTTCTCCTTGAATGGAAACA-CTTTAAAAATAATAAGAAATGTTATTATAAACTAATATATGTGAGAGTACTTAGTTGAAACAAAAAG---TTTTAG------------------------AAATCAAGGAGAAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTTATGAGGAAAAGTGTCTATACAATTACAGAGTTATATTTCCTCACAAAGTTCTTTACGAAGAGTGAAATATG
i nomLeu3.chr6              N 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55250958  16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e papAnu2.JH685126              80311   0 +    130206 C
e macFas5.chr7              108395845   0 - 171882078 C
e ponAbe2.chr15_random       10104707 987 +  10928107 M
e panTro4.chr15              80098038 837 +  99548318 I

a score=90793.000000
s hg38.chr15_KI270850v1_alt    317043 462 +    430880 TTTTTATACCTTTTGGTTTCAGTTAGAGGC--ATATTTTGTGTAATATTTATGTTAATGTG------CATGATCAATGAATT------ATTTCAGTCATATGTTGCCTATATCATAA-CTGGAGGATGCTTGGGGAACAATCAACAGCTAAAACTT-CATGAAGTTCTAATGTCTGTGT-TCCAAAATACATCATATCATTAGGATGTAGGGAGAGATGTATCTGCACTCCCTGGGGTGGGC-ATTTCTAGTTACTAGACCATCTCCACTTTTAGCATTGGGCATCCTCATGATACTTTTATAAATATGACATTAATAGGAGATCAATAATACGATTTTACAGATTGAATAAGAGAATTGCCTGCATTCACTTAAAGATTGCAAATATTGAGCCCTTGTGACTTCAACTGACTCTTCCAAATTGTATGAATTTATCAATGTATTAGAGAAACTCAGTTTCAGAATGATAAAGAAAAACTG
s nomLeu3.chr6               17178896 462 - 121039945 TTTTTATACCTCTCGGTTTCAGCTACAGGC--ATATTTTGTGTAATATTTATGTTAATGTG------CATGATCAATGAATT------ATTTCAGTCATGTGTTGCCTAAATCATAA-CTGGATGATGCTTGGGAAAGAATCAACAGCTAAAACTT-CATGAAGTTCTAATGTCTGTGT-TCCAAAATACATCATATCATTAGGATGTAGGGAGAGATGTATCTGCACTCCCTGGGGTGGGC-ATTTCTAGTTACTAGACCATCTCCATTTTTAGCATTTGGCATCCTCATGATACTTTTATAAATATGACATTAATAGGAGATCAATAATAGGATTTTACAGATTGAATAAGAGAATTGCCTGCATTCACTGAAAGAGTGCAAATATTGAGCCCTTGTGACTTCAACTGACTCTTCCAAATTGTATGAATTTATCAATGTATTAGGTAAACTCAGTTTCAGAATGATAAAGAAAAACTG
i nomLeu3.chr6              C 0 M 100
s calJac3.chr10             114305611 477 - 132174527 TTTTTATACCTTTCAGTCTCAGTTAGAGGTCACCATTTTGTGCAAAGATTATGGTAATGTGTCTTTACATTATGAATGAATTTCTTTCAGTTCAGTCA-GTCTTGCATAAATCATAACCTTTATGATGC-TGGGACAGAATCAACAGTTGAAACTTCCAAGAAGTTCTAATGTCCATGTACCCAAAATATGTCCCATTGTTAGGATGGAGGGAGATATGCAGGTGTGCTCCCTGAAGGGGGAGATTCCTAGTTACT-GACCATCTCCACATTTAGCATTTGGCATCTTCATGATACTTTCATAAATATGGCATTAATAGGAGAGCACTCATACAATTTGACAGATGGAATAACACATTTGCCTGCATTCCCTGAAAGAGTACAAATATTGGGTCCTGGTGATTTGAACTGACTCTTCCAAATTGTAGGGATTTATCAATGTATCAGATAAACCCAGTTTCAGAACGATCAAGGAGAAACG
i calJac3.chr10             I 247 C 0
e canFam3.chr9               55250958  16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e papAnu2.JH685126              80311   0 +    130206 C
e macFas5.chr7              108395845   0 - 171882078 C
e ponAbe2.chr15_random       10104707 987 +  10928107 M
e panTro4.chr15              80098038 837 +  99548318 I

a score=4813.000000
s hg38.chr15_KI270850v1_alt    317505 72 +    430880 TTAGACCAAGCAATGTGGCTAATTAACAGTGGTAGGATTTCCAGCCCAAGGGTTTAAAATGGACTTAAGGTC
s calJac3.chr10             114306088 71 - 132174527 TTAGACCAAATAATGCGGCTAATTAACAGTGGCATGATTTCTAGCC-GGGGGCTTAAAATGGACTTAAAGTT
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55250958 16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e papAnu2.JH685126              80311  0 +    130206 C
e macFas5.chr7              108395845  0 - 171882078 C
e nomLeu3.chr6               17179358 100 - 121039945 M
e ponAbe2.chr15_random       10104707 987 +  10928107 M
e panTro4.chr15              80098038 837 +  99548318 I

a score=2758.000000
s hg38.chr15_KI270850v1_alt    317577 16 +    430880 CTGTTCTTGCCTTTTA
s panTro4.chr15              80098875 16 +  99548318 CTGTTCTTGCCTTTTA
i panTro4.chr15             I 837 C 0
s calJac3.chr10             114306159 15 - 132174527 CTGTT-TTGTGTTTTA
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55250958 16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e papAnu2.JH685126              80311  0 +    130206 C
e macFas5.chr7              108395845  0 - 171882078 C
e nomLeu3.chr6               17179358 100 - 121039945 M
e ponAbe2.chr15_random       10104707 987 +  10928107 M

a score=38350.000000
s hg38.chr15_KI270850v1_alt    317593 73 +    430880 TTTTCTGAACTTGCTGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTCCTTTAAGTCCATTTTAAACCC
s panTro4.chr15              80098891 73 +  99548318 TTTTCTGAACTTGCTGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTACTTTAAGTCCATTTTAAACCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10105694 73 +  10928107 TTTTCTGAACTTGCCGCTTTTGCATTCTCTGAGTTCAGTTTAAAGACAGTTACTTTAAGTCCATTTTAAACCC
i ponAbe2.chr15_random      M 987 C 0
s calJac3.chr10             114306174 72 - 132174527 -TTTCTGAACTTGCCGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTACTCTAAGTCCATTTTCAACCC
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55250958 16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e papAnu2.JH685126              80311  0 +    130206 C
e macFas5.chr7              108395845  0 - 171882078 C
e nomLeu3.chr6               17179358 100 - 121039945 M

a score=91091.000000
s hg38.chr15_KI270850v1_alt    317666 110 +    430880 TCAGGCTAGAAGTCATACCACTGTTAATTAGCCACATTATTTGATCTAACAGTTTTTCTTTATCATTCTGAAACTGGGTTTACCGAATACATTGATAAATTATTTCAAAG
s panTro4.chr15              80098964 110 +  99548318 TCAGGCTAGAAGTCGTACCACTGTTAATTAGCCACATTATTTGATCTAAGAGTTTTTCTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTCAAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10105767 110 +  10928107 TCGGGCTAGAAATCGTACCACTGTTAATTAGCCACATTATTTGGTCTAACAGTTTTTCTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTCAAAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17179458 110 - 121039945 TCGGGCTACAAATCCTACCACTGTTAATTAGCCACATTATTTGGTCTAACAGTTTTTCTTTATCATTCTGAAACTGGATTTACCTAATAGATTGACAAATTATTTCAAGG
i nomLeu3.chr6              M 100 C 0
s calJac3.chr10             114306246 110 - 132174527 TCGGGCTAGAAATCGTACCCCTGTTAATCAGCCACATTATTTTGTCTAACAGTTTTTCTTAATCATTCTGAAACTGGGTTTATCTAATACATTGATAAATTATTTCAAAG
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55250958  16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e papAnu2.JH685126              80311   0 +    130206 C
e macFas5.chr7              108395845   0 - 171882078 C

a score=28627.000000
s hg38.chr15_KI270850v1_alt    317776 18 +    430880 GTATTTTTATAGTTCAAA
s panTro4.chr15              80099074 18 +  99548318 GTATTTTTATAGTTCAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10105877 18 +  10928107 GTATTTTTATGGTTCAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17179568 18 - 121039945 GTATTTTTATAGTTCAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108395845 18 - 171882078 GTATTTTGACAGTTCAAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              80311 18 +    130206 GTATTTTGACAGTTCAAA
i papAnu2.JH685126          C 0 C 0
s calJac3.chr10             114306356 18 - 132174527 GGATTTTGATAGTTCAAA
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55250958 16 +  61074082 I
e chlSab2.chr29              21083325 1383 -  24206276 I

a score=471595.000000
s hg38.chr15_KI270850v1_alt    317794 218 +    430880 TCACTTCACTTTTACCCTGACACGTATAAATGACTAGGAATGACCTTCGGATAGCGTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACAGGCATATTTAAGCTGAACGTCAGTCTGAAAAATAAATGTACTA-TATTAACTGAAATACCACTCTTCATGTAGGTATTTTGTCATATGTTTAAGAAA
s panTro4.chr15              80099092 219 +  99548318 TCACTTCACTTTTACCCTGACACGTATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTACTAATATTAACTCAAATACCACTCTTTATGTAGGTATTTTGTCATATGTTTAAGAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10105895 218 +  10928107 TCACTTCACTTTTACCCTGACACGTATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACGGGCATATTTAAGGTGAATGTCAGTCTGAAAAATAAATGTACTA-TATTAACTGAAATACCACTCTTTGTGTAGGTATTTTGTCATATGTTTAAGAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17179586 213 - 121039945 TCACTTCACTTTTACCCTGACACATATAAATGACTAGGAATGACCTTCAGATAGCCTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACGGGCATATTTAAGCTCAATGTCAGTTTGAA----AAATGTACTA-TATTAACTGAAATACCACTCTTTGTGTAGGTATTTTGTCATATGTTTAA-AAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108395863 217 - 171882078 TCACTTCACTTTTA-CCTGACACATATAAATGACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGTAACCTATCTGACAATAATGTGTTCATCAGGGACCTCTGGATTAAATCACATACCGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAAAGTGCTA-TATTAACTGAAATACCACTCTTTGTGTAGGAATTTTGTCATATGTTTAAGAAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              80329 217 +    130206 TCACTTCACTTTTA-CCTGACACATATAAATGACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGGAACCTATCTGACAATAATGTGTTCATCAGGGACCTCTGGATTAAATAACATACCAGCATATTTAAGCTGAATGtcagtctgaaaaataaaagtgcta-tATTAACTGAAATACCACTCTTTGTGTAGGAATTTTGTCATATGtttaagaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21084708 217 -  24206276 TCACTTCACTTTTA-CCTGACACATATAAATGACGAGGAATGACCTTCAGATAGTGTTTAGCATCTGTAACCTATCCGACAATAATGTGTTCATCAGAGACCTCTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTGCTA-TATTAACTGAAATACCACTCTTTGTGTAGGAATTTTGTCATATGTTTAAGAAA
i chlSab2.chr29             I 1383 C 0
s calJac3.chr10             114306374 214 - 132174527 TCACTTCACTTTAACCCTAAGAAATACAAATTACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGTACCCAATCTGATGATAACGTGTTCATCAGGTACCTGTGCAGTAAATCCCATACAGGCATGTTTAAGCTGAATGGCAGTCTGGAAAATACATTTAC---TATTAACCGAAATATCACTCT--GAGTAGGTATTTTGTCATCTATTTAAGAAA
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55250958  16 +  61074082 I

a score=2002076.000000
s hg38.chr15_KI270850v1_alt    318012 726 +    430880 AAGCTAAAAAGAATGGAAATCATGTGACAATAACTTAAGTCTTCCTTCAAAGTGCATGC-AGTCTTTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCATCAGAAACA--GAATTT-------------------TAAAATATGAGTTCAACTGAATAAATGTGAATTTCTGTAGGAAGTAAAGAATCAAAATACCTATCTAAAGATGGCAATATATAATAATTATTTTTAAAGTATTTGATTAAACCAGATAGGTTTTCTCGAAATG-AA-AAAAATCAGTTCTAAAACCAAAGATGATTTTTTGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATATAATTTCTCTAAAACTGTATCT------GTCATTTTAAAATAATATAACTATTAAAAAATGTAACTGCTATCTTATTGTTTTGAAATAAGTTAAAACATTT-TAAATATGAATACTGCAGTTTAAAAGAAAGAAACCAGGGGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttacctatttatgaattcttacaaaca--gaatgtataatggaaatactgact--------------------tttgcctaaagtggcATTGTTGACTGCTGT---GATGTTA-------CTGTAATGTAATAAATTATTAAATTGTTGCAAAGTGCTGTTTTTGCCT
s panTro4.chr15              80099311 723 +  99548318 AAGCTAAAAAGAATGGAAATCATGTGACAATAACTTATGTCTTTCTTCAAAGTGCATGC-GGTCCTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCATCAGAAACG--GAATTT-------------------TAAAATATGAGTTCAACTGAATAAATGTGAATTTCTATAGGAAGTAAAGAATCAAAATACCTATCTAAAGATGGCaatatataataattatttttaaaGTATTTGATTAAACCGGATAGGTTTTCTCGAAATG-AA-AAAAATCAGTTCTAAAACCAAAGATGATTTTTTGAAAATGTGAAAATGTAAACCAG-----CCCTATCCATAATATAATTTCTCTAAAACTGTATCT------GTCATTTTAAAATAATATAACTGTTAAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTT-TAAATATGAATACTGCAGTTTAAAAGAAAGAAACCAGGGGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCTATTTATGAATTCTTACAAACA--GAATGTATAATGGAAATACTGACT--------------------TTTGCCTAAAGTGGCATTGTTGACTGCTGT---GATGTTA-------CTGTAATGTAATAAATTA---AATTGTTGCAAAGTGCTGTTTTTGCCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10106113 720 +  10928107 AAGCTAAAAAGAATGGAAATCGTGTGACAATAACTTAAGTCTTCCTTCAAAGTGCATGC-AGTCTTTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCATCAGAAACA--GAATTT-------------------TAAAATGTGAGTTCAACTGAATAAATGTGAATTTTTGTAGG-----AAGAATCAAAATACCTATCTAAAGACTGCAATAT---ATAATTATTTTTAAAGTATTTGATTAAACCTGATAGGTTTTCTCAAAATG-AA-AATAATCAGTTCTAAAAGCAAAGCTAGTTTTTTGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATATAATTTCTCTAAAACTTTATCTT----AGTCattttaaaataatataactattaaaaaatGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTT-TAAATATGAACACTGTAGTTTAAAAGAAAGAAACCAGGTGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCTATTTATGAATTCTTACAAACA--GAATGTATAATGGAAATACTGACT--------------------TTTGCCTAAAGTGGCATTGTTGACTGCTGT---GATGTTA-------CTGTAATGTAATAAATTATTAAATTGTTGCAAAGTGCTGTTTTTGCCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17179799 728 - 121039945 AAGCTAAAGAGAACGGAAATCGTGTGACAATAACTTAAGTCTTTCTTCAAAGTGCATGC-AGTCTTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTAAAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGATTAGAGATCATCAGAAACA--GAATTT-------------------TAAAATGTGAGTTTAACTGAATAAATGTGAATTTCTGTAGGAAGTAAAGAATCAAAACACCTATCTAAAGACTGCAATATAGGATAATTATTTTTAAAGTATTTGATTAAACCTGATAGGTTTTCTCGAAATG-AA-AAAAATCAGTTCTAAAACCAAAGGTAATTTTTTGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATATAATTTCTCTAAAACTTTATCTT----AGTCATTTTAAAATAATATAACCATTCAAAAATGTAACTGCTATCTTCATGTTTTGAAATAAGTTAAAACATTT-TAAATATGAATACTGTAGTTTAAAAGAAAGAAACCAGGGGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCTATTTATGAATTCTTACAAACA--GAATGTATAATGGAAATACTGACT--------------------TTTGCCTAAAGTGGCATTGTTGACTGCTGT---GATGTTA-------CTGTAATGTAATAAATTATTAAATTGTTGCAAAGTGCTGTTTTTGCCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106662267 765 - 170124641 AAGCTAAAAAGAATGGAAATTCTATGATAATAACTTTAGTCTTTCTTCAAAGTGCATGC-AGTCGTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTAATCAGAAACAT-AAAATCCATCAGAAACATAGAATTTTAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGCAATATATGATAATCATTTTTAAAGTATTTGATTAAACTT--TAGGTTTTCCAGAAATGAAA-AAAAATCAATTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTTATGTT----AGTCATTTTTAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTT-TAAATATGAATACTATAGTTTAAAAAAAAGAAACTAGGGGAAGGAAAAGTAGAGAAAGAAACGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCAATTTATGAATTCTTATAAACATTGAATATAT-ATGGAAATACTGAAACATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---GATGTTACTGTAACCTGTAATGTAATAAATTCTTAAATTGTTGCAAAGTGCTGTTTTTGCCT
i rheMac3.chr7              N 0 C 0
s macFas5.chr7              108396080 738 - 171882078 AAGCTAAAAAGAATGGAAATTCTATGACAATAACTTTAGTCTTTCTTCAAAGTGCATGC-AGTTGTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTAATCAGAAACAT-AAAATC-------------------TAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGCAATATATGATAATCATTTTTAAAGTATTTGATTAAACTT--TAGGTTTTCCAGAAATG-AA-AAAAATCAATTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTTATGTT----AGTCATTTTTAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTT-TAAATATGAATACTATAGTTTAAAAAAAAGAAACTAGGGGAAGGAAAAGTAGAGaaagaaacgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttataaacattgaatatat-atggaaatactgaATCATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---AATGTTA-------CTGTAATGTAATAAATTATTAAATTGTTGCAAAGTGTTGTTTTTGCCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              80546 738 +    130206 aagctaaaaagaatggaaattctATGACAATAACTTTAGTCTTTCTTCAAAGTGCATGC-AGTCGTTTGCAACACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTAATCAGAAACAT-AAAATC-------------------TAAAATGTGAGTTCAACtgaataaatttgaatttctgtagG-----AAGAATCAAAATACCTATTTAAAGATTGCAATATAtgataatcatttttaaagtatttgattaAACTT--TAggttttccagaaatg-aa-aaaaatcaattctaaaaCCAAAgctgatttttagaaaatgtgaaaatgtaaatCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTTATgtt----agtcattttaaa-----ataactattcaaAAATGTAACTGCTATcttaatgttttgaaataagttaaaacattt-taaatatgaatactatagtttaaaaaaaagaaactaggggaaggaaaagtagagaaagaaatgcCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCAATTTATGAATTCTTATAAACATAGAATATAT-ATGGAAATACTGAATCCTATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCCGC---GATGTTA-------CTGtaatgtaataaattattaaattgttgCAAAGTGTTGTTTTTGCCT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21084925 738 -  24206276 AAGCTAAAAAGAATGGAAATCCTATGACAATAACTTAAGTCTTTTTTCAAAGTGCATGC-AGTCGTTTGCAATACCTCATTCAGCCAACTATTTGTTCTCTTCCTCATTCAGTATTAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTAATCAGAAACAT-AAAATC-------------------TAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGTAATATATGATAATCATTTTTAAAGTATTTGATTAAACTT--TAGGTTTTCCAGAAATG-AA-AAAAATCAATTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTGATGTT----AGTCATTTTTAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTT-TAAATATGAATACTATAGTTTAAAAAAAAGAAACTAGGGGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCAATTTATGAATTCTTATAAACATAGAATATAT-ATAGAAATACTGAATCATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---GATGTTA-------CTGTAATGTAATAAATTATTAAATTGTTGCAAAGTGTTGTTTTTGCCT
i chlSab2.chr29             C 0 I 340
s calJac3.chr10             114306588 727 - 132174527 -AATCTAAAAGAACGGAAATCACATGACAGTGACTTAAGTCTTTCTTCAAAGTGCACGTGAGTCTCCTGAAGTACTTCATTCAGCCAAGTGTCTGTTCTCTTCCTCATTCAGTAGAAGGCAGCTTTCAATTGGCTTAGAAGGCAACATCAGAAGGTTAGCGTTCATCAAAAACACAGAATTT-------------------TAAAATGTGTGTTCAACTGACCAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTGTTTAAAGATTGCAATATATGATAATCATTTTTAAAGGATTTTATTAAACCTGATAGGTTTTCCAGAAATG-AATAAAACTCAGTTCTAAAAACAACGCTGATTTTTAGAAAATTTGAAAATGTAAATCAGTCCTATCCTATCCACAATATAGTTTCTCTAAAACTTTATCTTAAAGAGttattttaaa-----ataactatttaaaaa-ataaCTGCTCTCTTAATGTTTTGAAATTACTTAAAACATTTAAAAATATGAATATTGCAGTTTAGAAGAAATA----GGGGGAAGGAAAAGT----GAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTAAGAATGACTTTTACCACTGTATGAACTCCTGTGAACA--GAATGTAAGATGGAAATCCTGAGCCT------------------TTTGTCTAAAGCGGCAATACTGACTGCTGCTGTGATGCTC-------CTGTGATGTAATAAATTATTCAGTTGCTGCAAAGTGCTGTTTCTGCCT
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55250958  16 +  61074082 I

a score=772279.000000
s hg38.chr15_KI270850v1_alt    318738 307 +    430880 TAAAATTTCGTGTGTCTTGAAAACTACAGTATTAAA--TACTATAGCATGCAAATAATGGGCATGCTTGGCATGAGATAATCTGTTTTTATTGTTACAAAATTG-----TAACTATGTAAGTGTGTTTATTAAAAGA--ACAAAC-----AA----------------AGTTATGGGATGAAAGAGTTACGGGATAAAAAATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG--AAAAAATTGTATGAAAAGTTA-TTTAAAAAGTTATGGAAAAGAAGTTATGGGATT---AAAAAAAGTCACGGGATATAAATAAAAATAAATAAAAGCAGGCCCCTTCCAGCAT
s panTro4.chr15              80100034 307 +  99548318 TAAAATTTCATATGTCTTGAGAACTACAGTATTAAA--TACTATAGCATGCAAATAATGGGCACGCTTGGCATGAGATAATCTGTTTTTATTGTTACAAAATTG-----TAACTATGTAAGTGTGTTTATTAAAAGA--ACAAAC-----AA----------------AGTTATGGGATGAAAGAGTTACGGGATAAAAAATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG--AAAAAATTGTATGAAAAGTTA-TTTAAAAAGTTATGGAAAAGAAGTTATGGGATT---AAAAAAAGTCACGGGatataaataaaaataaataaaaGCAGGCCCCTTCCAGCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10106833 301 +  10928107 TAAAATTT--TGTGTCTTGAAAACTATAGTATTAAA--TACTATAGCGTGCAAATAATGGGCATA------ATGAGATAATCTGTTTTTATTTTTACAAAATTG-----TAACTATGTAAGTGTGTTTATTAAAAGA--AAAAAC-----AA----------------AGTTATGGGATGAAAGAGTTATGGGATAAAAAATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG--aaaaagttatatgaaaagtta-tttaaaaagttatGAAAAAGACGTTATGGGATT-AAAAAAAAAGTCATGGGATATAAACAAAAATAAATAAAAGCAGGCCCCTTTCAGCAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17180527 304 - 121039945 TAAAATTTTGTGTGTCTTGAAAACTATAGTATTAAA--TACTATAGCGTGCAAACAATGGGCATGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTG-----TAACTATATAAGTGTGTTTATTAAAAG------AAC-----AA----------------AGTTATGGGATGAAAGAGTTATGGGATAAAAAATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG--AAAAAA--GTATGAAAAGTTA-TTTAAAAAGTTATGAAAAAGAAGTTATGGGATTAAAAAAAAAAGCCACGGGATATAAATAAAAATAAATAAAAGCAGGCCCCTGTCAGCAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106663032 314 - 170124641 TAAAATTTTGTGTGTCTTGAAAACTGTAGTATTAAA--TACTATAGCGTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTA-----TAACTATGTAAGTGTGTTTATTAAAAGA--ACAAAC---TAAA----------------AGTTATGGGATGAAAGAGTTATGGGGCAAAACATGTGGAAAAG-TGTGTCAAA--------------AAAAAGTAGAAAAAAAGTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAAGAAGTTATGGTA--TAACAAAAAAGTCACAGGatataaataaaaataaataaaaGCAGGCCCCTGTCAGCAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108396818 314 - 171882078 TAAAATTGTGTGTGTCTTGAAAACTATAGTATTAAA--TACTATAGCGTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTA-----TAACTATGTAAGTGTGTTTATTAAAAGA--ACAAAC---TAAA----------------AGTTATGGGATGAAAGAGTTATGGGGCAAAACATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAGAAAAAAAGTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAAGAAGTTATGGTA-TTAAAAAAAAAGTCACAGGATATAAATAAAAATAAATAAAAGCAGGCCCCTGTCAGCAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              81284 325 +    130206 TAAAATTGTGTGTGTCTTGAAAACTATAGTATTAAA--TACTATAGAGTGCAAATACTGGGCACGCTTGGCATgagata---tgtttttatttttacaaaattg-----taaCTATGTAAGTGTGTTTattaaaaga--acaaac---taaaattTATGGGATGAAAGAGTTATGGGATGAAAGAGTTATGGGGCaaaac--gtggaaaag-tgtgtc-aa--------------aaaaagtag-aaaaaagttttatgaaaagttattttaaaaagttatgaaaaagaagttatggtatttaaaaaaaaagtcacaggatataaataaaaataaataaaagcaggccCCTGTCAGCAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21086003 327 -  24206276 taaaatTATGTGTGTCTTGAAAACTATAGTATTAAA--TACTATAGCGTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTG-----TAACTATGTAAGTGTGTTTATTAAAAGA--ACAAAC---TAAAAGTTATGGGATGAAAGAGTTATGGGATGAAAGAGTTATGGGGCAAAAC--GTGGAAAAG-TGTGTC--A--------------AAAAAGTAG-AAAAAAGTTTTATGAAAAGTTATTTTTAAAAGTTATGAAAAAGAAGTTATGGTATTAAAAAAAAAAGTCACAGGATATAAATAAAAATAAATAAAAGCAGGCCCCTGTCAGCAT
i chlSab2.chr29             I 340 C 0
s calJac3.chr10             114307315 346 - 132174527 TAAAATTTTGTGCATCTTGACAGCTGTAGTATTAAAGGTATTG-AGACTGCAAACACTGGGCACACTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTGTAATATAACTATGCAAGTGTGTTTATTAAAAGAACACAAACTAATAAAATTTATGGGATTAAA-AGTTATGGGATAAAAAAGTCATCGGATAAAAA--ATGGAAAAGTTGTGGC-AAAAAGCATTGTGGATAAAAAGTAG---AAAAATTTTATGAAAAGTTA----TAAATGTTATGAAAAGGAAATTATGAGATTTTCTTTTTAAGTCATGGGATAGAAATAAAAATAAATAACAGCAGGCTTCTGTCAGCA-
i calJac3.chr10             C 0 C 0
e canFam3.chr9               55250958  16 +  61074082 I

a score=1957277.000000
s hg38.chr15_KI270850v1_alt    319045 648 +    430880 AAGCCTGGAGAAGTGGG-TCTGGACTCTCCGCCCCCACCATGTCCCTACCACC--------CCTTCCCAGTCA-----GCCCTTTACCATTAGGGTAG-----CAAGACCCCTG-------------------TCTAAT-GGGGGGAGA----------CAGACCCTTTGCCACCTTGACCAGGGCTGAGTCCTTAAATTTCTGGACGATGATGCTTGTTATTT----------AAGAGCCAGAGGCT---GGTGGAGTTGGTTTGTTTGGAGT-------------------AGG-----CCT------GATGGCCTCTCTACTCTTGCCAAAGCAACTTTTCCCTCAGGGGAGCTCC--CATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAGGCAGGACAG-TGGGGCTAACAGTAGACCAGGCAAGGGCATGGGCTGCT-GGGGTGACCCCCCCTTCCCCAGTGTATATATTGTATCTGCGTAACATTTTGTATATTCTGGGGAGTGGGGCTG-CCCCTGTATCGTACCTAGTGGAGGTTGGAGCTGGCATATAGGGAGGAGGATCTAATAATTATTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACATAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGCGACTCCTGTTTATTTTGCTTTTCATTTTGGAATAAATGGATTTAGCCATACTGCTCAGCCTGGTGTGTTCCCGTTTCCT-TCACTGGGTCC-------
s panTro4.chr15              80100341 639 +  99548318 AAGCCTGGAGAAGTGGG-TCTGGACTCTCCGCCCCCACCATGTCCCTACCACC--------CCTTCCCAGTCA-----CCTCTTTACCATTAGGGTAG-----CAAGACCCCTG-------------------TCTAAT-GGGGGGAGA----------CAGACCCTTTGCCACCTTGACCAGGGCTGAGTCCTTAAATTTCTGGACGATGATGCTTGTTATTT----------AAGAGCCAGAGGCT---GGTGGAGTTGGTTTGTTTGGAGT-------------------AGG-----CCT------GATGGCCTCTCTACTCTTGCCAAAGCAACTTTTCCCTCAGGGGAGCTCC--CATCTTCTTATTCCCAG-------------------------------------------AGGCAG------------------GACAG-TGAGGCTTTTTTTAGACCAGGCAAGGGCATGCGCTGCT-GGGGTGACCCCCCCTTCCCCAGTGTATATATTGTATCTGCATAACATTTTGTATATTCTGGGGAGTGGGGCTG-CCCCTGTATCGTACCTAGTGGAGGTTGGAGCTGGCATATGGGGAGGAGGATCTAACAATTATTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGCGACTCCTGTTTATTTTGCTTTTCATTTTGGAATAAATGGATTTAGCCATACTGCTCAGCCTGGTGTGTTCCCGTTTCCT-TCACTGGGTCC-------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10107134 653 +  10928107 AAGCCTGGAGAAGTGGG-TCTGGAGTCTCCGCCTCCACCATGTCCCTATCACC--------CCTTCCCAGTCA-----CCCCTTTACCATTAGGGTAGCAAGACAAGACCCCTG-------------------TCTAAT-GGGGGGAAA----------CAGACCCTTTGCCACCTTGACCAGGGCTGAGTCCTTAAATTTCTGGATGATAATGCTTGTTATTT----------AGGAGCCAGAGGCT---GGTGGAGTTGGTTGGTTTGGAGT-------------------AGG-----CCT------GATGGCCTCTCTACTCTTGCCAAAGAAACTTTTCCCTCAGGGGGGCTCC--CATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAGGCAGGACAG-TGGGGCTAACAGTAGACTAGGCAAAGGCACGGGCTGCT-GGGGTGACCCCCCCTTCCCCAGTGTATATATTGTATCTGTGTAACATTTTGTATATTCTGGGGGGTAGGGCTG-CCCCTGTATCGTACCTAGTGGAGGTTGGATCTGGCATATGGGGAGGAGGATCTAATAATTATTTGCATCTG-GGAAACATATTTATTGCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGCGACTCGTGTTTATTTTGCTTTTCATTTTGCATTAAATGGATTTAGCCATACTGCTCAGCCTGGTGTGTTCCCGTTTCCT-TCACTGGGTCC-------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17180831 659 - 121039945 AAGCCTGGAGAAGTGGG-TCTGGATTCTCCGCCCCCACCATGTCCCTACAACC--------CCTTCCCAGTCACCATTCCCCTTTACCATTAGGGTAGCAAGACAAGACCCCTG-------------------TCTAATGGGGGGGAGA----------CAGACCCTTTGCCACGTTGACCAGGGCTGAGTCCTTAAATTTCTGGACGATGATGCCTATTATTT----------AAGAGCCAGAGGTT---GGTGGAGTCAGTTTGTTTGGAGG-------------------AGG-----TCT------GATGGCCTCCTTACTCTCACCAAAGCAACTTTTCCCTCAGGGAGGTTCC--CATCTTCTTATTCAGAA-------------------------------------------AGGCAGC---------TGAGGTGGGACAG-TGGGGCTAACAGTAGACCAGGTGAGGGCACGGGCTGCT-GGGGTGACCCCCGCTTCCCCAGTGTATATATTGTATCTGCGTAACATTTTGTATATTCTGGGGGGTGGGGCCA-CCCCTCTATCGTACCTAGTGGAGGTTGGAGCTGGCATATGGGGAAGAGGTTCTAATAATTACTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACAGAGGAAGGAGGCGGAGATGGGGTCCTGGCTCCCTTGGTGA--TGCGACTCCTGTTTATTTTGCTTTTGATTTTGGAATAAACGGATTTAGCCATACTGCTCAGCCTGGTGTGTTCCCGTTTCCT-TCACTGGGTCC-------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106663346 643 - 170124641 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG-------------------TCTAAT-GGGGGGAGA----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTCCTTGAATTTCTGGACGATGATGCTTGTTATTT----------AAGAACCAGAGGCT---GATGGAGTTGGTTTGTTTGGAGG-------------------AGG-----CCT------GATGACCTCTCTACTCTCACCAAAGCAACTTTTCCCT--GGGGGGCTCC--CATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCTGCT-GGGGTGACTCCCGCTTCCCCAGTATACAGATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCTGCCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCATAAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCACTTTTCATTGTGGAATAAATGGATTTAGCTATACTGCTCAGCCTGGTGTGTTCCCGTTTCCC-TCACTGGGTCC-------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108397132 643 - 171882078 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG-------------------TCTAAT-GGGGGGAGA----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTCCTTGAATTTCTGGACGATGATGCTTGTTATTT----------AAGAACCAGAGGCT---GATGGAGTTGGTTTGTTTGGAGG-------------------AGG-----CCT------GATGACCTCTCTACTCTCACCAAAGCAACTTTTCCCT--GGGGGGCTCC--CATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCTGCT-GGGGTGACTCCCGCTTCCCCAGTATACACATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCATAAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCACTTTTCATTGTGGAATAAATGGATTTAGCTATACTGCTCAGCCTGGTGTGTTCCCGTTTCCC-TCACTGGGTCC-------
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              81609 648 +    130206 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG-------------------TCTAA--GGGGGTAGA----------CAGACTTTTTGCCACCTTGACCATGGCTGAGTCCTTGAATTTCTGGACGATGATGCTTGTTATTT----------AAGAACCAGAGGCT---GATGGAGTTGGTTTGTTTGGAGG-------------------ATG-----GTTTGTTTGGATGACCTCTCTACTCTCACCAAAGCAACTTTTCCCT--CGGGGGCTCC--CATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCTGCT-GGGGTGACTCCCGTTTCCCCAGTATACACATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCATAAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGAGGTCGTGGCTCCCTTGGTGA--TGTGACTCctgtttatttcacttttcattgtGGAATAAATGGATTTAGCCATACAGCTCAGCCTGGTGTGTTCCCGTTTCCC-TCACTGGGTCC-------
i papAnu2.JH685126          C 0 I 134
s chlSab2.chr29              21086330 643 -  24206276 AAGCCTGGAGAAGTGGG-TCTAGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTTA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG-------------------TCTAAT-GGGGGGAGA----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTCCTTGAATTTCTGGACGATGATGCTTGTTATTT----------AAGAACCAGAGGCT---GATGGAGTTGGTTTGTTTGGAGG-------------------AGG-----CCT------GATGACCTCTCTACTCTCACCAAAGCAACTTTTCCCT--CGGGGGCTCC--CATCTTCTTATTCAGAG-------------------------------------------AGGCAAC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCTGCT-GGGATGACTCCCGCTTCCCCAGTATACACATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCATAAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCGCTTTTCATTGTGGAATAAATGGATTTAGCCATACAGCTCAGCCTGGTGTGTTCCTGTTTCCC-TCACTGGGTCC-------
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114307661 591 - 132174527 AGGCCTGGAGAAGGGGGAACTGGAGTCTCTACCCCCACCATG----TGCCACC--------CCATCCCAGTCA-----CCCCTCTATTGTTAAGGCAGCAAGACAAGACCCCTG-------------------TCTAAT-GGGGAAAGA----------CAGACCTTTT-CCAGCTTGACCAGGGCTGAGTCCTTAAATCTCTGGATGATGATGGTTGTTATTT----------AGGAGCCAGAGGCT---GCTGGAGTTGGTTGGTTTGGAGG-------------------AAG-----CCT------GATGGCCTCCTTCCTCTCACCAAAGCAACTTTTCCCTC-AGGGGGCTCC--CA---TCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAGGCAGGACAG-TGGTGCTAACTGTGGAC-AGGTGAGGGCATGGGCTGCT-GGGGTGACCCCC--TTCCCCAGTGTATGTATTATATCTGTGTAACATTTTGTATATTTTAGGGGTTTGGGGTGCCCCTTGTATCATACCTGGCAGAGGTTGGAGCTGGCACATGGGGAGGAGGTTCAAATAATTATTTGCAGTTG-GGAAACTTGTTTATTGATAGCAGAGGACAG------------------------------------------------------TCTTTTGCTTTTTATTTTGGAACAAATGGATTTAGTCACACTGCTTAGCCCGGCGTATTCCCATTTCCC-TCACTGGATCC-------
i calJac3.chr10             C 0 C 0
s canFam3.chr9               55250974 765 +  61074082 AAACCTGGAGAAGTGGG-GCCGGGGGCTCTGCTCCCACCCTGTCCCTGCCACCCTATCATTCCTTCCCAGTTA-----CCCTTTTATCCCTAAACTAGCAAGATAAGACCCCTGAGAGGGGTGTGAAAAGCCTCCTAAT-TGGGGGAGACAAATAGGTGCAGACCTCTTGCCACCTTGGCAAGGGCTGTGTCTTTA----TCTGGAC-----TACTCATCGTTCCAGAAAAACAAAGAGCCAGAGGCTCAATAAAAACATAGTTTATTTAGAGGGCTCCCTTTCTTGGGGGGCAGGGGCTCCCT------GGTGGCCTCCTCACCCCCACC-AAGCAG----TCCTTCAGAGGGGCTCAGGCATCCTC-TATTCAGAGGCACTTTGGGGAACAAGTGCTCCCCCTGTCCAGCTCAATGACTGGGCAGCACTCTCCCAGGCCTTAGGACAGTTGGGGCTAACC-CAGGCCAGGCAAAGGCATAAGCTGGTGGGGGGGGGGCCTCCCTCCCCAGTGTATATACTGTACCTGTGTAACATTTTGTATATTCTGGGGA-TAGGGCAGCCCCCTGTATCATA----GCAGAGGTTGGAACTGGCAAATGGGGAGGAAGTTCTATTAAATATTTGGGGATGAGGAAACTTATTTATTGATAGCATAGGACAGAGGAAGGAGGCGGGGACGGGGTTCCG----CCCAGGTGACTCACAACTTCTGTTT-----GCTTTTTATTTCGGAATAAATGGATTTAGCCATACTGTTTAGCCTTGTGTGTGCCTGTTTCCAGTCACTGGCCCCTAGGTCC
i canFam3.chr9              I 16 C 0

a score=31831.000000
s hg38.chr15_KI270850v1_alt    319693 16 +    430880 TGGAGTTTGTCCCACT------
s panTro4.chr15              80100980 16 +  99548318 TGGAGTTTGTCCCACT------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10107787 16 +  10928107 TGGAGTTTGTCCCACT------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17181490 16 - 121039945 TGGAGTTTGTCCCAGT------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106663989 16 - 170124641 TGCAGTTTGTCCCACA------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108397775 16 - 171882078 TGCAGTTTGTCCCACA------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21086973 16 -  24206276 TGCAGTTTGTCCCACA------
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114308252 16 - 132174527 TGGAGTTTGTGCCACT------
i calJac3.chr10             C 0 C 0
s canFam3.chr9               55251739 22 +  61074082 TGGAGTCTGCACTGTGGGCATT
i canFam3.chr9              C 0 C 0
e papAnu2.JH685126              82257 134 +    130206 I

a score=893807.000000
s hg38.chr15_KI270850v1_alt    319709 282 +    430880 GAATGAGG------------------------------------------AGCCCCAGAGTGTCTGAGCATGTC---CAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGCCAT-----AGCACCTATGGAGCACAGTACGGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCAGTGGCC---GGGAAGTCAGATACCAGCACCCAAGGGCACTGACTTCCATCCACCCCAGGCATCTT-CCCTTCCGTCCCCTTGCCTCCTTCTCCTGTCTGCACTGGGTGGCCT
s panTro4.chr15              80100996 282 +  99548318 GAATGAGG------------------------------------------AGCCCCAGAGTGTCTGAGCATGTC---CAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGCCAT-----AGCACCTATGGAGCACAGTACGGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCAGTGGCC---AGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCCACCCCAGGCATCTT-CCCTTCCGTCCCCTTGCCTCCTTCTCCTGTCTGCACTGGGTGGCCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10107803 280 +  10928107 GAATGAGG------------------------------------------AGCCT--GAGTGTCTGAGCATGTC---CAG----CTGGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCACGGGGACTGCCAT-----GGCACCTACGGAGCACAGTCCAGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCTGTGGCC---GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCCACCCCAGGCGTCTT-CCCTTCCGTCCTCTTGCCTCCCTCTCCTGTCTGCACCGGGTGGCCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17181506 282 - 121039945 GAATGAGG------------------------------------------AGCCCCAGAGTGTCTGAGCATGTC---CAG----CTGGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGACTTCACAGGGACTGCCAT-----GGCACCTATGGGGCACAGTCCGGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCAGTGGCC---GGAAAGACAGATACCAGCACCCAAGGGCGCTGACTTCCATCCACCCCAGGCATctt-cccttccgtccccttgcctccctttcctGTCTGCACCAGGTGGCCT
i nomLeu3.chr6              C 0 I 377
s rheMac3.chr7              106664005 285 - 170124641 GAACGAGG------------------------------------------AGCCCCAGAGTGTCTGAGCATGTCCAGCAG----CTGGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTAGTGGACGTGACGGGGACTGCCAT-----GGTGCCTAATGGGCACAGTCCCGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCTGTGGCC---GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTCCCTCTCCTGTCTGCACTGGGTGGCCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108397791 285 - 171882078 GAACGAGG------------------------------------------AGCCCCAGAGTGTCTGAGCATGTCCAGCAG----CTGGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTAGTGGACGTGACGGGGACTGCCAT-----GGTGCCTAATGGGCACAGTCCCGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCTGTGGCC---GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTCCCTCTCCTGTCTGCACTGGGTGGCCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              82391 282 +    130206 GAACGAGG------------------------------------------AGCCCCAGAGTGTCTGAGCATGTC---CAG----CTGGGCTGTTGAGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATGTGACGGGGACTGCCAT-----GGTGCCTAATGGGCACAGTCCCGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCTGTGGCC---GGGAAGACAGATACCAGCACCCAAGGGTACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTCTCTCTCCTGTCTGCACTGGGTGGCCT
i papAnu2.JH685126          I 134 C 0
s chlSab2.chr29              21086989 282 -  24206276 GAACGAGG------------------------------------------AGCCCCAGAGTGTCTGAGCATGTC---CAG----CTGGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACGCCTGGTGGATTTGATGGGGACTGCCAT-----GGCACCTATGGGGCACAGTCCGGCCCTGACAGCCAACAGGCTCAGAAGCCTGATCTAGCTGTGGCC---GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTACCTCCCTCTCCTGTCTGCACTGGGTGGCCT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114308268 266 - 132174527 GAATGAGG------------------------------------------AGCCCC--AGTGTCTGGGAATGTC---CAG----CTGGCCTGTTGGGGACCTTCCAGGCCTGTTACCTGTGTGCTGCCTGGTGACACCTGGGGGATTTCACGGGGACTGCCAT-----GGCACT------------TCCGGCCCTGACAGCCAGCAGGCTCAGAAGCCTGATCTAGCGGTGGCC---AGGAAGGCAGGTACCAGCACCCAA-GGCACTGACTTCCATCCACCCCAGGCATCTT--TCTTCCATCCTCCTGCCTCCCTCTCCTGTCTGTGCCTGGTGGCCT
i calJac3.chr10             C 0 C 0
s canFam3.chr9               55251761 314 +  61074082 GAACAGGGAGCAGATCCTGCCAGCAGAGGGCAGACTTCTGGATTGTGCAAAGCCCCAGTGTCTCTGAGCCTGCC---TAGCAAACAGAGCTGTTGGAGATGATCCAGGCCTGTCACCCCCATGCTGCTTGGGGAAGCCTGGGGGATCCCAGGGCCCCTGCCATGCATGGGACTCTAAGGAGCAC--TCCTGTCTTAATGGTCCAAAGGCTCAG-AGCCTGATCTAATCCTGGGTTGGGGAAAGCAGGGTCCTCGCA-CCAAGAGTGCTGCCTTCCAGTT----CAGGCACTTTGCCCTCTCATCACCCTGGCCCTCT---------------GGTGGCCT
i canFam3.chr9              C 0 C 0

a score=6617311.000000
s hg38.chr15_KI270850v1_alt    319991 2121 +    430880 GTTCTGTCTGTCCCTCCAGAATGCCGGCT----GCCCCTCAGTCTCCCTCCAGGCTGAGATCATGACCCTGACCCCTAGTGGCCGGAGCTGGCTTCACAGGATAAAAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGGAAAGGATGTGGTC--TTTTCACTTGCTCCCAACAGCACC-TAAACATGGCTTGGCCTTTCCCC--------------------------------TCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTCTCCGTCATCCGGAAATGGGTTTGATTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACATGG--------------------CTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGGCGGGGGCTGGCTGTCCACAGGCTGGGCATGACAGGGAGTCTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACAGCTTTCTCTT---GCTGGACCACAAGA--CTCCAAAAGGACAGCACAGGGACTTATTCTTAGTGCTAGAGGCGAGGCGGT--CGGCCATGTGTAACTGCAT---------------------------------------------------------------------------ATATATA----TATAGCTATTTATAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGAGGGCTGGCTTTGGGGCT-GGAGAGCCACTGTCAAGTCATAGTACACCTGCTCAGGCAGGCTTGGAAAGGGAAGTCTCCAAGTAGAGGAGGGATCTGTTTAGAGGTCAAAGTGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCAGCTGGCAAGTGGAGAGAAAGCAGAGAGAAAACAGGAGAGAGAAAAGCAAGCGGATTGCTGGTGAGGCAAGTGCAG---AGCATGGGAGTGACACAGCAGCTGTGGGAGGGCTGGGGACGGGAGGGCACAGGTGCGGGTGTGTAGTAAGGTTCCTGGAAAAGGGGCTGGAAGGGAAAGGGGAGGAGGATGGA----------GGGGGAAGCCGGAGCTT-CACAGGTAGTG-CCTGGGGGCTGCAGCGGCCCTCCCCACCC---CACACACGCC--TCTCCCATG-GCATCCAGGCAGTGCACCCACAG-TTCAGACCAATGCTCAGCCCCGTCAGGCTTCCCTTTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCGCCTTGG------------GGAGCCCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAAGGAACACTGCTTGAACCAGGATGATGAAGCTAAAAGGGATGGATGGTTGGAGTGAGCACT-GGAGGCCCCTTTGGGCCATCAGAAAGCCCAGAACCCTCTGAGAGGACCCTGGGGGAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGACTTATAAGTCTAAGAGGGGAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGGCTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC----------------------AGAGCTCAG--------------CTGGGCCAGCAGGCACTGTGGTCCCCTTGGTTGAATAGCATAGGTGACCTCTAGGAGCAACAGGCCAAGGTGCATGAGCCAACTGGCTGGC-AGTAGTGCT--------TCAGCGGGGGCCAGGGACCCTGCCTTCGGTCACACACTAGCAGCTGTGATGGTATCTGGGAGGGAGAGATGGGGTCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACCGTGTGTATAGGACTCTCAGGCTTTTA------------------------TCCTAGATCACCACTGGATTGCTGACA-GATAGAGGAAGTGGGACCCTGACTATCACCCCTAATCTGGAGTGGATTTGGCTCTCGGCACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCT-GCAGCATGACTCAGACTGCACGACAGGTACGGCG-TGCCCAGGATGATGTTCCCAGGCCTCTGGCTGCCTCAGAATCCAGCCCAACACACACCCCCCTCCAAGCTCCCAGCCCCCACACCATAAACCACAAGCTCTCTGCCCTCTCTGATGGCTCCAGAGAGCACCCACATCTGCCAGCTTGGGCATGGAGCCCGTTCCAAGACT-CCCCAGGCTCAGTCATGGA
s panTro4.chr15              80101278 2197 +  99548318 GTTCTGTCTGTCCCTCCAGAATGCTGGCT----GCCCCTCAGTCTCCCTCCAGGCTGAGATCATGACCCTGACCCCTAGTGGCCGGAGCTGGCTTCACAGGATAAAAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGGAAAGGATGTGGTC--TTTTCACTTGCTCCCAACAGCACCCTAAACATGGCTTGGCCTTTCCCC--------------------------------TCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTCTCCGTCATCCGGAAATGGGTTTGATTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACATGG--------------------CTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGGCGGGGGCTGGCTGTCCACAGGCTGGGCATGACAGGGAGTCTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACAGCTCTCTCTT---GCTGGACCACAAGA--CTCCAAAAGGACAGCACAGGGACTTATTCTTAGTGCTAGAGGCGAGGCGGT--CGGCCATGTGTAACTGtatgtgtgtatgtatatatatatatatatatatatatatatatatgtatgtgtatatatatatatata-tatatatatatatata----tatGGCTATTTATAGAACAGGGCAGGGGC-ATACCACAAAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCT-GGAGAGCCACTGTCAAGTCATAGTACACCTGCTCAGGCAGGCTTGGAAAGGGAGGTCTCCAAGTAGAGGAGGAATCTGTTTAGAAGTCAAAGTGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCAGCTGGCAAGTGGAGAGAAAGCCAAGAGAAAACAGGAGAGAGAAAAGCGAGCGGATTGCTGGTGAGGCAAGTGCAG---AGCATGGGAGTGACACAGCAGCTGTGGGAGGGCTGGGGAGGGGAGGGCACAGGTGCGGGTGTGTAGTAAGGTTCCTGGAAAAGGGGCTGGAAGGGAAAGGGGAGGAGGATGGA----------GGGGGAAGCCGGAGCTT-CACAGGTAGTG-CCTGGGGGCTGCAGCGGCCCTCCACACCC---CACACTCGCC--TCTCCCATG-GCATCCAGGCAGTGTACCCACAG-TTCAGACCAATGCTCAGCCCCCTCAGGCTTCCCTTTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCGCCTTGG------------GGAGCCCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAAGGAACACTGCTTGAACCAGGATGATGAAGCTAAAAGGGATGGATGGTTGGAGTGAGCACT-GGAGGCCCCTTTGGGCCATCAGAAAGCCCAGAACCCTCTGAGAGGACCCTGGGGGAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGACTTATAAGTCTAAGAGGGGAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGGCTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAA----------------------AGAGCTCAG--------------CTGGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCACAGGTGACCCCTAGGAGCAACAGGCCAAGGTGCATGAGCCCACTGGCTGGC-AGTAGTGCT--------TCAGCGGGGGCCAGGGACCCTGCCTTCGGTCACACACTAGCAGCTGTGATGGTATCTGGGAGGGAGAGATGGGGTCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACCGTGTGTATTGGACTCTCAGGCTTTTA------------------------TCCTAGATCACCACTGGATTGCTGACA-GATAGAGGACGTGGGACCCTGACTATCACCCCTAATCTGCAGTGGATTTGGCTCTCGGCACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCACGACAGGTACGGCG-TGCCCAGGATGATGTGCCCAGGCCTCTGGCTGCCTCAGAATCCAGGCCAACACACACCCCCCTCCAAGCTCCAAGCCCCTACACCATAAACCACAAGCTCTCTGCCCTCTCTGATGGCTCCAGAGAGCACCCACATCTGCCAGCTTCGGCATGGAGCCCATTCCAAGACT-CCCCAGGCTCAGTCATGGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10108083 2103 +  10928107 TTTCTGTCTGTCCCTCCAGACTGCCGGCT----GCCCCTCAGTCTCCCTCCAGGCTGAGATCATGACCCTTCCCCCTAGTGGCCAGAGCCAGCTTCACAGGATAAAAACCAGCTAGGCTCCAGGGACTTTCCAGGAAAGGTGTCCTTTGGAAAGGATGTGGCC--TTTTCACTTGCTCCCAACAGCACCCCAGAAATGGCTTGGCCTTTCCCC--------------------------------TCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTCTCCGTCATCCAGAAATGGGTTTGATTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACGTGG--------------------CTGCCTGCACAGCACCCCCATGCTTGGTGGAGAGTGGGAGGGATGGCGGGGGCTGGCTGTCCACAGGCCGGGCATGACAGGGAGTCTCACTGGAGGTGGCACACTTTGGAG-GGGCAATGTCAGGG-GACAGCTTTCTCTT---GTTGGACCACAAGA--CTCCAAAAGGACAGCACGGGGACTTATTCCTAGTGCTAGAGGCGAGGCGGT--CGGCCATGTGTAGGTGCAT---------------------------------------------------------------------------ACATGTA-------------TTATAGAACAAGGCA-GGGC-ATACCACAGAAGGGGCACAAGTTTTCAGTAATGGTCACACCTGGACGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCT-GGAGAGCCACTGTCAAGTCACAGAACACCCGCTCAGGCAGGCTTGGAAAGGGAGGTCTCTG---AGAAGAGGGATCTGTTTAGAGGTCGAACGGGGGCCTGGGGCTCTCAGGACAGGATGGACTTGCCTGACCCGATCAGCTGGCAAGTGGAGAGAAAGCAGAGAGAAAACAGGAGAGAGAAAAGCGAGCGGACTGCTGGTGAGGCAAGTGCAG---AGCATGGGCGTGACACAGCAGCTGTGGGAGGGCCAGGGAGGGGAGGGCACAGGTGCGGGTGTGTAGCAAGGTTCCTGGAAAAGGGGCTGGAAGGGAAAGGGGAGGAGGATGGA----------GGGAGAAGCCGGAGCTT-CACAGGTAGTG-CCTGGGGGCTGCAGCAGCCCTCCACACCC---CACACACGCC--TCTTCCATG-TCATCCAGGCAGTGTACCCACAG-TTCAGACCAATGCTCAGCCCCCTCAGGCTTCCCTTTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCGCCTTGG------------GGAGCCCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAAGGAACACTGCTTGAACCAGGATGATGAAGCTAAAAGGGATGGATGGTTGGAGTGAGCACC-GGAGGCCCCTTTGGGCCATCAGAAAGCCCAGGACCCTCTGAAAGGACCCTGGGGGAGGCAGGGAGGGCAGGT-AGCCAGATGCCACTGGCCATAGACTTAAAAGTCTAAGAGGGGAGCCTCAGCTTGTTG----------GGGGACTGCAGGGCACATAGGTGAGGCTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC----------------------AGAGCTCAG--------------CCGGGCCAGCAGGCACTGTGGTCCCCTTGGTTGAATAGCATAGGTGACCTCTAGGAGCAACAGGCCAAGGTGCATGAGCCCACTGGCTGGC-AGTGGTGCT--------TCAGCGGGGGCCAGGGACCCTGCCTTCGGTCACACACTAGCAGCTATGATGGTATCTGGGAGGGAGGAAAGGGGGCTGTGTGTCTCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACCGTGTGTATAGGACTCTCAGGCTTTTA------------------------TCCTAGATCACCACTGGATTGCCAACA-AATAGAGGAGGTGGGACCCTGAGTATCA-CCCTAATCT------GATTTGGCTCTCGGCACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGAACGACAGGTACGGCG-TGCCCAGGATGATGTTCCTAGGCTTCTGGCCGCCTCAGAATCCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCACGAGCTCTCTGCCCTCTCTGACGGCTCCAGAGAGCACCCACGTCTGCCAGCTTGGGCATGGAGCCCGTTCCAAGAGT-CCCCAGGCTCAGTCATGGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17182165 2127 - 121039945 GTTCTGTCTGTCCCTCCAGAATGCCGGCT----GCCACTCAGTCTCCCTCCAGGCTGAGATCATGACCCTGCCCCCTAGTGGCCAGAGCCGGCTTCACAGGATAAGAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGGAAAGGATGTGGCC--TTTTCACTTGCGCCCAACAGCACCCTAGAAATGGCTTGGCCTTTCCCC--------------------------------TCCCCTGAGCTCCACAGAGAACACAGCCAGTAGAGGACACATTCTCCGTCTTCCAGAAATGGGTGTGATTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACACGG--------------------CTGCCTGCACAGCACCCCCATGCTTGGTGAAGGGTAGGAGGGATGGCGGGGGCTCGCTGTCCACAGGCCAGGCATGACAGGGAGGCTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACAGCTTTCTCTT---GTTGGGCCACAAGA--CTCCAAAAGAACAGCACAGGGACTTATTCCTAGTGCTAGAGGCAAGGCGGT--CGGCCATGTGTAGGTGCAT------------------------------------------------------------ATATAGCGCatatatatatata----tatagctatttataGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAATTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTAGGGCTGGGGGAGACACTCTCAAGTCACAGAACACCCGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGAGAAGAGGAGGGATCTGTTTAGAGGTCAAAGTGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCAGCTGGTAAGTGGAGAGAAAGCAGAGAGAACA----GGAGAGAAAAGCGAGTGGATTGCGGGTGAGGCAAGTGCAG---AGCATGGGCGTGACTCGGCAGCTGTGGGAGGGCCGGGGAGGGGAGGGCCCAGGTGCGGGTGTGTAGTAAGGTTCCTGGAAAAGGGGCTGGAAGGGAAAGGGGAGCAGGATGGA----------GGGAGAAGCCGGAGCTT-CACAGGTAGTG-CCTGGGGGCTGCAGCGGCCCTCCACACCC---CACACACGCC--TCTCCCATG-GCATCCAGGCAGTGTACCCACAG-TTCAGACCAATGCTCAGCCCCCTCAGGCTTCCCTTTTCTCTGGTCATCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCGCCTTGG------------GGAGCCCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAAGGAACACTGCTTGAACCAGGATGATGAAGCTAAAGGGGATGGATGGTTGGAGTAAGCACC-GGAGGCCCCTTTGGGCCATCAGAAAGCCCAGGACCCTCTGAGAGGACCCTGGGTGAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCTATAGACTAGTAAGTCTAAGAGGGGAGCCTCAGCTTATTG----------GGGGACTGCAGGTCACATAGGTGAGGATGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGTGGGCAGGCTCACTGGAC----------------------AAAGCTCAG--------------CTGGGCCAGTAGGCACTGTGGTCCCCTTGGTTGAATAGCATAGGTGACCTCTAGGAGCAACAGGCCAAGGTGCATGAGCCCACTGGCTGGC-AGTAGTGCT--------TCAGCAGGGGCCAGGGACCCTGCCTTTGGTCACACACTGGCAGCTATGACGGTATC--AGAGAGAGGGATGGGGGCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTCGTGGGATGACTGTGCGTATAGGACTCTCAGGCTTTTA------------------------TCCTAGATCACCACTGGATCGCCAACA-AATAGAGGAGGTGGGACCCTGAGTATCA-CCCTAATCT------GATTTGGCTCTCAGCACTCCCAGGCTGGGAGCTGGATACC-CTGCCCTGGCAGCATGACTCAGACTGCACGACAGGTATGGCA-TGCCCAGGATGATGTTCCTAGGCCTCTGGCTGCCTCAGAATCCAGCCCCACACACAACCCCCTCTAAGCTCCCAGCCCCTACACCATAAACCACGAGCTCTCTGCCCTCTCTGATGGCTCCAGAGACCATTCATGTCTGCCAGCTTGGGCATGGAGCCCGTTCCAAGAGC-CCCCAGGCTCAGTCATGGA
i nomLeu3.chr6              I 377 C 0
s rheMac3.chr7              106664290 2082 - 170124641 GTTCTGTCTGTCCCTCCAGAGTGCAGGCT----GCCCCTCAGCCTCCCTCCAGGCTGAGTTCATGACCCTGCCCCCTAGTCGCCAGAGCCGGCATCACAGGATAAGAACCAGCTAAGCTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGCC--TTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGGCCTTTCCCC--------------------------------TCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTGCCCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAG-AGGACTGGTAG-AGACTGTCAGTCCACACAGNNNNNNNNNNNNNNNNNNNN-------------------------------GGGTGGGAGGGATGGCGGGGGCTGGCTGTCCA---------CATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACGGCTTTCTCTT---GTTGGGCCACAAGA--CTCCACAAGGACAGCACGGGGACTGATTCCCAGTGCTAGAGGCGAGGCCAT--CGGCCATGTATAGGTGTGCGC-------------------------------------------------------------------ATATATATATGAG----TATCGCTATTTACAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGAAGTGTCAGCTCACCACTACAACAGACTAAGTCACAGAGGAA-------GGCTTTGGGGCT-GGGGATCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGAGAGGCCTCCGAGAAGAGGAGAGATCTGTTTAGAGGTCGAAGCAGGGCCTGGGACTCTCAGGACGGGATGGACTTGCCTGACCTGATCAGCGGGCAGTTGGAGAG-AAGCAGAGAGAAAACGGGAGAGAGAAAAGGAAGCAGATTGCTGGTGAGGCAAGCGCAG---AGCACGGGCACAATGCAAGAGCTGTGTGAGGGCCAGGGAGGGGAGGGAGCAGGTGCGGGTGTGTAGTAAGGTTCCTGGAAAAGGGGCTGGAAGGGAAAAGGGAGGAAGAGGGA----------AGGAAGAGCCGGAGCTT-CACAGGTAGTG-CCTGGGGGCTGCAGCGGCCCTCCACACCC---CACATACGCC--TCTCCCACG-GCATCCAGGCAGTGCACCCACAG-TTCAGACCAATGCTCAGTCCCCTCAGGCTTCCCTTTTCTCTGGTTACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGCCCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAAGGAATACTGCTTGAACCAGGATGATGACGCTAAAAGGGATGGACGGTTGGAATGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCAGGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGGCTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC----------------------AGAGCTCAG--------------CCAGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCATAGGTGACCCCTAGGAGCAACAGGCCAAGGTGAGTGAGCCTGCTGGTCAGC-GGTAGTGCT--------TCAGCGGGGGCCAGGGACCCTGCCTTCAGTC-CACACGAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACCGTGTGCATGGGAGTCTCAAGGTTTTA------------------------TCCTAGATCACCACTGGATTGC-AACA-AATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCAGCACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCATGACAGGCACATCG-TGCCCAGGATGATGTTCCTAGACCTCTGGCCGCCTCAGAATCCAGCCCCACACACGACCCCCTCCAAGCTCC---------CACCATAAACCGCAAGCTCTCTGCCGTCTCTGACAGATCCAGAGAGCACCCATGTCTGCCAGCCTGGGCATGGAGCCCGTTCCAAGAGC-CCCCAGGCTCAGTCAGGGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108398076 2093 - 171882078 GTTCTGTCTGTCCCTCCAGAGTGCAGGCT----GCCCCTCAGTCTCCCTCCAGGCTGAGTTCATGACCCTGCCCCCTAGTGGCCAGAGCCGGCATCACAGGATAAGAACCAGCTAAGCTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGCC--TTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGGCCTTTCCCC--------------------------------TCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTGCCCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAG-AGGACTGGTAG-AGACTGTCAGTCCACGCAG--------------------CTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGGCGGGGGCTGGCTGTCCA---------CATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACAGCTTTCTCTT---GTTGGGCCACAAGA--CTCCACAAGGACAGCACGGGGACTGATTCCCAGTGCTAGAGGCGAGGCCAT--CGGCCATGTATAGGTGTGCAC-------------------------------------------------------------------ATATATATATGAG----TATCGCTATTTACAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGAAGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGGCT-GGGGATCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGAGAGGCCTCCGAGAAGAGGAGAGATCTGTTTAGAGGTCGAAGCAGGGCCTGGGACTCTCAGGACGGGATGGACTTGCCTGACCTGATCAGCGGGCAGTTGGAGAG-AAGCAGAGAGAAAACGGGAGAGAGAAAAGGAAGCAGATTGCTGGTGAGGCAAGCGCAG---AGCATGGGCACAATGCAAGAGCTGTGTGAGGGCCAGGGAGGGGAGGGAGCAGGTGCGGGTGTGTAGTAAGGTTCCTGGAAAAGGGGCTGGAAGGGAAAAGGGAGGAAGATGGA----------AGGAAGAGCCGGAGCTT-CACAGGTAGTG-CCTGGGGGCTGCAGCGGCCCTCCACACCC---CACATACGCC--TCTCCCACG-GCATCCAGGCAGTGCACCCACAG-TTCAGACCAATGCTCAGTCCCCTCAGGCTTCCCTTTTCTCTGGTTACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGCCCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAAGGAATACTGCTTGAACCAGGATGATGACGCTAAAAGGGATGGACGGTTGGAATGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCAGGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGGCTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC----------------------AGAGCTCAG--------------CCAGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCATAGGTGACCCCTAGGAGCAACAGGCCAAGGTGAGTGAGCCTGCTGGTCGGC-GGTAGTGCT--------TCAGCGGGGGCCAGGGACCCTGTCTTCAGTC-CACACGAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACTGTGTGCATGGGAGTCTCAAGGTTTTA------------------------TCCTCGATCACCACTGGATTGC-AACA-AATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCAGCACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTGCCTAGACCTCTGGCCGCCTCAGAATCCAGCCCCACACACGACCCCCTCCAAGCTCC---------CACCGTAAACCGCAAGCTCTCTGCCGTCTCTGACAGCTCCAGAGAGCACCCACGTCTGCCAGCCTGGGCACGGAGCCCGTTCCAAGAGC-CCCCAGGCTCAGTCAGGGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              82673 2104 +    130206 GTTCTGTCTGTCCTTACAGAGTGCAGGCT----GCCCCTCAGTCTCCCTCCAGGCTGAGTTCATGACCCTGCCCCCTAGTGGCCAGAGCCGGCATCACAGGATAAGAACCAGCTAAGCTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGCC--TTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGGCCTTTCCCC--------------------------------TCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTGCCCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGTCCACGCAG--------------------CTGCCTGCACAGCACCCCCATGcttggtggagggtgggagggatggCGGGGGCTGGCTGTCCA---------CATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACGGCTTTCTCTT---GTTGGGCCACAAGACTCTCCACAAGGACAGCACGGGGACTGATTCCCAGTGCTAGAGGCGAGGCCAT--CGGCCATGTATAGGtgtgcgcatat---------------------------------------------------------------atatatatatgagtatttaTCGCTATTTACAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGAAGTATCAGCTCACCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGGCT-GGGGATCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGAGAGGCCTCCGAGAAGAGGAGAGATCTGTTTAGAGGTCGAAGCAGGGCCTGGGACTCTCAGGACGGGATGGACTTGCCTGACCTGATCAGCAGGCAGttggagag-aagcagagagaaaatgggagagagaaaaggaagcagaTTGCTGGTGAGGCAAGCGCAG---AGCATGGGCACAATGCAAGAGCTGTGTGAGggccagggaggggagggagcaggTGCGGGTGTGTAGTAAGGTTCCTGGAAAAGGGGCtggaagggaaaagggaggaagaTGGA----------AGGAAGAGCCGGAACTT-CACAGGTAGTG-CCTGGGGGCTGCAGCGGCCCTCCACACCC---CACATACGCC--TCTCCCACG-GCATCCAGGCAGTGCACCCACAG-TTCAGACCAATGCTCAGTCCCCTCaggcttcccttttctctggTTACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGCCCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAAGGAATACTGCTTGAACCAGGATGATGACGCTAAAAGGGATGGACGGTTGGATTGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCAGGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGGCTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC----------------------AGAGCTCAG--------------CCAGGCCAGCAGGCAGTGTAGTCCCCTTGGCTGAATAGCATAGGTGACCCCTAGGAGCATCAGGCCAAGGTGCGTGAGCCTGCTGGCTGGC-AGTAGTGCT--------TCAGCAGGGGCCAGGGACCCTGCTTTCGGTCACACACTAGCAGCTATGATGGtacctgggagggagggaagggggcttTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACCGTGTGCATGGGAGTCTCAAGGTTTTA------------------------TCCTAGATCACCACTGGGTTGC-AACA-AATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCAGCActcccaggctgggagctgggTA-CTCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTTCCTAGACCTCTGGCCGCCTCAGAATCCAGCCCCACACACGACCCCCTCCAAGCTCC---------CACCATAAACCGCAAGCTCTCTGCCGTCTCTGACAGCTCCAGAGAGCACCCACGTCTGCCAGCCTGGGCATGGAGCCCGTTCCAAGAGC-CCCCAGGCT--GTCAGGGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21087271 2098 -  24206276 GTTCTGTCTGTCCTTACAGAGTGCAGGCT----GCCCCTCAGTCTCCCTCCAGGCTGAGTTCATGACCCTGCCCCCTAGTGGCCAGAGCCGGCTTCACAGCATAAGAGCCAGCTAAACTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGCC--TTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGGCCTTTCCCC--------------------------------TCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTCCCCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAGCAGGACTGG--A-AGACTGTCAGTCCACGCAG--------------------CTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGGCGGGGGCTGGCTGTCCA---------CATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACAGCTTTCTCTT---GTTGGGCCACAAGA--CTCCACAAGGACAGCACTGGGACTTATTCCCAGTGCTAGAGGCGAGGCCAT--CGGCCATGTATAGGTGTGCGCatatatatatatatata-----------------------------------------------aaaaaatatatatgagtatttatagctatttataGAACAGGGCAGGGGC-ATACCACAGAGGGGACACAAGTTTTCAGCAATGGTCACACCTGGAAGTGTCAGCTCAGCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGACT-GGGGATCCACTGTCAAGTCACAGGACACCTGCACAGGCAGGCTTGGAAAGGGAGGCCTCCGAGAAGAGGAGAGATCTGTTTAGAGGTCGAAGCAGGGCCTGGGACTCTCAGGACAGGATGGACTTGCCTGACCTGATCAGCGGGCAGTTCGAGAG-AAGCAG--------------------AAAGAAGCAGATTGCTGGTGAGGCAAGCGCAG---AGCATGGGCACACTGCAAGAGCTGTGTGAGGGCCAGGGAGGGGAGGGCGCAGGTGCGGGTGTGTAGTAAGGTTCCTGGAAAAGGGGCTggaagggaaaaggaaggaagatgga----------aggaagAGCCGGAGCTT-CACAGGTAGTG-CCTGGGGGCTGCAGCGGCCCTCCACACCC---CACATACGCC--TCTCCCACG-GCATCCAGGCAGTGCACCCACAG-TTCAGACCAATGCTCAGTCCCCTCAGGCTTCCCTTTTCTCTGGTTACCCTGTCTTCCAACACACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGCCCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAAGGAATACTGCTTGAACCAGAATGATGACGCTAAAAGGGATGGATGGTTGGATTGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCAGGACCCTCTGAGAGGACCGTTGGGTAGGCAAGAAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGGCTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC----------------------AGAGCTCAG--------------CCAGGCCAGCAGGCAGTGTGGTCCCCTTGGCTGAATAGCACAGGTGACCCCTAGAAGCAACAGGCCAAAGTGTGTGAGCCCGCTGGCTGGC-AGTAGTGCT--------TCAGCAGGGGCCAGGGACCCTGCTTTCGGTCACACACTAGCAGCTATGATAGTACCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACCGTGTGCATGGGAGTCTCAAGGTTTTA------------------------TCCTAGATCACCACTGGATTGC-AACA-AATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCGGCACTCGCAGGCTGGGAGCTGGATA-CTCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACGGCA-TGCCCAGGATGATGTTCCTAGACCTCTGGCCGCCTCAGAATCCAGCCCCACACACGACCCCCTCCAAGCTCC---------CACCATAAACCGCGAGCTCTCTGCCGTCTCTGACAGCTCCAGAGAGCACCCACGTCTGCCAGCCTGGGCATGGAGCCCATTCCAAGAGC-CCCCAGGCTCAGTCAGGGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114308534 2056 - 132174527 ATTCTGTCTGTTTCTCCAGAGTGCTGGAT----GCCATGCAGGCTCCCTCTAGGCTGAGTTCATGGCCCTGCCCCCTAGTAGCCAGAGCCAGCTTCACAGGATAAGA-CCAGCTAAGCCTCAGAGGCTTTCCAGGAACAGTGTCCCTTGGAAAGGGTGGGGCC---CTTCAC-CGCTCCCAACAGCACCCCACAAATGGTTTGCCCTTTACCC--------------------------------TCCCCTGAGCACCAAAGAGA--ACAGTCCACAGAGGACGCATTCCCCCTCATGTAGAAATGGGTTTGACTCTCAGCCGAGGGACAGCAGGACTGGT---AGACTGTCAGACCACAGGG--------------------CTGCCTGCACAGCACCCCCATGCTTGGCGG-GGGCTGGAGGGATGGCGGGGCTTGGGTGTCCACATGCCGGGCATGACAGGGAGGCTCACTGGAGGTGGCGCACTTTGGAG-GGGCAGTATCAGGG-GACAACTTTCTCTT---GGTGGACCACAAGA--CTCCACAAGGACAGCCCGGTGACTGACTCCCAGTGCCAGAGGTGAGGCGGT--CGGCCACGTGTAGATGTGT---------------------------------------------------------------------ATATATATGTGAGTATTTCTAGATATTTCTAGAACAGGGCAGGGGC-ATGCCACAGAGGGGG---------------ACGGTCACATCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCT-GGGG----------GAGTCACAGAACAGCCGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGACAGGAGGGGGGATCTGTGTAGAGGTCGAAGGGGGACCTGGGGCTCTCAGGATGCGATGAACTTCCCTGTCCCAATCAGCTGGCAGTTGCAGAGAAAGCAGAGAGGAAACAGGAGAGAGAAAAGCGAGGAGAGAGCTGGTGAGGTAAGCGCAG---AGCAGGGGCGC--TGCAGCAGCTGGGGGAGGGCTGGGGAAGGGAGGACACAGGTGCAGGTGTG--GCAAGGTTCCTGGAAAAGGGGCTGGAAGGGAAAGGGAAGGAAGATGGA----------GGAAGGAGCCCGAGTTT-CACAGGTAGTGCCCCGGGGGCTGCGGCAGCCCTCCCCATCCAAACACGCTGGCC--TCTCCCACG-GCACCCAGGCAGTGCACTCACAG-TTCAGACCCATGTTCACCGGCCTCTGGCTGCCCTCTTTTCTGGTCACCCTGTCTTCCAATCCACTGGCCCAGGGTCACCCCTTGCCTTGG------------GGAGCCCCACACAACAGCCACCAGGCCT----------GATAGA-GAAGGAACACTGCCTGAACCAGGAGGGTGAAGCTAAAAGGGCTGGATGGCTGGAGGGAGCGCC-TGAAGACCCTCTGGGTGTTTAGAAAGTCCAGGACCCTCTGAAGGGACCCTGGGGGAGGTGGGGAGGGCAGGC-AGCTGGATGCCAGTGGCCATAGACTTATAAGTCTAAGTGGGGACCCTCAGCTGGTCGGTGAGGGGGCGGGGGTTGCAGGTCACAAAGTTGAGGCTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCCGTGGCAG-----GGGAGGCGGGTGAGTTCTCTGGAC----------------------AGAGCTCAG--------------CTGGGCCAGCAGCCACTGTGGTC-CGTTGGCTGAATAG---AGGG------TAAGAGCAACAGGCCAAGGTGCATGAGCCTGCTGGCTGGC-GGTAGTGTTTCAAAGGGTCAGAGGGGGCCAGGGACCCTGCCTTCAGTCACATGACAGCATCTACGA-GGGACCTGGGAGGGAGGGGAGGGGGCCGTGTGTC-CTGCCTGACCTGTGAGGTGTGTGGTGGGATGATCATGTGTATGGGACTCTCAAGCTTTTA-------------------------CCTAGATCACCACTTGATTGCCGACA-GACAAAGGAGGTGAGACCC----TATCACCCTGGCTCTGCAGTGGA-TTGGCTCTCTGCACTCCCAGGCTGGGAGCTGGATG-C-CCTGCCTGTCAGCATGACTCACACTGCAGGACAGACACAGCG-GGCCCAGGATGACGTTCCTAGGCCTCTGG----CTCCGAGTCCAGCCCTACACACAA-CCCCTCCAAGCTCGCAGCCCTA-CACCATAA------------------------------------AGGACCCAC-TGTGTCAGCTTGGGCATAGAGCCTGTTCCATGAG--CCCCAGGCTCAGCCATGGA
i calJac3.chr10             C 0 C 0
s canFam3.chr9               55252075 2220 +  61074082 GTTGT-CCTTCCCCTGCACAGTGCGTGCCAGGGGCCCCCAATCCTCCTTCTGGGCTGAGTTGGTGCCCCTGCCCCCTAGTGGGCAGAGCAGGCTTCCCAGAAAGATAACCCATGAATCCGCAGGTGCTTTCCCAGTAGG-----CCCTGGAAAGGACAGGACCTCTCTTCGC-CACTCATCCCAACACCCTAGCAATGGTGGGGCCCTTCCCCACCGCTTCATCCCAAGGTTGAAGCCTTCCCCTTCCCCTGAACTCCACAAAAACACAAGCCAGCAGAGGACA-GTCTCCCATCGTCCAGAAATGGGTTTTATTCTCAGCCAAGAGACAGCAAGACTGGTGGCAGA-----GGACCACACAG--------------------CTGCCAGTACAGCGCCCCCCTG--TGCTCGAGCGGGGGAGGGACGGAAGAG--TGGCCGTCCACAGGCCGGGCATGACAGGGAGGCTCATCGGAGGTGGCACACTTTGGAGAGGGGGATGTCAGGGTGACAGTGTTCCCCTGTAGTTGGACCACAAGA--CTCCTCAAGGACAGCGTGGTGATTGGTTCCCAACACTAGAGGCGAGGCTGTGGCAGCCATATAtgtatgtgt---------------------------------------------------------------------gtgtgtgtgtgtgtATTTATAGTTATTTATAGAATGGGATAGGAGCAATACCACAGA-GGGGCACAAGTTTTCACCAAT-ATCACGCCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGA-GGCTTTGGGGCT-GGGGAGCCACTGTCAAGTCACAGAACAGCCGTCCAGGCAGGCTTGGAAAGGGAGGTCTCCGAGGAATAGAGGGATCTGGTTAGAGGTCGAAGGGGGGCCTGGGGCTCTCAGGACGGGACGGACTTGCCTGACCCGATCGGCTGGCAGTTGGAGAGAAAGCAAAAAGAGAACG-----GAGAGAAGGAGGAAGAGAACTGGTAAGGCAAGGGCAGCCAAGCCCGG---TGGGGTAGGAG----GGGAGGACAGGGG--GCGAAAACAAAGCTGAGGGTGTG-GGCAAGGGTTCTGGAATGGAG---GAGAGAGAAAGGGAAGGTAGGAGGAACTGGAGGTGGGTGGGGGCCACAGCTTCCAGGGGTCTTG-GATGGAGGCCGGGGCGGCCCTCCCTCTGC---CACGCACGCCGGTCTCTCATACACCACCAGGCAGTGCACCCACAGCTCCAGGCACATGCTCGG-CCCCTCTGCCTTCCCTCTTTTCTGGCCCCCATGTCTTCCAATGTACTGGCCCAGGACCAGCCCTAGTCTCGGAATGTGGGTCCTGATGCCCCATGCCACAGCCACCAGTCCTCGTGGAGAGAGACAGGAGAAAGAACAGTGTTTGAACCAGGAGGGCAAAGCTAAAA-----GGATGGCTGGAGGGGGCACCTGGAGGCCCCTCTGGGTGGGCAGAAAGCCCGGAGTCCTCAGAAGGGACCCT-GGGGAGGCAGGGAGGTCAGGCAAGCCGGATGCCAGCGGCCACAGGCTTATAAGTCTAAGAGGGGAGCCTCAGCTGGCCG----------GGGGACCACAGGTCGCGTAGGTGAGGCTGGGCCCTTCCTGCTGGGGAAAAGCAGAAGAGTGAGAGTCAGCGGCAGGGACAGAGTGGCAGGTGGGTT-GCTGGGCGCATGTGCGGCCCAACCAGGGTGGGACTCAGAAAAGCTGATTTGCCTAGATTGGTGGACACTGTCGTCCCCTTGGCTGAAAAGTGTAGGTCACCCC-AGGAGCACCAGGCCTAGGCCCGGGAGCCTGAGGGCTGGCTTACGGTGCT--------TCATCTGGGGCAGAGGACACTGTCGTTTGTAGTGCCATCACAAGCATGACCATACC-AGGAGGGAGAGGAACAGGCTGCGTGATCCTACCTCGCCCGT------------------ACACTGTGGACAGGGCCCTCCAGCTTTCAGAAATCAGCAAACCAGAGCCTTCGCCCCAAATTGCTGCTCAACTGCTGGCACCATAGAGGAGGTGGGGCTGTGAC---CTCCTCTGCCCTATCATGGCCTCGGTTCCCAGCGCTCCTGAGCTGGGAGCTGGCTG-CCCTGCCCCGACAGCTTGGCTCAGGTTGGACAATGAGTGTGGCACCCCCCAGGACAAAGTTCCAAG---CCTGGCTGGCT--GAGTTCAGCCCCACGCACAACCCCCTCCAAGGTTCCTGCCTCTACACCATAAACCATGAGCCCTCTGTCCTCTCTGATGGCTCCAGAGAGCACCTGTGTCTGCCAGCTCGGGCGCGGAGCCTGTCCCAAGAGCTCCCCAGGCTCAGCCATGGA
i canFam3.chr9              C 0 I 2972

a score=31187.000000
s hg38.chr15_KI270850v1_alt    322112 12 +    430880 GGCT-GGGGGACT
s panTro4.chr15              80103475 12 +  99548318 GGCT-GGGGGACT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10110186 12 +  10928107 GGCT-GGGGGACT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17184292 11 - 121039945 GGCT--GGGGACT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106666372 13 - 170124641 GGCTGGGGGGGCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108400169 13 - 171882078 GGCTGGGGGGGCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              84777 13 +    130206 GGCTgggggggCT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21089369 13 -  24206276 GGCTGGGGGGGCT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             114310590 12 - 132174527 GGCC-TTGGGGCT
i calJac3.chr10             C 0 N 0
s canFam3.chr9               55257267 12 +  61074082 GGTT-GGGGGGCT
i canFam3.chr9              I 2972 C 0

a score=1478163.000000
s hg38.chr15_KI270850v1_alt    322124 539 +    430880 TTGGGACCGTGGGGGCCGGCCCTGGTACCTGCGTCCAGCCAGGATGCTCTGCACCTGCAGCCAAGAGTCATCCACGGGC--CCCCATGGGCatgc------------------------------tgatggtgatcatgttgatgtcgctgatgctgctgAGCACCTCTGTCAGCATATGGTGCATGCACAGCATCTCATCGCCCCGCTGTACCTGCTCTGCAGACTCCTCCATCAGCGTGTTCTGGTCCCCATGCGAGTACAGGTTGGATAGCAGCTCCAAGAAGATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGCAAGGAGGGTGCAACCTGATGcctgtgctgccctggctgccctgccgggccctgcTAGGACTGTGCGCTGGGCTTGGAGCCC--CAAGTACGGCTTTTCAGGCGCAGCTTCTACACCACTTAAGACTCGAAGATCTGCCTCcccac-cgccttttctcactcagatggggacactgaggtccaga--ggaaaagtcacctgtccaaggttacagatctggaaggggacccaggacCTATCATGCCACCAGGACACCT
s panTro4.chr15              80103487 539 +  99548318 TTGGGACCGTGGGAGCCGGCCCTGGTATCTGCGTCCAGCCAGGATGCTCTGCACCTGCAGGCAAGAGTCATCCACGGGC--CCCCATGGGCATGC------------------------------TGATGGTGATCATGTTGATGTCGCTGATGCTGCTGAGCACCTCTGTCAGCATGTGGTGCATGCACAGCATCTCATCGCCCCGCTGTACCTGCTCTGCAGACTCCTCCATCAGCGTGTTCTGGTCCCCATGCGAGTACAGGTTGGATAGCAGCTCCGAGATGATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGGAGGGTGCAACCTGATGCCTGTGCTGCCCTGGCTGCCCTGCCGGGCCCTGCTAGGACTGTGCGCTGGGCTTGGAGCCC--CAAGTACGGCTTTTCAGGCACAGCTTCTACACCACTTAAGACTCGAAGATCTGCCTCcccac-cgccttttctcactcagatggggacactgaggtcgaga--ggaaaagtcacctgtccaaggttacagatctggaaggggacccaggacCTATCATGCCACCAGGACACCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10110198 538 +  10928107 TTGGGACTGTGGGGGCCGGCCCTGGTACCTGCATCCAGCCGGGATGCTCTGCACCTGCAGCCAAGAGTCATCCACGGGC--CCCCATGGGCATGC------------------------------TGATGGTGATCGTGTTGATGTCGCTGATGATGCTGAGCACCTCTGTCAGCACATGGTGCATGCACAGCATCTCATTGCCCCGCTGCACCTGCTCTGTAGACTGCTCCATCGGCGTGTCCTGGTCCCCATGCGAGTACAGGTTGGATAGCAGCTCCGAGAAGATGAATTCTTTGGTCTGAGAGTGGGCAAAGAGGGAAGGAGGGTGCAACCTAATGCCTGTGCCACCCTGGCTGCCCTGCCGGACCCTGCTGGGACTGTATGCTGGGCTTGGAGCCC--CGAGTATGGCTTTTCAGATGCAGCTTCTACACCACTT-AGACTCGAAGATCTGCCTCcccac-cgccttttctcactcagatggggacactgaggtccaga--ggaaaagtcacctgtccaaggttacagatctggaaggggacccaggacCTATCATGCCACCAGGACACCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17184303 534 - 121039945 TTGGGACTGTGGGGGCCGGCCCTGGTATCTGCATCCAGGCGGGATGCTCTGCACTTGCAGCCAGGAGTCATCCACAGGC--CCCCATGGGCATGC------------------------------TGATGGCGATCGTGTTGATGTCGCTGATGATGCTGAGCACCTCTGTCAGCACGTGGTGCATGCACAGCATCTCATCACCCCGCTGTACCTGCTCTGCAGACT----CATCAGCGTGTTCTGGTCCCCATTCGAGTACAGGTTGGACAGCAGCTCCAAGAAGATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGGAGGGTGGAACCTGATGCCTGTGCCGCCCTGGCTGCCCTGCCGGGCCCTGCTGGGACTGTGCGCTGGGCTTGGAGCCC--CGAGTATGGTTTTTCAGATGCAGCTTCTACATCACTT-AGACTCTAAGATCTGCCTCCCCAC-TGCCTTTTctcactcagatggggacactgaggtccaga--ggaaaagtcacgtgtccaaggttacaGATATGGAAGGGGACTCAGGACCTATCATGCCACCGGCACAACT
i nomLeu3.chr6              C 0 I 139
s rheMac3.chr7              106666385 550 - 170124641 TTGGGACCGTGGGGACCAGCCCTGGTACCTGCGTCTGGCCGGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCTGTGGGCGTGC---------------TGATGGTGGTCGTGTTGATGGTGGTCGTGTTGATGTCACCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGCGCAGCATCTCGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCTGGTCCCCATGTGAGTACAGGTTGGACCGCAGCTCCGA---GATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGCCTGTGCTGCCCTGGCCGCCCTGCCGGGCCCTGCTGGGACTGTGCGCTGGGCTTGGAGCCC--TAAGTATGGCTTTTCAGATGTGGCTTCTACACCACTT-AGActtgaagatctgcctccccac-tgccttttctcactcagatgggaacactgaggtccaga--ggaaaagtcacctgtccaaggttacagatctggaagaggacccaggacCTATCATGCCACCAGGACACCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108400182 565 - 171882078 TTGGGACCGTGGGGACCAGCCCTGGTACCTGCGTCTGGCCGGGATGCTCCGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCTgtgggcgtgctgatggtggtcgtgttgatggtggtcgtgttgatggtggtcgtgttgatgTCGCCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGCGCAGCATGTCGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCTGGTCCCCATGTGAGTACAGGTTGGACAGCAGCTCCGA---GATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGcctgtgctgccctggccgccctgccgggccctgcTGGGACTGTGCGCTGGGCTTGGAGCCC--TAAGTATGGCTTTTCAGATGTGGCGTCTACACCACTT-AGACTCGAAGATCTGCCTCcccac-tgccttttctcactcagatgggaacactgaggtccaga--ggaaaagtcacctgtccaaggttacagatctggaagaggacccaggacCTATCATGCCACCAGGACACCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              84790 550 +    130206 TTAGGACCGTGGGGACCAGCCCTGGTACCTGCGTCTGGCCGGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCTGTGGGCGTGC---------------TGACGGTGGTCGTGTTGATGGTGGTCGTGTTGATGTCGCCAATGATGCTGAGCACCTCCATCAGCATGTGGTGCATGCGCAGCATCTTGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCTGGTCCCCATGTGAGTACAGGTTGGACAGCAGCTCCGA---GATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGCCTGTGCTGCCCTGGCCGCCCTGCCGGGCCCTGCTGGGACTGTGCGCTGGGCTTGGAGCCC--TAAGTATGGCTTTTCAGATGTGGCTTCTACACCACTT-AGACTCGAAGATCTGCCTCCCCAT-TGCCTTTTCTCACTCAGATGGGAACACTGAGGTCCAGA--GGAAAAGTCACCTGTCCAAGGTTACAGATCTGGAAGAGGACCCAGGACCTATCATGCCACCAGGACACCT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21089382 550 -  24206276 TTGGGACCGTGGGGACCAGCCCTGGTACCTGCATCTGGCCGGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCCCTGGGCGTGC---------------TGACAGTGGTCGTGTTGACGGTGGTCGTGTTGATGTCGCCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGTGCAGCATCTTGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCCGGTCCCCATGTGAGTACAGGTTGGACAGCAGCTCTGA---GATGAATTCCTTGGTCTGAGAATGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGcctgtgctgccctggctgccctgccgggccctgcTGGGACTGTACGCTGGGCTTGGAGCCC--CAAGTATGGCTTTTCAGATGTGGCTTCTACACCACTT-AGACTCGAAGATCTGCCTCCCCAC-TGCCTTTTCTCACTcagatgggaacactgaggtccaga--ggaaaagtcacctgtccaaggttacagatctagaagaggacccaggacCTATCATGCCACCAGGACACCC
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55257279 509 +  61074082 TTGGGGCCGTGGGGGCCGGCCCTGGTACCTGCGTCCGGCCGGTACGCTCTGCACCTGCAGCCAGGAGTCGTCCACGGGCGGGGGCATGGGCGTGC------------------------------TGACGGTGGTCGTGTTGATATCGCCGATGATGCTGAGCGCCTCCTTCAGTGCGTGGTACATGCGCAGCATCTCGTCGCGCCGTTGCGCCTGCTCCGCCGACTCCTCCATCAGTGTGTTCTGGTCCCCGCACGAGTACAGGTTGGCGAGCAGCTCCGAGAAGATGAATTCCTTCGTCTGCGGGCGCGCCAAGAGAGGAGG-GGCTAGGACCTGACGCCTGTGCCAGTCTGGCCGCCTTG-----------GGGGACCGTGCGCTGGACTGGGAGCTCGGTGGTCCTGGCTTTGCCACTCAGAGATCTCCCCCGCTT-----------TCCCGTCTCCATGCTTGCCCTTTT---CTCAGAT-----------ggtccagaggggaaaactgacctgtccaaggtcataGATACGGGAGGGCACTCAGGGCCTACCATGCAACCAGCACACCT
i canFam3.chr9              C 0 C 0

a score=21318.000000
s hg38.chr15_KI270850v1_alt    322663  22 +    430880 -------------------------------------------------------------------------------GTCTACTTGGT-------------------TTTT-AAAAAt--t
s panTro4.chr15              80104026  22 +  99548318 -------------------------------------------------------------------------------GTCTACTCGGT-------------------TTTT-AAAAAt--t
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10110736  23 +  10928107 -------------------------------------------------------------------------------GTCTACTCAGT-------------------TTTTAAAAAAt--t
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17184976  23 - 121039945 -------------------------------------------------------------------------------GTCTACTCAGT-------------------TTTTAAAAAtt--t
i nomLeu3.chr6              I 139 C 0
s rheMac3.chr7              106666935  24 - 170124641 -------------------------------------------------------------------------------GTCTACTTGGT-------------------TTTT-AAAAAttgt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108400747  24 - 171882078 -------------------------------------------------------------------------------GTCTACTTGGT-------------------TTTT-AAAAAttgt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85340  24 +    130206 -------------------------------------------------------------------------------GTctacttggt-------------------tttt-aaaaattgt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21089932  24 -  24206276 -------------------------------------------------------------------------------GTCTACTTGGT-------------------TTTT-AAAAATTGt
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55257788 120 +  61074082 agttattcagcattgtttcagcctcagtttcctcatctgtaaaatgggatagttataaccccttccaaggacttgcacaatccacggggccaaaataaggtagatggcatttt-aaaaat--t
i canFam3.chr9              C 0 I 188

a score=262651.000000
s hg38.chr15_KI270850v1_alt    322685 109 +    430880 ttttggagataggatctcactctgtcgccaggctggagtacagtgggtgagatcactgcttattgcagcctcaacctcctgggctcaaagtgatcctccaacatcagcc
s panTro4.chr15              80104048 109 +  99548318 ttttggagataggatctcactctgttgccaggctggagtacagtgggtgagatcactgcttattgcagcctcaacctcctgggctcaaagtgatcctccaacatcagcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10110759 109 +  10928107 ttttggagataggatctcactctgtcaccaggctggagtacagtgggtgagatcactacttactgcagcctcaacctcctgggctcaaagtgatcctccaacttcagcc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17184999 109 - 121039945 ttttggagacaggatctcactctgtcgctgggctggagtacagtgggtgagatcactgcttaccgcagcctcaacctcctgggctcaaagtgatcctccaacatcagct
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106666959 107 - 170124641 ttttggagataggatcttactctgttgccaggttggagtacagtggatgagatcactgcttactgcagcctcaacctcctgggctc--agtgatcctccaatgtcagcc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108400771 107 - 171882078 ttttggagataggatcttactctgttgccaggttggagtacagtggatgagatcactgcttactgcagcctcaacctcctgggctc--agtgatcctccaatgtcagcc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85364 109 +    130206 ttttggagataggatcttactctgttgccaggttggagtacagtgggtgagatcactgcttactgcagcctcaacctcctgggctcaaagtgatcctccaacatcagcc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21089956 109 -  24206276 ttttggagatacgatcttactctgttgccaggttggagtacagtgggtgagatcactgcttactgcagcctcaacctcctgggctcaaagtgatcctccaacgtcagcc
i chlSab2.chr29             C 0 C 0
e canFam3.chr9               55257908 188 +  61074082 I

a score=163258.000000
s hg38.chr15_KI270850v1_alt    322794  69 +    430880 tgttgagtagctaggacta--------caggca-tgtgccacca----------------------ccaagtccagc-atttttaaaatttttatgtacag
s panTro4.chr15              80104157  69 +  99548318 tgttgagtagctaggatta--------caggca-tgtgccacca----------------------ccaagcccagc-atttttaaaatttttatgtacag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10110868  70 +  10928107 tgttgagtagctaggacta--------caggca-tgtgccacca----------------------ccaagcccagctatttttaaaatttttatgtacag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17185108  70 - 121039945 tgtcgagtagctaggacta--------caggca-tgtgccacca----------------------ccgagcccagctacttttaaaatttttatgtacag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106667066  70 - 170124641 tgtcaagtagctaggacta--------caggca-tgtgccatca----------------------ccaagcccggctatttttaaaatttgtgtgtacag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108400878  70 - 171882078 tgtcaagtagctaggacta--------caggca-tgtgccatca----------------------ccaagcccggctatttttaaaatttgtgtgtacag
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85473  70 +    130206 tgtcaagtagctaggacta--------caggca-tgtgccatca----------------------ccaagcccggctatttttaaaatttgtgtgtaCAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21090065  70 -  24206276 tgtcaagtagctaggacta--------caggca-tgtgccatca----------------------ccaagcccggctatttttaaaatttgtgtgtacag
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55258096 101 +  61074082 tgttgagcacctactcctactatgtgccaggcactgtgctgctctgcactttatattcccttaattctcaactccattattatccatatttttacatagag
i canFam3.chr9              I 188 I 257

a score=282019.000000
s hg38.chr15_KI270850v1_alt    322863 112 +    430880 accaggtctcactatgttgcccaggctggtctcaaactcctgtgctcaagcgatcctcctgccttggcctcccaaagtgctgggattacagggatgggccactgtgcccagt
s panTro4.chr15              80104226 112 +  99548318 accaggtctcactatgttgcccaggctggtctcaaactcctgtgctcaagcgatcctcctgccttggcctcccaaagtgctgggattacagggatgggccactgtgcccagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10110938 112 +  10928107 accaggtctcactatgttgcccaggctggtctcaaactcctgtgctcaagcgatcctcctgccttggcctcccaaagtgctgggattacagggatgggccactgtgcccagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17185178 112 - 121039945 accaggtctcactatgttgcccaggctggtctcaaactcctgtgctcaagcaatcctcctgctttggcctcccaaagtgctgggattacagggatgggccactgtgcccagt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106667136 112 - 170124641 acctggactcactgtgttgcccaggctggtctcgaactcctgtgctcaagcgaacctcctgccttggcctcccaaagtgctgggattacaggcatgggccactgtgcccagt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108400948 112 - 171882078 acctggactcactgtgttgcccaggctggtctcgaactcctgtgctcaagcgaacctcctgccttggcctcccaaagtgctgggattacaggcatgggccactgtgcccagt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85543 112 +    130206 ACCTggactcactgtgttgcccaggctggtctcgaactcctgtgctcaagcgaacctcctgccttggcctcccaaagtgctgggattacaggcatgggccactgtgcccagt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21090135 112 -  24206276 acctggactcactatgttgcccaggctggtctcgaactcctgtgctcaagcgagcctcctgccttggcctcccaaagtgctgggattacaggcatgggccactgtgcccagt
i chlSab2.chr29             C 0 C 0
e canFam3.chr9               55258197 257 +  61074082 I

a score=156619.000000
s hg38.chr15_KI270850v1_alt    322975 55 +    430880 cCCATGTTATATTTC-TATGGGACAGCTCTGGTCTTGACC-ATGCCTCCCTCCCTGG
s panTro4.chr15              80104338 55 +  99548318 cCCATGTTATATTTC-TATGGGACAGCTCTGGTCTTGACC-ATGCCTCCCTCCCTGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10111050 55 +  10928107 cCCATGTTATATTTC-TATGGGACAGCTCTGGTCTTCACC-GTGCCTCCCTCCCTGG
i ponAbe2.chr15_random      C 0 I 2039
s nomLeu3.chr6               17185290 55 - 121039945 cCCATGTCATATTTC-TGTGGGACAGCTCTGGTCTTGACC-GTGCCTCCCTCCCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106667248 55 - 170124641 cCCACATTATATTTC-CATGGGACAGCTCTGGTCTTGACC-GTGCCTCCCTCCCTGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108401060 55 - 171882078 cCCACGTTATATTTC-CATGGGACAGCTCTGGTCTTGACC-GTGCCTCCCTCCCTGG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85655 55 +    130206 cccacGTTATATTTC-CATGGGACAGCTCTGGTCTTGACC-GTGCCTCCCTCCCTGG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21090247 55 -  24206276 cCCACGTTATATTTC-CATGGGACAGCTCTGGTCTTGACC-GTGCCTCCCTCCCTGG
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55258454 57 +  61074082 CTCACATTATATTTCTTTTTGGACAGCTCTAGTGTGGACCTATACCTACCTCTCTAG
i canFam3.chr9              I 257 C 0

a score=37256.000000
s hg38.chr15_KI270850v1_alt    323030 11 +    430880 ACCTGGTCCCA
s panTro4.chr15              80104393 11 +  99548318 ACCTGGTCCCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10113144 11 +  10928107 ACCTGGTCCCA
i ponAbe2.chr15_random      I 2039 C 0
s nomLeu3.chr6               17185345 11 - 121039945 ACCTGGTCCCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106667303 11 - 170124641 ACCTGGTCCCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108401115 11 - 171882078 ACCTGGTCCCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85710 11 +    130206 ACCTGGTCCCA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21090302 11 -  24206276 ACCTGGTCCCA
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55258511 11 +  61074082 ACCTGATCCCA
i canFam3.chr9              C 0 I 2

a score=1870.000000
s hg38.chr15_KI270850v1_alt    323041 2 +    430880 TA
s panTro4.chr15              80104404 2 +  99548318 TA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10113155 2 +  10928107 TA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17185356 2 - 121039945 TA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106667314 2 - 170124641 GA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108401126 2 - 171882078 GA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85721 2 +    130206 GA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21090313 2 -  24206276 GA
i chlSab2.chr29             C 0 C 0
e canFam3.chr9               55258522 2 +  61074082 I

a score=540400.000000
s hg38.chr15_KI270850v1_alt    323043 202 +    430880 GGGCTGGTCGGCATCTCTCCCAGGCCAGCATGGCCACCTCCATCCCCAGTGCCACAGTCGCCCCCTGCCCCCATGGGGCAGTGCATGAACATTGTTGATCATGAGGTGCATGATGGTCCTGGGCAGGAGACCAACCATGAGGTCCCACACTGTCTTGTTGACAATGGCTGTATAGGAGTCTACCAGGTTCTGGGTGGTCTCC
s panTro4.chr15              80104406 201 +  99548318 GGGCTGGTCGGCATCTCTCCCAGGCCAGCATGGCCACCTCCATCCCCAGTGCCACAGTCG-CCCCTGCCACCATGGGGCAGTGCATGAACATTGTTGATTATGAGGTGCATGATGGTCCTGGGCAGGAGACCAACCATGAGGTCCCACACTGTCTTGTTGACAATGGCCGTATAGGAGTCTACCAGGTTCTGGGTGGTCTCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10113157 202 +  10928107 GGGCTGATCGGCATCTCTCCCAGGCCAACATGTCCACCTCCGTCCCCAGCGCCTCAGTAACCCCCTGCCCCCATGAGGCAGTGCATGCACGTTGTTGATCATGAGGTGCATGACGGTCCTGGGCATGAGACCAACCATGAGGTCCCACACTATCTTGTTGACAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17185358 202 - 121039945 GGGCTGGTCCACATCTCTCCCAGGCCAACATGGCCACCTCCATCCCCAGTGCCACAGTCACCCCCTGCCCACATGGGGCAGTGCATGCACATTGTTGATCATGAGGTGCATGATGATCCTGGGCATGAGACCAACCATGAGGTCCCACACTGTCTTGTTGACAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106667316 202 - 170124641 GGGCTGTTTGCCATCTCCCCCAGGCCAACATGGCCACCTGCATCCCCAGTGCCATAGGAGCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCATGAGACCAACCACGAGGTCCAGCACGGTCTTGTTGACAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108401128 202 - 171882078 GGGCTGTTTGCCATCTCCCCCAGGCCAACATGGCCACCTGCATCCCCAGTGCCATAGGAGCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCATGAGACCAACCACGAAGTCCAGCACGGTCTTGTTGACAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTCC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85723 202 +    130206 GGGCTGTTTGCCATCTCCCCCAGCCCAACATGGCCACCTGCATCCCCAGTGCCACAGGAGCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCATGAGACCAACCACGAGGTCCAGCACGGTCTTGTTGACAGTGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTCC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21090315 202 -  24206276 GGGCTGTTTGCCATCTCCCCCAGGCCAACATGGCCACCTGCATCCCCAGTGCCACAGGAGCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCACGAGACCAACCACGAGGTCCAGCACAGTCTTGTTGACAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTCC
i chlSab2.chr29             C 0 C 0
s canFam3.chr9               55258524 189 +  61074082 GGACTGGTCTGTGCCTCCCCCAGGCCAATCTGGCCA-CTCCCTCCCTGGTCCCAAAAGAGCACCCACTGCCCACGAAGTGTTGCACCCACATTGTTGATCATGAGGTGCATGATGGTCTTCGGCATGAG------------GTCACGCACGGTCTTGTTCACGATGGCCATGTATGAGTCTACCAGGTTCCGGATGGTCTCC
i canFam3.chr9              I 2 N 0

a score=1226821.000000
s hg38.chr15_KI270850v1_alt    323245 512 +    430880 TTTAAGATCTATTTGCTtagaatagtgtttactagaggtgagg------aagggggaggaggtagccaaaggttggctaacagatTAACAGATATAAGAGTACATggctgaatgtggtggctcacacactagtgtaatcctagctctctgggaggctgagcggggaggatcacttgaggccaggagtgcacggccagcctgggtaacacaggaggtattatgtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAACCCAAATTGAAAGACAAAATAAATCAACCATGACTTTTCACATTTTGTGAATGTGACcaaaatgtgaccaaggactgactgaatt--acatagtattacatca--gttacatttcctgattttgatcattgtattgtggttatataaaataatgttcttgttctggaagtaacactgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcagaaaaaa--a
s panTro4.chr15              80104607 512 +  99548318 TTTAAGATCTATTTGCTTAGAATAGTGTTTACTAGAGGTGAGG------AAGGGGGAGGAGGTAGCCAAAGGTTGGCTAACAGTTTAACAGATATAAGAGTACATggctgaatgcggtggctcacacactagtgtaatcctagctctctgggaggctgaggggggaggatcacttgaggccaggagtgcacggccagcctgggtaacacaggaggtactatgtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAACCCAAATTGCAAGACAAAATAAATCAACCATGACTTTTCACATTTTGTGAATGTGACcaaaatgtgaccaaggactgactgaatt--acatagtattacatca--gttacatttcctgattttgatcattgtattgtggttatataaaataatgttcttgttctggaagtaacactgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcggaaaaaa--a
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10113359 518 +  10928107 TTTAAGATCTATTTGCTtagaataatgtttactagaggtgaggaagagtaagggggagggggtagccaaaggttggctaacagatTA--AGATATAAGAGTACATggctgaatgcggtggctcacacactagtgtaaccctagctctctgggaggctgaggggggaggatcacttgaggccaggagttcacggccagcctgggtaacacaggagatattatgtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAATCAACCATGACCTTTCACATTTTGTGAATGTGACcaaaatgtgaccaaggactgactgaatt--acatagtattgtatcaatgttacgtttcctgattttgatcattgtattgtggttatataaaataatgttcttgttctggaagtaacactgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcagaaaaaa--a
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17185560 518 - 121039945 TTTAAGATCTATTTGCCtagaatagtgtttactagaggtgaggaagagtaaggcggagggggtagccaaaggttggctaacagatTAACAGATATGAGAGTACATggctgaatgtggtggctcacacactagtgtaatcctagctctctgggaggctgagtggggaggatcacttgaggccaggagttcacggccagcctgggtaacataggagatattatgtctacaaaaaatttaaaaattagctaggcatggtggtctatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAATCAAC--TGACTTTTCACATTTTGTGAATGTGACcaaaatgtgaccaaggactgactgaatt--acatagtattatatcaatgttacatttcctgactttgatcattgtattgtggttatataaaataatgttcttgttctggaagtaacactgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcagaaaaaa--a
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106667518 512 - 170124641 TTTAAGATCTATTTGCTtagaatagtgtttactagaggtgaggaagggtaagggggagggggtagccaaaggttggctaacagggtaacagatacaagagtacaTggctgaatgtggtggctcacacactggtgtaatcctagctctctgggaggctgaggggagaggatcacttgaggtcaggagttcatggccagcctgggcaacataggagacattaggtctacaaaaaatttaaaaattagctacgcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAATCAATC---ACTTTTCACATTTTGTGAATGTGATcaaaatgtgaccaaggactcactgaatt--acatagtattatatcaatgttacatttcctgattttgatcattgcattgtggttatataaaataatgttcttgttctggaagtaacactgaaatatttgggagcaaatgggcagatctcc-----aacttcaagtggagcagaaaaaa--a
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108401330 506 - 171882078 TTTAAGATCTATTTGCTtagaatagtgtttactagaggtgaggaagggtaagggggagggggtagccaaaggttggctaacaggttaacagatacaagagtacaTggctgaatgtggtggctcacacactggtgtaatcctagctctctgggaggctgaggggagaggatcacttgaggtcaggagttcatggccagcctgggcaacataggagacattaggtctacaaaaaatttaaaaattagctacgcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAATCAATC---ACTTTTCACATTTTGTGAATGTGATCAAAATGTGACCAAGGACTCACTGAATT--ACatagtattatatcaatgttacatttcctgattttgatcattgcattgtggttatataaaataatgttcttgttctggaagtaacactgaaatatttgggagcaaatgggcagatctc-----------caagtggagcagaaaaaa--a
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              85925 517 +    130206 TTTAAGATCTATTTGCTTAGAATAGTGTTTACTAGAGGTGAGGAAGGGTAAGGGGGAGGAGGTAGCCAAAGGTTGGCTAACAGGTTAACAGATACAAGAGTACatggctgaatgtggtggctcacacactgGTGTAATCCTagctctctgggaggctgaggggagaggatcacttgaggtcaggagttcacggccagcctgggcaacataggagatATTaggtctacaaaaaatttaaaaattagctaggtatggtggtccatacctgtggtcccggctactaaAGCCCAAATTGAAGGACAAAATAAATCAATCACGACTTTTCACATTTTGTGAATGTGATCAAAATGTGACCAAGGACTCACTGAATT--ACATAGTATTATATCAATGttacatttcctgattttgatcattGCATTGtggttatataaaataatgttcttGTTCTGGAAGTAACACTGAAATATTTGGGAGCAAATGGGCAGATCTCC-----AACTTCAagtggagcagaaaaaaata
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21090517 517 -  24206276 TTTAAGATCTATTTGCTtagaatagtgtttactagaggtgaggaagggtaagggggagggggtagccaaaggttggctaacaggttaacagatacaagagtacaTggctgaatgtggtggctcacacactagtgtaatcctagctctctgggaggctgaggggagaggatcactcgaggccaggagttcatggccagcgtgggcaacataggagacattatgtctacaaaaaatttaaaaattagctaggcatggtggtccacacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAATCAATCACGACTTTTCACATTTTGTGAATGTGATcaaaatgtgaccaaggactcactgaattacacatagtattatatcaatgttacatttcctgatttttatcattgcattgtggttatataaaataatgttcttgttctagaagtaacactgaaatatttgggagcaaatgggcagatctcc-----aacttcaagtggagcagaaaaaa--a
i chlSab2.chr29             C 0 I 53

a score=16671.000000
s hg38.chr15_KI270850v1_alt    323757 9 +    430880 gttgtgtgt
s panTro4.chr15              80105119 9 +  99548318 gttgtgtgt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10113877 9 +  10928107 gttgtgtgt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17186078 9 - 121039945 GTTTTGTGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106668030 9 - 170124641 gttgtgtgt
i rheMac3.chr7              C 0 I 63
s macFas5.chr7              108401836 9 - 171882078 gttgtgtgt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              86442 9 +    130206 gttgtgtgt
i papAnu2.JH685126          C 0 C 0
e chlSab2.chr29              21091034 53 -  24206276 I

a score=5817.000000
s hg38.chr15_KI270850v1_alt    323766 6 +    430880 gtccat
s panTro4.chr15              80105128 6 +  99548318 gtccat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10113886 6 +  10928107 gtccat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17186087 6 - 121039945 GTccat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108401845 6 - 171882078 atacat
i macFas5.chr7              C 0 I 33
s papAnu2.JH685126              86451 6 +    130206 atacat
i papAnu2.JH685126          C 0 I 35
e chlSab2.chr29              21091034 53 -  24206276 I
e rheMac3.chr7              106668039 63 - 170124641 I

a score=199587.000000
s hg38.chr15_KI270850v1_alt    323772 409 +    430880 ggaatactatgcagccataaaaaaggatgagttcatgtcctttgtatggacatggatgaagctagaaaccatcattctgagcaaactgtcacaaggacagaaaaccaaacaccgcatgttctcactcataggtgggaactgaacaatgagaacacttgggacacaggatggggaacatcgcacaccggggcctgtcatggggttg-caggagggatagcattaggagatagacctaatataaatgataagttaacaggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataacaataat----taaaaaaaaATAAATCGTT--------AAAATAAAGAATAAATGTAATAGACTTTCTTGAATATAAAAAGT-
s panTro4.chr15              80105134 411 +  99548318 ggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctagaaaccatcattctgagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactcataggtgggaactgaacaatgagaacacttgggacacaggatggggaacatcgcacactggggcctgtcatggggtta-ggggagggatagcattaggagatagacctaatataaatgataagttaacgggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataacaataataa--ttaaagaaaataaatcgtt--------aaaataaaaaataaatgtAATAGACTTTCTTGAATATAAAAAGT-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10113892 419 +  10928107 ggaatactatgcagccat-aaaaaggatgagtttgtgtcctttgtagggacatggatgaagctagaaaccatcattctgagcaaactatcgcaaggacagaaaatcaaacactacatgttctcactcataggtgggaattgaacaatgagaacactt-ggacacagggtggggaacatcacacactggggcctgtcatggggtagcggggagggatagcattaggagatagacctaacataaatgacaagttaacgggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcaagttgtgcacatgtaccctagaacttaaagtataacaataataatttaaaaaaaaACAAATCGTTAAAG-AAAAAAAGAAGAAATAAATGTAATAGATTTTCTTGAATATAAAAAGT-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17186093 413 - 121039945 ggaaaactatgcagccataaaaaaggatgagttcatgtcctctgtagggacatggatgaagctagaaaccatcattctgagcaaactatcgcaaggacagaaaaccaaacaccacatgttctcactcataggtgggaattgaacaatgagaacactt-ggacacagggtggggaacatcacacaccggggcctgtcatggggttg-ggagagggatagcattaggagatagacctaatataaatgacaagttaatgggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataataatttt--------aaaaaataaaTCGTTAAAATAAAGAAAAAAAGAAAAAATGTTATAGATTTTCTTGAATATAAAAAgtg
i nomLeu3.chr6              C 0 C 0
e chlSab2.chr29              21091034  53 -  24206276 I
e papAnu2.JH685126              86457  35 +    130206 I
e macFas5.chr7              108401851  33 - 171882078 I
e rheMac3.chr7              106668039  63 - 170124641 I

a score=6116.000000
s hg38.chr15_KI270850v1_alt    324181 7 +    430880 TGTGTGT
s panTro4.chr15              80105545 7 +  99548318 TGTGTGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10114311 7 +  10928107 TGTGTGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17186506 7 - 121039945 tgtgtgt
i nomLeu3.chr6              C 0 C 0
s papAnu2.JH685126              86492 7 +    130206 tgtgtat
i papAnu2.JH685126          I 35 C 0
e chlSab2.chr29              21091034 53 -  24206276 I
e macFas5.chr7              108401851 33 - 171882078 I
e rheMac3.chr7              106668039 63 - 170124641 I

a score=2339.000000
s hg38.chr15_KI270850v1_alt    324188 16 +    430880 GTGTG----------------tatatatatat
s panTro4.chr15              80105552 30 +  99548318 GTGTG-TGtatatgt-atatatatatatatat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10114318 32 +  10928107 GTGttttatatatataaaaaatataaaaatat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17186513 16 - 121039945 gtgtg----------------tgtgtgtgtgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108401884 16 - 171882078 gtgtg----------------tatatatatac
i macFas5.chr7              I 33 I 10
s papAnu2.JH685126              86499 16 +    130206 atata----------------tacacacacac
i papAnu2.JH685126          C 0 C 0
e chlSab2.chr29              21091034 53 -  24206276 I
e rheMac3.chr7              106668039 63 - 170124641 I

a score=3459.000000
s hg38.chr15_KI270850v1_alt    324204 4 +    430880 atat
s panTro4.chr15              80105582 4 +  99548318 atat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10114350 4 +  10928107 aaat
i ponAbe2.chr15_random      C 0 I 18
s nomLeu3.chr6               17186529 4 - 121039945 gtgt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106668102 4 - 170124641 atac
i rheMac3.chr7              I 63 C 0
s macFas5.chr7              108401910 4 - 171882078 atac
i macFas5.chr7              I 10 C 0
s papAnu2.JH685126              86515 4 +    130206 atac
i papAnu2.JH685126          C 0 C 0
e chlSab2.chr29              21091034 53 -  24206276 I

a score=578041.000000
s hg38.chr15_KI270850v1_alt    324208 244 +    430880 atatataaagaatatatggcctggtgcagtggctcacacctataatcccagcactttgggaggctgatgcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccc--tctctactaataatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgagacaggagaatcacctgaacctggaaggtggaggttgcagtgagc
s panTro4.chr15              80105586 245 +  99548318 atatataAAGAATATATggcctggtgcagtggctcacacctataatcccagcac-ttgggaggctgatgcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaataatacaaaatcagccaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgagacaggagaatcacctgaacctggaaggtggaggttgcagtgagc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10114372 246 +  10928107 atataaaaagaatatatggcctggtgcagtggctcacacctataatctcagcactttgggaggctgatgcaggtggatcacctgaggccgggagttcaagaccagcctgaccaacatggagaaaccctgtctctcctaataatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgagacaggagaatcgcctgaacctgggaagtggaagttgcagtgagc
i ponAbe2.chr15_random      I 18 C 0
s nomLeu3.chr6               17186533 246 - 121039945 gtgtgtAAAGAATATATggcctggcacagtggctcacacctataatcccagcactttgggaggctgatgcaggtggatcacctgaggtcaggagttcaagaccagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgagacaggagaatcgcctgaacctgggaggtggaggttgcagggacc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106668106 243 - 170124641 atatacaaagaatatatggcctggcgcggtggctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgaggtagggagttcaagaacagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcgggaggctgagacaggagaatcacctgaacctgggaagtggaggttgcagtgaga
i rheMac3.chr7              C 0 I 29
s macFas5.chr7              108401914 243 - 171882078 atatacaaagaatatatggcctggcgcggtggctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgaggtagggagttcaagaacagcctgaccaacatggggaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcgggaggctgagacatgagaatcacctgaacctgggaagtggaggttgcagtgagc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              86519 243 +    130206 atatacaaagaatatatggcctggcgcggtggctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgaggtagggagttcaagaacagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcgggaggctgagacaggagaatcacctgaacctgggaactggaggttgcagtgagc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21091087 243 -  24206276 atatacaaagaatataTggcctggcgcagtggctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgagttagggagttcaagaacagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcggggggctgaggcaggagaatcacctgaacctgggaagtggaggttgcagtaagc
i chlSab2.chr29             I 53 C 0

a score=14803.000000
s hg38.chr15_KI270850v1_alt    324452 10 +    430880 caagatcctg
s panTro4.chr15              80105831 10 +  99548318 caagatcgtg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10114618 10 +  10928107 caagatcgcg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17186779 10 - 121039945 caagatcgcg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108402157 10 - 171882078 caagatcaca
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              86762 10 +    130206 caagatcaca
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21091330 10 -  24206276 caagatcaca
i chlSab2.chr29             C 0 C 0
e rheMac3.chr7              106668349 29 - 170124641 I

a score=467532.000000
s hg38.chr15_KI270850v1_alt    324462 210 +    430880 ccattgcactccagcctgggccacaagagcgaaactctgtctcaaaaaag-aaaaaaaaaattagctttgtgtggcggtgagcgtctgtaatcccagctactcaggaggctgaggcaggacaatcacttgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagacttcatctcC-------
s panTro4.chr15              80105841 210 +  99548318 ccattgcactccagcctgggccacaagagcgaaactctgtctcaaaaaag-aaaaaaaaaattagctttgtgtggcggtgagcgtctgtaatcccagctactcgggaggctgaggcaggacaatcacttgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagacttcatctcC-------
i panTro4.chr15             C 0 M 1177
s ponAbe2.chr15_random       10114628 208 +  10928107 ccattgcactccagcgtgggccacaagagcaaaa--ctgtctcaaaaaag-aaaaaaaaaattagctttgtgtggccgtgagcgcctgtaatcccagctactcgggaggctgaggcaggacaatcacttgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagactccatctcC-------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17186789 211 - 121039945 ccattgcactccagcctggtccacgagagcgaaactctgtctcaaaaaagaaaaaaaaaaattagctttgtgtggcggtgagcgcctgtaatcccagcaactcgggaggctgaggcaggagaatcacctgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagactccatctcc-------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106668378 214 - 170124641 ccattgcactccagcctggtccacaagagcagaactccgtctcaaaa----aaaaaaaaaaatagcttgttgtggtggtgagcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactagggagttggaggttgcagtgagacaagatcgtgccactgcactccagcctgggtgacagagtgagactctatctACCGCTCCA
i rheMac3.chr7              I 29 C 0
s macFas5.chr7              108402167 214 - 171882078 ccattgcactccagcctggtccacaagagcagaactccgtctcaaaa----aaaaaaaaaaaTAGCTTTgtgtggtggtgagcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactagggagttggaggttgcagtgagacaagatcgtgccactgcactccagcctgggtgacagagtgagactctatctACCGCTCCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              86772 214 +    130206 ccattgcactccagcctggtccacaagagcagaactccgtctcaaaa----aaaaaaaaaaattgctttgtgtggtggtgagcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactagggagttggaggttgcagtgagacaagatcgtgccactgcactccagcctgggtgacagagtgagactctatctaccgctcca
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21091340 202 -  24206276 ccattgcactccagcctggtccacaagagcagaactccgtctc--------aaaaaaaaaattagctttgtgtggtggtgagcgcctgtaatcccagctactcgggagactgaggcaggagaatcacttgaactag------ggaggctgcagtgggacaagatcgtgccactgcactccagcctgggtg--agagtgagactctatctACCGCTCCA
i chlSab2.chr29             C 0 C 0

a score=610686.000000
s hg38.chr15_KI270850v1_alt    324672 358 +    430880 CCCCCCGcaaaaaaataaagccattgaggcaaaatgtgaactggtaaacctgggtgttctttgtactattcttgcaacttctctgtaagtttg-----------aaattatacaaaaattaagttacaaaaCACATTAAAAATGTCTGCTGTATTTATCTGCTTGACAGAAATAGATATGTAAGAATCACTTTAAGGCTAGAGCTTTCCCACTTGCTGGCTGCtttttttt-tggagacagggtcacacttcgtcgcctagattgtagtgcagtggcatgatctcggctcatcgcaacctccacctccaaggcttaggcagccctctgaccgcctaagcatgtgtagctggactacacatgcacatcacc
s ponAbe2.chr15_random       10114836 356 +  10928107 CCCCcaa-aaaaagataaagccattgaggcaaaatgtgaactggtaaacctcggcgttctttgtactattcttgcaacttctctgtaaatttg-----------aaattatacaaaaattaagttataaaaCACATTAAAAATGTCTGCTGTATTTATCTGCTTGACAGAAATAGATATGCAAGAATCACTTTAAGGCTAGAGCTTTGCCACTTCCTGGCTGCtttttttt--ggagacagggtctcacttcgtcgcctagattgtagtgcagtggcatgatctcggctcatcgcaacctccacctccaaggcttaggcagccctccgtccgcctaaccatgtgtagctggactacacatgcacatcacc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17187000 359 - 121039945 ccccagaaaaaaagataaaGCcattgaggcaaaatgtgaactggtaaacctgggtgttctttgtactattcttgcaacttctctgtaagtttg-----------agattatacaaaaattaagttacaaaaCACATTTAAAATATCTGCTGTATTTATCTGCTTGACAGAAATAGATACGCAAGAATCACTTTAAGGCTAGAGCTTTGCCACTTTCTCACTGCttttttttttgaagacagggtctcactttgtcgcctagattgtagtgcagtggcatgatctcggctcatcacaacctccacctccaaggcttaggcagccctccgaccgcctaagcacatgtagctggactacacatgcacatcacc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106668592 357 - 170124641 CCCCCcaaaaaaagataaagccattgaagcaaaatatgaactagtaaacttgggtgttctttgtactattcttccaacttctctgtaagtttg-----------aaattatacaaaaattaagttacaaaaCACATTTAAAATGTTTGCTGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGC-ttttttt-ttgagacagggtctcacttcgtcgcctagattgtagtgcagtggtgtgatctcggctcattgcaacttccacctccaaggcttaggcggccctccaacctcagcctcccaagtagctggactacacatgcatatcacc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108402381 357 - 171882078 CCCCCcaaaaaaagataaagccattgaagcaaaatatgaactagtaaacttgggtgttctttgtactattcttccaacttctctgtaagtttg-----------aaattatacaaaaattaagttacaaaaCACATTTAAAATGTTTGCCGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGC-ttttttt-ttgagacagggtctcacttcgtcgcctagattgtagtgcagtggtgtgatctcggctcattgcaacttccacctccaaggcttaggcggccctccaacctcagcctcccaagtagctggactacacatgcatatcacc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              86986 358 +    130206 ccccccaaaaaaagataAAGCCATTGAAGCAAAATATGAACTAGTAAACTTGGGTGTTCTTTGTACTATTCTTCCAACTtctctgtaagtttg-----------aaattatacaaaaattaagttacaaaacacatttaaaatgtttgctgtaTTTATCTGCTTGACAGAAGCAGATACGCAAGAATCACTTTAAGGCTAGAACTTTGCCActtcctggctgctttttttt-ttgagacagggtctcacttcgtcGCCTAgattgtagtgcagtggcgtgatctcggctcattccAACTTCCACCTCCAAGGCTTAGGCAgccctccaacctcagcctcccaagcagctggactACAcatgcacatcacc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21091542 369 -  24206276 CCCCCcaaaaaaagataaagccattgaagcaaaatatgaactagtaaacttgggtgttctttgtactattcttcaaacttctctgtaagtttgaaattatacaaaaattatacaaaaattaaGTTACAAAACACATTTAAAATGTTTGCTGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGCtttttttt-ttgagacagggtctcacttcgtcgcctagattgtagtgcagtggcgtgatctcggctcactgcaactttcagctccaaggcttaggcggccctccaacctcagcctcccaagtagctggactacacatgcacatcacc
i chlSab2.chr29             C 0 C 0
e panTro4.chr15              80106051 1177 +  99548318 M

a score=283310.000000
s hg38.chr15_KI270850v1_alt    325030 151 +    430880 atgccca--------gcttattt----tctacctttttagtagagaggaggtcttgg---tattgcccaggctggtctccaaccctcaggctcaag-caatccctcccacctcagtct--cctgaagtactgggattacaggtgtgagcca-ccatg-cctgCCTGTTCTC
s ponAbe2.chr15_random       10115192 151 +  10928107 atgcccg--------gcttattt----tctacctttttagtagagaggaggtcttgc---tattgcccaggctggtctccaactctcaggctcaag-caatccctcccacctcagtct--cctgaagtactgggattacaggtgtgagcca-ccatg-cccgCCTGTTTTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17187359 149 - 121039945 atgacta--------gcttattt----tctacctttttagtagaga-gaagtcttgc---tattgcccaggctggtctccaactctcaagctcaag-caatccctcccgcctcagtct--cctg-agtactgggattacaggtgtgagcca-catgc-cctgccTGTTCTC
i nomLeu3.chr6              C 0 M 100
s rheMac3.chr7              106668949 150 - 170124641 atgccca--------gcttcttt----tctaccttttttgt--agaggaggtcttgc---tattgcccaggctggtctccaagtctcaggctcaag-caatccttcccaactcagtct--cctcaagtactgggattacaggtgtgagcca-ccatgccctgccCGTTCTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108402738 150 - 171882078 atgccca--------gcttcttt----tctaccttttttgt--agaggaggtcttgc---tattgcccaggctggtctccaactctcaggctcaag-caatccttcccacctcagtct--cctcaagtactgggattacaggtgtgagcca-ccatgccctgccCGTTCTC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              87344 152 +    130206 atgccca--------gcttattt----tctaccttttttgtagagaggaggtcttgc---tattgcccaggctggtctccaactctcaggctcaag-caatccttcccacctcagtct--cctcaagtactgggattacaggtgtgagcca-ccatgccctgcccgtTCTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21091911 149 -  24206276 atgccca--------gcttattt----tctacctttttcgtagagaggaggtcttgc---tattgcccaggctggtctccaactctcaggctcaag-caatccttcccacctcagt-----ctcaagtactgggattacaggtgtgagcca-ccatgccctgccCGCTCTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22227561 169 + 158406734 ATGCCCAGGGTAATTGTTTATTTTATGTTTATAttttttgga-agaaaaggttctggctatatcccccaagctggcttctaactc-aaggctcaagccaatccccctcttcccagttttccttgaagtgctgggattacatgtgggagccacccatgccctgccCATTTAT
i calJac3.chr6              N 0 C 0
e panTro4.chr15              80106051 1177 +  99548318 M

a score=234689.000000
s hg38.chr15_KI270850v1_alt    325181 178 +    430880 -CTGGACATGCAG---CCAGCTAAGCTTGGCTCTGCAACAGCTCCTTGTCCCACTGGAGAAAAA--GAGCCCACAGCTTTCCTCATATGCAAGGGCA-TGAACCAACCAAGTGCAGCCCAGCTCCTGTGAGA--------------------------------------------CACACACACAC--GTGG-TTAACTGACAG---CGACAGAGAGCCTAAATAAAGCTCAGA
s ponAbe2.chr15_random       10115343 178 +  10928107 -TTGGACACCCAT---CCAGCTAAGCCTGGCTCTGCAACAGCTCCTTGTTCCACTGGAGAAACACGGAGCCCACAACTTTCCTCATACGCAAGGGCA-TGAACCAACCAAGTGCAGCCCAGCTCCTGTGAGA--------------------------------------------CACACACACACACGCGG-TTAACTGACAG---CGACAGAGATCCTAAA----GCTCAGA
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106669099 212 - 170124641 -TTGGACACCCGTCCACCAGCTAAGCTTGGCTCTCCAACAGCTCCTTCTCCCACTGGAGAAACACGGAGCCACCAACTTTCCTCATACGCAAGGGCA-TGAACCAACCAAGTGCAGCCCAGCTCCTGGGACGCGCGCG----------------CGCGcacacacacacacacacacacacacacacacgcaG-TTAACTGACAGCCTCAACAGAGATCCTAAA----GCTCAGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108402888 228 - 171882078 -TTGGACACCCGTCCACCAGCTAAGCTTGGCTCTCCAACAGCTCCTCCTCCCACTGGAGAAACACGGAGCCACCAACTTTCCTCATACGCAAGGGCA-TGAACCAACCAAGTGCAGCCCAGCTCCTGAGACGcacgcgcacacacacgcacacacacacacacacacacacacacacacacacacacacGCAG-TTAACTGACAGCCTCAACAGAGATCCTAAA----GCTCAGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              87496 178 +    130206 -TTGGACACCCGTCCACCAGCTAAGGTTGGCTCTCCAACAGCTCCTTCTCCCACTGGAGAAACACGGAGCCACCAACTTTCCTCATACGCAAGGGCA-TGAACCAACCAAGTGCAGCCCAGCTCCTGAGACG--------------------------------------------------CACACACGCAG-TTAACTGACAGCCTCAACAGAGATCCTAAA----GCTCAGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21092060 188 -  24206276 -TTGGACACCCATCCACCAGCTAAGCTTGGCTCTGCAACAGCTCCTTCTCCCACTGGAGAAACACGGAGCCCCCAATTTTCCTCATACGCAAGGGCA-TGAACCAACCAAGTGCAGTCCAGCTCCTGAGACG----------------------------------------CGCACACACACACACACGCAG-TGAACTGACAGCCTCAACAGAGATCCTAAA----GCTCAGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22227730 166 + 158406734 TTGGGACACATGC---CCAGCTAAGCTTGGCCTTACAACACCTCCTTCTCCCACTGGAGAAACACGAAGCCCACAGTGTTCCTCATATCCAAGGGCATTGAACCAACCAAGGGCAGCCCAGCTTCTG--------------------------------------------------------ATGCACGCAGTTTAACTCACAGCCTCC----AGAGTCCATG----GGTGA--
i calJac3.chr6              C 0 C 0
e nomLeu3.chr6               17187508 100 - 121039945 M
e panTro4.chr15              80106051 1177 +  99548318 M

a score=256956.000000
s hg38.chr15_KI270850v1_alt    325359 143 +    430880 GTCCAGGGTAGTCTACCCAGGTTGCAGCTGGTGAGCTCTGCCTCCGGTTAGGCTGAAGCATCCCAGTATCA---ATCCTCCCATACAcatttattcacatttgttgagatctcctatgttctaggcattgggctcaacattg----gaca
s ponAbe2.chr15_random       10115521 143 +  10928107 GTCCAGGGGAGTCTACCCAGGTTGCAGCTGGTGAGCTCTGCCTCTGGTTAGGCTGAAGCATCCCAGTATCA---ATCCTCCCATACACATTTATTCACATTTGTTGAGATCTTCCATATTCTAGGCATTGGGCTCAACATTG----GACA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17187608 136 - 121039945 GTCCAGGGGAGTCTACCCAGGTTGCAGCTGGTGAGCTCTGCCTCCAGTTAGGCTGAAGCATCCCAGTATCG---ATCTTCCCATACACATTTATTCACATTTTTTGAGATCTCTTATAGTCTAGGCATTGGGCTCAACA-----------
i nomLeu3.chr6              M 100 C 0
s rheMac3.chr7              106669311 141 - 170124641 GTCCAGGGCAGTCTACTCAGGCTGCAGCTGGTGAG-TCTGCCTCCAGTTAGGCTGAAGCATCCCAGTATCATCGGTTCTCT----CAcatttattcacatttgttgagatctcttatattccaggcactgggctccacactg----gaca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108403116 141 - 171882078 GTCCAGGGCAGTCTACTCAGGCTGCAGCTGGTGAG-TCTGCCTCCAGTTAGGCTGAAGCATCCCAGTATCATCGGTTCTCC----CACATTTATTCACATTTGTTGAGATCTCTTATATTCCAGGCACTGGGCTCCACACTG----GACA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              87674 141 +    130206 GTCCAGGGCAGTCTACTCAGGCTGCAGCTGGTGAG-TCTGCCTCCAGTTAGGCTGAAGCATCCCAGTATCATCAGTTCTCC----CACATTTATTCACATTTGTTGAGATCTCTTATATTCCAGGCACTGGGCTCCACCCTG----GACA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21092248 141 -  24206276 GTCCAGGGCAGTCTACTCAGGCTGCAGCTGGTGAG-TCTGCCTCCAGTTAGGCTGAAGCATCCCAGTATCATTGGTTCTCC----CATATTTATTCACATTTGTTGAGCTCTCTTATATTCCAGGCACTGGGCTCCACACTG----GACA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22227896 121 + 158406734 GTCCAGTGTAGTCTATACAGGCTGCAGTGGGTGAGCTCTGCCTCCGGTTAG-------------ATTATCACTGATCTTCC--------------CACACTTGTTGAGATCT--TATATTGTAAGCACTGAACTCAACACTGAACAGACA
i calJac3.chr6              C 0 C 0
e panTro4.chr15              80106051 1177 +  99548318 M

a score=653973.000000
s hg38.chr15_KI270850v1_alt    325502 317 +    430880 caaagACACCATTCATCCTAACTCCCACTGAAAGAAA-GTCAACCTCTGATACAC--GATAATCCTGTTGCTACCTTCTGAACATGGGCAAGTTGGCCCAAATTGTATGTACCCAGCAGGGGCTG-------AAGAC---------------CCAGGGAAGCAGGG--------------------TGGAGCTGC------CAAAGCAGCTTTCCAGGCTCATACTGCAGACCACTCTCAACACGTTCAGGCTTGCCCTTGCTCCTTTACT--AAACTCTGGTGAACC--------CACTCCCCATAAACCAGATGCAGCAGCACCTGAATCCCAGACAAGTGCCAGCTGATCTGTTGCCTC-----GAGAGCTCCTGCCTTT
s ponAbe2.chr15_random       10115664 320 +  10928107 CAAAGACACCATTCATCCTACCTCCCACTGAATGAAAAGTCAAACCCTGATACACATGATAATCCTGTTGCTACCTTCTGAACGTGGGCAAGTTGGCCCAAATTTTATGTACCCATCAGGGGCTG-------AAGAC---------------CCAGGGAAGCAGGG--------------------TGGAGCTGC------CAAAGCAGCTTTCCGGGCTCGTACTGCAGACCACTCTCAACACGCTCAGGCTTGCCCTTGCTCCTTTACT--AAACTCTGGAGAACC--------CACTCCCCATAAACCAGATGCAGCAGCACCTGTATCCCAGACAAGTGCCAGCTGATGTGTTGCCTT-----GAGAGCTCCTGCCTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17187744 306 - 121039945 ------------TCATCCTACCTCCCACTGAAAGAAAAGTCAAACCCTGATACAC--GATAATCCTGTTGCTACCTTCTGAACGTGGGCAAGTTGGCCCAAATTGTGTGTACCCAGCACGGGCTG-------AAGAC---------------CCAGGGAAGCAGGG--------------------TGGAGCTAT------CAAAGCATCTTTCCAGGCTCATACGGCAGACCACTCTCGACACACTCAGGCTTGCCCTTGCTCCTTTACT--AAACTCTGGTGAACA--------CACTCCCCATAAACCAGATGAAGCAGCACCTGAACCCCAGGCAAGTGCCAGCTGATGTGTTGCCTT-----GAGAACTCCTGCCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106669452 313 - 170124641 caaagACACCACTTATCCTACCTCCCACTGACAGAAAAGTAAAACCCTGATACACGTGATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTTGGCCCAAATTATGTGTACCGAGCAGGGGTTG-------AAGAG---------------CCAGGGAAGCAGGA--------------------TGGGGCTGT------CAAAGCAGCTTTCCAGGCTCATACTGCAGACCACTAGCCACACGCTCAGGCTTGCCCTTGCTCATTTACT--AAACTCCGGTGAACC--------CATTCCCCATAGAC------AAGCAGCACCCGAATCCCAGGCAAGTGCCAGCTGATGTGTCACCTT-----GAGAGCTCCTGCCTT-
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108403257 313 - 171882078 CAAAGACACCACTTATCCTACCTCCCACTGACAGAAAAGTAAAACCCTGATACACGTGATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTCGGCCCAAATTATGTGTACCGAGCAGGGGTTG-------AAGAG---------------GCAGGGAAGCAGGG--------------------TGGGGCTGT------CAAAGCAGCTTTCCAGGCTCATACTGCAGACCACTAGCCACACGCTCAGGCTTGCCCTTGCTCATTTACT--AAACTCCGGTGAACC--------CATTCCCCATAGAC------AAGCAGCACCCGAATCCCAGGCAAGTGCCAGCTGATGTGTCACCTT-----GAGAGCTCCTGCCTT-
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              87815 314 +    130206 CAAAGACACCACTTATCCTACCTCCCACTGACAGAAAAGTAAAACCCTGATACACGTGATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTTGGCCCAAATTATGTGTACCGAGCAGGGGTTG-------AAGAC---------------CCAGGGAAGCAGGG--------------------TGGGGCTGT------CAAAGCAGCTTTCCAGGCTCATACTGCAGACCACTAGCCACACGCTCAGGCTTGCCCTTGCTCGTTTACT--AAACTCCGGTGAACC--------CATTCCCCATAGAC------AAGCAGCACCCGAATCCCAGGCAAGTGCCAGCTGATGTGTCACCTT-----GAGAGCTCCTGCCTTT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21092389 314 -  24206276 CAAAGACACCACTTATCCTACCTCCCACTGACAGAAAAGTAAAACCCTGATACACGTGATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTTGGCCCAAATTATGTGTACCGAGCAGGGGTTG-------AAGAC---------------CCAGGGAAGCAGGG--------------------TGGGGCTAT------CAAAGCAGCTTTCCAGGCTCATACTGCAGACCACTAGCCACACGCTCAGGCTTGCCCTTGCTCGTTTACT--AAACTCCGGTGAACC--------CATTCCCCATAGAC------AAGCAGCCCCCGAATCCCAGGCAAGTGCCAGCTGATGTGTCACCTT-----GAGAGCTCCTGCCTTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22228017 323 + 158406734 CAAAGACACCATTCATCATACCTCCCACTGACACAAA-GTCCTACCCTAATACACATGATAATCCTGTTGTTACCTTCTCAAGGAGGGCAAGTTGGCCCAAACTGTGTGCACCCAGGAGGAGGTGAAGATCAAAGAC---------------CCAGGGAAACAGGG--------------------TGGAGCTGT---CAGCAAAGCAGCTTTCCAGGCTCACACTGCACACCACTCCCCACA-GTTCCAGCTTGCCCTTGCCCCTTTACTAAAAACTCTGGTGAAC---------CACTTTCCATAGACCAGATGAAGGAGCACCCAAGCCCCAGGCAAGTGCCAGC--AAGTGTCACCTT--------AGCTCCTGCCTT-
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54400086 360 +  91889043 CAGGGGCACCAGCCATTCTACCTCCCACCCAC---AATGCCCAACCCTCAAACACATGAGGA-----GTGTTACCCTTTCAAGACAGGTTCATTAGCCCAGATTGTGTGTACCAGGGAGAGGGTG-------AGGATCAAGCTCAGGTTACACCAGGTGAGGAGGAAAGCATCTCCTGACTTCACCTGAAGCTACAGTTGGTACTAGGGCCTGCCAGGACTAAGCAGGATGGGGCTGGCAAGCAGCATAGCCACGTGGCT-CACCTCTCCA--ATACACATGTCAGTCTGTATGGGCACCGCCCAGAAGCCACTTACAGAAGCTCAC--ACTGCAG---AGCGCTCCTCAGGATTTCTCCCTTGAGAAAGAACTCCTGCCCTT
i canFam3.chr3              N 0 C 0
e panTro4.chr15              80106051 1177 +  99548318 M

a score=88171.000000
s hg38.chr15_KI270850v1_alt    325819 39 +    430880 -CCTCTACCCACACACAACTGCAAAGATGACACAGGCAAG
s ponAbe2.chr15_random       10115984 39 +  10928107 -CCTCTACCCACACAGAACTGCAAAGATGACACAGGAAAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17188050 39 - 121039945 -CCTCTACCCACACACAACTGCAAAGATGACACAGGCAAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106669765 35 - 170124641 -----TACCCACACACAACTGCAAAGATGACACAGGAAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108403570 35 - 171882078 -----TACCCACACACAACTGCAAAGATGACACAGGCAAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              88129 39 +    130206 -ACTCTACCCACACACAACTGCAAAGATGACACAGGCAAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21092703 39 -  24206276 -ACTGTACCCACACACAACTGCAAAGATGACACAGGTAAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22228340 35 + 158406734 -----TTCCCACATACAGCTGCAAAGATGACACAGGCAAG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81342692 39 + 145441459 -CCTCCACCCGACCCTAACAGCAAGAACAATACAGACAAA
i mm10.chr7                 N 0 C 0
s canFam3.chr3               54400446 35 +  91889043 AGCACTACTGGCACCCAACC-CACACAGGACACAAG----
i canFam3.chr3              C 0 C 0
e panTro4.chr15              80106051 1177 +  99548318 M

a score=647124.000000
s hg38.chr15_KI270850v1_alt    325858 164 +    430880 GCTGTTGTCCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTCAGTGAGCAGTTACT--
s panTro4.chr15              80107228 163 +  99548318 GCTGTTGTCCCAGATTTATTGAAA-TAATACAGCACTACAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTCAGTGAGCAGTTACT--
i panTro4.chr15             M 1177 C 0
s ponAbe2.chr15_random       10116023 164 +  10928107 GCTGCTGTCCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTCAGTGAGCAGTTACT--
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17188089 164 - 121039945 GCTGTTGTCCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAATGAGAAAAT--GGATTCAGTGAGCAGTTACT--
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106669800 164 - 170124641 GCTGTTGTCCCAGATTTATTGAAAATAATATAGCACTGCAGAAAAAATTCAAACAGGACCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTCAGTGAGCAGTTACT--
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108403605 164 - 171882078 GCTGTTGTCCCAGATTTATTGAAAATAATATAGCACTGCAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTCAGTGAGCAGTTACT--
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              88168 164 +    130206 GCTGTTGTCccagatttattgaaaataatatagcACTGCAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTCAGTGAGCAGTTACT--
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21092742 164 -  24206276 GCTGTTGTCCCAGATTTATTGAAAATAATATAGCACTGCAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTCAGTGGGCAGTTACT--
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22228375 132 + 158406734 GCTGTTGTCCCAGGTTTATTGAAAATAATACAGCATTG--------ATTCAAACAGGTCCCCGAGGTGTTTTGAAGTTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGATAGACTGCCAAAATCCTGGAATGAGA----------------------------
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81342731 153 + 145441459 CTTGTTTT--CAGGTTTATTGAAA---ATATGGCATAACAGA------TTAAACAGCTCCACGTGGTGTTTTGAAATTCATGCCAACTGTAGGCTGAGTGACCTGAAGGTTAGAGAGACTGCCAAAGTCCTGCAACAAAACAAG--ACACACGGTGAGCGGGCACT--
i mm10.chr7                 C 0 I 826
s canFam3.chr3               54400481 167 +  91889043 GTTGTTGTCCAAGGTTTATTGAAGATATTACAGCACAGCAGA-AAGATTCAAACAGCTCCCCGTGGTGTTTTAAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGGCTTCCAAAGTCCTGGAAAAACAAAGTTAAGATTCAGTGTGGTTCTGTATT
i canFam3.chr3              C 0 C 0

a score=1465671.000000
s hg38.chr15_KI270850v1_alt    326022 522 +    430880 GGTGAGATCTGTGAGTGGACCCCAGAAGAAAACACAG------------GCCCCTAGAGCCACAGCA---CTCTCAAGGGGGTCCAGAGGCGACCTGAAGGACCCTT-----TAAGAGCCAACAGGGTTCTCAATGCCTCCCACTTTTCCAGAGTGATCTTCCTTCAACACACACCTGAC---CATGTGGTATCCCCATTTACAAC----TCTATGACTTTTACCCAATGTACCATGCCATTTG---TATCTGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCgtttctcaatcttggcaacgtagacatcctgggctggacattctttgttataggcagctgtactgtgtattgcagaaagtttagcaacatccttggcctctaccccttagaagttagcaggtatcccctggctatgagaacgaa------a--aatgtgtctggacattgccaaatgtcctctaaagcaaaactctgtccctttgagaaT----------------ACACAGTGCCACTTGCTTTCCAGGACCAGCCCTGGGTAAGAGCTATTACTAATCTAATC
s panTro4.chr15              80107391 522 +  99548318 GGTGAGATCTGTGGGTGGACCCCAGAAGAAAACACAG------------GCCCCTAGAGCCACAGCA---CTCTCAAGGGGGTCCAGAGGCGACCTGAAGGACCCTT-----TAAGAGCCAACAGGGTTCTCAATGCCTCCCACTTTTCCAGAGTGATCTTCCTTCAACACACACCTGAC---CATGTGGTATCCCCATTTACAAC----TCTATGACTTTTACCCAATGTACCATGCCATTTG---TATCTGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCgtttctcaatcttggcaacgtagacatcctgggctggacattctttgttataggcagctgtactgtgtattgcagaaagtttagcaacatccttggcctctacccattagaagttagcaggtatcccctggctatgagaacgaa------a--aatgtgtctggacattgccaaatgtcctctaaagcaaaactctgtccctttgagaaT----------------ACACAGTGCCACTTGCTTTCCAGGACCAGCCCTGGGTAAGACCTATTACTAATCTAATC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10116187 521 +  10928107 GGTGAGATCTGTGGGTGGACCCCAGAAGAAAACAGAG------------GCCCCTAGAGCCACAGCA---CTCTCAAGGGGGTCCAGAGGCGACCTGAAGGACCCTT-----TAAGAGCCCACAGGGTTCTCAATGCCTCCCACTTTTCCAGAGTGATCTTCCTTCAACACACACCTGAT---CATGTGGTATCCCCATTTACAAC----TCTATGACTTTTACCCAATGTACCATGCCATTTG---TATCTGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCAtttctcaatcttggcaacgtagacatcctgggctggacattgtttgttataggcggctgcattgtgtattgcacaaagtttagcaacatccttggcctctacccattagaagttagcaggtattccctggctatgagaat-ca------a--aatgtgtctggacattgctaaatgtcctctaaagcaaaactctgtccctttgagaaT----------------ACACAGTGCCACTTGCTTTCCAGGACCAGCCCCGGGTAAGAGCTATTACTAATCTCATC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17188253 525 - 121039945 GGTGAGATCTGTGGGTGGACCCCAGAAGAAAACAGAG------------GCCCCTAGAGCCACAGCA---CTCTCAAGGGGGTTCAGAGGCGACCTGAAGGACCCTT-----TAAGAGCCAACAGGGTTCGCAGTGCCTCCCATTTTTCCAGAGTGATCTTCCTTCAACACACACCTGACCATCATGTGGTATCCCCATTTACAAC----TCTATGACTTTTACCCAATGTACCATGCCACTTG---TATCTGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCgtttctcaatcttggcaacgtagacatcctgggctggacattctttgttaaagggggctgtactgagtattgcagaaagtttagcaacatccttggcctctacgcattagaagttagcaggtattccctcgctatgagaaccaa------a--aacgtgtctggacaatgccaaatgtcctctaaagcaaaactctgtccctttgagaaT----------------ACACAGTGCCACTTGCTTTCCAGGACCAGCCCCGGGTAAGAGCTATGACTAATCTAATC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106669964 534 - 170124641 GGTGAGATCTGTGGGTGGGCCCCAGAAGAAAACAGAGGGCCTTCTCCCTGCCCCTAGAGCCACAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGACCCTTTACTCTAAGAGCCAACAGGGGCCTCAATGCCTCCCACTTTTCCAGTGTGATCTTCCTTCAACACACACCTGAC---CGTGTGGTATCCCCATTTACAAC----TCTACGACTTTCACCCAATGTACCATACCATTT------TCTGTTTTCGCAACCCCTTCCT----ATCACTCAAAAACACCAtttctcaatcttggcaatgtagacatcctgggctggacattctttgttacagggagctgtcctgtgcattgcagaaagtttagcaacatccttggcctctatccattagaaattagcaggtatccccttgctatgagaaccaa------aacaatgtgtctggacattgccaaatgtgctctaagacaaaactctgtccctttgagaaT----------------ACACAGCGCCACTTGCTTTGCAGGACCAGCCCCAGGTAACAGCTATTACTAATCTAATC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108403769 529 - 171882078 GGTGAGATCTGTGGGTGGGCCCCAGAAGAAAACAGAGGGCCTTCTCCCTGCCCCTAGAGCCACAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGACCCTT-----TAAGAGCCAACAGGGGCCTCAATGCCTCCCACTTTTCCAGTGTGATCTTCCTTCAACACACACCTGAC---CATGTGGTATCCCCATTTACAAC----TCTACGACTTTCACCCAATGTACCATACCATTT------TCTGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCAtttctcaatcttggcaatgtagacatcctgggctggacattctttgttacagggagctgtcctgtgcattgcagaaagtttagcaacatccttggcctctatccattagaaattagcaggtatccccttgctatgagaaccaa------aacaatgtgtctggacattgccaaatgtgctctaagacaaaactctgtccctttgagaaT----------------ACACAGTGCCACTTGCTTTGCAGGACCAGCCCCAGGTAACAGCTATTACTAATCTAATC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              88332 534 +    130206 GGTGAGATCTGTGGGTGGGCcccagaagaaaacagagggcCTTCTCCCTGCCCCTAGAGCCACAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGATCCTTTACTCTAAGAGCCAACAGGGGCCTCAATGCCTCCCACTTTTCCAGTGTGATCTTCCTTCAACACACACCTGAC---CGTGTGGTATCCCCATTTACAAC----TCTACAACTTTTACCCAATGTACCATAccattt------tctgttttcacaaCCCCTTCCT----ATCACTCAAAAACACCATTTCTCAATCTTGGCAATGCAGACATCCTGGGCTGGACATTCTTTGTTAcagggagctgtcctgtgcattgcagaaAGTTTAGCAACATCCTTGGCCTCTATCCATTAGAAGTTAGCAGGTATCCCCTTGCTATGAGAACCAA------AACAATGTGTCTGGACATTGCCAAATGTGCTCTAAGACAAAACTCTGTCCCTTTGAGAAT----------------ACACAGTGCCACTTGCTTTGCAGGACCAGCCCCAGGTAAGAGCTATTACTAATCTAATC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21092906 534 -  24206276 GGTGAGATCTGTGGGTGGGCCCCAGAAGAAAACAGAGTGCCTTCTCCCTGCCCCTAGAGCCACAGCA---TTCTCCAGGAGGTCCAGAGGCTACCTGAAAGACCCTTTACTCTAAGAGCCAACAGGGGCCTCAATGCCTCCCACCTTTCCAGTGTGATCTTCCTTCAACACACACCTGAC---CGTGTGGTTTCCCCATTTACAAC----TCTACGACTTTTACCCAATGTACCATATCATTT------TCTGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCACttctcaatcttggcaatgtagacatcctgggctggacattctttgttacagggatctgtcctgtgcattgcagaaagtttagcaacatccttggcctctatccattagaagttagcaggtatccccttgctatgagaaccaa------aacaatgtgtctggacattgtcaaatgtcctctaagacaaaactctgtccctttgagaaT----------------ACACAGTGCCACTTGCTTTGCAGGACCAGTCCCAGGTAAGAGCTATTACTAATCTAATC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22228507 507 + 158406734 GGTAAGATCTGTGAGTGGACCCCAGAAG-AAACAGAAGGACTTCTT---GCCCCTAGAGCCACAGCA---CTCTCAA--AGGTCTAGGAG--ACCTGAAGGACCATTTACTCTAAGAACCACCAGGGACCTCAATG--------------------------CTTCAACACACACCTGAC---TATGTGGCACCCCCACTTAAAACTCCATCTATGACTTTTACCCAACGTACCATACCATTTTTCCTCCATGTTTTCACATCCCCTTCCTGTCAATCACTCTAAAACACCAtttctcaatcttgccaatgtacacctcctgagatggacattctttgttat-gggggctgtcgtgtgcattgcagaaagtttagcaagttccttggcctctacccattagaatttagcaggtatccccttgctatgacaaacaa------a--aatgtatctggacattgccaaatgtcttttaaggcagaattctatccctttgagaaT----------------ACACAGTGC----TACTTTCCAGGACCAGCCCCAGGTAAGACCTATCACTAATCTAATC
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54400648 406 +  91889043 GGTGAGAGCTGTGATTAGTCCCAGGAGC---------------------ACCGCCTGGGACAGGGCAGGTCTGTCCACTAG--CCTGGGGCCAGGTTGGGACCCTAT-----GGAACTCCAACAAGGGCCT--------------------------TCTCCCTGC-CCCCAGAGCTCAC---AAGGGGGTCTACC---TGACAGC-------------------CAAAGGCACATGC-----------------------ACCCC---------AACAGCC----ACACCT-------------------------------------------------AAgggtgctgtcctgtaccctgcagggttttcaa-agcatctccggcctctgcccgctaatggctgtca-gcattcctcagctccaacaaccaaccaacca--aacgtgtccagacctcccccaatgtcc-cgaaggtcaaaatctgttcctttgagaatcaccgCTCTCGGCCACATACAGTGCCATTTCCTTTCCAGGGCCAGACCCATGTAGGAAGAGTCACTAATGCAACT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81342884 826 + 145441459 I

a score=6552.000000
s hg38.chr15_KI270850v1_alt    326544 2 +    430880 AA
s panTro4.chr15              80107913 2 +  99548318 AA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10116708 2 +  10928107 AA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17188778 2 - 121039945 AA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106670498 2 - 170124641 AA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108404298 2 - 171882078 AA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              88866 2 +    130206 AA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21093440 2 -  24206276 AA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22229014 2 + 158406734 AA
i calJac3.chr6              C 0 I 17
e mm10.chr7                  81342884 826 + 145441459 I
e canFam3.chr3               54401054 0 +  91889043 C

a score=40664.000000
s hg38.chr15_KI270850v1_alt    326546 16 +    430880 CATTTGTGAAGGGCCC
s panTro4.chr15              80107915 16 +  99548318 CATTTGTGAAGGGCCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10116710 16 +  10928107 CATTTGTGAAGGGTCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17188780 16 - 121039945 CATTTGTGAAGGGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106670500 16 - 170124641 CGTTTGTGAAGGGCCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108404300 16 - 171882078 CGTTTGTGAAGGGCCC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              88868 16 +    130206 CATTTGTGAAGGGCCC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21093442 16 -  24206276 CATTTGTGAAGGGCCC
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81342884 826 + 145441459 I
e calJac3.chr6               22229016 17 + 158406734 I
e canFam3.chr3               54401054  0 +  91889043 C

a score=267760.000000
s hg38.chr15_KI270850v1_alt    326562 86 +    430880 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCAAACAAGTTCAGGCTGGT---AGGCAGGGCAAGAA
s panTro4.chr15              80107931 86 +  99548318 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCAAACAAGTTCAGGCTGGT---AGGCAGGGCAAGAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10116726 86 +  10928107 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCAAACAAGTTCAGGCTGGT---AGGCAAGGCAAGAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17188796 86 - 121039945 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGCAAGTGCAGACCCTGCCCTCAAACAAGTTCAGGCTGGT---AGGTAGGGCAAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106670516 86 - 170124641 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCGCACAAGCTCAGGCTGGT---GGGCAGGGCAAGAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108404316 86 - 171882078 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCGCACAAGCTCAGGCTGGT---GGGCAGGGCAAGAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              88884 86 +    130206 AAGTACACAAGGCACCAagcagaagggagggaggcaagagCAGACCCTGCCCTCGCACAAGCTCAGGCTGGT---GGGCAGGGCAAGAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21093458 86 -  24206276 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCGCACAAGCTCAGGCTGGT---GGGCAGGGCAAGAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22229033 89 + 158406734 AAGTACCCAGGGCACCAAGCAGAAGGGACGGAGGCAAGAACAGACCCTGCCCTCACACAAGCTCAGGCTGGTGGGGGGAGGGGCAAGAA
i calJac3.chr6              I 17 C 0
e mm10.chr7                  81342884 826 + 145441459 I
e canFam3.chr3               54401054  0 +  91889043 C

a score=843272.000000
s hg38.chr15_KI270850v1_alt    326648 267 +    430880 GCC-AAGGGCCCAACTTATACCTGGAACTCCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAAC-AAAAATGCTGCATTCAGCGCAGTGGTTATTTCAGGAAgaaaagacccacagcggggctgtagctgtactggtgatgtttttctgaagctgggaaagtacatgtgagttcattttgct-actacctttttgagtgtcttaaacatTTAATGACCATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACCGCCCA-
s panTro4.chr15              80108017 266 +  99548318 GCC-AAGGGCCCAACTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT--AGTTTCAAC-AAAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAAgaaaagacccacagtggggctgtagctgtactggtgatgtttttctgaagctgggaaagtacatgtgagttcattttgct-actaccttttTGAGTGTCTTAAACATTTAATGACCATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACCGCCCA-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10116812 268 +  10928107 GCCAAAGGGCCCAACTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAAC-AAAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAAGAAAAGACCCACAGCGGGGCTGTAGCTGTACCGGTGATGTTTTTCTGAAGCTGGGAAAGTACATGTGAGTTCATTTTGCT-ATTACCTTTTTGAGTTTCTTAAACATTTAATGACCATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACCGCCCA-
i ponAbe2.chr15_random      C 0 I 8
s nomLeu3.chr6               17188882 268 - 121039945 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAAC-AAAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAAgaaaagacccacagcggggctgtagctgtactggtgatgtttttctgaagctgggaaagtacacgtgagttcattttgct-attaccttttTGAGCGTCTTAAACATTTAATGACCATAAAAATAGGATAAATGAAGTTGTTCAAAATCGCCAACCGCCCA-
i nomLeu3.chr6              C 0 I 942
s rheMac3.chr7              106670602 268 - 170124641 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAAC-AAAAAAGCTGCATACAGCGCAGTGGTTATTTCAGGAggaaaagacccacagc-gggctgtgcctgtactggtgatgtttttctgaagctgggaaagcacatgtgagttcattttgctaattaccttttTGAGTGCCTTAAACATTTAATGACTATAAAAATAAGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i rheMac3.chr7              C 0 I 566
s macFas5.chr7              108404402 268 - 171882078 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAAC-AAAAAAGCTGCATTCAGTGCAGTGGTTATTTCAGGAGGAAAAGACCCACAGC-GGGCTGTGCCTGTACTGGTGATGTTTTTCTGAAGCTGGGAAAGCACATGTGAGTTCATTTTGCTAATTACCTTTTTGAGTGCCTTAAACATTTAATGACTATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i macFas5.chr7              C 0 I 318
s papAnu2.JH685126              88970 268 +    130206 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAAC-AAAAAAGCTGCATTCAGCGCAGTGGTTATTTCAAGAGGAAAAGACCCACAGC-GGGCTGTGCCTGTActggtgatgtttttctgaagctGGGAAAGCACATGTGAGTTCATTTTGCTAATTACCTTTTTGAGTGCCTTAAACATTTAATGactataaaaataggaaaaatgaagTTGTTCAAAATCACCAACTGccca-
i papAnu2.JH685126          C 0 I 1300
s chlSab2.chr29              21093544 268 -  24206276 GCCAAAGGGCCCACCTTGTACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAAC-AAAAAAGCTACATTCAGCGCAGTGGTTATTTCAGGAGGAAAAGATCCACAGC-GGGCTGTGCCTGTACTGGTGATGTTTTTCTGAAGCTGGGAAAGTACATGTGAGTTCATTTTGCTAATTACCTTTTTGAGTGCCTTAAACATTTAATGACTATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i chlSab2.chr29             C 0 I 304
s calJac3.chr6               22229122 263 + 158406734 GCCAAAGGGCCCAACTTGTTCGTAGAACTT----TC-----CTATTCGGTTCTCAAAAACCCATTT-TAGTTTCCAC-AAAAAAGCTGCATTCAGCACAGTGGCTATTTCAGAAggaaaagatccacagc-aggctgtagttgtactggtgatgtttttctgaagctgggaaggtatatgggagttcattttgct-attatctctttcaaTGTCTTAAAAATTTAATGACCATAAAAATAGGAAACATGAAGTTGTTCAAAATCAGCAACCGCCCA-
i calJac3.chr6              C 0 I 8
s canFam3.chr3               54401054 233 +  91889043 GCC-AAGGGCCTGACACATGCA-GGAATCCAATGTCCCCCTCTATTTTATCCCCCAAAGCCAATTTATAGATGAAACTGAAAAAGTTGCATTCAGGACAGTGGTTACTTCTGAAGCAAACGATCCACCAC-AGACTTT----------------------------------AGAGCACGGAAGTTCATTCTGTTCATTACCTC--TGAATGT----AACATTTCATGATCATAAATA-AGAAAAAATAAAGCTGCTTTAAATCGTGTATTGGACTT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81342884 826 + 145441459 I

a score=1108717.000000
s hg38.chr15_KI270850v1_alt    326915 472 +    430880 TGAAGCCC--ATGCTTTCACCCAAGTATGCAAAAGGACTAAGA-TAAGCCATAGAAAAAACATCAAAGTGCAATGAAGATACTCGTGAACTACCTAAGTAGTGCCTTGTATGTACCTGGAAATGGACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAAGAAAAGCAGGCAGATT-------CAGCCAGGGCTGACACAA--AGGGGGCAACGTAAG--CCAGCTATAAAACCAAGAACAGA--AGCAGCCAAGAGAGAAAAGGTGTCCTGGAA--------------GCCACTAGATTTGGGAATCATGATCTTGTGGCGAACTAACT-CAA-----TGCACACAACT--------------TCCGCTACACCCCTTATGAAAGCAGTCCAGTTTAGTGGCTACAAgtttagatgggattcccaact---ctgccacttact--------agctg-ggtgaccttggataaTAAG-----------------ACCTACTG--------------------------------------------------ATGGTTTTTGACCAGGAAAATACCAC
s panTro4.chr15              80108283 472 +  99548318 TGAAGCCC--ATGCTTTCACCCAAGTATGCAAAAGGACTAAGA-TAAGCCATAGAAAAAACATCAAAGTGCAATGAAGATACTCGTGAACTACCTAAGCAGTGCCTTGTATGTACCTGGAAATGGACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAAGAAAAGCAGGCAGATT-------CAGCCAGGGCTGACACAA--AGGGGGCAACGTAAG--CCAGCTATAAGACCAAGAACAGA--AGCAGCCAAGAGAGAAAAGGTGTCCTGGAA--------------GCCACTAGATTTGGGAATCATGATCTTGTGGCGAACAAACT-CAA-----TGCACACAACT--------------TCCGCTACACCCCTTATGAAAGCAGTCCAGTTTAGTGgctagaagtttagatgggattcccaact---ctgccacttact--------agctg-ggtgaccttggataaTAAG-----------------ACCTACTG--------------------------------------------------ATGGTTTTTGACCAGGAAAATACCAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10117088 472 +  10928107 TGAAGCCC--ATGCTTTCACCCAAGTATGCAAAAGGACTAAGA-TAAGCCACAGAAAAAACATCAAAGTGCAATGAAGATAGTCGTGAACTACCTAAGTAGTGCCTTGAATGTACCTGGAAATGGACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAAGAAAAGCAGGCAGATT-------CAACCAGGGCTGACACAA--AGGGGGCAACGTAAG--CCAGCTATAAAACCAAGAACAGA--AGCAGCCAAGAGAGAAAAGGTGTCCTGGAA--------------GCCACTAGATTTGGGAATCATGATCTTGTGGTGAGCAAACT-CAA-----TGCACACAACT--------------TCTGCTACACCCCTTATGAAAGCAGTCCAGTTTAGTGgctagaagtttagatgggattcccaact---ctgccacttact--------agctg-ggtgaccttggataaTAAG-----------------ACCTACTG--------------------------------------------------ATGGTTTTTGACCAGGAAAACACCAC
i ponAbe2.chr15_random      I 8 C 0
s nomLeu3.chr6               17190092 472 - 121039945 TGAAGCCC--ATGCTTTCACCAAAGTATGCAAAAGGACTAAGA-TAAGCCACAGAAAAAACATCAAAGTGCAATGAAGATACTCGTGAACTACCTAAGTAGTGCCTTGTATGTACCTGGAAATGGACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAACAAAAGCAGGCAGATT-------CAGCCAGGGCTGACACAA--AAGGGGCAACATAAG--CCAGCTATAAAACCAAGAACAGA--AGCAGCCAAGAGAGAAAAGGTGTCCTGGAA--------------GCCACTAGATTTGGGAATCATGATCTTGCGGCGAGCAAACT-CAA-----TGCACACAACT--------------TCCGCTACACCCCTTATgaaagcagtccagtctagtggctagaagtttagatgggattcccaact---ctgccacttact--------agctg-ggtgaccttggataaCAAG-----------------ACCTACTG--------------------------------------------------ATGGCTTTTTACCAGGGAAATACCAC
i nomLeu3.chr6              I 942 C 0
s rheMac3.chr7              106671436 477 - 170124641 TGAAGCCC--ATGCTTTCACCTAAGTATGCAAAAGGACTAAGATTAAGTCACAGAAGAAACATCAAAGTGCAATGAAGATACCC-TGAATTACCTAAGTAGTGCCTTGTATGTACCTGGAAATGGACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATG--AAGACAGCCAGGGCTGACACAA--AGGGGGCAACCTAAG--CCAGCCATAAGACCAAGAACAGA--AGCAGCCAAGAGAGAAAAGGTATCCTGAAA--------------GCCACTAGATTTGGGAATCATGATCCTGAGGCGAGCAAACT-CAA-----TGCACACAACT--------------TTCGCTACACCCATTATGAAAGCAGTCTAatttagtggctagaagtttagatgggattcccaact---ctgccacttact--------agctg-ggtgaccttggataGTAAG-----------------ACCTACTG--------------------------------------------------ATGGTTTTTGACCAGGAAAATACCAC
i rheMac3.chr7              I 566 C 0
s macFas5.chr7              108404988 477 - 171882078 TGAAGCCC--ATGCTTTCACCTAAGTATGCAAAAGGACTAAGATTAAGTCACAGAAGAAACATCAAAGTGCAATGAAGATACCC-TGAATTACCTAAGTAGTGCCTTGTATGTACCTGGAAATGGACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATG--AAGACAGCCAGGGCTGACACAA--AGGGGGCAACCTAAG--CCAGCCATAAGACCAAGAACAGA--AGCAGCCAAGAGAGAAAAGGTATCCTGAAA--------------GCCACTAGATTTGGGAATCATGATCCTGAGGCGAGCAAACT-CAA-----TGCACACAACT--------------TTCGCTACACCCATTATGAAAGCAGTCCAatttagtggctagaagtttagatgggattcccaact---ctgccacttact--------agctg-ggtgaccttggataGTAAG-----------------ACCTACTG--------------------------------------------------ATGGTTTTTGACCAGGAAAATACCAC
i macFas5.chr7              I 318 C 0
s chlSab2.chr29              21094116 477 -  24206276 TGAAGCCC--ATGCTTTCACCCAAGTATGCAAAATGACTAAGATTAAGTCACAGAAGAAACATCAAAGTGCAATGAAGATACCC-TGAATTACCTAAGTAGTGCCTTGTATGTACCTGGAAATGGACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATG--AAGAGAGCCAGGGCTGACACAA--AGGGGGCAACCTAAG--CCAGCCATAAGACCAAGAACAGA--AGCAGCCAAGAGAGAAAAGGTATCCTGGAA--------------GCCACTAGATTTGGGAATCATGATCCTGAGGCGAGCAAACT-CAA-----TGCACACAACT--------------TTCGCTACACCCATTATGAAAGCAGTCCAATTTAGTGgctagaagtttagatgggattcccaact---ctgccacttact--------agctg-cgtgaccttggataGTAAG-----------------ACCTACTG--------------------------------------------------ATGGTTTTTGACCAGGAAAATACCAC
i chlSab2.chr29             I 304 C 0
s calJac3.chr6               22229393 478 + 158406734 TGAAGCCC--ATGCTTTCACCCAAGTATGTAAAAGGACTAAAA-TAAGCTACAGAAGAAACATCAAAGTGCAATGAAGATACTCATGAACTACCTACATACTGCCTTGTATGTATCTGGAAATGGACCACAGCTCATTTCTGAGTGGTGAGCATGGAGATACCA----AATGCCACTTCAGAAGGAAAGCGAACAGAATA--AGGACAGCGAGGGCTGACACAAGGGGGGGGCAACATATG--CCAGCCACAAAACCAAGAACAGA--AGCAGCTGAGAAGGAAAGGGCGTCCTGGAA--------------GCCACTGGATTTGAGAATTACGATCTTGTGGTGAGCAAACTCCAA-----TGCAAACGACT--------------TTCACTACACCCATTATGAAAGCAGTCCAGTTTACTGGCTAGAAGTTTAGATGGGATTTCCAACTTTGCTGCCACTTACT--------GGA-G-GGTGCCCTTGGATAATAAG-----------------AACTACTG-------------------------------------------------AATGGTTTTTGATCAGGG-AATACCAT
i calJac3.chr6              I 8 C 0
s canFam3.chr3               54401287 533 +  91889043 TGAAGCCACGGTACCTTCACTGAACTATGTAAA---ACTAGAG-AAGCCTCCAGAAGAAAGCTCAA---------------------------CTATACG-------GTAAGCATGTGGAAAGG----AGAGCGCAGTTCTGAGTGGTCAGCATACAGACA-----------------CGGAGTGAAGGCATGAAGGATGAAAAGACAACCAGAGCTGGAACCA--TGGAGGCCAATGGAGGAGCAGCCACAGGGGCAGGGAGCGAACAGGAGAGAAGGGAGGAGGAGAGTCCTGCAAGTCATGGGGGAATGGCTACTGGCTCTGGGAGCCCTCTTCCTGCGCAGCGGCATCT-CTACCTTCCAcaaccaaccaaccaaccaaccaaccaaccaaccCCATTCTGGAGGCAGTCT-GTCCAGTGGTTAGCAGTGTAGACGGAATTCCCACCC---CTGCCACCCACTCATCTTCCAGTTACCATTTCCTCGGGCAGCAAAGGTAGGTACTAGGGTGTGCCTCCTGGGGCACCACGAGGACAAAGGACATGGTGGAACACCCCAGAGCGAGCTAGGATGGTCCCTGACCAGGG--ATGCTGC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81342884 826 + 145441459 I
e papAnu2.JH685126              89238 1300 +    130206 I

a score=142991.000000
s hg38.chr15_KI270850v1_alt    327387 43 +    430880 TTTAGGAATCCAGCAAACACTTACCAAAAGCTTCAGCATTTCC
s panTro4.chr15              80108755 43 +  99548318 TTTAGGAATCCAGCAAACACTTACCAAAAGCTTCAGCATTTCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10117560 43 +  10928107 TCTAGGAATCCAGCACACACTTACCAAAAGCTTCAGCATTTCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17190564 43 - 121039945 TTTAGGAATCCAGCAAACACTTACCAAAAGCTTCAGCATTTCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106671913 43 - 170124641 TTTAGGAATCCACCAAACACTTACCAAAAGCTTCAGCATTTCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108405465 43 - 171882078 TTTAGGAATCCACCAAACACTTACCAAAAGCTTCAGCATTTCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21094593 43 -  24206276 TTTAGGAATCCACCAAACACTTACCAAAAGCTTCAGCATTTCC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22229871 43 + 158406734 TTTATGAATCCAGCAAACACTTACCAAAAGCTTCAGCATTTCC
i calJac3.chr6              C 0 I 285
s mm10.chr7                  81343710 43 + 145441459 TTCAAGGATTCAGGCAACACTCACCAGGAGCTTCAGCATCTCC
i mm10.chr7                 I 826 C 0
s canFam3.chr3               54401820 40 +  91889043 TGGAGGAAC---ACCAACACTTACCAAGAGTTTCAACATCTCC
i canFam3.chr3              C 0 C 0
e papAnu2.JH685126              89238 1300 +    130206 I

a score=643129.000000
s hg38.chr15_KI270850v1_alt    327430 263 +    430880 TTAGTGTCAGGATCTACTTCAATAATCTCCTGATCCAAGGCTGAGACCTA-CAAGGAAACGAGGTAGGGTCAAAATACCAATCAATGAGATTATCACTCACCT---CTCCTCCTC----CTCTC----CCCAGGTTC-TTAAATATGGGGAAGAGGAGC---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGTGAG---CAGTCTC-TTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGCCTTACCTTC-CCATGCCCTC----------ATTCAGTATTCAGAACACTT
s panTro4.chr15              80108798 263 +  99548318 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAAGGCTGAGACCTA-CAAGGAAACGAGGTAGGGTCAAAATACCAATCAATGAGATTATCACTCACCT---CTCCTCCTC----CTCTC----CCCAGGTTC-TTAAATATGGGGAAGAGGAGC---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGTGAG---CAGTCTC-TTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTC-CCATGCCCTC----------ATTCAGTATTCAGAACACTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10117603 266 +  10928107 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAAGGCTGAGACCTA-CAAGGAAATGAGGTAGGGTCAAAATACCAATCAATGAGATTATCACTCATCTCTCCTCCTCCTC----CTCTC----CCCAGGTTC-TTAAATATGGGGAAGAGGAGC---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCGAG---CAGTCTC-TTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTC-CCATGCCCTC----------ATTCAGTATTCAGAACACTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17190607 265 - 121039945 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAAGGCTGAGACCTA-GAAGGAAACGAGGTAGGGTCAAAATACCAATCAATGAGATTATCACTCACCT---CTCCTCCTG----CTCTC----CCCAGGTTCTTTAAATATGGGGAAGAGGAGC---TGCACAAGG--ATAGCATT---------------TCTCTTA-AAAGGCGAG---CAGTCTC-TTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTC-CCATGCCCTTA---------ATTCAGTATTCAGAACACTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106671956 271 - 170124641 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCTA-GAAGCAAACGAGATAGGCTCAACATACCAATCAATGAGATTATCACTCACCT---CTCCTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAGAGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTTTC--TACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTC-CCATGCCCTCAAT-ACTACTATTCAGTATTCAGAACACTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108405508 271 - 171882078 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCTA-GAAGCAAACGAGATAGGCTCAACATACCAATCAATGAGATTATCACTCACCT---CTCCTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAGAGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCTC--TACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTC-CCATGCCCTCAAT-ACTACTATTCAGTATTCAGAACACTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21094636 271 -  24206276 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCTA-GAAGCAAACGAGATAGGCTCAACATACCAATCAATGAGATTCTCACTCACCT---CTCCTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAGAGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCTC--TACAGTATTACAGACCTCGATGACCTGTTCTTCTGGTCTTACCTTC-CCAAGCCCTCAAT-ACATCTATTCAGTATTTAGAACACTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22230199 267 + 158406734 TTAGTGTCAGGATCTACTTCAATGATCTCCTGATCCAGGGCTGAGACCTATTAAGGGAACGAGGTAGGCTGAAAATACCAATCTATGAGGTCATCACTCACCT---------CTC----CTTTC----CCCAGGCTC-TTAAACATGGGGAAGAGGGGC----AAACAAGGATATAGCATT---------------CATCTCA-CAAGGTGAG---CAGTCTC-TTAGAGTATTATAGACCCCAACCATCGGTTCTTCTGCTCTTACCTTC-CTATTCCCACATT-ACATCTACTCAGTATTCAGAACATT-
i calJac3.chr6              I 285 C 0
s mm10.chr7                  81343753 265 + 145441459 TTGGTGTCGGGATCCACCTCAATGATCTCCTGATCTAGGGCTGAGACCTG-AGAGGGAAAGAATCAAGTTCAAATTATGAATGCGTG-GGTTATCTTTCACCT---CCTCTGCTC----CCAACGCAACACAtaacc-ttagctgtcctggaaagcaccatgtggaccagg--ctggcttcgagctcagacatctgcctccca-aatgctgaaactaaagctg--tgcaccaccacagcccAC-----TTTATTCTTGTGTCAGAACCATC-TAGTGTGC------------ATTCAG--------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54401860 257 +  91889043 TTAGTGTCAGGATCTACCTCGATGATCTCCTGATCCAGGGCTGAAACCTA-CAAG--AACAGGGCAGGCCCCAAAGACCAATCAGGG-GCTTCTCTCTCTCTC---TCTCTCCCCACCGCTTCT----CCCAGATTC-TTCAATGGAAGAAAACGGGAG------GCAGGG--TCACCCCC---------------CCCCCCACCAAGGTGAG---CAGTCTGCCTACGGGATAA-----------------TTCTTCTACTTTCCCCTTTGTAATTCCCTCCTTCCCACCCAGCCACTTTCCAGAAAACCT
i canFam3.chr3              C 0 I 62
e papAnu2.JH685126              89238 1300 +    130206 I

a score=132454.000000
s hg38.chr15_KI270850v1_alt    327693 71 +    430880 GAAGTCTG-TGTTTACACCAAAGAATACTATATTAGGGGCAAACAATCga-------gccacgacagcagtcatcaaat
s panTro4.chr15              80109061 71 +  99548318 GAAGTCTG-TGTTTACACCAAAGAATACTATATTAGGGGCAAAACATCAa-------gccacgacagcagtcttcaaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10117869 70 +  10928107 GAAGTCTG-TGTTTACACCAAAGAATACTATATT-GGGGCAAACAATCAa-------gccatgacagcagtcatcaaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17190872 71 - 121039945 GAAGTCTG-TGTTTACACCAAAGAATACTATATTAGGTGCAAACAATCAa-------gccacaacagcagtcatcaaat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106672227 78 - 170124641 GAAGTCTT-TGTTTACACCAAGGAATACTATATTAGGGGCAAATGAAAAACCCACGTGCCACGATAGCAGTCATCAAAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108405779 78 - 171882078 GAAGTCTT-TGTTTACACCAAGGAATACTATATTAGGGGCAAATGAAAAACCCACGTGCcacgatagcagtcatcaaat
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21094907 79 -  24206276 GAAGTCTTGTGTTTACACCAAGGAATACTATATTAGGGGCAAATGAAAAACCCACGTGCCACGATAGCAGTCATCAAAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22230466 77 + 158406734 -AAGTCTG-TGTTTACATCAAATAATACTATATTAGGGGCAAACAATCAAAACAAGTGAAACAGCAGCAGTCATCAAAT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81344018 51 + 145441459 -AAAGCAG-GGTTCACACT--TGGATGTCAAGCTA----------------------ACCACGTCGGGAGGCACT--CT
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54402117 62 +  91889043 I
e papAnu2.JH685126              89238 1300 +    130206 I

a score=75802.000000
s hg38.chr15_KI270850v1_alt    327764 40 +    430880 caac---attaagggctc--tcatgaaata-tggaa--tagacttaac
s panTro4.chr15              80109132 40 +  99548318 caac---attaagggctc--ccatgaaata-tggaa--tagacttaAC
i panTro4.chr15             C 0 I 12
s ponAbe2.chr15_random       10117939 43 +  10928107 caacattattaagggctc--tcatgaaata-tggaa--tagacttaac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17190943 43 - 121039945 caacattattaagggctc--tcatgaaata-tggaa--tagacttaac
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106672305 38 - 170124641 CAACATTATTAAGGGCTC--TCATGAAATA-TGGAC--TAAAC-----
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108405857 38 - 171882078 caacattattaagggctc--tcatgaaata-tggac--taaac-----
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21094986 38 -  24206276 CAACACTATTAAGGGCTC--TCATGAAATA-TGGAC--TAAAC-----
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22230543 43 + 158406734 CAACATTATTAAGGGCTC--TCATGAACTA-CAGAA--CAGACTTAAC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81344069 37 + 145441459 CACT--------GGGCTC--CCATGTGAAA-ATGAATTTAGACCTCGC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402179 43 +  91889043 CAGC---ATCCAGGACTCGGCCCTGTAAGACCAGAA--GGGACTTCAC
i canFam3.chr3              I 62 C 0
e papAnu2.JH685126              89238 1300 +    130206 I

a score=409420.000000
s hg38.chr15_KI270850v1_alt    327804 223 +    430880 tggttccagaagagcagaatggaggctaaGAAACTGGTAGGGGGCCTATGGGCACCCACAGCTGGTTATGGAATGTATGGATTAAAG------GT---CTCAG-ATTCA----GCTGAGGT--------------CCCTTTGGAAG------------------CCAAGAACCCATAGCTTTATCATTTGAGGATTAGCC-------AGAAGCCCA----AATATCCAGAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTG
s ponAbe2.chr15_random       10117982 223 +  10928107 tggttccagaagagcagaaTGGAGGCTAAGAAACTGGTAGGGGGCCTATGGGCACCCACAGCTGGTTATGGAATGTATGGATAAAAG------GT---CTCAG-ATTCA----GCTGAGGT--------------CCTTTTGGAAG------------------CCAAGAACCCACAGCTTTATCATTTGAGGATCAGCA-------AGAAGCCCA----AATATCCAGAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17190986 226 - 121039945 tggttccagaagagcagaatggaggctaagaaactcgtagggagCCTGTTGGCACCCACAGCTGGTTATGGAATGTATGGATAAAAG------GTCTCCTCAG-ATTCA----GCTGAGGT--------------CCCTTTGGAAG------------------CCAGGAACCCACAGGTTTATCATTTGAAGATTAGCC-------AGAAGCCCA----AATATCTAGGAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106672343 221 - 170124641 TAGTTCCAAAAGAGCAGAATGGAGGCTAAGAAACTGATAGGGGG-CTATGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAG------GT---CTCAG-ATTCA----GCTGAGGT--------------CCCTTTGGAAG------------------CC-GGAACCCACAGCTTTATCATTCGAGGATTAGCC-------AGAAGCCCA----ATTATCCAGAAAGTTTACCTCGGGAACGTAATTGTCTCTCCTTTCTCTCTCCTCCTCCTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108405895 221 - 171882078 tagttccaaaagagcagaatggaggctaagaaactgataggggg-ctagGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAG------GT---CTCAG-ATTCA----GCTGAGGT--------------CCCTTTGGAAG------------------CC-TGAACCCACAGCTTTATCATTCGAGGATTAGCC-------AGAAGCCCA----ATTATCCAGAAAGTTTACCTCGGGAACGTAATTGTCTCTCCTTTCTCTCTCCTCCTCCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21095024 221 -  24206276 TAGTTCCAAAAGAGCAGAATGGAGGCTAAGAAACTGATAGGGAG-CTATGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAG------GT---CTCAG-ATTCA----GCTGAGGT--------------CCCTTTGGAAG------------------CC-AGAACCCACAGCTTTATCATTCGAGGATTAGCC-------AGAAGCCCA----ATTATCCAGAAAGTTTACCTCAGGAACGTAATTGTCTCTCCTTTCTCTCTCCTCCTCCTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22230586 221 + 158406734 TGGTTGGAAAAGAGTAGAATGGAGGATAAAAAACTAACAGGGGC-CTATGGGCACCTACAGCTGA-TATATAATGTATGGATAAAAG------GT---CTCAG-ATTCA----GCTGAAGT--------------CCCTTTGGAAG------------------CCAGGAACCCATAGCTTTATCATTTGAGGATTAGCC-------AGAAGCCCA----AATATCCAGAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81344106 246 + 145441459 -------AGAGAAGCTCAAGGTCGGCTGA----------------TTACAGGCACCCTCGgctgg-------gtgtgttggcccacgcctttaat---cccagcactcagaaggccgaggtgggtggatctctcatcattttgaggAAATAGATTAAGACTTCACTGACATCCAGCTGCGTTCCCACCTCAGG-TGAGCCCCCAGGAAGAGGTGCAGAGGAAGACCCACAAATCTTACCTCAGGAACGTAGTTATCTCTCCTCTCTCTCTCTTCTTCCTG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402222 181 +  91889043 ---GTCCCGGAAAGGAGAACG-AGGCCATGGTACAGGCAGAGGA--------------CGGCGGG-------GTGCTGTGGTTCAAG------AC---CCTCG----------GCCGAGGG--------------CCCTTCCAGGG---------------TTCTCAGGAGCCT---GATCCATC-CTCGAGGAGCAGCC----------GGCCCT------------GAAAGTTTACCTCGGGCACGTAATTATCCCTCCTTTCTCTCTCCTCCTCTTG
i canFam3.chr3              C 0 C 0
e papAnu2.JH685126              89238 1300 +    130206 I
e panTro4.chr15              80109172  12 +  99548318 I

a score=307461.000000
s hg38.chr15_KI270850v1_alt    328027 89 +    430880 CAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATTCGCTTCATCAGATGCGTGACATAACTACAAAGCACACACAGCCAAAGAG
s ponAbe2.chr15_random       10118205 89 +  10928107 CAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATCCGCTTCATCAGATGCGTGACATAGCTACAAAGCACACATAGCCAAAGAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17191212 89 - 121039945 CAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATCCGCTTCATCAGATGCGTGACATAGCTACAAAGCACACATAGCCAAAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106672564 89 - 170124641 CAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATCCGCTTCATCAGATGGGTGACATAGCTACAAAGCACGCATAGCCAAAGAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108406116 89 - 171882078 CAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATCCGCTTCATCAGATGGGTGACATAGCTACAAAGCACGCATAGCCAAAGAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              90538 89 +    130206 CAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATTCGCTTCATCAGATGAGTGACATAGCTACAAAGCACGCATAGCCAAAGAG
i papAnu2.JH685126          I 1300 C 0
s chlSab2.chr29              21095245 89 -  24206276 CAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATCCGCTTCATCAGATGGGTGACATAGCTATAAAGCACGCATAGCCAAAGAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22230807 89 + 158406734 CAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATCCGCTTCATCAGATGTGTGACATAGCTACAAAGCATACATGGCCAAAGAG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81344352 79 + 145441459 CAACTTGATAGAGATGCCTCTCACAGGCCCTCTCTGAATCCGCTTCATCAGATGCGTGACATAGCTACAAGCAATGC----------GA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402403 88 +  91889043 CAACTTGATGGAGATGCCTCTCACCGGGCCCCGCTGAATCCGCTTCATCAGATGTGTCACATAGCTGCCAAGGAAACGC-GCCCAAGAG
i canFam3.chr3              C 0 I 305
e panTro4.chr15              80109172 12 +  99548318 I

a score=73477.000000
s hg38.chr15_KI270850v1_alt    328116 29 +    430880 AACAGTGAGAAGACAAATCAACTCCCACC
s ponAbe2.chr15_random       10118294 29 +  10928107 AACAGTAAGAAGATAAATCAACTCCCACC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17191301 29 - 121039945 AACAGTAGGAAGACAAATCAACTCCCACC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106672653 29 - 170124641 AACAGTGAGAAAACAAATCAACTCCCACC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108406205 29 - 171882078 AACAGTGAGAAAACAAATCAACTCCCACC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              90627 29 +    130206 AACAGTGAGAAAACAAATCAACTCCCACC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21095334 29 -  24206276 AACAGTGAGAAAACAAATCAACTCCCACC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22230896 29 + 158406734 AACAGTGAGAAGATGAATCAGTTCCCAGC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81344431 20 + 145441459 AACAGTG---------ACCACCTCCCACC
i mm10.chr7                 C 0 I 226
e canFam3.chr3               54402491 305 +  91889043 I
e panTro4.chr15              80109172 12 +  99548318 I

a score=44639.000000
s hg38.chr15_KI270850v1_alt    328145 19 +    430880 TGGTACTGAGCACATGTGC
s ponAbe2.chr15_random       10118323 19 +  10928107 TGGTACTCAGCACATGTGG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17191330 19 - 121039945 TGGTACTCAGCACAGGTGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106672682 19 - 170124641 TGGTACTCAGCACATGTGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108406234 19 - 171882078 TGGTACTCAGCACATGTGG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              90656 19 +    130206 TGGTACTCAGCACATGTGG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21095363 19 -  24206276 TGGTACTCAGCACATGTGG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22230925 19 + 158406734 TGGTACCCAGCACGTGTGG
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81344451 226 + 145441459 I
e canFam3.chr3               54402491 305 +  91889043 I
e panTro4.chr15              80109172 12 +  99548318 I

a score=1751746.000000
s hg38.chr15_KI270850v1_alt    328164 673 +    430880 ATATATAAATACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGAAGAGGACTCACTATCCTGGGACCTCCTACACATAGAACCTCCACTGGCCTGAGCATTCCTTCCCCTTGGTTTCTCACTCTCTATTCAAACTCTCCTTCATGATGATCAAGcgccccacccccaactcgccccgccccgccccgcAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAATTCACATAACTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGGCCATATGCCTATAAATCTCTCGAACAGTAACTGCAACTGTGAAGTAAGCATTAGAAGTTGACATCCAgccgggcgaggtggctcacgcctgtaatcccagcaatttgggaggccgaggcgggcggatcgcttgaggtcaggtgttcgagaccagcctggtcaacattgtgaaaccctgttgtctactaaaaatacaaaaattagccgagtgtggtagcacgtgcctctaatcccagctactgggaaggctgaggcatgacaatcgcttgaacccgggagacggaggttgcagtgagccgagatggcgccactgcactctagcctgggcgccagggcaagattccgtctc-aaaaaaaaaaga---------aaaaaaagaaagaaa--aaaGTTGACAACTAAA
s panTro4.chr15              80109184 673 +  99548318 ATATATAAATACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGAAGAGCACTCACTATCCTGGGACCTCCTACACATAGAACCTCCACTGGCCTGAGCATTCCTTCCCTTTGGTTTCTCACTCTCTATTCAAACTCTCCTTCATGATGATCAAGcgccccaccccccactcgccccgccccgccccgcAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAATTCACATAACTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGGCCATATGCCTATAAATCTCTCGAACAGTAACTGCAACTGTGAAGTAAGCATTAGAAGTTGACATCCAgctgggcgaggtggctcacgcctgtaatcccagcaatttgggaggccgaggcgggcggatcgcttgaggtcaggtgttcgagaccagcctggtcaacattgtgaaaccctgttgtctactaaaaatacaaaaattagccaagtgtggtagcacgtgcctctaatcccagctactgggaaggctgaggcatgacaatcgcttgaacccgggagacggaggttgcagtgagccgagatggcgccactgcactctagcctgggcgccagggcaagattccgtctc-aaaaaaaagaaa---------aaaaaaagaaagaaa--aaagTTGACAACTAAA
i panTro4.chr15             I 12 C 0
s ponAbe2.chr15_random       10118342 662 +  10928107 ATATATAAATACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGAAGAGGAA-CACTATCCTGGGACCTCCTACACATAGAACCTCCGCTGGCCTGAGCATTCCTTCCCTTTGGTTTCTCACTCTCTATTCAAACTCTCCTTCATGATGATCAACCGCCC--CCACCCACTCGCCCCGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAATTCACATAATTTGGCAATTAATA--------TTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTCGAACAGTAACTGCAACTGTGAAGAACGCATTAGAAGTTTACACCCagccgggcgaggtggctcatgcctgtaatcccagcaatttgggaggccgaggcgggcggatcgcttgaggtcaggagttcgagaccagcctggccaacattgtgaaaccctgcc-tctactaaaaatacaaaaattagccgggtgtggtagcacacgcctctaatcccagctactcggaaggctgaggcatgacaatcgcttgaacccgggagacggaggttgcagtgagccgagatggcaccactgcactctagcctgggcgccagagcaagattccgtctc-aaaaaaaa-aaa---------aaaaaaagaaagaaaagaaAGTTGACAACTAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17191349 643 - 121039945 ATATGTAAATACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGGAGACGACTCACTATCCTGGGACCTCCTACACATAGAACCTCCACTGGCCTGAGCATTCCTTCCCTTTGGTTTCTCA--CTCTATTCAAACTCTCCCTC---GTGATCAA---------------------CTGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAATTCACATAATTTGGC----AATACGTTGACTTTGGCACTATTCTTCCAGGCCATATTCCTATAAATCTCTCGAACAGTAACTGCAACTGTGAAGAACGCATTATAAGTTGACACGCAgccgggcgcggtggctcacgtctataatccaagcaagttgggaggccgaggtgggcggatcgcttgaggtcaggagttcgagaccagcctggccaacattgtgaaaccccgtc-tccactaaaaatacaaaaattagccaagtgtggtagcacgtgcctgttatcccagctactcggaaggctagggcatgacaatcgcttgaacccgggaggcggaggttgcagtgagccgagatggcaccactgcactctagcctgggcgccagagcaagattccgtctc-aaaaaaaa-aaa---------aaaaaagaaaagagaagaaAGTTGACAACTAAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106672701 666 - 170124641 ATATATAAATACCCGCTTTAGTTCTTTTCCACAGTGAGAAGAGAGAGGAC----TATACTGGGACCTCCTACACATAGAACCTCCACCGGTCTGAGCATTCCTTCCCTTTGGTTTCTCACTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCTCccc-----cgccccgccccgccccgcAGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAATTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTCGAACAGTAACTGCAACTGTGAAGAACGCATTAGAAGTTGACACCTAgccgggcacggtggctcacgcctgtaatcccaacaatttgggaggc---------cggatcgcttgaggtcaggagttcgagaccagcctggacaacatggtgaaaccc-gtc-tctactaaaaacacaaaaattaggcgggcgtggtggcacgtgcctgtgatcccagctactcggaaggcagacgcaggagaatcgcttgaacacgggaggcagaggttgcagtgggccgagatagcgccactg--ctctagcctgggcgccagggcaagattccctctcaaaaaaaaa-aaagaaagaaaaaaaaaGGAGAAGAAAAGAAAGCTGACACCTAAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108406253 665 - 171882078 ATATATAAATACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGGAGAGGAC----TATACTGGGACCTCCTACACATAGAACCTCCACTGGTCTGAGCATTCCTTCCCTTTGGTTTCTCACTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCTCCCC-----CGCCCCGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAATTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTCGAACAGTAACTGCAACTGTGAAGAACGCATTAGAAGTTGACACCTAgccgggcacggtggctcacgcctgtaatcccaacaatttgggaggc---------cggatcgcttgaggtccggagttcgagaccagcctggacaacatggtgaaaccc-gtc-tctactaaaaacgcaaaaattaggcgggcgtggtggcatgtgcctgtgatcccagctactcggaaggcagacgcaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatcgcgccactg--ctctagcctgggcgccagggcaagattccctctc-aaaaaaaa-aaagaaagaaagaaaaaGGAGAAGAAAAGAAAGCTGACACCTAAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              90675 656 +    130206 ATATATAAATACCCGCTTTAGTTCTTTTCCACAGTGAGAAGAGAGAGGAC----TATACTGGGACCTCCTACACATAGAACCTCCACTGGTCTGAGCATTCCTTCCCTTTGGTTTCTCACTCACTATTCAAACTCTCCTTCATAGTGATCAactccccctcccc-----cgccccgccccgccccgcagTTTCACGACCCTTCAcagccttcattttctttcttccaatttCAAATTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTCGAACAGTAACTGCAACTGTGAAGAACGCATTAGAAGTTGACacctagccgggcacggtggctcacgcctgtaatcccaacaatttgggacgc---------cggatcgcttgaggtcaggagttcgagaccagcctggacaacatggtgaaaccc-gtc-tctactaaaaacacaaaaattaggcgggcgtgggggcacgtgcctgtgatcccagctactcggaaggctgacccaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatcgcgccactg--ctctagCCTGGGCGCCAGGgcaagattccctctc-aaaaaaaa-aaa---------aaaaaagagaagaaaagaaagctgacACCTAAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21095382 666 -  24206276 ATATATAAATACCCGCTTTAGTTCTTTTCCACAGTGAGAAGAGAGAGGAC----TATCCTGGGACCTCCTACACATAGAACCTCCACTGGTCTGAGCATTCCTTCCCTTTGGTTTCTCACTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCCCCTC------------CCCCGCCCCGCCGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAATTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTCGAACAGTAACTGCAACTGTGAAGAACGCATTAGAAGTTGACACCTAgccgggcacggtggctcaggcctgtaattccaacaatttgggaggccggggagggcggatcgtttgaagtcaggagttcgagaccagcctggacaacatggtgaaaccc-gtc-tctactaaaaacacaaaaattaggcgggcgtggtggcacgtgcctgtgatcccagctactcggaaggctgacgcaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatcgcgccactg--ctctagcctgggcgccacggcaagattccgtctc--aaaaaaa-aaagaaagaaaaaaaaaGGAGAAGAAAAGAAAGCTGACACCTAAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22230944 639 + 158406734 ATGT-TAAGTACCCACTTTAATTCTTTTC--CAGTGAGAAGGGAGAGAACTCACTAACCTGGGACCTCCTACACATAGAAGCCCCAATGGCCTGAGCATTCCTTCCCTTTGGTTTCTCA--CTCTATTCAAACTCTCCTTCACTGTGATCAAGA-------------------CCACCCTCCACCATAGCTTCACTACTCTTCACA-CATTCATTTTTTTCCTTACAATTTCAAATTCACATAACTAAGCAATTAATACATTGACTTTGGCACTACTCTTCGGGGCCATATTCGTATAAATCTCTGGAACAGTAATTGCAACTGTTAAGAACGCATTAAAAGTTGACACCTAAccgggcgcggtggcccacttctgtaatcgcagcactttgggaggccgaggcaagcggatcgcatgaggtcagtagttccagatccgcctggccaacacggtgacaccccgtc-tctactaaaagtactaaaattagcaggggatggtggcgcgcgcctgtagtcccagctactcgggaggatgaggcaggagaatcacttgaacccgagaggtggaggttgcagtgagcccagatcgcgctactgcactccggcctggaggacagagcaaga--ctgtctc-aaaaaaag-gaa---------aaagaa-----------aaTGTTGACACCTAAA
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81344451 226 + 145441459 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=679517.000000
s hg38.chr15_KI270850v1_alt    328837 240 +    430880 AGCAACGTAGCTTCAAAGCAAGAGGTCTGACGGTGGCTACC--------TTCGACCCA-GGGTCACCGCGGCCAGTCATGACACAGGCCTAAGTTCACAACAGAAATCCTGCACACGCAGAGCTCTAGCCCTTCTCCGGGACACCAGGGAGTCTCAGGCTAACGAAACCACCAAGGCACCGTCTCTTCCCGAGTCGGAGGGCGGCAGAGCACACAAACAGATCGCGG----------------------AGCCCCGGAGGCCGAGGAAGGC
s panTro4.chr15              80109857 240 +  99548318 AGCAACGTAGCTTCAAAGCAAGAGGTCTGACGGTGGCTACC--------TTCGACCCA-GGGTCACCGCGGCCAGTCATGACACAAGCCTAGGTTCACAAGAGAAATCCTGCACACGCAAAGCTCTAGCCCTTCTCCGGGACACCAGGGAGTCTCAGGCTAACGAAACCACCAAGGCACCGTCTCTTCCCGAGTCGGAGGGCGGCAGAGCACACAGACAGACCGCGG----------------------AGCCCCGGAGGCCGAGGAAGGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10119004 229 +  10928107 AGCAAGGTAGCTTCAAACCAAGAGGTCTGACGGTGGCTACC--------TTCGACCCA-GTGTCACCGCGGCCAGTCATG--ACAGGCCTAAGTTCACAACAGAAATCCTGCACACGCAGAGCTCTAGCCCTTCTCCGGGACACCAGGGAGTCTCAGGCTAACGAAACCACCACTGCACCGTCTCTTCCCGAGTCGGAAGGCGGCAGAGCACACAAACAGACCGCGG----------------------GGCCCCGGAAGC---------C
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17191992 240 - 121039945 CGCAACGTAGTTTCAAGGCAAGAGATCTGACGGTGGCTACC--------TTCGACCCA-GTGTCACCGCGGCCAGCCATGACACAGGCCTAAGTTCACAACAGAAATCCTGCACACGCAGAGCTCTAGCCCTTCTCCGGTACACCACTGAGTCTCAGGATAATGAAACCACCACGGCACCGTCTCTTCCCGAGTCTGAGGACGGCAAACCACACAAACAGACCGCGG----------------------GGCCCCGGAGGCCAAGGAAGCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106673367 239 - 170124641 AGCAACGTAGCTACAAGGCAAGAGGTCTGACGGTGGCTACC--------TCCAACCCA-GTGTCACCGCGGCCAGTCATGACACAAGCCTAAGTTCACAACGGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAG-CTCAAGCTAACGAAACCACCACAGTACCGTCTCTTACAGAGTCGGAGGGCGGCAGAGCACATAAACAGGCCGCGG----------------------GGCCCCGGAGACCGAGGAAGCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108406918 239 - 171882078 AGCAACGTAGCTACAAGGCAAGAGGTCTGACGGTGGCTACC--------TCCAACCCA-GTGTCACCGCGGCCAGTCATGACACAAGCCTAAGTTCACAACGGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAG-CTCAGGCTAACGAAACCACCACAGTACCGTCTCTTACAGAGTCGGAGGGCGGCAGAGCACATAAACAGGCCGCGG----------------------GGCCCCGGAGACCGAGGAAGCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              91331 240 +    130206 AGCAACGTAGCTACAATGCAAGAGGTCTGACGGTGGCTACC--------TCCAACCCAGGTGTCACCGCGGCCAGTCATGACACAAGCCTAAGTTCACAACGGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGAACACAAGGGAG-CTCAGGCTAACGAAACCACCACAGTACCGTCTCTTACAGAGTCGGAGGGCGGCGGAGCACATAAACAGGCCGCGG----------------------GGCCCCGGAGACCGAGGAAGCC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21096048 239 -  24206276 AGCAACGTAGCTACAAGGGAAGAAGTCTGACGGTGGCTACC--------TCCAACCCA-GTGTCACCGCGGCCAGTCATGACACAAGCCTAAGTTCACAACGGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAG-CTCAGGCTAACGAAACCACCACAGTACCGTCTCTTACAGAATCGGAGGGCGGCAGAGCACATAAACAGGCCGCGG----------------------GGCCCCGGAGGCCGAGGAAGCC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22231583 262 + 158406734 AGCAACGTAGCTTCAAAGCAAGAGGTCTGACGATGGCTACC--------TTCGACCCA-GTGTCACCGCGGCCAGTCATAACACAAGCCTAACTTCACAACAGAAATCCTGCACACGCAAAGTTCTAGCCCTTCTCCGGGGCACTAGGGAGGCCCAGGCTAATGAAACCACCACGGCACCGTCTCTTCCCGAGTCGGAGGGCGGCAGAGCACACAAACAGGCCGCGGGACCCCGGGTCTCCACCGTCCAGGCCCTGGAGGCCGAGAGAGCC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81344677 170 + 145441459 AGCAGTAAGGTTTTGAGGCCGGAGCTCTGCCTTCAGCTACCGTAAGGAGCCCGAACTA-AGACCACGTCGGCAAAACCCCACTGTGGCCAAGGCACAC------------------------CTCCAGCCCTTCGGCGGGCCGTCTGGGGG--------GAGCGGA--------GGCACCGGCCC-------------GGGCA----------------------GG----------------------CTCTCCGGCGGCCGCG---GCC
i mm10.chr7                 I 226 C 0
e canFam3.chr3               54402491 305 +  91889043 I

a score=2467479.000000
s hg38.chr15_KI270850v1_alt    329077 704 +    430880 CCGACTCACCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCACTCACGAGCCAGCGCAACCTTCTGGGAAGAGTGCGGCGCCGAGC-CCCGGCCGGTGTGGTTGGGGACCGCCGGCTGCGCTGAGCCGGAGAGGG--CCCGGCTAAACAGTGCCGGGCGCCGGGCTTAATGCGGAAGCCGCCGGCCCGTTGC-GCTCCAGCCTGACAGGGCTCTGCGCCTTCCCGGCCCAGGGCCTCTC--TGTGGGCTGAGGACCGCGGGAAGCTGCAGATGGGGGACGATTGTGGAGGATGGCGGCCTCGAGCCAAAACACCTACCATGTTGGCGGGTCCTTGGTAAAAGAGGAAACAGGAAGCACAGGCGAAGCCTGTTAAAGCTTAGGCCAGAAAGCCGCTTCCGCCCGGCCACGGTCGCTCTGAGCCTACTCGGGAGCCACACAGCGCCCCCTGGCGGAGTGGAGCGGGGGCGGCGGTGGC-GCG-CCCTCCGGTGGGCAGGGTG----TCTGT-CCCGCCCCCGACGGCTCCTC--CC--------------TTTCCGCTC--CCCGCTCCC-CTCGGTTGACTTGG---------GCTCGCTTCT---
s panTro4.chr15              80110097 703 +  99548318 CCGACTCACCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTATTTCTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCACTCACGAGCCAGCGCAACCTTCTGGGAAGAGTGCGGCGCCGAGC-CCCGGCCGGTGTGGTTGGGGACCGCCGGCTGCGCTGAGCCGGAGAGGG--CCCGGCTAAACAGTGCCGGGCGCCGGGCTTAATGCGGAAGCCGCCGGCCCGTTGC-GCTCCAGCCTGACAGGGCTCTGCGCCTTCCCGGCCCAGGGCCTCTC--TGTGGGCTGAGGACCGCGGGAAGCTGCAGATGGGGGACGATTGTGGAGGATGGCGGCCTCGAGCCACAACACCTACCATGTTGGCGGGTCCCTGGTAAAAGAGGAAACAGGAAGCACAGGCGAAGCCTGTTAAAGCTTAGGCCAGAAAGCCGCTTCCGCCCGGCCACGGTCGCTCTGAGCCTACTCGGGAGCCACACAGCGCCCCCTGGCGGAGTGGAgc-ggggcggcggcggc-gcgccccTCCGGTGGGC-CGGTG----TCTGT-CCCGCCCCCGACGGCTCCTC--CC--------------TTTCCGCTC--CCCGCTCTC-CTCGGTTGACTTGG---------GCTCGCTTCT---
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10119233 707 +  10928107 TCGACTCACCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCACTCACGAGCCAGCGCAACCTTCTGGGAAGAGTGCGGCGCCAAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGCTGAGCCAGAGAAGG--CCCGGCTGGACAGTGCCGGGCGCCGGGCTCAATGCAGAAGCCGCCGGCCCGTTGC-GCTCCAGCCGGACAGGGCTCTGCGCCTTCCCGGCCCAGGGCCTCTCTTTGTGGGCTGAGGACCGCGGGAAGCTGCAGATGGGGGACGATTGTGAAGGATGGCGGCCTCGAGCCAAAACACCTACCATGTTGGCGGGTCCTTGGTAAAAGAGGAAATAGGAAGCACAGGCGAAGCCTGTTAAAGCTTAGGCCAGAGAGCCGCTTCCGCCCGGCCCCGGGCGCGCTGAGCTTACTCGGGAGCCACACAGCGCCCCCTGGCGGAGTGGAGCGGGAGCGGCGGCGGC-TCGCCCCTCCGGTGGGCAGGGTG----TCTGT-CCCGCCGCCGACGGCTCCTC--CC--------------TTTCCGCTC--CCCGCTCCC-CTCGGTTGACTTGG---------GCTCGCTTCT---
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17192232 708 - 121039945 CCTACTCTCCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAAGGGGTATCTCCTCCCACACGCTCTTGTTCGTGTGGAAGACATTGCCCATGCCCGTGTATTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAATGCGGCCCTGCGGCT-GGATAGGACCGGATCACTCGCGAGCCAGCTTGTCCTTCTGGGAATAGTGCTTCTCCCAATGCCCGGTCCGTGTGGTTGGGCACTCTGCCTTGCATCGAGGCTGATAAGT--ACCATATGCATAGATGGTGTTGCCTATATCAGTACGGAAGCCGCCGGCCCGTTGC-GCTCCAGCCTGATAGGGCTCCGCGCCTGCCCGGCCCAGGGCCTCTCTCTGTGGGCTGAGGACCGCGGGAAGCTGCAGATGGGGGACGACTGTGGAGGATGGCGGCCTCGAGCCAAAACACCTACTATGTTGGCGGGTCCTTGGTAAAAGAGGAAACAAGAAACACAGGCGAGGCCTATAAAAGCTTAGGCCAGAAAGCCGCTTCCGCCCGGCCCCGGGCGCGCTGAGCCTACTCGGAAGCCACACAGCGCCCCCTGGCGGAATGGAGCGGGAGCGGCGGTGGC-GCGCCCCTCCGGCGGGCAGGGTG----TCTGT-CCCGCCCCCGACGGCTCCTC--CC--------------TTTCCGCTC--CCCGCTCCC-CTCGGTTGACTTGG---------GCTCGCTTCT---
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106673606 706 - 170124641 CCGACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAATACTTCTCTATGATAACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGTACAGGATCACTCACGAGCCAGTGCAACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCGGCTGGGCACTGCCGGACGCCGGGCTCAATGCGGAAGCTGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGCTCCGCGCCCGCCCGGCCCAGGGCCTCTTTTTGTGGGCTGAAGACCGCGGTAAGCTGCAGATGGAAGACGATTATGGAGGATGCCGGCCTCGACCCAAAACACCTACCATGTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTACCGGGCGCGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTGGCGGAGTGGGGCGGAAGCGGCGGCGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC--CC--------------TTTCCGCTC--CCCGCTCCCTCTTGGTTGACTTGG---------GCTAGCTTCT---
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108407157 706 - 171882078 CCGACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAATACTTCTCTATGATAACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCACTCACGAGCCAGTGCAACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGACGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCGGCTGGGCACTGCCGGACGCCGGGCTCAATGCGGAAGCTGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGCTCCGCGCCCGCCCGGCCCAGGGCCTCTTTTTGTGGGCTGAAGACCGCGGTAAGCTGCAGATGGAAGACGATTATGGAGGATGCCGGCCTCGACCCAAAACACCTACCATCTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTACCGGGGGAGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTGGCGGAGTGGGGCGGAAGCGGCGGCGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC--CC--------------TTTCCGCTC--CCCGCTCCCTCTTGGTTGACTTGG---------GCTAGCTTCT---
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              91571 706 +    130206 CCGACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTCTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCACTCACGAGCCAGTGCAACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGACCCGGCTGGGCACTGCCCGAAGCCGGGCTCAATGCGGAAGCTGCCTTcccgctgc-gctccagcctgacaGGGCTCCGCGCCTGCCCGGCCCAGGGCCTCTTTTTGTGGGCTGAAGACCGCGGTAAGCTGCAGATGGAAGACGATTATGGAGGATGCCGGCATCGACCCAAAACACCTACCATGTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTACCGGGCGCGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTGGCGGAGTGGGGCGGGAGCGGCGGCGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC--CC--------------TTTCCGCTC--CCCGCTCCCTCTTGGTTGACTTGG---------GCTAGCTTCT---
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21096287 706 -  24206276 CCGACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTCTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCACTCACGAGCCAGTGCAACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCGGCTGGGCACTGCCGGACGCCGGGCTCAACGCGGAAGCTGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGTGCCGCGCCCGCCCGGCCCAGGGCCTCTTTTCGTGGGCTGAAGACCGCGGGAAGCTGCAGATGGAAGACGATTGTGGAGGATGCCGGCCTCGACCCAAAACACCTACCATGTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTACCGGGCGCGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTGGCGGAGTGGGGCGGGAGCGGCGGCGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC--CC--------------TTTCCGCTC--CCCGCTCCCCCTTGGTTGACTTGG---------GCCAGCTTCT---
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22231845 696 + 158406734 CCAACTCACCCTGCTATCTTGTTGCGTAGCTTCTTGCTAGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCACTCATTAGCCACCGCAAACTTCCGGGAAGAGTGCGACTCCAGGC-CCCAGCGGGAGTGG-TGGAGGCTGCCGGCTGCGCTG-------GAGGG--CCCGGCTGGGCAGTA-CGGGCGCCAGGCTCAATGCGGAAGCCGCCGGCCCGCTGC-GCTCCAGCCTGACAGGGCCCCGCGCCCGCCCGGTCCAGAGCCTTTCTTTGTGGGCTGGGGACCGCAGGAAACTGCAGATGGAGGACGATTGAAGAGGATGGCGGCCTCGGGACAAAATACCTACCATGTTGGCGGGTCCTTAGTGAAAGAGGAAACCGGAACCACAAGCGAGGCCTATTAAAGCTTAGGCCAGAGAGCCGCTTCCGGCCGGC-CCGGGGGAGCCGAACCTACGTGGGAGCCACACAgcggcccctggcggagcggggcgggagcggcggcggc-gcgcccccACGGAGGGAGGGTTA----TCTGT-CCCGCCCTCGACGGCTCCTC--CC--------------TTTCCGCTC--CCCGCCCCCGCTTGGTTGACTT-----------GTTCGCTTCT---
i calJac3.chr6              C 0 I 313
s mm10.chr7                  81344847 572 + 145441459 CCCACTCACCCGGCTATCTTGTTCCGAAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTGGTGTGGAAGTCATTACCCAGACGCGTGTAGTACTTCTCGATGATGACCCGGGCAGCCTTCTTCACGGTCTTGGTGCGAACGCGGCCCTGAGGGT-GGAGAGGGCAAAGTCACCGGGGAGCCCGCGC----------------------------C-TCCCGCG------------------------------------GAGGGGCCGCGGC-------------GCGCACGACTTCATGCGGAA--------------GC-GCGCCAGGCCGCCGGTG-ACGGCGCC------------GGCCCCTCGCTGCGGACTTGAGGCCGCGACGAGCGGAGGATGGGCGAGGATTGAAAAGGACAGAGCCCTGGGAGCCAAACACCTACCATGTTGGCGGGT-CTCGGTAAAAGAGGAAACAGGAAACACAAGAGAGGCCTAT-AAAGCGC-GGCCAGAAAGCCGCTTCCGCCTGGCT------------------CGCGAGAGTCCCACAGCGGCCCCTAGCGGAGTGGAGTGAGGCTG-------------CCTGGCTGTGGGCGGGGCGAAAGTCTGCGCGTGCGCACGCCGGCAGCTCGGCC--------------GTCTTGGTT--TCCACTCCA-AATAGTT----------------CCGTGCTTCT---
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402796 678 +  91889043 CCAGCTCACCCTGCGATCTTGTTGCGGAGCTTCTTGCTGGGGATGATGGCAATCTCCTCGCACACGCGCTTATTGGTGTGGAAGTCGTTCCCCAGGCGCGTGTAGTACTTCTCGATGATGACTCGGGCCGCCTTCTTCACGGTTTTGGTGCGCACGCGGCCCTGCGGGTGGGAGAACACGGCGTCACCCGCGAGCCACGACAGCC------------------------C-TCCGACGGCAgcgg------------ggcagggccgagcgcgggccgg--gccggccgga---------gcgcggggcTCAGCGCCGAGGCCAGTGGCCCGCGGAGGCTTGGGCCTGACGGGGCCCTGCGCCCTTCC----------------TCGAGAGCTGGGGGCCGCGGAAAGCAGCGGATGGACGACGATTGTAGGGGACGAGGGCCTCGGGCCAAGATACCTACCATGTTGGCGGGT--ATAGTAAAAGAGGAAACAGGAAGCACAAGCGAGGCCTAT-AAAGCGCGGGCCAGAAAGGCGCTTCCGCCGAACCCGGGACACGCAGAGCCGGCTCCGGAGCTCCACAGCGACCCCCGGCGGCGCGGGGCGGAAGTGCAGGAGGCTGCCACCACCTGGTgggcggggcgagggcctgg-cccgccccgccccgccccTC--TCCCCCATGGGCGTGGctcccgcccctcccgcccct-cccgccTCTCTTAGGGTTCATCAGCCCGCGGTTGCT
i canFam3.chr3              I 305 C 0

a score=842841.000000
s hg38.chr15_KI270850v1_alt    329781 295 +    430880 ----CTCCCCCATCTGATTTTTA--ATGGGACCGCCCGTGCGATGTGCTCTAGCGTAG----CGTCCATCTCTTCCACACACGCCAGGGAGAGGA-GAAGCATCCGGTCCTCGGGAGGACCGAGAAAAGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGCGGCCGCCCAGGTCCCCCACTCAGTCCGCGGGCCGGAGACTTGTCAGGT--------AGAGACAGGGTGCGACTGGGCGAGACGTATctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
s panTro4.chr15              80110800 293 +  99548318 ----CTCCCCCATCTGATTTTTA--ATGGGACCGCCTGTGCAAAG-GCTCTAGCGTAG----CGTCCATCTC-TCCACACACGCCA-GGAGAGAATCAAGCGTCCGGTCCTCGGGAGGACCGAGAAAGGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGCGGCCGCCCAGGTCCCCCACTCAGTCCGCGGGCCGGAGACTTGTCAGGT--------AGAGACAGGGTGCGACTGGGCGAGACGTATctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10119940 299 +  10928107 ----CTCCCCCATCTGATTTTTA--ATGGGACCGCCCGTGCGATGTGCTTTAGCGTAGGAGCCGTCCATCTCTTCCACACACGCCAGGGAGAGGA-GAAGCATCCGGTCCTCGGGAGGACCGAGAAAGGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGCGGCCGCCCAGGTCCCCCACTCAGTCCGCGGGCCGGAGACTTGTCAGGT--------AGAGACAGGGTGCGACTGGGCGAGACATGGctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17192940 294 - 121039945 ----CTCCCCCATCTGATTTTTA--ATGGGACCGCCCGTGTGATGTGCTCTAGCGTAGGAGCCGTCCATCTCTTCCACACACGCCAGGGAGCGGA-GAAGCATCCAGTCCTCGGGAGGACCGAGAAAGGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGCCGCCACCCAGGTCCCCTACTCAGTCCGCGGGCCGGAGATTTGTC-------------GAGACAGGGTGCGACTGGGCGAGACATATctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106674312 296 - 170124641 ----CTCCCTCATCTGATTTTTA--ATGGGACCGCCCGTGTGCTGTGCTCTAGCGTAGGAGCGGTCCATCTCTTCCATACACGTCAGGGAGAGGA-GAGGCATCCGATCCTCGGGAGGACCGAGAAAGGAAGGCGATCCAGGGCCGCGGAACAAT---GAAGTGCGGGATGACGGCCGCCCAGGGTCCCCACCCACTCCGCTGGCCAGAGACTTGGCAGGT--------AGAGACAGGGTGCGACTGGGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-actttcccttc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108407863 296 - 171882078 ----CTCCCTCATCTGATTTTTA--ATGGGACCACCCGTGTGCTGTGCTCTAGCGTAGGAGCGGTCCATCTCTTCCATACACGTCAGGGAGAGGA-GAGGCATCCGATCCTCGGGAGGACCGAGAAAGGAAGGCGATCCAGGGCCGCGGAACAAT---GAAGTGCGGGATGACGGCCGCCCAGGGTCCCCACCCACTCCGCTGGCCAGAGACTTGGCAGGT--------AGAGACAGGGTGCGACTGGGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              92277 296 +    130206 ----CTCCCTCATCTGATTTTTA--ATGGGACCGCCCGTGTGCTGTGCTCTAGCGTAGGAGCGGTCCATCTCTTCCACACACGTCAGGGAGAGGA-GAGGCATCCGGTCCTCGGGAGGACCGAGAAAGGAAGGAGATCCAGGGCCGCGGAACAAT---GAAGTGCGGGATGACGGCCGCCCAGGGTCCCCACCCACTCCGCTGGCCAGAGACTTGGCAGGT--------AGAGACAGGGTGCGACTGGGAGAGACATATCTCATTTCTTCCGGGCCTTTGCTCAAATGTTTCCTTATCAGAGG-GCTTTCCCTTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21096993 299 -  24206276 ----CTCCCTCATCTGATTTTTA--ATGGGACCGCCCGTGTGCTGTGCTCTAGCGTAGGAGCGGTCCATCTCTTCCACACACGCCAGGGAGAGGA-GAGGCATCCGGTCCTCGGGAGGACCGAGAAAGGAAGGCGATCCAGGGCCGCGGAACAATGAAGAAGTGCGGGATGACGGCCGCCCAGGGTCCCCACCTACCCCGCTGGCCAGAGACTTGGCAGGT--------AGAGACAGGGTGCGACTGAGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22232854 301 + 158406734 ----CTGCCCCATCTGATTTCTA--ATCGGACCGCCCGTGTGATGTGCTCTATTCGAGGAGCGGTCCATCTCTTCCACACATGCTAGGGAGAGGA-GAGGCATCCGGTCCTCGGGATGACCAAGAAAGGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTCCGGGATAACGGCCACCCAGA-CCCCCAGCCAGTGCGCGGGCCAAAGACTT-TAAGGCCTAACC-GGGATACAGGGTGTGCCTGGGAGAGGCATATctcatttct---gggtctttgctcaaatgtcgccttatcagagg-actttcccttc
i calJac3.chr6              I 313 C 0
s mm10.chr7                  81345419 221 + 145441459 -------------CT-----------TGGG------CGTCCGGTGTGTTTTAATCTAGGAGT-----------------TACTTTGAGGTCCTGA-GATGGA----GCCTAAAGGAGGCCCGAGCTATGAAAG------------GCATAGTAGT---AAACAGGGTCATCCCCGATTTCCA----CCCTACCCGCGCCTCTAGTCAGAGATTAGTAGGGT--------CTAGCC-------TAATTGGTGAGGTTCCTCTCATTTCCT---GGTGTCACAGCAAACATCACCT----AGAGT-GGCTTTTCTTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403474 259 +  91889043 TAGGCTCCCT----TGATTCTCAAGACAGGAT----CGTTTGATGTGCCCTGGACTAGAAGGGGTGCATGTCTTCTGCACACGCCCGCGAGACGG----------------------------------AGGGCGATTCGGGAGCGTGGGAAGGTGAGGAGGTAGGGGAGGTGCCCCGCCCAAGACCC------------TGGGCCTCAAGCTTGCCTTTTCTAGCCTGGGGGAGAGGGGGCCACTGAGAGAAGCTGATCTCGTTTCTGCCAAGACT--GCTCAAGTATCACCTCATCAGAGGTGCTCTTTCTTC
i canFam3.chr3              C 0 I 232

a score=160446.000000
s hg38.chr15_KI270850v1_alt    330076 55 +    430880 aaacttaggtaaaataactccctcactatccctg--cttatatttcctagcacttgc
s panTro4.chr15              80111093 55 +  99548318 aaacttaggtaaaataactccctcactatccctg--cttatatttcctagcacttgc
i panTro4.chr15             C 0 I 630
s ponAbe2.chr15_random       10120239 55 +  10928107 aaacttaggtaaaataactccctcactatccctg--cttatatttcctagcacttgc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17193234 55 - 121039945 aaacttaggtaaaataactccctcactatccctg--cttatatttcctagcacttgc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106674608 55 - 170124641 agacttaggtaaaataactccctcactattcctg--cttatatttcctagcacttgc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108408159 55 - 171882078 agacttaggtaaaataactccctcactatccctg--cttatatttcctagcacttgc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              92573 55 +    130206 AGACTTAGGTAAAATAACTCCCTCACTATCCCTG--CTTATATTTCCTAGCACTTGC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21097292 55 -  24206276 agacttaggtaaaataactccctcactatccctg--cttatatttcctaccacttgc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22233155 54 + 158406734 aaacttaggt---ataactccctcactattcctgctcttgtatttctcagcacttgg
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81345640 49 + 145441459 TCATCCCAGCACAGTA--TTCCATTCGAGCTGCT--CTTAAATGTCTGAGCAC----
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54403733 232 +  91889043 I

a score=49343.000000
s hg38.chr15_KI270850v1_alt    330131 17 +    430880 cgtgtgattcggcttat
s panTro4.chr15              80111778 17 +  99548318 CGTGTGATTCGgcttat
i panTro4.chr15             I 630 C 0
s ponAbe2.chr15_random       10120294 17 +  10928107 cgtgtgattcggcttat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17193289 17 - 121039945 cgtgtgattcggcttat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106674663 17 - 170124641 cgtgtgactcggcttat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108408214 17 - 171882078 cgtgtgactcggcttat
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              92628 17 +    130206 CGTGTGACTCGGCTTAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21097347 17 -  24206276 cgtgtgactcggcttat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22233209 17 + 158406734 catttgactcggcttag
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81345689  6 + 145441459 -----------AATTAC
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54403733 232 +  91889043 I

a score=1761719.000000
s hg38.chr15_KI270850v1_alt    330148 547 +    430880 ttttctcaactaggggtgagctccatgacagtaatggtca--ttttgtttagctaattcccagtgcttgaa-cagcgcctagcacgtaa-caAC--CTCTAACATTG--------ACGTGAAGGGCCCAGCTCACCAGCAGAGCTCCCAACACCTCAGGTACCTTCTCCATCCACTA---TCTTCAGGCTGTTCCTGCCGCACCCATCCTCAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGGCTGCCCCGATGGGCCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAACTCTGCTCCCTGGGCTGACAGCAATCCTAGGCTCC-CACCTGAC--AGGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTA---AGCCC-AGGGCTGTGCCTCATTCCTCAA-----------CGCACCTTGGGTACTCCAGTCGG--------------------ACTCTCAA-----CTGATTGGGGATGGAAACCTGAAGGACAGGAAACCCTGGCAGCAAAAAG----TACCAATGGGAC-AAAAGA---------AAAGGCCAGA-ATCTC--AGAAC------------TGCGG----------G-------------AGCAAACTTCCAGTCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
s panTro4.chr15              80111795 547 +  99548318 ttttctcaactaggggtgagctccatgacagtaatggtca--ttttgtttagctaattcccagtgcttgaa-cagcgcctagcacgtaA-CAAC--CTCTAACATTG--------ACGTGAAGGGCCCAGCTCACCAGCAGAGCTCCCAACACCTCAGGCACCTTCTCCATCCACTA---TCTTCAGGCTGTTCCTGCCACACCCATCCTCAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGGCTGCCCCGATGGGCCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAACTCTGCTCCCTGGGCTGACAGCAATCCTAGGCTCC-CACCTGAC--AGGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTA---AACCC-AGGGCTGTGCCTCATTCCTCAA-----------CGCACCTTGGGTACTCCAGTCGG--------------------ACTCTCAA-----CTGATTGGGGATGGAAACCTGAAGGACAGGAAACCCTGGCAGCAAAAAG----TAGCAATGGGAC-AAAAGA---------AAAGGCCAGA-ATCTC--AGAAC------------TGCGG----------G-------------AGCAAACTTCCAGTCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10120311 549 +  10928107 ttttctcaactaggggtgagctccatgacagcaatggtca--ttttgtttagccaattcccagtgcttgaa-cagcgcctagcacataa-caacctctcTAACATTG--------ACGTGAAGGGCCCAACTCACCAGCAGAGCTCCCAACACCTCAGGCACCTTCTCCATCCATTA---TCTTCAGGCTGTTCCTGCCATACCCATCCTGAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGGCTGCCCCGATGGGCCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAACTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCTCC-CACCTGAC--AGGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTA---AGCCC-AGGGCTGTGCCTCATTCCTCAA-----------CGCACCTTGGGTACTCCAGTCGG--------------------ACTCTCAA-----CTGATTGGGGATGGAAACCTGAAGGACAGGAAACCCTGGCAGC-AAAAG----TAGCAATGGGACAAAAAGA---------AAAGGCCAGA-ATCTC--AGAAC------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17193306 550 - 121039945 gtttctcaactaggggtgagctccatgacagtaatggtca--ttttgtttagctaattcccagtgcttgaa-cagcgcctagcacgtaAGCAACCTCTCTAACATTG--------ACATGAAGGGCCCAACTCACCAGCAGAGCTCCCAACACCTCAGGCACCTTCTCCATCCACTA---CCTTCAAGCTGTTCCTGCCATACCCATCCTCAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGGCTGCCCCGATGGGCCGCAGCCTAGGTAGGGCCCTGCTCCCTTCTTCCAACTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCTCC-CACCTGAC----GGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAGCAGCCC-AGGGCTGTGCCTCATTCCTCGA-----------CGCACCTTGGGTACTCCAGTCGG--------------------ACTCTCAA-----CTGATTGGGGATGGAAACCTGAAGGACAGAAAACCCTGGCAGC-AAAAG----TAGCAATGGGAC-AAAAGA---------AAAGGCCAGT-ATCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106674680 547 - 170124641 ttttctcaactaggggtgagctccatgacagtaatggtca--ttttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACATGAAGGGCCCAAATCACCTGCAGAACTCCCAGCACCTCAGACACCCTCTCCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCCCAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCTGATGGGCCGCAGCCTAGGTAGGGCCCTGC-CCCTTCTTCCAACTCTGCTCCCTGGGCTGACAGCGGTCCTAGGCCCC-TACCTGAT--AGGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAGCAGCCCAAGGGCTGTGCCTCATTCCTCAA-----------CGCACCTTAGGTACTCCAGTCGG--------------------ACTCTC---------GACTGGGGATGGAAACCTGAAGGGCAGGAAACCCTGGCACC-AAAAG----TGGCACTGGGAC-AAAATA---------AAAGGCCAGA-ATCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108408231 546 - 171882078 ttttctcaactaggggtgagctccatgacagtaatggtca--ttttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACATGAAGGGCCCAAATCACCTGCAGAACTCCCAGCACCTCAGGCACCCTCTCCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCCCAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCCGATGGGCCGCAGCCTAGGTAGGGCCCTGC-CCCTTCTTCCAACTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT--AGGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAGCAGCCC-AGGGCTGTGCCTCATTCCTCAA-----------CGCACCTTAGGTACTCCAGTCGG--------------------ACTCTC---------GACTGGGGATGGAAACCTGAAGGGCAGGAAACCCTGGCACC-AAAAG----TAGCACTGGGAC-AAAATA---------AAAGGCCAGA-ATCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              92645 546 +    130206 TTTTCTCAACTAGGGGTGAGCTCCATGACAGTAATGGTCA--TTTTGTTTAGCTAATTCCCACTGCTTTAA-CAGCGCCTAGCACACAG-CAACCTCTCCAATATTG--------ACATGAAGGGCCCAAATCACCTGCAGAACTCCCAGCACCTCAGGCACCCTCTCCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCCCAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCCGATGGGCCGCAGCCTAGGTAGGGCCCTGC-CCCTTCTTCCAACTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT--AGGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAGCAGCCC-AGGGCTGTGCCTCATTCCTCAA-----------CGCACCTTAGGTACTCCAGTCGG--------------------ACTCTC---------GACTGGGGATGGAAACCTGAAGGACAGGAAACCCTGGCACC-AAAAG----TAGCACTGGGAC-AAAATA---------AAAGGCCAGA-ATCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAaga
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21097364 546 -  24206276 ttttctcaactaggggtgagctccatgacagtaatggtca--ttttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACGTGAAAGGCCCAACTCACCTGCAGAACTCCCAACACCTCAGACACCTTCTCCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCCCAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCCGATGGGCCGCAGCCTAGGTAGGGTCCTGC-CCCTTCTTCCAACTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT--AGGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAGCAGCCC-AGGGCTGTGCCTCATTCCTCAA-----------CGCACCTTAGGTACTCCAGTCGG--------------------ACTCTC---------GACTGGGGATGGAAACCTAAAGGACAGGAAACCCTGGCACC-AAAAG----TAGCACTGGGAC-AAAATA---------AAAGGCCAGA-ATCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22233226 542 + 158406734 ttttctcatctagaggtgagcaccatgacagtaagggtcg--ttttgtttagccaattcccagtgcttgaa-tagcacctagcatggag-caatctctccaataTTG--------AAATGAAGGGCCCAAGTCACCTGCAGAGCTCTCAACACTTCAGGCACCTTCTCCACCCACCG---TCTTCAGGTTGTTTCTGCCATACCCATCCCCAAACCAGGGTCTTCAGAAG-CTTCCAGTGCAAGCTGCCCTGATGAGTGGCAGCCTAGGTAGGGCCCTGCCAGCTTCTTCCAACCTTGCTCCCTGGGCTGA-------CCTAGGCCCCACACCTGAC----GGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAGCAGCCC-AGGGCTGTGCCTCATTCCTCAG-----------CGCACCTTGGGTACTCCAGTCAG--------------------ACTCTCAA-----CTGATTGAGGATGG-AACCTGAAGAACAGGAAACCCTCACCCC-AAAAG----TAACACTGGGAC-AAAATA---------AAAGGCCAGA-ATCTC--AGAAT------------TGCAG----------G-------------AGCAAACTTCCATTCAAGCTGCAGTCAAGCC--TGAAGTGAAAGA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81345695 549 + 145441459 TTTTCTCAGCTAGGTTTGAGCTA---AACAGGAAGG---------------GCTAACCTCGAGTGCTTAAATCAGTGGCTGGCTCACAG-AGAGGTCTCAAACACTTTTACCAACAAATTAGGATCTCAGTTAACTAGACTGTTCCCGATTAGTAGGGACACTATCTCCAACCTTCAGCTTCTTCCGGTTGTT-CTGCCATAACCAAGCCCAAAGCAGGCTCTTACGCTA-CGACC----CAG--TGGCTTCAT------CTGTCCAGAGAGGG-------CCTTTCCTCCAGCTCT--TTCCTGG---GACAG-GGTCCTGCGCTCA-AACCTAA-------GGAGACCGTGCTGGCCACAGGGCATGTATCAAG-GGGCC-AAGGCTGTGCTTCATCCTTCAA-----------CTCATCTACGTCACTCTGGTTAGGTGAAGAGCTGAAAGTCCTTACTCTAAAAGTAGCTCATGGCGGGAGGAAAAAAGATGTCCTTG--ACCATGGACCC-GGAAG-----AATACTGAAGA-GACCAA---------AGGGTCTGTA-ATCCCTGGGGGT------------TGCATCGTACATTACC-------------AGTGAATTCCCAATGAAGTGGAGGCCAGGCT--CCAGATGCAAGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403965 562 +  91889043 TTTCTTCACCTAGGGGTGAGCTCCCCCACAGTGAGGGCCGTTTTTTGCTTTGCT-ATTCCCAGTT-----A-CCACCCCCA-CCCTCAG-CAAGTTCTCAAAGGTAG--------AAGCTGAGG--CCTGACCACCTGCAGCACTCTCAACCACTGAGGCACCTCCACCAACCACCAGGGTCCTCAGGCTCTTCCTGCTATACCCACGCCCCAACCAGGCCTTTCTGGAGCCCACTGGAGCAGACCACCCC------------------------------CTTGTCCTCCAGCTCTGCT---------GAACCAAGTCCCAAGCCCC-CACCAGACTCAAGGAAAGCCTGGGCTGGCCA-GTTGCAGGCAGTAAGTGGCAT-GGGGCTGGGCCTCACCCCTCCAGCTCCCTTCTGGTCACCTTGGCCAGTGCAGTCAG--------------------ACCTTAAA-----CTGGCTGGGGACGGAAGACCAGAGGACAGGAAGTTCTCTACCT-GAAAGTGAGTGGCACCTGGAC-GAGATGGGGTGGAGCGAAGGAGAGAGGCCTC--TGTATGGACGCCTCCCCTGAGG----------GAGCTTCCTTCACCAGCATGCTTCCCGTCAAGCTGCTGCCAGCCAGGCTGAGTGAAGGA
i canFam3.chr3              I 232 I 4

a score=40011.000000
s hg38.chr15_KI270850v1_alt    330695 29 +    430880 TCAGGgttttt---gtt--------------tttg-------------tttttgttttt
s panTro4.chr15              80112342 32 +  99548318 TCAGGGttttttctgtt--------------tttg-------------tttttgttttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10120860 23 +  10928107 TCAGG---------Ctt--------------tttt-------------ttttttttttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17193856 30 - 121039945 TCAGGCtttttt--ttt--------------tttt-------------ttttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106675227 28 - 170124641 TCAGGGtttt----ttt--------------tttt-------------ctttttttttt
i rheMac3.chr7              C 0 I 447
s macFas5.chr7              108408777 28 - 171882078 TCAGGGtttt----ttt--------------tttt-------------ttttttttttt
i macFas5.chr7              C 0 I 4
s papAnu2.JH685126              93191 28 +    130206 tcagggtttt----ttt--------------tttt-------------ttttttttttt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21097910 42 -  24206276 TCAGGGtttt----ttttgtttgtttttttgtttt-------------ttttttttttt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22233768 23 + 158406734 TCAGG---------Ctt--------------tttt-------------ttttttgtatt
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81346244 41 + 145441459 CTAGACCTTA----CAG--------------TCTTGCAGGAAGAGAACTCTTGGATTCT
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54404527  4 +  91889043 I

a score=26634.000000
s hg38.chr15_KI270850v1_alt    330724 10 +    430880 gagacggagt
s panTro4.chr15              80112374 10 +  99548318 gagacggagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10120883 10 +  10928107 gagacggagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17193886 10 - 121039945 gagacggagt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108408809 10 - 171882078 gagacgtagt
i macFas5.chr7              I 4 C 0
s papAnu2.JH685126              93219 10 +    130206 gaaacgtagT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21097952 10 -  24206276 gagacgtagt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22233791 10 + 158406734 gagacggagt
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81346285 10 + 145441459 GAGGAGTAGT
i mm10.chr7                 C 0 I 298
e canFam3.chr3               54404527  4 +  91889043 I
e rheMac3.chr7              106675255 447 - 170124641 I

a score=1054067.000000
s hg38.chr15_KI270850v1_alt    330734 519 +    430880 cttgct-gtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtgcgccaccacgccctgctaatttttatatata---tttttttttagtagagatggggttttgccattttggccaggctggtctccaacttctgacctcaggtgatccacccg-ccttgtcctcccaaagtgctgggattacaggagtgagccattgcacccggccAGCC---------------ttttttttt--tgagatagagtcttgctcagttgtccaggcttcagtgaagtgacatgg-taacagctcactgcagcctcgatttcctgggctcacatgatcctgctgcctcagtctccctagtagctggaaccacaggcacacaccaccatgcct--------------ttttttttttttggtagaaatggggtct-cccatgttgctcaggctggtctcaaacccctggggctcaagcaatcctcttgcctc
s panTro4.chr15              80112384 523 +  99548318 cttgct-gtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtgcgccaccacgcccggctaatttttgtttttggtttttttttttagtagagatggggttttgccattttggccaggctggtctccaacttctgacctcaggtgatccaccca-ccttgtcctcccaaagtgctgggattacaggagtgagccattgcacccagccAGCC---------------ttttttttt---gagatagagtcttgctcagttgcccaggcttcagtgaagtgatatgg-taacagctcactgcagcctcgatttcctgggctcacatgatcctgctacctcagtctccctagcagctggaaccacaggc------caccatgcctaa------tttttttttttttttttttgtagaaatggggtct-cctatgttgctcaggctggtctcaaacccctggggctcaagcaatcctcttgcctc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10120893 530 +  10928107 cttgct-gtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtgcgccaccacgcccggctgatttttgtatt-----tttttttttagtagagacggggtttcgccattttggccaggctggtctccaacttctgacctcaggtgatccgcgcg-ccttgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCC---------------ttttttttttttgagatagagtcttgctcagttgcccaggcttcagtgaagtgacacgg-taacagctcactgcagcctcgatttcctgggctcacatgatcctcctgcctcagtctccctagtagctggaaccacaggcacacaccaccatgcctggcttttttttttttttttttttttttgtaaaaatggggtct----atgttgctcaggctggtctcaaacccctggggctcaagcaatcctcttgcctc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17193896 523 - 121039945 cttgct-gtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaaatagctgggattacagg------------cgtgcgccaccacgcccgactaatttttgtatttttt-tttttttttagtagagacggggtttcgccattttggccaggctggtctccaacttctgacctcaggtgatccgcccg-ccttgtcttcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCC---------------ttttttttt-tttttatagagtcttgctcagttgcccaggcttcagtgaagtgacacag-taacagctcactgcagcctcgatttcctgagttcacatgatcctcctgcctcagtctccctagtagctggaaccacaggcacacaccaccatggcta-------------tttttttttttttgcagagatggggtct-cctatgttgctcaggctggtctcaaacctctggggctcaagcaatcctcttgcctc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108408819 538 - 171882078 cttcct-gtcgctcacgctggagtgcagtggcgcggtatcagctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaattagctgggattacagg------------cgtacgccaccacgcccggctaatttttgta-------tacttttttagtagagccggggtttcgccattttggctaggctggtctccaacttctgacctcaggtgatccgcccgccctcgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCCCttttttttttttttttttttttt-ttttgaaatagtcttgctcagttgcccaggcttcagtgaagtgacacggttaacagctcactgcagcctcaatttcctgggctcacatgatactcctgccccagcctccccagtagctggaactataagcacacaccaccatgcctggctaa----------tttttttttttgtagagatggggtctccctatgttgctcaggctggtctcaaacccctagggctcaagcaatcctcttgcctc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              93229 522 +    130206 CTtcct-gtcgcccacgctggagtgcagtggcgcggtatcagctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtacgccaccacgcccggctaatttttgta-------tacttttttagtagagccggggtttcgccattttggctaggctggtcttcaacttctgacctcaggtgatccgcccgccctcgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccagcc---------------ttttttttt-ttttgatatagtcttgctcagttgcccaggcttcagtgaaGTGACACGgttaacagctcactgcagcctcaatttcctgggctcacatgatcctcctgcctcagcctccccagtagctggaactacaagcacacaccgccatgcctggctaa-----------gtttttttttgtagagatggggtctccctatgttgctcaggctggtctcaaacccctagggctcaagcaatcctcttgcctc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21097962 538 -  24206276 cttgct-gtcacccacgctggagtgcagtggcgcgatatcagctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgcgccaccacgtgcgccaccacgcccggctaatttttgta-------tacttttttagtagagtcggggtttcgccattttggctaggctggtctccaacttctgacctcaggtgatccgcgcgccctcgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCC----------tttttttttttttt-ttttgagatagtcttgctcagttgcccaggcttcagtgaagtgacacggttaacagctcactgcagcctcaatttcctgggctcacatgatcctcctgcctcagcctccccagtagctggaactataagcacacaccactatgcctggctaa------------tttttttttgtagagatggtgtctccctatgttgctcaggctggtctcaaacccctagggcttaagcaatcctcttgcctc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22233801 451 + 158406734 ttcgctcgttacccaagctggagtgcaatggtgccgtctcggctcactataacctcggcctcctgagttcaagtgactctcctgcctcagcctcccaagtagctgggattatagg------------tgagcggcaccaggcctggctactttttt---------gtttgtttaagtagagacagggtttcgccatgttggccaggctggtcttcaaccctgaccctcagatgatctgccca-cct--------cAAAG---------------------------------GCCAGCC---------------------ttt-ttgagacacggtcttgctcagttgcccaggatttagtgaagtgatatgc-taatagttcactgccacctcaatttcctgtgctcacatgatcttcctgcctcagtctccccagtagctggaaatacaggcacacaccaccatgtccagctag--------------tttttttgtggagatggggtct------------------ggtctcaaacccccagggctcaagcgatcctcctgccgc
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81346295 298 + 145441459 I
e canFam3.chr3               54404527   4 +  91889043 I
e rheMac3.chr7              106675255 447 - 170124641 I

a score=36280.000000
s hg38.chr15_KI270850v1_alt    331253 11 +    430880 agcctcccaca
s panTro4.chr15              80112907 11 +  99548318 agcctcccaca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10121423 11 +  10928107 ggcctcccaca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17194419 11 - 121039945 agcctcccaca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106675702 11 - 170124641 agcctcccaca
i rheMac3.chr7              I 447 C 0
s macFas5.chr7              108409357 11 - 171882078 agcctcccaca
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              93751 11 +    130206 agcctcccaca
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21098500 11 -  24206276 agcctcccaca
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22234252 11 + 158406734 agcttcccaca
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81346295 298 + 145441459 I
e canFam3.chr3               54404527  4 +  91889043 I

a score=650182.000000
s hg38.chr15_KI270850v1_alt    331264 308 +    430880 gtgct--gattgtaagcgtgagccactgtgcccagtcTGGCCTCTCC--------------tttatttatttatttattta----gagac--agtctcactctgttgcccaggct-ggagtgcagtggcatggtcttggctcaccgcaacctccacctcccgggttcaagagattctcctgcctgagcctcttgggtagctgggattagaggtgcctgcaactaccacctggctaattttttgtattttcagtagagaaggggtttcactatgttggccaggctggtctcaaaatcctgacctcgtgatccgcccaccttggcctcccaat
s panTro4.chr15              80112918 312 +  99548318 gtgct--gattgtaagcatgagccactgtgcccagtcTGGCCTCTCC--------------tttatttatttatttatttatttagagac--agtctcactctgttgcccaggct-ggagtgcagtggcatggtcttggctcaccgcaacctccacctcccgggttcaagagattctcctgcctgagcctcttgggtagctgggattagaggtgcctgcaactaccacctggctaattttttgtattttcagtagagaaggggtttcactatgttggcaaggctggtctcaaaatcctgacctcgtgatccgcccaccttggcctcccaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10121434 326 +  10928107 gtgct--gattataagcgtgagccactgtgcccagtcTGTCCTCtttatttcttttatttatttatttatttatttatttatttagagac--agtctcactctgttgcccaggct-ggagtgcagtggcatggtcttggctcaccgcaacctccacctcccaggttcaagacattctcctgcctgagcctcccaggtagctgggattagaggtgcctgcaaccaccacccggctaattttttgtattttcagtagagaaggggtttcaccatgttggccagactggtctcaaaatcctgacctcgtgatctgcccatcttggcctcccaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17194430 322 - 121039945 gtgct--gattataagcgtgagccactgtgcccagtcTGGCCTCTCCttttttttaat---tttatttatttatttatttt----gagacggagtcccactctgtggcccaggctgggagtgcagtggcatggtcttggctcacagcaacctccacctcctgggttcaagaaattctcctgcctgagcctcccaggtagctgggattacaggtgcctgccaccaccacccggctaattttttgtattttcagtacagaaggggtttcaccatgttggccaggctggtctcaaaatcctgacttcgtgatccacccaccttggcctcccagt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106675713 302 - 170124641 gtgctgagattataagcgtgagccagtgtgcccagtcTGGCCTCCCCt-------------tttatttttt--------------gagacagagtctcactctattgcccaggct-ggagtgcagtggcatggtctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcgcctgccacca-cacccggctaattttttgtattttcaatagagacggggtttcaccatgttggccaggctggtctcaaaatcctgacctcgtgatctgcccatcttggcctcccaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108409368 302 - 171882078 gtgctgagattataagcgtgagccagtgtgcccagtcTGGCCTCCCCt-------------tttatttttt--------------gagacggagtctcactctattgcccaggct-ggagtgcagtggcatggtctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcgcctgccacca-cacccggctaattttttgtattttcaatagagacggggtttcaccatgttggccaggctggtctcaaaatcctgacctcgtgatctgcccatcttggcctcccaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              93762 294 +    130206 gtgctgagattataagcgtgagccactgtgcccagtctggcctcccct-------------tttatttttt--------------gagacggagtctcactctattgcccaggct-ggagtgcagtggcatggcctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcgcctgccacca-cacccggctaattttttgtattttcaatagagacagggtttcaccatgttggccaggctggtctcaaaatcc--------tgatctgcccatcttggcctcccaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21098511 301 -  24206276 gtgctgaga-tataagcgtgagccactgtgcccagtcTGGCCTCCCCt-------------tttatttttt--------------gagacggagtctcactctcttgctcaggct-ggagtgcagtggcatggtctggactcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcacctgccacca-cacctggctaattttttgtattttcaatagagacggggtttcaccatgttggctaggctggtctcaaaatcctgacctcgtgatctgcccatcttggcctcccaaa
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81346295 298 + 145441459 I
e calJac3.chr6               22234263   0 + 158406734 C
e canFam3.chr3               54404527   4 +  91889043 I

a score=115111.000000
s hg38.chr15_KI270850v1_alt    331572 39 +    430880 gtgctgggattacaggcgtgagccaccgcgcccggccAG
s panTro4.chr15              80113230 39 +  99548318 gtgctgggattacaggcgtgagccaccgcgcccggccAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10121760 39 +  10928107 gtgctgagattacaggtgtgagccatcgcgcccggccAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17194752 39 - 121039945 gtgctgggattacaggcgtgagccaccgcgcccggccAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106676015 39 - 170124641 gtgctgggattacaggcctgagccaccgtgcccggccAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108409670 39 - 171882078 gtgctgggattacaggcctgagccaccgtgcccggccAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              94056 39 +    130206 gtgctgggattacaggcctgagccaccgtgcccggccag
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21098812 39 -  24206276 gtgctgggattacaggcctgagccaccatgcccggccAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22234263 39 + 158406734 gtgctgagattataagcatgagccactgtgcccagTTTA
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81346295 298 + 145441459 I
e canFam3.chr3               54404527  4 +  91889043 I

a score=706253.000000
s hg38.chr15_KI270850v1_alt    331611 231 +    430880 GCCTCTCCTTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCTCTCTCAGAAGAGACAGCTTCAGTATGCAGGGTTCCCTCCACCTCAGACTAAATTGGAGGTTCCCAAAGAATCGGTCCAACAGCTGGGCCCAGGC-CAACTCGACTGaa--aaaaaaaaaaa-----aaaaTCAGCAG---ACCTTGCCAGAAATCCTGTGAG-CTCTGA--GAAAGTTCCGTTG-ATAGGGCT
s panTro4.chr15              80113269 227 +  99548318 GCCTCTCCTTTCGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCTCTCTCAGAAGAGACAGCTTCAGTATGCAGGGTTCCCTCCACCTCAGACTAAATTGGAGGTTCCCAAAGAATCGGTCCAACAGCTGGGCCCAGGC-CAACTCGACTGAA--AAAAAAAAAAA---------TCAGCAG---ACCTTGCCACAAATCCTGTGAG-CTCTGA--GAAAGTTCCGTTG-ATAGGGCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10121799 236 +  10928107 GCCTCTCCTTTCGTGAGGAGACTCCCCCACCTTGCCCAAT----GGTTCTTGCACCTCTCTCAGAAGAGACAGCTTCAGTATGCAAGGTTCCCTCCACCTCAGACTAAATTGGAGGTTCCCAAAGAATCAGTCCAACAGCTGGGCCCAGGC-CAACTCGACTGaa--aaaaaaaaaaaaaaaaaaaaTCAGCAG---ACCTTGCCACAAATCCTGTGAG-CTCTTA--GAAAGTTCAGCTG-ATAGGGCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17194791 221 - 121039945 GCATCTC-----GTGAGGAGAATCCCCCACCTTGCCCAAT----AGTTCTTGCACCTTTCTCAGAAGAGACAGCTTCAGTATGCA-GGTTCCCTCCACCTCAGACTAAATTAGAGGTTCCCAAAGAATGAGTCCAACAGCTGGGCCCAGGC------TGACTGaa--aaaaaaaaaaa----aaaaaTCAGCAG---ACCTTGCCACAAATCCTGTGAG-CTCTGA--GAAAGTTCAGTTG-ATAGGGCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106676054 234 - 170124641 GCCTCTCATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCTCTCTCACAAGAGCCAGCTTCAGTATGCCGGGTTCCCTCTACCTCAGACTAAGTTGGAGGTTCCCAAAGAATCAGTCCAACAGCTGGGCCCAGGC-CAACTCGACTGGGAAAAAAAAAAAAA----AAAAATCAGCAG---ACCCTGCCACAGATCCTGTGAG-CTCTAA--AAAAGTTCAATTG-ACAGGGCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108409709 232 - 171882078 GCCTCTCATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCTCTCTCACAAGAGCCAGCTTCAGTATGCCGGGTTCCCTCTACCTCAGACTAAGTTGGAGGTTCCCAAAGAATCAGTCCAACAGCTGGGCCCAGGC-CAACTCGACTGGG--AAAAAAAAAAA----AAAAATCAGCAG---ACCTTGCCACAGATCCTGTGAG-CTCTAA--AAAAGTTCAATTG-ACAGGGCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              94095 233 +    130206 gccTCTCATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCTCTCTCACAAGAGCCAGCTTCAGTATGCAGGGTTCCCTCTACCTCAGACTAAGTTGGAGGTTCCCAAAGAATCAGTCCAACAGCTGGGCCCAGGC-CAACTcgactggg-ggaaaaaaaaaa----aaaaatcagcag---accTTGCCACAGATCCTGTGAG-CTCTAA--AAAAGTTCAATTG-ACAGGGCT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21098851 234 -  24206276 GCCTCTCATTTTGTGAGAAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCTCTCTCACAAGAGCCAGCTTCAGTATGCAGGGTTCCCACTACCTCAGACTAAGTTGGAGGTTCCCAAAGAATCAGTCCAACAGCTGGGCCCAGGC-CAACTCGACTGGGAAAAAAATTTAAA----AAACATCAGCAG---ACCTTGCCACAGATCCTGTGAG-CTCTAA--AAAAGTTCAACTG-ACAGGGCT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22234302 225 + 158406734 GCCTCTCCTTTAGTGAGGAGACTCCTCCACCCTTCCCAAT----AGTTCTTGCACCTCTTTCAGAAGAGAGAGCTTCACTATGCAGGGTTCCCTCTACCTCAACCTAAATTGGAGTTTCCCAAAGCATCAGTCCAACAGCTGGGCCTAGGC-CAACTTGATTGAA------------A----AACAATCAGCAGTACACCCTGTCACAAATCCTAGGAG-CTTTGA--GAAAGTTCAGTTG-ATAGGGTT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54404531 224 +  91889043 GCCTCTCCTCCTGCTGAAGGACGCC-CCACCCCCTGCAACAGTGAGTTCTTGCACCTCTCACAAGGAGGGATGCTTTGATGTGCCAGGTTCCCTCTACCTCAGACTAAAATGGAA---TCCAAAGGACCAGTCCAGCAGCTGGGCCCAGGCACAACCTACCTGGA----------AAA---------TCAGCAG---ACCCCCTCACAAATCCTGGGAGCCTGTGATCAGGAGTCCAAATGAACAGGGAT
i canFam3.chr3              I 4 C 0
e mm10.chr7                  81346295 298 + 145441459 I

a score=10878279.000000
s hg38.chr15_KI270850v1_alt    331842 2739 +    430880 CTCT---GAACAGCAAAAACCCAATCACTCCCTCTCAGAAAGGAACTGCATCATCATAGGTGGGTCCAAGAGGATGAGCAGCCTCCGAAGAAGTAATAGGCCAAGACTTCCAGGAGAAGCTGAGAACAAGTGGCTTCTGCTGGCACGTGAGCAGCTGTGCCTCCAGCATTCTCTAAGCTGGGCCT---GGAGGCTGTGAGGACCCCCGAGAAGCTAAGATATGAGGAC--TTTTTATATTTGGGCTAGAAGCACCCATCCACTGGAGAAGCATCTCCAAAGTATATTTGACGATGGAAGGGACCAAGAAGTA------CTCACA---GGGCAGGTCTCCCACATGGTCCCACCATTATCCTGGGCCAGGATCTCCATCACAG-AAATCCAAGGAAACAAGCTGTGGCTGTGCCATTACCCCCTTACT-CCCTCCCGTTAGCCCCTTGCTCCCAGAC-CTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTA-GTTTTTGTGGGTTTTTTGTTT-------CTTTTTaaaaaaaaaaaaaaaaaaaaaaaggaaagaaaaaa--aaGTCAAGTTTTCAAATTCCAGTGGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGGTACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCGAAAAGCAGCCCTTTTT-------------------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAGCAGCCGCTCAAAC-ACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAAAATTTTTTTTTTCTTGGTTGCAAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTAGtttttttttt--------ttttttttttttCCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGGGTCCTTGCCCTTGGTACACCCC-CTGAAAACAAAACCTGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTTGGGAAGCCAGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGAAGTATTTGAAGCAGACCTGGGTTGGGGGAAC-AAAAAGGAGGATGCC---ATGCCTGTGTCAGCACCAGACACAGGAGCTGTTGCACGAGCTGCT-TGTTCTGTT--TGGAGAAGGG-TGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAAATGGTCCCTAGGAATGCTCTCACCCC-AACACAGAAGCCTGATTAACTATGGCAAACCCACCATCCTTGTTACAGGTCCCCTTACTTAAACATGTTGGGCTCGTAGTGTGTGCA---GAGACCATGCTAGTTTCTCTTATCCCCTCTAACCATGACAGCTGCTCTCCTATTCCCCTGCCCT--TCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCTAACGT-G-GAGAATGTATAAGGATACTGACTAAAAATTCTAATGCTAGGCAACATCCTGCTTTCTTCCCAT---------------TAAGTGAggagaggtgactgg----gtttctcag-tctagtcccatctcttggttgctgtgt----aacgtcaggcaagccactaatctctgagcaattatctgactatggagattatCTGTGAAAGATCCAGATCCATAAAAGCCTCGTAGATGAGGCTGATCAGAGAGATA-CTTGGTCTCAGGCTTTAACTAACAATTCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCAGTTTAACCATATTCA-GAGACTCCAAATCTGATCAAT-GGCATCACTGCAACAAATTTTTAAACAAAATTTAAAAAGCA-CCCACTAAGCATGGAA-GGACTGCTGCTGGTGTCCTAAGAGGTCC-----------CAAACTTCCCCTA
s panTro4.chr15              80113496 2741 +  99548318 CTCT---GAACAGCAAAAACCCAATCACTCCCTCTCAGAAAGGAACTGCATCATCATAGGTGGGTCCAAGAGGATGAGCAGCCTCCGAAGAAGTAATAGGCCAAGACTTCCAGGAGAAGCTGAGAACAAGTGGCTTCTGCTGGCATGTGAGCAGCTGTGCCTCCAGCATTCTCTAAGCTGGGCCT---GGAGGCTGTGAGGACCCCCGAGAAGCTAAGATATGAGGAC--TTTTTATATTTGGGCTAGAAGCACCCATCCACTGGAGAAGCATCTCCAAAGTATATTTGACGATGGAAGGGACCAAGAAGTA------CTCACA---GGGCAGGTCTCCCACATGGTCCCACCATTATCCTGGGCCAGGATC-CCATCACAG-AAATCCAAGGAAACAAGCTGTGGCTGTGCCATTACCCCCTTACT-CCCTCCCATTAGCCCCTTGCTCCCAGAC-CTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTA-GTTTTTGTGGGTTTTTTCTTTT----TTCTTTTTTTaaaaaaaaaaaaaaag-----ggaaagaaaaaa--aaGTCAAGTTTTCAAATTCCAGTGGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATACAAGGGAAGGGTACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCGAAAAGCAGCCCTTTTT-------------------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACCCCACCCCCCCCACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAGCAGCCGCTCAAAC-ACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAAATATTTTTTTTTCTTGGTTGCAAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTAGttcttttttt-----ctttttttttttttttCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGGGTCCTTGCCCTTGGTATACCCC-CTGAAAACAAAACCTGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTTGGGAAGCCAGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGTTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGAAGTATTTGAAGCAGACCTGGGTTGGGGGAAC-AAAAAGGAGGATGCC---ATGCCTGTGCCAGCACCAGACACAGGAGCTGTTGCACGAGCTGCT-TGTTCTGTT--TGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAGATGGTCCCTAGGAATGCTCTCACCCC-AACACAGAAGCCTGATTAACTATGGCAAACCCACCATCCTTGTTACAGGTCCCCTTACTTAAACATGTTGGGCTCGTAGTGTGTGCA---GAGACCATGCTAGTTTCTCTTAACCCCTCTAACCATGACAGCTGCTCACCTATTCCCCTGCCCT--TCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCTAACGT-G-GAGAATGTATAAAGATACTGACTAAAAATTCTAATGCTAGGCAACATCCTGCTTTCTTCCCAT---------------TAAGTGAGGAGAGGTGACTGG----GTTTCTCAG-TCTAGTCCCATCTCTTGGTTGCTGTGT----AACGTCAGGCAAGCCACTAATCTCTGAGCAATTATCTGACTATGGAGATTATCTGTGAAAGATCCAGATCCATAAAAGCCTCGCAGATGAGGCTGATCAGAGAGATA-CTTGGTCTCAGGCTTTAGCTAACAATTCAAACTTAACTTCAAACTCTCACTTCAGAGCCTCAGTTTAACCATATTCA-GAGACTCCAAATCTGATCAAT-GGCATCACTGCAACaaatttttaaataaaatttaaaaaGCA-CCCACTAAGCATGGAA-GGACTGCTGCTGGTGTCCTAAGAGGTCC-----------CAAACTTCCCCTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10122035 2743 +  10928107 CTCT---GAACAGCAAAAACCAAATCACTCCCTCTCAGAAAGGAACTGCGTCATCATAGGTGGGTCCAAGAGGATGAGCAGCCTCCGAAG----AATAGGCCAAGACTTCCAGGAGAAGCTGAGAACAAGTGGCTTCTGCTAGCACGTGAGcagctgtgcctccagcattctccaagctgggctt---ggaggctgtgaggacccctgagaagctaagatatgaggac--tTTTTATATTTGGGCTAGAAGCACCCACCCACTGGAGAGGCATCTCCCAAGTATATTTGACGATGGAAGGGACCAAGAAGTA------CTCTCA---GGGCAGGTCTCCCACATGGTCCCACCATTATCCTGGGCCAGGATC-CCATCACAG-AAATCCAAGGAAACAAGCTGTGGCTGTGCCATTACCCCCTTACT-CCCCCCCGTTAGCCCCTTGCTCCCAGAC-CTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTA-GTTTTTGTGGGTTTTTTTTGT-----TTCttttttaaaaaaaaaaaaaaaa------GGAAAGAAAGAAATAAGTCAAGTTTTCAAATTCCAGTGGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAAGTAAAGATTTAAGGGAAGGGTACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCGAAAAGCAGCCCTTTTT-------------------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAGCAGCCGCTCAAACAACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAAATATTTTTTTTTCTTGGTTGCAAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTAGttttttttctttttttttttttttttttttttCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGATAAGCCAGAGGGTCCTTGCCCTTGCTATATCCC-CTAAAAACAAAACCCGACGAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCCAGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGAAGTATTTGAAGCAGACCTGGGTTGGGGGAAC-AAAAAGGAGGATGCC---ATGCCTGTGTCAGCACCAGACACAGGAGCTGTTGCATGAGCTGCT-TGTTCTGTT--TGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAGATGGTCCCTAGGAGCGCTCTCACCCC-AACACAGAAGCCTGATTAACTATGGCAAACCCACCGTCCTTGTTACAGGTCCCCTTACTTAAACATGCTGGGCTCGTAGTGTGTGCA---GAGACCATGCTAGTTTCTCTTATCCCCTCTAACCATGACAGCTGCTCTCCTATTCCCTTGCCCT--TCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCTAACGT-G-GAGAATGTATAAAGATACTGACTAAAAATTCTAATGCTAGGCAGCATCCTGCTTTCTTCCCAT---------------TAagt---gagaggtgactgggtttgtttctcag-tctactcccatctcttggttgctgtgt----gacctcaggcaagccactaatctctgagcaattatctgactatggagattatctgtgaAAGATCCAGATCCATAAAAGCCTGGTAGATAAGGCTGATCAGAAAGATA-CTTGGTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCAGTTTAACCATATTCA-GAGACTCCAAATCTGATCAAT-GGCATCACTGCaaaaaatttttaaataaaatttaaaaaGCA-CCCACTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTCC-----------CAAACTTCCCCTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17195012 2753 - 121039945 CTCT---CAACAGCAAAAACCAAATCACTCCCTCTCAGAAAGGAACTGGGTCATTATAGGTGGGTCCAAGAGGATGAACAGCCTCCGAAGAAGTAACAGGCCAAGGCTTCCAGGAGAAGCTGAGAACAAGTGGCTTCTGCTGGCACGTGAGCAGCTGTGCCTCCAGCATTCTCCAAGCTGAGCCT---GGAGGCTGTGAGGACCCCTGAGAAGCTAAGATATGAGGAC--TTTTTATATTTGGGCTAGAAGTACCCACCCACTGGAGAGGCATCTCCAAAGTATATTTGATGATGGAAGGGACCAAGAAGTA------CTCACA---GGGCAGGTCTCCCACACAGTCCCACCATTATCCTGGGCCAGGATC-CCATCACAG-AAATTCAAGGAAACAAGCTGTGGCTGTGCCATTACCCCCTTACT-CCC-CATGTTAGCCCCTTGCTCCCAGAC-CTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTA-GTTTTTGTGGGttttttttttttgtattttttttaaaaaaaaaaaaaaaaaa-----ggaaagaaagaaaaaaGTCAAGTTTTCAAATTCCAGTGGCATTTCCGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGGTACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCCTTTTT-------------------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACCCCACCCCCCCCACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAGCAGCTGCTCAAAC-ACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAAACATTTTTTTTTCTTGGTTGCAAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCACCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTAGttttttttttttttttttttttttttttttttCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGGGTCCTTGCCCTTGGTATACCCC-C-GAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AACTTTCCCTTGTCCTCGGGAAGCCAGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAAGCTGCTTGCCTGACCTGCCAGCTTCGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGAAGTATTTGAAGCAGACCTGGGTTGGGGGAAC-AAAAAGGAGGATGCC---ATGCTTGTGTCAGCACCAGACACAGAAGCTGTTGCATGAGCTGCT-TGTTCTGTT--TGAAGAAGGGGTGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAGATGGTCCATAGGAGCGCTCTCACCTC-AACACAGAAGCCTGATTAACTATGGCAAACCCACCATCCTCGTTACGGGTCCCCTTACTTAAACATGTTGGGCTCATAGTGTGTGCA---GAGACCATGCTAGTTTCTCTTA-CCCCTCTAACCATGACAGCTGCTCTCCTATTCCCCTGCCCT--TCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCTAACGT-G-GAGAATGTATAAAGACACTGACTAAAAATTCTAATGCTAGGCAACATCCTGCTTTCTTCCCAT---------------TAAGTGAGGAGAGGTGActgggtttgtttctcag-tttagtcccatctcttggctgctgtgt----aacctcaagcaagccactaatctctgagcaattatctgactatggagattatCTGTGAAAGATCCAGATCCATAAAAGCCTGGTAGATGAGGCTGATCAGAGAGGTA-TTTGGTCTCAGGCTTTAGCTAACGATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCAGTTTAACCATATTCA-GAGACTCCAAATCTGATCAAC-GGCATCACTGCAAAAAATTTTTAAATAAAATTTAAAAAGCA-CCCACTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTCC-----------CAGACTTCCCCTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106676288 2719 - 170124641 CTCT---GAACAGCAAAAACCAAATCATTCCCTCTCAGAAAGGAACTCAGTCATCATAGGTGGGTCCAAGAGGATGAGCAGCCTCTGAAGAAGTAATAAGCCAAGAATTGCAGGAGAAGCTGAGAACAAGTGGCTTCTGCTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCTGGGCCT---GGAGGCTGTGAGGACCCCTGAGAAGCTAAGATATGAGGAC--TTTTTATATTTGGGCTAGAAGCACCCACCCACTGGAGAGGCATCTCCAAAATGTATTTGATGATAGAAAGGACCAAGAAGTA------CTCACA---GGGCAGGTCTCCCACATGGTCCCACTATTATCCTGGGCCGGGATC-CCATCACAG-AAATCCAAGGAAACAAGCTACGGCTGCGCCATTACTCCCTTACT-CCC---CATTAGACCCCTGCTCCCAGAC-CTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTA-GTTTTTGTG----TTTTCTTT-----TTC--------------AAAAAAAAA-----GGAAAGAAAA----AAGTCAAGTTTTCAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATAT-----AAGGGTACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCCTTTTT-------------------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAGCAGCCGCTCAAAC-ACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAAACATTTTTTTTTCTTGGTTGCAAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTGTTTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCTGGACAC-GTAG---ttttttt----ttttttttttttttttCCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCCAGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGAAGTATTTGAAGCAGACCTGGGTTGAGGGAAC-AAAAAGGAGGATGCCATAATGCCTGTGTCAGCACCAGACAAAGGAGCTGTTGCATGAGCTGCT-TGTTCTGTT--TGGAGAAGGGGTGGGAGACTCCCCGATGGCCTCTAT--GGATTAG-AAGAGATGGTCCCTAGAAGCGCTCTCACCCC-AACACAGAAGCCTGATTAACTATGGCAAACCCGCCATCCTTGTTACAGGTCCCCTTACTTAAACATGTCGGGCTCCTAGTGTGTACA---GAGACCATGCTAGTTTCTCTTATCTCCTCTAACCATGACAGCCGCTGTCCTGTTCCCCTGCCCT--TCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCTAACAT-G-GAGAATGTATAAAGACACTGACAACAAATTCTAATGCTAGGCAACATCCTGCTTTCTTCCCAT---------------TAAGTGAGGAGAGGTGACTGGGTTTGTTTCTCAG-tctagtcccatctctgggttgctgtgt----aatctcaggcaagccactAATGTCTGAGCAGTTATCTGACTATGGAGATTATCTGTGAAAGATCCAGATCCATAAAAGCCTGGTAGATGAGCCTGATCAGAGAGATA-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCGGTTTAACCATATACAGGAGACTCCAAATCTGAGCAAT-GGCATTACTGCaaaaaaattttaaataaaatttaaaaaGCA-CCCACTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC-----------CAAACTTCCCCTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108409941 2720 - 171882078 CTCT---GAACAGCAAAAACCAAATCATTCCCTCTCAGAAAGGAACTCAGTCATCATAGGTGGGTCCAAGAGGATGAGCAGCCTCTGAAGAAGTAATAAGCCAAGAATTGCAGGAGAAGCTGAGAACAAGTGGCTTCTGCTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCTGGGCCT---GGAGGCTGTGAGGACCCCTGAGAAGCTAAGATGTGAGGAC--TTTTTATATTTGGGCTAGAAGCACCCACCCACTGGAGAGGCATCTCCAAAATGTATTTGATGATAGAAAGGACCAAGAAGTA------CTCACA---GGGCAGGTCTCCCACATGGTCCCACTATTATCCTGGGCCGGGATC-CCATCACAG-AAATCCAAGGAAACAAGCTACGGCTGCGCCATTACTCCCTTACT-CCC---CATTAGACCCCTGCTCCCAGAC-CTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTA-GTTTTTGTG----TTTTCTTT-----TTC--------------AAAAAAAAA-----GGAAAGAAAA----AAGTCAAGTTTTCAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGGTACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCCTTTTT-------------------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAGCAGCCGCTCAAAC-ACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAAACTTTTTTTTTTCTTGGTTGCAAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTGTTTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCCGGACCC-GTA------tttct----ttttttttttttttttCCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCCAGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGAAGTATTTGAAGCAGACCTGGGTTGAGGGAAC-AAAAAGGAGGATGCCATAATGCCTGTGTCAGCACCAGACAAAGGAGCTGTTGCATGAGCTGCT-TGTTCGGTT--TGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGGTGCCTAGAAGCGCTCTCACCCC-AACACAGAAGCCTGATTAACTATGGCAAACCCGCCATCCTTGTTACAGGTCCCCTTACTTAAACATGTCGGGCTCCTAGTGTGTACA---GAGACCATGCTAGTTTCTCTTATCTCCTCTAACCATGACAGCCGCTGTCCTGTTCCCCTGCCCT--TCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCTAACAT-G-GAGAATGTATAAAGACACTGACAACAAATTCTAATGCTAGGCAACATCCTGCTTTCTTCCCAT---------------TAAGTGAGGAGAGGTGACTGGGTTTGTTTCTCAG-tctagtcccatctctgggttgctgtgt----aacctcaggaaagccactAATGTCTGAGCAGTTATCTGACTATGGAGATTATCTGTGAAAGATCCAGATCCATAAAAGCCTGATAGATGAGCCTGATCAGAGAGATA-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCGGTTTAACCATATACAGGAGACTCCAAATCTGAGCAAT-GGCATTACTGTAAAAAAATTTTAAATAAAATTTAAAAAGCA-CCCACTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC-----------CAAACTTCCCCTA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              94328 2723 +    130206 CTCT---GAACAGCAAAAACCAAATCATTCCCTCTCAGAAAGGAACTCGGTCATCATAGGTGGGTCCAAGAGGATGAGCAGCCTCTGAAGAAGTAATAAGCCAAGAATTGCAGGAGAAGCTGAGAACAAGTGGCTTCTGCTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCTGGGCCT---GGAGGCTGTGAGGACCCCTGAGAAGCTAAGATGTGAGGAC--TTTTTATATTTGGGCTAGAAGCACCCACCCACTGGAGAGGCATCTCCAAAATGTATTTGATGGTAGAAAGGACCAAGAAGTA------CTCACA---GGGCAGGTCTCCCACATGGTCCCACTATTATCCTGGGCCGGGATC-CCATCACGG-AAATCCAAGGAAACAAGCTACGGCTGCGCCATTACTCCCTTACTCCCC---CATTAGCCCCCTGCTCCCAGAC-CTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCaaaaaaaCTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACccacagagtagctgggatatgCAACAATGCAACATCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAagta-gtttttgtg----ttttcttt-----ttc-------------aaaaaaaaaa-----ggaaagaaaa----aagtcaagttTTCAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGGTACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCCTTTTT-------------------AGCTcagttacaaaagaaaaaagtcctgTGACTTTGTGATTAAAAACTTCTATCAACCCCAccccccc-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAGCAGCCGCTCAAAC-ACCGTTTATCCGGTCCagtttcaaataaaacaaaaacatttttttttcttggttgcaAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCtgccaggaaag-----aaaaaatatcttgtTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGcgtaaaatatgaaatatgatttTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGggttaaataaatggaaaggcacTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCTGGACac-gtagttcttttttt----ttttttttttttttttccccgcttttcatctgcaaaatgaggaacTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCCAGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGAAGTATTTGAAGCAGACCTGGGTTGAGGGAAC-AAAAAGGAGGATGCCATAATGCCTGTGTCAGCACCAGACAAAGGAGCTGTTGCATGAGCTGCT-TGTTCTGTT--TGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGGTCCCTAGAAGCGCTCTCACCCC-AACACAGAAGCCTGATTAACTATGGCAAACCCGCCATCCTTGTTACAGGTCCCCTTACTTAAACACGTTGGGCTCCTAGTGTGTACA---GAGACCATGCTAGTTTCTCTTATCTCCTCTAACCATGACAGCTGCTGTCCTGTTCCCCTGCCCT--TCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCTAACAT-G-GAGAATGTATAAAGACACTGACAACAAATTCTAATGCTAGGCAACATCCTGCTTTCTTCCCAT---------------TAAGTGAGGAGAGGTGACTGGGTTTGTTTCTCAG-TCTAGTCCCATCTCTGGGTTGCTGTGT----AACCTCAGGCAAGCCACTAATCTCTGAGCAATTAT----CTATGGAGATTATCTGTGAAAGATCCAGATCCATAAAAGCCTGGTAGATGAGCCTGATCAGAGAGATG-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCGGTTTAACCATATACAGGAGACTCCAAATCTGAGCAAT-GGCATTactgcaaaaaaattttaaataaaatttaaaaagca-cccACTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC-----------CAAACTTCCCCTA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21099085 2722 -  24206276 CTCT---GAACAGCAAAAACCAAATCATTCCCTCTCAGAAAGGAACTGGGTCATCATAGGTGGGTCCAAGAGGATGAGCAGCCTCTGAAGAAGTGGTAAGCCAAGAATTGCAGGAGAAGCTGAGAACAAGTGGCTTCTGCTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCTGGGCCT---GGAGGCTGTGAGGACCCCTGAGAAGCTAAGATGTGAGGAC--TTTTTATATTTGGGCTAGAAGCACCCACCCACTGGAGAGGCATCTCCAAAATGTATTTGATGATAGAAAGGACCAAGAAGTA------CTCACA---GGGCAGGTCTCCCACATGGTCCCACTATTATCCTGGGCCGGGATC-CCATCACAG-AAATCCAAGGAAACAAGCTACGGCTGCACCATTACTCCCTTACT-CCC---CATTAGCCCCCTGCTCCCAGAC-CTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTA-GTTTTTGTG----TTTTCTTT-----TTC------------AAAAAAAAAAA-----GGAAAGAAAA----AAGTCAAGTTTTCAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGGTACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCCTTTTT-------------------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAGCAGCCGCTCAAAC-ACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAAACATTTTTTTTTCTTGGTTGCAAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCTGGACAC-GTAG-----ttctt----ttttttttttttttttttCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCCAGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGAAGTATTTGAAGCAGACCTGGGTTGAGGGAAC-AAAAAGGAGGATGCCATAATGCCTGTGCCAGCACCAGACAAAGGAGCTGTTGCATGAGCTGCT-TGTTCTGTT--TGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGCTCCCTAGAAGCGCTCTCACCCC-AACACAGAAGCCTGATTAACTATGGCAAACCTGCCATCCTTGTTACAGGTCCCCTTACTTAAACACGTCAGGCTCCAAGTATGTACA---GAGACCATGCTAGTTTCTCTTATCTCCTCTAACCATGACAGCTGCTGTCCTGTTCCCCTGCCCT--TCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCTAACAT-G-GAGAATGTATAAAGACACTGACTACAAATTCTAATGCTAGGCAACATCATGCTTTCTTCCCAT---------------TAAGTGAGGAGAGGTGACTGGGTTTGTTTCTCAG-tctagtcccatctctgggttgctgtgt----aacctcaggcaagccactaatctctgagcAATTATCTGACTATGGAGATTATCTGTGAAAGATCCAGATCCATAAAAGCCTGGTAGATGAGCCTGATCAGAGAGATA-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAATTTCAAACTCTCACTTGAGAGCCTCGGTTTAACCATATACAGGAGACTCCAAATCTGAGCAAT-GGCATTACTGCAAAAAAATTTTAAATAAAATTTAAAAAGCA-CCCACTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC-----------CAAACTTCCCCTA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22234527 2715 + 158406734 CTCT---GAACTGCAAAATCCCAATCACTTCCTCTCAGAAAGGAACTGGGTGATCATAGGTGGGTAGAAGAGGATGTGCAGCCTCCCAAGAAGAAATAGGCCAAGGCTTGCAGGAGAAGCTGTGAACAAGTGGCTTCTACTGGCACGTGAGCAGCTGCGCCTCCCGCATTCTCCAAGCTGGGTCT---GGAGGCTGCAAGGACCCCGGAGAAGCTAAGATGTGAGGAC--TTTTTGTATTTGGGCTAGAAGCACCCACCCACTGGAAAGGCATCTCCAACGTATAATTGACCATGGAAGGGACCA--AAGTA------CTCACA---AGGCAGGTCTCCCACATGGTCACACTACTATCCTGGTCCAGGATC-CCATCAGAGAAAATCCAAGGAAACAAGCTGTGGCTGCACGATTACCCTCTTATT-CCC----GACAGCCCCTTGCTCCCAGAC-CTCAA--ACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTA-GTTTTTGTT----TTTTCTAT-----TTT-------Taaaaaaaaaaaaaaa-----ggaaagaaagaaaaaaGTCAAGTTTTCAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACGTTCCTCAAATTAAAGATATAAAGGAAGGGTACTTG-CCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCAAAAAGCAGCCCTTTTT-------------------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACC---CCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAACTATATACAACAGCCGCTCAAAC-ACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAAAA---TTTTTTTCTTGGTTGCAAATGCCTTGATTTGCAACTATCAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG----AAAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTTGTTTACAGTAAAAAACACCAGCTGAACACTCCGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTG--------TCAGCACTTTCTGGACAC-GTGG-----TTTTT--------TTTTGTTTGTTTGTTTGCTTTTCATCGGCAGAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGAAGGGTAAGCCAGAGGGTCCTTGCCCTTGGCACGCCCC-CTGAAAACAAAACCGGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCCAGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGG-CAGCTCCTCTAGCTGGAATCTCTGTTCTTCTGGTTCCGCATCAGGGGGCTGTGATGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAAAAGTACTTGAAGCAGACCTGGGATGGGAGAACAAAAAAAGGAGATACC---ATGTCTGTGTCAGCACCGGACACAGGAGCTGTTGCATGAGCTGCT-TGCTGTGTT--TGGAGAAGGGGTGAGAAACT-CCTGATGGCCTCTGT--GGGTTAGAAAGAAATGGACCCTAGGAGCACTCTCACCCC-AACACAAAAGCCTGATTAACTATG------TAACCATCCTGCTTACAGGTCCC----CTTAAACATGTTGGGCTCCCAGTATGTACA---GGGACCATGCTAGTTTCTCTTATTCCTTCTAACCATGACAGCTGCTCTCCTATTCCCCTGCCCT--TCTCACCTCCTACAGAA----TAGTTGTATCACGTGGCTGCTAACAT-G-GAGAATGTATAAAGACACTGACTACAAATTCTAATTCTAGGCAACATGCTGCCTTCTTCCCATCTCCCTTCTTCCCACTAAATGAggagaggtgactgg----gtttctcag-tctagtcccatctcttgcttgttgtgt----aacctcaggcaagccactaatctctgagcAAACATCTGACTATGAAGATTATCTGTGAAAGATCCAGATCCATAAAAGCCTGCTAGAAGAGGCTGATCAG--AGATA-CTTGTTCTCAGGCTTTACCTAACAATCCAAACTTAATTTCAAACTGTCACTTGAGAGCCTCAGTTTAACCATGTACA-GAGACTCCAAATCTGAACAAT-GGTATAATGGCAACaatttttaaaataaaatttaaaaaGCACCCCACTAAGCATGGATGGGACTA--GGTGGTATCCTAAGATACCCTTACCCTAAGACAAACTTCTCCTA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81346593 2437 + 145441459 ccct---gaatcaaaaaagcaaaaTAGTAACCACTCAGAAAGGAATTACATCAGCACAAGTGTGTCCAAGAGG--------------AAGGAGGAACACGTCAGGGCTCACAGGA-AAGCAGCCAGCAAATGGCTC---CTGACATCTTGGGAGTTGTGCCTCTAGCATTCCTAGGGCTCCATGTGGAGGAGGCCTTGAGGGGCC--AAGAAG-TAAAATGTACAGGCAGGCCTCCTATTCTGATTGTAATCACCCAGGTACTAGACA-----CTCCAGAGTGGCT--------------GACCAGGATGTAACAAGTCCCATATAGGAGCAGGTCT-CCGCATGTACCTCCCATCCCTCTGGGCTGGTATC-CCATTAGTGAAAATCCATGAAAAGAGGACTGGTCTCTGGAAT--CTTCCCTGCT-TGC---TACCACACCCCACCACACACACACCCAGATACAGAGACAAAACTACAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAATTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACAACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAGGA--GGGAGGGGTTATGACACTGGCTCTTTGGCACACAGCTTCCCTAAGAGAGGCAAGTA-ATC-----------------------GTT--------------AAATTAAAA-----AGAA----------AAGTCAAGTTTTC-AATTCCAGTAGCGTCTTTGTCAACTGTAACTGTTGATTCATACATTCGTCAAATAAAAGTTGTAAGG-AAGGGTATTTG-CCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCACCTGCCCCCACCAAAAAGCAGCCCttttttttttttttttaatttttaaGCTCAGTTACAAAAG-AAAAAGTCCTGTGAC--TGTGATTAAAAACTTCTATCAACCC--TCCCCCA-ACATAAGTGCAACATA---AGGTGCCACAAACCATTTAAAACTATATACAGCAGCTGCTCAG---ACTTTTCCTCCGGTCCAGTTTTAAATAAAATAA-------TTTTTCTCTTGGTTACAAATGCTTTGATTTGCAACT----------GTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAAGAAAG--AAAAAAAAATATATTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCAGTAAAAACCCTCGAGCGTAAACTATGAAATATGA-TTTGGTTTAAATGAAGAGCAAAGTCTCCTTTGTTTGTTACAGTAAAAAACACCAGCTGAACACTCAATTGATGCCGTTCAGGTGGGGGTTAAATCAATGGAAAGGCACTGTATGGCAACTGC-AGAATGAACGAACCAATGAGACCTGCGCATCACCACCATCAGTATTGCAAGGAATGT-AAAAAGCGC-TTTAATAAATAAACCCAAGTGTAGGCATCTGTGTCAG---------ACCTTCTGGACACAGTGGTTGTTGTTGT------------------------TATTTTCATTTGCAAAATGAGGAACTAGAATCTGGGAAAACTAC--AATTGCTTG-AGGGTGAGCC-GAGGGTCCTTGCTC-TGGCACACCCCACTGAAAACAAGACCTGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGAGTTAGCAAGTACAAAGGTGACTAC-GATTCTCCCTTGTCTGCGCAAAGCTAGCTCCCATGGCGCCTGT-GCAGCGAGTTGC--------TGCCTGACTTGACAGCCTTTGGCACCACAGGACACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCAGTTCTTCTGGTTCCTCATTAGGGGGCTATGGTGGCGTAGGCCTTCCATGCTGTGTCGCCAGTGCCAGCAGCTTCTGCAAAAGTACTTGAAGCAGACCTAGGTTAGGGG-AC-AGAAAGAG--------------CTGTGTTAACTCTAGATATAAAG--------------------GTTCCGCT--TTAAGAGGAAAT--TAAACC-CC---TGGCTTCTGTGGGGGCTAG-AAGAGAGACTTCCTGCTAGCTTTCTCATCCC-AACAGAG----------------------------------------------CTTCTGCAAACAGTTTAGGCTTCTGGTATG-ACATGTGAGACCTTG-TAGCTT--------------------------------CCCAATTTTCTTCCCT--TCT---CTTCTACACAGCCATTCATTCCGTCTCAAGACTGCCAACAT-GAGAGAATGC-TAAAGA-ACTGGTTACAGATTCAAGTATTAAGAGAAATGCCTTCCTTTTCTCAG---------------T-------GAGAAGTGACTGG--------------------------TTTTGCTAGCTGGGTAACCAACCCCAAGCAAGTCA-TAACCTCCTAACAAGAATATGACATTGAGGAGTCACTGTGAAAGTTACTAATCCATAGAAG-CTGGT------------TTAGAAAGATA--TTGTTTTCACGCTTTATCTTACTATCCAAACTTATTGTAAG---CTCACGTGGGAGCTTCTGTTTGACTTTATTTA-TAGGCTCC--ATACAAATACC-AGCATCACTGTAAGT---------------------------CAAACTAAGCATGGAT-GGATT---GCTGGAGTCTGGAAGGCTCC-----------CAAACATCTCATA
i mm10.chr7                 I 298 I 706
s canFam3.chr3               54404755 2530 +  91889043 CTCCAAAGAACAGTAGAAAGTAAGTTTCTCCCTCTCAG-AAGGAACTGGGTCAGCATAGG----------------GTCAGCCTCCCCAGAAAT--TAGCCTGAGGCCTCAAGGAGCAGCTGAGAACCAGTGGCCC------------GAGGAGCTGTGCCTCTGGT-TTCTCCAAGCTGCGTCT---GG-GACTTTGAGAA--------------------GAGGGC--TCTTTATGCTTGGACTAAAGGTACCCA-------------CAACTCCAAGGTGCATCTGAGCACCGAAGTGAGCAAGTAATA------C---AG---GGGCAGATCTCCC-CACGGCCCCACCGCCAACCTGGGCTGGAATC-CCATCACAGAGAATCAAAGGAAACA---CAAATTTTTGCTCTTATCACCCTACT-TGC---------CCCTTGGCTCCCACAC-CTCAGACACAGAGACAGAATGAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAACTACACCACAGCGTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAGGAGGGGGGGGGGTTATGACACTGGTTCTTTGGCACACAGCTTCCCAAAGAGGGGCAAGTAGGTTTTTGTT----TTTTTTTT-----TTT--------------AAAAAAAGA-----AGAAAGAAA-----AAGTCAAGTTTTCAAATTCCAGTAGCATTTCAGT-GACTGCAACTGTTGCTTCATACACTTCTCAAATCAAAGAAAGAAGGGAAGGGTACTTGTCCCCTCTGAGAGAAAGGGCTCCTGTGAGCCTTCACCTGCCCCCACCAAAAAGCAGCCCTTTTTTTTTTTTTT----------AGCTCAGTTACAAAAGAAAAAAGTCCTGTGACTTTGTGATTAAAAACTTCTATCAACCCT-CCCCCCC-ACATAAGTGCAACTTAAGAAGGTGCAATAAACCATTTAGAACTATATACAGCAGCCGCTCAAAT-ACCGTTTATCCGGTCGAGTTTCGAATCCAAAAAAAA--TTTATTATTCTTGGTTGCAAATGCCTTGATTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAGAAAAAAAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTTGTTTACAGTAAAAAACACCAGCTGAACACTCAGTTTATGCCGTTCAGGTGGGGGTTAAATCAATGGAAAGGCACTGTATGGCAACTGCAAGAATGA---AACC---GAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGTAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATC-GTG--------TCAATACCTTCTGGACAC-GTAGTTCTTTTTTT-----------------------TGCTTTTCATCGGCAAAATGAAGAACTAAAATCTGGGACAACTACAGAGTCGCGTGGAGGGTGAGCCAGAGGGTCCTTGCCC--AGCACACCCC-CTGAAAACAAAACCCGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTACGGATTTTCCCTTGTCCTTGGGAAGCCAGCTCCCTGGTCGCCAGGGGCAGGATGCTGCAGGCTGC-TGCCTGACCTGCCAGCCTTGGGCGCCA------------------CAGCTCCTCTAACTGGCATCGCGGCTCTTCTGGTTCCGCATCAGGGGTCTGTGGTGGCGCAAGCCCTCCATGCTGTGCCGCCAGTGCCAGCAACTCCGGCAGAAGTATTTGAAGCACACCT-GGTTGGGGGAGA-AGGAGGAGAGAAGCC---ATGTCTGAGTCAGCACCAGCTGTGGGGGTGG--GGATGGGGGGATGCACCCTGCTGCCTGACAGGGAGCAGG-GATT-CCTGAGAGCCTCACA--CAGTTAG-AAG--------TCTTGGCGAAC-CTCACCCCAAACACAGAGGCCTGACCAACCATGGCAAACCCACTA--------AATGCTCAactcaaccaaacatactgggttcctactgtgtaca-----gactgtgctagCTCCCCTCACGCTCTCCTACCACCAGGGCTGCC------TTCAGGTGCCCTGATCTCACCTCCTACAGAG----CAGCTGTATCATATG-CTGCTAATTTAG-GAGAACATTCAAAGATAGCAGCTCCATGTCCTAATGCTAGGCAACATGCTGTCCTCTTCACAC---------------TAAGTGAGGAGAGGCAACAGGGTACACACCACagccctggtcccacctctggctagccgtgt----aacttcagccaacccaccaacctttgaaccatgacttgaacatgggggtcatctgtgaatgatagggataCACACAAGTCTGCTAGAAGAGGCTCATTAGAGAGATAACTTGTTCTGGGTGTTAACCCAGCAACCCAAATGTA-CCTAACACTCTCGCTTTGGAGCCTC----TGACC--------------------CTGAGCAATAAGCACCAGTGCAA---------------------AAAAGCC-------AAGCATGGTT-G----ACTGCTAGTGTCTGAATAGGCCT-----------CAAACTTCCCA--
i canFam3.chr3              C 0 C 0

a score=1034162.000000
s hg38.chr15_KI270850v1_alt    334581 301 +    430880 ACACCTGtcaaaggatgatact-gactagcagcattgacaccacttggatacttgttggacacatggaatctcagggtccgccccaaacccactgaatcagaatct----------aagatcctcaggtgatgtgtctgtaattaaggtttgagaagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCGCTGACACCTGTGGGTACAGCCCAGATGCAAA---TATCAAAGTCGTCCAGAAGTTCAGATGTAAAGGAGGACGAGGC
s panTro4.chr15              80116237 301 +  99548318 ACACCTGtcaaaggatgatact-gactagcagcattgacaccacttggatacttgttggacacatggaatctcagggtccgccccaaacccactgaatcagaatct----------aagatcctcaggtgatgtgtctgtaattaaggtttgagaagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCGCTGACACCTGTGGGTACAGCCCAGATGCAAA---TATCAAAGTCATCCAGAAGTTCAGATGTAAAGGAGGACGAGGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10124778 301 +  10928107 ACACCTGtcaaaggatgatgct-gactagcagcactgacaccacttggatacttgttggacacatggaatctcagggtccgccccaaacccactgaatcagaatct----------aagatcctcaggtgatgtgtctgtaattaaggtttgagaagcactg-CCAAACACATCCAGATCCACTTTCCATCACCCAGGAACAGTCACTAGAAAGCCACCTCGCTGCTTTCTGCCTGTCGCTGACACCTGTGGGTACAGCCCAGATGCAAA---TATCAAAGTCGTCCAGAAGTTCAGATGTAAAGGAGGACGAGGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17197765 301 - 121039945 ATACCTGtcaaaggatgatgct-gactagcaacactgacaccacttggatgcttgttggacacacggaatctcagggtccgccccaaacccactgaatcagaatct----------aagatcctcaggtgatgtgtctgtaattaagatttgagaagcactg-CCAAACACATCCAGATCCACGTTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGACACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTCAGATGTAAAGGAGGACGAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106679007 301 - 170124641 ACACCTGtcaaaggatgatgct-gactagcagcactgacaccacttggatacttgttggaaacatggaatctcagggtccatcccaaacccatcgaatcagaatct----------aagatcctcaggtgatatgtctgtaattaaggtttgagaagcactg-CCAAACGCATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGACACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTCAGATGCAAAGGAGGAGGAAGC
i rheMac3.chr7              C 0 I 13
s macFas5.chr7              108412661 301 - 171882078 ACACCTGtcaaaggatgatgct-gactagcagcactgacaccacttggatacttgttggaaacatggaatctcagggtccatcccaaacccatcgaatcagaatct----------aagatcctcaggtgatgtgtctgtaattaaggtttgagaagcactg-CCAAACGCATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCCGTCACTGACACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTCAGATGCAAAGGAGGAGGAAGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              97051 301 +    130206 ACACCTGTCAAAGGATGATGCT-GACTAGCAGCACTGACACCACTTGGATACTTGTTGGAAACATGGAATCTCAGGGTCCGTCCCAAACCCACCGAATCAGAATCT----------AAGATCCTCAGGTGATGTGTCTGTAATTaaggtttgagaagcactg-ccaAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGACACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTCAGATGCAAAGGAGGAGGAAGC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21101807 301 -  24206276 ACACCTGtcaaaggatgatgct-gactagcaccactgacaccacttggatacttgttggaaacacggaatctcagggtccgtcccaaacccaccgaatcagaatct----------aagatcctcaggtgatgtgtctgtaattaagggttgagcagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGACACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTTGTCCAGAAGTTCAGATGCAAAGGAGGAGGAAGC
i chlSab2.chr29             C 0 I 13
s calJac3.chr6               22237242 308 + 158406734 ACACCTGtcaaaggatgatgct-gactagcagcactaacaccacttggatagttgttggaaacatggaatctcaggatcaacccgaaacccaccaaatcagaatatgcatttaaacaagatcctcaggtgatatatctgcaattaaggtttgagaagcactg-CCAAACACATCCAGATCCATGCTCCACTACCCAGAAGCAGTCAACAGAAAGCAGCCTTGCTGCTTTCTGCCTGTTGCTGACACCTGTGGGAACAGCCCAGGTGCAAA---TATCAAAGTAGTCTAGTAGTTCAGATGTAGAGGAGGAGGC---
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54407285 305 +  91889043 ACTCTTTGcaaagtatgataccaggccaaccacactgacatcacttggaaacttgtcagaaataaggaatctcaggttccattctaaacccattgagtcagaatctgcatttaaacaagatcctcaaatg-tgtgt---tcattaacatatgagaaactctgCCCAAACACACCCGATCCCTGCCCCCACCACCCAGGAACACTCAACAGGAAGCTGCCAAACTGCTTGCTGCCCATTTCTGACAACTGTGGATACAAACTCGGTACGTATCGTATCTCAAGCATCCAGAGGTTCACAAGAGAAGAAGG-------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I

a score=21717.000000
s hg38.chr15_KI270850v1_alt    334882 14 +    430880 ATCCTCCTTTACAG
s panTro4.chr15              80116538 12 +  99548318 --CCTTGAGTACAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10125079 12 +  10928107 --CCTTGAGTAGAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17198066 12 - 121039945 --CCTTGAGTAGAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108412962 12 - 171882078 --CCTTGAGTAGAG
i macFas5.chr7              C 0 I 1
s papAnu2.JH685126              97352 12 +    130206 --CCTTGAGTAGAG
i papAnu2.JH685126          C 0 I 1
s calJac3.chr6               22237550 12 + 158406734 --CCTTGAGTAGAG
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54407590 14 +  91889043 ATCCTTGAGTGGGG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I
e chlSab2.chr29              21102108 13 -  24206276 I
e rheMac3.chr7              106679308 13 - 170124641 I

a score=1033688.000000
s hg38.chr15_KI270850v1_alt    334896 321 +    430880 AAAAATCAGCTTAGAAGGCTTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACGTGCTGCTGACCACACCCAGCCAGGCTTCCATCATCTACAAAACCACCTCTCAGCAATAGTGGCATACTGCATAGCAATATCCCAGGCAAGAAAAAGACCAAAGTATAAAGACTCAATTCAACATATTTTCTTAAGAGTTCTGGATCAAGCTATCTAAAGTATGTCTGTCCC-GGTCTGACCTTCAGCAAACATTACTGCTGCCTCCTCTATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACTCCAACATTCAATGTCATGAACTTGGCAT
s panTro4.chr15              80116550 322 +  99548318 AAAAATCAGCTTAGAAGGCCTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACATGCTGCTGACCACACCCAGCCAGGCTTCTATCATCTACAAAACCACCTCTCAGCAATAGTGGCATACTGCATAGCAATATCCCAGGCAAGAAAAAGACCAAAGTATAAAGACTCAATTCAACATATTTTCTTAAGAGTTCTGGATCAAGCTATCTAAAGTATGTCTGTCCCTGGTCTGACCTTCAGCAAACATTACTGCTGCCTCCTCTATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACTCCAACATTCAATGTCATGAACTTGGCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10125091 322 +  10928107 AAAAATCAGCTTAGAAGGCCTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACGTGCTGCTGACCACACCCAGCCAGGCTTCTATCATCTACAAAACCACCTCTCAGCAATAGTGGCATACTGCATAGCAACATCCCAGGCAAGAAAAAGACCAAAGTATAAAGACTCAATTCAACATATTTTCTTAAGAGTTCTGGATAAAGCTATCTAAAGTATGTCTGTCGCTGGTCAGACGTTCAGCAAACATTACTGCTGCCTCCTCTATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACTCCAACATTCAATGTCATGAACTTGGCAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17198078 321 - 121039945 AAAAATCCAC-TAGAAGGCCTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACGTGCTGCTGACCACACCCAGCCAGGCTTCTATCATCTACAAAACCACCTCTCAGCAATAGTGGCATACTGCATAGCAACATCCCAGGCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTTTCTTAAGAATTCTGGATCAAGCTATCTAAAGTGTGTCTGTCCCTGGTCTGACCTTCAGCAAACATTACTGCTGCCTCCTCCATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACTCCAACATTCAATGTCATGAACTTGGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106679321 319 - 170124641 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTACTGCTGATCATACCCAGTCAGGCTTCTATCATCTATAAAACCACCTCTCAGCAATAGTGGCATACTGCATAGCAACATCCCAGGCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTTTCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCTCCTCTATGC--TCTCAGAC-AACACAAGGTACCTCGGAACTCCAACATTCAATGTCATGAAGTTGGCGT
i rheMac3.chr7              I 13 I 6
s macFas5.chr7              108412975 319 - 171882078 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTACTGCTGATCATACCCAGTCAGGCTTCTATCATCTATAAAACCACCTCTCAGCAATAGTGGCATACTGCATAGCAACATCCCAGGCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTTTCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCTCCTCTATGC--TCTCAGAC-AACACAAGGTACCTCGGAACTCCAACATTCAATGTCATGAAGTTGGCGT
i macFas5.chr7              I 1 I 5
s papAnu2.JH685126              97365 319 +    130206 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTACTGCTGATCATACCCAGTCAGGCTTCTATCATCTATAAAACCACCTCTCAGCAATAGTGGCATACTGCATAGCAACATCCCAGGCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTTTCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCATACATTACTGCTGCCTCCTCTATGC--TCTCAGAC-AACACAAGGTACCTCGGAACTCCAACATTCAATGTCATGAAGTTGgcgt
i papAnu2.JH685126          I 1 I 6
s chlSab2.chr29              21102121 319 -  24206276 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTACTGCTGATCATACCCAGTCAGGCTTCTATCATCTATAAAACCACCTCTCAGCAATAGTGGCATACTGCATAGCAACATCCCAGGCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTTTCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCTCCTCTATGC--TCTCAGAC-AACACAAGGTACCTCGGAACTCCAACATTCAATGTCATGAAGTTGGCGT
i chlSab2.chr29             I 13 I 5
s calJac3.chr6               22237562 297 + 158406734 AAAAATAAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTCCTA-----GGCTGAACACACCCAGGCAGGCTTCTATCACCTACA---------------AATAGTGGCATACTGCATAGCAACATCCCAGGCAAG-AAAAGGCCAATGTCTAAAGACTCAATTCAACATGTTTTCCCAAAAGTTTTGGGTCAAGCCATCCAAAGTG----TGTCACTGGTCTGACCCTCAGCAAACCTTACTTCT-CCTCCTCTACAC--TTTCAGAT-ACCACAAGGTACCTCAGAACTTCAACATTCCATGTCATGATCTTGGCAT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54407604 313 +  91889043 AAAGATCAATGGAGAAAG-GTCTGAGTTAGGACCACAGTGCTTGGCTCATAGGTACTGCTAACCATACCCATCCAGGGTCCTTTCATCTGCAGAGAC-CTGTTAAGTAGTTGTGCCACATTGCACACCAACATCCCAGGCAATGGGAAGGTCAAAGTGTCAAGAC-----TCAACAGGCTTTCCCAAGAGTTTTGCATCAAGCTG-CCAGAGCG----TTTCCCTGGCCTGACCATGAGGGAACATTACTGCTGCCTCCTTTGTGCTTTCTCAGACAACCACGAGGTACTGGAGAGCACCAACCTTCTA-GTGACAAATATGGCAC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I

a score=261261.000000
s hg38.chr15_KI270850v1_alt    335217 127 +    430880 AA----------CAAtttttttttttt-------gacacggagtctcgctctgtcccaggctgaagtgcagtggcgtgatctcgactcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagcctcccaagta
s panTro4.chr15              80116872 128 +  99548318 AA----------CAAtttttttttttt------tgacacggaatctccctctgtcccaggctgaagtgcagtggcgtgatctcgactcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagcctcccaagta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10125413 131 +  10928107 AA----------CAttttttttttttt--tttttgacacggagtctc-ctctgtcccaggctgaagtgcagtggcgtgatctcgactcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagcctcccaagta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17198399 128 - 121039945 AA----------Ctttttttttttttt------tgacacagagtctcgctctgtcccaggctgaagtacagtggtgtgatcttgactcactgcaacctccgcctcctgggttcaagctatccgcctgcctcagcctcccaagta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106679646 134 - 170124641 AA----------AAttttttttttttttttttttgacacagactctcgctctcccctagactgaagtgcagtggcgtgatctcggctcactgcaaccgctgcctcctgggttcaagctattcgcctgcctcagccttctgagta
i rheMac3.chr7              I 6 C 0
s macFas5.chr7              108413299 134 - 171882078 AA----------ttttttttttttttttttttttgacacggagtctcgctctgccctagactgaagtgcagtggcgtgatctcggctcactgcaacctctgcctcctgggttcaagctattcgcctgcctcagccttctgagta
i macFas5.chr7              I 5 C 0
s papAnu2.JH685126              97690 144 +    130206 aattttttttttttttttttttttttttttttttgacatggagtctcgctctgccctagactgaagtgcagtggcatgatctcggctcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagccttctgagta
i papAnu2.JH685126          I 6 C 0
s chlSab2.chr29              21102445 133 -  24206276 AA-----------tttttttttttttttttttttgacacggagtctcgctctgccctagactgaagtgcagtggcgtgatctcggctcactgcaacctccgcctcctgggttcaagctattcgcctgcctcaccctcccgagta
i chlSab2.chr29             I 5 C 0
s canFam3.chr3               54407917  27 +  91889043 GA----------CAATTTTTAATTGTC---------------------------------------------------ATCTC--------------------------------------------------------AAGTA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859   0 + 158406734 C

a score=234691.000000
s hg38.chr15_KI270850v1_alt    335344 104 +    430880 gctgggattacaggcgcctgccaccacgccaggctaattgttgtatttttaatagagacggggtttcaccatgttggccaggctggtc-----ctcct--------gatccgcccac
s panTro4.chr15              80117000 104 +  99548318 gctgggattacaggcgcctgccaccacgccaggctaattgttgtatttttaatagagacggggtttcaccatgttggccaggctggtc-----ctcct--------gatccgcccac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10125544 104 +  10928107 gctgggattacaggcacatgccaccacgccaggctcatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtc-----ctcct--------gatccgtccgc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17198527 104 - 121039945 gctgggattacaggcgcatgctaccacgccaggctaatttttgtatttttaggagagacggagtttcaccatgttggccaggctggtc-----ctcct--------gatcttcccgc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106679780 117 - 170124641 gctgggattacaggcacacaccaccatgccaggctaatttttgtatttttagtacagacggcgtttcaccatgttggccaggctggtctcaaactcctgacctcaggatccgcccgc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108413433 117 - 171882078 gctgggattacaggcacacaccaccatgccaggctaatttttgtatttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggatccgcccgc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              97834 117 +    130206 gctgggattacaggcacacaccaccatgccaggctaatttttgtatttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggatccgcccgc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21102578 117 -  24206276 gctgggattacaggcacacaccaacatgccaggataatttttgtatttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggatccgcccgc
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859   0 + 158406734 C
e canFam3.chr3               54407944   0 +  91889043 C

a score=112231.000000
s hg38.chr15_KI270850v1_alt    335448 51 +    430880 cttggcatcccaaagtgctgggattacaggtgtgaaccaccgcgcccagcc
s panTro4.chr15              80117104 51 +  99548318 cttggcatcccaaagtgctgggattacaggtgtgaaccaccgcgcccagcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10125648 51 +  10928107 cttggcatcccaaagtgctgggattacaggtgtgaaccacgacgcccagcc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17198631 51 - 121039945 cttggcattccaaagtgctgggattacaggtgtgaaccaccgtgcccagtc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106679897 51 - 170124641 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacccagcA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108413550 51 - 171882078 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacccagcA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              97951 51 +    130206 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacccagca
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21102695 51 -  24206276 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacgcccagcA
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54407944 21 +  91889043 CTAGACATATCAA----------------------------GTACCCAG--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859  0 + 158406734 C

a score=13428.000000
s hg38.chr15_KI270850v1_alt    335499 4 +    430880 AACA
s panTro4.chr15              80117155 4 +  99548318 AACA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10125699 4 +  10928107 AACA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17198682 4 - 121039945 AACA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106679948 4 - 170124641 AACA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108413601 4 - 171882078 AACA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              98002 4 +    130206 aaca
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21102746 4 -  24206276 AACA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22237859 4 + 158406734 AACA
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I
e canFam3.chr3               54407965 0 +  91889043 C

a score=909017.000000
s hg38.chr15_KI270850v1_alt    335503 239 +    430880 ATTTTTAATAGAGGGCAGGGACTTCATAGACATC-------------GGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGATGAT-GAAGTGGCTCTTCTTACCAGGAGGCTCGATAGGCGATAGAAG----AAGGGCACATTATT-GGCCACACACAGGAATGCGGGATATTGGAATGCAG
s panTro4.chr15              80117159 239 +  99548318 ATTTTTAATAGAGGGCAGGGACTTCATAGACATC-------------GGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGAAGAT-GAAGTGGCTCTTCTTACCAGGAGGCTCGATAGGCTATAGAAG----AAGGGCACATTATT-GGCCACACACAGGAATGCGGGATATTGGAATGCAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10125703 239 +  10928107 ATTTTTAATTGAGGGCAGGGACTTCATAGACATC-------------GGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGAAGAT-GAAGTGGCTCTTCTTACCAGGAGGCTCGATAGGCTATAGAAG----AAGGGCACATTATT-GGCCACACACAGGAATGCGAGATATTGGAATGCAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17198686 239 - 121039945 ATTTTTAATTGAGGGCAGGGACTTCATAGACATC-------------AGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGAAGATGGAAGTGGCTCTTCTTACCAGGAGGCTCGATAGGCTATA-AAG----AAGGGCACATTATT-GGCCACACACAGGAATGCGGGATATCGGAATGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106679952 239 - 170124641 ATTTTTAATTGAGGGCAGGGACTTCACAGACATC-------------GGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAATAAGATGAC-GAAGTGGCTCTTCTTACCAGGAGGCTCAATAGGCTATAGAAG----AAGTACATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108413605 239 - 171882078 ATTTTTAATTGAGGGCAGGGACTTCACAGACATC-------------GGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAATAAGATGAC-GAAGTGGCTCTTCTTACCAGGAGGCTCAATAGGCTATAGAAG----AAGTACATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              98006 239 +    130206 ATTTTTAATTGAGGGCAGGGACTTCACAGACATC-------------GGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTgcacaaaagcaaaataagatGAC-GAAGTGGCTCTTCTTACCAGGAGGCTCAATAGGCTATAGAAG----AAGTACATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21102750 239 -  24206276 ATTTTTAATTGAGGGCAGGGACTTCACAGACATC-------------AGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAATAAGATGAC-GAAGTGGCTCTTCTTACCAGGAGGCTCAACAGGCTATAGAAG----AAGTGCATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22237863 234 + 158406734 ATTTTTAATT---GGCAGGGACTTCACAGACATC-------------GGACCCACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCCAAGTAAGGGTCAATCTGAACCTGCACAAAAGCAAGAGATGATGAT-GAAGTGTCTCTTCTCAGCAGGAGGATTGATAGGTTACA---G----AAGGGCACGTTACTGGGCTATACACAGGAATGTGGGATATCTAAATGCAG
i calJac3.chr6              C 0 I 312
s mm10.chr7                  81349736 219 + 145441459 ATTTTTAAATTGTGGTATGGACTTCATAGGCATCTACAATGCCCAGAGGACTCACCTGATCTCGGCAGAAGAAAGGACCAGGTTGTGAGCTGCAGATAAGACACAGAGAATCTTCTAGATAGGGGTCAATCTGAACCTGAGGAACAGCAATA---GAAGAT-AAAATGGCTCC-----------------ATGGGTCAGAGGAACTGTAGTTACACATTATT-G-----------------AGTATATAGGAATGTAG
i mm10.chr7                 I 706 C 0
s canFam3.chr3               54407965 196 +  91889043 ----------------------------------------------GGGACTTACCTGATCTCGACAGAAGAAAGGACCAGGTTGGGAACTGCAGATGTGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAA-GCAAAAACAGGTGAA-TGAGTGGCTCTTCTCTCCAGGAGGCCAAATGGGCCAGACGAG----AAACG-ACATTACTGGGATATACACAGGAATGCAGGAGGTT---------
i canFam3.chr3              C 0 C 0

a score=2318671.000000
s hg38.chr15_KI270850v1_alt    335742 644 +    430880 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGAGTTCTAGAGGACAGACTCATACACCATGCACAGTCAGGCTGGATGCCTCTGGGATTCAGGCAACCACACACCTTA--ATGCCTGGTCTTCTAGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAGTATAGGCAAGTGTTCGGAGGATTCCCAAAAGGTTGGAAAATAGGAAGTCAGGCTACTGAGCAATGCCAAAGAAATACCACAGTGAGGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGCGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCAGGAATTTGGCTCACTTCCCTAAACACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACTGCCCAAACCCCTCTCATATACCCCAGAGTAAGGGCATAAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGAACCTAGGACAACAGACACAAGCT--TCCCTTCTAACCAAATTCTCCCA
s panTro4.chr15              80117398 644 +  99548318 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGAGTTCTAGAGGACAGACTCATACACCATGCACAGTCAGGCTGGATGCCTCTGGGATTCAGGCAACCACACACCTTA--ATGCCTGGTCTTCTAGGC-AAACTGTA-CCTCAGTCCTCTATCAATTAGCAGTATAGGCAAGTGTTCGGAGGATTCCCAAAAGGTTGGAAAATAGGAAGTCAGGCTACTTAGCAATGCCAAAGAAATACCACAGTGAGGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTCGGCGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCAGGAATTTGGCTCACTTCCCTAAACACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACTGCCCAAACCCCTCTCATATACCCCAGAGTAAGGGCATAAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGAACCTAGGACAACAGACACAAGCT--TCCCTTCTAACCAAATTCTCCCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10125942 644 +  10928107 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGGGTTCTAGAGGACAGACTCATACACCATGCAGAGTCAGGCTGGATGCCTCTGGGATTCAGGCAACCACACACCTTA--ATGCCTGGTCTTCTCAGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATAGGCAAGTGTTCAGAGGATTCCCGAAAGGTTGGAAAATAGGAAGTCAGGCTACTTAGCAATGCCAAAGAAATACCACAGTGAAGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGCGTACAAAGACCAAGCCCACACCCAAACCTTAACCTCAATGTTAATTCTCAGGAGTTTGGCTCACTTCCCTAAACACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACTGCCCAAACCCCTCTCATATACCCCAGAGTAAGGGCATAAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGGTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGAACCTAGGACAACAGACACAAGCT--TCCCTTCTAACCAAATTCTCCCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17198925 643 - 121039945 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGGGTTCTAGAGGACAGACTCATATACCATGCAGAGTCAGACTGGATGCCTCTGGGATTCAGGCAACCACACACCTTA--ATGCCTGGTCTTCTTGGC-AAACTGTA-CCTCAGCCCTCTATCAATTATCAATATAGGCAAGTGTTCAGAGGATTCCCGAAAGGTTGGAAAATAGCAAGTCAGGCTACTTAGCAATGCCAAAGAAATACCACAGCGAGGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTT-CTCCTGGGCATACAAAGACCAAGCCCACTCCCAAACCCTAACTTCAATGTTAATTCTCAGGAGTTTGGCTCACTTCCCTAAACACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACTGCCCAAACCCCTCTCATACACCCCAGAGTAAGGGCATAAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGGACAACAGACACAAGCT--TCCCTTCTAACCAAATTCTCCCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106680191 648 - 170124641 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTTCTAGAGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGACGCCTCTGGAATTCAGGCAACCACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGAGCAAGTGTTCAGAGGATTCCCGAAAGGTTGGAAAATGGGAAGTCAGGCTACTCAGCAATGCCAGAGAAATACCACAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTTCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAACACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACTGCCCAAATCCCTCTCATATACTCCAGAGTAAGGGCATAAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGGACAACAGACACAAGCT--TCCCTTCTAACCAAATTCTCCCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108413844 648 - 171882078 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTTCTAGAGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCAACCACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGAGCAAGTGTTCAGAGGATTCCCGAAAGGTTGGAAAATGGGAAGTCAGGCTACTCAGCAATGCCAGAGAAATACCACAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAACACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACTGCCCAAATCCCTCTCATATACTCCAGAGTAAGGGCATAAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGGACAACAGACACAAGCT--TCCCTTCTAACCAAATTCTCCCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              98245 648 +    130206 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTTCTAGAGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCAACCACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGAGCAAGTGTTCAGAGGATTCCCGAAAGGTTGGAAAATGGGAAGTCAGGCTACTTAGCAATGTCAGAGAAATACCACAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCATTGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAACACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCCGGGTAGTAACTGCCCAAACGCCTCTCATATACTCCAGAGTAAGGGCATAAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGGACAACAGACACAGGCT--TCCCTTCTAACCAAATTCTCCCA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21102989 649 -  24206276 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAGGCACAGAA-CGGGGATCTAGAGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCAACCACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTACCCTCAGCCCTCTATCAATTAGCAATATGAGCAAGTGTTCAGAGGATTCCCGAAAGGTTGGAAAATGGGAAGTCAGGCTACTTAGCAATGCCAGAGAAATACCACAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAACACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACTGCTCAAACCCCTCTCATACACTCCAGAGTAAGGGCATAAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGGACAACAGACACAAGCT--TCCCTTCTAACCAAATTCTCCCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22238409 632 + 158406734 GATATCTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCACAAGTGCAGAA-AGGGATTCTAGA-----------TACACCATGCAGAGCCAGGCTGGATGCCTCCAGGATTTGGGCAACCACACATTTTA--ATGCCTTGTCTTCTCAGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATAGGCAAGTGTTGAGAGGATTCCTGAAAGGTTGGATAATGGAAAGTCAGGCTACTTAGCAATGTCAGAGAAACACCACAGTGAGGG-AGGCACCCTACACACTGAAGAGGCTTA-------ACAGTTCCAGTT-C-CTTCCTCCTGAGCCTACAAAGACCAAGCCCACTCCCAAACCCTAATCTCAGTGTTAATTCTCAGGAGTTTGGCTCAATTCCCTGAACACACCCAGCATAAACAGAGCTTCAGGTATCAGGGCCTGCCCTAGGCAGTAATTGCCCAAACCCCTCTCATATATCCCAGAGTAAGAGCATAAACCATCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCAACAAAAGCAGCACTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGGACA--AGACACAAGCT--TCCCTTCTAACCCAATTCTGCCA
i calJac3.chr6              I 312 C 0
s mm10.chr7                  81349955 530 + 145441459 GATGTT----TGTTCTTAAGGAGGC------AGAACTGTAGGC---AAGGGCTGAATATAGACCCTAAATGATAGACTCATACC-------------------ATACTTTTAGCATTTGGACAACCACACACCTTA--CTGGCTGTTCTTTCAGGC-AAAATGAA-CCCTAGTCTGGTATCAATTAGCAGCA--GTTAAGTGTTCAGAGGATTT-----AGGTAAGAGAGTTCATAAAATTGCTACTTAACAATTTCAGACAAATATCAAAATGAGG------ACCCTTCTCCCTAACCACACTCATATGCACACAGCCCC----------------GAGTCTAGAGAG---------------GAACGC--------AGGTTAA--CTCTGCTGCTGGGCTCACTTCTCCAA----------------------------TCTTG-GAGCTACACTGTTTTATAACTGATCCAA------------GTCTCAAAATAAGCACACTAACC-GCACACTCACCTTCTTGGTAAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGGTGACTGCTTTCAGATAACTACGTTGGTTATTGAAAGTCACACGACCAGACCCTAGGAAAATGGGCACAAGCTTATACCTTCTGCTCAAATTCTTTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54408161 556 +  91889043 ---------TCCTTTTAAAGGAG--------AGAATTATGGGC--AGAGCACAAAC-ACAGCCCCTAGAGGTCAGATGCACACACCACACAAAGCCAGGCTGGCAGGCTCCACAATATGGGCAACAACGTACATTA--CTGCATGGATTTCTTGGTGAAATCATA-CACCAGCATTTGATTACCCAGCAAAC--GGTAAGTGTTGAGGAGACGCAGGTCAGGTTGGAGAATGGGAAGCCAGGCTGCCTAGTGACGAC-GTCAAATACC-CAGTGAGCAGAGACACCTCGCATGTTGATGAGGCTCC-------AGGGTCCCAGCTCTACTCCCTCCTGAGCCTGCCACGGCCGGGCAC------------------------------------------------TCCCTGCGCACCCCCAGCATATGAACAGCTCCAGTTC-CA-GGCCTGCCTTGGGTGGTAAA--------------------GACCCACAGTAATGATAGAGACCAGCGCACTCACCTTCTTGCTGAACTTGGTGGTCTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTATGTTGGTTATTGAAAGTCACGCGACCAGACCCTAGAAACAAGGGAACAAACT--GACCTTCTAGCCAAATTCTCTCA
i canFam3.chr3              C 0 C 0

a score=10560.000000
s hg38.chr15_KI270850v1_alt    336386 6 +    430880 AATGCT
s panTro4.chr15              80118042 6 +  99548318 AATGCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10126586 6 +  10928107 AATGCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17199568 6 - 121039945 AATGCT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22239041 6 + 158406734 AATGCT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81350485 6 + 145441459 AATTCT
i mm10.chr7                 C 0 I 210
s canFam3.chr3               54408717 6 +  91889043 AATGCT
i canFam3.chr3              C 0 C 0
e chlSab2.chr29              21103638 0 -  24206276 C
e papAnu2.JH685126              98893 0 +    130206 C
e macFas5.chr7              108414492 0 - 171882078 C
e rheMac3.chr7              106680839 0 - 170124641 C

a score=4985.000000
s hg38.chr15_KI270850v1_alt    336392 4 +    430880 ACtt
s panTro4.chr15              80118048 4 +  99548318 ACtt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10126592 4 +  10928107 ACtt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17199574 4 - 121039945 ACtt
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22239047 4 + 158406734 ACTC
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54408723 4 +  91889043 ACTT
i canFam3.chr3              C 0 I 116
e mm10.chr7                  81350491 210 + 145441459 I
e chlSab2.chr29              21103638 0 -  24206276 C
e papAnu2.JH685126              98893 0 +    130206 C
e macFas5.chr7              108414492 0 - 171882078 C
e rheMac3.chr7              106680839 0 - 170124641 C

a score=52628.000000
s hg38.chr15_KI270850v1_alt    336396 103 +    430880 tttt-------------ttttttttttttt--------------------------------------------------ttttttgagatggagtctcgctctttcgcccaggctggtgtgcagtggcgcaatctctgctcactgcaagctctgcctcccggttt
s panTro4.chr15              80118052  97 +  99548318 tttt-------------ttttttttttttt--------------------------------------------------------gagacggagtctcgctcttttgcccaggctggtgtgcagtggcgcaatctctgctcactgcaagctctgcctcccggttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10126596  90 +  10928107 tttt-------------tttttt---------------------------------------------------------------gagacagagtctcgctctttcgcccaggctggtgtgcagtggcgcaatctctgctcactgcaagctctgcctcccagttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17199578 111 - 121039945 tttt-------------ttttttttttttt------------------------------------------ttttttttttttttgagatggagtcttgctctttcgcccaggctggtgtgcagtggcacaatctctgctcactgcaagctctgcctcccggttt
i nomLeu3.chr6              C 0 M 480
s calJac3.chr6               22239051 161 + 158406734 TTTTAACATGCAGGAAATCCTTTACTATACATACcagtactgtccaacagaaatataatgtgagctactatgtaactttatttcttgagacagagtctccctctgtcagccaggctggagtataatggcatga-----gctcactgcaacgtctgcatcccaggct
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81350491 210 + 145441459 I
e canFam3.chr3               54408727 116 +  91889043 I
e chlSab2.chr29              21103638   0 -  24206276 C
e papAnu2.JH685126              98893   0 +    130206 C
e macFas5.chr7              108414492   0 - 171882078 C
e rheMac3.chr7              106680839   0 - 170124641 C

a score=82823.000000
s hg38.chr15_KI270850v1_alt    336499 200 +    430880 cacgccattctcctgcctcagcctc---ccgagtagctgggactacaggcatctgccaccacacccagctaattttttgtatttttagtagagatcgggtttcacc--attagccagcatggtcttgatctcctgacctt--gtgacccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccg-agcctgcccT
s panTro4.chr15              80118149 200 +  99548318 cacaccattctcctgcctcagcctc---ccgagtagctgggactacaggcatctgccaccacacccagctaattttttgtatttttagtagagatcgggtttcacc--attagccagcatggtcttgatctcctgacctc--gtgacccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccg-agcctgcccT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10126686 202 +  10928107 cacgccactctcctgcctcagcctcagtcccctcagctgggactacaagcatctgccaccacgcccagctaattttttgtatttttagtagagatggggtttcacc--gttagccagcatggtctcgatctcctgacctc--gtgatccgcccgcctcggcctcccaaagtgct-ggattacaggcgtgagccaccg-agtctggccT
i ponAbe2.chr15_random      C 0 C 0
s calJac3.chr6               22239212 204 + 158406734 caaacgatcctcctgcctcagcttc---ccaagtatctgggactacaggcataagccaccatgcctagctaa-tttcggtattttttgtagagacagagtttcaccatattgcccaggctgatctcgaactcctgcactcaagtgatctgcccacctcagcctcccaaagtgctgggattataggcatgagccattgtggtcggccct
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81350491 210 + 145441459 I
e canFam3.chr3               54408727 116 +  91889043 I
e chlSab2.chr29              21103638   0 -  24206276 C
e papAnu2.JH685126              98893   0 +    130206 C
e macFas5.chr7              108414492   0 - 171882078 C
e rheMac3.chr7              106680839   0 - 170124641 C
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=34212.000000
s hg38.chr15_KI270850v1_alt    336699 17 +    430880 AATGCTACTCTTTTAAA
s panTro4.chr15              80118349 17 +  99548318 AATGCTACCCTTTTAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10126888 17 +  10928107 AATGCTACTCTTTTAAA
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106680839 17 - 170124641 AATGCTACTCTTTTAAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108414492 17 - 171882078 AATGCTACTCTTTTAAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              98893 17 +    130206 AATGCTACTCTTTTAAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21103638 17 -  24206276 AATGCTACTCTTTTAAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22239416 14 + 158406734 tatgtaa---ttttaaa
i calJac3.chr6              C 0 I 42
e mm10.chr7                  81350491 210 + 145441459 I
e canFam3.chr3               54408727 116 +  91889043 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=622554.000000
s hg38.chr15_KI270850v1_alt    336716 353 +    430880 ATGCAGGAAACCCTTTACGATACTagtgctgtccgacagaaatataatgtgagctactatgtaactttatttattttttgagacagggtctccctctgtcactcaggctggagtgtaatggcgtgatctcagctcactgcaacctctgcatcccaggctcaaacaat-ctcctgcctcagcctcccaagtagctgggactacaagcatgagccaccatgcctggctaatttttgta-tttttttgtagagacagggtttcaccatattgtccaggctggtcttgaactcctggactcaaacgatctgccccacctcggcctcccaaagtgccaggattataggtataagccatca
s panTro4.chr15              80118366 353 +  99548318 ATGCAGGAAACCCTTTACGATACTagtgctgtccgacagaaatataatgtgagctactatgtaactttatttattttttgagacagggtctccctctgtcactcaggctggagtgtaacggcgtgatctcagctcactgcaacctctgcatcccaggctcaaacaat-ctcctgcctcagcctcccaagtagctgggactacaagcatgagccaccacgcctggctaatttttgta-tttttttgtagagacggggtttcaccatattgtccaggctggtcttgaactcctggactcaaacgatctgccccagctcggcctcccaaagtgccaggattataggtataagccatca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10126905 353 +  10928107 ATGCAGGAAACCCTTTACGATACcagtgctgtccaacagaaatacaatgtgagctactatgtaaCtttatttattttttgagacagggtctccctctgtcactcacgctggagtataacggcgtgatctcagctcactgcaacctctgcatcccaggctcaaacaat-ctcctgcctcagcctctcaagtagctgggactacaagcatgagccaccatgcctggctaatttttatattttttttgtagagatggggtttcaccatattgtccaggctggtcttgaactcctggactcaaacgatctg-cccacctcagcctcccaaagtgccaggattataggtataagccatcA
i ponAbe2.chr15_random      C 0 I 10
s rheMac3.chr7              106680856 352 - 170124641 ATGCAGGAAACCCTTTATGATACcagtgctgtccaacagaaatctaatgtgagctacgatgttactttatttattttttgagacagggtctccctctgtcacccaggctggagtataatggcatgatctcagctccctgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcccggctaatttttgta--ttttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcctggactcaaacgatccg-cccaccgcggcctcccgaagtgctgggattatagccataagccgtca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108414509 352 - 171882078 ATGCAGGAAACCCTTTATGATACcagtgctgtccaacagaaatctaatgtgagctacgatgttactttatttattttttgagacagggtctccctctgtcacccaggctggagtataatggcatgatctcagctccctgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcctggctaatttttgta--ttttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcctggactcaaacgatccg-cccacctcggcctcccgaagtgctgggattatagccataagctgtca
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              98910 351 +    130206 ATGCAGGAAACCCTTTATGATACCAGTGCTGTCCAACAGAAATCTAATGTGAGCTACGAtgttactttctttattttttgagacagggtctccctctgtcacccaggctggagtataatggcgtgatctcagctcactgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcctggctaatttttgta--ttttttgtagagccaaggtttcaccatattgtccaggctggtcttgaactcctggactcaaac-atccg-cccacctcggcctcccgaagtgctgggattatagccataaGCTGTCA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21103655 348 -  24206276 ATGCAGGAAACCCTTTATGATACcagtgctgtccaacagaaatctaatgtgagctacgatgttac----tttattttttgagacagggtctccctctgtcacccaggctggagtataatggcgtgatctcagctcactgcaacctctgcatcccggaatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcctggctaatttttgta--ttttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcatggactcaaacgatcca-cccacctcggcctcccgaagtgctgggattatagccataagccatca
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81350491 210 + 145441459 I
e calJac3.chr6               22239430  42 + 158406734 I
e canFam3.chr3               54408727 116 +  91889043 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=189108.000000
s hg38.chr15_KI270850v1_alt    337069 155 +    430880 tggtcagcccttatgtaactttaaattttctagtagtcacactgaaattttaaaacagtggtgacattaattttaataatatattttattggccgggcacggtggctcacacctgtaaacccagtgctttgggaggccaaggtgggcggatcatg
s panTro4.chr15              80118719 155 +  99548318 cggtcagcccttatgtaactttaaattttctagtagtcacactgaaattttaaaacagtggtgacattaattttaataatatattttattggccgggcacggtggctcacacctgtaaacccagcactttgggaggccaaggtgggcggatcatg
i panTro4.chr15             C 0 C 0
s rheMac3.chr7              106681208 152 - 170124641 cggccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgacattaattttaataatatattttattggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcatg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108414861 146 - 171882078 cggccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgaca------ttaataatatattttattggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcatg
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              99261 152 +    130206 TGGCCAGCccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgacattaattttaataatatattttattggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcatg
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21104003 152 -  24206276 cggccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgacattaattttaataatatattttattggccatgcatgatggctcacacttgtaatcccagcactttgggaggccaaggtgggcagatcatg
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81350491 210 + 145441459 I
e calJac3.chr6               22239430  42 + 158406734 I
e canFam3.chr3               54408727 116 +  91889043 I
e nomLeu3.chr6               17199689 480 - 121039945 M
e ponAbe2.chr15_random       10127258  10 +  10928107 I

a score=395014.000000
s hg38.chr15_KI270850v1_alt    337224 220 +    430880 aggtcaagagatggagaccatcctggctaacatggtgaaa-ccccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatagcaccactgcactccagcacggcaacagagtgagactccatctcaaaaaa
s panTro4.chr15              80118874 220 +  99548318 aggtcaagagatggagaccatcctggctaacatggtgaaa-ccccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaagttgcagtgagctgagatagcaccactgcactccagcacggcaacagagtgagactccatctcaaaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10127268 221 +  10928107 aggtcaagagaatgagaccatcctggctaactcggtgaaacccccatctctactaaaaatacaaaaattagctgagcgtggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatagcaccactgcactccagcacggcaacagagtgagactccatctcaaaaaa
i ponAbe2.chr15_random      I 10 C 0
s rheMac3.chr7              106681360 220 - 170124641 aggtcaagagatggagaacatcctggccaacatggtgaaa-ccctgtcgccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagctactcaggaggctggggcaggagaatcactttaacccagaaggcagaggctgcagtgagccaagatcacaccacagtactccagcccggcaacagagtgagactccatctcaaaaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108415007 220 - 171882078 aggtcaagagatggagaacatcctggccaacatggtgaaa-ccctgtcgccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttggacccagaaggcagaggctgcagtgagccgagatcacaccacagtactccagcacggcaacagagtgagactccatctcaaaaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              99413 220 +    130206 aggtcaagagatggagaacatcctggccaacatggtgaaa-ccctgtctccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggctgcagtgagccgagatcacaccacagtactccagcacggcaacagagtgagactccatctcaaaaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21104155 220 -  24206276 aggtcaagagacggagaacatcctggccaacatggtgaaa-ccctatctccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagttactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggctgcagtgagccgagatcacaccatagtactccagcatggcaacacagtgagactccatctcaaaaaa
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81350491 210 + 145441459 I
e calJac3.chr6               22239430  42 + 158406734 I
e canFam3.chr3               54408727 116 +  91889043 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=-4012.000000
s hg38.chr15_KI270850v1_alt    337444 3 +    430880 aaa-----
s panTro4.chr15              80119094 3 +  99548318 aat-----
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10127489 3 +  10928107 aaa-----
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106681580 7 - 170124641 aaaaaaa-
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108415227 7 - 171882078 aaaaaaa-
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              99633 8 +    130206 aaaaaaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21104375 7 -  24206276 aaaaaaa-
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22239472 3 + 158406734 -----aat
i calJac3.chr6              I 42 C 0
e mm10.chr7                  81350491 210 + 145441459 I
e canFam3.chr3               54408727 116 +  91889043 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=287168.000000
s hg38.chr15_KI270850v1_alt    337447 124 +    430880 attttatttaaccctatatgttaataatatt---atttccaaatgtgaCAACAGCTGTGTTTCCAAAACTCAATGGGGCCACATTTAGCTGGTAGCTACCATATTCGTACCATATTTGACAGTGGAG--------
s panTro4.chr15              80119097 123 +  99548318 -ttttatttaaccctatatgttaataatatt---atttccaaatgtgaCAACAGCTGTGTTTCCAAAACTCAATGGGGCCACATTTAGCTGGTGGCTACCATATTCGTACCATATTTGACAGTGGAG--------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10127492 124 +  10928107 aTCTTATTTAACCCTATGTGTTAATAATATT---ATTTCCAAATGTGACAACAGCTGTGTTTCCAAAACTCAGTGGGGCCACATTTAGCTGGTGGCTGCCATATTCGTGCCATATTTGACAGTGGGG--------
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106681587 123 - 170124641 -ttttatttaaccctgtatgttaaaaatatt---atttccaaatgtgacaacagccatgtttccaaaactcaatggggccacatttagctggtggctaccatattCGTACCATATTTGACAGTGGAG--------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108415234 124 - 171882078 tttttatttaaccctgtatgttaaaaatatt---atttccaaatgtgacaacagccatgtttccaaaactcaatggggccacatttagctggtggctaccatattCGTACCATATTTGACAGTGGAG--------
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              99641 124 +    130206 aatttatttaaccctgtatgttaaaaatatt---atttccaaatgtGACAACAGCCATGTTTCCAAAACTCAATGGGGCCACATTTAGCTGGTGGCTACCATATTCGTACCATATTTGACAGTGGAG--------
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21104382 124 -  24206276 aatttatttaaccctgtatgttaaaaatatt---atttccaaatgtgacaacagccatgtttccgaaactcgatggggccacatttagctggtggctaccatattCGTACCATATTTGACAGTGGAG--------
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22239475 104 + 158406734 attttatttaaccctatatgttaaaaatatt---atttccaaatatgacactagccgtgttttcagaactcagt--agccacatttagctggtggctaccatattt------------------gaG--------
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54408843 106 +  91889043 attttatttaatccagtatatccaaaatattatcatttcaacatgtGCCACTAACCATATCTTAAGCATTCA----------------------GCAAGCACATTC-------ATTCAACAGTGTAGTTATGTAG
i canFam3.chr3              I 116 C 0
e mm10.chr7                  81350491 210 + 145441459 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=333844.000000
s hg38.chr15_KI270850v1_alt    337571 145 +    430880 ATCATGTTAGCGTGAACCATTCAGGAATGGGGGAAGAATTTGCAGATCAAGATGGG------------------------AAGGAAAGATAAGGGACT-CCTTCAGTGCAGGTA-GAGCATAGGTTAAGGTTAAAGGATTCAGAGTGGAAGCCAAGATGCAGATAGAACAC
s panTro4.chr15              80119220 123 +  99548318 ATCATGTTAGCGTGAACCATTCAGGAATGGGGGAAGAATTTGCAGATCAAGATGGG------------------------AAGGGAAGATA------------------------GAGCATAGGTTAAGGTTAAAGGATTCAGAGTGGAAGCCAAGATGCAGATAGAACAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10127616 145 +  10928107 ATCATGTTAGCATGAACCATTCAGGAATGGGCGAAGAATTTGCAGATCAAGATAGG------------------------AAGGGAAGAGAAGGGACT-CCTTCAGTGCAGGTA-GAGCATAGGTTAAGGTTAAAGGATTCAGAGTGGAAGCCAAGATGCAGATACAACAC
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106681710 169 - 170124641 ATCATGTTAGCGCAAACCATTCAGGAATGGGGGAAGAACTTGCTGATCAAGATggcagggtagggtagggcagggcagggcagggcagggACGGGACT-CCTTCAGTGCAGGTAGAAGCATAGG-TAAGGTTAAAGGTTTCAGAGTGGAAGCCAAGATGCAGATAGAACAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108415358 164 - 171882078 ATCATGTTAGCGCAAACCATTCAGGAATGGGGGAAGAATTTGCTGATCAAGATggc-----agggcagggcagggcagggcagggcagggACGGGACT-CCTTCAGTGCAGGTAGAAGCATAGG-TAAGGTTAAAGGTTTCAGAGTGGAAGCCAAGATGCAGATAGAACAC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              99765 159 +    130206 ATCATGTTAGCGCAAACCATTCAGGAATGGGGGAAGAATTTGCTGATCAAgatggc----------agggcagggcagggcagggacggGACGGGACT-CCTTCAGTGCAGGTAGAAGCATAGG-TAAGGTTAAAGGTTTCAGAGTGGAAGCCAAGATGCAGATAGAACAC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21104506 154 -  24206276 ATCATGTTAGCACAAACCATTCAGGAATGGGGGAAGAATTTGCTGATCAAGATGGC---------------AGGGCAGGGCAGGGCAGGGACGGGACT-CCTTCAGTGCAGGTAGAAGCATAGG-TAAGGTTAAAGGTTTCAGAGTGGAAGCCAAGATGCAGATAGAACAC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22239579 140 + 158406734 ATCATGTTGGCAGGAACCACGCAGGAATAGGGGAAGAATCTACAGATCAAGATAGG-----------------------------AAGGGAAGGGACT-CCTTCAGTGCAGGTAGAAGCATAGG-TAAGGTTGAAGGGTTCAGAGTGGAAGCCAAGATGCAGATAGAACAC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81350701 112 + 145441459 ATCACGTTGATATAAACCAT-------TGGGTAAAGA----------------------------------------------GGAAGGGAAGGGGCTCCCTCCAGTGCAGGTAGATGCAGAGG---AGGTCTACGGGCTCAG-GCAGAAACCACA--GCAAACTAAACTG
i mm10.chr7                 I 210 C 0
s canFam3.chr3               54408949 134 +  91889043 ACTGTGGTGGCACAAACCACTCAGAGGTGGGAGAGGGATTTGCTGAGTGAAATGGG---------------------------GGGTGGGGAGAGACT-CCTCTAGTGCAGGCAGATGCACAGG-CAGGGTTACA--------AGTGGGAAGCCAGGTACAGAGAGAACAC
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=5868245.000000
s hg38.chr15_KI270850v1_alt    337716 1568 +    430880 TTGTCTGAAGGGTAAGCCCAGCAGTTGAACTGAACCTCTCCTAGCCCTTAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTTCCTCCTCCGCTCCTGGGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGTATTGGTGAGTACATGGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--GTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATAC--CTCATCATTGACAT---TTTGCCAGGACTGGCGAATTGACCTCCTTTCTCAGAGGAGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACTT---CTGAGTTAGGAAAGCACAGG------CC------ACACTC---TGTTGCCT---GACTCACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGA----------------------------------------------------------------------------------------GCTTTTCAA---------------------------------------------------G--AACTTTTAATAAAAAACTCC-------AGGCAAGT--TCAGAGAATTGC-AGCCTTTTCATGAAAT-AGTACCTGTTGTCTGTTCCAAACTGGT--TTCGCTGTGAACTCTGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACCTCC-TGTAGTCTCCAATAGCTTTTTCTCCCACTGCGTGG---GAGATGGTGGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTGGTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCCTCACTCCCATG------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCAACCAAGCTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCCACAGAGAGA--GAGGTGCTTGCACGGCAAGGTACGTGCTCTGGAGATACTGAAGCTAA-----GCTAACGCCCTTACAGGGGTGAAAAGGTGCTGTTGCCCAATCTCAGGCACACAGGCGTCCAATAAACCACCCTGACTCCACCCCAACTGGAGTTGAATTTTACTGAGTCCATGTGTCCAGAATGGTA-----GAAGTGGACACA---GTACTCACTCATGCTGGAGAGTAAGCAAAAAAGTACCACATGGCCAAACCCAGGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGGGCTGTGGACACTGATGAAAAGGGCATAATCT-----------------GAAGTCCTCAAGAAAGGAAGGACTCACAGAGAAATTAAAGGCTAGGATCCTGAAGGACAGAGGGGTGGGAGTGCTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGCCT--TCAGAGGG-TTTGTG-CCAG-AGCAGTGGAAATGACTGGC
s panTro4.chr15              80119343 1568 +  99548318 TTGTCTGAAGGGTAAGCCCAGCAGTTGAACTGAACCTCTCCTAGCCCTTAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTTCCTCCTCCGCTCCTGCGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGTATTGGTGAGTACATGGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--GTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATAC--CTCATCATTGACAT---TTTGCCAGGACTGGCGAACTGACCTCCTTTCTCAGAGGAGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACTT---CTGAGTTAGGAAAGCACAGG------CC------ACACTC---TGTTGCCT---GACTCACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGA----------------------------------------------------------------------------------------GCTTTTCAA---------------------------------------------------G--AACTTTTAATAAAAAACTCC-------AGGCAAGT--TCAGAGAATTGC-AGCCTTTTCATGAAAT-AGTACCTGTTGTCTGTTCCAAACTGGT--TTTGCTGTGAACTCGGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACCTCC-TGTAGTCTCCAATTGCTTTTTCTCCCACTGCGTGG---GAGATGATGGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATAGTATGGTGCTGGTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCCTCACTCCCATG------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCAACCAAGCTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCCACAGAGAGA--GAGGTGCTTGCATGGCAAGGTACATGCTCTGGAGATACTGAAGCTGA-----GCTAAGGCCCTTACAGGGGTGAAAAGGTGCCGTTGCCCAATCTCAGGCACACAGGCGTCCAATAAACCACCCTGACTCCACCCCAACTGGAGTTGAATTTTACTGAGTCCATGTGTCCAGAATGGTA-----GAAGTGGACACA---GTACTCACTCATGCTGGAAAGTAAGCAAAAAAGTACCACATGGCCAAACCCAGGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGGGCTGTGGACACTGATGAAAAGAGCATAATCT-----------------GAAGTCCTCAAGAAAGGAAGGACTCACAGAGAAATGAAAGGCTAGGATCCTGAAGGACAGAGGGGTGGGAGTGCTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGCCT--TCAGAGGG-TTTGTG-CCAG-AGCAGTGGAAATGACTGGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10127761 1564 +  10928107 TTGTCTGAAGGGGAAGCCAAGCAGTTGAACTGAACCTCTCGCAGCCCTTAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGTGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTGAGTACACAGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATAC--CCCATCATTGACAT---TTTGCCAGGAATGGTGAATTGACCTCCTTTCTCAGAGGAGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACTT---CTGAGTTAGGAAAGCACAGG------CC------ACACTC---TGTTGCCT---GACTCACTCAGAAAATCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGA----------------------------------------------------------------------------------------GCTTTTCAA---------------------------------------------------G--AACTTTTAATAAAAGAAACC-------AGGCAAGT--TCAGAGAATTGT-AGCCTTTTCATGAAAT-AGTACCTGTTGTCTGTTCCAAACTGGT--TTCGCTGTGAACTCTGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACCTCC-TGTAGTCTCCAATTGCTTTTTCTCCCACTGCGTGG---GAGATGGTGGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTGGTATATGCTGATCTGCAGACCTGGGTCAGGC--CTCTCCTCACTCCCATA------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAAGGGCCAACCAAGCTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCCACAGAGAGA--GAGGTGCTTGCATGGCAAGGTACGTGCTCTGGAGATACTGAAGCTGA-----GCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGCTGCCCAATCTCAGGCACGCAGGCGTCCAATAAACCACCCTGACTCCACCCCAACTGGAGTTGAATTTTACTGAGTCCATGTGTCCAGAATGGTA-----GAAGTGGACACA---GTACTCACTCATGCTGGAGAGTAAGCAAAAAAGTACCACATGGCCAAACCCAGGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGGGCTGTGGACACTGATG--AAGAGCATAATCT-----------------GAAGTCCTCAAGAAAAGAAGGACTCACAGAGAAATTAAAGGCTAGGATCCTGAAGGACAGAGGGTTGGGAGTGCTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGGCT--TCAGAGGG-TTTGTG-CCAG-AGCGGTGGAAATGACTGGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17200169 1558 - 121039945 TTGTCTGAAGGGTAAGCCCAGCAGTTGAACTGAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCACTGGTGAGTACGCGGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGGAGGTAGGTTAGCCACAT--CTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATAC--CCCATCATTGACAT---TTTGCCAGGACTGGCAAATTGACCTCCTTTCTCAGAGGAGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACTT---CTGAGTTAGGAAAG-------------C------ACACTC---TGTTGCCT---GACTCACTCAG-AAGTCCTCCTCCCGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGA----------------------------------------------------------------------------------------GCTTTTCAA---------------------------------------------------G--AACTTTTAATAAAAGAAACC-------AGGCAAGT--TCAAAGAATTGC-AGCCTTTTCATGAAAT-AGTACCTGTTGTCTGTTC--AAATGGT--TTCGCTGTGAACTCTGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACCTCC-TGTAGTCTCCAACTGCTTTTTCTCCCACTGCGTGG---GAGATGGTGGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTGGTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCCTCACTCCCATG------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCAACCAAGCTTTCACACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCATGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCCACAGAGACA--GAGGTGCTTGCATGGCAAGGTACGTGCTCTGGAGATACTGAAGCTGA-----GCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAATCTTAGGCATGCAGGCGTCCAATAAACCACCCTGACTCCACCCCAACTGGAGTTGAATTTTACTGAGTCCATGTGTCCAGAATGGTA-----GAAGTGGACACA---GTACTCACTCATGCTGGAGAGTAAGCAAAGAAGTACCACATGACCAAACCCAGGAGCCCAGCACTGTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGGGCTGTGGACACTGATGAAAAGAGCATAATCT-----------------GAAGTCCTCAAGAAAGGAAGGACTCACAGAGAAATTAAAGGCTAGGATCCTGAAGCACAGAGGGGTGGGAGTACTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGGCT--TCAGAGGG-TTTGTG-CCAG-AGCAGTGGAAATGACTGGA
i nomLeu3.chr6              M 480 C 0
s rheMac3.chr7              106681879 1591 - 170124641 TTGTCTGAAGGGTAAGCCCAGCAGTTGAACTGAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATAC--CCCATCATTGACAT---TTTGCCAGGACTAGTGAATTGACCTCCTTTCTCAGAGGAGCTGATCAAAA-CCTAGTGGTTAAGCCCACAGACTT---CTGAGTTAGGGAAGCACAGG------CC------ACACTC---TGTTGCCT---GACTCACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGA----------------------------------------------------------------------------------------GCTTTTCAA---------------------------------------------------G--AACTTTTAATAAAAGAAACC-------GGGGAAGT--ACAGAGAATTGC-AGCCTTTTCCTGAA-----CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTCTAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACCTCT-TGTAGTCTCCAACTGCTTTTTCTCCCACTGCATGGTCTGAGATGGTGGGTAGAGGGGTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTAAGGTGCTGGTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCCTCACTCCCATGGGGAAGTATCACAATCTTGGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCAACCAAGCTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCCACAGAGAGA--TAGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGCATCCAATAAACCACCCTTACTCCACCCCAACTGGAGTTGAATTTTACTGAGTCCATGTGTCCAGAATGGTA-----CAAGTGGACAGA---TTACTCACTCATGCTGGAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGGGCCGTGGACACTGATGAAAAGAGCATAATCT-----------------GAGGTCCTCAAGAAAGGAAGGACTCACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGATGGGAGTGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAGGCT--TCAGAGAG-TTTGTGCCCAG-AGCAGTGGAAATGACTGGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108415522 1573 - 171882078 TTGTCTGAAGGGTAAGCCCAGCAGTTGAACTGAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCC-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATAC--CCCATCATTGACAT---TTTGCCAGGACTAGTGAATTGACCTCCTTTCTCAGAGGAGCTGATCAAAA-CCTAGTGGTTAAGCCCACAGACTT---CTGAGTTAGGGAAGCACAGG------CC------ACACTC---TGTTGCCT---GACTCACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGA----------------------------------------------------------------------------------------GCTTTTCAA---------------------------------------------------G--AACTTTTAATAAAAGAAACC-------GGGGAAGT--ACAGAGAATTGC-AGCCTTTTCCTGAA-----CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTCTAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACCTCT-TGTAGTCTCCAACTGCTTTTTCTCCCACTGCATGGTCTGAGATGGTGGGTAGAGGGGTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTAAGGTGCTGGTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCCTCACTCCCATG------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCAACCAAGCTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCCACAGAGAGA--GAGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGCATCCAATAAACCACCCTTACTCCACCCCAACTGGAGTTGAATTTTACTGAGTCCATGTGTCCAGAATGGTA-----CAAGTGGACAGA---TTACTCACTCATGCTGGAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGGGCCGTGGACACTGATGAAAAGAGCATAATCT-----------------GAGGTCCTCAAGAAAGGAAGGACTCACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGATGGGAGTGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAGGCT--TCAGAGAG-TTTGTGCCCAG-AGCAGTGGAAATGACTGAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126              99924 1577 +    130206 TTGTCTGAAGGGTAAGCCCAGCAGTTGAACTGAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAATGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTGAGTACACGGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGAAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATAC--CCCATCATTGACAT---TTTGCCAGGACTAGTGAATTGACCTCCTTTCTCAGAGGAGCTGATCAAAA-CCTAGTGGTTAAGCCCACAGACTT---CTGAGTTAGGGAAGCACAGG------CC------ACACTCTGTTGTTGCCT---GACTCACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGA----------------------------------------------------------------------------------------GCTTTTCAA---------------------------------------------------G--AACTTTTAATAAAAGAAACC-------GGGCAAGT--ACAGAGAATTGC-AGCCTTTTCATGAA-----CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTCTAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACCTCT-TGTAGTCTCCAACTGCTTTTTCTCCCACTGCATGGTCTGAGATGGTGGGTAGAGGGGTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTAAGGTGCTGGTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCCTCACTCCCATGG-----------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCAACCAAGCTTGAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCCACAGAGAGA--GAGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTGCAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGCATCCAATAAACCACCCTTACTCCACCCCAACTGGAGTTGAATTTTACAGAGTCCATGTGTCCAGAATGGTA-----CAAGTGGACAGA---GTACTCACTCATGCTGGAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTT---CAACTGTGAGGTTCCAACAAAGGGCCGTGGACACTGATGAAAAGAGCATAATCT-----------------GAGGTCCTCAAGAAAGGAAGGACTCACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGATGGGAGTGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAGGCT--TCAGAGAG-TTTGTGCCCAG-AGCAGTGGAAATGACTGAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21104660 1571 -  24206276 TTGTCTGAAGGGTAAGCCCAGCAGTTGAACTGAACCTCTCCTAGCCTGGAGGCACGCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGTAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATAC--CCCATCATTGACAT---TTTGCCAGGACTGGTGAATTGACCTCCTTTCTCAGAGGAGCTGATCAAAA-CCTAGTGGTTAAGCCCACAGACTT---CTGAGTTAGGGAAGCACAGG------CC------ACACTC---TGTTGCCC---GACTCACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGA----------------------------------------------------------------------------------------GCTTTTCAA---------------------------------------------------G--AACTTTTAATAAAAGAAACC-------GGGCAAGT--ACAGAGAGTTGC-AGCCTTTTCATGAA-----CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTCTAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACCTCTATGTAGTCTCCAAATGCTTTTTCTCCCACTGCATGG---GAGATGGTGGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTGGTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCCTCACTCCCATG------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCAACCAAGCTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCCACAGAGAGA--GAGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGCATCCAATAAACCACCCTTACTCCACCCCACCTGGAGTTGAATTTTACTGAGTCCATGTGTCCAGAATGGTA-----CAAGCGGACAGA---GTACTCACTCATGCTGGAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGGGCCGTGGACACTGATGAAAAGAGCATAATCT-----------------GAGGTCCTCAAGAAAGGAAGGACTCACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGATGGGAGTGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAAGCT--TCAGAGAG-TTTGTGCCCAG-AGCAGTGGAAATGACTGAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22239719 1566 + 158406734 ATCTCTGAAGGGTAAGCCGAACAGTTGAACTGAACCTCTCCTAGCCAGGAGGCACTCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGTCGCCTCTGCCCCTGCAGCTTCTGAAGTCCCTGTTCTTAATCTGCTGCACAGCATCGGTGAGTACACGATGTTCCTTCCTGACCAGATTCAGTGTGGGTGTGAAGACTAAGCATTTGGGGAAGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCCACCTCCATAC--CCCATCACTGAGATTACTTTGTCAGGACTGGTGAACTGACCTCCTTCCTTAGAGGAGCTGATCAAAA-CCGAGTGGTTAGACCCACAGACTT---CTGAGTTAGGAAAGCACAGGCTATGACC------ACACTC---TGTTGCGT---GACTCACTCAGTAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGA----------------------------------------------------------------------------------------GCTTTTAAA---------------------------------------------------G--AACTTTTAATAAAGGAAACC-------AGGCAAGT--TCAGAGTATTGC-AGCCTTTTCATGAAAC-AGTACCTGTCGTCTGTTCCAAACTGGT--TTGGCTGTAAACTCTGAGCTTCCAA-CAAAGTTCCT--ACCTGGCTCTTACT--TCTTATCACCTCC-TGTAGTCTCCAATCGCTTTTTCTCTCCCTGCATGG---GAGATGG-GGGTAGAGGGCTAGATGCAGAGGGGCCAGTACTCGTGACCTGACTAG---AAGATATT--GCTGCTGGTATGTGCTGATCTGCAGAGCCGGGTCAGGCCTCTCTCCCCACTCCCATA------------------GGGAATTATCACAATCTTGGTCTA-----CTCCCAGGAGCCAACCAAGCTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTTCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCGGCATTGAGCATCCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCTGCTAATACCCAGGGGATCACCTGCACCTGAAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAACCACAGATAGA--GTGGTGCTTGCAAGGCAAGGCGCATGCTCTGGAGATACTGAAGCTGG---CTGCTAAGGCCCTTTCAGGGGTGAAAAGGCGTTGTTGCCCAGTCTCAGGCACACAGCCATCCAGTAAACCACCCTTACTCCACCCCAACTGGAGTTGAATTTTACTGAGTCCATGTGTCCAGAATGGTA-----GAAGTGGACACA---GTACTCACTCATGCTGGAGAGTAAGCAAAAATGTACCA------------AAAGAGCCCAGCATTCTATTTCAACCTCCAACAACTGTGTGGTTCCAACAAAGGGCTGTGGACACTGATGAAAAGAACAGAATCT-----------------GAAGTCCTCAAGAAAGGAAGGACTCACAGAGAATTTAAAGGCTAGGATCCTGAAGGACAGAGGGGTGGGAGTGTTTATGGTATTTGTACGAGATGGTTACTAGCCCCAACCTAGGCT--TCAGAGGG-TTTGTACCCAG-AGCAGTGGAAATGACTGGA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81350813 1596 + 145441459 -TTTCCAAAGGGCAGGAACAGCACTCAAGCCTTGCCGTTCCCAG-----AGGTACCGTAGAGAACTAGAAAGGAGCAGGAGAGCTAGGAGAATCCCTGTCCTGCCAAGTGCTGCCCCTGCT-CTACAGCCTCTCAAGT-CCTAGTCTCCATCTGCAGCTTAGCACTGACAAGCACACAGTGCTCCTCCCTGGCCATATTCACTGTGGGTGGGTAGACCAGGCATCTGGGAAGGT-GCTTAACTAAATGCCTTGAT--CAGAGTCCA-----------GCTCTACTTCTAAGT--ACAATCACAGAGAC---TC--ACTGCACTCG-GAACTAACCTCCTTTCTCAGAAAGGCCGATCAAAA-CT---CGGTCAAG-ACATGGACAT----TAAGATAGAACAGCTCAAT------GG------ATATGC---AATTTTTTTAGAAATTATCCAGAAAGC---------AACTGACCT-GTCTCTAACTCTAGACAACATCAAAGATGTAAAAATGAAAACAAATTTCCCTTCCTTTTCCTTCTTCCCACTTCCCTTCTTTCCTgacaaggtctcaatatgtagtcctggatgcctttgaactcagagatccacctgcctctatttcccaagtactgggactacaggcatgtg--aactttgcctggGAAGAACCTTATTAAAGGAACGTTCTCAGTAAAATGT-AGTCTTTAAATGCA-----CA------GTTTGTCCAAAACTAGTACTTGGTTGTGTACTTTGAATTTCCAA-CAAACCTCTT--TCCTCCTTTTCACCAGTACTATCACAGTC-------CTACAATTAACCTTTTCCCCAATGTAT-----GAAATAGC-AGCAGA-AGCAAGATGCAGACAGGCCAGCACCGTTAGCTT--CTGGAGGAA-------------------ATGATGATCTGCAGACCTGGGTCAGG----TCTCTACACTCCCAAG------------------GGTAAGTATTACCATCTTAATCTA-----CTCCCAGGGGC--ACCAAGCCTTCCCACAAAGAAGTAGGACACTCACCAATGGGGTACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCATTCAAGATGGCAGCCAGAGCCTCAGCATTGAGCATCCCGTGCAAGGCACCAACAAACACCGTCCTGCTGGGATCCAGCCTCTGAGATGGGCTCCAGACAAAGTTGCTGTCAGCCAAGACCCAAGGGATTACCTGTACCTGAAAACC-CCCAAAGGTTTATCAG--CTGGCAT----CTTCAGAGAGACCGAGCTTCCTGTGCAGTGGGGTACATGCTTTG--GACACTGCAGCTGCAG-CTGCTGTGA-CTGCACAAGGCTGGAAGGGCA--GTCACCCA-TCTGAGGCACACAGGCTT-------------------------TAACGTAAGTTGAATTG---------CCTTTGTTCATAATGATC-----AAAGCAAATACAACTGCACTTGCTCATTCTGCAGAGTAATCAAGAA----------GGGCCAACTGACAGGCCCAGGATCCTAT---AACTTC------------------AACCAAGGGCCACAGGAACT----AACAGAGCACAAGTTCTCACAAAAAGGAAACAAGAGTCCTTGTGACAAG-AGAACTCACAGAACACTTAACAGTTAGAAGCACGGAGGACAGAAAGATGG--ATGCTTATGGTGTCACT--GAGATAGTTACTCG-TCTCAACCAGGATACTTAGAGGGCTTTGTT-CCAGCAACAATGAGAATATCTTCC
i mm10.chr7                 C 0 I 175
s canFam3.chr3               54409083 1527 +  91889043 CTCTCTGAAGGGAGGGC--AGCAGGCAA-----CCCCCTCCTGGCCTGGAGGTAGTCTGAAGACCT-------AGCAGGGAAGCCAGAAGACGACTCATCCTGCCAAATGCTCCCTCTGC-CCTGCCGCGTCTCACGCCCCTGTTCCCAGCTGGCAGTGCAGCACTTATGAGCACAGAGTGCTCCTTCCTGACCAGATTCAGTGTGGGTGGGCAGAGTAAGCACTTGGGGAGGTGGGTGAGCCAGGG--CTTGATCACAAAGTTTAGGCTCTGCTCTGCTCCACCTCCAAACCACCACTCAAGATTAT---TCTGCTTTGGCTGAGGAATGAAGCTCCTTTCTCAGGGGAGTTGACCAAAAGCCCAACAGTTAAGTCCACCAACTCCCCCTACGCTAGGATGGCACAGG------CCATGAGTATACTC---TGTTGCCC---AAGTCGCCCAGGATCTCCTTCTA----------TGGTCTCTGACCCTAGA----GATAGA----------------------------------------------------------------------------------------GTTCTTGAA---------------------------------------------------AGTAACCCTTAGTATAAAAAAAC-------AGGCAAAT--TCAGAGAAGTCCTGGTCTTTTAATGAAATGATTACCTGTTCT-TGTCCCAGACTGGT--GTGGCTATGCACTCTGAGCTTCCAACCAAAGTTCCT--GTCTCATGTTCACT--ACCTATGATCTAC----------------CACTTTCTCCCCCTTTGTGG---GATGTGGTAGG-AGAGAGGTGGGTGC--AAGGGGCAGTACCAATGGCTTATCTACAAAAAGATGGTATGCTGCTGATAGATGCTGATCTGTGGACCTGGGTCAGGCCTCCCTCTCCACTCCCGT-------------------GGGAAGTATTACAATCTCAGTCTAGCAAGGTCCCAGGGGCC-ACCAAATTTTCCCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCATTCAAGATGGCTGCAAGGGCCTCAGCATTGAGCATCCCATGCAGAGCACCGACAAACACCGTCCTGCTGGAGTCAAGTCTCTGAGATGGGTTCCGGATAAAGTTGCTGTCAGCCAAGACCCAGGGAATCACCTGCACCTGGAAACCACCCAAAGGTGCGTGAG-CCTAGCAGGGAGCC----AGAGA--GAGGTTCTCATACCGTGAGGTGCATGCTTGGGAGGTCCTCAAACCGG-GCCTACCAGGCCCATCCTGTGGGGGAACAGGTG-TGCTGCCCAGTCCCAGGCAGACACTC--------AGCTACC---ACCTCACCCCAACCTAAGCTGGGTTTTACTGGGTCTGTGTGTCCAAAATGGGGAAAACCAAGTGGA-ACA---GCAGCCACCCAT-CTTCAGAGCAAGCAAAACAGT-CCGAGCTGTCACACCCAGGAACCTAGCACTCTGCCACAACCAT---CAACTATATGGTTCCAGTAGAGGACCACAGAGCC--ATGGAAAGCA-------T-----------------GATGTCCTTAGGGCAGGAAGGACTC----AGAAACTGAAGGCTAACAGTA-GAAGGTCAGAGGGTTGGGA-TGCTTGAAGTCCCACTAGGAGATGGTCACTGG-CCCAATGTGGGCA--TCAACGGG-TGTGTGTCAGG-AACAGTGGGAGTGACTGGA
i canFam3.chr3              C 0 C 0

a score=9972.000000
s hg38.chr15_KI270850v1_alt    339284 3 +    430880 GAG
s panTro4.chr15              80120911 3 +  99548318 GAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10129325 3 +  10928107 GAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17201727 3 - 121039945 GAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106683470 3 - 170124641 GAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108417095 3 - 171882078 GAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             101501 3 +    130206 GAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21106231 3 -  24206276 GAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22241285 3 + 158406734 GAC
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54410610 3 +  91889043 GGG
i canFam3.chr3              C 0 I 21
e mm10.chr7                  81352409 175 + 145441459 I

a score=126608.000000
s hg38.chr15_KI270850v1_alt    339287 42 +    430880 AGGTTGGGTAGAAAGTCACAT-ACAAGATCCCTGGAGTCTTAA
s panTro4.chr15              80120914 42 +  99548318 AGGTTGGGTAGAAAGTCACAT-ACAAGATCCCTGGAGTCTTAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10129328 42 +  10928107 AGGTTGGGTAGAAAGTCACAT-ACAAGATCCCTGGAGTCTTAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17201730 43 - 121039945 AGGTTGGGTAGAAAGTCACATAACAAGATCCCTGGAGTCTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106683473 42 - 170124641 AGGCTGGGTAGAAAGTCACAT-ACAAGATCCCTGGAGTCTTGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108417098 42 - 171882078 AGGCTGGGTAGAAAGTCACAT-ACAAGATCCCTGGAGTCTTGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             101504 42 +    130206 AGGCTGGGTAGAAAGTCACAT-ACAAGATCCCTGGAGTCTTGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21106234 42 -  24206276 AGGCTGGGTAGAAAGTCACAT-ACAAGATCCCTGGAGTCTTGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22241288 41 + 158406734 AGGTCGGGTAGTAAGTCACAT-ACAAGAT-CCTGGAGTCTTGT
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81352409 175 + 145441459 I
e canFam3.chr3               54410613 21 +  91889043 I

a score=4747491.000000
s hg38.chr15_KI270850v1_alt    339329 1492 +    430880 AGGGCTGGGGCTGACCATGTCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAAACCTTGTAGAGCAGGTGGAGGAGTCCAGAATGA------------------AG--------------------------------------TGAAGATCTA---AAAAT----------------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTAGTTTCAAAGGACAGGTGATTAAGACTTGGACAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGACCAAAGAGATTCTTCAACAGAAGAGTCTGCAGTACTCAGACAGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGGTAGGTGCTGGGCCT---ACACGGTCTTGGGATGAGAGGACCT-----GGCAGAAGTTACAAGAGGGGAGCCAATTTCACTGGAAGATGAAAAAGC----------------------------------------CAATTTTG--------CCCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGACATCCCGAAGAAGG-------------------ATCCCACAGGAAGGTGAGGCTCAGGTAGGACATG-AGGCTAGAAAGGTGAATCT-GGGTCTAAAGGTGAGAG--AAGCCAC-AAAGTGAGTCATTTATCTGAACTAGAAAAGAAGA----AGGGAGTCAAAGATTGGCTATATTGGCTATGTTGGTGCTGGCGGGGAGAGGAACACAAAGGAAA-AAGAAAAGTAGAGAGGAAGGAGAACTGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGTAAGGTGATG-GGAGGGAATGGGAGACAGGATGGTGTCTACAGGGGCACTGAGGAGGAAGGGGAAGGGCT--CTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----GGGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACAAGCTCCAGAGAATAAAGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCACTGTGGGCAGCCAGAGGATGAGCCTGCC----CTCTCTCTAACACAGAAC--------------------------------AAGAGCCAGCTTTGTTACATGGATT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTT--CTCCTCTTACCCTATAGATt-----------------------tttttagagaagctttaaggtttacagtaaatctgagcagaaagtacagggattctccaaatactctctgcccccacacttgcgtgacttcccc-actatcaggatcccgcatgagagtggaacattttt------------------ttatactgacccatcatccccaccgaaagtccatggtttgcatcagagttcaatcctggtgtttcttttaccttctatgggtttggaccaaagtataatgacatgtatccacca---------ta-----tacagaata--gtttcactg--ccctaaaaatcctctgtgctatgtc---tcttcatcccttcctgcta---aacccctggcaaccactgatcttttttacta-aaataggcattttagtttcccatcttatagaaGagaagaggaaacaaagtttcagagatattaaatatctagtccaatgtcacaAAAGTTGTGTGCTCTCAAAT----CCGATTTT
s panTro4.chr15              80120956 1476 +  99548318 AGGGCTGGGGCTAACCATGTCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAAACCTTGTAGAGCAGGTGGAGTTGTCCAGAATGA------------------AG--------------------------------------TGAAGATCTA---AAAAT----------------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTAGTTTCAAAGGACAGGTGATTAAGACTTGGACAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGACCAAAGAGATTCTTCAACACAAGAGTCTGCAGTACTCAGACGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGGTAGGTGCTGGGCCT---ACACGGTCTTGGGATGAGAGGACCT-----GGCAGAAGTTATAAGAGGGGAGCCAATTTCACTGGAAGATGAAAAAGC----------------------------------------CAATTTTG--------CCCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGACATCCCGAAGAAGG-------------------ATCCCACAGGAAGGTGAGGCTCAGGTAGGACATG-AGGCTAGAAAGGTGAATCT-GGGTCTAAAGGTGAGAG--AAGCCAC-AAAGTGAGTCATTTATCTGAACTAGAAACGAAGA----GGGGAGTCAAAGATTGGCTATATTGGC---------GCTGGCGGGGAGAGGAACACAAAGGAAA-AAGAA-----GAGAGGAAGGAGAACTGCATCAGCCTGTAGCCCGTGAATCAAAGAAAGATT--AAATCCCTGTAAGGTGATGAGGAGGGAATGGGAGACAGGATGGTGTCTACAGGGGCACTGAGGA---AGGGGAAGGGCT--CTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----GGGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACGAGCTCCAGAGAGTAAAGAAGCAGAGAAGGTAGGGAAGCTGTGTGTCACTGTGGGCAGCCAGAGGATGAGCCTGCC----CTCTCACTAACGCAGAAC--------------------------------AAGAGCCAGCTTTGTTACATGGATT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTT--CTCCTCTTACCCTATAGATt-----------------------tttttagagaagctttaaggttcacagcaaatctgagcagaaagtacagggattctccaaatactctctgcccccacacttgtgtgacttcccc-actatcaggatcccgcatgagagtggaacattttt------------------ttatactgacccatcatccccacccaaagtccatggtttgcatcagagttcactcctggtgtttgttttaccttctatgggtttggaccaaagtataatgacatgtatccacca---------ta-----tacagaata--gtttcactg--ccctaaaaatcctctgtgctatgtc---tcttcatcccttcctgcta---aacccctggcaaccactgatctttttTACTA-aaataggcattttagtttcccatcttatagaagagaagaggaaacaaagtttcagagatattaaatatctagtccaatgtcacaAAAGTTGTGTGCTCTCAAAT----CCGATTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10129370 1494 +  10928107 AGGGCTGGGGCTGACCATGTCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAAACCTTGTAGAGCAGGTGGAGGAGTCCAGAATGA------------------AG--------------------------------------TGACGATCTA---AAAAT----------------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTAGTTTTAAAGGACAGGTGATTAAGACTTGGACAAGGCTTGTGACAACACACAGAGAACAGGCCAAGACCAAAGAGATTCTTCAACAGAAGAGTCTGCAGTACTCAGACGGCATAAGCAGGATGGGCAAGCAAGAAAGAATCAGGCCTGGTAGGTGCTGGGCCTACAACACGGTCTTGGGATGAGAGGGCCT-----GGCAGAAGTTACGAGAGGGGAGCCAATTTCACTGGGAGATGAAAAAGC----------------------------------------CCATTTTG--------CCCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGACATCCCGAAGAAGG-------------------ATCCCACAGGAAGGTGGGGCTCAGGTAGGACATG-AGGCTAGAAAGGTGAATCT-GGGTCTAAAGGTGAGAG--AAGCCACAAAAGTGAGTCATTTATCTGAACTAGAAAAGAAGA----AGGGAGTCAAAGATTGGCTATATTGGCTATATTGGTGCTGGCGGGGAGAGGAACACAAAGGAAA-AAGAAAAGTAGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGTAAGGTGATGAGGAGGGAATGGGAGACAGGATGGTGTCTACAGGGACACCGAGGA---AGGGGAAGGGCT--CTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGTAGGAG----GGGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACAAGCTCCACAGAGTAAAGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCACTGTGGGCAGCCAGAGGATGAGCCTGCC----CTCTCACTAACGCAGAGC--------------------------------AAGAGCCAGCTTTGTTATATGGATT--------TATTTTAAATCTAACGCGACCATCCCAATAAAATAGGCATTT--CTCCTCTTACCCTATAGATt-----------------------tttttagagaagctttaaggttcacagtaaatctgagcagaaagtacagggattctccaaatactctctgccccaacacttgtgtgacttcccc-actatcaggatcccgcatgagagtggaacattttt------------------ttatactgacacatcatcaccacccaaagtccatggtttgcatcagagttcactcctggtgtttgttttaccttctatgggtttggaccaaagtataatgacatgtatccacca---------ta-----tacagaata--gtttcactg--ccctaaaaatcctctgttctatgtc---tcttcatcccttcctgcta---aacccctggcaaccactgatcttttttacta-aaataggcattttagtttcccattttatagaaGagaagaggaaacaaagtttcagagatattaaatatctagtccaatgtcacaAAAGTTGTGTGCTCTCGAAT----CCGATTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17201773 1490 - 121039945 AGGGCTGGGGCTGACCATGTCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAAACCTTGTAGAGCAGGTGGAGGATTCCAGAATGA------------------AG--------------------------------------TGAAGATCTA---AAAAT----------------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTAGTTTCAAAGAACAGGTGATTAAGACTTGGACAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGACCAAAGAGATTCTTCAACAGAAGAGTCTGCAGTACTCAGACAGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGGTAGGTGCTGGGCCT---ACACGGTCTTGGGATGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCAATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------CCCA--------------------------------------CAAAAGAG----TTTGGGAATACAGGACATCCCGAAGGAGG-------------------ATCCCACAGGAAGGTGGGGCTCAGGTAGGACATG-AGGCTAGAAAGGTGAATCT-GGGTCTAAAGGTGAGAG--AAGCCATAAAAGCGAGTCATTTATCTGAACTAGAAAAGAAGT----AGGGAGTCAAAGATTGGCTATATTGGCTATATTGGTGCTGGCGGGGAGGGGAACACAAACGAAA-AAGAAAAGTAGAGAGTAAGGAGAACCGCATCAGCCTATAGCCAGTGAATGAAAGAAAGATT--AAATCCCTGTAAGGTGATGAGGAGGGAATGAGAGACAGGATAGTGTCTACAGGG-CACTGAGGA---AGGGGAAGGGCT--CTGTGATATGCACATGGCCATCTCTGGTTGTGAAAGCAGGAG----GGGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACAAGCTCCACACAGTAAGGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCACTGTGGGCAGCCAGAGGACGAGCCTGCC----CTCTCACTAACGCAGAAC--------------------------------AAGAGCCAGCTTTGTTATATGGATT--------TATTTTAAATCTAACGCAACCATCCCAATAAAATAGGCATTT--CTCCTCTTAACCTATGGATt-----------------------tttttagagaagctttaaggttcacagtaaatctgagcagaaagtacagggactctccaaatactctctgcccccacacttgtgtgacttctcc-actatcaggatcccgcatgagagtggaacattttt------------------ttatactgacacatcatcaacatccaaagtccatggtttgtatcagagttcactcttggtgtttgttttaccttctatgggtttggaccaaagtataatgacatgtatccacca---------ta-----tacagaata--gtttcactg--ccctaaaaatcctctgtgctatgtc---tcttcatcccttcctgcta---aacccctggcaaccactgatctttttTACTA-aaataggcattttagtttcccattttatagaagagaagaggaaacaaagtttcagagatattaaatatctagtccaatgtcacaaaatttgtGTGCTCTCGAAT----CTGATTTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106683515 1456 - 170124641 AGGGCTGGGGCTGACCGTGTCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAAACCTGGTAGAGCAAGTGTAGGACTCCAGAACGA------------------AG--------------------------------------TGAAGATCTA---AAAAT----------------------ATGTCTTGAAGCA-GAAGAGATCTgaggcagaaaccagcaaggaggcaaaaacagtactttcaaaggacaggtgattaagacttggataaggctggtggcaatgAGCAGAGAACAGGCCAAGATCAAAGAGATTCTTCAACAG-AGAGTCTGCAGTACTCAGATGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGGTAGGTGCTGGGCCT---ACACAGTCGTGGGATGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCAATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------CCCA--------------------------------------CAAAAGAG----TTTGGGATTACAAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATG-AGGCTAGAAAGGTGAATCT-GGGTCTAAAGATGAAAG--GAGCCACAAAAGTGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGGAGGGGAACGCAAAGGAAA-AAGTC----AGAGAGGAAGGAGAACCACATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAAGCCCTGT-AGGCGATGAGGAGGGAATGGGAGACAGTATGGTGTCAACAGGGGCACTGAGGA---AGGGGAGGGGCT--CTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----GGGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTACACAAGCTCCACACAGTAAGGAAGCAGATAAGGTACAGAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGCCTGCCGCAGCTCTCAATAACGCAGAAC--------------------------------AAGAGCCAGCTTTGTTACATGGATT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTT--CCCCTCTTACCTTATAGATT----------------------Gtttttagagaagctttaaggttcacagtaaatctgagcagaaagtacggggatttcccaaatactctctgcccccacacttgtgtgacttctcc-actatcaggatcccgcatgcgagtggaacatttgt------------------ttatactgacacatcatcaccactcaaagtccatggtttacatcagggttcactcttggtgtttgttttacattctatgggtttgaaccaaagtataatgacatgtatccacca---------ta-----tacagaata--gtttcactg-------------------------------attcatcccttcatgcta---aacccctggcaatcactgatc-tttttactA-aaataggcattttcgtttcccattttatagaagagaagaggaaacaaagtttcagagatattaaatgtctagttctatgtcacaAAAGTTGTGTGCTCTTGAAT----CTGATTTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108417140 1440 - 171882078 AGGGCTGGGGCTGACTGTGTCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAAACCTGGTAGAGCAAGTGTAGGACTCCAGAACGA------------------AG--------------------------------------TGAAGATCTA---AAAAT----------------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAATGAGCAGAGAACAGGCCAAGACCAAAGAGATTCTTCAACAG-AGAGTCTGCAGTCCTCAGATGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGGTAGGTGCTGGGCCT---ACACAGTCGTGGGATGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCAATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------CCCA--------------------------------------CAAAAGAG----TTTGGGATTACAAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATG-AGGCTAGAAAGGTGAATCT-GGGTCTAAAGATGAGAG--GAGCCACAAAAGTGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGGAGGGGAACGCAAAGGAAA-AAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGGGAGACAGGATGGTGTCAACAGGGGCACTGAGGA---AGGGGAGGGGCT--CTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----GGGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTATACAAGCTCCACACAGTAAGGAAGCAGATAAGGTACAGAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGCCTGCC----CTCTCAATAACGCAGAAC--------------------------------AAGAGCCAGCTTTGTTACATGGATT--------TATTTTAAATCTAATGTGACCATCCCAATAAATTAGGCATTT--CCCCTCTTACCTTATAGATT----------------------Gtttttagagaagctttaaggttca-------------cagaaagtacggggatttcccaaatactctctgcccccacacttgtgtgacttctcc-actatcaggatcccgcatgcgagtggaacatttgt------------------ttatactgacacatcatcaccactcaaagtccatggtttacatcagggttcactcttggtgtttgttttacattctatgggtttgaaccaaagtataatgacatatatccacca---------ta-----tacagaata--gtttcactg-------------------------------attcatcccttcatgcta---aacccctggcaatcactgacc-tttttactA-aaataggcattttcgtttcccattttatagaagagaagaggaaacaaagtttcagagatattaaatgtctagtcctatgtcacaAAAGTTGTGTGCTCTTGAAT----CTGATTTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             101546 1448 +    130206 AGGGCTGGGGCTGACCGTGTCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAAACCTGGTAGAGCAAGTGTAGGACTCCAGAACGa------------------ag--------------------------------------taaaaatcta---aaaat----------------------atgtcTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAACAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAATGAGCAGAGAACAGGCCAAGAACAAAGAGATTCTTCAACAG-AGAGTCTGCAGTACTCAGACGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGGTAGGTGCTGGGCCT---ACACGGTCTTGGGATGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCAATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------CCCA--------------------------------------CAAAAGAG----TTTGGGATTACCAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATG-AGGCTAGAAAGGTGAATCTGGGGTCTAAAGATGAGAG--GAGCCACAAAAGTGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGGAGGGGAACGCAAAGGAAA-AAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGGGAGACAGGATGGTGTCAACAGGGGCActgagga---aggggaggggct--CTGTGATATGCATATGGCCATCTCT-GTTGTGAAagcaggag----gggagg---aaggagcaTGTTAAGTAAGTCCTAGAGCATTTACTAAGGTGAGATGACTACACAAGCTCCACACAGTAAGGAAGCAGAGAAGGTACAGAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGCCTGCC----CTCTCAATAACGCAGAAC--------------------------------AAGAGCCAGCTTTGTtacatggatt--------tattttaaatctaatgTGACCATCTCAATAAAATAGGCATTT--CCCCTCTTACCTTATAGATT----------------------GTTTTTAGAGAAGCTTTAAGGTTCACAGTAAATCTGAGCAGAAAGTACAGGGATTTCCCAAATACTCTCTGCCCCCATACTTGTGTGACTTCTCC-ACTATCAGGATCCCGCATGCGAGTGGAACATTTGT------------------TTATACTGACACATCATCACCACCCAAAGTCCATGGTTTACatcagggttcactcttggtgtttgttttacattctatgggtttgaaccaaagtataatgacatgtatccacca---------ta-----tacagaata--gtttcactg-------------------------------attcatcccttcatgcta---aacccctggcaatcactgatc-tttttacta-aaATAGGCATTTTcgtttcccattttat-----agaagaggaaacaaagTTTCAGAGATATTAAATGTCTAGTCCTATGTCACAAAAGTTGTGTGCTCTTGAAT----CTGATTTT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21106276 1453 -  24206276 AGGGCTGGGGCTGACCGTGTCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAAACCTGGCAGAGCAAGTGTAGGACTCCAGAACGA------------------AG--------------------------------------TGAAGATCTA---AAAAT----------------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAATAAGCAGAGAACAGGCCAAGACCAAAGAGATTCTTCAACAG-AGAGTCTGCAGTACTCAGACGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGGAAGGTGCTGGGCCT---ACACAGTCTTGGGATGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCAATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------CCCA--------------------------------------CAAAAGAG----TTTGGGATTACAAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATG-AGGCTAGAAAGGTAAATCT-GGGTCTAAAGATGAGAG--GAGCCACAAAAGTGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGGAGGGGAACGCAAAGTAAA-AAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGAGAGACAGGATGGTGTCAACAGGGGCACTGAGGA---AGGGAAGGGGCT--CTGTGATATGCTTATGGCCATCTCTGGTTGTGAAAGCAGGAG----GGGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTACACAAGCTCCACACAGTAAGGAAGCAGAGAAGGTACAGAAGTTGTGGGTCACTGTGGGTAGCCAGAGGACGAGCCTGCC----CTCTCAAGAACGCAGAAC--------------------------------AAGAGCCAGCTTTGTTACATGGATT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTT--CCCCTCTTACCTTATAGATT----------------------Gtttttagagaagctttaaggttcacagtaaatccgagcagaaagtacagggatttcccaaatactctctgcccccacacttgtgtgacttctcc-actaccaggatcccgcatgcgagtggaacatttgt------------------ttatactgacacatcatcaccacccaaagtccatggtttacatcagggttcactcttggtgtctgttttacattctatgggtttgaaccaaagtataatgacatgtatccacca---------ta-----tacagaata--gtttcactg-------------------------------attcatcccttcatgcta---aacccctggcaatcactgatc-tttttactA-aaataggcattttcgtttctcattttatagaagagaagaggaaacaaagtttcagagatattaaatgtctagtcctgtgtcacaAAAGTTGTGTGCTCTTGAAT----CTGATTTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22241329 1467 + 158406734 AGGGCTGGGGCTGACCATGTCCTTTGCCTCTGAATCTCTTGAACGTGGAACAAAGCCTGGTAGAGCAGGCAGAAGACTCCAGAATGA------------------AG--------------------------------------TAAAGATCTA---AAAAC----------------------ATGTCTTAAAG---AAAGAGATCTAAGGCAGAAACCAGCAAGGAGG-AAAAACAATAGTTTCTAAGGATGGGTGATTAAAACCTGGACAAGTCTGGTGGCAATGAACAGAGAACAGGCCAAG------GAGATTCTTTAAGAGAAGAGTCTGCAGTAATCAGACTGCATTAGCAGGATGGGCAAGCAAAGAAGAATCAGGCCTGGTGGGTGTTGGGCCT---ACACCGTCCTGGGATGAGAGGACCT-----GGCAGAAGTTACAAGC--GGAGCCAATTTCACTGTAAGATGAAAAGGC----------------------------------------CCATTTTG--------TCCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGAAATCCCAAAG--GG-------------------GTCTCACAGGAAGGTGGTGCTCAGGTAGGACATG-AGGCTAGAAAGGTAAATCT-GGGTCTAAAGTTGAGAG--GAGCCACAAAAGTGAGTCATTTAACTGAATTGGAAAAGAAGATAGGAGGGAGTCAAAGATTGACTATATTGGT---------GCTGGCAGGGAAGGGAACAAAAAGGAAA----------AGGGAGGAAGGAGAACTGAATCAGTCTATAACCAATGAATCAAAGCATGATT--AAATCCCTATAAGGTGATGAGGAGGGAATGGGAGACAGGATGGTGTCAAAAGGGGCACTGAGGA---AGG--AGGGGCT--CTGTGATACGCATATGGCCATCTCTAGTCGTGAAAGCAGGAG----GGGAGGAAGGAGGAGCATGTTGAATAAGTCCTAGAACA--TACTAAGGTGGGATGATTGCACAAGCTCCACACAGTAAGGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCATTGTGGGAAACTGGAAGATGAGCCTGCC----CTCTCACTCATGCAGAAG--------------------------------AAGAGCCAGCTTTGTTATATGGATT--------TATTTTAAATCTAATGTGATCATCTCAATAAAACAGGCATTT--ACCATCTTACCCTACAGATt-----------------------tttttagcgaaactttaaggttcacagtaactctgagaagaaagtacagggattttccaaatactctctgctcccacacttgtgtgacttcccc-actatcaggatcctgcatgacagtggaacatttgt----tatcactggtgcagttacactgacacatcaccaccacccaaaa-ccatggtttacatcagggttcactcttggtgtttgttttacattctat-ggtttggaccaaagtataatgacatgtatctacca---------ta-----tacagaata--gtttcaatg--ccctaaaaatcctctgtgctatgcc---tattcatcccttcctccta---aacccttatcgactactgttc-tttttactA-aaataggcattttagtttcccattttat-----agaagaggaaacaaattttcagagatattaaatatctaattcaatctcacaAAAGCTGTGTACTCACAAAT----CAGATTTT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81352584 1416 + 145441459 AGGGTAAGTGCTGA-TATCTTCTTT-CTTCTGAGTCTC-TGACCCCAGAATCAAGCCCAGTACAGCAGGCAGAGGGCTTAACGATGATCTAGGTTTACAGATGGCAG--------------------------------------AAACTATTTATGTAAAATTACC----TAAATTTTCTTTAAATGTTTTGAAGCAGGAAGAGAACTGAGGTAAACACCAA----GAAGCAAAAACAA---TTTAAAAG-----------CAGATCTGAACAAGGTTGGTGGCAATGGTC-----ACAGGTTACAAGGAAAGATATCCTTCAATAG-ACA-TGTGCAGAGGTCAGACTTCCTGAGTGGG------AATCGAGGAAGAGCCAGGC----AAGGCCTGGAGTCT---GAAGAACCCAGTAAAGAAAGTGCTCGGGGAGGCAGCAGCTGCA----------CAGACTCGATGAGA---GAGAAAGA----------------------------------------CTGCTCTG--------CACA--------------------------------------TGGGGCAGTCGATCTGCAGTTACAGGATATATCACAGAATGTCTGCAGTTACAGGATCACATACCACA-GAATATAGGGCCTAGGGAGGACAGGTTAGTTAGACTGGAGAATCT-GGGTCTAAAAACAGTAG--AA-CCAC-AAAATGAAAAAATTGTCTGAGAGAGAAAAGATGACAAGAGGAAGTCAAATGTCG----TATTGAT---------GATGG--------AGAACACAGTTTGGA-CATGCTGTCAGTGAAGTGAGAGGACTGGG-------GGAGCTGGGGCATCAGAGAGACACT--CAGTTTCTG--AGGCGATAAGGAGGG-CTGGGAGGTGGGAAGGTATGACCAAGG-CA-TGAGCA-----------GGCTGGCTGTCCTGTAGCTATGCCAGTCTCAAGT-GTGAAAGCAGGGGACAAGGGAGG---AAAGAGTAGATGATGTAA-TCTTAG----------------------CTACATGAGTTGCTTGAACAAGAGAAACATGGTGGG-GGGGAGGGGGCGGG-------GGGAAGC---------------------GTCTATAAAGCACAGAA---------------------------------------CAGACTAGTCA-ATAAACT----------ATTTAAAAGTGGTGTGGCTGTCCTCAT-----CGGCATTT--CCCCCTTTAAGATACAAATtttttaaaaaatggact--tcagtttcttagagttgatttta-gttcacagtaaaaatgcacaaaaaccaacag---tctccgcatagtgcacccccccaaacacacaagccccctca-actagcaacattctgc-------taaaaactctgtgtgttctggctgatgaccccatgctgata-atccccatctcctcaaa-ccagagtctgcactgggttt---tcttcacgtctgctgcacat--tactgggttagaggaatgagtgatgattttgtaacactg---------caatggtagctgaatgtcatctcacagccccccaaaaatactttgtgctttgcttagtctgtttccct-------------cccctggaaagcactgatcgttttaATTACAGATAT---TTTTGGCTTCCTGTCTTATAGAGGA------GCAATAAAATTTCAAAA------------TAGTTTTATGTCACAAAAATGATGTTCTTTGGAATCATCCTAATAAG
i mm10.chr7                 I 175 C 0
s canFam3.chr3               54410634 1647 +  91889043 agggcaggagctgcctgtgtcttttgcccctgaggcccctgagtccagaacaaaacctggcaTGGCAGGCAGAAGACTCCAAGAGGG------------------AATGAGCTAATAGATGACTGGGGTTTCTGGAAAGTTAATCTGAAGATCCA---ACAATGACAACAGCAAA----------AAGTCTCGAAGCAGGAAGAGATGCGAGGCAG-------------------AACTATAGCTG-AGAGGACAGGTGAGGAGGACCTAGAGGGTCCTAGTGGTGCTGGGCACAGAACAAGCGGAGACCAAGAAGATTCCTTGACAGAGGAAGCTGCACAAGTCAGATGGCCTGGGCCTGGCGGG--AGAATGGAAGAGTCGGGGCTGAGGGGATCCAGGCCT---AGAAGACCCTGGGATGAGCACTGAT-----GGCACTTTTGGAGGGAAGACAGCTCATTTCATGGAAAGATGAACGTGCATTTTTTTCTTCTTCCATGGAACCGCATGAAGAAGTATCACCATCTTGGTCCACACCCCAGGGGCCAGCAAGCTTTCCAAGCTTTTTCCTACACTAAGCACAAGAA----TCTAGGATCATGGAACATCCCCAAGAAAG-------------------GCCCCACAAGAAGGTGAGGCTCCATGAGGATAGG-AGACTACAGAGGTGACTGT-AGGTCCAGAAGTGAGAGCAGAGCCATAGGAGCAAGTGATCTAAGTTGACGAGGAGAGAAGAGAAGAGGGAGTCAGATCCTGGCTGCCCTGGT------------GGCAGGGAGGGGACCCAAGGAGAGAGGAGTC----TGAGAGGAAGGAGAACCAGG-------ACAGTCAGTGCATCAAAGACAGACTGGGAATCACTGCAAGGTGATAAG--GGGAACAGGAAACTGGGAGGTGCCAGCAGGAGCACTGAGGT---AGGCCAGGGG-T--CTGTGGTACGGCCACGGCAGTTGCTCACCATGAATGCAGGGG----ACAGGGACAATGGAACACATTAACCAAGTCCTAAAGGG--TAACAAGGTGGGAGAACTGCATGAGCCCCACACAGTGAGAAAG---GCCAGCTAGCAGTGCCGAGGGTCACTGTGGGCAGCTGGGAGACAAACTCACC----CT-GCACTATGACAGAATGTGAATTAACACCAGGAAGCATCTATAAAATAAAGAGCCAGCTTTGTTACTTGGCTTATTTGTTGTATTTTAAATCCAATGTGACCGTCTCAA----GTAGTTTTTTTCCCCCCTTTACCCTACAGAtt----------ttaactgatttacttcctagagcagttttaa-gctcacagcaaaactgagctcaaagtacaggg---tgccatgttccccctgccccagtgcatgcacggcctcccctactattaacatccc-catcccagtggttcctgtgc----tatgatcactggacctataccaacacatcattaccacctcaagacaatggtttacctcaggctt-aatcttgctgtgtgttgtacattctaagagttct-acaaatgcgtaatgacatgatcccaccactccagcatca-----cacaaagta--gtctcactg--ccctaaaaatcccatgttccacc-----tatgtgtccctccctcctccataatccctggtaaccactgatc-tttttacta-aaataggcatttcaagtccccattttat-----atatgaggaaatgatgtttcagatatattacatatctagtccagtatcacaAAAGTGATATTCTCTGGAAC----CCATtttt
i canFam3.chr3              I 21 I 146

a score=2529302.000000
s hg38.chr15_KI270850v1_alt    340821 747 +    430880 ------------------------------------------ACCACCGCACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctcaaacactacccactagaaccacctggggatctttattcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGA-CCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAAGCGTAGGAAGAGAGAATCTTAT-GGGGAAAACCCACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGACCCACAGGTGGGTGTGGGCTAAAGAG-GAATTCACCC-CCACAGACTGGGAGGTCACAAGGCACAGGAAGGGCAGGACCAGGGAAAAACAGCTGTAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTGCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGAAACCAAAGTGTTGGCTACAAGAAAGAAGAGCAGAATAAAGACGGGCAGACAGTTTGA-TTACCATGGGCAGGCATGCGCATGTGTGCATGCACA-------CAC--CCCATTAAGTCCCAAAGGTTGCTTTTTTTTTTTTTT-------AATGTAATTGAGAGGATACT-GCTAT-TTTATTGTGGGACAAGAAG------------------------------------AGCCTTCTTGCCTCAGCAGGAATACTCCTTGCCTGCAGCCTGCCTATCCACCTACCACAAGAAAATCCAGTGCCTCAATATTCCAAGACCCTCGATCCAGAAAGGA
s panTro4.chr15              80122432 749 +  99548318 ------------------------------------------ACCACCGCACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctcaaacactacccactagaaccacctggggatctttattcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGA-CCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAAGCGTAGGAAGAGAGAATCTTGT-GGGGAAAACCCACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGACCCACAGGTGGGTGTGGGCTAAAGAG-GAATTCACCC-CCACAGACTGGGAGGTCACAAGGCACAGGAAGGGCAGGACCAGGGAAAAACAGCTGTAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTGCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGAAACCAAAGTGTTGGCTACAAGAAAGAAGAGCAGAATAAAGACGGGCAGACCATTTGA-TTACCATGAGCAGGCATGCGCATGTGTGCATGCACA-------CAC--CCCATTAAGTCCCAAAGGTTGCTTTTTTTTTTTTTT-----TTAATGTAATTGAGAGGATACT-GCTAT-TTTATTGTGGGACAAGAAG------------------------------------AGCCTTCTTGCCTCAGCAGGAATACTCCTTGCCTGCAGCCTGCCTATCCACCTACCACAAGAAAATCCAGTGCCTCAATATTCCAAGACCCTCGATCCAGAAAGGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10130864 754 +  10928107 ------------------------------------------ACCACCACACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctcaaacactatccactagaaccacctggggatctttgttcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggtcca--------------agactgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGA-CCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGGCGTAGGAAGAGAGAATCTTAT-GGGGAAAACCCACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGACCCACAGGTGGGTGTGGGCTAAAGAG-GAATTCACCC-CCACAGACTGGGAGGTCACAAGGCACAGGAAGGGCAGGACCAGGGAAAAACAGCTATAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTTCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGAAACCAAAGTGTTGGCTACAAGAAAGAAGAGTAGAATAAAGACAGGGAGACAGTTTGA-TTACCATGGGCAGGCATGCGCATGTGTGCATGCACA-------CAC--CCCATTAAGGCCCAAAGGTTGCTTTTTTCTTTTTTTTTTTTTTAATGTAATTGAGGGGATACT-GCTAT-TTTATTGTGGAACAAGAAG------------------------------------AGCCTTCTTGCCTCAGCAGGAATACTCCTTGCCTGCAGCCTGCCTATCCACCTACCACAAGAAAATCCAGTGCCTCAATATTCCAAGAACCTCGATCCAGAAAGGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17203263 749 - 121039945 ------------------------------------------ACCACCACACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctcaaacactatccactagaaccacttggggatctttgttcagttggagattcctaaattccaccta-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatgccc--aggtgaGATAAACTC---GTTAGAGA-CCCATGCTGCCAAGGATA----CATAACGCTGATATTAGAAAAGGCATAGGAAGAGAGAATCTTTT-GGGGAAAACCCACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGACCCACAGGTGGGTGTGGGCTAAAGAG-GAATTCACCC-CTACAGACTGGGAGGTCACAAGGCACAGGAAGGGCAGGCCCAGGGAAAAACAGCTGTAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTGCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGAAACCAAAGTGTTGGCTACAAGAAAGAAGAGTAGAATAAAGACTGGGAGACAGTTTGA-TTACCATGGGCAGGCATGCGCATGTGTGCATGCACA-------CAC--CCCATTAAGGCCCAAAGGTTGCtttttttttttttt-----tttATGTAATTGAGAGGATACT-GCTAT-TTTATTGTGGGACAAGAAA------------------------------------AGCCTTCTTGCCTCAGCAGGAATACTCCTTGCCTGCAGCCTGCCTATCCACCTACCCCAAGAAAATCCAGTGCCTCAATATTCCAAGAACCTCGATCCAGAAAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106684971 747 - 170124641 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctcaaacactatccactagatccacttggggatctttgttcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgagcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGA-CCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGACGTAGGAAGAGAGAATCTCAT-GGGGAAAACCCACAAAACTAAATAAAGCCCCGAATGAGAATGAAGAAGTGACCCACAGGTGGATGTGGGCTAAAGAG-GAATTCACCC-CCACAGACTGGGAGGTAAGAAGGCACAGGAAGGGCAGGACCAGGGAAAAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCAATTCTAAGACAAGAGGTTTAAAACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGACAGTTTGA-TTACCATGGGCAGGCACGCGCATGTGTGCATGCACA-------TAC--CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTTTTT-------TATATAATTGAGAGGATACT-GCTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTCAGCAGGAATACTCCTTGCCTGCAGCCTACCTATCCACCTACCCCAAGAAAATCCAGTGCCTCAATACGCCAAGAACCTTGATCTAGAAAGGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108418580 747 - 171882078 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctcaaacactatccactagatccacttggggatctttgttcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgagcaatgagatcccc--aggtgaAATAAACTC---GTTAGAGA-CCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGACGTAGGAAGAGAGAATCTTAT-GGGGAAAACCCACAAAACTAAATAAAGCCCCGAATGAGAATGAAGAAGTGACCCACAGGTGGATGTGGGCTAAAGAG-GAATTCACCC-TCACAGACTGGGAGGTAAGAAGGCACAGGAAGGGCAGGACCAGGGAAAAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCAATTATAAGACAAGAGGTTTAAAACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGACAGTTTGA-TTACcatgggcatgcacatgcatgtgtgcatgcaca-------tAC--CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTTTTT-------TATATAATTGAGAGGATACT-GCTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTCAGCAGGAATACTCCTTGCCTGCAGCCTACCTATCCACCTACCCCAAGAAAATCCAGTGCCTCAATATGCCAAGAACCTTGATCTAGAAAGGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             102994 747 +    130206 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAAGTGATTCTCAAACACTATCCACTAGATCCACTTGGGGATCTTTGTTCAGTTGGAGATTCCTAAATTCCACCCA-GagtgattcagtaagtctgggatAAGGCCCA--------------AGAATGTGCAATGAGATCCCC--AGGTGAGATAAACTC---GTTAGAGA-CCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGATGTAGGAAGAGAGAATCTTAT-GGGGAAAACCCACAAAACTAAATAAAGCCCCGAATGAGAATGAAGAAGTGACCCACAGGTGGATGTGGGCTAAAGAG-GAATTCACCC-CCACAGACTGGGAGGTAAGAAGGCACAGGAAGGGCAGGACCAGGGAAAAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAAAGAAGTCTGCTGTTCTCAATTTCAATTCTAAGACAAGAGGTTTAAAACTAAAATGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGACAGTTTGA-TTACCATGGGCAGGCACgcgcatgtgtgcatgcaca-------tac--cCCATTAAGGCCCAAaggttgctttcttttcttttt-------tatgtaattGAGAGGATACT-GCTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTCAGCAGGAATACTCCTTGCCTGCAGCCTGCCTATCCACCTACCCCAAGAAAATCCAGTGCCTCAATATGCCACGAACCTTGATCTAGAAAGGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21107729 748 -  24206276 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctcaaacactatccattagatccacctggggatctttgttcagttggagattcttaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGA-CCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGATGTAGGAAAAGAGAATCTTATGGGGGAAAACCCACAAAACTAAATAAAGCCCCGAATGAGAAGGAAGAAGTGACCCACAGGTGGGTGTGGGCTAAAGAG-CAATTCACCC-CCACAGACTGGGAGGTAAGAAGGGACAGGAAGGGCAGGACCAGGGAAAAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCAATTCTAAGACAAGAGGTTTAAAACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGACAGTTTGA-TTACCATGGGCAGGCATGCGCAGGTGTGCATGCACA-------TAC--CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTCTTT-------TATGTAATTGAGAGGATACT-GCTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTCAGCAGGAATACTCCTTGCCTGCAGCCTGCCTATCCACCTACCCCAAGAAAATCCAGTGCCTCAATATGCCAAGAACCTTGATCTAGAAAGGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22242796 736 + 158406734 ------------------------------------------ACCACCACACTGATTCCTGAGTTCAAAACTTGCTTTGACAagtggtttttaaacaccatccactaaaaccactaggggatctttgttcagttggagattcctaaattcccccca-gaatgattcagtaaatctggaataaggccca--------------agaatctgcaatgagatcccc--aggtgaGATAAACTCCATGTTAGAGA-CCCATGATGTCAAGGACA----CACAAGGCTGATATTAGAAAAGGCACAGGGAGAGAAAATCTTAT-GGGGAATAACCACAAAACTGAATAAAGCCCTGAATGAGAATGAAG-AGTGACCCACAGGTGGATATGGGCTGAAGAG-AAATTCATCC-CCACAGACTAGGAAGTCAGAAGTCACAGAAAGGGCAGAACCAGGGAAAAACAGCTGTAGG--TTTATCAGTTAAAT-CAAGTAGAGAAGTTTGCTATTCTCAATTTCATTTCTAAGACAAAAGGTTTAAAACCAAAGTGTTGGCTACAAGA---AAGAGCAGAATGAAGGCTGGGAGACAGTTTGA-TCACTGTGGGCAGGCACACGCATGTGTGCATGTACA-------CACAACCCGTTAAGGCTCAAAGGTT---------TCTTATT-------TATGTAATTGAGAGGATATT-GCTATATTTATTGTGGGACAATAAA------------------------------------AGCCTTCTTGCCTCAGCAGGAATA---TTTGTCTGCAGCCTGCCTAGCCACCTACCCCAAGAAAATCCAGTGCCTCAATATGCCAAGAACCTTGATCCAGAAAGGA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81354000 686 + 145441459 ------------------------------------------AATACTGTACCAATTTCTAAACTCAAAGC-----------AACGGTTCTCAAAC-----------TATCCAGTTGAGAAGCCTGATTAAA--AGAGATTCCTAAACTCCCCACACAAATGATTCAGTAA------------GCCTA--------------AAAATCTGCAGTGAGGTCCCCCAATGTGAAATCAATGT-----------------GCTATCCAGGACA----CACCA-GCTTCTGTCA-AGAACGTTTAGAGAG---GTATCATAC-TGACAGAGCTC-TGAAACTAAGCAAGGCCCAGGA-GAGAGCGAAGCAG----CCACGGCAGGGTGGGTGCTAAGGAGTTTATGCACCA-TCATACACTATAGGGTCAGAAAGCACAGTCTG---AGAACTAGGGGGAAATATCTGTAGGGTTTTATCAGTTTAGTACAAGCAGAGAAAGCTGCTGCTTTCAATTTCATCTCTAAGAT--GAGATTTGGGGTTTAAGTGTAGATC-------AGAAAAGAACAGAAAGGGCTGGGAAG--GCTCAACTCCCCACTGGC-TCCAGGACTGTGTGTGCACACACCTCCCTTTTAT--CTCACTAAGTCTCAATAGCTGCATT----TTTTTTT-------AATGCAATCTAGAAAATAGTGGATGTACTTACTGTGGaacaaaaaatcaaaacacaacaaaacaaacaaacaaaaaaaaacCAGATTTCTTGCCTCAGCAAGAA----------CTGGTGC------------------CAAGAAAATCTAGTGCCATGATATGCCAAA------TATCAAGAAAGGA
i mm10.chr7                 C 0 I 1173
s canFam3.chr3               54412427 679 +  91889043 accactgagccacccaggcgtcccATGAACCTGATTTTTAAAAAAACAATACTGATTCCTGAGTGCAAAACTTAA-CTGACAagtggttctcaaacatcatccatgagaaccatttgg----------------ggagattcttaaGTTCCTCCCA--AACGGACCAGTAACTCTGAGACAGGACCCAGCAGCAGCCTTGACAGCACCAGCAGTGAGGGTCGC--AGGTGCAGGAACTGT---GCTAGAGATCCCATACT---AAGGGCACGGTCACAAGGCCAGTGGTGGAAAAGGCTTAAGGAGAGAGAAACATGA-AGG---AACACACAA---TAGACAAA-CCCTGAGTGGGAGTGAAGAGGTGATCCATGGATGG-TGTGGTCTAAGGAG-GAAGTTGCCCACCACAGACT-GGAGGTCAGAAGGC-----------AGGACCAGAAAGAAACAGCTGCAGA---TTATCAGTTAATTCAAAGGACAGAAAGATGCTGTTTTCAATTTCATTTCTAAGACCAGAGGTTTTTGACAGAAGTGTTGGCT---------------AGAATAAGGGCTGG--AACAGTCTTC-TCTCCA--GACAGAAACA--------------CACA-------CAT--ACTAGTAAGGTCCAAAGGTT-------TGTTTTTCT-------ACTGTCA--AAGAGCATTTT-GTCGTCCTTACTGGAAAACAGGAAG---------------------------------AGCAGCCTTCTTGCCTCACT---------------CCGCAGCCTGTGTATGCACCCACCC-----------------------------------TGACCCAGAGAGGA
i canFam3.chr3              I 146 C 0

a score=4500.000000
s hg38.chr15_KI270850v1_alt    341568 1 +    430880 C
s panTro4.chr15              80123181 1 +  99548318 C
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10131618 1 +  10928107 C
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17204012 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106685718 1 - 170124641 C
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108419327 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             103741 1 +    130206 C
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21108477 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22243532 1 + 158406734 C
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54413106 1 +  91889043 C
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81354686 1173 + 145441459 I

a score=6702149.000000
s hg38.chr15_KI270850v1_alt    341569 1619 +    430880 ATCACGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAGG-AAAAATCGCATTAATATCCCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGCGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTACTCCTG-----------------AA--AAGTCGTGTTGAGTGGAAGCATTTGCTATG-C------AGAT-----GCCCTGGGTTGTGGG-----CCTCCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTACC--A-CAGCT-CTCTATGCAAGAACACAGAGCATGTTCAGGTCAGCAGAGCCAG--------GCTTTCCTGGTGGCAGG-----AAAGATGGCAGGTATTGCTTTAAACACCTACTTAAACCATTAGTTC-AGTTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGGACATGTTAGGTTGAAGAGA-AAGTGCTGACAGATGGCAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGTACTAGGGAAGGGAAAAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGATGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCTTTCCCAGTAAAGACACAAACACAGAATCACCAGCATTCTCCTCCC-TGGCTCATCCCCACTGACAAACAACTCAGAAACGAATGCTGATCTCC-------GGTGTAAGCTCCCG-ACATAAGGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA-----CCCTGAG--CTCAGGCAGGGCATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATGCCCCACCCTTCAACTCTTAAAGC---AGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGATAAACAGGGGA-GGTTAGAGAATCAACAAAGCCA-CACTCTTCCCTGGGGTGAACTTGTCCAGTA---AGAACCTG
s panTro4.chr15              80123182 1618 +  99548318 ATCACGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAGG-AAAAATCGCATTAATATCCCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGCGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTACTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATG-C------AGAT-----GCCCTGGGTTGTGGG-----CCTCCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTACC--A-CAGCT-CTCTATGCAAGAACACAGAGCATGTTCAGGTCAGCAGAGCCAG--------GCTTTCCTGGGGGCAGG-----AAGGATGGCAGGTATTGCTTTAAACACCTACTTAAACCATTAGTTC-AGTTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCCGGCAAGGGAAAGCTTTTCA----AATGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGGACATGTTAGGTTGAAGAGA-AAGTGCTGACAGATGGCAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGTACTAGGGAAGGGAAAAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGATGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCTTTCCCAGTAAAGACACAAACACAGAATCACCAGCATTCTCCTCCC-TGGCTCATCCCCACTGACAAACAACTCAGAAACGAATGCTGATCTCC-------GGTGTAAGCTCCCG-ACATA-GGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA-----CCCTGAG--CTCAGGCAGGGCATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATGCCCCACCCTTCAACTCTTAAAGC---AGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGATAAACAGGGGA-GGTTAGAGAATCAACAAAGCCA-CACTCTTCCCTGGGGTGAACTTGTCCAGTA---AGAACCTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10131619 1618 +  10928107 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAGG-AAAAATCGCATTAATATCCCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGTGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTACTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGTGTTTGCTATG-C------AGAT-----GCCCTGGGTTGTGGG-----CCTCCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTACC--A-AAGCT-CTCTATGCAAGAACACAGAGCATGTTCAGGTCAGCAGAGCCAG--------GCTTTCCTGGGGGCAGG-----AAGGATGGCAGGTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AGTTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGGCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AATGCCTTATTTTGAGAGGAAAGGT-GCTGCCTGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGGAAGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTACCAACATGCAGCTGTGATATCCCAGCACCCCTAGGTGCAGTTATGTACTAGGGAAGGGAAAAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGATGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAATCATCTTTCCCAGGAAAGACACAAACACAGAAGCACCAGCATTCTCCTCCC-TGGCTCATCCCCACTGACAAACAACTCAGAAATGAATGCTGATCTCC-------GGTGTAAGCTCCCA-ACACA-GGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTTGGA------------------------------------------CACTCATGTAATA-----CCCTGAG--CTCAGGCAGGGGATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATGCCCCACCCTTCGACTCTTAAAGC---AGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGATAAACAGGGGA-GGTTAGAGAATCAACAAAGCCA-CACTCTTCCCTGGGGTGAACTTGTCCAGTA---AGAACCTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17204013 1657 - 121039945 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAGG-AAAACTCACATTAATATCCCTTAGGTGGCCAATCCTCAGCCTTG--------------------GCTTTGCAGCAGGGCGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTACTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATG-C------AGAT-----GCCCCGGGTTGTGGG-----CCTCCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTACC--A-CAGCT-CTCTATGCAAGAACACAGA----GTTCAGGTCAGCAGAGCCAG--------GCTTTCCTGGGGGCAGG-----AAGGATGGCAGGTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AGTTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGAT-GCTGCTTGGGTTCAGGTTTAG-TAGAAGTGTACAAGGAAG-----------GCGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGGA--TGTTAGGTTGAGGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGTACTAGGGAAGGGAAAAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCTTTCCCAGTAAAAACACAAACACAGAATCACCAGCATTCTCCTCCC-TGGCTCATCCCCACTGACAAACAACTCAAAAATGAATGCTGATCTCC-------GGTGTAAGCTCCCG-ACATA-GGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTCAGGGAGTGTCTGAGGGGAGTGTCTGAGTGACACTCATGAGGATATTACTCATGTAATT-----CCCTGAG--CTCAGGCGGGGGATTCAGCCCCTGGCTTCAATTCCAAGTTTCATGCTCCTGAAAGACATGCCCCACCCTTCAACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAAGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGATAAACAGGGGA-GGTTAGAGAATCAACAAAGCCACCGCTCTTCCCCAGGGTGAACTTGTCCAGTA---AGAACCTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106685719 1620 - 170124641 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAGG-AAAAATCACATTAATATCCCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTACTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATG-C------AGAT-----GCCCAGGGTTGTTGG-----CCTCCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTACC--A-CAGCT-CTCTATGCCAGAACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GCTTTCCTGGGGGCAGG-----AAGGATGGCAGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AGTTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACACCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAGAAGTGTAC----AAG-----------GGGTTTCAGA-GGCAGCT-CCTACTGCTGTGTAAGTCTGGACAGATGCAACATTAGCTCCGAAGAAATAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGTTCTAGGGAAGGGAAAAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTCTCCTCCC-TGGCTCATCCCCACTGACTGACAACTCAGAAATGGATGCTGATCTCC-------GGTGTAAGCTCCCG-ACATA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA----CCCCTGAA--CTCAGGCAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATGCCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGATAAACAGGGGA-GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCTGGGGTGAGCTTGTCCAGTA---AGAACCTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108419328 1624 - 171882078 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAGG-AAAAATCACATTAATATCCCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTACTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATG-C------AGAT-----GCCCAGGGTTGTTGG-----CCTCCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTACC--A-CAGCT-CTCTATGCCAGAACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GCTTTCCTGGGGGCAGG-----AAGGATGGCAGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AGTTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGCAACATTAGCTCCGAAGAAATAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGTTCTAGGGAAGGGAAAAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTCTCCTCCC-TGGCTCATCCCCACTGACTGACAACTCAGAAATGGATGCTGATCTCC-------GGTGTAAGCTCCCG-ACATA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA----CCCCTGAA--CTCAGGCAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATGCCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGATAAACAGGGGA-GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCTGGGGTGAGCTTGTCCAGTA---AGAACCTG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             103742 1624 +    130206 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAGG-AAAAATCGCATTAATATCCCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATaagatacatttttg---------------------------ttttactccTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATG-C------AGAT-----GCCCAGGGTTGTTgg-----cctccctcccaccct-ggtGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTACC--A-CAGCT-CTCTATGCCAGAACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GCTTTCCTGGGGGCAGG-----AAGGATGGCAGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AGTTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATCAAATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCCGAAGAAACAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGTTctagggaagggaaaaaaaagctccTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCtgcaaagagacagaaaacaatggCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTCTCCTCCC-TGGCTCATCCCCACTGACAAACAACTCAGAAATGGATGCTGATCTCC-------GGTGTAAGCTCCCG-ACATA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA----CCCCTGAA--CTCAGGCAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATGCCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGACGGCAAAGAGATAAACAGGGGA-GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCTGGGGTGAACTTGTCCAGTA---AGAACCTG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21108478 1625 -  24206276 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAGG-AAAAATCGCATTAATATCCCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTACTCCTG-----------------AG--AAGTCTTGTTGAGTGGAAGCATTTGCTATG-C------AGAT-----GCCCAGGGTTGTTGG-----CCTCCCTCCCACCCT-GGTGAAGGAAAGGACTAGGCAAGCTGAGACAGAGAGATCCCACC-ATTACC--A-CAGCT-CTCTATGCCAGAACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GCTTTCCTGGGGGCAGG-----AAGGATGGCAGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AGTTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTCGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCCGAAGAAATAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCCGACAGATGACAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGTTCTAGGGAAGGGAAAAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTCTCCTCCC-TGGCTCATCCCCACTGACAAACAACTCAGAAATGGATGCTGATCTCC-------GGTGTAAGCTCCTG-ACATA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA----CCCCTAAA--CTCAGGTAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTCAAAGACATGCCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGATACATCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGCAGACGGCAAAGAGATAAACAGGGGA-GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCTGGGGTGAACTTGTCCAGTA---AGAACCTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22243533 1624 + 158406734 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCTGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCTAGTTCGAACACCAGATACACATACCCTATTCCCAATGAGAGGAAAAAATCACATTACTATC----------CCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCCTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTACTCCTG-----------------AA--AAGTCTTGTTGAGTCGAAGCATTTGCTGTG-C------AGAT-----GCCCAGGGTTGTGGG-----CATCCCTCCCACCCTGGGTAAAGGAAAGGATT-GGCAAGCTGGGACAGAG-GATCCCACC-ATTACC--A-CAGCTACTCTCTCCCAGAATACACAGCATGTTCAGGTCAGCAGAGCCAA--------GCCTTCCTGGGGGCAGG-----AAGGATGGCAGGTATTGCTTTAAACACCTACTTAAACCACTGGTTC-AGTTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGATCCTCATTCCTGCCAACTCCAAAGGGACT-TCAGAATTAGGTCAGGCAACAATGTAACTGGGCAGGACAGGCAGTCAAGGGAAAGCTTTTCA----AATGCCTTATTTTGAGAGGAAAGGT-GCTGCTAGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCATTGCTGTGTAAGTCTGGACAGACGGAACATTAGTTCAGAAGAAACAGA-GGACTTGTTAGGTTGAAGA-A-AAGAGCTGACAGCTGACAGGTCTGTGCCCTGGAGTGCCC--ACCATGTTGCCAGCATGCAGCTGTGATATCCCAGCACCCCTAGGTGCAGTTATGTACTAGGGAAGGGAAAAAAAAGCTCCTACCATGTTTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGACAAACCATCCTCCCCAGTAAAGACACAAACACAGAATCACCAGCATTCTCCTTCC-TGGCACATCTCCCATGACAGACAACTCAGAAATGAATGCTCATCTCCAGTGACAAGTGTAAGCTCCAG-AGA---GGAGCA---CTATGGGGATCTATGAAATACAC-CTCTC---AC-CTCAGA------------------------------------------CGCTCATGTAATAATGTACTCTGAGTTCTCAGTCAGAG-ATTCAGCCCCTGGCCTC-ATTCCAAGTTTCATGCTCCTGAAAGACATGCCCCACCCTTCAACTCTTGAAGCAGAAAGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTACATTCACAGCTTTGGTAAAAGACAAAGAGGGAAACAGGGAAGGGTTAGAGAATCAACAAAGTCACCATCATTCCCTAAGGTGAACTTGTCCAGCA---AGAACCTG
i calJac3.chr6              C 0 I 306
s mm10.chr7                  81355859 1653 + 145441459 ACCAAGCTAACTCACCTCTTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAACAAGCCTGAAGCAAGGCCCGGACGGACTTCTCTAGTTCAAACACCAAATACACATACCCTATACTCAATGAAAGG-AAAAGAAGCCTTACTATCCCTCAGG-GGCAACTTAACATCCTCGTGTGTGGCTGAGGAGCCAAAGCTTTG-AGCAGGGAGTTTCTTCCATGGGGAGAAACATCAAGTGCAAGGCACTGCTTTGGAGGGTGGGTGCTGGGGACCCCACAGTCTCCACCACTGAATCCAATCCCTTACCCAA--AAGGCTTGTC-----AGACCCTTTACTGTG-CCTTATGCTAT-----GCTAAGGGAGAGAGA-----TTTATATCAAATTTC-ATTAAGGGAAGGTACT-GTTAAGCTGGGACAGAA-GACCCCACCTATGACCATA-TAGCT-GTCTACCCCAGAACACAGAGTATGCCCAGGTCAACAGAGTCAGGAAAAATAGCAGGTTTATGGTCAGTTTGCCAGGGGATGCAGGTACTGCTTTAAAAGCCTAACTAAGCCACTGGTTCAAGTTCA--------------GTGAAGATGGGGCAGAGTGAAAATAGCACCTGCTTCTTTCTACAGGGCA-GGATCTCATTTTAGACCAGTGAGGAATCAGATACTTGGTCCACATTCCTGCCAACTGCAAAGGGAATCTCAGAACTGGGTCACACAACAAC-CCCTGGGGCAGCAGAGGCAGGCAAAAGAACACTTCTGAAGTGAACACCTTA-TTCAAGAGGGAAGGC-ACCGGTGGGGTTTAGGTTCAGAGGGAGGTGCTC-AGGAAG-----------GGG--TCAGATGGTATCTCCCCACATCACTGCAGATTTGGACAGATGG------------------ACAAAGGGGTGTGCAAAACAGAAGAGG-GTGTGTTGA------------CTTTACCCTGGAGTGCCT--ACT---TTACCAGCATGCGTCTGTGACAGCCCAGCAACACATGGTGCAG-TACATGTGAGGGAGAGGAAAAAAAGTTTCCTACCACGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAGAGAGCCAAAAACACGGAAGGTGTTAACCAATCCAGCTGCAC--AGGTGGGGAAGAACAACAGAAACCAATACACAGTC-TACTCAGGAAAGAC----AAACAGAATCA-CAGTA--CTCCTCCCAAGGCTCACTGCTCCTGAAAAACAACTCAGAACTGACTGCTGCTCTCC-------TACGTAAGC------ACACACAGCGCT---CTACAGAGGCTTATGAAATGCACACTCACGCTCT-CTCAGC------------------------------------------TGCTC-TGTAACA-----CCCTGGG--CTGAGGCAGAG-GTTCAGGCTCTAAACTGGACGCTAGGGTTTACACTCTTGAAAGATATGCTCCA-CCTTCAACTCATAAG-----AGATTTCAGAGGCAGCTCACCTTCTGTAATATCCCAAGGAACGCCTCCTAGGAACACCTTGCATGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACACGTAGCTTCATTCACAGCTGTAGGAGAAAACAAAGCAAAACCCAAGG---GTTCAGACAATCAACAAAGTCACTACCCTCCTCTGAAATGGACTTGTTGGGGAAATAGAACATT
i mm10.chr7                 I 1173 I 5
s canFam3.chr3               54413107 1607 +  91889043 ACTGTGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCCCGGACAGACTTCTCTAGTTCAAAGACCAGATACACATACCCTATTTCCAATAAAAGG-AGAAGCTGCATTAACATCCCTGAGGTGGTCACTCTTCAGCTTTG--------------------GTTTTGCAGTAGGGTATTTCTTCCAGGAGAAATGGCCTCATGTCTAAGATACATTTTTG---------------------------TCCTACTTCTG-----------------GAACAAGGTCTTTCAAATGGGCGCCCTTGATGTGTC------AGATGTCAGGCCAAGGGAGGGAGAAGCACACCATCTCCCACCCA-AGTGA-GGAAGGGACG-AGCAAAGTGGGACACAG-GATCCCATC-ATAAGC--ACCAGCA-TTCTATCCCAAAACACACAGCATGTTCTGGTCAGCAGAGCCAG--------GCTGTCCTG-GGGCAGG-----GAGG--------TATTGCTTTAAAAGCCTAGTTAGACCACTGGTTC-AGTTCATCAGAACATTTCTGGTGAAGATGGGGCAGAGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATCAGATGCTTGGTCCTCATTCCTACCAACTCCAAAGGGATC-TCAGAATTAGGTCAGACAACAATGTAACCGGGCAAGAAAGGCAGGCAAAGGAAAGCTTTTCA----AATGCCTCATTTTGAGAGGAAAAGTAGCTGCTGGGGTTCAGGTTTGGAGGGAAATGCACAAGGAATTTTCACACAGCAAGATTCATA-GGTGGCT-CTGACTGCAATGTAAGTTTGAACAGATGGAACTTTAGCTCAGAAGCAGCAGAAGGATGTGCTAGGTTGGAGAGAGAAGTGCCGACAGCTGAAAGTTCTGTGCTCTGGAGTGCCCAAACCAGGTTACCAGCATGCAGCTGGGACATCCCAGCATCCCTCAGTGCAATTACATACTAGGGAGGGGAAAAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACAGAAGGTGTTAACCAATCCAACTGCAGAGAGATGGAAAAGAATGGCAGAAACTGATGGACCTCCATCCCCAG-GAAGGCACAAGCACAGGACCACCAGTGTCCTTCTCCC----------------------AAACTCAGAATTGACCTTGGGTCCCAGGTGACAAGTGTAAGCACCAGAAAACA-GAAGCAATGATATGGGTGTCTACAGAATGTAC-CCCGC---CCTCTCACT------------------------------------------GACTCCTGCAAAG-----CCCTGTG--CTTGGGCACAG-CTTCAG-CCCTGGCCTTAAGTCCAAGTTTAATGCTCTTGAGAGACATGCCCCA-CCTTCAGTGCTC-AAGCAGTAGGTCTCAGAGGCAGCTCACCTTCCGTAATATCCCAGGGAACACCTCCCAGGAACACCTTGCAAGAGTAGATGGGGTTCTTGTAGTTCCGCGGTGGAAGCTGGCCACTCCAGGTATAGGTGGCTTCATTCACAGCTTTGG-AGACGACAAAGAGAGAAATG------GGTCAGA----------------------------GGATGAACTTATCCAGGA---AAAACTAG
i canFam3.chr3              C 0 C 0

a score=1940505.000000
s hg38.chr15_KI270850v1_alt    343188 517 +    430880 ACTGGCCACAATCCTT-GCCCAGATGCCTGAGAGAATATCCATGATTATTCTGAAAAGCAAGAAAT-C-TATGTCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGT----AAAAATTTACACCCCATGTTATTTTCAAACATTCAACTAATATGCTAAC----------------CACAAAGCAGTTTTATCCTGTTATTGCTTACAG---TACT--AATTCA------TAATTACTTGAAAATAAACATAGCA-------ATACAACATCTTGCAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCTTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCAGCACTGGCAACCCAGTAAGACAAGAATGTCACAACTGTTCCA---------AGCC---A-GACTCATC-----------TTTATAGCACCCAAATAGACAATGGGCCTTCCTTGATGCCAGCAT
s panTro4.chr15              80124800 517 +  99548318 ACTGGCCACAATCCTT-GCCCAGATGCCTGAGAGAATATCCATGATTATTCTGAAAAGCAAGAAAT-C-TATGTCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGT----AAAAATTTACACCCCATGTTATTTTCAAACATTCAACTAATATGCTAAC----------------CACAAAGCAGTTTTATCCTGTTATTGCTTACAG---TACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTGCAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCTTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCAGCACTGGCAACCCAGTAAGACAAGAATGTCACAACTGTTCCA---------AGCC---A-GACTCATC-----------TTTATAGCACCCAAATAGACAATGGGCCTTCCTTGATGCCAGCAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10133237 517 +  10928107 ACTGGCCACAATCCTT-GCCCAGATGCCTGAGAGAATATCCATGATTATTCTGAAAAGCAAGAAAC-C-TATGTCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGT----AAAAATTTACACCCCATGTTATTTTCAAACATTCAACTAATATGCTAAC----------------CACAAAGCAGTTTTATCTTGTTATTGCTTACAG---TACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGAGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCAGCACTAGCAACCCAGTAAGACAAGAATGTCACAACTGTTCCA---------AGCC---A-GACTCATC-----------TTTATAGCACCCAAACAGACAATGGGCCTTCCTTGATGCCAACAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17205670 517 - 121039945 ACTGGCCACAGTCCTT-GCCCAGATGCCTGAGAGAATATCCATGATTATTCTGAAAAGCAAGAAAC-C-TATGTCTCACCAATCTACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGT----AAAAATTTACACCCCATGTTATTTTCAAACATTCAACTAATATGCTAAC----------------CACAAAGCAGTTTTATCTTGTTATTGCTTACAG---CACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCTCTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCAGCACTGGCAACCCAGTAAGACAAGAATGTCACAACTGTTCCA---------AGCC---A-GACTCATC-----------TTTATAGCACCCAAATAGACAATGGGCCTTCCTTGATGCCAACAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106687339 517 - 170124641 ACTGGCCACAATCCTT-GCCCAGATGCCTGAGAGAATATCCATGATTATTCCGAAAAGCAAGAAAC-C-TATGTCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAGCCAGATG-----TGTAGGGT----AAAAATTTACACCCCATGTTATTTTCAAACATTCAACTAATATGCTAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATAGAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCAGCACTAGCAACCCAGTAAGACAAGAATGTCACAACTGTTCCA---------AGCC---A-GACTCATC-----------TTTATAGCACCCAAATGGACAATGGGCCTTCCTTGATGTCAACAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108420952 517 - 171882078 ACTGGCCACAATCCCT-GCCCAGATGCCTGAGAGAATATCCATGATTATTCCGAAAAGCAAGAAAC-C-TATGTCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAGCCAGATG-----TGTAGGGT----AAAAATTTACACCCCATGTTATTTTCAAACATTCAACTAATATGCTAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATAGAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATTAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCAGCACTAGCAACCCAGTAAGACAAGAATGTCACAACTGTTCCA---------AGCC---A-GACTCATC-----------TTTATAGCACCCAAATGGACAATGGGCCTTCCTTGATGTCAACAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             105366 517 +    130206 ACTGGCCACAATCCTT-GCCCAGATGCCTGAGAGAATATCCATGATTATTCCGAAAAGCAAGAAAC-C-TATGTCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAGCCAGATG-----TGTAGGGT----AAAAATTTACACCCcatgttattttcaaatattcaactAATATGCtaac----------------cacaaagcagttttatC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AGTGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCAGCACTAGCAACCCAGTAAGGCAAGAATGTCACAACTGTTCCA---------AGCC---A-GACTCATC-----------TTTATAGCACCCAAATGGACAATGGGCCTTCCTTGATGTCAACAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21110103 517 -  24206276 ACTGGCCACAATCCTT-GCCCAGATGCCTGAGAGAATATCCACGATTATTCCGAAAAGCAAGAAAC-C-TATGTCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAACCAGATG-----TGTAGGGT----AAAAATTTACACCCCATGTTATTTTCAAACATTCAACTAATATGCTAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCAGCACTAGCAACCCAGTAAGACAAGAATGTCACAACTGTTCCA---------AGTC---A-GACTCATC-----------TTTATAGCACCCAAATGGACAATGGGCCTTCCTTGATGTCAACAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22245463 522 + 158406734 ACTGGCCACAATCCTT-GCCCAGATGCCTGAGAGAATATCCATGATTATTCTGAAAAGCAAGAAAC-C-TACATCTCACCAATCCACTCAATCAAGTATGATAATCCTATTTTGCCAATTCTGTCCTCACTAAAATTGAAAGGAATACCAAACCAGATGAGATATGTAGGGT----AAAAATTCATACCCCATGTTATTTTTAAACATACAACTAATATGCTAAC----------------CACAAAGCAGTTTTATCTTGTTATTGCTTACAG---TACT--AATTCA------TAATCACTTGAAAGTAAACAGAGCA-------ATACAACATCCTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AGTGTTCAAATGATAAACATTCTATTCTGTATTCCTGTCTTGGCTCCGAATTCATCAATCACATTAGTTAGGACACTGCCAATAAAAACCAGCACTAGCAACCCAATAAGACAAGAGTATCACAACTGTTCCA---------AGCC---A-GACTCATC-----------TTTATAGCACCCAAACAGACAATGGgccttccttgatgccaacat
i calJac3.chr6              I 306 C 0
s mm10.chr7                  81357517 488 + 145441459 ATGGGC---------T-TCCCAGGAG-----AAGAATATCCATGATTATTCTGAAAGACAGAACACTT-TATGTCTCCTCAA-----------ATATTTAATAACCCTACTTCATCAGCTTTGCCTCCAATAAAATCAAAAGGAAT-----ATCAGACG-----TATAGGGTAAAAAAAAAATCACAACTACAGCTATTTT-GACTAAATAACTTATTAGCTATCAACAAAGCATTTTTTTAACAAAGCAGTTTTATCTTGCTAATGTTTATAG---TAGTTAGATTTA------TAAATATTTAGGAGTAGACGGAACAACTACATATGCAATGCCCTACAAGTTT-CTGACCCTCGTAGACTTCCTCCC-------TCAGCT-AAAGGGATGCTCCTCTGTTTCCTCATCTTGCCTCTGAA-TCGTCAACTGCAGAAGTCAAGATGCTGTCAGTAGACA----------CAACTCAATA----------GTAAGCACAGCCCCA---------TGCCCCAC-AACCCAAC-----------TCACAAGCTCGTGAGGAGGCACTGGA--TTCCTTGCTGCCCACAC
i mm10.chr7                 I 5 I 124
s canFam3.chr3               54414714 537 +  91889043 AAAGACCATGGTCCCTGGCCTGGCTGCCTGGGACAACATCCATGAGTATTCTGAAAGGCAAGAAAC-CTTATACTTTATCAAACCAGTCAGCCCAGTGTGACAACTCTAAATCACTAATTCTGTCTCCACTAAAACAGAGAGGAATAGCAAAGCAGATG-----TG----------A-----TCACAGCCAA-GCTATTTTCAAACATGTTCTTGATAAGCTAGC----------------CACAAAGCAGTTTTATCTAGTCATGGCTTACTA---TACT--AATTTAAATTTCCAATTACTTTAAAATCAACAGAGCGATTTTGTATACAATGTCCTACAAGTTTACTGGTCCAAACTGGCTTTGTCCCCAAATGTTCAAAGAAGGAACATTCTA--CTGTTTCCTGGTCTTCACTCTGAACTC---AGTCACAGGAATCAGGACACTGCCAGTAAAAACCACCCATAGCAATCTGACAAGACAAGAATGTCTCCACTGTTCCACCTACTCAGAGCC---ATGTCCCATCACTGCCGGTGTCTCACAGCACCTGAACGGACACTGGGCCTTCCTTGATGCCAACAC
i canFam3.chr3              C 0 C 0

a score=26812.000000
s hg38.chr15_KI270850v1_alt    343705 15 +    430880 GGTAACGTAATGAAT
s panTro4.chr15              80125317 15 +  99548318 GGTAACGTAATGAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10133754 15 +  10928107 GGTAACGTAATGAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17206187 15 - 121039945 GGTAACGTAATGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106687856 11 - 170124641 GGTAAGAT----AAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108421469 11 - 171882078 GGTAAGAT----AAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             105883 11 +    130206 GGTAAGAT----AAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21110620 11 -  24206276 GGTAAGAT----AAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22245985 15 + 158406734 gataaggtaatgaat
i calJac3.chr6              C 0 I 973
s canFam3.chr3               54415251 15 +  91889043 TGTAAGATAATGGAT
i canFam3.chr3              C 0 I 119
e mm10.chr7                  81358005 124 + 145441459 I

a score=80440.000000
s hg38.chr15_KI270850v1_alt    343720 31 +    430880 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACTGTTTGTAC
s panTro4.chr15              80125332 31 +  99548318 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACTGTTTGTAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10133769 31 +  10928107 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACTGTTTATAC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17206202 31 - 121039945 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACTGTTTGTAC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106687867 31 - 170124641 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACTGTTTGTAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108421480 31 - 171882078 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACTGTTTGTAC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             105894 31 +    130206 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACTGTTTGTAC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21110631 31 -  24206276 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCATTGTTTGTAC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22246973 27 + 158406734 CAGTTTTAAAT----------------------------------------------------------CCTTTCCCCACTG----TAC
i calJac3.chr6              I 973 C 0
s canFam3.chr3               54415385 86 +  91889043 CTATCTTCTGTTTGGTCTATTATAAAACCTAGAGGCCTCTCCGTTCTTGGCAACCAGTTTGGCCTTTGACCTGTCTCAA---TTTATGC
i canFam3.chr3              I 119 C 0
e mm10.chr7                  81358005 124 + 145441459 I

a score=1727199.000000
s hg38.chr15_KI270850v1_alt    343751 482 +    430880 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTG-CCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGATATTTCCTAAAAGGAATAGG-CCCAACGTGTTGCT--ACAGCAAGAAACTGGGCAATGTCAGCAATCTTTTACG-ACAAAAACAG-----AATATAAT--GGTCTCATCCAAAAGCATGGTAATGTCATTTCACAGGAAAACAATGGCACCAGAGAAAGTACAAAGATGGGTTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAAACAGACACACTGAAGCCTAT-GGAAACAAATGGAATGCAGAAACT-AACACTAACTTAGTCATCAAATTCAGGACCTCTGAAGAG---------------------------CCAGTGGTTAATGAATATCT--------------CCCTGAAGC
s panTro4.chr15              80125363 482 +  99548318 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTG-CCCATTTATTTCACCCTCCTCTTTCAGCAGAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGATATTTCCTAAAAGGAATAGG-CCCAACGTGTTGCT--ACAGCAAGAAACTGGGCAATGTCAGCAATCTTTTACG-ACAAAAACAG-----AATATAAT--GGTCTCATCCAAAAGCATGGTAATGTCATTTCACAGGAAAACAATGGCACCAGAGAAAGTACAAAGATGGGTTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAAACAGACACACTGAAGCCTAT-GGAAACAAATGGAATGCAGAAACT-AACACTAACTTAGTCATCAAATTCAGGACCTCTGAAGAG---------------------------CCAGTGGTTAATGAATATCT--------------CCCTGAAGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10133800 483 +  10928107 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTGCCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACATTTCCTAAAAGGAATAGG-CCCAACATGTTGCT--ACAGCAAGAAATTGGGCAATGTCAGCAATCTTTTAGG-ACAAAAACAG-----TATATAAT--GGTCTCATCCAAAAGCATGGTAATGTCATTTCACAGGAAAACAATGGCACCAGAGAAAGTACAAAAATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCACAGGAGAACGAGATCCAGCCCAACTCTGTGAGCAAACAGACACACTGAAGCCTAT-GGAAACAAATGGAATGGAGAAACT-AACACTAACTTAGTCATCAAATTCAGGACCTCCGAAGAG---------------------------CCAGTGGTTAATGAATATCT--------------CCCTGAAGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17206233 480 - 121039945 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTG-CCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAAGACAAAGATGTGGAAGGACATTTCCTAAAAGGAATAGG-CCCAACGTGTGGCT--ACAGCAAGAAACTGGGCAATGTCAGCAATCTTTTACG-ACAAAAACAG-----AATATAAT--GGTCTCATCCAAAAGCATGGTA--GTCATTTCACAGGAAAACAATGGCACCAGAGAAAGTACAAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAAACAGACACACTGAAGCCTAT-GGAAACAAACGGAATGGAGAAACT-AACACTAACTTAGTCATCAAATTCAGGACCTCCGAAGAG---------------------------CCAGTGGTTAATGAACATCT--------------CTCTGAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106687898 472 - 170124641 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGTTAGTTCTTG-CCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCT--ACAGCAAGAAACTGGGCAATATCAGCAATCTTTTAAG-ACAAAAACAG-----AATATAAT--GGTCTCATTCAAAAGCATGGTAATGTCATTTCATATGAAAACAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAACAGATACAC-----------GGAAATAAATGGAATGGAGAAACT-AACACTAATTTAGTCATCAAATTCAGGACCTCAGAAGAG---------------------------CCAGTGGTTAATGAACTTCT--------------CCCTGGAGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108421511 472 - 171882078 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGTTAGTTCTTG-CCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCT--ACAGCAAGAAACTGGGCAATGTCAGCAATCTTTTACG-ACAAAAACAG-----AATATAAT--GGTCTCATTCAAAAGCATGGTAATGTCATTTCATATGAAAACAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAACAGATACAC-----------GGAAATAAATGGAATGGAGAAACT-AACACTAACTTAGTCATCAAATTCAGGACCTCAGAAGAG---------------------------CCAGTGGTTAATGAACTTCT--------------CCCTGGAGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             105925 472 +    130206 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGTTAGTTCTTG-CCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGATAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCT--ACAGCAAGAAACTGGGCAATGTCAGCAATCTTTTACg-acaaaaacag-----aatataat--gGTCTCACTCAAAAGCATGGTAATGTCATTTCATATGAAAACAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAACAGATACAC-----------GGAAACAAATGGAATGGAGAAACT-AACACTAACTTAGTCATCAAATTCAGGACCTCAGAAGAG---------------------------CCAGTGGTTAATGAACTTCT--------------CCCTGGAGC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21110662 472 -  24206276 TTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTG-CCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCT--ACAGCAAGAAACTGGGCAATGTCAGCAATCTTTTACG-ACAAAAACAG-----AATATAAT--GGTCTCATCCAAAAGCATGGTAATGTCATTTCATATGAAAACAACGGCACCAGAAAAACTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAAGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAACAGATACAC-----------AGAAACAAATGGAATGGAGAAACT-AACACTAACTTAGTCATCAAATTCAGGACCTCAGAAGAG---------------------------CCAGTGGTTAATGAACTTCT--------------CCCTGGAGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22247000 486 + 158406734 CTTTCCAAATCAGAGACTGACCTCAGTGGGGACTGGCTAGTTCTTG-CCAATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAAATATGGAAGGATATTTCCTAAAAGAAATGGGCCCCAATGTGTTACTACACAGCAAGAAATTGGGCAATGTCACCAATCTTTTATG-ACAAAAACAA-----AATATAATGGGGTCTCCTCCAAAAGCATGGTAATGTCATTTCATAGAAAAACAATGGTCCCAGAGAAAGTACAAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCAGCAGCACTATCAGAGGAGAATGAGATCCAGCCCAACGCTGTGAGCAGACAG--ACACTGAAGCCTAT-GGAAACAAATGGAATGGAGAAACT-AACATTAACTTAGTCATCAAATTCAGGACCTCAGAAGAG---------------------------CCAGTGGTTAATGAACATCT--------------CCCTGAAGC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81358129 422 + 145441459 CCTTTCACATTGCAAGGTGACCTGGGTGAGGAC-------TTCTCG-ACACATTA-------CCCTTCCTTCAGCACTGAGGAAGACATTCAAGGAGATGAAACATTAT-------------------------------TCCCTAACATGCATAGG-GCTAATGTGTTGCT--GTGACAAGAAACTGGGCATTGCTAGCAATATCTCACA---TAAAACA-----------AGT--AGCCTC--CAGAAAG-----------CATTCCAT------ACAGTGACCACACAATAAACACAAACGTGGGCTGTCAGAATCACTAGGTGAACAGGGTATTCACACTATTAGGGGAGACTGGGATAGGGATGAGTTCTAT---------------------------ACAAACACATGCAACAGAGAAA-T-AATATTCACTCAG---TCAGGTACTAGGCCACAGAACAGTGACTTGGTTGGAAAGCAATGAAGACATTAGTAGTTAATAAGTAACTCATTTACTTCCAAGCTCAGGTGt
i mm10.chr7                 I 124 C 0
s canFam3.chr3               54415471 466 +  91889043 CTTTCCAGACCAGAGACTAAGCTCAGTGGGGACTGGCTCGTTCTTG-CCCATTT---------TAGTACTTCAGCACTGGGGCAGGGCGCCA-----AAAAACCATCACTTCCATCCAGGACAATGACATGGAAGCTCATTCCTTAAAAGGCACAGA-TCCAGGGTGCTGCT--ACGCCAAGAACTTGGGTACCATCAGCAATATTTTGCAAACAAAAACATAAATCAATATAAC--GGCCCCATCCAAAAGCAAGGTAATGTCATTTCACAGGCAAACAGTGGCACT------AATACAATCATGGGCTGCCAAAACCTTTAAGTGAACAGGGCAGCAGAACTATCAGGGGAGAATGAGATCAGGTCCAGTTTTGTGATGGGACAAATGTACTGAAGCCTACAAAAAACAAATGG-ATAGAGAAACTGAACATTCACTTAGTTATCAACTCCAGAACCTCAGAAGAG---------------------------C----AGTCGGTGAGTATCT--------------CCTGGAAGC
i canFam3.chr3              C 0 I 16

a score=175043.000000
s hg38.chr15_KI270850v1_alt    344233 54 +    430880 AGTACTAGACAAAGATGAA---AAACACATTTAATACATATTTAGGATAATTTATTT
s panTro4.chr15              80125845 54 +  99548318 AGTACTAGACAAAGATGAA---AAACATATTTAATACATATTTAGGATAATTTATTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10134283 54 +  10928107 AGTACTAGACAAAGATGAA---AAACATATTTAATACACATTTAGGATAATTTATTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17206713 54 - 121039945 GGTACTAGACAAAGATGAA---AAACATATTTAATACATATTTAGGATAATTTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106688370 54 - 170124641 GGTACTAGACAAAGATGAA---AAACAAACTTAATACATACTTAAGATAATTTATTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108421983 54 - 171882078 GGTACTAGACAAAGATGAA---AAACAAACTTAATACATACTTAAGATAATTTATTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             106397 54 +    130206 GGTACTagacaaagatgaa---aaacaaactcAATACATacttaagataatttattt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21111134 54 -  24206276 GGTACTAGACAAAGATGAA---AAACAAACTTAATACATACTTAAGATAATTTATTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22247486 54 + 158406734 ATTAGTAGACAAAGATGAA---AAACAAATTTAATACACATTTAAGATGATTTATTT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81358551 57 + 145441459 aatataaaaaaaaaaaaaaaCCAAACAGATTTAACATATACTTAAGATTATGTACct
i mm10.chr7                 C 0 I 143
e canFam3.chr3               54415937 16 +  91889043 I

a score=715304.000000
s hg38.chr15_KI270850v1_alt    344287 235 +    430880 TTTAAACCTTTTAAAATATAtagagat-------ggggtcttgct---------------------------------atgtttcccaggctgggca--------actcctcgg--ctcaagccat-----------------------------------------cctgctgcctctg-----------------cttaagtgctgagCCA---CCCAGGCCAGCCTAAGATTaaatttaaatgtcagaaccttaaggattcctaagagaccaggacatct-ggtgacactcctcactttagaggttgacAAATGGACCCCTCCTTCCCCAGTGCATCCCTGACT
s panTro4.chr15              80125899 235 +  99548318 TTTAAACCTTTTAAAATATAtagagat-------ggggtcttgct---------------------------------atgtttcccaggctgggca--------actcctcgg--ctcaagccat-----------------------------------------cctgctgcctctg-----------------cttaagtgctgagCCA---CCCAGGCCAGCCTGAGATTAAATTTAAATGTCAGAACCTTAAGGATTCCTAAGAGACCAGGACATCT-GGTGACATTCCTTACCTTAGAGGTTGACAAATGGACCCCTCCTTCCCCAGTGCATCCCTGAGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10134337 235 +  10928107 TTTAAACCTTTTAAAATAAAtagagat-------ggggtctcgct---------------------------------atgtttcccaggctgggca--------actcctcgg--ctgaagccat-----------------------------------------cctgctgcctctg-----------------cttaagcgctgagCCA---CCCAGGCCAGCCTAAGATTAAATTTAAATGTCAGAACCTTAAGGATTCCTAAGAGACCAGGGCATCT-GGTGACATTCCTTACCTTAGAGGTTGACAAATGGACCCCTCCTTCCCCAGTGCATCCTTGAGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17206767 236 - 121039945 TTCAAACCTTTTAAAATATAtagagatg------ggggtctcact---------------------------------atgtttcccaggctgggca--------actcctcgg--ctcaagccat-----------------------------------------cctgatgcctctg-----------------cttaagtgctgagCCA---CCCAGGCCAGCCTAAGATTaaatttaaatgtcagaaccttaaggattcctaagagaccaggacatct-ggtgacattccttaccttagaggttgacAAATGGACCCCTTCTTCCCCAGTGCATCCCTGAGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106688424 233 - 170124641 TTTAAACCTTTTAAAATATAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggca--------actcctggg--ctcaagccat-----------------------------------------cctgctgcctctg-----------------cttaagtgctgagCCA---CCAAGGCCAGCCTAAGAT--AATTTAAATGTCAGAACCTTAAGGATTCCTAAGAGACCAGGACATCT-GGTGACATTCCTTACCTTAGAGGTTGACAAATGGACCCCTCCTTCCCCAGTGCATCCGTGAGT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108422037 221 - 171882078 TTTAAACCTTTTAAAATATAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggca--------actcctggg--ctcaagccat-----------------------------------------cctgctgcctctg-----------------cttaagtgctgagCCA---CCAAGGCCAGCCTAAGAT--AATTTAAATGTCAGAACCTTAAGGATTCCTG------------TCCT-GGTGACATTCCTTACCTTAGAGGTTGACAAATGGACCCCTCCTTCCCCAGTGCATCCATGAGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             106451 233 +    130206 tttaaaccttttaaaatacatagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggca--------actcctggg--ctcaagccat-----------------------------------------cctgctgCCTCTG-----------------CTTAAGTGCTGAGCCA---CCAAGGCCAGCCTAAGAT--AATTTAAATGTCAGAACCTTAAGGATTCCTAAGAGACCAGGACATCT-GGTGACATTCCTTACCTTAGAGGTTGACAAATGGACCCCTCCTTCCCCAGTGCATCTGTGAGT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21111188 233 -  24206276 TTTAAACCTTTTAAAATACAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggca--------actcctggg--ctcaaaccat-----------------------------------------cctgctgcctctg-----------------cttaagtgctgagCCA---CCAAGGCCAGCCTAAGAT--AATTTAAATGTCAGAACCGTAAGGATTCCTAAGAGACCAGGACATCT-GGTGACATTCCTTACCTTAGAGGTTGACAAATGGACCCCTCCTTCCCCAGTGCATCTGTGAGT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22247540 231 + 158406734 TTTAAACCTTTT-TAATATAtggagat--------gggtcttgct---------------------------------atgtttcccaggctgggca--------actcctggg--ctcaagccat-----------------------------------------cctgctgcctctg-----------------cttaagtgctgagCCA---CCCAGGCCAGCCTAAGAT--aatttaaatgccagaaccttaaggattcctaagagaccaggacatct-ggtgacatcccttaccttagaggttgacAAATAGACCCCTCCCACCCCAGTGTATCCCTGAGT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81358751 331 + 145441459 TTAAAACAATTTAAGAtttatttttatgtatataggtgtcttgcctgcacatacgtttgtgcactgtgtgcatgcctgatgcctcaaaggctagagagggtttggatccccaggaactggagctacagataatcataacatgccataagtgtggtaggaactgaatacccaggtcctctggaagagcaaccagtgctcttaaccactgagccatctctccagtcA-CTTAAGAC--TATTTAAATGACAGAAACTAAAGGACTTCAAAGAGATCATAGCAGATCAGAGATATCCTACACCTTAGAAGTTAACAACTAGAC-------TACCTA------CCCTGAAT
i mm10.chr7                 I 143 C 0
e canFam3.chr3               54415937  16 +  91889043 I

a score=1425301.000000
s hg38.chr15_KI270850v1_alt    344522 393 +    430880 ATACCAATCAGAAAGCCTCAGGGAAGAAAGCTCCAGCATGAGTTGTGTCTG-AT---GGTCTTTGAATTAGAATGTggagagggtagacaaaattctggatatcccttccagagtttc-tcttgaggacatccacCCGTG-GAAAAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCACGGAACGGCACAAGTGAGAGATGGAGCCAGCT-CCTTGTGCTGTGGCACATGCATGTG--CCAGATAACCTGCCTCTTTCCTCTCCACTCAGCCTCA-AGAAGTTCCTGAGTCTGTTCCCATTAGTATTTACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG--CCTCCT--CTAGACAGTTCACAAGTGTGTGAACTAAGGTCA
s panTro4.chr15              80126134 393 +  99548318 ATACCGATCAGAAAGCCTCAGGGAAGAAAGCTCCAGCATGAGTTGTGTCTG-AT---GGTCTTTGAATTAGAATGTGGGGAGGGTAGACAAAATTCTGGGCATCCCTTCCAGAGTTTC-TCTTGAGGACATCCACCCGTG-GAAAAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCACGGAACGGCACAAGTGAGAGATGGAGCCAGCT-CCTTGTGCTGTGGCACATGCGTGTG--CCAGATAAACTGCCTCTTTCCTCTCCACTCAGCCTCA-AGAAGTTCCTGAGTCTGTTCCCATTAGTATTTACTCCACAGAA-AGATAATTCTTTGCAGATATGGAGACTTCACCATGCAACCAAG--CCTCCT--CTAGACAGTTCACAAGTGTGTGAACTAAGGTCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10134572 389 +  10928107 ATACCAATCAGAAAGCCTCGGGGAAGAAAGCTCCAACATGAGTTGTGTCTG-AC---GGTCTTTGACTTAGAATGTGGGGAGGGTAGACAAAATTCTGGACATCACTTCCAGAGTTTC-TCTTGAGGACATCCACCCGTG-GAAAAAGTAA----AAGAGTAGCACACAGCCAGTCTCCACGGAACGGCACAAGTGAGAGATGGAGCCAGCT-CCTTGTGCTGTGGCACATGCATGTG--CCAGATAACCTGCCTCTTTCCTCTCCACTCAGCCTCA-AGAAGTTCCTGGGTTTGTTCCCATTAGTATTTACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG--CCTCCT--CTAGACAGTTCACAAGTGTGTGAACTAAGGTCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17207003 393 - 121039945 ATACCAATCAGAAAGCCTCGGGGAAGAAAGCTCCAGCATGAGTTGTGTCTG-AC---GGTCTTTGAATTAGAATGTGGGGAGGGTAGACAAAATGCTGGACATCCCTTCCAGAGTTTC-TCTTGAGGACATCCACCCATG-GAAAAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCACGGAATGGCACAAGTGAGAGACAGAGCCAGCT-CCTTGTGCTGTGGCACATGCATGTG--CCAGATTACCTGCCTCTTTCCTCTCCACTCAGCCTCA-AGAAGTTCCTGAATTTGTTCCCATTAGTATTTACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG--CCTCCT--CTAGACAGTTCACAAGTGTGTGAACTAAGGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106688657 393 - 170124641 GTACCAATCAGAAAGCCTCGGGGAAGAAAGGTCCAGCATGAGTTGTGTCTG-AC---TGTCTTTGAATTAGAATGTGGAGAGGGTAGACAAAATTCTGGACATCCCTTCCAGAGCTTC-TCTTGAGGACATCCACCCGTG-GAAGAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACATGCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCA-AGAAGTTCCTGAGTTTGTTCCCATTAGCACTTACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG--CCTCCT--CTAGACAGTTCACAAGCGTGTGAACTAAGGTCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108422258 393 - 171882078 GTACCAATCAGAAAGCCTCGGGGATGAAAGGTCCAGCATGAGTTGTGTCTG-AC---TGTCTTTGAATTAGAATGTggagagggtagacaaaattctggacattccttccagagtttc-tcttgaggacatccacCCGTG-GAAGAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACATGCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCA-AGAAGTTCCTGAGTTTGTTCCCATTAGCACTTACTCCACAGAA-AGATAATTCTTTGCAGATTTGGAGACTTCACCATGCAACCAAG--CCTCCT--CTAGACAGTTCACAAGCGTGTGAACTAAGGTCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             106684 393 +    130206 GTACCAATCAGAAAGCCTCAGGGAAGAAAGGTCCAGCATGAGTTGTGTCTG-AC---TGTCTTTGAATTAGAATGTGGAGAGGGTAGACAAAATTCTGGACATCCCTTCCAGAGTTTC-TCTTGAGGACATCCACCCGTG-GAAGAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACATGCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCA-AGAAGTTCCTGAGTTTGTTCCCATTAGCACTTACTCCACAGAA-AGATAATTCTTTGCATATCTGGAGACTTCACCATGCAACCAAG--CCTCCT--CTAGACAGTTCACAAGCGTGTGAACTAAGGTCA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21111421 393 -  24206276 GTACCAATCAGAAAGCCTCGGGGAAGAAAGCTCCAGCATGAGTTGTGTCTG-AC---TGTCTTTGAATTAGAATGTGGAGAGGGTAGACAAAATTCTGGACATCCCTTCCAGAGTTTC-TCTTGAGGACATCCACCCATG-GAAGAATTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACATGCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCA-AGAAGTTCCTGAGTTTGTTCCCAGTAGCACTTACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCGTGCAACCAAG--CCTCCT--CTAGACAGTTCACAAGCGTGTGAACTAAGGTCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22247771 390 + 158406734 GTACCAATCAGAAAGCCTCAGGGAAGAAAGTTCCAGCATGACTTGTGTCTG-AC---CGTCTTTGAATTAGAATGGGGAGAGGGTAGACAAAATTCTGGACATCCCTTCC--AGTTTC-TCCTGAGGACATCCACCCGTG-AAAGAGGTAAAAGCAAGAGTAGCATACAGCCAGTCTCCATGGAAGGGCACGAGTGGGAGGCAGAGCCAGCC-TCTTGTGCTGTGGCACATGCGTGTG--CCAGAGTATCTGCTTCTATCCTCTCCACTCAGCCTCA-AGAAATTGCTGAGTTTGTTCCCATTAGTACTTACTCCACAGAA-ATATAATTATTTGCA-ATCTGGAGACTTCACCATGCAACCAAG--CCTCCT--TTAGAAGGTTCACAAGCGTGTGAACTAAGGTCA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81359082 346 + 145441459 GTACCAATCAAAATATCTCAGGGCAAAAAGTCAGAAAATGAACTTTGAGTGCAA---TGACTTTCAATTAAAAATAAGGAACAGCAGACAAAACTGTAGACATTATTTTCAAGGTTTTGTCTTT----------CTTATG-CAACAATCAAAAACAAG-------------CCTTTTCCACAGAAGCCCAC-AGTAAGAGGTGGGGCCAGCCATCTTCTGCTGCAGCACA-GCCTGTGCACCAGGCTGTCTGCTTCCT-----TCAACTCAATCTCA-AGGCTGTCCT--------------------TTATTCTACAGAACACATGGCTCTTT--AGACCTG--GACTTTACCAGACTATCAAA--CCCTCTTCCAAAAGAGTTCATCACTGTGTGAAA-AAGGTCA
i mm10.chr7                 C 0 I 256
s canFam3.chr3               54415953 357 +  91889043 ATACCAAACAGAAAGCCTCAGGGAAAATAGCTCCAGCATAGGTTATATATC-TCACAGGTTTCTGAATTAGAAAGGGGAAAGG-----TGGAATTCTGGGCATCACTTCCAGGGTATC-TCCTGAAGATGCCCACCCGTGAAAAGAATCAAAAGCTACACTGGTACACAGCCAACCTCCATGAAAGACCACAAGGAAGAGATGCCTCCAACC-CCATACG----GGCACA-----GCG----------------TCTTTCCTCTCTGTTCAGCCTCAGAGAAATTCCTGAGTTTG-TCCCATTAGTACTTACCCCACAAAA--------------CAGACC-AGAGACTTCACCACACAACTAAGTCCCTCTT--CTGGACAGTTCACCAGTCTAGGAACTAAGGTCA
i canFam3.chr3              I 16 C 0

a score=72780.000000
s hg38.chr15_KI270850v1_alt    344915 21 +    430880 CTTCCTCTCTGCTCCCAAAAT
s panTro4.chr15              80126527 21 +  99548318 CTTCCTCTCTGCTCCCAAAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10134961 21 +  10928107 CTTCCTCTCTGCTCCCAAAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17207396 21 - 121039945 CTTCCTCTCTGCTCCCAAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106689050 21 - 170124641 CTTCCTCTGTGCTCCCAGAAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108422651 21 - 171882078 CTTCCTCTGTGCTCCCAGAAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             107077 21 +    130206 CTTCCTCTGTGCTCCCAGAAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21111814 21 -  24206276 CTTCCTCTGTGCTCCCAGAAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22248161 21 + 158406734 CTTCCTCTCTGCTCCCAGAAT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54416310 21 +  91889043 CATACTCCCTGTGCCCAGAAC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81359428 256 + 145441459 I

a score=3368329.000000
s hg38.chr15_KI270850v1_alt    344936 856 +    430880 GAGGCCTCAGGCCTCACACATGCTCAAGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGACGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGACAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAG--ACAGGG-TTTTAAAGGCTAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGATATATATTCTTTTAGACTTTCTTCCTGAGCAATTTT--GATTAGTTCTAGTTATACTATAATTTAAACAAATGCTCCTTCTCTCCTCATTCAAC----TTTTCCATATTGCCAG----TCTTTATAACCATTTAAAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGACCCA---------TACTCTTCCTGTTATATAT----ATACTTTCCAAGTTTTCAGAACCATAAATAAAAA--TTAAGATGTAGCTTCTT----------CATATTTTGTGTTTTCTTTGGTCAGATTCCTAGAAAGCCGAATGCCAAAAATGCTATCTATGAGAGCTCTGCATTG------TATCATAAATGTATCAGAA---------CACCATAAGC-TGTGTCAAACCTTT--AAATTCTAATTTACGTGTGTGAAATGAT---ACATTATCAAAATAACTCGTTGACAGAATATTTTAAAATCCCCAAATATTAATCAGTCATGAGAT
s panTro4.chr15              80126548 856 +  99548318 GAGGCCTCAGGCCTCACACATGCTCACGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGTTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGACAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAG--ACAGAG-TTTTAAAGGCTAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGACATATATTCTTTTAGACTTTCTTCCTGAGCAATTTT--GATTAGTTCTAGTTATACTATAATTTAAACAAATGCTCCTTCTCTCCTCATTCAAC----TTTTCCATATTGCCAG----TCTTTATAACCATTTAAAATGCATTTATCATATTCTATTTAGGGAACAAGGTGCATCTCACTGACCCA---------TACTCTTCCTGTTATATAT----ATACTTTCCAAGTTTTCAGAACCATAAATAAAAA--TTAAGATGTAGCTTCTT----------CATATTTTGTGTTTTCTTTGGTCAGATTCCTAGAAAGCTGAATGCCAAAAACGCTATCTATGAGAGCTCTGCATTG------TATCATAAATGTATCAGAA---------CACCATAAGC-TGTGTCAAACCTTT--AAATTCTAATTTACGTGTGTGAAATGAT---ACATTATCAAAATAACTCGTTGACAGAATATTTTAAAATCCCCAAATATTAATCAGTCATGAGAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10134982 859 +  10928107 GAGGCCTCAGGCCCCACATATGCTCAAGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAG--ACAGGG-TTTTAAAGGATAGTTTTGTTATAAAGT-AATAATCACAC----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGATATATATTCTTTTAGACTTTCTTCCTGAGCAATTTA--TATTAGTTCTAGTTATACTATAATTTAAACAAATGCTCCTTCTCTCCTCATTCAACA-ATTTTTCCATATTGCCAG----TCTTTATAACCATTTAAAATGCATTTATCATATTCTATTTAAGGAACAAGGTACATCTCACTGACCCA---------TACTCTTCCTGTTATATAT----ATACTTTCCAAGTTTTCAGAACCATAAATAAAAA--TTAAGATGTAGCTTCTT----------CATATTTTGTGTTTTCTTTGGTCTGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCTATGAGAGCTCTGCATTG------TATCATAAATGTATCAGAA---------CACCATAAGC-TGTGTCAAAACTTT--AAATTCTAATTTACATGTGTGAAATGAT---ACATTATCAAAATAACTCGTTGACAGAATATTTTAAAATCCCCAAATATTAATCAGTCATGAGAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17207417 859 - 121039945 GAGGCCTCAGGCCCCACACATGCTCAAGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAG--ACAGGG-TTTTAAAGGATAATTTTGTTATAAAAT-AACAATCACAT----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGATATATATTCTTTTAGACTTTCTTCCTGAGCAATTTT--GATTAGTTCTAGTTATACTATAATTTAAACAAATGCTCCTTCTCTCCTCATTCAACA-ATTTTTCCACATTGCCAG----TCTTTATAACCATTTAAAATGCATTTATCATATTCTATTTAGGGAACAAAGTACATCTCACTGACCCA---------TACTCTTCCTGTTATATAT----ATACTTTCCAAGTTTTCAGAACCATAAATAAAAA--TTAAGATGTAGCTTCTT----------CATATTTTGTGTTTTCTTTGGTCAGATTCCTAGAAAGTTGAATGCCAAAAATGCTATCTATGAGAGCTCTGCATTG------TATCATAAATGTATCAGAA---------CACCATAAGC-TGTGTCAAACCTTT--AAATTCTAATGTACGTTTGTGAAATGAA---ACATTATCAAAATAACTCATTGACAGAATATTTTAAAATCCCCAAATATTAATCAGTCATGAGAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106689071 862 - 170124641 GAGGCCTCAGGCCCCACACATGCTCAAGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAG--ACAGGG-TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATTCTTTTAGACTTTCTTCCTGAGCAGTTTT--GATTAGTTCTAGTTATACTATAATTTAAACAAATTCTCCTTCTCTCCTCATTCAGCA-ATTTTTCCATATTGCCAG----TCTTTATAGCCATTTAAAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGACCCA---------TACTCTTCCTGCTACATAT----ATACTTTCCAAGTTTTCAGAACCATAAACAAAAA--TTAAGATGTAGCTTCTT----------CATATTTTTTGTTTTGTTTGGTCAGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCTATAACAGCTCTGCATTG------TATCATAAATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCTAATTTACATGTGTGAAATGATACCACATTATCAGAATAACTCATTGACAGAATATTTTAAAATCCCCAAATATTAATCAGTCATGAGAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108422672 862 - 171882078 GAGGCCTCAGGCCCCACACACGCTCAAGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAG--ACAGGG-TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATTCTTTTAGACTTTCTTCCTGAGCAGTTTT--GATTAGTTCTAGTTATACTATAATTTAAACAAATTCTCCTTCTCTCCTCATTCAGCA-ATTTTTCCATATTGCCAG----TCTTTATAGCCATTTAAAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGACCCA---------TACTCTTCCTGCTACATAT----ATACTTTCCAAGTTTTCAGAACCATAAACAAAAA--TTAAGATGTAGCTTCTT----------CATATTTTTTGTTTTCTTTGGTCAGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCTATAACAGCTCTGCATTG------TATCATAAATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCTAATTTACATGTGTGAAATGATACCACATTATCAGAATAACTCATTGACAGAATATTTTAAAATCCCCAAATATTAATCAGTCATGAGAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             107098 858 +    130206 GAGGCCTCAGGCCCCACACATGCTCAAGGC------ACACTCACCTGCAGCTTGTCGGTGcagcctggcctctctctctaTGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACtaggggaggaaaaaggaag--acaggG-TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----tacagaaattattaaaaacatcCA----A--------------CATTTAGCATTTGATATATATTCTTTTAGACTTTCTTCCTGAGCAGTTTT--GATTAGTTCTAGTTATactataatttaaacaaattctccttctctcctcatTCAGCA-ATTTTTCCATATTGCCAG----TCTTTATAgccatttaaaatgcatttatcaTATTCTATTTAGGGAACAAGGTACATCTCACTGACCCA---------TACTCTTCCTGCTACATAT----ATACTTTCCAAGTTTTCagaaccataaacaaaaa--ttaagatgtagcttctt----------catattttttgttttctttggtcaGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCTATAACAGCTCTGCATTG------TATCATAAATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCTAATTTACATGTGTGAAATGATACCACATTATCAGAATAACTCGttgacagaatattttaaaatccccaaatattaATCAGTCATGAGAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21111835 862 -  24206276 GAGGCCTCAGGCCCCACACATGCTCAAGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGACGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAG--ACAGGG-TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATTCTTTCAGACTTTCTTCCTGAGCAGTTTT--GATTAGTTTTAGTTATACTATAATTTAAACAAATTCTCCTTCTCTCCTCATTCAACA-ATTTTTCCATATTGCCAG----TCTTTATAGCCATTTAAAATGCATTTATCATATTCTATTTAAGGAACAAGGTACATCTCACTGACCCA---------TACTCTTCCTGTTACATAT----ATACTTTCCAAGTTTTCAGAACCATAAACAAAAA--TTAAGATGTAGCTTCTT----------CATATTTTTTGTTTTCTTTGGTCAGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCTATAACAGCTCTGCATTG------TATCATAAATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCTAATTTACATGTGTGAAATGATACCACATTATCAGAATAACTCGTTGACAGAATATTTTAAAATCCCCAAATATTAATCAGTCATGAGAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22248182 859 + 158406734 GAGGCCTCAGGCCCCACACATGCTCAAGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCAAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAACACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGGGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAG--ATAGGGTTTTTAAAGGATAGTTTCATTATAAAGT----AATCACAT----TATAGAAATTATTAAAAATACCGA--AGA--------------CATTTAGCATTTGATATATATTCTTTTAGACTTTCTTCCTGAGCAATTTC--GATTAGCTGTAGTTATACTATAATTTAAACAAATTCTCCTTTTCTCCTCATTCAACCTTTTTTTCCGTATTTCCAG----TCTTTATAACCATTTAAAATGCATTTATCATACTCTACTTAGGGAAAAAGGTACATCTCACTGACCCA---------TACTCCTCCTGTTACATAT----ATACTTTCCAAGTTTTCAGAACCATAAATAAAAA--TTAAGATGTACCTTCTT----------CATATTTTGTGTTTTCATTGGTCAGATTTCTAGAAGGGCAAATGCCACAAGTGCTATCTATGAGGGCTCTGTGTTA------TATCATAAATGTATCAGAA---------TACTATAAGCTTGTGTCAAAGCTTTAAAAATGCTAATTTACATGTGTGAAATGAT---ACATTATCAAAATAACTCATTGACAGAATATTTTTAAACCCCCAAATATTAATCAGTCATGAGAT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81359684 857 + 145441459 gagGTCTCAGGCTTCACACATAGCCACAGTTATATGGCACTCACCTGCAGCCTGCCGGTGGAGTCTAGCCTCTCTCTCTATGCTGAATGGGTCTTTAGGAGCTCCAAGAAGGTCCCAAGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGGAGCACTGGTTGGAGAGGGAGCAACTGCAGCAAGAGCAGCTTGTTCTTGGTCCATTCGGGACCCAACGCCCATCTTTAGAGGGTCTCTGGGACCATTTCCCGTCATAGAAAGAAAGGGCAGAGGAGGGGAAATGCGAAGGCTTGACTAGAGGAGGAAAAAACAGA--CACAAG-TTTTAAAAGACAGTTTTGTT-TAAAGT-AACGATCACAT----AACAGAAATATGAAAAAATATCTAATATAACATTTATAATTTGCATTTATATTTTGATATATTCTCTTTCAGTCTGTCTTCCTATTCATTTTTAAGATTAGTTATAG--ATAATATAATTAAAGTAAACTCTGTCTCTCAACAAA---GACA-TTTTTTTC---TTGCCAGAGAATTTTCATAACAATTT-TGATAAAGTCATCACATTTTATTTAGGAGACCAGTTACATCCTAAGGACCCAGTTACTTATTACTACTATTGCTA-ACAA----CTTCTTCCC----TCTGACACGCCTATGTTCTAT--TAGAAATGTA-TTTGGA----------CATGTTACACTTTATATTTGTGTTAAAGCTTGAAATTCTGAGCGTCaaaa---ttatgtattaaaatt---tattgatagaatattttctataaataaaaa---------------aaGC-TGTTTCATTTCTTT-----TTCTGTGTTAGCTTTG------------TCTCCTTCCAACTTAATCCTTAGATGTGTATCTGAGAGAGCT---GTATTTGTCAGGCATGAGGT
i mm10.chr7                 I 256 C 0
s canFam3.chr3               54416331 849 +  91889043 AAGGCCTCAGGCCCCACGCATGGCCACATCC-----ACACTCACCTGCAGCTTGCCGGTACAGCCTGGCCTCTCTTTCTATGCTGAACGGGTCTTTGGGAGCTTCGAGGAGATCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTGGATGCACTGGTTGGGGAGGGGCTGACCGCAGCGAGAGCAGCTTGCTCTTGGTCCATCCGGGACCCAACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCCGTCAGAGACAGGAAGGGGAGTGGAGGGGAAATTCGAAGGCTTGACTAGGGAAGCAAAAAGGAAGATACAGGT-TTTTAAAGGACAGTTTTGTTATAAAATCAATAATCATACTCTATATAGAAATTAT---------------AC--------------CAGTTAG-GTCTG--ATATTTTCTTTTAGGCTTTCTTCTTATTCATTTTT--GATTAGTTGT-TCTATGCTATAATTTAAACAAATACT---TTTCTCCCCAATTCAT--Tttttttcatattcccaggcagtcttcataatcatttttaattaatttatgataatctatttagggaacatgctacatttcgctaaccta---------ctcccctactgttaaacatttagacacgttccaagttttcaggattataaatacaaactttaaggtataacttcttgctttatatgtatggtgggtttttttctaggttcaattcctagata-taaaatGCCAACA-TGCTTTCTATGAG-GTTCTGCTTTC------TATCAGAAATGTATGAGAGTGTGGGTTTTATTATAAGCTTATGTCAAAGTACT--AAATTTTACTTAAGTAGATAAAAATGAT---ACATTATCAAAA----------------------AAAGACCCCACAAACTAATTACTCAGAATAT
i canFam3.chr3              C 0 I 562

a score=23472.000000
s hg38.chr15_KI270850v1_alt    345792 6 +    430880 AAATTT
s panTro4.chr15              80127404 6 +  99548318 AAATTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10135841 6 +  10928107 AAATTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17208276 6 - 121039945 AAATTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106689933 6 - 170124641 AAATTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108423534 6 - 171882078 AAATTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             107956 6 +    130206 AAATTT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21112697 6 -  24206276 AAATTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22249041 6 + 158406734 AAATTT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81360541 6 + 145441459 AAATTC
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54417180 562 +  91889043 I

a score=7795807.000000
s hg38.chr15_KI270850v1_alt    345798 2128 +    430880 CCAAGACTGAGTCCAATCTAAGTAATATAGACAGAACTACCAGCACTgtatctgaccccattttacagaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GTCAGTGAGAACAC----CATCGCCAACTTCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAGTAATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGGC-------------------------AACAAAAATGCTTATAAGGCATCTGAAACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTAATCTATCTATAATAT-----------CCCCTACCTATTCTAATTCATTTGCCAACTCCAC-TTAGCATGAAGACCACACGCATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAA--CTGAGGCAATGTTTCATAGATTCATCATGGCAT-GAATT---GAAAGCTGACACGGGTcagtggaaaaaatacaggagcta----cagtcagatctggattaaaatcctatctct----gctaattactaCTTAAAAATTTT-----TTACG-------TTATTACTTAATTGTGAGATATCATACATCAAAGTACATAAATGA-CACTGTTTAAGGGC--TAAAGAAAGCAC-CCCGTGTAGGTAAAGAAACAGAACACTGCCAGGGCCCTCACGTTTACTTTTGAAATTAAGTGTTTTCCAGTACTCTTGGAGTAGCTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGCAATGTATTGCTCAATGGGTCTTCAAAGCATCCTCTATCCTGTTAAGGATGAG-AACTCTACAAATGTCCACAATAATCTCCACTCCTCCCCTCATCCCATCTCCCAGCCTGCATTCCAGGGGACAGGCATCCC----ATAGATATTG-TACCCTCCTTCCCCTTGGACACACACAGGCAACTCCAC--CCACAACTCCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGGAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACAACTAAAAGCATGCCAGCAAAAC----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCGCAAGGGCCTTGTTAGAGGAAGTTACAA----GCTGACTGAAGACCAGAGTTCCTGCTGTTACAATAGCAGCAAAACTGCTGGGTTATACTACCCAGGCTTA---AAAGGTCAATGCCAGTACTTGGGAAACTGT--CACTGGGGTCCCTGGTCACAGCTGCTATTAATGCCTGGATACACCTA--------------------CAGCACAGTTAGAAATCCCAAACCATACTTCATCTTTACTGCCTGACGATTTGTTTATTAGAAGAATTCTCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGcagaatgacatggttaagcccattctttgactt-----aaacttaggattaaaccc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---gttttctcactggcatttagggtggagtatcaactatttcatgacattgttaggacagctcaataatt-agataccagatggaaagagctcagcacagtagcacccagcacacaat----aaatatttaaATATGAA-----ACAAAAAAAGA---------------------------------------------
s panTro4.chr15              80127410 2128 +  99548318 CCAAGACTGAGTCCAATCTAAGTAATATAGACAGAACTACCAGCACTGTATCTGAccccattttacagaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GTCAGTGAGAACAC----CATCGCCAACTTCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAGTAATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGGC-------------------------CACAAAAATGCTTATAAAGCATCTGAAACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGTATTTACTTCTACTATCTCCTATCTATATTATCTGTACTAATCTATCTATAATAT-----------CCCCTACCTATTCTAATTCATTTGCCAACTCCAC-TTAGCATGAAGACCACACGCATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAA--CTGAGGCAACGTTTCATAGATTCATCATGGCAT-GAATT---GAAAGCTGACACGGGTcagtggaaaaaatacaggagcta----cagtcagatctggattaaaatcctatctct----gctaattactaCTTAAAAATttt-----ttacg-------ttattacttaattgtgagatatcatacatcaaagtacataaatga-cactgtttaagggc--taaagaaagcac-cccgtgtaggtaaagaaacagaacactgccagggcccTCACGTTTACTTTTGAAATTAAGTGTTTTCCAGTACTCTTGGAGTAGCTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGCAATGTATTGCTCAATGGGTCTTCAAAGCATCCTCTATCCTGTTAAGGATGAG-AACTCTACAAATGTCCACAATGATCTCCACTCCTCCCCTCATCCCATCTCCCAGCCTGCATTCCAGGGGACAGGCATCCC----ATAGATATTG-TACCCTCCTTCCCCTTGGACACACACAGGCAACTCCAC--CCACAACTCCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGGGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGGAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACAACTAAAAGCGTGCCAGCAAAAC----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCGCAAGGGCCCTGTTAGAGGAAGTTACAA----GCTGACTGAAGACCAGAGTTCCTGCTGTTACAATAGCAGCAAAACTGCTGGGTTCTGCTACCCAGGCTTA---AAAGGTCAATGCCATTACTTGGGAAACTGT--CACTGGGGACCCTGGTCACAGCTGCTATTAATGCCTGGATACACCTA--------------------CAGCACACTTAGAAATCCCAAACCATACTTCATCTTTACTGCCTGACGATTTGTTTATTAGAAGAATTCTCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGGTTAAGCCCATTCTTTGACTT-----aaacttaggatgaaaccc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---gttttctcactggcatttagggtggagtatcaactatttcatgacattgttaggacagctcaataatt-agataccagatggaaagagctcagcacagtagcacccagcacacaat----aaatatttaaATAGGAA-----ACAAAAAAAGA---------------------------------------------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10135847 2123 +  10928107 TCAAGACTGAGTCCAATCTAAGTAATATAGACAGAACTACCAGCACTGTATCTGAccccattttacagaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GGCAGTGAGAACAC----CATCGCCAAC-TCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAGCCATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGGC-------------------------AACAAAAATGCTTATAAGGCATCTGAAACTGTAGTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGTATTTACTTCTACTGTCCCCTATCTATATTATCTGTACTACTCTATCTATAGTAT-----------CCCCTACCTATTCTAATTCATTTGCCAACTCCAC-TTAGCATGAAGACCACACGCATCATACATGGCTGTAGATAAGGAACGTGAGATGCAAAAATTAA--CTGAGGCAATGTTTCATAGATTCATCATGGCGT-GAATT---GAAAGCTGAcatgggtcagtggaaaaaatacaggagcta----cagtcagatctgaattaaaatcctatctct----gctaattactaCTTAAAAACTTT-----TTAAG-------TTA----TTAATTTTGAGATATCATACATCAAAGTACATAAATGA-CACCGTTTAAGGGC--TAAAGAAAGCAC-CCCGCGTAGGTAAAGAAACAGAACACTGCCAGGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGTACTCTTGGAGTAGCTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGCAATGTATTGCTCAATGGGTCTTCAAAGTATCCTCTATCCTGTTAAGGATGAG-AACTCTACAAATGTCCACAATGATCTCCACTCCTCCCCTCATCCCATCTCCCAGCCTGCATTCCAGGGGACAGGCATCCC----ATAGATATTG-TACCCTCCTTCCCCTTGGAGACACACAGGCAACTCCAC--CCACAACTCCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGGAAGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACAACTAAAAGCATGCCAGCAAAAC----ACAATATAATGAACAGAAATATATCCAGCTCTGAGACCTGGCCACAAGGGCCCTGTTAGAGGAAGTTACAG----GCTGACTGAAGACCAGAGTTCCTGGTGTTACAGTAGCAGCAAAACTGCTGGGTTCTGCTACCCAGGCTTA---AAAGGTCAATGCCAGCACTTGGGAAATTGT--CACTGGGGACCCTGGTCACAGCTGCTATTAATGCCTGGATAAACCTA--------------------CAGCACAGTTAGAAATCCCAAACCATACTTCATCTTTACTGCCTGACAATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACACGGTTAAGCCCATTCTTTGACTT-----aaacttgggatgaaaccc--tgtgtctgacacctcttgtatacgtctgtgagctctgggaagctcacttagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaactatttcataacgttgttaggacagctcaatcatt-agataccagacggaaagagctcagcacagtagcacccaggacacaat----aaatatttaaATATGAA-----ACAAAAAAAGA---------------------------------------------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17208282 2124 - 121039945 CCAAGACTGAGTCCAGTCTAAGTAATATAGACAGAACTACCAGCACCGTATCTGAccccattttacagaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GGCAGTGAGAACAC----CATCGCCAACTTCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAGCCATTCTATTCACTGC-ACATTCAGCTTG-GGAGATTTGGC-------------------------AACAAAAATGCTTATAAGGCATCTGAAACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCATCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTACTCTATCTATAATAT-----------CCCCTACCTATTCTAATTCATTTGCCAACTCCAC-TTAGCATGAAGACCACACGCATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAA--CTGAGGCAATGTTTCATAGATTCATCATGGCAT-GAATT---GAAAGCTGAcatgggtcagtggaaaaaatataggagcta----cagtcagatctggattaaaatcctatctct----gctaattactaCTTAAAATTTTT-----TTAAG-------TTA----TTACTTTTGAGATATCATATATCAAAGTACATAAATGA-CACCATTTAAGGGC--TAAAGAAAGCAC-CCCGTGTAGGTAAAGAAGCAGAACACTGTCAGGACCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGTACTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTACTGCTCAATGGGTCTTCAAAGCAT-CTCTATCCTGTTAAGGGTAAG-AACTCTACAAATGTCCACAATGATCTCCACTCCTCCCCTCATCCCATCTCCCAGCCTGCATTCCAGGGGACAGGCATCCC----ATAGATATTG-TACCCTCCTTCCCCTTGGACACACACAGGCAATTCCAC--CCACAACCCCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGAGCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGGAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACCACTAAAAGCATGCCAGCAAAAT----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTTGCCACAAGGGCCCTGTTAGAGGAAGTTACAG----GCTGACTGAAGATTAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTTCTACCCAGGCTTA---AAAGGTCAATGCCAGCACTTGGGAAACTGT--CACTGGGGACCCTGGCCACAGCTGCTATTAATGCCTGGATAGACCTA--------------------CAGCACAGTTAGAAATCCCAAAACATACTTCATCTTTACTGCCT----ATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACAACCTCACGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCTTGAACTTGAAATGTTTAGGATGGAAGGAGAATGACATGGTTAAGCCCATTctttgacttaagacaaacttgggatgaaaccc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaactatttcataacattgttaggacagctcaataatt-agataccagatggaaagagctcagcacagtagcacccagaacacaat----aaatatttaaATATGAA-----ACAAAAAAAGG---------------------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106689939 2139 - 170124641 TCAAGACTGAGTCCAATCTAAGTAACAT----AGAACTACCAGCACTGTATCTGAccccattttacagaagaggtaactgc-agcccggagaagcaaagagacccgcATGTGATTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCAAGAACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGAG-----------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAGCCATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGGC-----------aaaaaaaaaaaaaaaaaaaaaaTGCTTATAAGGCATCTGAAACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTTCTACTATTCCCTATCTATATTATCTGTACTACTCTATCTATAATAT-----------CCCCTACCTATTCTAATTCATTTGCCAACTCCAG-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAA--CTGAGGCAATGTTTCATAGATTCATCATGGTGT-GAATTAAAAAAAGCTGAcatgggtcagtggaaaaaatacaggagccacagtcagtcagatctggattaaaatcctctctca----gc--attactaCTTTAAAATTTT-----TTAAG-------TTA----TTGCTTTTGAGATATCATACATCAAAGTACATAAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-CCCATGTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGTATTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTCAAAGCATCCTCTTTTCTGTTAAGGATGAG-AACTCTACAAATGTTCACAATGGTCTCCACTCCTCCCCTCATCCCATCTCCCAGCCTGCATTCCAGGGGACAGGCATCCC----ATAGATATTG-TACCCTCCTTCCCCTTGGACACACACAGGCAACTCCAC--CCACAACCCCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGCACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGGAAGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAAGCAA----GACCACTAAAAGCATGCCAGCAAAAC----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCACAAGGGCCCTGTTAGAGGAAGTTACAG----GCTGACTGAAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAACTGT--CACTGGGGACCCTGGTCACAGCTGCTATTAATGCCTGGATATACCTA--------------------CAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG-CTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGGATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATATCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGCTTAAGCCCATTctttgacttaagacaagcttgggatcaagtcc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcactgagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaactatttcataacattgttagg-cagctcaataatc-agataccagatggaaagagctcagcacagtagcacccagcacatcat----aaatatttaaACATGAAACAT-AAAAAAAAAGA---------------------------------------------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108423540 2134 - 171882078 TCAAGACTGAGTCCAATCTAAGTAACAT----AGAACTATCAGCACTgtatctgaccccattttacagaagaggtaactgc-agcccggagaagcaaagagacccgcATGTGATTGTCCTTTTAGAAAGGCAGCCTTAACAGATAAAACCAATG----GGCAGCGAGAACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAGCCATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGGC-------------aaaaaaaaaaaaaaaaaaaaTGCTTATAAGGCATCTGAAACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTTCTACTATTCCCTATCTATATTATCTGTACTACTCTATCTATAATAT-----------CCCCTACCTATTCTAATTCATTTGCCAACTCCAG-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAACGTGAAATGCAGAAATTAA--CTGAGGCAATGTTTCATAGATTCATCATGGTGT-GAATTAAAAAAAGCTGAcatgggtcagtggaaaaaatataggagccacagtcagtcagatctggattaaaatcctctctct----gctaattactaCTTTAAAATTTT-----TTAAG-------TTA----TTGCTTCTGAGATATCATACATCAAAGTACATAAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-TCCATGTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGTATTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATAGGTCTTCAAAGCATCCTCTTTTCTGTTAAGGATGAG-AACTCTACAAATGTTCACAATGGTCTCCACTCCTCCCCTCATCCCATCTCCCAGCCTGCATTCCAGGGGACAGGCATCCC----ATAGATATTG-TACCCTCCTTCCCCTTGGACACACACAGGCAACTCCAC--CCACAACCCCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGCACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGGAAGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAAGCAA----GACCACTAAAAGCATGCCAGCAAAAC----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCACAAGGGCCCTGTTAGAGGAAGTTACAG----GCTGACTGAAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAACTGT--CACTGGGGACCCTGGTCACAGCTGCTATTAATGCCTGGATATACCTA--------------------CAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG-CTGCCAATTTGTTTATTAGAATAATTCCCACCTTTCTAATGC-------------TATAGGATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATATCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGCTTAAGCCCATTctttgacttaagacaagcttgggatcaagtcc--tgtgtctgacacctcttgtatacgtctgtgagctctgggaagctcactgagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaactatttcataacattgttagg-cagctcaataatc-agataccagatggaaagagctcagcacagtagcacccagcacatcat----aaatatttaaACATGAAACAT-AAAAAAAAAGA---------------------------------------------
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             107962 2153 +    130206 TCAAGACTGAGTCCAATCTAAGTAACAT----AGAACTACCAGCACTGTATctgaccccattttacagaagaggtaACTGC-AGCCCGGAGAAGCAAAGAGACCCGCATGTGACTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCGAGAACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAGCCATTCTATTCACTGC-ACATTCAGCTCG-ggagatttggggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgcttataagGCATCTGAAACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTtctactatcccctatctatattatctgtactactctatctataatat-----------cccctacctattctaATTCATTTGCCAACTCCAC-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAACgtgaaatgcaaaaattaa--ctgaggCAATGTTTCATAGATTCATCATGGTGT-GAATTTAAAAAAGCTGACATGGGTCAGTGGAAAAAATATAGGAGCCACAGTCAGTCAGATCTGGATTAAAATCCTATCTCT----GCTAAttactactttaaaatttt-----ttaag-------tta----ctgCTTTTGAGATATCATACATCAAAGTACATAAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-CCCGTGTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGTATTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTCAAAGCATCCTCTTTTCTGTTAAGGATGAG-AACTCTACAAATGTCCACAATGGTCTCCACTCCTCCCCTCATCCCATCTCCCAGCCTGCATTCCAGGGGACAGGCATCCC----ATAGATATTG-TACCCTCCTTCCCCTTGGACACACACAGGCAACTCCAC--CCACAACCCCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGGGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAAGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGGAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACCACTAAAAGCATGCCAGCAAAAC----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCACAAGGGCCCTGTTAGAGGAAGTTACAG----GCTGACTGAAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAACTGT--CACTGGGGACCCTGGTCACAGCTGCTATTAATGCCTGGATATACCTA--------------------CAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG-CTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATATCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-Caatgtac------ccctgaacttgaaATGTTTAGGATGGAAGCAGAATGACATGCTTAAGCCCATTCTTTGACTCAAGACAAGCTTGGGATCAAGTCC--TGTGTCTGACACCTCTTGTATATGTCTGTGAGCTCTGGGAAGCTCACTTAGCT---TCTCTGACCCTCT---ATTTTCTCACTGGCATCTAGGGTGGAGTATCAACTATTTCATAACATTGTTAGGACAGCTCAATAATC-AGATACCAGATGGAAAGAGCTCAGCACAGTAGCACCCAGCAcatcat----aaatatttaaacatgaaacat-aaaaaaaaaga---------------------------------------------
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21112703 2149 -  24206276 TCAAGACTGAGTCCAATCTAAGTAACAT----AGAACTACCAGCACTGTATCTGAccccattttacagaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCGAGAACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAGCCATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTCGGA-------CaaaaaaaaaaaaaaaaaaaaaaaaCCGCTTATAAGGCATCTGAAACTGTATTCTTATTTTGGGGTAATTTCTTACTGTT------------AATCCCACCTGTATGTACTTCTTCTATCCCCTATCTATATTATCTGTACTACTCTATCTATAATAT-----------CCCCTACCTATTCTAATTCATTTGCCAACTCCAC-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAA--CTGAGGCAATGTTTCATAGATTCATCATGGTGT-GAATTAAAAAAAGCTGAcatgggtcagtggaaaaaatataggagccacagtcagtcagatctggattaaaatcctatctct----gctaattactaCTTTAAAATTTT-----TTAAG-------TTA----TTGCTTTTGAGATATCATACATCAAAGTACATAAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-CCCGTTTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGTACTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTCAAAGCATCCTCTTTTCTGTTAAGGATGAG-AACTCTACAAACGTCCACAATGGTCTCCACTCCTCCCCTCATCCCATCTCCCAGCCTGCATTCCAGGGCACAGGCATCCC----ATAGATATTGTTACCCTCCTTCCCCTTGGACACACACAGGCAACTCCAC--CCACAACCCCCCTTTCCCGAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGGAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTTAAGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACCACTAAAAGCATGCCAGCAAAAC----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCACAAGGACCCTGTTAGAGGAAGTTACAG----GCTGACTGAAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAACTGT--CACTGGGGACCCTGGTCACAGCTGCTATTAATGCCTGGATACACCTA--------------------CAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG-TTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAAAGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACTTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGAAGGAAGCAGAATGACATGCGTAAGCCCATTctttgacttaagacaagcttgggatcaagtcc--tgtgtctgacacctcttatatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaactatttcataacattgttaggacagctcaataatc-agataccagatggaaagagctcagcacagtagcacccggcacatcat----aaatatttaaACACGAAACATAAAAAAAAAAAA---------------------------------------------
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22249047 2128 + 158406734 CCAAGACTGAGTCCAATCTAAGTAACAC----AGACCT-CCAGCACTGTATCTGAccccattttacagaggaggtaactgc-agcccagagaagcaaagggacctgcTTGTGACTGCCCTTTTAGAAATGCAGCCCAAACAGATAAAACCAGTGGGCAGGCAGTGAGAACAC----CAACGCCAACTTCCATGTTGTAGGACAGGCTGAAAGGCA-----------------------------------------ATCACA--ACCAATGTTGCCAGTCCTGGGTAT-GG-----GAAGAGAAGAGAGTGAGAAAATAAGCCATTCTATTCACTGC-ACATTCAGCTCA-GGGTATGTGGC------------------------AACAAAAAATGCTTACGAGGCATCTGAAACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTACTCCATTTATAATAT-----------CCCCTACCTATTCTAATCCATTTTCCAACTCTAC-TTAGCATGAAGGCCACACACATCATACATGGCTATAGATAAGGAATGCGAAATGCAAAAATTA------AGGCAATATTTCATAGATTCATCATGGCAT-GAACT---GAAAGCTGGCATGggtgagtggaaaaaatataggagcta----cagtcagatctgaattaaaatcctacctct----gctaagtact--TTAAAAATTtt-----ttaag-------ttattacttaattttgagatatcatacatcaaagtacataaacga-cactgtttaaaggctataaagaaagtac-cccat-tacgtaaagaaacagaacactgccagggccctcaaaTTTACTTTTAAAATTAAGTGTTTTTCAGTACTCTTGGAGTAACTAGTAAAATGAAAGTCCTGAGCTCAGGTCCTGTAATGGATTTCTCGATGGGTCTTCAAAGCATTTTTTATCCTGTTAAGGATGAGAAACTCTACAAATGTCCACAATAGGTTCCATTCCTCCCCTCATCCCACCTCCCAACCTACATTCCAGGGGACAGGCATCCC----ACAGATATTG-TACCCTCCTATCCCTTGGAGACACACAGGCAACTCCAC--CCACAACCCCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCCGAGTCAGAGGGACTGCTAGATCGAGAGTCCAGGATAGGCCGGGTGTCCAGGCGTGATCCTCTAACAGAGGGTGCTGGAAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGGAAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGCAGCATGCTCAGTACTAGGAGGACAA-----------------------------------AA-AAGGAAACCTCACGACCTCTTAAGTTTTCTTTGCAGCCAGCAG--CCTCTTTCTTTTCCCACAGCCACCCAACAAGAGACACCAAAAGCAA----GACCACTAAAAGCATGCCAACAAAAC----AGAATATAACGAACAGATATGTATCTGGCTCTGAGACCTGGCCACAAGGGAC-TGTTAGAGGAAGTTACAG----GCTGACTGAAGACCAGAGTTCCTGCTATTACAGTAGCAGCAAAACTGCTGGGTTCTGCTACACAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAACAGT--CACTGGGAACCCTGGTCACG---GCTATTAATGTATGAATACACCTA--------------------CAGCACAGTTAAAAATCCCAAACCATACTTCATCTTTACTCCCTGTCAATTTGTTTATTAGAAG---TCCCACCTTTCTGATGCTATATAGCTAAAATACAGAATTTCAGGCCACATCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATACAAACTTCTAGCATATGCAGATTCTCTT-CTATGCAC------CCCCGAACTTGAAATGTTTAGGATGgaagcagaatgacatgg-taagcccattctttgagttaagacaaacttgggatgaaatcc--tgtgtctgacaccacttgtatatggctaagagctctgggaagctcacttagcc---tctctgatccttc---attttctcactggcatctagggtggagtaccaactatttcataacattgttaggacagttcaataatt-agacagcagatggaaagagctcaccagagtagcacccagcacacaat----aaatatttaaATATGAAACA--TAAAAAAAACA---------------------------------------------
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81360547 2117 + 145441459 CCAAGA-TGAGTTCTATGTAAGTAATGA----AATGGAGCAAGTACCTTG--TGAACTTA--TCACACAGGGTGTAACCTCAAGTCCAGAGAAGTAAAGGG-CATGATTGTAGCTGTCATTTTAGAAAC-TAGTCTGGACAAGGTAAATGTGTG----GGCAACAGGGACACTAATTAATGCCAGTGTTCAAAGTCCAGGATGG--TGGAAGCTG-----------------------------------------ACCACAGGGTGGGTTCTGAAAGTCATGAATGGGTGACCTCGAAGGTAAGATGA-GGAGAAATGAGCCCTCCTGTTCAATTCAACATTTAGCTCA-CGGCATTTAGT--------------------AACTGAAAAGCAAAGTTGAGGTGTTATCTTAAACTG-AATCTTATTTCAGGAAATTGTCTCATTGCCTCTTTCCCTTCAAGACACGCACGTAATTACTTTTAC---CCTCCAGCTATACTGTCTATGCTAGCCTATATATGTTATTTATACCATCCTCCTCACCCACCCTAGCCCATTTCCTAACTCTAA-TTAACATGGAACCTGCACATGTCAC-CTTGACTGTAGGTAAAAA---TAGGATATATAAATTTG--GTG------------ATAGTTTCA-----------GACT---GTGAGTTGTCATGGGTCAGT-GCAAAAGTACAGGAGCTG----GAGTCACATCTACACCACAATCCCAGTGTTAATGGTTAATTATGACTTATTAATGTCAGGTATTAAAACACTACTTA----TGAACTTTGGGACATTATACACAGAGGtatataaataa-tattttttaaaGAC--TAAAAAGAAAACATCCATGTACTTCAAGAAACAGAACACTGACAAGATGCTCATATTTAC-TTTGAAATCTACTGTTCT--------------ATAACAAGTAAAA----GATACTGGACT------CTAACATACATTTCTC-ATGGACATTCAAAGTGTCTCTGAGTTTGCTAAGAGTGAACAGCCACACAAAGGTGCCTGATGGCCTC---TCTTGCCTGCATCCTACTCTGAGGCACCCCTTTCA----------ATCTCTAAGACAGATACTG-TAGCAT-CTTCCCCTAGG----ATACAGATAACTCCACCTCCACACCCCCCAACTCCTGAGCACATTACATACAATCAAATCTGAGAGATGGTCTGATCCAGAGCTGAAGCCACTCGTGTCTGAGTCAGAGGGGCTGCTAGAACGGGAGTCCAGGATGGGCCGGGTGTCCAGGCGAGATCCTCTAACTGAGGGTGCTGGGAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGACAGGAAGCTCAAGGGGGCTTTTCCTAAGACATTTCCCAGTGGATTTTGGAGCATGCTTAATACTAGGGTGACaaaaaaaaaacaaataaataaataagaagaagaaaagaa-aaggaaTGCTCATAACCTCTT----TTTCTTTCCAGACCAGGC--CCTTTTTTCCCTCCCATAATCACCC--------------AAGGCAGATTTAACCTCTAAGAGCATTTCAGAGACAC----AGAACATAATGTACAGGTAACTG-ATGGTTTGGAAAGCTGGTCACTCAGTCCTCGTTA---GAAGTTACAG----GATGACTGACCACCAGAACTCTTCCTACTAAAGCAACAGCAAAACTGTT---CTCAGCCAC-CAGGCTTAATTAAGGAGTAGTGCTACCATCTGAGGCTCTGC--CACTGGGAACTTTGGTTATAGTTGCTATTAATGTCTGGATACACCTG--------------------CAGTACAACTGGGAAGTCAAAACCATATT---CCTTCACTGGCTCTCAGTGTGTTTACTAGA----TTCTCGCTTTTCTAGTGACATTTTGTTAAAACACAGAATTATGTGTAACGTACCATAGA-CTAATCTAGCATAAGCATGTCTCATC----TAGAAGTTCTCTTCTGAAAACTTCTAGCATGCACAAGTTTTCT----ATGCAG------CCCCAAATTTCAAATATTTGGGATGGGAGCAGAATGATCTCATTAAGTTCACTACCTGAG--GAAACAAACCTGGCATGAAACCC--CTGGTATGAAACCTCTTTCGGATGGCTGT-AACTCTGAAAAGCTCACCTGGATGTGTCTTTTAGCCTCCTAATTCTTCTCACTGGCCTCTTGAGTGAAATACCAACTATTTCATAACACTGCTAGCCAGGTTCAATAATC-AGACAGCAGATAAAAAGTGCTCAGCAAA--AATGCCCAACTCATAATAAACAAATACCTAACTTCAAA-----AAAAAAAAAAA---------------------------------------------
i mm10.chr7                 C 0 I 380
s canFam3.chr3               54417742 2141 +  91889043 ccaggcatgccCCCATCTGAATTAACATAAGCAGAACCCCAAGCA-----tccaaccctattttataggggagtaaactac-agtccagagaatcaaaaggacctgcTTGTTATTACCCATCTGGAAACATAGCCT-AACAGATAAAACCAACA----AGCAGTGGGAACAC---------CTAGCTTTCATATTCTAGGACAGGCTGACAGGAGACAGACAGACCCTAAAAGTTCACGCTCTGGATAGTAAACTAACCACA--TCCAAAGGTACCAGTCCTGGATATAGA-----AGAGAAAAG-----GGCAAGAAAAGCCATCCTATTCACTGA-ATGGTCACCGGACAGGGGTTTGGC-----------------------AGGGGAGAAAGGCTCAGAAGGCACCTGAAATTGTATT-TTATTTTATGATAATTTCTCATAGTC------------ATTCCCA--TGTATTTACTTCCACAGTCTCCTA------------------------------TAT-----------CCCTCATCTATTCTCATCCATTTGCTAATCCTACTTTAGCACATGTGCCTCACCTGTCACACATGGCTGTGGATAAAGAGCATGTGCTATATAAATTAACTCTGAGGCACCAGTTCATACATTCATCATGGCCTCAAACT---gacaggtggcatgggtaggtaaagaggataaaggagctacagtcagcctgactgggtttaaaattctggctct----gataattactaatgcatgatttt-----TAAAATCTTCCCTTA----GAAATTTTGAGATAACACATGTAAAGGTACATAAATGGTTACTGTTTCAAGGC--TAAAGAAAAT-C-ACCAAGCAGGCCAAGAAACAGAACAATGCAAGAACTCCCATATTAACTTTTGAAATTAAC--TTTCTCAAAGCTCTTGAAGTAACTTGTAAAAAGAGACTCTGCTGCTTGGGTCCTGAAATGTATGGCTTGAGGAGTGTATAAGGCACCCTCTATTCCGTAGAGAATAAG---TTCCATACACGTTCGCAGTGGTCTCCACCACTTCCGTCATCCCACCCCCCA-CCCATGTTCTGGGGGACACACATCCC----------CTTG-AAGCTCACTTGCCC-------CGCCCACCTAACTCCGT---------------------GACAAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAACTGAAGCCACTTGTGTCTGAGTCAGAGGGGCTGCTAGACCGAGAGTCCAAGATGGGCCGGGTGTCCAGGCGGGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAGGTCAGATCCAAGGGGGTCCAGAGGCAGGAAGCTCAAGGGGGGTTTCCCCAGGACATTGCCCAGTGGGTTGTGAAGCACACTCAGTACTAGAAGAAAAA-----------------------------------AATAAAGAAGTCTCATGACCTCCT-TGTTTTCTTC----CCAACAGTCCTTCCCTTTTCTCCCACAGCCGCCCAATAAGATACA-CAAAGGCAC----AATCACCAA-AGCACGACAGAACCACAGTGAGAGTAGAACGAGCAGATAA------------------TGGCCAACCAGG--------GAGGCAGTTCCAGGACAGCTATCTGAAGACCAGAGTACTTGCTG---CAATAGCAGCAAAACTGCT---CTGTGTCACCCAGACTG----CAGGGTCAGT------ATTTGGGAAGCTGTGCCAGCAGGAACCCTGGTCACAACTGCTCTTAACATCTGGGTACACACATTGTACAAAGGAGACACATTCAACACAGTTAGGAAGCCCAAACCACGGTCCTTCCTGCCTGCCTGTCAACATATCTATTCAAAGAATTC-CACCTTTCTAACACTATATAGCTA-TACACAGAATTTCATGCCATGTTCCACAAGTCTGTTTCAACATGAGCACACCAGCTTCTCTGTGAAGCTCCGTCATGCCAAGTCCTTGCACGTACACTCTCTCCTGTCCTGTACAGACTGTCTCCAGCTTCAGACACTGA-GATGGAAGCAGGACAGTGTGATTAAGCCC--Cctttggctaaagacaaacctgggctggaaccccacacgtctgacaccacctctctaaggctgtgtgctccgagaagctcgtggagct-------------ccc---attttctca-tgacatcttgtgtggaataccaactgtttcatagctttgtcaggagggttcgataattaagaaagcacatgcaaaatgctcagcagagcagtgcctggtacacaat----aaatatttaaATACCAAACAT-CAAAAACAAGTGAAGCAAAGGCCAGAAGAGGTAAGGGAGGTAAAGTGGACAGAAGA
i canFam3.chr3              I 562 C 0

a score=98671.000000
s hg38.chr15_KI270850v1_alt    347926 29 +    430880 GCAACGTTTTCCACACTTGGCCT-------TGGGGA
s panTro4.chr15              80129538 29 +  99548318 GCAACGTTTTCCACACTTGGCCT-------GGGGGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10137970 29 +  10928107 GCAATGTTTTCCACACTTGGCCT-------TGGGGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17210406 29 - 121039945 GCAACGTTTTCCACACTTGGCCT-------TGGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692078 29 - 170124641 GCAACATTTTCCACACTTGGCCT-------TGGGGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108425674 29 - 171882078 GCAACATTTTCCACACTTGGCCT-------TGGGGA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110115 29 +    130206 gcaacattTTCCACACTTGGCCT-------TGGGGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21114852 29 -  24206276 GCAACGTTTTCCACACTTGGCCT-------TGGGGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251175 29 + 158406734 GCAACATTTTCCACACTTGGCCT-------TGGGGA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54419883 36 +  91889043 GGACATTTTTCTATCCTTGGCTTGAAGACATAAGGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81362664 380 + 145441459 I

a score=500344.000000
s hg38.chr15_KI270850v1_alt    347955 144 +    430880 -ACCTAAG-CAAAGCACACCCTCTATCTATGAGAATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-------TTT-----TTTTTTTTTTTCATC---TGAAGAAT---GAGAACATTCACCTC
s panTro4.chr15              80129567 143 +  99548318 -ACCTAAG-CAAATCACACCCTCTATCTATGAGAATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-------TTT-----TTTTTTTTTT-CATC---TGAAGAAT---GAGAACATTCACCTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10137999 143 +  10928107 -ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-------TTT-----TTTTTTTTTT-CATC---TGAAGAAT---GAGAACATTCACCTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17210435 140 - 121039945 -ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-------TTT-----TTTTTTT----CATC---TGAAGAAT---GAGAACATTCACCTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692107 148 - 170124641 -ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATGAAGAATAAGAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-------TTGGTTTTTTTTTTTTTT-CATC---TGAAGAAT---GAGAACATTCACCTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108425703 145 - 171882078 -ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATGAAGAATAAGAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-------TTG---TTTTTTTTTTTT-CATC---TGAAGAAT---GAGAACATTCACCTC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110144 143 +    130206 -ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATGAAGAGTAAGAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAatttgaag-------ttg-----tttttttttt-catc---tgaagaAT---GAGAACATTCACCTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21114881 145 -  24206276 -ACCTAGG-CAAAGCACACCCTCTATCTATGAGGATGAGGAATAAGAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-------TTG---TGTTTTTTTTTT-CATC---TGAAGAAT---GAGAACATTCACCTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251204 148 + 158406734 -ACCTAAGACAAAGCACACCCTCTATCCATGAGGATGAGGAATAAGAGGATTTTGCCATGGAGCTATG-----------GTGCTAAATCCAGGGAAGAAGCTTTAATTTAATGGCTTTTTTTT-----TTTTTTTTTT-CATC---TGAAGAAT---GAGAACATTCACCTC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81363044 134 + 145441459 -ACCTGAG-AGAACTGAATCTTTCATCTACAAGGACAAAGAATAAAAGGGCTTTACTATGAAG-TATGGAC--------GAATTAATTTTAAGATAGAAGC-----TTTGACA-------TTT-----------TATT-CATC---TGAAGAATAAAGAAGACATTTGCCTT
i mm10.chr7                 I 380 I 235
s canFam3.chr3               54419919 148 +  91889043 ATCCAAAG-GAAAATACATCTCTTATCCATGAGAATAAGGAATAAAAGGGCTTTTCCATGGAGC-ATGGGCTTTCCCCAGCACGAAGGCTAGGGAAGGAGCGCTCATCTGATA-------ATG-----------TTTT-CATCCCATGACAAGG---GAGCATGTCCACCTC
i canFam3.chr3              C 0 C 0

a score=107107.000000
s hg38.chr15_KI270850v1_alt    348099 27 +    430880 AAAATGGCTG--AGGTAAAACCAAAATCA
s panTro4.chr15              80129710 27 +  99548318 AAAATGGCTG--AGGTAAAACCAAAATAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10138142 27 +  10928107 AAAATGGCTG--AGGTAAAACCAAAATAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17210575 27 - 121039945 AAAATGGCTG--AGGTAAAACCAAAATAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692255 27 - 170124641 AAAATGGCTG--AGGTAAAACCAAAATAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108425848 27 - 171882078 AAAATGGCTG--AGGTAAAACCAAAATAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110287 27 +    130206 AAAATGGCTG--AGGTAAAaccaaaataa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21115026 27 -  24206276 AAAATGGCTG--AGGTAAAACCAAAATAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251352 27 + 158406734 AAAATGGCTG--AGGTAAAACCAAAATAA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81363413 17 + 145441459 AAAATG------------AACCCAAATAA
i mm10.chr7                 I 235 C 0
s canFam3.chr3               54420067 29 +  91889043 AAAATGGCTGTTAGGTGAAACCAAAGTAg
i canFam3.chr3              C 0 I 378

a score=834007.000000
s hg38.chr15_KI270850v1_alt    348126 241 +    430880 TATGTGTAAGTGCTGAATAA---CTGGCTGTGATTGGC-CCCACTTCCGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGGTTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCTG----GAGTCCCAAGAAGCAGGAATAAACCTCT-CAAGAC-TGAAATCAAAATCAATGCATGCTTTCAGGGTACGAGACACACATGCCAT-------------TGATGGAACA-TATACACAAGATCC
s panTro4.chr15              80129737 241 +  99548318 TATGTGTAAGTGCTGAATAA---CTGGCTGTGATTGGC-CCCACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGGTTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCTG----GAGTCCCAAGAAGCAGGAATAAACCCCT-CAAGAC-TGAAATCAAAATCAATGCATGCTTTCAGGGTACCAGACACACATGCCAT-------------TGATGGAACA-TATACACAAGATCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10138169 241 +  10928107 TATGTGTAAGTGCTCAATAA---CTGGCTGTGATTGGC-CCCACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACGCAGAGCTGGTTTCCTCCCCAGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCTG----GAGTCCCAAGAAGCAGGAATAAGGCTCT-CAAGAC-TGAAATCAAAATCAATGCATGCTTTCAGGGTACCAGACACACATGCCAT-------------TGATGGAACA-TATACACAAGATCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17210602 241 - 121039945 TATGTGTAAGTGCTCAATAA---CTGGCTGTGATTGGC-CCCACTTGAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGGTTTCCTCCCAGGCTTCTAAGTCAGTTTGAATGCTTGTCTGGAGCTG----GAGTCCCAAGAAGCAGGAATAAACCTCT-CAAGAC-TGAAATCAAAATCAATGCATGCTTTCAGGGTACCAGAAACACATGCCAT-------------TGACGGAACA-TATACACAAGATCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692282 241 - 170124641 TATGTATAAGTGCTCAATAA---CTGGCTCTGATTGGC-CCCACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCTG----GAGTCCCAAGAAGCAGGAATAAACCTCT-CAAGAC-TGAAATTAAAATCAATGCATGCTTTCAGGGTACCAGACACACATGCCAT-------------TGATGGAATA-TATGCACAAGATCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108425875 241 - 171882078 TATGTATAAGTGCTCAATAA---CTGGCTCTGATTGGC-CCCACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCTG----GAGTCCCAAGAAGCAGGAATAAACCTCT-CAAGAC-TGAAATTAAAATCAATGCATGCTTTCAGGGTACCAGACACACATGCCAT-------------TGATGGAATA-TATGCACAAGATCC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110314 241 +    130206 tatgtataagTGCTCAATAA---CTGGCTCTGATTGGC-CCCACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCTG----GAGTCCCAAGAAGCAGGAATAAACCTCT-CAAGAC-TGAAATTAAAATCAATGCATGCTTTCAGGGTACCAGACACACATGCCAT-------------TGATGGAAGA-TATGCACAAGATCC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21115053 241 -  24206276 TATGTATAAGTGCTCAATAA---CTGGCTCTGATTGGC-CCCACTTCAGCCCTGACTAGCAATGAAACGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCTG----GAGTCCCAAGAAGCAGGAATAAACCTCT-CAAGAC-TGAAATTAAAATCAACGCATGCTTTCAGAGTACCAGACACACATGCCAT-------------TGATGGAACA-TATGCACAAGATCC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251379 234 + 158406734 TATGTGTAAATGCTCAGTAA---CTAGCTGTGATTGGT-CCCACTACAGCCCTGACTAGCAATAAAATTAA--ACAGGTCACTCA-----GGTTTTCTCCCAGGTCTCTAAGTCAGTCTGAATGCTTGTCTGGAAATG----GAGTCCCAAGAAGCAGGAATAAATCTCT-CAAGCC-TGAAATCAAAGTCAATGCATACTTTCAGGGTGCAAGACACACATGCCAC-------------TGATGGACCA-TATGCATAAGATCC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81363430 209 + 145441459 CA----CAAGTATTCGACAG----TGAGTATAACTGTCTCCTACTACAGCTCTGACTAGCAAGTAAGTG----ACAAGCCACCCAGAGCTGGTTTCTTCCCAGATGTCTAAGC-----------------------------------------ACAAGAATAAACTTCTCCAAGTC-TGGAGACAAAGTCAAGTCAT-CACTTGTGGTACCCGACTAAC-TGCCATTCATGATAGACCATGACAGAACATTACACACAAGATTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54420474 244 +  91889043 tgtgtgtAGGGGCTCAATCAGCAGTGGCCACGTCTGGC-TCCCCTCCC-------CAGGTCACTGAGTAACACACAGGTC-TCCAGAGCTGACTTGGAACTGGGGTTCCAAGTCAGTCTGACCGACTGCTGGGGGCTGTGCTAGGTACCAAGAGGCAGGAATAAACCTCT-CCAAACATGAAGTCAAAGTGGAAGCCTGCTCTCGGGGCACCGCACACACGTACCATGCA----------CAACAGAGTG-CATGTGCCAGATGC
i canFam3.chr3              I 378 I 257

a score=315960.000000
s hg38.chr15_KI270850v1_alt    348367  97 +    430880 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACGCTCCTTTAGGTATATGACCTCCCCTTTTGGAT-AAGACATGGTAGGTGTATCCTTAACATTT--------
s panTro4.chr15              80129978  97 +  99548318 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACGCTCCTTTAGGTATATGACCTCCCCTTTTGGAT-AAGACATGGTAGGTGTATCCTTAACATTT--------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10138410  97 +  10928107 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGAT-AAGCCATGGCAGGTGTATCCTTAACATTT--------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17210843  97 - 121039945 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTGGGTGTATGACCTCCCCTTTTGGAT-AAGACATGGTAGGTGTATCCTTAACATTT--------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692523  97 - 170124641 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGAT-AAGACATGGTAGGTGTATTCTTAACATTT--------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108426116  97 - 171882078 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGAT-AAGACATGGTAGGTGTATTCTTAACATTT--------
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110555  97 +    130206 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGAT-AAGACATGGTAGGTGTATTCTTAACATTT--------
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21115294  97 -  24206276 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGAT-AAGACATGGTAGGTGTATTCTTAACATTT--------
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251613  97 + 158406734 CAAATGTGTGTTAATATGGGACCAGAGCAGCCCCACTCTCCTTTA-GTATATGACCTCCCCTTTTGGAT-AAGATACAGTAGGTGTATTCTTAACATTT--------
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81363639 101 + 145441459 AAAGTAGCTATTACTACAGCATCAGGCCAT-ACCATTATCC-TCAGGCATATGAC--CCCCTCCCAGATAAAGACACAGTA--TGTATGTTTAGCCTTCATTTCCTA
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54420718 257 +  91889043 I

a score=179950.000000
s hg38.chr15_KI270850v1_alt    348464 58 +    430880 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTATTATTTtgtagt--aaaaat
s panTro4.chr15              80130075 58 +  99548318 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTATTATTTtgtagt--aaaaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10138507 58 +  10928107 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTATTGTTTtgtagt--aaaaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17210940 58 - 121039945 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTATTATTTtgtagt--aaaaat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692620 58 - 170124641 AACACAGGGG--AAACTATAGATATATCTACTTATCTAGTTATTATTTtgtggt--aaaaat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108426213 58 - 171882078 AACACAGGGG--AAACTATAGATATATCTACTTATCTAGTTATTATTTtgtggt--aaaaat
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110652 58 +    130206 AACACAGGGG--AAACTATAGATATATCTACTTATCTAGTTATTATTTTGTGGT--AAAaat
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21115391 58 -  24206276 AACACAGGGG--AAACTATAGATATATCTACTTATCTAGTTATTATTTtgtggt--aaaaat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251710 49 + 158406734 AACGGAGGG---------TAGATATAT----TTGTCTAGTTATTATTTTACTGTGGAAAAAt
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81363740 57 + 145441459 AATGCAGGCA--ACATTGTGGATGCATTTATCCATTTA-TTAGTCTACTGTGGC--AAAAAT
i mm10.chr7                 C 0 I 249
s canFam3.chr3               54420975 52 +  91889043 aGTGCAGGGGGCATACTATGAGTATGTGTGTTTATTT--------TGTTCtggt--aaatat
i canFam3.chr3              I 257 C 0

a score=297661.000000
s hg38.chr15_KI270850v1_alt    348522 99 +    430880 agctttaatttttaaagagactgtcataatactgttttcc-aagtagatggaac--tatataccattttacattcccaccggcagtgatgagagtttcagtc
s panTro4.chr15              80130133 97 +  99548318 agctttaatttttaaagagactgtcataatactgttttcc-aagtagatggaac--tata--ccattttacattcccaccggcagtgatgagagtttcagtc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10138565 97 +  10928107 agctttaatttttaaagagactgtcataacactgttttcc-aagtagatggaac--tata--ccattttacattcccaccagcagtgatgaaagtttcagtc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17210998 97 - 121039945 agctttaatttttaaagagactgtcataatactgttttcc-aagtagatggaac--taca--ccattttacattcccaccagcagtgatgagagtttcagtc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692678 95 - 170124641 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaac--tata--ccattttatcttcccaccagcagt-atgagagtttcagtc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108426271 95 - 171882078 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaac--tata--ccattttaccttcccaccagcagt-atgagagtttcagtc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110710 95 +    130206 agctttaatttttaaagagactgCCATAATACT-TTTTCC-AAGTAGATGGAAC--TAta--ccattttaccttcccaccagcagt-atgaGAGTTTCAGTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21115449 97 -  24206276 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaactatata--ccattttaccttcccaccagcagt-atgagagtttcagtc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251759 97 + 158406734 atctttaatttttaaagagactgtcataatactgttttccaaagtagatgt-ac--tata--ccattttacattcccaccagcagtgatgagagtttcagtc
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54421027 88 +  91889043 acccttgatttttaaagacatggtc---acactggtttca-tagggga--------cata--ccatgttacattcctactagcgctgaagaggacttctatc
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81363797 249 + 145441459 I

a score=482931.000000
s hg38.chr15_KI270850v1_alt    348621 146 +    430880 cctctacaacctggccaacac-ctggtt--tggtcaatctttttatatctagccagtctaatatgtatgtaTG----TTGTGGGATGTGGGTGGGGTGGAGCCACAGCACATCCAGCAAGGA----GTTAGTTTAGCATTTTGTTTTTCAAGGAAAC
s panTro4.chr15              80130230 146 +  99548318 cctctacaacctggccaacac-ctggtt--tgatcaatctttttatatctagccagtctaatatgtatgtaTG----TTGTGGGATGTGGGTGGGGTGGAGCCACAGCACATCCAGCAAGGA----GTTAGTTTAGCATTTTGTTTTTCAAGGAAAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10138662 150 +  10928107 cctctacaacctggccaacac-ctggtt--tggtcaatctttttatatctagccagtctagtatgtatgtatgtatattgtggGATGTGGGTGGGGTGGAGCCACATCACATCCAGCAAGGA----GTTAGTTTAGCATTTTGTTTTCCAAGGAAAC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17211095 146 - 121039945 cctctacaacctggccaacac-ctggtt--tggtcaatcttcttatatctagccagtctaatatgtatgtaTG----TTGTGGGGTGTGGGTAGGGTGGAGCCACATCACATCCAGCAAGGA----GTTAGTTTAGCATTTTGTTTTTCAAGGAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692773 142 - 170124641 cctctacaacctggccaacac-ctggtt--tggtcagtctttttatatctagccagtctaatatgtatg--------tTGAGGGATGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGA----GTTAGTTTAGCATTTTGCTTTTCAAGGAAAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108426366 142 - 171882078 cctctacaacctggccaacac-ctggtt--tggtcagtctttttatatctagccagtctaatatgtatg--------ttgtgggatGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGA----GTTAGTTTAGCATTTTGCTTTTCAAGGAAAC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110805 142 +    130206 CCTGTACAACCTGGCCAACAC-CTGGTT--TGGTCAGTCTTTTTGTATCTAGCCAGTCTAATATGTATG--------TTGTGGGATGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGA----GTTAGTTTAGCATTTTGCTTTTCAAGGAAAC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21115546 142 -  24206276 cctctacaacctggccaacac-ctgatt--tggtcagtctttttatatctagccagtctaatctgtatg--------ttgtaggatGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGA----GTTTGTTTAGCATTTTGCTTTTCAAGGAAAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251856 137 + 158406734 tctctacaaccaggccaacac-ctggtt--tggtcagtctttttgtttctagctagcc----gtatacg--------ttgtgggatgCAGGTAGGGTAGAGCCACACCACATCCAGCAAGGA----GTTAGTTTAGCATTTT-TTTTTCAAGGAAAC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81364046 130 + 145441459 cctttgccactgagacatcgcaccggTTTGTGGTTACTTTTTT-----------ATTTTAGGATGTATATTAT----CTATGGGGCTCAGG-------GAGTCA-AACATATCCACAAAGGA----GTTAGTTTATTATTTTGCTTTTCAAAGAAAT
i mm10.chr7                 I 249 C 0
s canFam3.chr3               54421115 141 +  91889043 cctccacatcat-gccaacac-ttgcta--tagtccgtctttttaatcccagccagtctaatatgc-----------gtgTGTCCTGGGGGTGGGGGAG-TCTATACCACCTACAGCAAGGAATCTGTTCATTTATTACATTGTTTTTTAAGAAAAC
i canFam3.chr3              C 0 I 530

a score=452501.000000
s hg38.chr15_KI270850v1_alt    348767 138 +    430880 ATTCCTAACTTTGAAATTGCCTTTTGAAGCAGTTTTCAAAGCTCTAAAATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCATCAGAAATAATCCCTGACAAACTTCTCAAATAATCCTT
s panTro4.chr15              80130376 138 +  99548318 ATTCCTAACTTTGAAATTGCCTTTTGAAGCAGTTTTCAAAGCTCTAACATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCATCAGAAATAATCCCTGACAAACTTCTCAAATAATCCTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10138812 134 +  10928107 ATTCCTAACTTTGAAAGTGCCTTTTGAAGCAGTTTTCAAAGCTCTAACATTTAACTGTATGCTATAAC----TGTCTCAAAATGCTTGGAT--TGATAACCATCAGAAATAATCCTTGACAAACTTCTCAAATAATCCTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17211241 138 - 121039945 AGTCCTAACTTTGAAATTGCCTTTTGAAGCAGTTTTCAAAGCTCTAACATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCATCAGAAATAATCCTTGACAAACTTCTCAAATAATCCTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106692915 138 - 170124641 ATTCCTAACTTTGAAATTGCCTTTTGAAGCAGTTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCATCAGAAATAATCCTTGACAAACTTCTCAAATAATCCTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108426508 138 - 171882078 ATTCCTAACTTTGAAATTGCCTTTTGAAGCAGTTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCATCAGAAATAATCCTTGACAAACTTCTCAAATAATCCTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             110947 138 +    130206 ATTCCTAACTTTGAAATTGCCTTTTGAAGCAGTTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCATCAGAAATAATCCTTGACAAACTTCTCAAATAATcctt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21115688 134 -  24206276 ATTCCTAACTTTGAAATTGCCTTTTGAAGCAGTTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGC-TGGAT--TGGTAACCATCACAAATAATCCTTGACAAACTTCTCA---AATCCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22251993 140 + 158406734 ATTCGTAACTTTGAAATTGACTTTTGAAGCAGTTTTCAAAGCTCTAGCATTTAACTGTATGCTGAAACTAAGTGTCTCAAAATGCTTGGGTTCTGATAACCATCAGAAATAATCTTTGACAAACTTCTCAAATAATCATT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81364176 117 + 145441459 AGTC----TTTTACCCAGGCCTTTCAAAGTGGTTTTC-CAGTACTAGCACTTAACTGCATGCTGGAACTAAACGTCT----------------CAACACCCAGCACAAACACTCCTTGATAAGCTTCCCAG--GATCCTT
i mm10.chr7                 C 0 I 262
e canFam3.chr3               54421256 530 +  91889043 I

a score=859032.000000
s hg38.chr15_KI270850v1_alt    348905 294 +    430880 Tggtcgggtgtggtggctcacgcctgtaatcccagcactttgggaggttgagacaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccgtctctactgaaaatacaaaaattagccaggcgtgaaagtgcacgcctgtaatcccagctactcgggaagctgaggcacaagaattgcttgaacccaggaggc-agaggttgcagtgagccgagattgcgccactacactccagcctgggtgatagagcaagactctg---------------------aaaaaaaaaaGTTCC
s panTro4.chr15              80130514 294 +  99548318 Tggtcgggtgtggtggctcacgcctgtaatcccagcactttgggaggttgagacaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccgtctctactgaaaatacaaaaattagccaagcgtgaaagtgcacgcctgtaatcccagctactcgggaagctgaggcacaagaattgcctgaacccaggaggc-agaagttgcagtgagccgagattgcgccactacactccagcctgggcgatagagcaagactctg---------------------aaaaaaaaaaGTTCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10138946 295 +  10928107 Tggttgggtgtggtggctcacgcctgtaatcccagcactttgggaggttgaggcaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggtgaaaccccgtctctactgaaaatacaaaaatcagccaggcgtggaagtgcacacctgtaatcccagctactcgggaagctgaggcacaagaattgcttgaacccaggaggc-agaggttgcagtgagccgagattgcgccactacactccagcctgggcaatagagcaagactctg--------------------aaaaaaaaaaaGTTCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17211379 307 - 121039945 Tggtcagttgtggtggctcacgactgtaatcccagcactttgggaggttgaggcaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccctgtctctgctgaaaacacaaaaattagccaggcgtggaagtgcatgcctgtaatcccagctactcgggaagctgaggcacaagaattgcttgaacccagcaggc-agaggctgcagtgagccgagattgcgccactacactccagcctgggagacagagcaagactctg-tcta------aaaaa-aaaaaaaaaaaaaaGTTCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106693053 315 - 170124641 Tggccgggtgtggtagctcactcctgcaatcccagaactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcctataatcccagctgcttgggaagctgaggcacaaggattgtttgaacccaggaggc-agaggttgcagtgagccgagattgtaccactgcactccagcctgggcaacagagcaagactcttgtctaaaaaataaaaataaaaataaaaataaaTTCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108426646 315 - 171882078 Tggccgggtgtggtagctcactcctgcaatcccagaactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtgatgcacgcctataatcccagctgcttgggaagctgaggcacaaggattgcttgaacccaggaggc-agaggttgcagtgagccgagattgtaccactgcactccagcctgggcaacagagcaagactcTTGTCTAaaaaataaaaataaaaataaaaataaaTTCC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             111085 309 +    130206 tggccgggtgtggtggctcactcctataatcccagaactttgggaggctgaggcagttggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcctataatcccagctgcttgggaagctgaggcacaaggattgcttgaacccaggaggc-agaggttgcagtaagccgagattgtaccactgcgctccagcctgggcaacagagcaagactcttgtcta------aaaaataaaaataaaaataaattcc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21115822 309 -  24206276 Tggccgggtgtggtggctcactcctgtaatcccagaactttgggaggctgaggcaggtggctcacctgaggtcaggagtttgaaaccagcctacccaacatggcgaaaccccatctctactgaaaatacaaaaattagccaggcatggtggtgcacgcctataatcccagctgctcgggaagctgaggcacaaggattgcttgaacccaggaggc-agaggttgcagtgagctgagattgtaccactgcactccagcctgggcaacagagcaagactcttgtcta------aaaaataaaaataaaaataaaTTCC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22252133 305 + 158406734 Gggccaggcatggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtgaatcacctgaggtcaggagtttgaaaccagcctggctaacatggcgaaaccctgtctctaccaaacatacaaaaattagccaggcgtggtgacacacacctataatcccagctactcaggcagctgaggcacaggaattgcttgaacccagaaggcaagagattgcagtgagccgagattgcaccactgcactccagcctgggagacaaagcaagaccctg-----------tttaaaaaaaaaaaaaaaaaaaTCC
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81364293 262 + 145441459 I
e canFam3.chr3               54421256 530 +  91889043 I

a score=978496.000000
s hg38.chr15_KI270850v1_alt    349199 283 +    430880 TTGACAAACTCCTGCCTGATAGAAATCCAAAATCAAAGCCTGTAGAGTCCATGCCCTGAGAAGGCAGAATATGTGAAGATTTTATTCAAGGTTCCACCCTAATGCTGCAAAGCCTGGCAAAGAGGCACTGTGAAAAATCAACAGATCACATGCACTGGTCTTAAAAGTGGTACCAATGCCCTGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGT-TAGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACTCTGACAACTAGGTTAAAT
s panTro4.chr15              80130808 283 +  99548318 TTGACAAACTCCTGCCTGATAGAAATCCAAAATCAAAGCCTGTAGAGTCCATGCCCTGAGAAGGCAGAATATGTGAAGATTTTATTCAAGGTTCCACCCTAATGCTGCAAAGCCTGGCAAAGAGGCACTGTGAAAAATCAACAGATCACATGCACTGGTCTTAAAAGTGGTACCGATGCCCTGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGT-TAGGGTAATGAACAATGAGGTAACAATTCAAATCACAAAGAACCCTGACAACTAGGTTAAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10139241 283 +  10928107 TTGACAAACTCCTGTCTGAAAGAAATCCAAAATCAAAGCCTGTAGAGTCCATGCCCTGAGAAGGCAGAATATGTGAAGATTTTATTCAAGGTTCCACCCTAATGCTGCAAAGCCTGGCAAAGAGGCACTGTGAAAAATCAACAGATCACATGCATTGGTCTTAAAAGTGGTACCAATGCCCTGGAGGGCCTCATCTTTTTCCACATTTCACAAAAACAAGT-TAGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCTGACAACTAGGTTAAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17211686 283 - 121039945 TTGACAAACTCCTGCCTGAAAGAAATCCAAAATCAAAGCCTGCAGAGTCCATGCCCTGAGAAGGCACAATATGTGAAGACTTTATTCAAGGTTCCACCCTAATGCTGCAAAGCCTGGCAAAGAGGCACTGTGAAAAATCAACAGATCACATGCATTGGTCTTAAAAGTGGTACCAATGCCCTGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGT-TAGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCTGACAACTAGGTTAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106693368 283 - 170124641 TTGACAAACTCCTGCCTGAAAGAAATTCAAAATCAAAGTCTGTAGAGTCCATGCCCTGAGAAGGCAGAATATGAGAAGATTTTATTCAAGGTTCCACCCTAATGCTGCAAAGACTGGCAAAGACGCACTATGAAAAATCAACAGATCATATGCATCCATCTTAAAAGTGGTACCAATGCCCCGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGT-TAGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCTGACAACTAAGTTAAAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108426961 283 - 171882078 TTGACAAACTCCTGCCTGAAAGAAATTCAAAATCAAAGTCTGTAGAGTCCATGCCCTGAGAAGGCAGAATATGAGAAGATTTTATTCAAGGTTCCACCCTAATGCTGCAAAGACTGGCAAAGACGCACTGTGAAAAATCAACAGATCATATGCATCCATCTTAAAAGTGGTACCAATGCCCCGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGT-TAGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCTGACAACCAAGTTAAAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             111394 283 +    130206 ttgaCAAACTCCTGcctgaaagaaattcaaaatcaaaGTCTGTAGAGTCCATGCCCTGAGAAGGCAGAATATGAGAAGATTTTATTCAAGGTTCCACCCTAATGCTGCAAAGACTGGCAAAGAGGCACTGTGAAAAATCAACAGATCATATGCATCCATCTTAAAAGTGGTACCAATGCCCCGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGT-TAGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCTGACAACTAAgttaaat
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21116131 283 -  24206276 TTGACAAACTCCTGCCTGAAAGAAATCCAAAATCAAAGTCTGTAGAGTCCATGCCCTGAGAAGGCAGAATATGCGAAGATTTTATTCAAGGTTCCACCCTAATGCTACAAAGACTGGCAAAGAGGCACTGTGAAAAATCAACAGATCATATGCATCCATCTTAAAAGTCGTACCAATGCCCCGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGT-TAGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCTGACAACTAAGTTAAAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22252438 281 + 158406734 TTGACAAATTCCTACCTGAAAGAAATCCAAAAGCAAAGCCTGTAGAGTCCATGCCCTCAGAAGGCAGAATATATGAAGATTTTATTCAAGGTTTCTCCCTAATGCTGAAAAGCCTGGCAAAGAGGTACTGTGAAAAATCAACAGATTATATGCAT-GGTCTTAAAAGTATTACCAATTACCTGGGGGGCCTCATCCTTTTCCGTATTTCACAAAAACAATT-TAGGGTGATGAACAACGAGGTAACAATTCAAATCACAAAAAACCTTGAC-ACCAGGTTAAAG
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54421786 256 +  91889043 TTGACAAGCCCCTGCCTCACCAAAGCACAAAATCAAAGCCC-TGGAGCTCATGCCCTGAGAAGGCTGGAAGTGTGAAGA-TTTATTCAAGGCTCTTTCCTGGTGCTGCAAAACCTGGCATAAAAGCACCGTGAAAACT-AACGGATCATACATATTGGCCTTAAAAGTGGTACCAATACCCTAGAGGGCCTCATTTTTCTTCACATTTTACAGAATTAAGTGTCGGGTGCCAAATAACAAGATAACAA-CCAAATCATAC------------------------
i canFam3.chr3              I 530 I 48
e mm10.chr7                  81364293 262 + 145441459 I

a score=517183.000000
s hg38.chr15_KI270850v1_alt    349482 194 +    430880 AGT-----TTTTATCTTATTGTCAtttg-ttttttttttttttttt---gagacagggcctagttctgttgcccaggctggagtgcagtggctcacttcaacctcaat-cttcctgggctcaagcgatcttcccacctcagcctctagaacagctgggactacaggcatgtgatatctaccacatctggctgatttaaaaaaaa-
s panTro4.chr15              80131091 197 +  99548318 AGT-----TTTTATCTTATTGTCAtttg-ttttttttttttttttttttgagacagggcctagttctgttgcccaggctggagtgcagtggctcacttcaacctcaat-cttcccgggctcaagcgatcttcccacctcagcctctagaacagctgggactacaggcatgtggtatctaccacatctgcctgatttaaaaaaaa-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10139524 193 +  10928107 AGT-----TTTTATTTTATC-TTATTGT-CAttttttttttttttt---gagacagggtctagttctgttgcccaggctggaatgcagtggctcacttcaacctcaat-gttcctgggctcaagcaatcttcccacctcagcctctagaacacctgggactacaggcatgtgatatctaccacatctggctaacttaaaaaaaa-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17211969 186 - 121039945 AGT-----TTTTATCTTATTGTCAtttg-ttttttttt-----------gagacagggcctagttctgttgcccaggctggagtgcagtggctcacttcaacctcaat-cttcctgggctcaagcaatcttcccacctcagcctctagaacagctgggactacaggcatgtgatatctaccacatctggctgatttaaaaaaaa-
i nomLeu3.chr6              C 0 I 7648
s rheMac3.chr7              106693651 189 - 170124641 AGTTTTCAttttatcttattgttatttg-ttttttt-------------gagacagggcctagttctgttccccaggctggagtgcagtggcttacttcaacctcaag-cttcctgggctcaagcaatctttccatttcagcctctagaatagctgggactacaggcatgtaatatctaccacatccggttgattttaaaaaaa-
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108427244 189 - 171882078 AGTTTTCAttttatcttattgtcatttg-ttttttt-------------gagacagggcctagttctgttccccaggctggagtgcagtggcttacttcaacctcaag-cttcctgggctcaagcaatctttccatctcagcctctagaatagctgggactacaggcatgtaatatctaccacatccggttgattttaaaaaaa-
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             111677 190 +    130206 agttttcattttatcttattgtcatttgtttttttt-------------gagacagggcctagttctgttccccaggctggagtgcagtggcttacttCAACCTcaag-cttcctgggctcaagcaatctttccatctcagcctctagaatagctgggactacaggcatgtattaTCTACCACATTcggttgattttaaaaaaa-
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21116414 189 -  24206276 AGTtttcattttatcttattgtcatttg-atttttt-------------gagacagggcctaggtctgttccccaggctgaagtgcagtggctcacttcaacctcaag-cttcctgggctcaagcaatctttccatctcagcctctagaatagctgggactacaggcacgtaatatctaccacatccggttgatttaaaaaaaa-
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22252719 191 + 158406734 AGTTTTTATTTTATCTTATTGTCAtttg-ttttttt-------------gagacagggcctagctctgtcacccaggctggagtgcagtggctcacttcaacctcaagtcttcctgggctcaagtggtcttcccacctcagcctccagaatagctgggactacagccacatggtacctaccacgtccggctgatttaaaacaatt
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81364293 262 + 145441459 I
e canFam3.chr3               54422042  48 +  91889043 I

a score=356786.000000
s hg38.chr15_KI270850v1_alt    349676 120 +    430880 tttttagtagaggta-gcat----ctatgttgcccaggctggtctcgaactcctgagctcaagcaatcctcttacctcagcctcacaaactcctaggattacaggcatgagccactgcacccagc
s panTro4.chr15              80131288 120 +  99548318 tttttagtagaggta-gcat----ctatgttgcccaggctggtctcgaactcctgagctcaagcaatcctcttacctcagcctcataaagtcctaggattacaggcatgagccactgcacccagc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10139717 124 +  10928107 tttttagtagaggta-gcgtctcactatgttgcccaggctcgtctcgaactcctaagctcaagcaatcctcttacctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17219803 124 - 121039945 tttttagtagaggta-gcatctcactatgttgcccaggctggtctcgaactcctgagctcaagcaatcctcttacctcagcctcacaaagtcctgggattacaggcatgagccactgcacccagc
i nomLeu3.chr6              I 7648 C 0
s rheMac3.chr7              106693840 124 - 170124641 tttttagtagaggta-gggtctcactatgttgcctaggctggtctcaaacacctgagctcaagcaatcctcttctctcagccgcacaaagtcctaggattacaggcatgagccactgcacccagc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108427433 124 - 171882078 tttttagtagaggta-gggtctcactatgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             111867 124 +    130206 tttttagtagaggta-gggtctcactatgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21116603 125 -  24206276 tttttagtagaggtaggggtctcactatgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22252910 122 + 158406734 tttttagtagagaca-ggatctcactatgttgcccaggctgttctttaac-cctgagctcaagcaatcctcgtgcctcagtcccacaaagtcttgggattacaagtgtgaaccaccgcacccag-
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81364293 262 + 145441459 I
e canFam3.chr3               54422042  48 +  91889043 I

a score=96912.000000
s hg38.chr15_KI270850v1_alt    349796 26 +    430880 TTGATTTTATCTTAAGGGTAACTGAG
s panTro4.chr15              80131408 26 +  99548318 TTGATTTTATCTTAAGGGTAACTGAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10139841 26 +  10928107 tTGATTTTATCTTAAGGGTAACTGAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17219927 26 - 121039945 ttgattttatcttaAGGGTAACTGAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106693964 26 - 170124641 TTGATTTTATCTTAAGGGTAACTGAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108427557 26 - 171882078 TTGATTTTATCTTAAGGGTAACTGAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             111991 26 +    130206 ttgatTTTATCTTAAGGGTAACTGAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21116728 26 -  24206276 ttgattttatcttaAGGGTAACTGAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22253032 26 + 158406734 TTGATTTTATCTTAAGGGCAACTGAG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81364555 26 + 145441459 TTGGTTCTGTATGGAGGATAACTAAA
i mm10.chr7                 I 262 C 0
e canFam3.chr3               54422042 48 +  91889043 I

a score=387239.000000
s hg38.chr15_KI270850v1_alt    349822 123 +    430880 AGACACGGAAAAGGAGATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGCACCAGTAGGAACCAGTGTCCA---GCAAAGA--GGAAAACT--AAGTTGGACTTA
s panTro4.chr15              80131434 123 +  99548318 AGACATGGAAAAGGGGATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAGGAACCAGTGTCCA---GCAAAGA--GGAAAACT--AAGTTGGACTTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10139867 123 +  10928107 AGACACGGCAAAGGGAATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAGGAACCAGTGCCCA---GCAAAGA--GGAAAACT--AAGTTGGACTTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17219953 123 - 121039945 AGACACGGAAAAGGGGATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAGGAACCAGTGTCCA---GCAAAAA--GGAAAACT--AAGTTGGACTTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106693990 122 - 170124641 AGACACGGAAAAGGCCATCTGCAGAGCTATTGTGTAGATAGCAGAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAGGAACCAGCGCCTA---GCAAAGA---GAAAACT--AAGTTGGACTTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108427583 122 - 171882078 AGACACGGAAAAGGCCATCTGCAGAGCTATTGTGTAGATAGCAGAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAGGAACCAGCGCATA---GCAAAGA---GAAAACT--AAGTTGGACTTG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             112017 122 +    130206 AGACACGGAAAAGGCCATCTGCAGAGCTATTGTGTAGATAGCAGAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAGGAACCAGCGCcta---gcaaaga---gaaaact--aagttGGACTTG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21116754 122 -  24206276 AGACACGGAAAAGGCCATCTGCAGAGCTACTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAGGAACCAGCGCCTA---GCAAAGA---GAAAACT--AAGTTGGACTTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22253058 122 + 158406734 AGACACAGAAAAGGTGGTCTGCAGAACTATTGTG-GGATAGCAAAGAAGACTGACCAGGGAAACTAAGGAAGAGTACCAGAAGGAACCAGTGCCCA---GCAGAGA--GGAAAACT--AAGTTGGACTTA
i calJac3.chr6              C 0 M 5183
s mm10.chr7                  81364581 121 + 145441459 ACGCCACGAAAAGATGGTCTGAGGAGCTACTGAG--GATGGCAGAGAAG-CTGAGCACAGAACCTGAGGATG---CCCTGCAGTATCTACCATCCA---GTGAGAAACAGAACACTTAAAACTGGACTTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54422090  94 +  91889043 AGACA-------------CTGAGGAGCTGCTGTGGGGGTGGCAGAGGAGGCTGAC-----------AGGAAGGCCACCACCA--CACCGGGGCCCACTGACAGAGA--CCATGTCT--ACACCG------
i canFam3.chr3              I 48 C 0

a score=194641.000000
s hg38.chr15_KI270850v1_alt    349945 85 +    430880 AAGG--ATTTTCTCCAGCAGAGCTCAGATACCTGGATGGACACT-GAAGCCATACAGAGCTATGATTTTGTTCCCCCAAGGGGGTATG
s panTro4.chr15              80131557 86 +  99548318 AAGG--ATTTTCTCCAGCAGAGCTCAGATACCTGGATGGACATTTGGAGCCATACAGAGCTATGATTTTGTTCCCCCAGGGGGGTATG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10139990 85 +  10928107 AAGG--ATTTTCTCCAGCAGAGCTCAGATACCTGGATGGACACT-GGAGCCATACAGAGCTATGTTTTTGTTCCCCCAAGGGGGTATG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17220076 85 - 121039945 AAGG--ATTTTGTCCAGCAGAGCTCAGACACCTGGATGGACACT-GGAGCCATACAGAGCTACGATTTTGTTCCCCCAAGGGGGTATG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106694112 75 - 170124641 AAGG--ATTTTCTCCAGCAGAGCTCAGAT----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCCAACGGGGTATG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108427705 75 - 171882078 AAGG--ATTTTCTCCAGCAGAGCTCAAAT----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCCAACGGGGTATG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             112139 75 +    130206 AAGG--ATTTTCTCCAGCAGAGCTCAGAT----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCCAACGGGGTATG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21116876 75 -  24206276 AAGG--ATTTTCTCCAGCAGAGCTCAGAT----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCCAACGGGTTATG
i chlSab2.chr29             C 0 C 0
s mm10.chr7                  81364702 83 + 145441459 -AGC--ATATTCTCCATCAGAACTAAGGCACCTCGAAGGATACT-AGACCCACAGCGGGCTAGGATCATTTTCCCTTC-TGGGACATG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54422184 63 +  91889043 ATGGCCACTCTCTCCAGTAGTGTTAGGAA-CCTAGAGACACACT-GGACCCACATAGGGCTATGC-----------------------
i canFam3.chr3              C 0 C 0
e calJac3.chr6               22253180 5183 + 158406734 M

a score=1150990.000000
s hg38.chr15_KI270850v1_alt    350030 339 +    430880 AAGGAATAAATGTGACAACAGAATTGATGATAACAGCAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGATTAGGAGCAAATAAATGGAAAACCAGTGATTTCAATAGGCTGATAGCTATAAGAGGAATGAGGGTGGCAGACAATATAAACACGAAGAGGTGGGACACTGAAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGAGTATGG---TAGAGGTGGCTGACTTAGAATGTGAGAAGTCTGAAATATTAGATAAG-TCATTCATGTGGACACTAAAAAGACCGATGG-TGATAACTGGGCCTGGAGTT----AAA
s panTro4.chr15              80131643 339 +  99548318 AAGGAATAAATGTGACAACAGAATTGATGATAACAGCAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAAATTAGGAGCAAATAAATGGAAAACCAGTGATTTCAATAGGCTGATAGCTATAAGAGGAATGAGGGTGGCAGACAATATAAACACGAAGAGGTGGGACATTGAAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGAGTATGG---TAGAGGTGGCTGACTCAGAATGTGAGAAGTCTGAAATATTAGATAAG-TCATTCATGTGGACACTAAAAAGACCGATGG-TGATAACTGGGCCTGGAGTT----AAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10140075 339 +  10928107 AAGGAATAAATGCGACAACAGAAT---TGATAACAGCAACAAAGGAAACGAAGAATGGGTCATGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGATTAGGAGCAAATAAATGGAAAACCAGTGATTTCAATAGGCTGATAGCTATAAGAGGAATGAGGGTGGCAGACAAGATAAACACGAAGAGGTGGGACATTGAAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGAGTATGGAACTAGAGGTGGCTGACTTAGAATGTGAGAAGTTTGAAATATTAGATAAG-TCATTCATGTGGACACTAAAGAGACCGATGG-TGATAACTGGGCATGGAGTT----AAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17220161 342 - 121039945 AAGGAATAAATGCGACAACAGAATTGATGATAACAGCAACAAAGGAAATGAAGAATGGGCCGTACATTATAGGCTAAAGACAGAA-CAAAGTCAATAGATTAGGAGCAAATAAATGGAAGACCAGTGATTTCAATAGGCCGATAGCTATAAGAGGAATGAGGGTGGCAGACAAGATAAACACGAAGAGGTGGGACATTGAAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGAGTATGGAACTAGAGGTGGCTGACTTAGAATGTGAGAAGTTTGAAATATTAGATAAG-TCATTTATGTGGACACTAAAGAGATCGATGG-TGGTAACTGGGCCTGGAATT----AAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106694187 336 - 170124641 AAGGAATAAATGGGACAACAGAGTTGATGATAACAGCAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGTTTGGGAGCAAATAAGTGGAAAATCAGTGTTTTCAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATGAGATAAACACGAAGAGGTGGGACAGTGAAGATTAAGAGCTCTGAGTATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATTAGGTACG-TCATTCATGTGGACACTAAAGAGACCTATGG-TGATAACTGGGCTTGGAGTT----AAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108427780 336 - 171882078 AAGGAATAAATGGGACAACAGAGTTGATGATAACAGCAACAAAGGAAATGAAGAATGGGTCATGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGTTTGGGAGCAAATAAGTGGAAAATCAGTGTTTTCAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATGAGATAAACACGAAGAGGTGGGACAGTGAAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATTAGGTACG-TCATTCATGTGGACACTAAAGAGACCTATGG-TGATAACTGGGCTTGGAGTT----AAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             112214 336 +    130206 AAGGAATAAATGGGACAACAGAGTTGATGATAACAGcaacaaaggaaatgaagaatGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGTTTGGGAGTAAATAAGTGGAAAATCAGTGTTTTCAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATGAGATAAACACGAAGAGGTGGGACAGTGAAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATTAGGTACG-TCATTCATGTGGACACTAAAGAGACCTATGG-TGATAACTGGGCTTGCAGTT----AAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21116951 336 -  24206276 AAGGAATAAATGGGACAACAGAGTTGATGATAACAGCAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGACTGGGAACAAATAAATGGAAAATCAGTGTTTTCAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATGAGATAAACACGAAGAGGTGGGACAGTGAAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATTAGGTACG-TCATTCATGTGGACACTAAAGAGACCTATGG-TGATAACTGGGCCTGGAGTT----AAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22258363 342 + 158406734 AAGAAAGAAATGGGACAACAGAGT---TGATAACAGCAACTAAGGAAATGAAGAATGGATTGTGCATTATAGGTTAAAGGCAGAA-CAAAGTCAATAGACTGGGAACAAATAAATGGAAAACCAGAGATTTCAATAGGCTGATAGCTATAAGAAGAATGAAGATGGCACACAAGATAAATA-GAAGAGTTGAGACAGTGAAGATTAAGTGTTCTGAGGATGGCAAGGTCCAGAGTATGGAACTAGAGGTGGCTGACTTAGAATGTGTTAAGTTTGAAATATTAGTTAAG-TCATTCATGTCGACACTAAAGAGACGTATGG-TGATAAATGGGCCTGGAGTTAAACAAA
i calJac3.chr6              M 5183 C 0
s mm10.chr7                  81364785 296 + 145441459 ---GAATA-----------ATATTCGATGTTGACAACAAGTAAGGAGTTAAGGAACAGGTCAAGTGCTACAAGTTAAAGACAGAAGCAGACAGAAGAGATCAGGAGCAGATGGACAGAGAGTCAGCTAGTTCCATAAGCTGGCAGCTCTAAG--GAATGGAGAAGGC--------------------------------AAGAACATGAATCCTAAGGACAAGGAGGTCCAGGATATGGAACTGTAAGTGGCTAACTTAGATTATATTAAGTC-GAAACACTGGATAGGTTTAACCAAACAGACATTTGAGAGATCCATGGTTGATAGCTGAACTCAGGGTT----TAA
i mm10.chr7                 C 0 I 980
s canFam3.chr3               54422247 313 +  91889043 -AGGAGGAAGTGGGACA--AGAACTGATGGAAGCAGCTCTAGGGGA-----------GGTCATGCGATATAGGTGAAACACAGAA-GTGGGTGAACAGAGTAGAAGCAAAT----GTAAAACCAGCCATTTCAACGTGCTGACAGCTTCAAGAGGGATGAAGGGGTAGAATAAGA--------AGGTGGTGGGATGGCGAACACT--GAGCTTTGAGGATGGCAAGATACAGGATGCTG-ACCACAGTGGGCTGACGTGGAATGTGTGGAATCTGAAATACTGGAGAGG-TCATCTAAATGGATATTCAAGGGACCCATGG-TGATACCTGGGCCTGGGGTT----AAA
i canFam3.chr3              C 0 I 5

a score=531116.000000
s hg38.chr15_KI270850v1_alt    350369 197 +    430880 CAATGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGACAAtgagtaggctctacttggcatagcagcatcttaaaggaaaagtcttcagctaaagcagaaaatggggggagcattcaccagtaaaa-aaaaga---aagccagtttgttaaccct------------------------------------------------------------------------ggaaaagg----------------------------------------------ggagtttcaag--------------------------------------------------------------------------------tggcacagcagagagctctgagagttgtcaagggaGAAA
s panTro4.chr15              80131982 197 +  99548318 CAATGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGACAAtgagtaggctctacttggcatagcagcatcttaaaggaaaagtcttcagctaaagcagaagatggggggagcattcaccagtaaaa-agaaga---aagccagtttgttaaccct------------------------------------------------------------------------ggaaaagg----------------------------------------------ggagtttcaag--------------------------------------------------------------------------------tggcacagcagagagctctgagagttgtcaagggaGAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10140414 197 +  10928107 CAATGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGGCAAtgagtaggctctacttggcaaagcagcatcttaaaggaaaagtcttcagctaaagcagaagatggggggagcattcaccagtaaaa-agaaga---aagccagtttgttaaccct------------------------------------------------------------------------agaaaagg----------------------------------------------ggagtttcaag--------------------------------------------------------------------------------tggcacagcagagagctctgagagttgtcaaggaaGAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17220503 195 - 121039945 CGATGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGACAATCACCAGGCTCTACTTGGCATAGCAGCATCTTAAAGG--AAGTCTTCAGCTAAAGCAGAAGACGGGGGGAGCATTCACCAGTAAAA-AGAAGA---AAGCCAGTTTGTTAACCCT------------------------------------------------------------------------GGAAAAGG----------------------------------------------GGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106694523 177 - 170124641 CACTGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGACAATGAGTAGGCTCTACTTGGCATAGCAGTATCTTAAAGGAAAAGTCTTCAGCTAAAG--------------------CACCAGTAACA-AGAAGG---AGGCCAGTTTGTTAACCCT------------------------------------------------------------------------GGAAAAGG----------------------------------------------GGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108428116 177 - 171882078 CACTGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGACAATGAGTAGGCTCTACTTGGCATAGCAGTATCTTAAAGGAAAAGTCTTCAGCTAAAG--------------------CACCAGTAACA-AGAAGG---AGGCCAGTTTGTTAACCCT------------------------------------------------------------------------GGAAAAGG----------------------------------------------GGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             112550 177 +    130206 CACTGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGACAATGAGTAGGCTCTACTTGGCATAGCAGCATCTTAAAGGAAAAGTCTTCAGCTAAAG--------------------CACCAGTAACA-AGAAGG---AGGCCAGTTTGTTAACCCT------------------------------------------------------------------------GGAAAAGG----------------------------------------------GGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21117287 177 -  24206276 CACTGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGACAATGAGTAGGCTCTACTTGGCATAGCAGCATCTTAAAGGAAAAGTCTTCAGCTAAAG--------------------CACCAGTAACA-AGAAGG---AGGCCAGTTTGTCAACCCT------------------------------------------------------------------------GGAAAAGG----------------------------------------------GGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCACAGAGCTCTGAGAGTTGTCAAGGGAGAAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22258705 194 + 158406734 CACTGAGATTTTCAGAGA------------------------------------------------------------------CCTGGGATAATAAGTAGGTTCTACTTGGCATAGCAGCATCCTAAAGGAAAAGTCTTTAGCTAAAGCAGAAGCCGGAGGGAGCATTCACCAGTGACA-AGGAGG---AGGACAGTTTGTTAACCCT------------------------------------------------------------------------GGAAAAGA----------------------------------------------GAAGTTTCAAG--------------------------------------------------------------------------------TGGCCCAGCAAAGAGCTCTGAGAGTT---AAGGGAGAAA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54422565 463 +  91889043 TACTGAGATTTTCAGAGAAGGAAGGAACTGGGAAGTTAGAAGGAAGAACAAAAGGAATGGCTCTGAGACAAGTGGTAGATGAGGCTTGGAAGAATGTGTATCTCCTGCTTGACAATGTAGCACCTTCAAGGAAAAGCCCCCAGCAAATGCACAAGTCAGAGGGAGCACTCCCCAGTGAAAGAGAAGACACAGAGCTGTGTGTCAATCCTTTTTTTTTttttttttttttaattttatttatttatgatagtcacatagagagagagagaggcagagacataggcagagggagaagcaggctctatgcaccgggagcccgacgtgggattcgatccggggtctccaggatcacgccctgggccaaaggcaggcgccaaaccgctgcgccacccagggatcccTGTGTGTCAATCCTAAAAAAAGGTATAGCACAGTAGGTAACTCCAGGAGCTATCAAGGGAAA--
i canFam3.chr3              I 5 C 0
e mm10.chr7                  81365081 980 + 145441459 I

a score=2109686.000000
s hg38.chr15_KI270850v1_alt    350566 595 +    430880 CAGCATAAAGCAGAACGCCAG---AAAAAATACTCAAGAGGGGAT--G--CTGCCCCA-AAGGCTTGTATCTGAAAACACcaaagatggcaa----gtatgggctctggtaactgtcc--tcacccaa---------ggttttttttaaaaggtattttggaaagagt-caaaaaagcaacatggtaagcactacagacccctttcctcattcacatc-at---ttgtattcactattgtgttggtacacctgttttaccagccacaaaccc-atctacctctgctaacttgaaa-------gttct-----------------------ctactgtgcctacaa-aggtatctt--------gaggctt--------------------tgtcaaattcctgta----caaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctggcaataaac----ctaagtagaaaatggcatgaaaacccacgctggtcactaacgaactctacttcgttaagtgctcacagttcatggtcattcatctgttccgc-aatctggaccaggttcagttaagcttCTAacaacttactgaacgtctagc-----acatgtcaaacactgtgttagaagcactttaggtaaacagtcttcaccaaatcctaagaagtggctgttactactgcatcttaacaaa
s panTro4.chr15              80132179 595 +  99548318 CAGCATAAAGCAGAACGCCAG---AAAAAATACTCAAGAGGGGAT--G--CTGCCCCA-AAGGCTTGTATCTGAAAACACCAAAGATGGCAA----GTATGGGCTCTGGTAACtgtcc--tcacccaa---------ggttttttttaaaaggtattttggaaagagt-caaaaaagcaacatggtaagcactacagacccctttcctcattcacatc-at---ttgtattcactattgtgttggtacacctgttttaccagccacaaaccc-atctacctccgctaacttgaaa-------gttct-----------------------ctactgtgcctacaa-aggtatctt--------gaggctt--------------------tgtcaaattcctgta----caaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctggcaataaac----ctaagtagaaaatggcatgaaaacccacgttggtcactaacgaactctacttcgttaagtgctcacagttcatggtcattcatctgttccgc-aatctggaccaggttcagttaagcttCTAacaacttactgaacgtctagc-----acatgtcaaacactgtgttagaagcactttaggtaaacagtcttcaccaaatcctaagaagtggctgttactactgcatcttaacaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10140611 599 +  10928107 CAGCATAAAGCAGAATGCCAG---AAAAAATACCCAAGAGGGGAT--G--CTGCCCCA-AAGGCTTGTGTCTGAAAACACcaaagatggcaa----gtatgggctctggtaactgtcc--tcacccaa---------gg-tttttttaaaaggtattttggaaagagt-caaaaaagcaacgtggtaagcactatagaccccttttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccgctaacttgaaa-------gttct-----------------------ctactgtgcctacaa-aggtatctt--------gagactt--------------------tgtcaaattcctgta----caaagctaggaatt-----------acctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctggcaataaacctgtctaaatagaaaatggcatgaaaacccacgttggtcactaacgaactctacttccttaagtgctcacagttcatggtcattcatctgttccgc-aatctggaccaggttcagttaagcttCTAaccacttactgaacatctagc-----acatgccaaacactgtgttagaagcactttaggtaaacagtcttcaccaaatcctaagaagtggctattactactgcatcttaacaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17220698 598 - 121039945 CAGCATAAAGCAGAAT-CCAG---AAAAAATACTCAAGAGTGGAT--G--CTGCCCCA-AAGGCTTGTGTCTGAAAACACCAAAGATGGCAA----GTATGGGCTCTGGTAACtgtcc--tcacccaa---------gg-tttttttaaaaggtgttttggaaagagt-caaaaaagcaacatggtaaggactacagaccccttttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccactagcttgaaa-------gttct-----------------------ctactgtgcatacaa-aggtatcct--------gaggctt--------------------tgtcaaattcctgta----caaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatccttt-aatctggcaataaacctgtctaagtagaaaatggcatgaaaacccacgttggtcgctaatgaactctacttccttaagtgctcacagttcatggtcattcatctgttctgc-aatctggaccaggttcatttaagcttCTAacaacttactgaacatctagc-----acatgccaaacactgtgttagaagcactttaggtaaacagtcttcaccaaatcctaagaagtggctattactactgcatcttaacaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106694700 607 - 170124641 CAGCATAAAGCAGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--G--CTGCCCCA-AAGGCTTGTGTCTGAAAACACcaaagatggcaa----gtatgggttctggtaactgtcc--tcacccaa---------ggttttttctaaaaggtattttggaaagagt-caaaaaagcaacatggtaagcactacagaccccttttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccgctaacttgaaa-------gttct-----------------------ctactgtgcctacaa-aggtatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacttgcctaagtagaaaatggcatgacaactcaagttggtcactaacgaactctacttccttaagtgttcacagttcatgatcattcatctgtactgc-aatctggaccaggttcagttaagcttCTAacaacttactgaacgtctagcatgtgatgtgccacacactgtgttagaagcactttaggtaaacagtcttcaccaaatcctaagaagtggctattattactgtatcctaacaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108428293 607 - 171882078 CAGCATAAAGCAGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--G--CTGCCCCA-AAGGCTTGTGTCTGAAAACACcaaagatggcaa----gtatgggttctggtaactgtcc--tcacccaa---------ggttttttctaaaaggtattttggaaagagt-caaaaaagcaacatagtaagcactacagaccccttttctcattcacttcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccgctaacttgaaa-------gttct-----------------------ctactgtgcctacaa-agatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacttgcctaagtagaaaatggcatgacaactcaagttggtcactaacgaactctacttccttaagtgttcacagttcatgatcattcatctgttctgc-aatctggaccaggttcagttaagcttCTAacaacttactgaacgtctagcatgtgatgtgccaaacactgtgttagaagcactttaggtaaacagtcttcaccaaatcctaagaagtggctattattactgtatcctaacaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             112727 607 +    130206 CAGCATAAAGCAGaatgccaga--aaaaaatactcaagaaGGGAT--G--CTGCCCCA-AAGGCCTGTGTCTGAAAACACCAAAGATGGCAA----GTATGGGTTCTGGTAACTGTCC--TCACCCAA---------GGTTTTTTCTAAAAGGTATTTTGGAAAGAGT-CaaaaaaaCAACATGGTAAGCACTACAGACCCCTTTTCTCATTCACATCAAT---TTGTATTCACTATTGTGTTGGTACACCTGTTTCACCAGCCACAAACCC-ATCTACCTCCGCTAACTTGAAA-------GTTCT-----------------------CTACTGTGCCTACAA-AGATATCTT--------GAGGCTT--------------------TGTCAAATTCCTGTA---CCAAAGCTAGGAATT-----------ATCTCTGT---------------------------------------------------------------------------------------AGTGATCCTCT-AATCTAGCAATAAACTTGCCTAAGTAGAAAATGGCATGACAACTCAAGTTGGTCACTAACGAACTCTACTTCCTTAAGTGTTCACAGTTCATGATCACTCATCTGTTCTGC-AATCTGGACCAGGTTCAGTTAAGCTTCTAACAACTTACTGAACGTCTAGCATGTGATGTGCCAAACACTGTGTTAGAAGCACTTTAGGTAAACAGTCTTCACCAAATCCTAAGAAGTGGCTATTATTACTGTATCCTAACAAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21117464 607 -  24206276 CAGCATAAAGCCGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--G--CTGCCCCA-AAGGCTTGTGTCTGAAAACACcaaagatggcaa----gtatgggttctggtaactgtcc--tcacccaa---------ggtttcttctaaaaggtattttggaaagagt-caaaaaagtaacatggtaagcactacagaccccgtttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccactaacttgaaa-------gttcc-----------------------atactgtgcctacaa-agatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacctgcctaagtagaaaatggtatgacaacccaagttggtcactaacgaactctacttccttaagtgttcacagttcatgatcattcatctgttctgc-aatctggaccaggttcagttaagcttctaacaacttactgaacgtctagcatgtgatgtgccaaacactgtgttagaagcactttaggtaaacagtcttcaccaaatcctaagaagtggctgctattactgtatcctaacaaa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22258899 608 + 158406734 CAGCATTAAGCAGTCTGACAG---AAAAAATAGTCAAGAGGGGAT--G--CTGCCCCCTAAGGCTTGTGTCTGAAAACACCAAAGATGACAAAGTTATGTGGGCTCTGGTAACtgtcc--tcacccaa---------ggtttttttttaaacatatgttgggaagagtaaaaaaaagcaacatggtaagcactacagacccgtctcctcattcacatcaat---ttgtattcactattgtgttggtacatctgtttcaccagccacaaactc-atctacctccactaacttgaaa-------attct-----------------------ctagtgtgtccataa-agatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatctttt-aatcggacaataaacctgcctaagcagaaaacagcatgacaacccacgttggtcactaatgaactctacttccttaagggctcacagttcatgatggttcatctgttctacaaatctggaccaggttcagttaagctactaccaacttactgaacttctggc-----atgcgccaagcactgtgttagaagcatcttaggtaaacagtcttcaccaaatcctaacaagtggatattattactgcatcttaacaaa
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81366061 734 + 145441459 cATCACATAGCACAAAGACATATGAAAAAAATTGTAAAAGGAAATAAG--TAGTTTAA-AGGGGTCATAGCTAGGGACACTAAGGA---CAA----GAATGGGCTATGGGAACTATGCTTTTACCCAAATTGGTTTTGATTTTGTTTTGTAAGTGCTTTTTAAATAGC-CCCAAAC-CAACACAGTAGTCAATACAGGTGATTTTCCTCCTTCCCTCCAGTTTATTATATTCAC--TTGTATTGATACA--TGTTTTGCCAGCTACAAATTCTATTTATCTCAGCTAACTTGCAA-------ACTGTTAGTATCTTGGAATTCTTGCAAATTATCTTGTCAACAACAGGAATTTTATCTACAGAAAGCTTCTACTATGAGCATggcctgatggcatattcccttaatcccaagacttggaggtgaggcaggtggatctctgtgagttccaggacagtctagtctacacagcaagctctaagttagttaaagctacatagtaagatccatcttcctcaaacaccaacaaaaGGAATCCTCT-ACTATGGTAACAAGCCTATCCAAATAGAAAATGGCATAACAACCCA-------CACTAGTTGATTCCACTTTCTCAAGAG----------ATGGTCAGTCATCTATTTTAT-GACTTGGACCAGGTTCAGTTAAGTTCCT----ACTAACAGCAACTTTTCC-----ACTCACTGAACATCA----AAACACATCTCAGATATGAATCTTTCCCTAAATCCTAATAAG-------TATTAGCCTATCTTAACAAA
i mm10.chr7                 I 980 I 49
s canFam3.chr3               54423028 564 +  91889043 CAGCATAAAGCAGCA---------GAGCAAAGCTCAAGAGAAGAT--GGCTGGCCCAA-AGGGCTTGTGTCTGAGGACACGGAGGACAATAA----ACATGTGCTACGGTAACTGTCT--TCACCCTA---------AG-----------------TTTAAAAAAAAA-AAAAAAAGCAAAATGGGTgccactgaaaaccacttttctcattcacatcagt---ttctgttcactactgtgttggtacttctgtt---ctagccacagatc--atctacttc----aacatgcaatctttttttttt-----------------------ctaccatgcccacaa-aaacatctt--------gatgctc--------------------tgtcaaattcctgtg---tcaaagctatgaatt-----------atgactat---------------------------------------------------------------------------------------agcattcttctcaatgtgataataagcctgtctaaaacgaaaatgtcatgactatccatgttggccactaatgaactctacttccttaagtgcccgtggttcacagtcaatcatctcttctac-gatctgGACCAGGTTc----------------atttactgtacatatagc-----acatgtcagatgctttgttagaagcactttaggtaagtaatcttcactacattctaagacatgagtactattaccccatctcaataaa
i canFam3.chr3              C 0 C 0

a score=264233.000000
s hg38.chr15_KI270850v1_alt    351161 80 +    430880 aggaaaccaagactt--ggggcagtc-agtttgtaaaag-taacagctaatgagtgaca----gagactggatgctttcccactccaa
s panTro4.chr15              80132774 80 +  99548318 aggaaaccaagactt--ggggcagtc-agtttgtaaaag-taacagctaatgagtgaca----gagactggattcTTTCCCACTCCAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10141210 80 +  10928107 aggaaaccaagactc--ggggcagtc-agtttgtaaaag-taacagctaatgagtgaca----gagactggattcTTTCCCACTCCAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17221296 80 - 121039945 aggaaaccaagactt--ggggcagtc-agtttgtaaaag-tagcagctaatgagtgaca----gagactggattctttcccactccaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106695307 80 - 170124641 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-taacagctaatgagtgaca----gagactggattcTTTCCCACTCCAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108428900 80 - 171882078 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-taacagctaatgagtgaca----gagactggattctttcccactccaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             113334 80 +    130206 AGGAAACCAAGACTT--GGGGCAGTT-AGTCTGTAAAAG-TGACAGCTAATGAGTGACA----GAGACTGGATTCTTTCCCACTCCAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118071 80 -  24206276 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-taacagctaatgagtgaca----gagactggattcTTTCCCACTCCAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22259507 86 + 158406734 gggaaaccaagactt--ggggcagtcaagtttgtaaaagttaacagctaataagtgacagagtgagactggattctttcccattccaa
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54423592 74 +  91889043 ---------aggctcaaagggcaagt--gtttgtgtaag-taacagctagtcagtgacagggtgggacccaattc--tctgattctga
i canFam3.chr3              C 0 I 18
e mm10.chr7                  81366795 49 + 145441459 I

a score=257607.000000
s hg38.chr15_KI270850v1_alt    351241 83 +    430880 gtACCATTCACTAGCTACTTTTTT----TTTTTTTTTT------AATCTTTA---GGACTTCACATCTGTTTGTCTTCACAT---TCCTCAGCACTTTT
s panTro4.chr15              80132854 84 +  99548318 GTACCATTCACTAGCTACTTTTTT----TTTTTTTTTT-----TAATCTTTA---GGACTTCACATCTGTTTGTCTTCACAT---TCCTCAGCACTTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10141290 87 +  10928107 GTACCATTCACTAGCTACtttttt----tttttttttt--ttttAATCTTTA---GGACTTCACATCTGTTTGTCTTCACAT---ACCTCAGCACTTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17221376 89 - 121039945 gtACCATTCACTAGCttttttttt----ttttttttttttttttAATCTTTA---GGACTTCACATCTGTTTGTCTTCACAT---TCCTCAGCACTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106695387 81 - 170124641 GTACCATTCACTAGCTACTTTTTT-------TTTTTTT-----TAATCTTTA---GAACTCCACATCTGTTTGTCTTCACGT---TCCTCAGCACCTTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108428980 81 - 171882078 gtACCATTCACTAGCTACTTTTTT-------TTTTTTT-----AAATCTTTA---GAACTCCACATCTGTTTGTCTTCACGT---TCCTCAGCACCTTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             113414 88 +    130206 GTACCATTCACTagctacttttttgttgttgttgttgt-----taatctttA---GAACTCCACATCTGTTTGTCTTCACGT---TCCTCAGCACCTTT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118151 84 -  24206276 GTACCATTCACTAGCTACtttttt----tttttttttt-----tAATCTTTA---GAACTCCACATCTGTTTGTCTTCACGT---TCCTCAGCACCTTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22259593 79 + 158406734 gtACCATTCATTCACTAGCTAGTT------------TT-----TAATCTTTA---GGACTTCACATCTGTTTGTCTTCACATACATTCCTGGCACCTTT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81366844 72 + 145441459 GCATCATTCACTAGCTAC------------------AG-----CAATCATTACTGAGACCTTGTGTCTACTTATTTTCATGT----CCTTAGCACATCT
i mm10.chr7                 I 49 C 0
s canFam3.chr3               54423684 82 +  91889043 GTACCATTTACTAGCTATTTTTTT-----TTTTCCTTT-----TAATACTTA---GGACTTTACATCTTTTTATCTTCCTGT----TATCGACACTTTT
i canFam3.chr3              I 18 I 191

a score=1015732.000000
s hg38.chr15_KI270850v1_alt    351324 271 +    430880 CC--TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTTGGGTCTTAAATC-TATCTAGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatcagaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagttttagaagcactgATCCATACAAA---CCCGAGGCTTGCTACTTCAAATTCCTAATCA--A
s panTro4.chr15              80132938 271 +  99548318 CC--TTTGTCTGAA--TCCTTTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTTGGGTCTTCAATC-TATCTAGGGCCTTGCCACTACAggaactcattaaaaatgcactttgggtcccaccccagac---ctgaatcagaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagttttagaagcactgATCCATACAAA---CCCGAGGCTTGCTACTTCAAATTCCTAATCA--A
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10141377 272 +  10928107 TC--TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTCGGGTCTTAAATCTTATCTAGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatcagaatctgtgtttttaa-aagatccccagga-gatgtgtatac-------acatt-aagttttagaagcactgATCCATACAAA---CCCGAGGCTTGCTACTTCAAATTCTTAATCA--A
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17221465 272 - 121039945 CC--TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTCGGGTCTTAAATCTTATCTAGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatcagaatctgcatttttaa-aagatccccagga-gatatgtatac-------acatt-aagttttagaagcactgATCTATACAAA---CCCGAGGCTTGCTACTTCAAATTCCTAATCA--A
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106695468 272 - 170124641 CC--TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TGTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAATATTAGGGTCTTAAATCTTATCTAGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatcagaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAAGCTTGCTACTTCAAATTCCTAATCA--A
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108429061 272 - 171882078 CC--TTTGCCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TGTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAATATTAGGGTCTTAAATCTTATCTAGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatcagaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAAGCTTGCTACTTCAAATTCCTAATCA--A
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             113502 272 +    130206 CC--TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TGTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAATATTAGGGTCTTAAATCTTATCTAGGGCCTTGCCACTACAGGAActcattaaaaatgcattttgggtcccaccccagac---ctgaatcagaatctgcatttttaa-aagattcccaGGA-GATGTGTATAC-------ACatt-aagtttgagaagcactgacccATACAAA---CCCAAGGCTTGCTACTTCAAATTCCTAATCA--A
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118235 272 -  24206276 CC--TTTGTCTGAA--TCCTTTTAGACCATCAACTAC-----------------------------AGACTAGTGA--------TCTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTAGGGTCTTAAATCTTATCTAGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatcagaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAGGTTTGCTACTTCAAATTCCTAATCA--A
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22259672 270 + 158406734 CC--TTTGTCTGAA--TCCTTTAAGACCATGAACT-------------------------------AGACTAGTGA--------TGTCACCTACCAGAAGTTCCTGCTTTAGGACTTAGAATATTCGGGTCTTAAATCTTATCTAGGgcctcaacactataggaactcattaaaaatgcattttgggtcccacccgaga----ctgactcagaatctccattttaaa-aagatccctagga-gatttgtgtac-------acattcaagtttaagaagtactTATCCATGCAAA---CCTGAGGCCTGCTACTTCAAATTCCTAATCA--A
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81366916 271 + 145441459 CCTTTTTGTTCAAA--TCTTTTAAGATCATCAACCAC-----------------------------AGATGATAAA--------TCTCACCTACCAGAAGTTCAGG-----GGACCTAAAA-AGAAAGGTCTCAAAAGTTA-----GGGATGGCCATGGtaagaactcatt-aaaatgtacctaaaacaccacttgaggt---ctgaaccagaatctgcattttaac-aagatccctgtgaggatagatacactaaagATACACTAAAGCTTTGAAAAC-----TCCAGCCAAAATCCCTATGTTTTATTACTTTAAGTTCCTAATTACTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54423957 316 +  91889043 CT--TTTGTTCAAAATTCCTTTAAGACCATCAACTACTaaaaaaaaaaaaaaaaaaaaaaGACCATCAACTACTGACAAAGCTCTCCCTCCTTCCAAAAGTCAGTGCCTTGAGATCTAAATCATTCAGGCCATGAAACTTCTCTAGGGCCTTGCCACTGtaggagctcattaaaaatgcatcttgggccccactccagacccactgaatcagaacctgcattttgaacaagatccccagga-ggtttgtgtgc-------acattaaagtttgagaagcactCATCTAGAAAAA---CCTAAGGCTTGCTACGTCAAGCTTCTAATCA--G
i canFam3.chr3              I 191 I 45

a score=246743.000000
s hg38.chr15_KI270850v1_alt    351595 67 +    430880 TTGCCTTATCATACCCAAACATCTTTCATATATAATTATTTCCTCTGACTTAAAGACTGGAGGTTAT
s panTro4.chr15              80133209 67 +  99548318 TTGCCTTATCATACCCAAACATCTTTCATATATAATTATTTCCTCTGACTTAAAGACTGGAGGTTAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10141649 67 +  10928107 TTGCCTTATCATATCCAAACATCTTTCATATATAATTATTTCCTCTGACTTAAAGACTGGAGGTTAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17221737 67 - 121039945 TTGCCTTATCACATCCAAACATCTTTCATATATAATTATTTCCTCTGACTTAAAGACTGGAGGTTAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106695740 67 - 170124641 TTGCCTTATCACACCCAAACATCTTTCATACATAATTATTTCCTCTGACTTAAAGACTGGAGGTTAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108429333 67 - 171882078 TTGCCTTATCACACCCAAACATCTTTCATACATAATTATTTCCTCTGACTTAAAGACTGGAGGTTAT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             113774 67 +    130206 TTGCCTTATCACACCCAAACATctttcatatataattatttcctcTGACTTAAAGACTGGAGGTTAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118507 67 -  24206276 TTGCCTTATCACACCCAAACATCTTTCATATATAATTATTTCCTCTGACTTAAAGACTAGAGGTTAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22259942 67 + 158406734 TTGCCTTATCACACCCAAACATCTTTCATACATAATTATTTCCTCTGACTTAAAGACTAGAGGTTAT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81367187 67 + 145441459 TACCCTTACTACACCCAAACATGCTTCATATGAAATTATTTATGTTAATTTAAAGGTTGGAGCGTAT
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54424273 45 +  91889043 I

a score=340966.000000
s hg38.chr15_KI270850v1_alt    351662 121 +    430880 ggccaagtgcagtggttcacgcctgtaataccagtaccttgggggactgaggcaggaggactgcttgagaccaggagttcaagaccaccctggacaacatagtaaggcctgtctct---------aaaaa
s panTro4.chr15              80133276 121 +  99548318 ggccaagtgcagtggttcacgcctgtaataccagcaccttgggggactgaggcaggaggactgcttgagaccaggagttcaagaccaccctggacaacatagcaaggcctgtctct---------aaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10141716 123 +  10928107 ggccaagtgcagtggttcacacctgtaataccagcacctcgggggactgaggcaggaggactgcttgaggccaggagttcaagaccaccctggacaacatagcaaggcctgtctct-------aaaaaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17221804 121 - 121039945 ggccaagtgcagtggttcacgcctgtaataccagcaccttgggggactgaggcaggaggactgcttgaggccaggagttcaagaccaccctggacaacatagcaaggcctgtctct---------aaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106695807 119 - 170124641 ggccgagtgctgtggttcatgcctataataccagcaccttgggggattgaggcaggaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct-----------aaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108429400 120 - 171882078 ggccgagtgctgtggttcatgcctataataccagcaccttgggggattgaggcaggaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct----------aaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             113841 120 +    130206 GGCCGagtgctgtggttcatgcctataataccagcaccttgggggactgaggcaggaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct----------aaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118574 120 -  24206276 ggccgagttctgtggttcatgcctataatactagcaccttgggggactgaggcaggaggacggcttgaggtcaggaattcaagaccaccctgggcaacacagcaaggcctgtctct----------aaaa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22260009 120 + 158406734 ggcctagtgcagtggttcacacctgtaataccaccaactt-ggggactgaggcaggaggattgcttgaggccaagagttcaagaccagcctgggc---------aggcctatctcttaaaaaaaaaaaaa
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81367254   0 + 145441459 C
e canFam3.chr3               54424273  45 +  91889043 I

a score=116859.000000
s hg38.chr15_KI270850v1_alt    351783 38 +    430880 aaataaatcagccaggcattatggcatgcactgatagt
s panTro4.chr15              80133397 38 +  99548318 aaataaatcagccaggcattatggcatgcactgatagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10141839 38 +  10928107 aaataaatcagccaggcattatggcatgcactgatagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17221925 38 - 121039945 aaataaatcagccaggcattatggcatgcaccaatagt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106695926 38 - 170124641 aaataaatcagacaggcattatggcatgcactgacagt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108429520 38 - 171882078 aaataaatcagacaggcattatggcatgcactgacagt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             113961 38 +    130206 aaataaatcagacagGCATTATGGCATGCACTgacagt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118694 38 -  24206276 aaataaatcagacaggcattatggcatgcactgacagt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22260129 38 + 158406734 aaaaaaatcagccaggcattatggcatgtacctatagt
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81367254 18 + 145441459 AAATAAA--------------------GCTCTTACAGT
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54424273 45 +  91889043 I

a score=349758.000000
s hg38.chr15_KI270850v1_alt    351821 110 +    430880 cccagttactcaggaggctgaggcaggaggatcacttgagcctaagaggttgaggctgcagtgggccatgatcgtgccactgcactccagactgggcaacagggcaaaat
s panTro4.chr15              80133435 110 +  99548318 cccagttactcaggaggctgaggcaggaggatcacttgagcctaagaggttgaggctgcagtgggccatgatcgtgccactgcactccagactgggcaacagggcaaaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10141877 110 +  10928107 cccagttactcaggaggctgaggcaggaggatcacttgagccaaggaggttgaggctgcagtgagccatgatcatgccactgcactccagactgggcaacagggcaaaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17221963 110 - 121039945 cccaattactcaggaggctgaggcaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgtgccactgcactccagactgggcaacagggcaaaat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106695964 110 - 170124641 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggcaaaat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108429558 110 - 171882078 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggcaaaat
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             113999 110 +    130206 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggcaaaat
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118732 110 -  24206276 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacaggacaaaat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22260167 110 + 158406734 cccagttactcaaaaggcttaggcagaaggatcacttgaacccaggaggttgaggttgcagtgagccatgattgtgccactgcactccagcctgggcaacaggacaaaat
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81367272   0 + 145441459 C
e canFam3.chr3               54424273  45 +  91889043 I

a score=33612.000000
s hg38.chr15_KI270850v1_alt    351931 14 +    430880 cctgtctc-aa-------aaaa
s panTro4.chr15              80133545 14 +  99548318 cctgtctc-aa-------aaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10141987 14 +  10928107 cctgcctc-aa-------aaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17222073 14 - 121039945 cctgtctc-aa-------aaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106696074 14 - 170124641 cctgtctc-aa-------aaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108429668 14 - 171882078 cctctctc-aa-------aaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             114109 15 +    130206 cctgtctcaaa-------aaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118842 14 -  24206276 cctgtctc-aa-------aaaa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22260277 21 + 158406734 cctgtctc-aaGGGGGGGGGGG
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54424318 13 +  91889043 CTTGCCTT-AG-------AAA-
i canFam3.chr3              I 45 C 0
e mm10.chr7                  81367272  0 + 145441459 C

a score=1446114.000000
s hg38.chr15_KI270850v1_alt    351945 450 +    430880 aaaaaaaaGACTGGAGGTTATAATTTAAATACAGTTCTCACACTAAAATGGTAA---ATAC-TTAAGA-GAAAAAAAA---GGCATCAGATAAAGAAATCAACAAGGCTATATAGGACATTTACTTAAGAGTTCCTTCTCTCTGAAAACACT-GGGTGGGAGTGGAGGACAACACAGAGAGGCAAGACAGA-CACAGTAACCATGAACAAATAAGAATATAAAAAAAGAATGGTAAGGATT--ATCATAGTTTCAGGAAAAGTGATGGCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCACACG---------GAGCAAAACC-A-------------AAAGGAGCAAGGGCCTACTT--------AGA-----GCAGAAAG-----AGAAAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaactggaatat--gaatgacagtttaatcaaagtagtgtta
s panTro4.chr15              80133559 452 +  99548318 aaaaaaa-GACTGGAGGTTATAATTTAAATACAGTTCTCACACTAAAATGGTAA---ATAC-CTAAGA-GAAAAAAAAAAAGGCATCAGATAAAGAAATCAACAAGACTATATAGGACATTTACTTAAGAGTTCCTTCTCTCTGAAAACACT-GGGTGGGAGTGGAGGACAACACAGAGAGGCAAGACAGA-CACAGTAACCATGAACAAATAAGAATATAAAAAAAGAATGGTAAGGATT--ATCATAGTTTCAGGAAAAGTGATGGCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCACACG---------GAGCAAAACC-A-------------AAAGGAGCAAGGGCCTACTT--------AGA-----GCAGAAAG-----AGAAAAACGTTATTAAGGATTTAAGGACATTACTG-------GGTCACTTGACAAAACTGGAATAT--GAATGACAGTTTAATCAAAGTAGTGTTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10142001 448 +  10928107 aaaaa---GACTGGAGGTTATAATTTAAATACAGTTCTCACACTAAAATGGTAA---ATAC-TTAAGA-GAAAAAAAA--AGGCATCAGATAAAGAAATCAACATGGCTATACAGGACATTTACTTAACAGTTCCTTCTCTCTGAAAACACT-GGGTGGAAGTGGAGGACAACACAGAGAGGCAAGACAGA-CATAGTAACCATGAACAAATAAGAATATAAAAAAAGAGTGGTAAGGATT--ATCATAGTTTCAGGAAAAGTGATGGCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACC-A-------------AAAGGAGCAAGGGCCTACTC--------AGA-----GCAGAAAG-----AGAAAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaactggaatat--gaatgacagtttaatcaaagtagtgtta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17222087 449 - 121039945 aaaaaa--GACTGGAGGTTATAATTTAAATACAGTTCTCACACTAAAATGGTAA---ATACTTTAAGA-GGAAAAAAA--AGGCATCAGATAAAGAAATCAACATGGCTATATAAGACATTTACTTAACAGTTCCTTCTCTCTG-AAACACT-TGGTGGGAGTGGAGGACAACACAGAGAGGCAAGACAGA-CACAGTAACCATGAACAAATAAGAATATAAAAAAAGAGTGGTAAGGATT--ATCATAGTTTCAGGAAAAGTGATGGCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACC-A-------------AAAGGAGAAAGGGCCTACTT--------AGA-----GCAGAAAG-----AGAAAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaactggaatat--gaatgacagtttaatcaaagtagtgtta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106696088 434 - 170124641 aaaa----GACTAGAGGTTATAATTTAAATACAGTTCTCACACTAAAATGGTAAAT-ATAC-TTAAGA-GAAAAAAAA--AGGCATCAGATAAAGAAATCAACATGGCTACACAGGACATTCA--------------CTCTCTGAAAACACT-GAGTGGGAGTGGAGGACAACACAGAGAGGCAAGACAGA-CACAGTAACCATGAACAAGTAAGAGTACAAAAAAAGAGTGGTAAGGATT--ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACC-A-------------AAAGGAGCAAGGGCCTACTT--------AGA-----GCACAAAG-----AGAAAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaattggaatat--gaatgacagtttaatcaaagtagtg-ta
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108429682 434 - 171882078 aaaa----GACTAGAGGTTATAATTTAAACACAGTTCTCACACTAAAATGGTAAAT-ATAC-TTAAGA-GAAAAAAAA--AGGCATCAGATAAAGAAATCAACATGGCTACACAGGACATTCA--------------CTCTCTGAAAACACT-GAGTGGGAGTGGAGGACAACACAGAGAGGCAAGACAGA-CACAGTAACCATGAACAAGTAAGAGTATAAAAAAAGAGTGGTAAGGATT--ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACC-A-------------AAAGGAGCAAGGGCCTACTT--------AGA-----GCACAAAG-----AGAAAAATGTTATTAAGGATTTAAGGACATTACTG-------GGTCACTTGACAAAATTGGAATAT--GAATGACAGTTTAATCAAAGTAGTG-TA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             114124 434 +    130206 aaaa----gactagaggTTATAATTTAAATACAGTTCTCACACTAAAATGGTAAAT-Atac-ttaaga-ggaaaaaaa--aggcatcagATAAAGAAATCAACATGGCTACACAGGACATTCA--------------CTCTCTGAAAACACT-GAGTGGGAGTGGAGGACAACACAGAGAGGCAAGACAGA-CACAGTAACCATGAACAAGTAAGAGTATaaaaaaaGAGTCGTAAGGATT--ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGTTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACC-A-------------AAAGGAGCAAGGGCCTACTT--------Aga-----gcacaaag-----agaaaaatgttattaaggaTTTAAGGACATTACTG-------GGTCACTTGACAAAATTGGAATAT--GAATGACAGTTTAATCAAAGTAGTG-TA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21118856 435 -  24206276 aaaa----GACTAGAGGTTATAATTTAAATACAGTTCTCACACTAAAATGGTAAAT-ATAC-TTAAGAGGAAAAAAAA--AGGCATCAGATAAAGAAATCAACATGGCTACATAGGACATTCA--------------CTCTCTGAAAACACT-GAGTGGGAGTGGAGGACAACACAGAGAGGCAAGACAGA-CACAGTAACCATGAACAAGTAAGAGTATAAAAAAAGAGTGGTAAGGATT--ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACC-A-------------AAAGGAGCAAGGGCCTACTT--------AGA-----GCACAAAG-----AGAAAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaattggaatat--gaatgacagtttaatcaaagtagtg-ta
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22260298 444 + 158406734 GAAA----GACCGGAGTTTATAATTTAAATACAGTTCTCACACTAAAATGGTAA---ATAT-TTAAGA-GAAAAAAAG-----CATCAGATAAAGAAATCAACATGGCTATATAGGCCATTTACTTAACAGTTCCTTCTGTCTGAAAACACTGGGGTGGGAGTGGAGGACAACACAGAGAGGCAAGACAGG-CACAGTAACCATGAACAAATAAGAATATAAAAAAAGAGTGATAAGGATT--ATCATAGTTTCAGGAAAAGTGATGGTCACAACAAGCTGATCATTGTGAAAA----ACATTCAGAACAA-CCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACAGA-------------AAGGGAGCTAGGGGTTACTT--------AGG-----GCAGAAAG-----AGAAAAATGTTATTAAGGATTTAAGGACATTACTG-------GGTCACTTGACAAAACTGAAATAG--GAAGGACAGTTTAACCAAAGTAGTA-TA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81367272 426 + 145441459 -------------------ATAATGAAG-------------ACTA------------ACAT-TCAAGG-ACATAGAAA-------------------GCCAAAATGACTATACAGGGCATTTCACAAAGAGTCTG--ATTTCTAAAAACACT-GTGTGGAAGTAGGGAAGAA-GCAGAGAGGC-AGAGAAA-CACAGC-ACCACGAACAATAAAGAAT----AAAAAGAATGACATGGAAT--ATAATACTTTC-GGGAAAGTGATGGCCGGAACTAGCTGCATCCTGTAAAAAGCTCACATTGAACAGAAGCAAAGGAGCTAAGGCCTATTGCTTCAAGCAGATACGTGTTTTAAAAAGCAAGACA-ATTGCTACAGAATTGATGGGGCTAGAGATGGCTC--------AGT-----CATTAAAGGCTAAGGTAAAACATTCATAA------AAAGACATTACTGTATTACTGGGCACAGGACAAATTTGGaatataaaaataatagtttaat-aaatgaata-ta
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54424331 415 +  91889043 -----------------CTGTAGGTTAAACACAGCTCTTACAGCATAATGGCAACTAGTAA-CTAAAA-TAACAGCAG---------------------TAAGGTGGCTATACAGGACATTCC-CAAGGAGTGTG--ATCTCTGAAAACAAT-GGTGGGGTGCATGGTAGGGAGTAGGGAGGAGAGAGGGAGGGTGACAGCCAGGAACA---AAGACTAT---GAAAGAGTGGTACAGACTTGGTAACAGGTTCAGGAAAAATGTTGACTGAAGCAAGCCCGATGTTGTGAAAA----ATATTCAAGACAA-CCAAGAAACT-----------TTGTAAGCTCATACT---------GAGCCAAAGC-A-------------AAAGGAGCTGGGGCCTACTGCTTTGAGAAGATACCTGCTGACAG-----AGAAAAGTACCATG--------AAGGACATC-CTG-------GGTCATGTGATGAAATTGGAGCAT--GAACAGGACTTTAATTAAAGTACTGTTA
i canFam3.chr3              C 0 I 47

a score=79776.000000
s hg38.chr15_KI270850v1_alt    352395 21 +    430880 tcaactttaaattgactaaag
s panTro4.chr15              80134011 21 +  99548318 TCAACTTTAAATTGACTAAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10142449 21 +  10928107 tcaactttaaattgactaaag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17222536 21 - 121039945 tcaactttaaattgactaaag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106696522 21 - 170124641 tcaactttaaattgactaaag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108430116 21 - 171882078 TCAACTTTAAATTGACTAAAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             114558 21 +    130206 TCAACTTTAAATTGACTAAAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21119291 21 -  24206276 tcaactttaaattGACTAAAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22260742 21 + 158406734 TCAACTTTAAATTGACTGAAG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81367698 21 + 145441459 tctattttaaaCTGCCCAAAG
i mm10.chr7                 C 0 I 190
e canFam3.chr3               54424746 47 +  91889043 I

a score=917269.000000
s hg38.chr15_KI270850v1_alt    352416 330 +    430880 ttaactgttttgttacatatgaatgtatgtaagatcatctctattctttttttttttttttttttttttt-------gagcaagggtctccctctgtaacccaggctagagcgcaggtgcacaattacagctcactgcagtctcaacctcccacttcagcctccaaagtagctagcggcatgccaccatgtctgactaatttttttttttttttttt-----ggtagaggcaggatctcactctgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtactcaggtcacaggtgtgagcctccgtgcctgggc
s panTro4.chr15              80134032 339 +  99548318 TTAACTGTTTTGTTACATATGAATGTTTGTAAGATCATCTCTATTCtttttttttttttttttttttttttttttttgagcaagggtctccctctgtaacccaggctagagcgcaggcgcacaattacagctcactgcagtctcaacctcccacctcagcctccaaagtagctagcggcatgccaccatgtctgactaatttttttttttttttttt---ttggtagaggcaggatctcactctgttgcccaggctggtctcgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtactcagatcacaggtgtgagcctccgtgcctggGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10142470 327 +  10928107 ttaactgttttgttacatatgaatatatgtgagatcatctctattctttttttttttttttttttttt---------gagcaagggtctccctctgtaacccaggctagagctcaggtgcacaattacagctcactgcagtctcaacctcccacctcagcctccaaagtagctagcggcatgccaccacgtctgactaacttttttttttttttttt------gtagaggcaggatctcactatgttgcccgggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcctccgtgcctgggc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17222557 319 - 121039945 ttaactgttttgttacatatgaatgtatgtaagatcatctctattctttttttttttttttttttt-----------gagcaagggtctgcctctgtaacccaggctagagcgcaggtgcactattacagctcactgcagtctcaacctcccacctctggctccgaagtagctagcggcatgccaccatgcctggctaatttttttttttt------------gtagaggcaggatctcactatgttgcccaggctggtcttgaacttctgggctcaagcaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcctctgtgcctgggc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106696543 320 - 170124641 ttaactgttttgttacatatgaatatatgtaagatcatcgctattcttttttttt----------------------gagcaagggtctccctctgtaacccaggctacagcgcaggtgcacaattacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaattttttttttttttttttttttttgtagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagccaccgtgcctgggc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108430137 315 - 171882078 TTAACTGTTTTGTTACATATGAATATATGTAAGATCATCGCTAttcttttttttt----------------------gagcaagggtctccctctgtaacccaggctacagcgcagatgcacaattacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaa-----tttttttttttttttttttgtagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagccaccgtgcctggGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             114579 318 +    130206 TTAACTGTTTTGTTACATACGAATGTATGTAAGATCAtcgctattcttttttttt----------------------gagcaagggtctccctctgtaacccaggctacAGCGCAGGtgcacaattacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctgact--ttttttttttttttttttttttttgtagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagccaccgtgcctgggc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21119312 320 -  24206276 TTAACTGTTTTGTTACGTACGAATGTATGTGAGATCATTGCTAttcttttttttt----------------------gaacaagggtctccctctgtaacccaggctacagcgcaggtgcacaattacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaattttttttttttttttttttttttgtagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagccaccgtgcctggGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22260763 309 + 158406734 TTAACTGTTTTGTTACCTATGAA----TGTAACATCATCTCTAttcttttttctt----------------------gagcaagggtctccctctgtaacccaggctagagtgcaagcaaacaattacagatcactgcagtctcagcctcctacctcagcctcccaagtagccagggacatgctgccatgtctggctaatttttttttcttttttt-------ggagagataggatttcactatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcccacctcagcctcccaaagtactcagatcacaggtgtgagccactgtgcccagcc
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e canFam3.chr3               54424746  47 +  91889043 I

a score=5348.000000
s hg38.chr15_KI270850v1_alt    352746 2 +    430880 ca
s panTro4.chr15              80134371 2 +  99548318 CA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10142797 2 +  10928107 ca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17222876 2 - 121039945 ca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106696863 2 - 170124641 ca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108430452 2 - 171882078 CA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             114897 2 +    130206 ca
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21119632 2 -  24206276 CA
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261072 0 + 158406734 C
e canFam3.chr3               54424746 47 +  91889043 I

a score=388668.000000
s hg38.chr15_KI270850v1_alt    352748 148 +    430880 attatctctcctcttaatgattcagaaaacaattatgtattgatacatggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacacgaacaataggaggttctggataaaaaggattacaaatattctttgtataattt
s panTro4.chr15              80134373 148 +  99548318 ATTATCTCTCctcttaatgattcagaaaacaattatgtattgatacatggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacatgaacaataggaggttctggataaaaaggattacaaatattctttgtataattt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10142799 146 +  10928107 attatctctcctcttcatgactcagaaaacaattatgtcttgatatatggagagagaatgtgcaaatgataaagcaaatggggtgaaatgaacacgaacaataggaggttctgaataaaaaggattacaaata--ctctgtataattt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17222878 148 - 121039945 attatctctcctcttaatgattcagaaaacaattatgtattgatatatggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaacaacaataggaggttctggataaaaaggattacaaatattctttgtataattt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106696865 148 - 170124641 attatctctcctcttaatgattcagaaaacaattatgtattgctatatggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtataattt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108430454 148 - 171882078 ATTATCTCTCctcttaatgattcagaaaacaattatgtattgctatatggaaagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtataattt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             114899 148 +    130206 ATTATCTCTCCTCTTAATGATTCAGAAAACAATTATGTATTGCTATATGGAGAGAGAATGTgcaaatgataaagcaaatgggGTAAAATGAACACCAATAACAGGAGGTTCTGGataaaaaggaatacaaatattctttgtataattt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21119634 148 -  24206276 ATTATCTCTCctcttaatgattcagaaaacaattatgtattgctatatggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtatacttt
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54424793 131 +  91889043 AACATCTCTGCTCTTAATGGTCCAGGACGAATTCACGTAGAGACA----GAAAAAGAACATGCAAGTGATGAA--------GGTGAGAATCACAAGAGGA----GAGAGTCCAGAT-AAAAGAAATAAAAGTATTCCTTGTATAACTT
i canFam3.chr3              I 47 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261072   0 + 158406734 C

a score=1461315.000000
s hg38.chr15_KI270850v1_alt    352896 460 +    430880 tatttgtataacttctataaatttgaaattatttcCA----TTTTTTTTTAatgacaggaagaaaaacaagtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcagagggaaatcaagcacaagtaataggaactaggatcccag-aggataagacagtaat-------------tgagtacttttggagtct----ctattagaagaaataatctt---ttaaacatgctttttaaagtctcaaaaaaatctgcatagatatttgcaggcccacatgtgtaaAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCAATCTTTACCATCCTACTCCAATAGCAATTAGCTCAACATCTGGCAAAAAGCAGGTGAACAATGACTGCTGAATTCTACTGAAAGACAGAGAGTAC-GTATTCCATAGAGCCAGTACG----CTAAGGCCCTACCCTTTTCTATCAAGGATA
s panTro4.chr15              80134521 463 +  99548318 tatttgtataacttctataaattttaaattatttcCA----TTTTTTTTTAatgacaggaagaaaaacaagtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcagagggaaatcaagcacaagtaataggaactaggatcccag-aggataagatagtaat-------------tgagtacttTTGGAGTCT----CTATTAGAAGAAATAATCTTCTTTTAAACATGCTTTTTAAAGTCTCAAAAAAATCTGCATAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCAATCTTTACCACCCTACTCCAATAGCAACTAGCTCAACATCTGGCAAAAAGCAGGTGAACAATGACTGCTGAATTCTACTGAAAGACAGAGAGTAC-GTATTCCATAGAGCCAGTACG----CTAAGGCCCTACCCTTTTCTATCAAGGATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10142945 461 +  10928107 tatttgtataacttctataaacttcaaattatttcCA----TTTTTTTTTAACGACGGGAAGGAAAACAAGTCAATTCCCATTTGGCTTTCTTTGACTCTTTCAAGGTAACT-TATCTAATCAGCAAAGGGAAATCAAGCACAAGTAATAGGAACTAGGATCCCAG-AGGATCAGATAGTAAC-------------TGAGTACTTTTGGAGTCT----CTATTAGAAGAAATAATCTTCTTTTAAACATGCTTTTTAAAGTCTCAAAAAAATCTGCATAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATCTGGCAAAAAGCAGGTGAACAATGACTGCTGAATTCTACTGAAAGAC--AGAGTAC-GTATTCCATAGAGCCAGTATG----CTGAGGCCCTACCCTTTTCTATCAACGATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17223026 460 - 121039945 tatttgtataacttctataaatttgaaattatttcCA-----TTTTTTTTAatgacaggaaggaaaacaagtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaactaggatcccag-aggataagatagtaat-------------tgagtacttTTGGAGTCT----CTATTAGAAGAAATAATCTTCTTTTAAACATGCTTTTTAAAGTCTCAAAAAAATCTGCATAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAATCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATCTGGCAAAAAGCAGGTGAACAATGACTGCTGAATTCTACTGAAAGAC--AGAGTAC-ATATTCCACAGAGCCAGTATG----CTGAGGCTCTACCCTTTTCTATCAAGGATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106697013 459 - 170124641 tatttgtgtaacttctataaatttgaaattatttcCA----TTTTTTTTaaatgataggaaggaacagaagtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggatcccag-aggataagatagtaat-------------tgaatacttTTGGAGTCT----CTATTAGAAGAAATAATCTTCTTTTAAACATACTTTTTAAAGTCTC-AAAAAATCTGCACAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATCTGGCAAAAAGCAGGTGAAA---GACTGCTGAATTCTACTGAAAG----AGAGTAC-ATATTCCATAGAGCCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGGATA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108430602 459 - 171882078 tatttgtgtaacttctataaatttgaaattatttcCA----TTTTTTTTaaatgataggaaggaacagaagtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggatcccag-aggataagatagtaat-------------tgaatacttttggagtct----ctattagaagaaataatcttcttttaaacatactttttaaagtctc-aaaaaatctgcacagatatttgcaggcccacatgtgtaaAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATCTGGCAAAAAGCAGGTGAAA---GACTGCTGAATTCTACTGAAAG----AGAGTAC-ATATTCCATAGAGCCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGGATA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             115047 457 +    130206 tatttgtgtaacttctataaatttgaaattatttcca----ttttttttaaatgataggaaGGAACAGAAGTCAATTCCCATTTGGCTTTCTTTGCCTCTTTCAAGGTAACT-TATCTAATCAGCAAAGGGAAATCAAGCACAAGTAATAGGAACGAGGATCCCAG-AGGATAAGATAGTAAT-------------TGAATACTTTTGGAGTCT----CTATTAGAAGAAATAATCTTCttttaaacatactttttaaagtcTC-AAAAAATCTGCACAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATCTGGCAAAAAGCAGGTGAAA---GACTGCTGAATTCTACTGAAAG----AGAGTAC-ATATTCCATAGAGCCAGTATGCTCCCTGAGGCTC--CCCTTTTCTATCAAGGATA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21119782 459 -  24206276 tatttgtgtaacttctataaatttgaaattatttcCA----TTTTTTTTaaatgataggaaggaacagaagtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggatcccag-aggataagatagtaat-------------tgaatacttTTGGAGTCT----CTATTAGAAGAAATAATCTTCTTTTAAACATAGTTTTTAAAGTCTC-AAAAAATGTGCACAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATCTGGCAAAAAGCAGGTGAAA---GACTGCTGAATTCTACTGAAAG----AGAGTAC-GTATTCCATACAGCCAGTATGCTCCCTGACGCTCTACCCTTTTCTATCAAGGATA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22261072 439 + 158406734 TATTTTTACAACTTCTATAAATTTAAAATTATTTCCA-----TTTTTTTAAATGACAGGAAAGTAAACAAGTCAATTCCCATTTGG------------CTTTCAAGGTAACT-TATCTAATCCACAAAGGGAAATCAAGCAC----AATAGGAATTAGGATCCCAG-AGG-TAAGACAGTAAT-------------TAAGTACTTTTGGAGTCTCTGCCTATTAGAAGAAATAATCTGCTTTTAAGCATGCTTTTTAAAGTCTC-AAAAAATTTGCATAGATATTTGCAGGCCCACATGTATAAGAAGTTGTGCCTTTTCAACCAAGAATATCAACAATCAGCTTTACCACCCTATTCTAATAGCAATTAGCTCAACACTTGGCAAAAAGCAGGTGAAT--------------TCTACCGTAAGACAGAGGGTACTATATTCCATAGAGCCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGAATA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54424924 397 +  91889043 ------TATAACTTCAGT-AATCTGAAATTATTCCCAAACACTCTTTTTAAGTGACACGaaggaaaactagtcaattcccattgga--atctctgtctctttcaaggtaactggatctagcctgaaaag---aatcaagcacaagtaatagggcctagaatcccaGTGGGAGCAGAGGGGGAGGGGCAGGGCATGATAAGTACCTTTGGAGCCTCTTCTTATAAGAAGAAATAATCTTCTTTTAAACAAGCTTTTTAAAGCCTCAAAAACATCTGTATGGATATTTGCAGGCACACATGTATACAAAGTTCTGTCTTCTGTACCAAGC----------------TGGCCAACCCACTCCAACAGTAATTAGCTCAACATCTGGCAGAGAGCAGGGGTTCAGTATCTGCTGAATAGTACTGGAAGG------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I

a score=183276.000000
s hg38.chr15_KI270850v1_alt    353356 112 +    430880 TTCAATTTAAGGACACAATG-G---Ttttttttg-tttttttgttttgttt-------tttttt-gagacggagtctcgctctgttgcccaggctggagtgcggtggcgtgatctcagctcactg
s panTro4.chr15              80134984 113 +  99548318 TTCAATTTAAGGACACAATG-G---TTttttttg-tttttttgttttgttt-------tttttttgagacggagtctcgctctgttgcccaggctggagtgcggtggcgtgatctcagctcactg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10143406 121 +  10928107 TTCAATTTAAGGACACAATG-G---TTTTTtttgttttttttgtttggtttttttgggtttttttgagacggagtctcgctctgttgcccaggctggagtgcggtggtgtgatctcagctcactg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17223486  98 - 121039945 TTCAATTTAAGGACACAAt------ttttttttg--------------ttt-------tttttttgtgatggagtcttgctctgttgcccaggctggagtgcggtggcgtgatctcagctcactg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106697472 108 - 170124641 TTCAATTTAAGGACACAATGTG-Tttttgttttg----ttttgttttgttt-------tttt---gagac--agtctcgctctgttgcccaggctggagtgcagtggtgtgatctcagctcactg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108431061 109 - 171882078 TTCAATTTAAGGACACAATGTGtttttttttttg----ttttgttttgttt-------tttt---gagac--agtctcactctgttgcccaggctggagtgcagtggtgtgatctcaactcactg
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             115504 107 +    130206 TTCAATTTAAGGACacaatgtg--tttttttttg----ttttgttttgttt-------tttt---gagac--agtctcgctctgttgcccagtctggagtgcagtggtgtgatctcagctcactg
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21120241 106 -  24206276 TTCAATTTAAGGACACAATGTG---ttttttttg----ttttgttttgttt-------tttt---gagac--agtctcactctgttgcccaggctggagtgcagtggtgtgatctcagctcactg
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54425321  39 +  91889043 --------------------------------------------------------------AAGGAGAC---ATCACATCCCTTAG----AGCCAGTGTG-----------------CTCACTG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511   0 + 158406734 C

a score=210466.000000
s hg38.chr15_KI270850v1_alt    353468 89 +    430880 caagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacacccggctaa
s panTro4.chr15              80135097 89 +  99548318 caagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacacccggctaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10143527 89 +  10928107 caagctctgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccacacccggctaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17223584 89 - 121039945 caagctctgcctctagggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggcacctgccaccgcacccagctaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106697580 89 - 170124641 caagctccgcctcccgggttcacgccattctcctgcctcagcttcctgagcagctgggaatacaggcaaccgccaccacacttggctaa
i rheMac3.chr7              C 0 I 144
s macFas5.chr7              108431170 89 - 171882078 caagctccgcctcccgggttcacgccattctcctgcctcagcttcctgagcagctgggaatacaggcaaccgccaccacacttggctat
i macFas5.chr7              C 0 I 8
s papAnu2.JH685126             115611 89 +    130206 caagctccgcctcccgggttcacgccattctcctgcctcagcttcctgagcagctgggaatacaggcaaccgccaccacactcggctat
i papAnu2.JH685126          C 0 I 11
s chlSab2.chr29              21120347 89 -  24206276 caagctccgcctcccgggttcacgccattctcctgcctcagcttcccgagcagctgggaatacaggcaactgccaccacactcggctat
i chlSab2.chr29             C 0 I 3
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511  0 + 158406734 C
e canFam3.chr3               54425360  0 +  91889043 C

a score=8721.000000
s hg38.chr15_KI270850v1_alt    353557 13 +    430880 ttttgtgtgtgtg
s panTro4.chr15              80135186 13 +  99548318 ttttgtgtgtgtg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10143616 13 +  10928107 ttttttgtgtgtg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17223673 13 - 121039945 ttttgtgtgtgtg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108431267 12 - 171882078 tttttttttttt-
i macFas5.chr7              I 8 C 0
s papAnu2.JH685126             115711 12 +    130206 tttttttttttt-
i papAnu2.JH685126          I 11 C 0
s chlSab2.chr29              21120439 12 -  24206276 tttttttttttt-
i chlSab2.chr29             I 3 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511  0 + 158406734 C
e canFam3.chr3               54425360  0 +  91889043 C
e rheMac3.chr7              106697669 144 - 170124641 I

a score=32897.000000
s hg38.chr15_KI270850v1_alt    353570 19 +    430880 tgtgtttttagcagagatg
s panTro4.chr15              80135199 17 +  99548318 tgt--ttttagcagagacg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10143629 15 +  10928107 t----ttttagcagagacg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17223686 17 - 121039945 tgt--ttttagcagagacg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106697813 19 - 170124641 tgtatttttagtagagacg
i rheMac3.chr7              I 144 C 0
s macFas5.chr7              108431279 19 - 171882078 tgtatttttagtagagacg
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             115723 19 +    130206 tgtatttttagtagagacg
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21120451 19 -  24206276 tgtatttttaggagagacg
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511  0 + 158406734 C
e canFam3.chr3               54425360  0 +  91889043 C

a score=233471.000000
s hg38.chr15_KI270850v1_alt    353589 103 +    430880 gggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcagcctcccaaagggctggaattacaggcgtgagccactgcgcc
s panTro4.chr15              80135216 103 +  99548318 gggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcagcctcccaaagggctggaattacaggcgtgagccactgcgcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10143644 103 +  10928107 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgtccgcctcagcctcccaaagggctgggattacaggcgtgagccactgcacc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17223703 103 - 121039945 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106697832 103 - 170124641 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagctactgcacc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108431298 103 - 171882078 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagctactgcacc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             115742 103 +    130206 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgaactgcccaccttggcctcccaaagtgctggaattacaggtgtgagctactgcacc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21120470 103 -  24206276 gggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagccactgcacc
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54425360  28 +  91889043 AGGCTACACCCTTTCCATCAAGGTTATT---------------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511   0 + 158406734 C

a score=1545775.000000
s hg38.chr15_KI270850v1_alt    353692 538 +    430880 cagccTAAGGACACAATGTTGACTT-AGAGTGTAATACAGATTTAGGGG--AATAAACCTTAACTCATCCCTACCCAGCCCATCGCCAAAACAGAGGTTTA-AAAAC--CAGTGACTCACCGCATCACA------TCTGCGACAATACTTCTTCCCTGAGTCTCAA----TTTCTTCAAAGAGAA----------------AAAGGTTGAAGAAAGCTCCTCTGCTTGAGGAGGGGCAGGGTGGAAATCACTCTGTCCTAATCAACCCTCCCCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGAAAGAGTGTCTCACTGAATTATATACCAACCACATAGAAAAAC--GGGGAAAGGACTTGGATTGATGGCTCAGAAAGGGGCAATGCCATCCTAGAGAATAGGATCAGGGTGCCCCAGAATTAACAC--GTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAGGGAT-----ATACTGTA--AATTTGACTAGAAGATACCAAGAAGACAAG----------------AGGCCTAGAACTTGCC
s panTro4.chr15              80135319 538 +  99548318 cagccTAAGGACACAATGTTGACTT-AGAGTGTAATACAGATTTAGGGG--AATAAACCTTAACTCATCCCTACCCAGCCCATCGCCAAAACAGAGGTTTA-AAAAC--CAGTGACTCACCGCATCACA------TCTGCAACAATACTTCTTCCCTGAGTCTCAA----TTTCTTCAAAGAGAA----------------AAAGGTTGAAGAAAGCTCCTCTGCTTGAGGAGGGGCAGGGTGGAAATCACTCTGTCCTAATCAACCCTCCCCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGAAAGAGTGTCTCACTGAATTATATACCAACCACATAGAAAAAC--GGGGAAAGGACTTGGATTGATGGCTCAGAAAGGGGCAATGCCATCCTAGAGAATAGGATCAGGGTGCCCCAGAATTAACAC--GTGGA--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAGGGAT-----ATACTGTA--AATTTGACTAGAAGATACCAAGAAGACAAG----------------AGGCCTAGAACTTGCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10143747 538 +  10928107 cggccTAAGGACACAGTGTTGACTT-ACAGTGTAATACAGATTTAGGGG--AATAAACCTTAACTCATCCCTACCCAGCCCATCGCCAAAACAGAGGTTTA-AAAAC--CAGTGACTCACCACATCACA------TCTGCGACAATACTTCTTCCCTGAGTCTCAA----TTTCTTCAAAGAGAA----------------AAAGGTTGAAGAAAGCTTCTCTGCTCGAGGGGGGGCAGGGTGGAAATCACTCTGTCCTAATCAACCCTCCCCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGTCTCACTGAATTATATACCAACCACATAGAAAAAC--AGGGAAAGGACTTGGATTGATGGCTCAGAAAAGGGAAATGCCATCCTAGAGAACAGGATCAGGGTGCCCCAGAATTAACAC--GTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAGGGAT-----ATACTGTA--AATTTGACTAGAAGATACCAAGAAGACAAG----------------AGGCCTAGAACTTGCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17223806 539 - 121039945 cggccTAAGGACACAATGTTGACTT-AGAGTGTAATACAGATTTAGGGG--AATAAACCTTAACTCATCCCTACCCAGCCCATCTTCAAAACAGAGGTTTA-AAAACCACAGTGACTCACCACATCACA------TCTGCGACAGTACTTCTTCCCTGAGTCTCAA----TTTCTTCAAAGAGAA----------------AAAGGTTGAAGAAAGCTCCTCTGCTTGAGGAGGGGCAGGGTGGGAAACACTCTGTCCTAATCAATCCTCCCCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAATGTCTCACTGAATTATATACCAACCACGTAGAAAAAC--AGGGAAAGGACTTGGATTGATGGCTCAGAAAGGGGCAATGCCATCCTAGAGAATAGGATCAGGGTGCCCCAGAATTAACAC--GTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAGGGAT-----ATACTGTA--AATTTGACTAGAAGATACCAAGAAG-CAAG----------------AGGCCTAGAACTTGCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106697935 460 - 170124641 cagccTAAGGACACAATGTTGACTT-AGAGTGTAATACAGATTTAGGGG--AATAAACTTTAACTCATCCCTACCCAGCCCATCACCAAAACAGAGGTTTAGAAAACCACAGTGACTCACCACATCACA------TCTGCGACAGTACTTCTTCCCTGAGTCTCAA----TTTCTTC------------------------------TGAAGAAAGCTCCTCTGCTTGA---GGGGCAGGGTGGAAAACACTCTGTCCTAATCAATCCTTCCCAGACTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGTCTCACTGAATTATATACCAACCACGTAGAAAAAC--AGGGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC--------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAGGCAT-----ATACTGTA--AGTTTGACTAGAAGATACCGAGAAGACAAG----------------AGGCCTAGAACTTGTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108431401 460 - 171882078 cagccTAAGGACACAATGTTGACTT-AGAGTGTAATACAGATTTAGGGG--AATAAACTTTAACTCATCCCTACCCAGCCCATCACCAAAACAGAGGTTTAGAAAACCACAGTGACTCACCACATCACA------TCTGCGACAGTACTTCTACCCTGAGTCTCAA----TTTCTTC------------------------------TGAAGAAAGCTCCTCTGCTTGA---GGGGCAGGGTGGAAAACACTCTGTCCTAATCAATCCTTCCCAGACTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGTCTCACTGAATTATATACCAACCACGTAGAAAAAC--AGGGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC--------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAGGCAT-----ATACTGTA--AGTTTGACTAGAAGATACCGAGAAGACAAG----------------AGGCCTAGAACTTGTC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             115845 460 +    130206 cagcctaaggaCACAATGTTGACTT-AGAGTGTAATACAGATTTAGGGG--AATCAACTTTAACTCATCCCTACCCAGCCCATCACCAAAACAGAGGTTTAGAAAACCACAGTGACTCACCACATCACA------TCTGCGACAGTACTtcttccctgagcctcaa----tttcttc------------------------------tgAAGAAAGCTCCTCTGCTTGA---GGGGCAGGGTGGAAAACACTCTGTCCTAATCAATCCTTCCCAGACTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGTCTCACTGAATTATATACCAACCACGTAGAAAAAC--AGGGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC--------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAGGGAT-----ATACTGTA--AGTTTGACTAGAAGATACCGAGAAGACAAG----------------AGGCCTAGAACTTGTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21120573 460 -  24206276 cagccTAAGGACACAATGTTGACTT-AGAGTGTAATACAGATTTAGGGG--AATAAACTTTAACTCATCCCTACCCAGCCCATCACCAAAACAGAGGTTTAGAAAACCACAGTGACTCACCACATCACA------TCTGTGACAGTACTTCTTCCCTGAGTCTCAA----TTTCTTC------------------------------TGAAGAAAGCTCCTGTGTTTGA---GGGGCAGGGTGGAAAACACTCTGTCCTAATCAATCCTCCCCAGACTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGACGAGTGTCTCACTGAATTATATACCAACCACGTAGAAAAAC--AGGGAAAGGACTTGGATTCACGGCTCAGAAAGGGGCAATGC--------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAGGGAT-----ATACTGTA--AGTTTGACTAGAAGATACTGAGAAGACAAG----------------AGGCCTAGAACTTGTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22261511 544 + 158406734 CAATTTAAGGACACAATGTTGACTTAAGAGTGTAATACAGATTTAGGGG--ACTAAACCTTAACTCGTCCCTACCCAGCTCATAACCAAAACAGAGGTTTAGAGAACAACAGTAACTCACCACATCACA------TTTGTGACAGTacttcttcgctgagtctcaa----tttcttcaaagagaa----------------aaaggctgaagaaacctgctctgcctgagcagggtctgggtggaaatcaCCCTGTCCTGATCAATCCTCCACAGACTCTCCTGGGATCTTCAGGGCCACTGAAATATACTCCCACATTAAAGTAC-AAGGGCAAGGAAGAGTGTCTCACTGAATTATATACCAACCACGTAGAAAAAC--AGGGAAAGGACTTGGATTGATGGCTAGGAAAGAGGCAATGCCATCTTAGAGAATAGGATCAGGGTGCCCCAGAACTAACACATGTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAGGGAT-----ATATTGTA--AGTTTGACTAGTAGACACTGAGAAGACAAG----------------AGGCCTAGAACTTGCC
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54425388 579 +  91889043 CAACTTATGGACACAATACTGACTT-AGAG-GCAACTTGGAACTAGAGGAAAAAAAATCTTAGTTCATTCCAACCCAGCCCATCACCAAAACAGAGGCTGAGAGAAG--TAGCTACTAGCCTTGTCAAATAGAGTTACTTGACAAAACCCCTTCCGCTGGTTTCAAATACTTTCTTTAAAGAGAACTAAACATATATAGGTATAGGTGGAAGAGAGCTACTCTGCTCGAGGAAGGGCAGGTCAGAAGAGTCACTTCCCTG-----------CCA---TCTGTTGGGATCCTCACAGCCATGGGTATATACTTCCATATTCAAGTACGAAGAGCAGGAAAGAGTGCTTCGCTCAACACCATCCCAACCACACAGAAGAACAGAGGAAAAGAGCTTAGATCAATGGCTCAGAAAGGTGCAATGCCATCTGCAGACATAAGATAAGGGTGCCCCAGGATTAACACACTTGGGTCACATCAGCACCTCCAT---GCAGTTTCCTGCAAATATGACAGTGGAAGGGGCCAAGGATATTGTAGGAGTTTGGCTACAAGATACAAGGAAGACAAGAAAACCTAATATGAAAAGGCTTAGGATTTTCC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I

a score=472994.000000
s hg38.chr15_KI270850v1_alt    354230 115 +    430880 AGCTGGTTTGATATTTCCTTCAACCCACAGAACAAGTGAATTTTGTGGAAACTGCCACCCATGGTC-AGATGCCCTAGAGTGACCTAATTGT-------------ACCTCTATAGGGTCTGGCCAGGCA
s panTro4.chr15              80135857 115 +  99548318 AGCTGGTTTGATATTTCCTTCAACCCACAGAACAAGTGAATTTTGTGGAAACTGCCACCCATGGTC-AGATGCCCTAGAGTGACCTAATTGT-------------ACCTCTATAGGGTCTGGCCAGGCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10144285 115 +  10928107 AGCTGGTTTGGTATTTCCTTCAACCCACAGAACAAGTGAATTTTGTGGAAACTGCCACCCATGGTC-AGATGCCCTAGAGTGACCTGACTGT-------------ACCTCTATAGGGTCTGGCCAGGCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17224345 115 - 121039945 AGCTGGTTTGCTATTTCCTTCAACCCACAGAACAAGTGAATTTTGTGGAAACTGCCACCCATGGTC-AGATGCCCTAGAGTGACCTGATTGT-------------ACCTCTACAGGGTCTGGCCAGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106698395 115 - 170124641 AGCTGGTTTGATATTTCCTTCAAGTCACAGAACAAGTGAATTTTGTGGAAACTGCCACCCATGGTC-AGATGCCCTAGAGTGACCTGATTGT-------------ACCTCTATAGGGTCTGGCCAGGCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108431861 115 - 171882078 AGCTGGTTTGATATTTCCTTCAAGTCACAGAACAAGTGAATTTTGTGGAAACTGCCACCCATGGTC-AGATGCCCTAGAGTGACCTGATTGT-------------ACCTCTATAGGGTCTGGCCAGGCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             116305 114 +    130206 AGCTGGTTTGATATTTCCTTCAAGTCACAGAACAAGTGAATTTTGTGGAAACTGCCACCCATGGTC-AGATGCCCTAGAGTGACCTGATTGT-------------ACCTCT-TAGGGTCTGGCCTGGCA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21121033 115 -  24206276 AGCTGGTTTGATATTTCCTTCAAGTCACAGAACAAGTGAATTTTGTGGAAACTGCCACCCATGGTC-AGACGCCCTAGAGTGACCTGATTGT-------------ACCCCTACAGGGTCTGGCCAGGCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22262055 116 + 158406734 AGCTGGTTTGATATTTCCTTCAACCCACAGACAAAGTGAATTTTGTCGAAACTGCCACTCATGGTCAAGATGCCCTAGAGTGACCTGACTGT-------------ACCTCCACAGGGCCTGGCCAGGCA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81367909 113 + 145441459 AGCTGGCTTGAGATCTCTTTCAGCCCACAGAATGAGCCAAGTTTCTGGAAACTGTGACCCACAGTC-AGATGCCCTCGAGTGACCTGACTGT-------------CCCTTTACA--GCCCAACCCGGCA
i mm10.chr7                 I 190 C 0
s canFam3.chr3               54425967 128 +  91889043 AGGTGTTTTGATATTTCCTTCAACCTACAGAGGGAGCCAGGTTTCTGGAAACTGTCACGTATGGTC-AGATGCCCTGGAGTAACCTAACTATTCTGATATAGTCAACTCACACAGGGCCTGGCCAGGTA
i canFam3.chr3              C 0 C 0

a score=2353318.000000
s hg38.chr15_KI270850v1_alt    354345 722 +    430880 GTTCTCTGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGACAATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGTGGGGGGACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCC-----CAGCTCATGAGACCATACCTGCCCTA-TGTAAGGTTGCTGAGTACGCAGCACCGATTTCCACCAGCTGGGAATCAGAAGGAAAGGAGCAAAATAGCTAGCGTTAGACTGTTCCC---ATTTATATTCAAAGCCACGAGCATACCTAACTGGAAAGGCATTCTCTTTAAGCCACACAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTGTCTCATCTCAAAGTCCACTCCCCATCATGGGGCACACAACTTCA-TAATTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGGGGGAGGGGTGGTGAGAAGTCCTAGAGTCAATCTCCAATAACGGCCAAGGCCCTGACCTCTTTGCTCTGTTCTTTCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGGTAAGA----CATTGTGCTCTTCCTAGAACAGACGTACCCATCCCCATTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCATGGGGAGGAGAGGACCTGGCA
s panTro4.chr15              80135972 722 +  99548318 GTTCTCTGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGACAATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGTGGGGAGACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCC-----CAGCTCATGAGACCATACCTGCCCTA-TGTAAGGTTGCTGAGTACGCAGCACCGATTTCCACCAGCTGGGAATCAGAAGGAAAGGAGCAAAATAGCTAGCGTTAGACTGTTCCC---ATTTATATTCAAAGCCACGAGCATACCTAACTGGAAAGGCATTCTCTTTAAGCCACACAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTGTCTCATCTCAAAGTCCACTCCCCATCATGGGGCACACAACTTCA-TAATTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGAGGGAGGGGTGGTGAGAAGTCCTAGAGTCAATCTCCAATAACGGCCAAGGCCCTGACCTCTTTGCTCTGTTCTTTCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGGTAAGA----CATTGTGCTCTTCCTAGAACAGACGTACCCATCCCCATTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCATGGGGAGGAGAGGACCTGGCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10144400 722 +  10928107 GTTCTCTGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGACAATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGTGGAGGAACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCC-----CAGCTCATGAGACCATACCTGCCCTA-TGTAAGGTTGCTGAGTATGCAGCACCGATTTCCACCAGCTGGGAATCAGAAATAAAGGAGCAAAATAGCTAGCGTTAGACTGTTCCC---ATTTATATTCAAAGCCATGAGCATACCTAACTGGAAAGGCATTCTCTTTAAGCCACATAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTGTCTCACCTCAAAGTCCACTCGCCATCATGGGGCACACAACTTCA-TAATCCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGGGGGAGGGGTTGTGAGAAGTCCTAGAGTCAATCTCCAATAATGGCCAAGGCCCTGACCTCTTTGCTCTGTTCTCTCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGGTAAGA----CATTGTGCTCTTCCTAGAACACACGTACCCATCCCCATTCACATGCTGGCAGGAA-----TTCAGCTACAGACATCTCTCAGGGAAGTCATGGGGAGGAGAGGACCTGGCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17224460 722 - 121039945 GTTCTCTGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGGCAATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGTGGGGGGACCTCATTTCAATAAA-GAAAGCCTGTCTTGCTCC-----CAGCTCATGAGACCATACTTGCCCTA-TGTAGGGTTGCTGAGTACACAGCACCGATTTCCACCAGCTGGGAATCAGAAGGAAAGGAGCAAAATAGCTAGCGTTAGACTGTTCCC---ATTTATATTCAAAGCCATGAGCATACCTAACTGGAAAGGCATTCTCTTTAATCCACACAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTGTCTCATCTCAAAGTCCACTCCCCATCATGGGGCACACAACTTCA-TAATTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGGGGGAGAGGTAGTGAGAAGTTCTAGAGTCAATCTCCAATAATGGCCAAGGCCCTGACCTCTTTGCTCTGTTCTCTCCTGGCCTCCAGAACACAGGAGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGGTAAGA----CATTGTGCTCTTCCTAGAACAGAGGTACCCATCCCCATTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCACGGGGAGGAGGGGACCTGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106698510 701 - 170124641 GTTATCTGAGTATCTACA--------GAAGGAAAGCAGCAAAGACAATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGTGGGGGGACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCC-----CAGCTCATGAGACCATACTTGCCCTA-TGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGTCAGAAGGAAAGGAGCAGAATAGCTAGCATTAGACTGTTCCC---ATTTATATTCAAAGCCACGAGCATACCTAACTGGAAAGGCATTCTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTACAAAGCAGGCCAGTGTCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGGTGGTAAGACATCCTAGAGTCAACCTCCAATAATGGCCAAGACCCTGACCTCTTTGCTCTGTTCTCTCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATGGGTAAGA----CATTGTGCTCTTCCTAGAACAGAGGTACCCATCCCCACTCACATGCTGGCAGAAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCACGGGGAGGAGACGACCTGGCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108431976 701 - 171882078 GTTATCTGAGTATCTACA--------GAAGGAAAGCAGCAAAGACAATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGTGGGGGGACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCC-----CAGCTCATGAGACCATACTTGCCCTA-TGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGTCAGAAGGAAAGGAGCAGAATAGCTAGCATTAGACTGTTCCC---ATTTATATTCAAAGCCACGAGCATACCTAACTGGAAAGGCATTCTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTACAAAGCAGGCCAGTGTCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGGTGGTAAGATGTCCTAGAGTCAACCTCCAATAATGGCCAAGACCCTGACCTCTTTGCTCTGTTCTCTCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATGGGTAAGA----CATTGTGCTCTTCCTAGAACAGAGGTACCCATCCCCACTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCACGGGGAGGAGAGGACCTGGCA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             116419 701 +    130206 GTTATCTGAGTATCTACA--------GAAGGAAAGCAGCAAAGACAATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGTGGGGGGATCtcatttcaagaaa-gaaaacctGTCTTGCTCC-----CAGCTCATGAGACCATACTTGCCCTA-TGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGTCAGAAGGAAAGGAGCAAAATAGCTAGCATTAGACTGTTCCC---ATTTATATTCAAAGCCACAAGCATACCTAACTGGAAAGGCATTCTCTTTAAGCCACACAAAC--AAATCTAGTGGAAATGACAGGTCCCTTATAAAGCAGGCCAGTGTCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGGTGGTAAGACGTCCTAGAGTCAACCTCCAATAATGGCCAAGACCCTGACCTCTTTGCTCTGTtctctcctggcctccagaatACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCTTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATGGGTAAGA----CATTGTGTTCTTCCTAGAACAGAGGTACCCATCCCCACTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCACGGGGAGGAGAGGACCTGGCA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21121148 698 -  24206276 GTTATCTGAGTATCTACA--------GAAGGAAAGCAGCAAAGACAATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGTGGGGGGACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCC-----CAGTTCATGAGACCATACTTGCCCTA-TGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGTCAGAAGGAAAGGAGCAAAATAGCTAGCATTAGACTGTTCCC---ATTTATATTCAAAGCCACGAGCATACCTAACTGGAAAGGCATTCTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTATAAAGCAGGCCAGTGTCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGG---GGTAAGACGTCCTAGAGTCAACCTCCAATAACGGCCAAGACCCTGACCTCTTTGCTCTGTTCTCTCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCGTATCTTCTAGAAATGGGTAAGA----CATTGTGCTCTTCCTAGAACAGAGGTACCCATCCCCACGCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCACGGGGAGGAGAGGACCTGGCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22262171 702 + 158406734 GTTTTCTGAGTATCTACAGATCAAAGGAAGGAAAACAGCAATTACATTGG----------------------GTTCCTAGGGAAGTGGGGGGACTTCATTTCAAGAAA-GGAAGCCTGTCTTG-TTC-----CAGCTCATGAGACCACACTTGCCGTA-TGTAGGGTTGCTGAGTAAGCAGCACCGATTTCTACCAGCTGGGAATCAGGAGGAAAGAAACAAAACAGCTAGCATTAGACTGTTCCC---TTTTAGATTCAAAGCCACAAG-ATACCTAACTGGAAAGGTACTCTCTTTAAGCCACAGAAACTAAAATCCAGTGGAAATAACAGGTCCCTTATAATGCAAGTCAGTGTCTCATCTCAAAGTCCACTCTCCATCATGGGATACACAACTTCC-TAAGTCCAAATGTCAAATATT---AACCTAGATGGATTAGAGGAAGGGGAGGGGTGGTGAGAAGTCCTAGAGTCAACCCCCAATAATGGCCAAGGCCCTGACCTCTTTGCTCCGTTCTCTCCTGGCCTCTAGAATGCAAGGGATCATGGAAAGTATGAGG-TATACCAAGTACCTCCAGCTCTGGTGTCCAGGTGTCCAGCAAATCTCCATCTTCTAGAAGTGGGTAAGA----CATTGTGCTCTTCCTAGAACAGAAGTACCCATCCCCACTCACATGCTGGCAGGAATCGGCATCCGCCACAGATATCTCTCAGAGAAGTCAC-GGGAGGAGAGGACCTGGCA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54426095 682 +  91889043 GTTCTTTGAATATCTATAGATCACAGGAA-----------------------------------------AAGTTTCTAGGGAA--GATGGGACCTCATCTCAAGAGATGGAAACCTGTCTTGTTCCTGGTTCAGGTCAGGAGACCATACTTCCCCTGCTGTAAGGGTGCTGGGTGGCCAGCACAGATCTCCACCAGCTGAGAATCGGGAGGGAAGGAGCCAAACAGCTAGCAACTGATGGTTTCCCTACTCCTAACTTGAAGTAGGAGGTCTATCT-ACTGGAAAAGCACACTC--TAAGCTACATAACCT-AAACCCAATGTAAGCAATAGGTCACTTATACTGCAGGCCAGTAACCTATCTCGAAGTCCACTCCCCATCACAGGGCACAGAGCTTCACCAAGGCCAGGTGTCAAGTATTAACAACCCAGACGGCTTAGGGGGTGGGGAGTGTGGGAGAGAAGTCC-ATAGGCACCCC-----AGGAGCCAAG-CCCTGATCTCTCTGCTCTAT----TCCTGAACTCTACAGCTCCAG-GACTATAGGAAGCCTGAGC-TTTACCAAGTGCCTCCAGC-CTGGTAGCCAAGCGTATGGC--ACTTGTATCCTCCAAAAGTGACTAAGAAAAGCAGTGTGCTCTTCCTGGAGCAGAGGCACTCATCCCCACTCACATGCTGGCAAGAATCAGCATCAGCTACAGACAGCTCTCAG-GAAGTCACGGGGAGGAGAGGACCTGGCA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81368022   0 + 145441459 C

a score=1744992.000000
s hg38.chr15_KI270850v1_alt    355067 449 +    430880 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTGA-TATTTTTAGACTGATTGTTAATTTTCTCTACTTTCACCCT----TCTATGCCAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCAAATTTTCGGAAGCCT-------TCCCCAAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAGCCTGGCACTGAATGCCTGCATTATAAGACC---ATCTGAGCTTGAGCTTAGCTGAAGGAGAGACTAGCCCCAAGACATGATGGTCAGATATTTGTTATCTAATGGGAATAGTCTAATGGGGGAAAAAATCTAACGGGGAAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAGGCCGTATACCTGGAACCCTTCTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTTAC
s panTro4.chr15              80136694 449 +  99548318 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAATTTTCTCTACTTTCACCCT----TCTATGCCAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCAAATTTTTGGAAGCCT-------TCCCCAAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAGCCTGGCACTGAATGCCTGCATTATAAGACC---ATCTGAGCTTGAGCTTAGCTGAAGGAGAGACTAGCCCCAAGACATGATGGTCAGATATTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAACGGGGAAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAGGCCGTATACCTGGAACCCTTCTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTTAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10145122 449 +  10928107 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAAAGGCCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAATTTTCTCTACTTTCACCCT----TCTATGCCAACTCCTGTCGGTTTTACAGCTGAGTCATTGTTCAAATTTTCGGAAGCCT-------TCCCCAAGAGTGCAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAGCCTGGCACTGAATGCCTGCATTATAAGACC---ATCTGAGCTTAAGCTTAGCTGAAGGAGAGACTAGCCCCAAGATATGATGGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCAAGAGCCATTATTTCTAGCCTGTGATATAAGGCCATATACCTGGAACCCTTCTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTTAC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17225182 449 - 121039945 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGAATGATTGCTAATTTTCTCTACTTTCACCCT----TCTATGCCAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTCGGAAGCCT-------TCCCCAAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAGCCTGGCACTGAATGCCTGCATTATAAGACC---ATCTGAGCTTGAGCTTAGCTGAAGGAGAGACTAGCCCCAAGACATGATGGTCAGGTGCTTGTTATCTAATGGAAATAGTCTAATGGGGAAAAAAATCTAATGGGTAAAATCCAGACCAGGAGCCATTATTTCTAGCCTATGATATAAGGCCGTATACCTGGAACCCTTCTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTTAC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106699211 444 - 170124641 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TCTATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCCAAGAGTACAAAGGCACCTGAAGTGTGATGGCAGCATTAGCAACGGCAACAAGGGCCTGGCAGTGAATGCCTGCATTGTAAGACT---GTCTGAGCTTTAGCTTAGCTGAAGGAGACACTAGCCCCAAGACATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCGGGAGCCATTATTTCTAGCC-----TATAAGGCCGTATACCTGGAACCCTTCTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTCGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108432677 444 - 171882078 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TCTATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCCAAGAGTACAAAGGCACCTGAAGTGTGATGGCAGCATTAGCAATGGCAACAAGGGCCTGGCAGTGAATGCCTGCATTGTAAGACT---GTCTGAGCTTTAGCTTAGCTGAAGGAGACACTAGCCCCAAGACATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCGGGAGCCATTATTTCTAGCC-----TATAAGGCCGTATACCTGGAACCCTTCTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTCGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             117120 444 +    130206 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TCTATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCCAAGAGTACAAAGGCACCTGAAGTGTGATGGCAGCATTAGCAATGGCAACAAGGGCCTGGCAGTGAATGCCTGCATTGTAAGACT---GTCTGAGCTTTAGCTTAGCTGAAGGAGAGACTAGCCCCAAGACATGATAGTCAGATGCTTGTTATCTAATGGGAATAGtctaatggggaaaaaaatctaatgggGAAAATCCAGACCGGGAGCCATTATTTCTAGCC-----TATAAGGCCGTATACCTGGAACCCTTCTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTCGC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21121846 449 -  24206276 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TCTATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCCAAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGGGCCTGGCAGTGAATGCCTGCATTGTAAGACT---GTCTGAGCTTTAGCTTAGCTGAAGGAGAGACTAGCCCCAAGACATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCCGGAGCTATTATTTCTAGCCTATGATATAAGGCCGTATACCTGGAACCCTTCTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTCGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22262873 432 + 158406734 GAGTGTGCCAGTTCATTAATGCTACCTCAGAGAGTATGAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTCCTTTCACCCT----TCTATGCCAGCTCCTGTCGGTTTCACAGCTGAGTCACTGTTCGAATTTTCGGAAGCCT-------TCCCCAAGAGTACAAAGGCACCTAGAGTGTGATAGCAGCATCTGCAATGGCAACAAGGGCTTGGCACTGTATGTCTGTATTATAAGACC---GTCTGAGGTTGAGCTTAGTTGAAGCAGAGACTAGCCCCAAAACATGATAGTCAAATGCTTGTTACCTAATGGGAATAGTCTAATGGGG-----------------AAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAATCCATACACCTGAAACTCTTCTTCCCCATCGCCATCCTTGGTT-CT-AGGATGCTTGC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81368022 402 + 145441459 GAAGGTTCCAACTCATTAATGCCATTTCAGA--GCACAAGAGACCAAATCAGCAGTAATTATTTTTAGACTGATTTTAAACTTTCTCTACTTTCAGCCTTCTCTCTATGCCAGGTCT--CCAGTTTTTCAGCTGAGTCACTGTTGGAATTTTCTGAAGCCTGCCTCCCTCTCCAAGAGTCTAAAGGTGCCCAGA-TCTGATGTTAGCACTGGCAA---CAGTAGTGGGTTGGGACTGGAGGCCGTTATCACAAGACACAGCTCTCAGCTCAAGCTCA--------------------CAGGACACAATCATCAAATACTTGTAATCT-ATAAGTGCAGTC-------------------ACAGGGAAAATCTTG-----GAGCCATCACTCCAATCCTAGG-TGTATGGCTGTATACTGGAAGC---------CTATGTGTACCCTTAGTT-CTGAGGCTGCCTGC
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54426777 428 +  91889043 GAGGGTTCCAGCTCATTAATGCTACCTCAGAGGGTACAAGAGACCAAATCAGCAGTAA-TATTTTTAGACCGACTGTTAACTTTCTCCACTTTCACCCT----TCTACGCCAGCTCCTGTGGGTTTTATAGCTGAGTCACTGTTTGAATTTTCTGAAGCCT-------TCCCCAAAAGTACAAAGTCACCCAGAGTCTGATGGTGGCAGCAGCAATGGTAGTAAGAGCTTGGCACTAGATGTGGGTATTGCAAGACC-----CTACGTTTAAGCTCAG-TAGGGGAGAGACTAGGCCTAAGACATTACAGTCAGATGCCTGCTATCTACTGGGAGTAGTC-------------------ATGGAAAAAGCCCAGACCAGGAGCCATTATTTCTAGCCTGAGATTTAGGACCACATACTAGAACTGTTCCTTTCCTATCACAACCCTTGGGCACC-GGACTGCTTGC
i canFam3.chr3              C 0 C 0

a score=2130163.000000
s hg38.chr15_KI270850v1_alt    355516 630 +    430880 TCAGGATCTCTCTGAAGGAATAG-----GAAGGGGGGAGAGTAGCATTCATTCCATGTATGAAAACAGACCACTC--TGCCTGTGACCCCAAATCTGCAACTCTATACCATATCTCTACT---GTGGCGGTAAAC---AGAGTGTGGACTTCCCC--CCGACTGTGGATCCCACAAGTTCAAGTTAGTGACAAACACAGCCCTTCTCCCCAGTATAACTCCCAGTCTTGATCATCAGGCAAGTTCCATTACCTGTAGAAAAGACATATTCATGTCCCTTGTAAGGTCAGCACACATCCTGCCCCTGTCACTAACCACCT------CAACTTCTTTCTCACCTAGGAGGCCT-CCCTGGCCACACTGCTTCCCAGGTTCTCCCTCCTCTC-TGCACTGAAAGCT-TTCCCAAATAGACTACTTGACTCCACAATACAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAATTACATCACCGTCCCCTAGAAGCTAC--AGGGCCCAAGATACTGATCTTTGAAGA--AT-CTGTCCATCCAGCTAAATCAACACAAGCAGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTTAAAAAACAACCAGGA-TA--AACACAGTGGCTCAGCACTCAtcattcattcaaaaaat
s panTro4.chr15              80137143 630 +  99548318 TCAGGATCTCTCTGAAGGAATAG-----GAAGGGGGGAGAGTAGCATTCATTCCATGTATGAAAACAGACCACTC--TGCCTGTGACCCCAAATCTGCAACTCTATACCCTATCTCTACT---GTGGCAGTAATC---AGAGTGTGGACTTCCCC--CCGACTGTGGATCCCACAAGTTCAAGTTAGTGACAAACACAGCCCTTCTCCCCAGTATAACTCCCAGTCTTGATCATCAGGCAAGTTCCATTACCTGTAGAAAAGACATATTCATGTCCCTTGTAAGGTCAGCACACATCCTGCCCCTGTCACTAACCACCT------CAACTTCTTTCTCACCTAGGAGGCCT-CCCTGGCCACACTGCTTCCCAGGTTCTCCCTCCTCTC-TGCACTAAAAGCT-TTCCCAAATAGACTACTTGAGTCCACAATACAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAATTACATCACCGTCCCCTAGAAGTTAC--AGGGCCCAAGATACTGATCTTTGAAGA--AT-CTGTCCATCCAGCTAAATCAACACAAGCAGGAGGCAGAAGGATGGGAGAGACCTTGTCTGAACTCTGCAGTTAAAAAACAACCAGGA-TA--AACACAGTGGCTCAGCACTCAtcattcattcaaaaaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10145571 629 +  10928107 TCAGGATCTCTCTGAAGGAATAG-----GAAGAGGGGAGAGTAACATTCATTCCATGTATGAAAACAGACCACTC--TGCCTGTGACCCCAAATCTGCAACTCTATACCATATCTCTACT---GTGGCAGTAATC---AGAGTGTGGACTTCCCC--CCGACTGTGGATCCCACAAGTTCAAGTTAGTGACAAACACAGCCCTTCTCCCCAGTATAACTCCCAGTCTTGATCATCAGGCAAGTTTCATTACCTGTAGAAAAGACATATTCATGTCCCTTGTAAGGTCAGCACACATCCTGCCTCTGTCACTAACCACCT------CAACTTCTTTCTCACCTAGGAGGCCTCCCCTGGCCACACTGCTTCCCAGGTTCTCCCTCCTCTC-TGCACTGAAAGCT-TTCCCAAATGGACTACTTGACTCCACAATAGAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCGTCCCCTAGAAGCTAC--AGGGCCCAAGATACTGATCTTTGAAGA-----CTGTCCATCCAGCTAAATCAACACAAGCAGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAATTCTGCAGTTAAAAAACACCCAGGA-TA--AACACAGTGGCTCAGCACTCAtcattcattcaaaaaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17225631 617 - 121039945 TCAGGATCTCTCTGAAGGAACAG-----GAAGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGCCTGTGACCCCAAATCTGCAACTCTATACCATATCTCTACT---GTGGCAGTAATC---AGAGTGTGGAATTCCCC--CCGACTGTGGATCCCGCAAGTTCAAGTTAGTGACAAACACAGCCCTTCTCCCCAGTATAACTCCCAGTCTTGATCATCAGGCAAGTTCCATTACCTGTAGAAAAGACATATTCATGTCCCTTGTAAGGTCAGCACACATCCTGCCCCTGTCACTAACCACCT------CAACTTCTTTCTC--------------ATCTGGCCACACTGCTTCCCAGGTTCTCCCTCCTCTC-TGCATTGAAAGCT-TTCCCAAATAGACTACTTGACTCCACAATAGAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCGTCCCCTAGAAGTTAC--AGGGCCCAAGATACTGATCTTTGAAGA--AT-CTGTCCATCCAGCTAAATCAACACAAGCAGGAGGCAGAAGAATAGGAGAGACCTTGTCTGAACTCTGCAGTTAAAAAACGCCCAGGA-TA--AACACAGTGGCTCAGCACTCAtcattcattcaaaaaat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106699655 629 - 170124641 TCAGGATCTCTCTGAAGGAACAG-----GAAGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGCCTGTGACCCCAAATCTGCAACTCTATACCATATCTCTACT---GTGGCAGTAATC-----AGTGTGGACTTCCCCCTCCAACTGTGGATCCCACAAGTTCAAGTTAGTGACAATCACAGCCTTTCTCCCCAGTATAACTCGCAATCTTGATCATCAGGCAAGTTCCATTACCTGCAGAAAAGACATATTCATGTCCCTTGTAAGGTCAGCACACATCCTGCCCCTGTTACTAACCACCT------CAACTTCTTTCTCACCTAGGAGTCCT-CCCTGGCCACACTGCTTCCCAGGTTCTCCCTC--CTC-TGCACTGAAAGCT-TTCCCAAATAGACTACTTGACTCCACGATAGAGCTCATCCTCCACTATATGATGAAAACTTTGTATAAGTACATCACCATCCCCTAGAAGCTAC--AGGGTCCAAGATACTGATCTTTGAAAA--AT-TTGTCCATCCAACTATTTCAACACAAGCGGGAGGCAGAAGAATGGGAAAGACCTTGTCTGAACTCTGCAGTGAAAAAACACCCAGGATTA--AACACAGTGGCTCAGCACTCAtcactcattcaaaaaat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108433121 629 - 171882078 TCAGGATCTCTCTGAAGGAACAG-----GAAGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGCCTGTGACCCCAAATCTGCAACTCTATACCATATCTCTACT---GTGGCAGTAATC-----AGTGTGGGCTTCTCCCTCCAACTGTGGATCCCACAAGTTCAAGTTAGTGACAATCACAGCCTTTCTCCCCAGTATAACTCGCAATCTTGATCATCAGGCAAGTTCCATTACCTGCAGAAAAGACATATTCATGTCCCTTGTAAGGTCAGCACACATCCTGCCCCTGTTACTAACCACCT------CAACTTCTTTCTCACCTAGGAGTCCT-CCCTGGCCACACTGCTTCCCAGGTTCTCCCTC--CTC-TGCACTGAAAGCT-TTCCCAAATAGACTACTTGACTCCACGATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCATCCCCTAGAAGCTAC--AGGGTCTAAGATACTGATCTTTGAAAA--AT-TTGTCCATCCAACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAAAGACCTTGTCTGAACTCTGCAGTGAAAAAACACCCAGGATTA--AACACAGTGGCTCAGCACTCAtcactcattcaaaaaat
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             117564 629 +    130206 TCAGGATCTCTCTGAAGGAATAG-----GAAGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGCCTGTGACCCCAAATCTGCAACTCTATACCATATCTCTACT---GTGGCAGTAATC-----AGTGTGGACTTCCCCCTCCAACTGTGGATCCCACAAGTTCAAGTTAGTGACAATCACAGCCTTTCTCCCCAGTATAACTCGCAATCTTGACCATCAGGCAAGTTCCATTACCTGCAGAAAAGACAtattcatgtcccttgtaagGTCAGCACACATCCTGCCCCTGTTACTAACCACCT------CAACTTCTTTCTCACCTAGGAGTCCT-CCCTGGCCACACTGCTTCCCAGGTTCTCCCTC--CTC-TGCACTGAAAGCT-TTCCCAAATAGACTACTTGACTCCACGATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCATCCCCTAGAAGCTAC--AGGGTCCAAGATACTGATCTTTGAAAA--AT-TTGTCCATCCAACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTGAAAAAACACCCAGGATTA--AACACAGTGGCTCAGCACTCAtcactcattcaaaaaat
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21122295 627 -  24206276 TCAGGATCTCTCTGAAGGAATAG-----GAAGAGGAGAGAGTAGTATTCATTCCAGGTATGAAAACAGACCACTC--TGCCTGTGACCCCAAATCTGCAACTCTATACCATATCTCTACT---GTGGCAGTAATC-----AGTGTGGACTTCCCCCTCCGACTGTGGATCCCACAAGTTCAAGTTAGTGACAATCACAGCCTTTCTCCCCAGTATAACTTGCAATCTTGATCATCAGGCAAGTTCCATTACCTGCAGAAAAGACATATTCATGTCCCTTGTAAGGTCAGCACACATCCTGCCCCTGTTACTAACCACCT------CAACTTCTTTCTCACCTAGGAGTCCTCCCCTGGCCACACTGCTTCCCAGGTTCTCTCTC--CTC-TGCACTGAAAGCT-TTCCCAAATAGACTACTTGACTCCACAATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTAC---TACATCACCATCCCCTAGAAGCTAC--AGGGTCCAAGATACTGATCTTTGAAAA--AT-TTGTCCATCCAACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTGAAAAAACACCCAGGATTA--AACACAGTGGCTCAGCACTCAtcactcattcaaaaaat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22263305 638 + 158406734 TCAGGATCTCTCTGAAGGCACAG-----GAAGCGGGGAGAGAAGCATTCATTCTAGGTATGAAAACAGACCACTC--TGCCTGTGACTCCAAATCTGCAACTCTACGCCACATCTCAACC---GTGGTGGTAATGATGAGAGTGTGGACTCCCCCTGCTGACTGTGGATCCCACAAGTTCAAGTTAGTGACAAACACAGCCCTTCTCCCCAGTGT-ACACCCAGTCCTGATCACCAGGCAAGTTCCATTACCTACAGAAAAGGCATATTCATGTCCCTTGTAAGGTCAGCACACATCCTGCCCCTGTTACCAATCAACCCCCTCACAACCTCTTTCTCACATTGGAGGCCT-CCCTGGTCACACTGCTTCTGAGGTCCTCCCTCCTCAC-TGCACCAAAAGCT-TTCCCAAACAGACTACTTGACTCCACAATAGAACTCATGCTCCACTGTATGATGAATACTTTGTATAAATAAATCACCATGCCCTAGAAGCTAC--AGGGCCCAAGATACTGATCTTTGAAGA--ATCTTGTCCATCCAGCTAAATCAACACAAGCAGGAGGCAGA---ATAGGAGAGACCTCGTCTGAAATCTGCAGTTAAAAAACACCCAGGA-TA--AACACAGTGGCTCTGCACTCAtcattcattcaaaaaac
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54427205 611 +  91889043 TCAAAATCCATCTGAAGGCACAGAGGTAGGAAGGGGGAGGGCAGCACTCATTCTAGGTATAACAACAGATTGCTCTTTGCCTAGAACTCCAATGCTGCAACTATACACCATACCCCAACTTAAGTGGCAGTCTCC---AGAGTGT-CAGTGCCTCTACTGACTCTGGATCCCACAGGTCCAAGGTGGTACCAAATATAGCCTTTCTCCC--------------ATCTTGATCATTGGACAAGTTTCATTACCTAAAGAAATGATATACCCAAGTCCCATGTAAGGTCAGCACAC-TCTCTCTCCTAC------------------CCATTTCTTTCTCACCTAGGAGGCAC-C----------CTGCTTCCCCGGCCCTCCCTCCTCTCTTGCATTGAAAGCTATTCCTCAGCAGACTACCTGACCCCGTGATAGAATTCATGTTCCAGTGTATGAC-AAAATTTTCTGTAAATGCATCTTCATGCCGTAGAAGCTATGGAGGTTCAGAGATACTGATTTTTGAAAAAAAT-CTATCCATCCAGCTG-ACCATAACAAGTAGGAGGCAGAAGAATGGGAGAGACCTTGACCATATTCTACAGTTCAAAACTACCCAGGATTAACACCACAGTGGCTCAGCATTCATCGTTCATTCAATAGAT
i canFam3.chr3              C 0 I 162
e mm10.chr7                  81368424   1 + 145441459 I

a score=181152.000000
s hg38.chr15_KI270850v1_alt    356146  62 +    430880 atgtattagac-------------------------------------------agccattagccaagcactgttgtac-tgctgggaatatagtattggagaaCT
s panTro4.chr15              80137773  62 +  99548318 atgtattagac-------------------------------------------agccattagccaagcactgttgtac-tgctgggaatacagtattggagaaCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10146200  62 +  10928107 atgtattagac-------------------------------------------agccattagccaagcactgttctac-tgctgggagtacagtagtggagaaCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17226248  58 - 121039945 atgtatt-----------------------------------------------agccattagtcaagcactgttcttc-tgctgggaatacagcagtggagaaCT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106700284  58 - 170124641 atgtatt-----------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108433750  58 - 171882078 atgtatt-----------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             118193  58 +    130206 atgtatt-----------------------------------------------agcCATTAGCCAAGCACTATTCTAC-TGCTGGGAATACAGTAGTGGAGAACT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21122922  58 -  24206276 atgtatt-----------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22263943  58 + 158406734 atgtatt-----------------------------------------------agccattaaccaggcactgttttac-tgctgggaacacagtagtggaaaaCT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54427978 106 +  91889043 atggataaaatctttaaaaaaaaaaaaaaaaaaaaaaaaaGGTTCCTTATAAAAAGCCACGAgccaggcactgtgctacatgctggggatagaatagtgatgaact
i canFam3.chr3              I 162 C 0
e mm10.chr7                  81368424   1 + 145441459 I

a score=804729.000000
s hg38.chr15_KI270850v1_alt    356208 220 +    430880 -GGGAGTTGAGGAAGATTTACAAGAGACC--TGGTTGGGCCGAGGAAGTCCATGTTCCACATAAGAGAGACCTAATCCCGTTCTGAATGTCGCCTCAGAATGGTTGTTTGGAAGA-----AGCTTCAGATGAAAATTGCTTAAGACTCCCCACTCATCTTAGGCTGATGTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACATTCCATTC-AC
s panTro4.chr15              80137835 220 +  99548318 -GGGAGTTGAGGAAGATTTACAAGAGACC--TGGTTGGGCCGAGGAAGTCCATGTTCCACATGAGAGAGACCTAATCCCGTTCTGAATGTCGCCTCAGAATGGTTGTTTGGAAGA-----AGCTTCAGATGAAAATTGCTTAAGACTCCCCACTCATCTTAGGCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACATTCCATTC-AC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10146262 221 +  10928107 -GGGAGTTGAGGAAGATTTACAAGAGACC-TTGGTTGGGCCGAGGAAGTCCATATTCCACATAAGAGAGACCTAATCCCGTTCTGAATGTCGCCTCAGAATGGTTGTTTGGAAGA-----AGCTTCAGAAGAAAATTGCTTAAGACTCCCCACTCATCTTAGGCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACATTCCATTC-AC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17226306 221 - 121039945 -GGGAGTTGAGGAAGATTTACAAGAGACC-TTGGCTGGGCCGAGGAAGTCCATGTTCCACATAAGAGAGACCTAATCCCGTTCTGAATGTTGCCTCAGAATGGTTGTTTGGAATA-----AGCTTCAGTGGAAAATTGCTTAAGACTCCCCACTCATCTTAGGCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACATTCCATTA-AC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106700342 223 - 170124641 -GGGAGTCGAGGAAGATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAACCTAACCCCGTTCTGAAAGTCACCTCAGAATGGTTGTTTGGAAGA-----AGCTTCAGATGAAAATTGCTGAAGACTCCCAGCTCATCTTAGGCTGATCTAGCCTGCAGATCAGTGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACATTCCATTC-AC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108433808 223 - 171882078 -GGGAGTTGAGGAAGATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAACCTAACCCCGTTCTGAAAGTCACCTCAGAATGGTTGTTTGGAAGA-----AGCTTCAGATGAAAATTGCTGAAGACTCCCGGCTCATCTTAGGCTGATCTAGCCTGCAGATCAGTGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACATTCCATTC-AC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             118251 223 +    130206 -GGGAGTTGAGGAAGATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAACCTAACCCCGTTCTGAAAGTCGCCTCAGAATGGTTGTTTGGAAGA-----AGCTTCAGATGAAAATTGCTGAAGACTCCCGGCTCATCTTAGGCTGATCTAGCCTGCAGATCAGTGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACATTCCATTC-AT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21122980 223 -  24206276 -GGGAGTTGAGGAAGATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAACCTAACCCTGTTCTGAAAGTCGCCTCAGAATGGTTGTTTGGAAGA-----AGCTTCAGATGAAAATTGCTGAAGACTCCCGGCTCATCTTAGGCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACATTCCATTC-AC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22264001 220 + 158406734 -GGGATTTGA-GACAATTTGCAAGAGACC-TTGATTGGGCTGAGGAAGTCCATGTTCTACATAGGACAGACCTAATCCCGTTCTGAATGTCGCCTCAGAATGAGTGTGTGGAAGA-----AGCTTCAGGTGCAAACTGCTCAAGACTCCCCCCTCATCTTAGGCTGACCTAGCTTGCAGACCAATGAGG-AGAGTGCAAGTGACACAGCAAAGG-GAACATTCCATTC-AC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81368425 219 + 145441459 -GAGAGTTGAAGCAAATCTGCAAGAAAAC-TTAGTTGTGCCCTGGACATCCATATTCCATATTGGAGAAGCCTAAACCTATTTTGAATGCTGGCTCAT--TAACAGTTTGAAAAA-----GGTTGGGAAAGCAGA--GCAAAAGTCATTTGTATCATCCCAGGCTGCTCTACCCTATGGATCAATGGGGAAGTCTGCAAATGAAACAGCACAGG-GAACATTACATTCAAC
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54428084 220 +  91889043 agataaCTGAGTTAGATTTGCAGAAC--------TTAGGCCCAGGAAATCCATGTTCTACAGAAGAGGAGTACAACTCTGTTCTGAATGTCACCTCAGAAAGGCTGTTTGGAAGGACTGCAGTGGCAGAAGCAAAGTACCAAGGGCTCCCCTCTCATCCCAGGCTGATCCTGCGTGCCCACCAACAGGG-ACCTTGTAAGTAACACAGCATGGG-GAACATTCCATTC-AT
i canFam3.chr3              C 0 C 0

a score=28674.000000
s hg38.chr15_KI270850v1_alt    356428 8 +    430880 TGATTAGC
s panTro4.chr15              80138055 8 +  99548318 TGATTAGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10146483 8 +  10928107 TGATTAGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17226527 8 - 121039945 TGATTAGC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106700565 8 - 170124641 TGATTAGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108434031 8 - 171882078 TGATTAGC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             118474 8 +    130206 TGATTAGC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21123203 8 -  24206276 TGATTAGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22264221 8 + 158406734 TTATTAGC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81368644 8 + 145441459 TGGTCAAC
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54428304 0 +  91889043 C

a score=302563.000000
s hg38.chr15_KI270850v1_alt    356436 103 +    430880 AGTTAGGGTAGAAAAC-CAGAGTGT-Gggccaggcacggtggctc-acatctgtaatcccagcattttgggagtccgaggcgggtggatcacaaggtcaggagttc
s panTro4.chr15              80138063 103 +  99548318 AGTTAGGGTAGAAAAC-CAGAGTGT-Gggccaggcacggtggctc-acatctgtaatcccagcattttgggagcccgaggcgggtggatcacaaggtcaggagttc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10146491 103 +  10928107 AGTTAGGGCAGAAAAC-CAGAGTGT-Gggccaggcacggtggctc-acatctgtaatcccagcattttgggagtccgaggcgggtgaatcacaaggtcaggagttc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17226535 104 - 121039945 AGTTAGGGTAGAAAAC-CAGAGTGT-Gggctgggcacggtggctctccacttgtgatcccagcattttgggaggccgaggcgggtggatcacaaggtcaggagctc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106700573 104 - 170124641 AGTTAGGGTAGAAAAC-CAAAGCGTGGggccaggcacggtggctc-acacctgtaatcccagcattttgggaggccgaggtgggtggatcacaaggtcaggagttc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108434039 104 - 171882078 AGTTAGGGTAGAAAAC-CAAAGCGTGGggccaggcacggtggctc-acacctgtaatcccagcattttgggaggccgaggtgggtggatcacaaggtcaggagttc
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             118482 104 +    130206 AGTTAGGGTAGAAAAC-CAAAGcgtggggccaggcacggtggctc-acacctgtaatcccagcattttgggaggccgaggtgggtggatcacaaggtcaggagttc
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21123211 104 -  24206276 AGTTAGGGTAGAAAAC-CAGAGCATGGggccaggcatggtggctc-acacctgtaatctcagcattttgggaggccgaggcgggtggatcacaaggtcaggagttc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22264229 104 + 158406734 AGTTAGGGTAGAAAATGAAGAGTCT-Gggccaggcacagtagctc-atgcctgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcaggagtta
i calJac3.chr6              C 0 I 303
e mm10.chr7                  81368652   0 + 145441459 C
e canFam3.chr3               54428304   0 +  91889043 C

a score=6552.000000
s hg38.chr15_KI270850v1_alt    356539 2 +    430880 aa
s panTro4.chr15              80138166 2 +  99548318 aa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10146594 2 +  10928107 aa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17226639 2 - 121039945 aa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106700677 2 - 170124641 aa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108434143 2 - 171882078 aa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             118586 2 +    130206 aa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21123315 2 -  24206276 aa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22264636 2 + 158406734 aa
i calJac3.chr6              I 303 C 0
e mm10.chr7                  81368652 0 + 145441459 C
e canFam3.chr3               54428304 0 +  91889043 C

a score=488493.000000
s hg38.chr15_KI270850v1_alt    356541 214 +    430880 gacccacctggccaagatggtgaaaccccgtctctac--tt--------------t---------aaaaaa--aaaaattagctcggtgtggtggtgggcacctctaatcccagctactcaggaggctgaggcagaggattgcttgaacccgggaggcagaggttgcagtgagccaagatcgcaccactgtactccagcttggtcgacagagtgagactccatctcaaaaaaaaaaa----------------gaaa
s panTro4.chr15              80138168 218 +  99548318 gacccgcctggccaagatggcgaaaccccgtctctac--tt---------aaaaaa---------aaaaaa--aaaaattagctcggtgtggtggtgggcacctctaatcccagctactcaggaggctgaggcagaggattgcttgaacccgggaggcagcggttgcagtgagccaagattgcaccactgtactccagcttggtcgacagagtgagactccatctcaaaaaaaaaaa-----------------aaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10146596 236 +  10928107 gacccgcctggccaagatggtgaaaacccgtctctac--tt-------aaaaaaaa---------aaaaaa--aaaaattagctcggtgtaatggtgggcacctctaatcccagctactcaggaggctgaggcagaggattgcttgaacccgggaggcagaggttgcagtgagccaagatcacgccactgtactccagcttggttgacagagtgagactccatctaaaaaaaaaaaa-agaaaaaagaaaaaagaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17226641 244 - 121039945 gacccgcctggccaagatggtgaaaccccgtctctac--ttaaaaaaaaaaaaaaa---------aaaaaa--aaaaattagctgggcatggtggtgggcacctataatcccagctactcaggaggctgaggcagaggactgcttgaacccgggaggcagaggttgcagtgagctgagatcaggccactgtactctagcttgggcgacagagtgagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106700679 215 - 170124641 gacccgcctggccaagatggtgaaaccccatctctactttt---------aaaaaa---------aaaaaa--aaaaattagcttggcgtgggggggggcgcctacaatcccagcttctttgggggctgaggaagagaactgcttgaaccccggaggcagaggttgcagtgagctgagatcgtgccgccgcactccagcttgggcgacagagtgagactccatctc----------------------aaaaacaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108434145 214 - 171882078 gacccacctggccaagatggtgaaaccccatctctac--tt---------aaaaaa---------aaaaaa--aaaaattagctgggcgtggtggcgggcgcctacaatcccagcttcttgggaggctgaggaagagaattgcttgaacccaggaggcagaggttgcagtgagctgagatcgtgccactgcactccagcttgggcgacagagtgagactccatctc---------------------aaaaaaaaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             118588 234 +    130206 gacccacctggccaagatggtgaaaccccatctctac--tt---------aaaaaa--aataaataaataa--ataaattagctgggcgtgatggcgggcgcctacaatcccagcttcttgggaggctgaggaagagaattgcttgaacccaggaggcagaggttgcagtgagctgagagcgtgctactgcactccagcttgggcgacagagtgagactccatctcaaaaaaaaaaa--------aaagaaaagaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21123317 238 -  24206276 gacccacctggccaagatggtgaaaccccatctctac--tt---------aaaaaacaaacaaacaaacaaacaaaaattagctgggcatggtggcgggcgcctacaatcccagcttcttgggaggctgaggcagagaattgcttgaacccaggaggcagacgttgcagtgagctgagatcgtgccactgcactccagcttgggcgacagagtgagactccatctcaaaaaaaaaga--------aaagaaaagaaa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22264638 217 + 158406734 gaccaatctggccaagatggtgaaaccccgtctctac--tt------taaaaaaaa---------aaaaaa--aaaaattagctgggcatggtggcgggtgcctgtaatcccagctactcgggaggctgaggcagagaacagctcaaa-ccaggaggcagacattgcagtgagctgagatcacaccaccgcattccagccggggtgacagagcaagactccatctcaaaaacaaagg--------------------
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54428304  42 +  91889043 -----------------------------------------------------------------------------------------------------------AACCTGACTGGTCAGCAGGT--GGGCAGA----------AACCAGAGA---------------------AGATCG---------------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81368652   0 + 145441459 C

a score=1194869.000000
s hg38.chr15_KI270850v1_alt    356755 326 +    430880 agaaaagaaaaCCAGAGTG-TGAACAGGTTAGTCCTCAAGAGACTTCTAAAGGGGAGTGGCAAAAAACAGAC-ATG-TCCTCTGGC------AACCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTCCTTGTTT-CCAGGTCCCCCACAGTAGTCTCA----GTCACCTCACTCTTCTGCTGCATAATGCTGCACACAAAAGAGTCGCAAGGGGGAAGGC---AGGAAGACAAATCCAGCGGGTGGTACAGCTGATAAGCTGAGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTC
s panTro4.chr15              80138386 326 +  99548318 agaaaagaaaaCCAGAGTG-TGAACAGGTTAGTCCTCAAGAGACTTCTAAAGGGGAGTGGGAAAAAACAGAC-ATG-CCATCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTCCTTGTTT-CCAGGTCCCCCACAGTAGTCTCA----GTCACCTCACTCTTCTGCTGCATAATGCTGCACACAAAAGAGTCGCAAGGGGGAAGGC---AGGAAGACAAATCCAGTGGGTGGTACAGCTGATAAGCTGAGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10146832 327 +  10928107 AGAAAAGAAAACCAGAGTG-TGAACAGGTTAGTCCTCAAGGGACTTCTAAAGGGGAGTGGGAAAAAACAGAC-ATGCCCCTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACGAGGC----------------------A-TCATTAAG-------AGAGTCCTTGTTT-CCAGGTCCCCCAAAGTAGTCTCA----GTCACCTCACTCTTCTGCTGCATAATGCTGCACACAAAAGAGTCGCAAGGGGGAAGGC---AGGAAGACAAATCCAGTGGGTGGTACAGCTGATGAGCTGAGACTCAGGGATCAAGATGGGGCTTGAACTGTCTACCATATGCCCTCACCTTC
i ponAbe2.chr15_random      C 0 I 552
s nomLeu3.chr6               17226885 326 - 121039945 agaaaagaaaaCCAGAGTG-TGAACAGGTTAGTCCTCAAGGGACTTCTAAAGGGGAGTGGGAAAAAACAGAC-ATG-CCCTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCTTTAAG-------AGAGTCCTTCTTT-CCAGGTCCCCCAAAGTAGTCTCA----GTCACCTCACTCTTCTGCTGCATAATGCTGCACACAAAAGAGTCGCAAAGGGGAAGGC---AGGAAGACAAATCCAGCGGGTGGTACAGCTGATGAGCTGAGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106700894 326 - 170124641 agaaaagaaaaCCAGAGTG-TGAACAAGTTAGTCCTCAAGGGACTTCTAAAGGGGAGTGGGAGAAAACAGAC-ATG-CCTTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATTGTTT-CCAGGTCCCCCAAAGTAGTCTCA----GTCACCTCACTCTTCTGCTGAATAACGCTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAATCCAGCGGGTGGTACAGCTGATCAGCTGCGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCGCCTTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108434359 326 - 171882078 agaaaagaaaaCCAGAGTG-TGAACAAATTAGTCCTCAAGGGACTTCTAAAGGGGAGTGGGAGAAAACAGAC-ATG-CCTTCTGGC------ATCCTTAGACTACACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATTGTTT-CCAGGTCCCCCAAAGTAGTCTCA----GTCACCTCACTCTTCTGCTGAATAACGCTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAATCCAGCGGGTGGTACAGCTGATCAGCTGCGACTCAGGGATCAAGATGAGGCTGGAACTGTCTACCATATGCCCTCGCCTTC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             118822 326 +    130206 agaaaagaaaaccagagtg-TGAACAACTTAGTCCTCAAGGGACTTCTAAAGGGGAGTGGGAGAAAACAGAC-ATG-CCTTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATTGTTT-CCAGGTCCCCCAAAGTAGTCTCA----GTCACCTCACTCTTCTGCTGAATAACGCTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAATCCAGCGGGTGGTACAGCTGATGAGCTGCGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21123555 355 -  24206276 agaaaagaaaaCCAGAGTG-TGAACAAGTTAGTCCTCAAGGGACTTCTAAAGGGGAGTGGGAGAAAACAGAC-ATG-CCTTTTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGCATCATCTGTACAATGATCATTAA-TCATTAAACATAATTAGAGTAATTGTTT-CCAGGTCCCCCAAAGTAGTCTCA----GTCACCTCACTCTTCTGCTGAATAACGCTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAATCCAGCGGGTGGTACAGCTGATGAGCTGCAACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCGCCTTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22264855 326 + 158406734 ------aaaaaaCAGAGTT-TGAATGGGTCAGTGCTCAAGGGACTTCTAAAGACGAGTGGGGAAAAACAGACAATG-CTCTCTGACACTGATATCTTTAGAATGCACATATGGTCTG-CCACTGGGCTTCTGCACTAAAC----------------------A-TCATTAAG-------AGAGTCCTTGTTTCCCAGGTCTCCCAAAGTAGTCTCA----GTCACCTCACTCTTCTGCTGAATAATGCCGCACATATAAGAGTCACAAGGAAGAAGGC---AGGAAGACATATCCAGAGGGTGGTGCAGCTGATGAGCTAAAACTCAAGGACTGAGG-GGGGCTAGAACTGTCTACCATATGCTCTTACCTTC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81368652 327 + 145441459 AGGACAGAAACCAAAGGAGATGAATAGGTTAAT-CTCATGAGACTTCTAAAAGGGAATT----AGAATAGAC-ATG-TCCTCTGGC------ATCCTCAGGCTGAGTATCTCACTTGCCCACTGGGCTTCTGTACAAAGT---------------------GG-CCATTA---------AGAGTTCTTTCTT-CCAGGTCCCTCAAGGTAGATTTGAAATGTCACTTCACTCTCCTGCTGAGTAATGCTGCATACAGAAGAGTCATAAGGGGAAAGGCTTTAGAAAGACAAATCCAGTGGGTGGTTAAGCTGATGAACTGAGAC-CAAGGGTGGAAAGCGAGTGGGAAGTGTCTGTCAAGTGCCCTCATCTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428346 287 +  91889043 -----------------------ACAGGTTAATCTCTGAGGGACTTGTAAAGAG--------AAAACAAGAC-ATG-GTCTCTGGC------ATCCTTCCACTGAGCATCTGGTCTACCTGCTGGGCTTTGGTACAAGGC----------------------ATTCATTA---------GGAGTCCCTGTTT-CCAGGCCCCCCAAAGTAGATTCT----AGGGCACCCCCTTCCTGCTGAGTAATGCTGCATGC--CAGAGTC-CCTGGGGGGAGTC---AGGAAGACAG--CCATTAGCTGGTGCTGCTGATGAGCAGAGACTCAGG--TGGAGA-GGAGTCAGAACTGTCCACTGCACAACCTGGCCCTG
i canFam3.chr3              C 0 C 0

a score=582235.000000
s hg38.chr15_KI270850v1_alt    357081 209 +    430880 AGAGATCTCATCAAGGGAGCACATCACCTCTAGCTGAATAGCCCCTATAGTAGTATATGG-------TTACTTTAAGTTTTCTCACCCAATATGTTAGAGTTCTGCTAACAGGACCACAggtgtaacaggaagcatatgaattttgtaac--c--agagacctgggttagaattctgagccttccaggagttgtgtcactttgggcactttgt-aacctcc
s panTro4.chr15              80138712 209 +  99548318 AGAGATCTCATCAAGGGAGCACATCACCTCTAGCTGAATAGCCCCTAGAGTAGTATATGG-------TTACTTTAAGTTTTCTCACCCAATATGTTAGAGTTCTGCTAACAGGACCACAggtgtaacaggaagcatatgagttttgtaac--c--agagacctgggttagaattctgagtcttccaggagttgtgtcactttgggcactttgt-aacctcc
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17227211 209 - 121039945 AGAGATCTCATCAAGGGAGCACATCACCTCCAGCTGAATAGCCCCTAGAGTAGTATATGG-------TTACTTTAAGTTTTCTCACCCAATATGTTAGAGCTCTGCTAATAGGACCACAggtgtaacaggaagcatatgagttttgtaac--c--agagacctgggttagaattctgagtcttccagtagttgtgtcactttgggcactttgt-aacctcc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106701220 209 - 170124641 AGAGATCTCATCAAGGGCGCACATCACCTCTAGCTGAATAGCCCCTGTAGTAGTATATGG-------TTACTTTAAGTTTTCTCACCCAATATGTTAGGGTTCTGCTAATAGGACCACAggtgtaacaggaagcatatgagtttcgtaaa--c--agacacctgggttagaattctgagtctttcagtagttatgtcactttgggcactttgt-aacctct
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108434685 209 - 171882078 AGAGATCTCATCAAGGGCGCACATCACCTCTAGCTGAATAGCCCCTGTAGTAGTATATGG-------TTACTTTAAGTTTTCTCACCCAATATGTTAGGGTTCTGCTAATAGGACCACAggtgtaacaggaagcatatgagtttcgtaaa--c--agacacctgggttagaattctgagtctttcagtagttatgtcactttgggcactttgt-aacctct
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             119148 209 +    130206 AGAGATCTCATCAAGGGCGCACATCACCTCTAGCTGAATAGCCCCTGTAGTAGTATATGG-------TTACCTTAAGTTTTCTCACCCAATATGTTAGGGTTCTGCTAATAGGACCACAGGTGTAACAGGAAGCATATGAGTTTTGTAAA--C--AGACACCTGGGTTAGAATTCTGAGTCTTTCAGTAGTTAAGTCACTTTGGGCACTTTGT-AACCTCT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21123910 209 -  24206276 AGAGATCTCATCAAGGGCGCACATCACCTCTAGCTGAACAGCCCCTGTAGTAGTATATGG-------TTACTTTAAGTTTTCTCACCCAATATGTTAGGGTTCTGCTAATAGGACCACAggtgtaacaggaagcatatgagttttgtaaa--c--agagacctgggttagaattctgagtcttccagtagttatgtcactttgggcactttgt-aacctct
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22265181 205 + 158406734 ATAGATCTCATCAAGGGAGCACACCACCTCTACCCAAATAGCCTGT---GTAGTATATGG-------TGAC--TAAGTTTTCTCGCTCAATATGTTAGGGTTCTACTAACAGGACCACAggtgtaacaggaagcatatgagttttataac--c--agagacctgggttagaattctgagtcttccagtagttgtgtcactttgggcactttgtaaacctct
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81368979 190 + 145441459 AGAGATTTCATCAA-TGAACAGATCACCCCAGGCT-----TCTTACTTAGCTACATGAGG-------TTACCTTAAG---TCTGGTCTAACATATTAAGGTTCTGGTCACAGAA-AAGGGGTTTAATAGGAAGAATGGGAGGTTTAGAACAAA--AGACACCAGGTTTGGAATGCTTAGACAGACAATAG--ATGCCACTTTGTGTACTTT----------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428633 207 +  91889043 ACGGGTCTCAGCAAGGGAACTCACCATCTCTGACCGGACAGCCCC-AGGGCTGTGCGTGGAGGTATTTTAACAGAAGAGTTCTTGTCCAACATGTTAGAGTTCTGCTTACAGAAACACAgatgtaacagaaagcttaagagttttggaac--caaagagacctggg-tagaatcctga---------cagctttgtgatttctggtatttcac-aacctct
i canFam3.chr3              C 0 C 0
e ponAbe2.chr15_random       10147159 552 +  10928107 I

a score=564440.000000
s hg38.chr15_KI270850v1_alt    357290 153 +    430880 atgagcctatttcctcatctg---------------------------------------tacaaGCATTAAAATCATGTGATGTACTTAGCAC-AAAAATTAGTCGATAAA---TGGTGGTTATTAGTCACTCCATGCCCCATTCCAGGATACTGAGGACAGTTT-CCACAGCCCTTCTGTTCCACTACAGATCTT
s panTro4.chr15              80138921 153 +  99548318 atgagcctatttcctcatctg---------------------------------------tacaaGCATTAAAATCATGTGATGTACTTAGCAC-AAAAATTAGTCGATAAA---TGGTGGTTATTAGTCACTCCATGCCCCATTCCAGGATACTGAGGACAGTTT-CCACAGCCCTTCTGTTCCACTACGGATCTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10147711 153 +  10928107 ATGAGCCTATTTCTTCATCTG---------------------------------------TGCAAAGCATAAAATCATGTGATGTACTAGGCAC-AAAAAGTAGTCGATAAA---TGGTGGTTATTAGTCACTCCCTGCCCCATTCCGGGATACTGAGGACAGTTT-CCACAGCCCTTCTGTTCCATTACAGATCTT
i ponAbe2.chr15_random      I 552 C 0
s nomLeu3.chr6               17227420 153 - 121039945 atgaacctattttctcatctg---------------------------------------tGCAAGCATTAAAATCATGTGATGTACTTAGCAC-AAAAAATAGTCGATAAA---TGGTGGTTATTAGTCACTCCATGCCCCATTCCAGGATACTGAGGACAGTTT-CCACAGCCCTTCTGTTCCATTACAGATCTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106701429 153 - 170124641 gtgagcctatttgctcatctg---------------------------------------tGCAAGCATTAAAATCATGTGATGTACTTAGCAC-AAAAAGTAGTCGATAAA---TGGTGGTTATTAGTCACTCCATCCCCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCCTTCTGTTCCATTACAGATCTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108434894 154 - 171882078 gtgagcctatttgctcatctg---------------------------------------tGCAAGCATTAAAATCATGTGATGTACTTAGCAC-AAAAAGTAGTCGATAAA---TGGTGGTTATTAGTCACTCCATCCCCCATTCCAGGATACGGAGGACAGCTTCCCACAGCCCTTCTGTTCCATTACAGATCTT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             119357 154 +    130206 GTGAGCCTATTTGCTCATCTG---------------------------------------TGCAAGCATTAAAATCATGTGATGTACTTAGCACAAAAAAGTAGTCGATAAA---TGGTGGTTATTAGTCACTCCATCCCCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCCTTCTGTTCCATTACAGATCTT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21124119 153 -  24206276 gtgagcctatttgctcatctg---------------------------------------tGCAAGCATTAAAATCATGTGATGTACTTAGCAC-CAAAAGTAGTCGATAAA---TGGTGGTTATTAGTCACTCCATCCCCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCCTTCTGTTCCATTACAGATCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22265386 153 + 158406734 gtgagcctatttcctcatctg---------------------------------------tgcaagcattaaaataatgtgatatacttagcac-aaaaagtagttgATAAA---TGGTGGTTATTAGTCATTCTATCCCCCATTCTGGGATACTGAGGACAGCTT-CTACAGCCCTGCTGTTCCATTACAGATTTT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81369169 137 + 145441459 -TGCAAGTTTTTCCTCATCTG---------------------------------------TACAAGCACTAAAATCATGTGCTATGTTCAGCAT-TAAAAA-AATTAAGATA---TGTTGGCTGTATATCACTTCATTCCTCAACATGGGGT---------------ATATAGCCTTGACATACTATTAAAGGACCT
i mm10.chr7                 C 0 I 196
s canFam3.chr3               54428840 195 +  91889043 gtgagcctacctcctcacctttacaatagaagtaatgcccatacctgcttcacaggactctgcaagcattaaaatcacatgatggactttgcat-aggaagcagctggtagatagtggtggttattagtcactctatCCCCCATCCTGAGGTATTGAGGACAGCTT-TCAGAGTCCTGCTGTTCCATTACAGGACTT
i canFam3.chr3              C 0 C 0

a score=1418429.000000
s hg38.chr15_KI270850v1_alt    357443 439 +    430880 AAGACATTGC-AAGCAGGACAAGGGTAGCCCTGGACATGAGAAAGGGTAGCACTGGGGTAT--GAGAAAAACGCACTTATAACACTCATCTTGCCCCCAAAGTCTTCCTCCCCATCAAGGGATAGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCCCATGCAGGCCTTGCAGGTACAATTCTCAAAAACAGACTC-TATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGAGAATGGTATCCATGTACCAGCCTAAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAGCCCCTATCATAGCAG-----ATGC----AGCACTCGGTATAC-CTCCTCATTTGTtttcctttgatagccac
s panTro4.chr15              80139074 439 +  99548318 AAGACATTGC-AAGCAGGACAAGGGTAGCCCTGGACATGAGAAAGGGTAGCACTGGGGTAT--GAGAAAAACGCACTTATAACACTCATCTTGCCCCCAAAGTCTTCCTCCCCATCAAGGGGTGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCCCATGCAGGCCTTGCAGGTACAATTCTCAAAAACAGACTC-TATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAGCCCCTATCATAGCAG-----ATGC----AGCACTCGGTATAC-CTCCTCATTTGTTTTCCTTTGATAGCCAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10147864 439 +  10928107 AAGACATTGC-AAGCAGGACAAGCGTAGCCCTGGACATGAGAAAGGGTAGCACTGGGGTAT--AAGAAAAATGCACTTATAATACTCATCTTGCCCCAAAAGTCTTCCTCCCCATCAAGGGGTGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAGGACCACACAAAGTGTTACATC----CAAGCCCATGCAGGCCTTGCAGGTACAATTCTCAAAAACAGACTCTTATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGAGAATGCTATCCATGTACCAGCCTCAAGCTAAGAATCCAGTGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAA-GAAAGCCCCTATCATAGCAG-----ATGC----AGCACTCGGTATAC-CTCCTCATTTGTtttcctttgatagccat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17227573 448 - 121039945 AAGACATTGC-AAGCAGGACAAGGGTAGCCCTGGACATGAGAAAGGGCAGCACTAGGGTAT--GAGAAAAACGCACTTATAACACTCATCTTGCCCCAAAAGGCTTCCTCCCCATCAAGGGGTGGTGCCTCGGGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATCCAAGCAAGCCCATGTAGGCCTTGCAGGTACAATTCTCAAAAACAGACTC-TATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGGAGAAATACTCTGGCCCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAGcccctatcatagcagctatcatgc----agcactcggtatac-ttcctcatttgttttcctttgatagccat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106701582 434 - 170124641 AAGACATTGCTAAGCAGGACAAGGGTAACCCTGGACATGAGAAAGGGTAGCACTGGGGTAT--GAGAAAAATGCAC-TATAACACTAATCTTGCCCCACAAGGCTTTCTTTCCATCAAGGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGGTACAATTCTCAAAAACAGACTC-TATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGACAATGGTATCCACGTACTAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAACATGAAAGcccctatcatagtagctatcatgt----agcacttggtatac-ttcttcatttcttttccttttatagctat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108435048 434 - 171882078 AAGACATTGCTAAGCAGGACAAGGGTAACCCTGGACATGAGAAAGGGTAGCACTGGGGTAT--GAGAAAAACGCAC-TATAACACTAATCTTGCCCCACAAGGCTTTCTTTCCATCAAGGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGGTACAATTCTCAAAAACAGACTC-TATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGACAATGGTATCCACCTAATAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAACATGAAAGcccctatcatagtagctatcatgt----agcacttggtatac-ttcttcatttcttttccttttatagctat
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             119511 434 +    130206 AAGACATTGTTAAGCAGGACAAGGGTAACCCTGGACATGAGAAAGGGTAGCACTGGGGTAT--GAGAAAAACACAA-TATAACACTAATCTTGCCCCACAAGGCTTTCTTTCCATCAAGGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGGTACAATTCTCAAAAACAGACTC-TATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGAGAATGGTATCCACGTACTAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAACATGAAAGCCCCTATCATAGTAGCTATCATGT----AGCACTTGGTATAc-gtcttcatttcttttccttttatagcTAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21124272 433 -  24206276 AAGACATTGCTAAGCAGGACAAGGGTAACCCTGGACATGAGAAAGGGTAGCACTGGGGTAT--GAGAAAAACGCAC-TATAACACTCATCTTGCCCCACAAGGCTTTCTTTCCATCAAGGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGATACAATTCTCAAAAACAGACTC-TATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCA-AAGTACTCTGGCCCCTGGAGAATGGTATCCACCTACTAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAGcccctatcatagtagctatcatgt----agcacttggtatac-tttttcatttcttttccttttatagctat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22265539 436 + 158406734 AAGACATTGC-AAGTAGGACAAGGGCAGCCCTGGACAT--------GTACCACTGGGGTAT--GAGAAAAACGCACTTATAACACTCATCTAGCCCTGAAAGCCTTCCTCCCCAACAAGGGGTGGTGCCACACGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCTCATGCAGGCCTTGCAGGTACAATT-TCAAAAACAGAC---TATTCCAGGGTCTTCTTGCAGG-ACTATGAGGCCAAGGAAATCTAGACAGCAGAAGTATTCTGGCTCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTGAGAATCTGATGAAAGGTTGTTACAATGAAGA--------------------------------------------------CAATCCTTAGAGGAAAACATGGAAGcccctattatagcagctaccatatagcaagcacttggtatat-tttctcatttgttttcctttgacagc-at
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54429035 481 +  91889043 AAGACACTGC-CAGGAAGACAAAGGTAGTGCTGGA---------------CACTGGGGTCTCAGGGAAAAATCCACCTCTAACATTCATTTT-TCCCAAAGGGCTCCCCTCCCATCAAGAGGTGAGGCCACAAGGTAGGCATAGCCTAG-AGGGAGGGACTCCACGAAGTGCCATATC----CCAACCAACGCTGGCCTCGCAGGCACAAATCTCAAAACCAGATTC-CACTTCAGGGTCTTCATGCAGACCCTCTGAGGCCAATGGAACCCATGTAGCAGAAAGACCCAAGCCCCTTGAGAAAGGTCTCCAGGTACCAGCCTCATGCTGAGAACCCAATGAAAGATTGTCCCTATacacacacacacacacacacacacacacacacacacacacacaaaaacacacacCAAATCCTTAGGGGAGAAAATGGAAGCACCCATTGTAGCAACTATTATGT----TGCATTTGGTATACTTTTCTCACCTATTTTCCCTTCATAGTCAT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81369306 196 + 145441459 I

a score=3321355.000000
s hg38.chr15_KI270850v1_alt    357882 846 +    430880 ggagattcttaaaggtaacaattttatcttaatcaatgttgtactt---ccagtgct--------------gcacacaacg---aatgctcg-------acgtttgccagatgaatTTAGC-------------CAACAGCCCTACTATCTCCAACCTTGCTC------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAG----CTGCCTTGGGCAATATATCACCAAGCAGAGCTCAAGGAATAAGCT-TGCATCTTGGTCTCTACACAGAGACAACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAAAATGCCCAGAGCTGTTGAAA-GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCCAGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAA-GGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAA-CCTGCCTACACAGCCAGATCATACTGCTGGGGCAACTCTGGTTCTGGTCCTTATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCGACAAAATCATGTAATATTTATCACTAAAGT-GCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGAGACAAACAGCTACA----AGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATGACTAGATC----------------------------------CAAGCTACTTTTA-ATAG
s panTro4.chr15              80139513 847 +  99548318 Ggagattcttaaaggtaacaattttatcttaatcaatgttgtactt---ccagtgct--------------gcacacaacg---aatgctcg-------atgtttgccagatgaatTTAGC-------------CAACAGCCCTACTATCTCCAACCTTGCTC------------GTTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAG----CTGCCTTGGGCAATATATCACCAAACAGAGCTCAAGGAATAAGCT-TGCATCTTGGTCTCTACACAGAGACAACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAAAATGCCCAGAGCTGTTGAAA-GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCCAGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAAGGGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAA-CCTGCCTACACAGCCAGATCATACTGCTGGGGCAACTCTGGTTCTGGTCCTTATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAATATTTATCACTAAAGT-GCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGAGACAAACAGCTACA----AGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATGACTAGATC----------------------------------CAAGCTACTTTTA-ATAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10148303 851 +  10928107 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---ccagtgct--------------gcacacaatg---aatgctcg-------atgtttgccaaatgaatTTAGC-------------CAACAGCCCTACTATCTGCAACCTTGTTC------------ATTGCTTAAGAGTGGTGGAAGATGGTCAGACGTGATGCCATAG----CTGCCTTGGGCAATATATCACCAAGCAGAGCTCAAGGAATAAGCT-TGCGTCTTGGTCTCTACACAGAGACAACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAAAATGCCCAGAGCTGTTGAAA-GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCCAGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAA-GGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAA-CCTGCCTACACAGCCAGATCATACTGCTGGGGTAACTCTGGTTCTGGTCCTTATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAATATTTATCACTAAAGTGGCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGAGACAAACAGCTACAATGTAGCACAGGCCTTTCAGGTGGTGGAGAAGCCGTGGATATTATGACTAGATC----------------------------------CAAGCTACTTTTA-ATAG
i ponAbe2.chr15_random      C 0 M 196
s nomLeu3.chr6               17228021 845 - 121039945 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---ccagtgct--------------gcacacaacg---aatgctcg-------atgtttgccaaatgaatTTAGC-------------CAACAGCCCTACTATCTCCAACCTTGCTC------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCACAG----CTGCCTTGGGCAATATATCACCAAGCAGAGCTCAAGGAATAAGCT-TGCATCTTGGTCTCTACAAAGAGACAACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAAAATGCCCAGAACTGTTGAAA-GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGACAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGACTGCATCCTACTCCAGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAA-GGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAA-CCTGCCTACACAGCCAGATCATACTGCTGGGGCAACTCTGGTTCTGGTCCTTATGAATTCTGAGGCT-CAGGCTGCAGT-CCTCCCTGGTCCACAAAATCATGTAATATTTGTCACTAAAGT-GCTTGGGATGGAAAGTGGAAACGAAAAACCATTTCTATTTCACAGACAAACAGCTACA----AGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATGACTAGATC----------------------------------CAAGCTACTTTTA-ATAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106702016 839 - 170124641 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---ccagtgct--------------gcacacaacg---aatgctca-------atgtttgccaaatgaatTTAGC-------------CAACAGCCCTACTATCTCCAACCTTGCTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAG----CTGCCTTGGGCAATGTATCACCAAGCAGAGCTCAAGGAATAAGCC-TGCATCTTTGTCTTTACAGAGAGACAACAGTGTAACAGGGTATCTGCAAGGATAACTTCGAAAATGCCCAGAGCTGTTGGAA-TCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCCAGGAGGTAGTAACCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAA-GGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAA-CCTGCCTACACAGCCAGATCATACCGCTGGGGCAACTCTGGTTCTGGACCTTATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAATATTTATCACTAAAGT-GTTTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACA----AGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATAACTAGATC----------------------------------CAAGCTACTTTTA-ATAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108435482 839 - 171882078 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---ccagtgct--------------gcacacaaca---aatgctca-------atgtttgccaaatgaatTTAGC-------------CAACAGCCCTACTATCTCCAACCTTGCTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAG----CTGCCTTGGGCAATGTATCACCAAGCAGAGCTCAAGGAATAAGCC-TGCATCTTTGTCTTTACAGAGAGACAACAGTGTAACAGGGTATCTGCAAGGATAACTTCGAAAATGCCCAGAGCTATTGGAA-TCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCCAGGAGGTAGTAACCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAA-GGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAA-CCTGCCTACACAGCCAGATCATACCGCTGGGGCAACTCTGGTTCTGGACCTTATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAATATTTATCACTAAAGT-GTTTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACA----AGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATAACTAGATC----------------------------------CAAGCTACTTTTA-ATAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             119945 842 +    130206 GGAGATTCTTAAAGGTAACAATTTTATCTTATTCAATGTTGTACTTCCACCAGTGCT--------------GCACACAACA---AATGCTCA-------ATGTTTGCCAAATGAATTTAGC-------------CAACAGCCCTACTATCTCCAACCTTGCTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAG----CTGCCTTGGGCAATGTATCACCAAGCAGAGCTCAAGGAATAAGCT-TGCATCTTTGTCTTTACAGAGAGACAACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAAAATGCCCAGAGCTGTTGGAA-GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTAGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCCAGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAA-GGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAA-CCTGCCTACACAGCCAGATCATACCGCTGGGGCAACTCTGGTTCTGGACCTTATGAattctgaggct-gaggctgcagtccCTCCCTGGTCCACAAAATCATGTAATATTTATCACTAAAGT-GTTTGGCATggaaagtggaaaagaaaaaccatttatATTTCAGAGACAAACAGCTACA----AGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATAACTAGATC----------------------------------CAAGCTACTTTTA-ATAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21124705 839 -  24206276 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---ccagtgct--------------gcacacaaca---aatgccca-------atgtttgccaaacgaatTTAGC-------------CAACAGCCCTACTATCTCCAACCTTGCTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAG----CTGCCTTGGGCAATGTATCACCAAGCAGAGCTCAAGGAATAAGCT-TGCATCTTTGTCTTTACAGAGAGACAACAGTGTAACAGGGTATCTGCAAGGATAACTCCAAAAATGCCCAGAGCTGTTGGAA-GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCCAGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAA-GGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAA-CCTGCCTACACAGCCAGATCATACCGCTGGGGCAACTCTGGTTCTGGACCTTATGAATTCTGAGGCT-CAGGCTGCAGTACCTCCCTGGTCCACAAAATCATGTAATATTTATCACTAAAGT-GTTTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACA----AGCACAGGCCTTTCAGGTGGTGGAGAAGATGTGGATATTATAACTAGATC----------------------------------CAAGCTACTTTTA-ATAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22265975 834 + 158406734 ggagattcttaaaggtaataattttatcttattcattgttttactt---ccagtgct--------------gcacacaaca---aatgctca-------atgtttcctgaaagaatTTGGC-------------CAAAAGCCCTACTATCTCCAACCTTGCTG------------ATAACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAGCTGCCTGCCTTGGGCCATATATCACCAAGCAGAGCTCAAGGAATAAGCT-TGCATCTTGGTCTCTACACAGAGGCAACAGTGTAACAGGATGTCGGCAACGATAACTACCCAAATGCCCAAAGCTGTTGAAA-GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATATTCCCGCAATGCTGGTGAGGGTGCATGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACCCCAGGAGGCGGAACCTTTGTGTGGGTTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGTGATAGCTGTCACCACAGCTCC-AAAA-CCAAA-GGCAACACGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAGACATACCC---------------ACAGAGCCAGATCATGCTGCTGGGGCAACTCCGGTTCTGGTCCTTATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAGTATTTATCACTAAAGT-GCTTGGCATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGACACAAACAGCTACA----AGCACAGGTCTGTCAGGTGATAG-GAAGCTGTGGATATTATGACTAGATC----------------------------------CAAGCTAC-TTTA-ATAG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81369502 878 + 145441459 GGagcttcttaatgacagtgatttcatcctattcactggcatacct---gcagtacccaac--agtttctggcacatagtgtgtaatgcccgagtaaatattATAGTCAAA-ATCTTCAGT-------------CAAGAGCCCTAT--GCTCCAACCTTGCCTAATGCACTGTCAAATACTTAAAAGTGGTAGAAGACAGTCAGGTATGGGGCTACAA----CTTACTGGGG--AAGTATCATTAACCAGAGTCTAAGCAATAA-----------CAGGCTCCACACAGAGACAAGAGGATACCAGGCTGCTTGCAAGTACAACTCACAGGTTTTCTGAAGCTATTGAACTATCTCCACCCTTCCTCAAGAAACTGA-CTGAAATTGGTTTTCAGATGGAAAG-CAGTGTGGGCACTGGAATGTGGGCTGTTTGTTCCCGCATTACTGGCAAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTCCATCCTACTCTAGGAGACAGCACCCTCATATGGGCTTTCCACGAAGGCACAAAGCTTAGGAAAAGGAGAA----GGCTACCACCACAGCTCCTAAAG-GCAAA-CACAGAATGGAGATGTGGAATGAGTATGTTTTAAGCCC-CAGAAAGCAAGAGGTGCTCATGCTAA-CCT--------AGTCAGATCACTGCACTGGGGCCAGTC----TCAAGTCTTTATACATTCTGAAGTT-CAGACTGCAGCCCTTCCCTAATCCACAAAATCATGTATTATTTATTACTAAA-T-GCTTGGTATGGAAGGTAAAGAAAGACACCCCCTTTT------CAGACTAATAGCTCTA----AGATCTGGTTCTTCAGAGGATGGGAACGCTAATACAATCATGCCTAGACCTGGCTTTTCCTTTTATTTtctttccttcctgagacaaggtcctgctacattg
i mm10.chr7                 I 196 I 12
s canFam3.chr3               54429516 852 +  91889043 -GGGAtt---------------------ttattcaccaatgtacct---ctagtgtctaacctagtatttggctcacagcc---aggattca-------atgcttgttggataaatTTAGCCAGGATTTTCAGTCAAGGGCCCTGCTATCTCCAACCTTGCCCCCAACATTGCTAAATACTTAACAGTGGCAGGAGATGGTCAAATGTGAAGCCATAG----CTGTGTGGGGCAATATATCACCACGGAGAGCCCAAGGAATGGGCTGTGC-----------TCCACAGAGACAGCCCAGTACCATGCTGTATGCAAGGATAACTCCCAGACTGTCCAGAGCTATTGAAATACCTCCTCCCTCCCTGAATAAAGTGAGCT--AGTTGATCTTCAGATGGGAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGCAAGGGTGCCCAATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTACATCCTACTCCAGTAGGCAGTACCCTCATGTGGGCTTTCCGAGAAGGCCCAGAGCTCAGAGAAAGAAGAGCGGTGGCCATCACCAAAGCTTC-AAAATTCAAG-AACATCACGAGTGTTAGGGATGCGTGTGTCCTTAAGCCTCAGAAAGAAAGACACAGTCACGCCAGCCCTGCC--CATAGCCAGATCATACCACTGGGGCAACCC----TCTGGTCCCTATGAATGCTAGGGCCACATACTGAAGTCCCTCCCTGATCCACAAAATCATGTAATATTTATCAATAAAGT-GCCTGAGATGAAAGGTCAAGAAATAAATCCATCCCTATTCTGGAGACAAGTAGCTGTA----AGCACAGGACATTCAGGTAGTATGGAAGCCAGAGAAATTACGGCCAGGTC----------------------------------CATCCTATTTTTTTACAG
i canFam3.chr3              C 0 C 0

a score=665501.000000
s hg38.chr15_KI270850v1_alt    358728 238 +    430880 CTCAATTTCATAG--------------------TAACTTTCAGACCAAGCTCTCCAAGCCCCCAGTGGGGCACACCTGCATTTCTATGGGCCCAATGTTATAATGTATTTCAGAAA-GAGCATTGTAGCTTAGAGA-ATGAGAGCCAAAGAAGGGCTATACTTCAACCTGATGCCAATGAAAGACAGTGCCT--TGGTCAAACACTGATCACCCACAGACAGGTGCCCATCTCCTGTGTGAGTTCTTCTATCTTTTGCTCAG
s panTro4.chr15              80140360 238 +  99548318 CTGAATTTCATAG--------------------TAACTTTCAGACCAAGCTCTCCAAGCCCCCAGTGGGGCACACCTGCATTTCTATGGGCCCAATGTTATAATGTATTTCAGAAA-GAGCATTGCAGCTTAGAGA-ATGAGAGCCAAAGAAGGGCTATACTTCAACCTGATGCCAATGAAAGACAGTGCCT--TGGTCAAACACTGATCACCCACAGACAGGTGCCCATCTCCTGTGTGGGTTATTCTATCTTTTGCTCAG
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17228866 238 - 121039945 CTGAATTTCATAG--------------------CAACTTTCAGACCAAGCTCTCCAAGCCCCCAGTGGGACACACCTGCATTTCTATGGGCCCAATGCTATAATGTATTTCAGAAA-GAGCATTGTAGCTTAGAGA-ACCAGAGCCAAAGAAGGGCTATACTTCAACCTGATGCCAGTGAAAGACAGTGCCT--TGGTCAAACACTGATCGCCCACAGACAGGTGCCCATCTCCTCTGTGAGCTCTTCTATCTTTTGCTCAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106702855 240 - 170124641 CTGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACACCTGCATTCCTATGGGCCCAATGCTATAATGTATTTCAGAAA-GAGCACTGCAGCTTAGAGA-ACCAGAGCCAAAGAAGGGCTATACTTCAACCTGATGCCAGTGAAAGACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108436321 240 - 171882078 CTGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACACCTGCATTCCTATGGGCCCAATGCTATAATGTATTTCAGAAA-GAGCACTGCAGCTTAGAGA-ACCAGAGCCAAAGAAGGGCTATACTTCAACCTGATGCCAGTGAAAGACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             120787 240 +    130206 CTGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACATCTGCATTCCTATGGGCCCAATGCTATAATGTATTTCAGAAA-GAGCATTGCAGCTTAGAGA-ACCAGAGCCAAAGAAGGGCTATACTTCAACCTGATGCCAGTGAAAGACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTATGTGAGCTCTTCTATCTTTTGCTCAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21125544 240 -  24206276 CTGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACACCTGCATTTCTATGGGCCCAATGCTATAATGTATTTCAGAAA-GAGCATTGCAGCTTAGAGA-ACCAGAGCCAAAGAAGGGCTATACTTCAACCTGATGCCAGTGAAAGACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22266809 186 + 158406734 CTGAATTTCACAG--------------------CAACTTTCAAACCAAGCT----AAGCCC------------------------------------------------TCAGAAA-GAGCACTGTAGCTTAGAGA-ATCAGAGCAAAAGAAGGGCTATACTTCAACCTGATACCAGTGAAAGACAGTGCCT--TGGTCAAACATTGATCACCTATAAACAGGTGCCCCTCGCCTATGTGAGCTCTTCTATCTTTTGCTCCA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81370392 231 + 145441459 atgaattcctgagcAGACAATTACCTTACTGTACAGCTGTTAGAACAGGCTTTCTAAGCTTCAAGATGGACACATCTAAATTTCCATGGGCCTAGT-------------TCAGAAGCTAACTCTGTAGCTAAGACA-AACAGGAGGAAAGAAGGGCCACACCCCAA-TTGATGCCAGC------CAGCAC----AAATCAGA-ACTGAT-GACCACACACAGGTGCTCATCTCCTGTGTGAGTGCT----TCTTTTGCTCAA
i mm10.chr7                 I 12 C 0
s canFam3.chr3               54430368 231 +  91889043 CCCAATTTCACAG--------------------TAGCTTTCAGGCCATGCTTTCCAAGGCCCAAATTGGGTCCTCCTGCAATTTTATG-------TGCTGTAATACTTTTCAGAAG-GACCCCTGTAGTTAAGACAGACCAGAGACAAGGCAGGGCCACGCCCCAAGCTGGTATCAGTGAAAGACGGTGCCT--TAGTCAAACATGGATCA-CCACAGACAGATGCCCACCTCCTCTGTGAGCTCTTCTGTCTTCTGGTCAG
i canFam3.chr3              C 0 C 0
e ponAbe2.chr15_random       10149154 196 +  10928107 M

a score=68004.000000
s hg38.chr15_KI270850v1_alt    358966 116 +    430880 ATACGGTGGAAGTGAGGACAGGG--GAGGCTGGCTTCATAGGCCCCCAAGGTTGGCGTCAAG--AACACACAAAACAAAGTACCGT--------------GGTCTCC-AGGCATAGAATACCAAACAGTG--ATACC
s panTro4.chr15              80140598 116 +  99548318 ATACGGTGGAAGTGAGGCCAGGG--GAGGCTGGCTTCATAGGCCCCCAAGGTTGGCGTCAAG--AACACACAAAACAAAGTACCGT--------------GGTCTCC-AGGCATAGAATACCAAACAGTG--ACACC
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17229104 118 - 121039945 ATACAGTGGAAGTGAGGACAGGG--GAGGCTGGCTTCATAGGCCACCAAGGTTGGCTTCAAG--AATACACAAAACAAAGTACCGT--------------GGTCTCC-AGGCATAGAATACCAAACAGTGGTATGCC
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22266995 126 + 158406734 ATACAGTAGAAGAGAGGACAGGA--GAGGCTGGCTTCATAGGCCACTAAGGTTGGCTTCAAG--AATACACA----AAAGTATCGTGCTGTCCAAGCCAAGGTCTCC-AGGCATAGGATACCAAACAGTG--ACACC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81370623  97 + 145441459 ATCCTGTAGAAGTAAATAAAAGGACAAGGCTTGTTTCA---------------------AAG--AATACATAAAAGGAAGTACTGT--------------GGCCTCCAAAGCAAATGACATTGAATAGTG--ACAC-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54430599 115 +  91889043 ATACAGTAGGAGTGAGAGC------AAGGTCAGCTTCATAGGCCAATTGGGTCGACTTCAGAGTACCACATAAAAGCAGAGACCACGGCCTCGTAGCCATGATCTCC-AGGCACAGGATACC---------------
i canFam3.chr3              C 0 C 0
e chlSab2.chr29              21125784   0 -  24206276 C
e papAnu2.JH685126             121027   0 +    130206 C
e macFas5.chr7              108436561   0 - 171882078 C
e rheMac3.chr7              106703095   0 - 170124641 C
e ponAbe2.chr15_random       10149154 196 +  10928107 M

a score=79809.000000
s hg38.chr15_KI270850v1_alt    359082 25 +    430880 ATACTTCCTTGCCCAGGGGAACAGG
s panTro4.chr15              80140714 25 +  99548318 ATACTTCCTTGCCCAGGGGAACAGG
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17229222 25 - 121039945 ATACTTCCTCGCCCAGGGGAACAGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106703095 25 - 170124641 ATACTTGCTTACCCAGGGGAACAGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108436561 25 - 171882078 ATACTTGCTTACCCAGGGGAACAGG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             121027 25 +    130206 ATACTTGCTTGCCCAGGGGAACAGG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21125784 25 -  24206276 ATACTTCCTTGCCCAGGGGAACAGG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22267121 25 + 158406734 ATACTCTCCTGCCTAGGGGAACAGG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81370720 22 + 145441459 --ATTTCCTGGCCTA-GAGAACAGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54430714 25 +  91889043 ACACTTACTTGCCCAGAGGAACAGG
i canFam3.chr3              C 0 C 0
e ponAbe2.chr15_random       10149154 196 +  10928107 M

a score=9444847.000000
s hg38.chr15_KI270850v1_alt    359107 2236 +    430880 GTAGTTGCTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGCCAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGTA-AA-GCTC-TCCCCATCCACATCC-----------------ACATAAA--ACAATTTCAATACCCCTCTCCTAAATGGGGTTTTACCAAAACAACTGGGCATTAAAATGCCTAACAGACA---CAACGGGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCAGGGAGGGA-AGGGAAGGACAGCAGACTTGGTGTTTCCCACTGTCAGTACCAACAGCGAATGGCTGTACCACCCCCTCCCCCCC--------GCCCCTTACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATAC-CTCTT-TATT-----ATAATTTACATAAAGCAAAATATGTAG--CTTGTAAGTATA-CCTGTAGTGTT---TAAGTTCACATTTCTTCCTGAATACTCCAAGACTTGTATTTAGGCAACCCTCCTCCTTGTACCACAAGAGGGAAATAAACAGGTAAC-AGAAGGTATAAGCAGAAGCAATTTAAGGGGGGGCTGCCAAGAAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG---AAAAAAAAAAAAGATTCTATAGCTGGGAGTTACCCCACC---CCACTCACCCTGCCTACCCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAAATATCTCAGTGCATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTT--CATATAACTCCCTGGTTTTT----AAAACCACTGAGTA-AT----TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-CAAGGCCACCACGCCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAGAGCCATGCCTGCCTTTACGTGGAG---CCATCTGTCCTGCCACACTCACAGCTTGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGTGTGTATGGTGGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTCGTTCACCACCCC---CATGCATCCCCTTACCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGTTTTGGAAAGGAGCACAGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGA-CGCTGGGGCAAGAGCAGTTGCCATACAGGCCCCCTCCCCTCACA----------CACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCAGGG-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGTTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCACGCACGACTGAAGTCCTCTCCGCCGACAGCAGAGCCAAAGCA--GCCGACTGCCTGCTCGTGTGGctctgccctcctgcccctccctttccctccccctgctctccacccccAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAAATC-----------------------TGTGCTCCAAG
s panTro4.chr15              80140739 2241 +  99548318 GTAGTTGCTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGCCAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGTA-AA-GCTC-TCCCCATCCACATCC-----------------ACATAAAACACAATTTCAATACCCCTCTCCTAAATGGGGTTTTACCAAAACAACTGGGCATTAAAATGCCTAACAGACA---CAACGGGCCCAGGCTCTGCAAAGCATTCT---------------AAAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCAGGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGTACCAACAGCGAATGGCTGTACCACCCCCTCCCCCCC--------GCCCCTTACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATAC-CTCTT-TATT-----ATAATTTACATAAAGCAAAATATGTAG--CTTGTAAGTATA-CCTGTAGTGTT---TAAGTTCACATTTCTTCCTGAATACTCCAAGACTTGTATTTGGGCAACCCTCCTCCTTGTACCACAAGAGGGAAATAAACAGGTAAC-AGAAGGTATAAGCAGAAGCAATTTAAGGGGGGGCTGCCAAGAAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG-AAAAAAAAAAAAAAGATTCTCTAGCTGGGAGTTACCCCACC---CCACTCACCCTGCCTACCCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAAATATCTCAGTGCATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTT--CATATAACTCCCTGGTTTTT----AAAACCACTGAATA-AT----TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-CAAGGCCACCACACCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAGAGCCATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTTGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGTGTGTATGGTGGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTCGTTCACCACCCC---CATGCATCCCCTTACCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAGGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGTTTTGGACAGGAGCACAGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGA-CGCTGGAGCAAGAGCAGTTGCCATACAGGCCCCCTCCCCTCACA----------CACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCAGGG-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTTACGCACGACTGAAGTCCTCTCCGCCGACAGCAGAGCCAAAGCA--GCCAACTGCCTGCTCGTGTGGCTCTGCCCTCCTGCCCCTCCCTTTCCCTCCCCCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAAAAGGACAGTCCTGCTAGCAAAAATC-----------------------TGTGCTCCAAG
i panTro4.chr15             C 0 M 904
s ponAbe2.chr15_random       10149350 2228 +  10928107 GTAGTTGCTGACTT-------------TTCTGGGAAAACCTGAGTCAGC-----AGAAGGCCAGT-ACGATAA-AAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGCA-AATGCTC-TCCCCATCCACATCC-----------------ACATAAA--ACAATTTCAATACCCCTCTCCTAAATGGGGTTTTACCAAAACAACTGGGCATTAAAATGCCTAACAGACA---CAACGGGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCAGGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCACTACCAACAGCGAATGGCTGTACCACCCCCTCCCCCCCACCCCACTGCCCCTTACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATAC-CTCTT-TATT-----ATAATTTATATAAAGCAAAATATGTAG--GTTGTAAGTATA-CCGGTAGTGTT---TAAGTTCACATTTCTTCCTGAATATTCCAAGACTTGTATTTGGGCAACCCTCCTCCTTATACCACAAGAGGGAAATGAACAGGTAAC-AGAAGGTATGAGCAGAAGCAATTTAAGGGGGGGCTGCCAAGAAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGGGAAAAAAAAAAAAAAGATTCTATAGCTGGGAGTTACCCCACC---CCACTCACCCTGCCTACCCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAAATATCTCAGTGCATTATCCAGCCTCATCTGAGGGTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTT--CATATAACTCCCTGGTTTTT----AAAACCACTGAGTA-AT----TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCATGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCACCA--CCTTTGGGACCCTCCTCAGGGCCACT-CAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGATACGTGTAAGAGCCATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGTGTGTATGGTGGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTCGTTCACCACCCC---CATGCATCCCCTTACCCCAGCCAGCT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCACAGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGGCCGCTGGGACAAGGA---------------------------ACANNNNNNNNNNCACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCAGGA-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCACGCACGACTGAAGTCCTCTCTGCCGACAGCAGAGCCAAAGCA--GCCGACTGCCTGCTCGTGTGGCTCTGCCCTCCTGCCCCTCCCTTTCCCTCCCCCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTTCTGCTAGCAAAAATC-----------------------TGTGCTCCAAG
i ponAbe2.chr15_random      M 196 C 0
s nomLeu3.chr6               17229247 2242 - 121039945 GTAGTTGCTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGCCAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGTA-AA-GCTC-TCCCCATCCACATCC-----------------ACATAAA--ACAATTTCAATACCCCTCTCCTAAATGGGGTTTTACCAGAACAACTGGGCATTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAACGCATTCT----------------AAAAAAAGACCTGCGCCAAGCAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCAGGGAGGGA-AGGGAAGGACAGAAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGTGAATGGCTGTACTACCCCCTCCCCCGCGCCCTACTGCCCCTTACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATAC-CTCTT-TATT-----ATAATTTACAGAAAGCAAAATATGTAG--GTTGTAAGTATACCCGGTAGTGTT---TAAGTTCACATTTCTTCCTGAATACTCCAAGACTTGTATTTGGGCAACTCTCCTCCTTGTACCACAAGAGGGAAATAAACAGGTAAC-AGAAGGCCTGAGCAGAAGCAATTTAAGGGGGGTCTGCCAAGAAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG---AAAAAAAAAAAAGATTCTATAGCTGAGAGTTACCCCACC---CCACTCACCCTGCCTACCCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAAATATCCCAGTGCATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTT--CATATAACTCCCTGGTTTTT----AAAACCACTGAGTA-AT----TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCT-CTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAGAGCCATGCCTGCCTTTATGCGGAG---CCATCTGTCCTGCCACACTCACAGCTACCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGTGTGTATGGTGGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTCGTTCACCACCCC---CATGCATCCCCTTACCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCACAGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAAAAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGG-CGCTGGGGCAAGAGCAGTTGCCATACAGGCCCCCTCCCCTCACA----------CACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATCGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCGGGG-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCTGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCACGCACGACTGAAGTCCTCTCCGCTGACAGCAGAGCCAAAGCA--GCCGACTGCCTGCTCGTGTGGCTCTGCCCTCCTGCCCCTCCCTTTCCCTCCCCCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAAATC-----------------------TGTGCTCCAAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106703120 2240 - 170124641 GCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGT-----AGAAGGCCAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTA-AA-GCTC-TCCCCATCCACAACC-----------------ACATAAA--ACAATTTCAATACCCCTCCCCTAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCACCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCAGGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTGCACCACCCCCCTTCCCCA--CCCACTGCCCCTTACCACCTTTCCATTTTCCTAAAGTATCTGCTGCCAATAC-CTCTT-TATT-----ATAATTTACATAAAGCAAAATACGTAG--GTTGTAAGTATA-CCTGTAGTGTT---TAAGTTCACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGCAACCCTCCTCCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTAAGGGGGGGCTGCCAAGAAGTCCCTTTCGTTTGACCCCATTGAATCC-TATCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG----AAAAAAAAAAAGGTTCTAGAGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTACACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAAATATCCCAGCGCATTATCCAGCCTCATCCGAGATTAAAATCCGTCCCTTGCCA-TGATTCAGAGACCACTCACTCTT--CATATAACTCCCTGGTTTTT----AAAACCACTGAGTA-AT----TTTGGTCATCCAGTAATCAACCCCTTAACTTCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAACGCCATCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGTGTGTATGGTAGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTCATTCACCACCCC---CATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCACAGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGG-CGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACA----------CACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCAGGG-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCCAAAGCA--GCCGAATGCCTGCTTGTGTGGCTCTGCCCTCCTGCCCCTCCCTTTCCCTCCCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAAATC-----------------------TGTGCTCCAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108436586 2239 - 171882078 GCAGTTACTGACCT-------------TTCTGGAAAATCCCGAGTCAGT-----AGAAGGCCAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTA-AA-GCTC-TCCCCATCCACAACC-----------------ACATAAA--ACAATTTCAATACCCCTCCCCTAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCACCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCAGGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTGCACCACCCCCCTTCCCCA--CCCACTGCCCCTTACCACCTTTCCATTTTCCTAAAGTATCTGCTGCCAATAC-CTCTT-TATT-----ATAATTTACATAAAGCAAAATACGTAG--GTTGTAAGTATA-CCTGTAGTGTT---TAAGTTCACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGCAACCCTCCTCCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTAAGGGGGGGCTGCCAAGAAGTCCCTTTCGTTTGACCCCATTGAATCC-TATCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG-----AAAAAAAAAAGGTTCTAGAGCTGGGAGTTACCCCACC---CCACTTACCCTGCCTACACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAAATATCCCAGCGCATTATCCAGCCTCATCCGAGATTAAAATCCGTCCCTTGCCA-TGATTCAGAGACCACTCACTCTT--CATATAACTCCCTGGTTTTT----AAAACCACTGAGTA-AT----TTTGGTCATCCAGTAATCAACCCCTTAACTTCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAACGCCATCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGAAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGTGTGTATGGTAGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTCATTCACCACCCC---CATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCACAGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGG-CGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACA----------CACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCAGGG-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCCAAAGCA--GCCGAATGCCTGCTTGTGTGGCTCTGCCCTCCTGCCCCTCCCTTTCCCTCCCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAAATC-----------------------TGTGCTCCAAG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             121052 2239 +    130206 GCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGT-----AGAAGGCCAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTA-AA-GCTC-TCCCCATCCACAACC-----------------ACATAAA--ACAATTTCAATACCCCTCCCCTAAATGGGGTTTTACCAAAACAACTGTGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------aaaaaaaGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGaccagggaggga-agggaaggacagCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTGCACCACCCCCCTTCCCCA--CCCACTGCCCCTTACCaccttttcattttcctaaagTATCTGCTGCCAATAC-CTCTt-tatt-----ataatttacataaagCAAAATACACAG--GTTGTAAGTATA-CCTGTAGTGTT---TAAGTTCACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGCAACCCTCCTCCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTAAgggggggCTGCCAAGAAGTCCCTTTCGTTTGACCCCATTGAATCC-TATCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTcaacacaaaggg-----aaaaaaaaaaggttctagaGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTACACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAAATATCCCAGCGCATTATCCAGCCTCATCTGAGATTAAAATCCGTCCCTTGCCA-TGATTCAAAGACCACTCACTCTT--CATATAACTCCCTGGTTTTT----AAAACCACTGAGTA-AT----TTTGGTCATCCAGTAATCAACCCCTTaacttcccctcccccacctaaAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCcatgttgtatgtgtgtatggtaGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTCATTCACCACCCC---CATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCACAGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAgtaaatgttattaataatagtTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGG-CGTTGGGTCAAGAGCGGTTGCCATACAGGCCccctcccctcaca----------cacacacccctatccCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------gggggaggagcaggaggggaCGACAGGGAGGAGACTTGCCTCCCAGGG-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCCAAAGCA--GCCGAATGCCTGCTTGTGTGGCTCTGCCCTTctgcccctccctttccctccctctgctctccACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAAATC-----------------------TGTGCTCCAAG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21125809 2237 -  24206276 GCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGT-----AGAAGGCCAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTA-AA-GCTC-TCCCCATCCACAACC-----------------ACATAAA--ACAATTTCAATACCCCT-CCCTAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCAGGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTGCACCACCCCCCTTCCCCA---CCACTGCCCCTTACCACCTTTTCATTTTCCTAAAGTATCTGCTGCCAATAC-CTCTT-TATT-----ATAATTTACATAAAGCAAAATATGTAG--GTTGTAAGTATA-CCTGTAGTGTT---TAAGTTCACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGCAACCCTCCTCCTTACACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTAA-GGGGGGCTGCCAAGAAGGCCCTTTCGTTTGACCCCATTGAATCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG----AAAAAAAAAAAGGTTCTAGAGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTACACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAAATATCCCAGCGCATTATCCAGCCTCATCTGAGATTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTT--CATATAACTCCCTGGTTTTT----AAAACCACTGAGTA-AT----TTTGGTCATCCAGTAATCAACCCCTTAACTTCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGCTACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGTGGAG---CCATCTGTCCTGCCACACTCGCAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGTGTGTATGGTAGGGAGTGATGCAAAGGGGAATAGAACAACTGTTGCTGTGGATAGCTTCACTCACCACCCC---CATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGAAAAAGCATCCTGCCTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCACAGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGG-CGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACA----------CACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCAGGG-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCCAAAGCA--GCCGAATGCCTGCTTGTGTGGCTCTGCCCTCCTGCCCCTCCCTTTCCCTCCCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAAATC-----------------------TGTGCTCCAAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22267146 2210 + 158406734 GCAGTTACTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAAGCCAGT-ACTTCAAGAAGCCCTATCT--TAACCCAGAAGTAGTTCCTTAAGGTA-AA-GCTCTTCCCCATCCACATCC-----------------ACATCAA--ACAATTTCAATACCCCTCCCCTAAATGGGGTTTTACCAAAACAACTAGGCATTAAAATGCCTAACAGACA---CAACAGGCCCAGGTTCTGCAAAGCATTCT----------------AAAAAAAGACGTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACGGTACTTTGCTGCCATGGCTGCTGGTTCCTGGACCACAAAGGGA-AGGGAAGGATAGCAGGCTTGGTGTTTCCCAGTGTCAGCACCAACAACAAATGGCTGCACCCACTC-----------CCTACTGCCCCTTACCACCTTTTTATTTTCCTAGAGTATCTGCTGCCAATAC-CTCTTATGAT-----ACAATTTATATGAAGCAAAATATGTAG--GTTGTAAGTATA-CCTGTAGTATT---TAAGTTCACATTTCTTCCTGAATACTCCAAGACTTGC----------CCCTCCTCCTTGTACCACAAGAGGGAAATAAACAGGTAAC-GGAAGGTCTGAGCAGAAGCAGTTCAA-GGGGGGCTGCCAAAAAGTCCCTTTAGTTTGTCCCCATTGAATCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGA-----AAGGAAAAAAGGCTCTGTAGCTGGGAGTTACCCCACC---CCACTTACCCTGCCTACCCCTTTCCAGGATCAATGCTCTTAACCTTACGTGAAGTCAATTCC-AATATCCCAGCACATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCTTTGCCATTGATTCAGAAATCACCCATCCTT--CATATAACTCCCTAGTTTTTAGCCAGAATTA--AAGTA-AT----TCTGGTCATCCAGTAATCAGCCCCTTAAC-TCCCCTCCCCCACCTTAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGTGCACCAGAGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGGCACTCCAGGTGCAGGCTAACAACTC------------CAGGGTAAGTGGAAGAGGCATGCCTGCTTTTACGTGGAG---CCATCTGTCCTGCCACATTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGTGTGTATGGTGGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGTTATCTTTGTTCACCACCCC---CATGCATCCCCTTCCCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCCGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGAAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCGTTGGACAGGAGCACAGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCATGGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCCGCTGCCTCTGCACTTTTGGGGG-CGTTGGAATGAGAGCAGTTGCCATACAGGCCCCCTCCCC--ACA----------CACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACAACAGGGAGGAGACTTGCCTCCCAGGG-AAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCAATCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGCACGACTGAAGTCCTCTCTGCTGACAGCAAAGCCAAAGCA--GCCGACTGCCTGCTTGTGTGGCTCTGCCCTCCTGCCCCTCCCTTTCCCTCCCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAATCCTGCTAGCAAAAATC---------------------TGTGTGCTCCAAG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81370742 2152 + 145441459 GTACTTATCAACCTCCCCACCCCACCCCCCTAAAAAAGCTGGAGATAGCATTCAAGATAACTTTA-CCTTCAAGGGATCCTACCTACTAACCAAGTGGAAA------AAAATATCA-ACCT-TCCTCTTCC------------------------CCCAAA--GCG------------CTTTCCTAAAT-----------AAAACAAAGGGGTATTAAAATGCCTAATGGACAT--CAAGAGTACCAGACTCTGCAAAGCATTTT----------------TTAAAAACACCTGCATCACATAGGGTGGAGGACAGAGAAACCAACACAGCAGTACCTTGCTGCCATGACT-CCTCTTCCTAGACTGGGAAGGTATCTGAAAGGACAGTATACT---------CTACTGCCACCATCAAAGGCAAATGACTACACATAC--------------------------ACCAGTTCTCCATATTCCCATAGAATCTGCT---AATAC-TTTTG-CATT-----GTGAT----ATAAAGTAAAATATACTGTTTTTTTAAGTAAT-ACTATAGCATT---TAAATTCACAATTCTTCCTGGAAATTTTATGATTTTTACCTGATTAATCTTCCCCCAAATACCACAAGAAGGGAATAAACAGGTAATGGGAAGGTCTGAGCAGAAGCAGTTCAAAGATTTGTCAATAATAACTCCCTGTAATTTGTTCCCATTAATCCTATATCAAGAAGACAAGAGATGC-------TAAAGGGGAGTGGC-------CTCTCATCCA-TTAGTTACCTTGAACAAACAGCC----------AGCCTCTCTCTGTATCTGGGAGTTACCCTAGCTATCCTCCTCCCCAGCCAGTCCTTTTCCAGGGTTGATGCTCTTAACCTAATGTTAAGGCAGTCCCAATAATCAAATGAAATTGCTCAG------------TTAA---TCTCCTCTTGCTA-TGACTCAG-GGCTACCCAACTTTCACATATAGCTCTTTAGTTTT-----AAAACCACTAAACAGAA----TCTGGTCATTCAGTAATCAGTTCCTTAAT-TCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGCTTAGATGGATCATATCTGCA-TAAGGTTGAAA--CCTTGGGGACCCTTGTCAGGGCTACCTCAGGTGTAGACTTAAAACTCCAGGGAATTTGTCAGGGCAAACAGAAAAGCTGTATCTGCCTTTACCAGCAGTCTCTATCTGTCATGCAACACTCACAGCTA------CCATTGCTTGCAAAACAGCTCTGTGTTGTGTGTATATA---GAGGGAGTGATGCAAAGGGGAACAGAACAACTGTTGCTTTGG-TATCTTAGCTCACCA-CCC---CACTCGGCCCCCTCCCCTAGGCAGCCGCAAGTATTCTCTTGCACTCACCTGACTGTGTGCTGCTCTGGGCTGAGGAGTCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCAGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGCCATTTGCATCTGGGAGGCCACGGGGAGATTCTTGCGCAGAGGTGGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGAAAGGAGAACAGCAAAACAAACCCCTAGAGTTAAGGGTTGTTTTTCTCAATACTATTAACAATAAATACCACCAATATTAGTTTCCTCAGGTTCAGAGGCAAGGTATCCAAGCTGGCTAGCTGCTGCAGCTGCTGCCTCTGTACTTTTGGCAG-CATTCAAGCAAGAATAGTTGCCATATA-GCCCCCTCCCC----A----------CACGCACCCCTATCCCGTCTGCATTACAGACGAGG-TAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCTGGCTGAGCCTAGCAATAGAGAACCGCATCATCTCTCACAGAACGGGGCGGAGGAGGGGGAGGAGCAGGAGGGGACGACTGGGAGGAGACTTGCCTCCAAGGG-AAAGATAGCACAAGAGCTACTTGGAATAGT-CTGATGCAGTATGGTTAAGTCAGGGTTGTGAGAAAGTGCCGTCCCTCCAGTCTCTGTCGGCAATGGTGGCCAAGC-------------------------------------CAAAAGCAAAGCACTGTGGACTGCTTGCCTGTACTGATCTGTGCTCCTGCCGCTCCCTCTCTCTCCTCCTGCTCTCTA-CCTCAAACCCCTAAACGCAACAGTCCTGGACTTTCTCCAGCTGCTCGCTCAAGCCCTGGCTTTGTAGCCC-------------ACAATCCTGCTAACAAAAATAAGTAAGTAAAAAAATAGTATCTGTGTGCTCCAG-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54430739 2270 +  91889043 GCAGTTACCAACCT-------------TTCTGGATAAACCTGCCTCAAC-----TGAAGGCCAATAACTTCAAGAAACTCTACCT--TGACCCAGAGTTAGTTATTTAGGGCA-AA-GCTCTTTCCCATCCTCAAATTaaaaaaaaaaaaaaaaaaaaaaa--aaaaaTCCAACCCCCTACCCTCAAATGGGATTTTGCTGAAACAACTGGCCATTAAAATGCC-AGCAGACACAACAACAGTCCCAGGCTCTGCAAAGCATTCTTaaaaaaaaaaaaaaaaaaaaaaaaCCTGCACCAAATAGGGTGGAGGCCAGAGAAATCAACAAGACAGTACCTTGCTGCCATGACTGCCAGTTTCTGGAGTGGGGGAGGC-GAGGAAGGACAGCAGGCTCAGTGAATCCCACGATCAGCACCAACAGCAAATGGCTGCCCCACCTCC-----------------------ACTACCTTTCCATCTTCCTAAAGTATCTGCTGCTAGTACTCTTTT-TATTAAGACACAATTTATATAAAGCAAAATACATGG--ATTTTAAGT-TA-CCTATCATATTTCCTAAGTT--CATTTCTTGCTGAATACTCCAAGACTTG-GTCTGGTCAACCGTCCCCTGTGTACCACAAGAAGGTAATGAACGGGCACTGGGAAGGTCTTGCCAGAAGCAGCTCAA---GGGGTTGCCCAGAAGCCCCTTCAATCTGTCCCCATCAAAACC-TCTCAACGCAATAAGGGGTCCAGGGTCTTAAAGGGGAGTGGCTCTTCCTCCTCCATCCATTTGGTTGCCCTTCACACAAAGAA--------AAACAAAGGCTCCGCAGCTTAGACTTACTCCACC---CCACTGACCCTGCCTATCTCTTTCCAGGGTCAAGACTCTCACCCAGATGGTAAGTCAATTCC-AATATCCTAGTGC--CACCCAGCCTCACCTGAGGTTAAAATTATTCCCCTGCCA-TAATTCAGAGACCACCTATCCTC-GTATACAGGTCCCTAGTTTTA----AAAACCACTGAGAA-ACAGAATCTGGACATCCAGGGATCAGCCCCTCTGG-TCCCCTCCCCCACCTAAAAGTGTTTTGCTTCATCATCTCCAAGACAGGCCTGGGCTCGAGGAGGTTAGCTGGATCTTTTCTGCATTAAGACTGTCA--CCTTGGGGACCCTTCTCAGGGCTACCCCAGGTGCAGACTAATAACTCCAGGGAATTTATCAGGGTAAGTGGAAAAGCCATGCCTGCCTTTACAAGCAA---CCATCTGTCCTGCCACACTCACAGCCAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATTGGGGTG-GGGGGGGAGTGATGCAAAGGGGAAAAGAACAACTGTTGCTGTGGATGTCTTCGCTCACCACCCCATACACCCCCCCCCCTCCCCCAGCCAACT-----CATTTTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCCGAGTCCTGGGTGCTCCAGGGTCGGTCGCAGCCTGTGAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCCCGGGAAGAATCTTGCGCAGAGGTGGGGAAAAGCATCCTGCTTGCAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGGACAGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAGTATTATCAACAATAAATATTATTAATAATAGTTTCCCCAAGCCCAAGGAGCAGACATCCAAGCTGGCTGGATGCTGTGGCCGCTGCCTCTGCACTTTTGGGGG-CGTTAGAGCAAAAGCAGTTGCCATACAGCCCCCCTCCCC--ACA----------AACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAT-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCCGGGAAAAGATAGCACAACAGCTACTTGGAACAGTCCGGGTGCAGTGCCGGTAAGTCAGGGTTCTGAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCGGCCCTCGGGCACGACTGAAGTCCTCTCTGCTGACAGCAAAGCCAAAGCA--GCCGACTGCCTGCTCGTGTAGCTCTGCCCTCCTGCCCCTCCCTTCCCCTCCCTCTGCTCTCCACCCCCAAACCCAAAAACACTCCAGTCCTGGACTCTCTCCAGCTGCTTGCTCAAGCCCTGGTTTTGCAGCCCAATGCAAAGCTTCACAATCCTGCTAGCAAAAATC---------------------TATGTGCTCCAAG
i canFam3.chr3              C 0 C 0

a score=943914.000000
s hg38.chr15_KI270850v1_alt    361343 297 +    430880 TGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAATACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAGAAAGGGGGTAAGC--GTTGGCAGAGTGGGGGAGAGTCACT-----GGGCTGTTCCAGGTACACCTCAAAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGGTTCCCTCAT--CCCAACAAGATGGGTATTAGTC
s ponAbe2.chr15_random       10151578 297 +  10928107 TGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAGAAAGGGGGTAAGC--TTTCGCAGAGTGGGGGAGAGTCACT-----GGGCTGTTCCACGTACACCTCACAGGACATGGCCCACAACCCACATGCCAGAGTGAGATCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGGTTCCCTCAT--CTCAACAAGATGGGTATTAGTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17231489 295 - 121039945 TGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGCCTAGAGCAGTTTATCACAGAGAAAGGGGGTAAGC--TTTGGCAGAGTGGGGGAGAGTCACT-----GGGCTGTTCCAGGTACACCTCACAGGACATGGCCCACCACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGGTTCCCTCAT--CCCA--CAGATGGGTATTAGTC
i nomLeu3.chr6              C 0 M 906
s rheMac3.chr7              106705360 297 - 170124641 AGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTATACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAGAAAGGGGGTAAGC--TTTGGCAGAGTGGGGGAGAGTCACT-----GGGCTGTTCCAGGTACATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108438825 297 - 171882078 AGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTATACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAGAAAGGGGGTAAGC--TTTGGCAGAGTGGGGGAGAGTCACT-----GGGCTGTTCCAGGTACATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             123291 297 +    130206 AGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCACAAAAACACTGTACACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTATCTAGAGCAGCTTATCACAGAGAAAGGGGGAAAGC--TTTGGCAGAGTGGGGGAGAGTCACT-----GGGCTGTTCCAGGTACATCTTATAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGGCTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21128046 297 -  24206276 AGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTACACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAGAAAGGGGGTAAGC--TTTGGCAGAATGGGGGAGAGTCACT-----GGGCTGTTCCAGGTACATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22269356 287 + 158406734 TGGCCCCTGAGCAGCACTCTGACACAGCAGTGTTTACCACTGAGAAGCAAGATAACCTTCAGAAAAACAATGTACACTTGGAC---------CAACACCTGGTGTTCCAGGCTTGTCTAGAACAGCTTATCACAGAGAAGGGGGGTCGGT--TTTGGCAGAGGATGGGAGAGTCACT-----CGACTTTTCCAGGTACACCTCATAGGACATGG-CCACAACCCATATGCCTGAGTGAAACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGACTCCCTCAC--CCCAATAAGATGGGTATTAGTC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81372894 296 + 145441459 TGGCCTCTGAGAAGTATCTTGACACAGCATTGTTTACCACTGAAGAATGGGAAAACCATCAGAAAAACACTGTATATTTGGACCCTTGGGAACAACACCTGGTGCTATGGGACTGTCTGGAGCTGCTTATCATAGAAAAGAGGGAGCAGCCTTTTGTGTGTGTGGGGGGGGGTGAATTTATGAGGCTATTCTAGGTACATCTCACAGGGCCTGGCCTACAACTTATATATCAG---GAGATAT----------AGATAAGATCCATGTTACCCAGGCTCCCTTATACACCAACAGAATATATACTAGCC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54433009 265 +  91889043 TGGCCCCTAAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAATGGGATAACCTTCAGGAAAACACTGCACACCTGGACCCTGGGGACCACCACCTGGTGCTACAGGCTTGTCTACAACAGTTCATCACAGAGAAAAGGGGTCAGC--TTTGGCAGAG-GGAAGGGAGTCACT-----GGGCTGCTC---------------AGGTGTGTCCCATAACCCACATG-CGGCATAAGCTGTGCCCTGACCAGGACA--ATTC-TG---------------CAC--CCCAACAGGATGGGCACAAGTC
i canFam3.chr3              C 0 C 0
e panTro4.chr15              80142980 904 +  99548318 M

a score=723391.000000
s hg38.chr15_KI270850v1_alt    361640 377 +    430880 ATGAACAGATACAGC---GGCTCAGCTCCTCCCCT-----CCCTCCTGCAACTGTAGGCACAGACTGAGGAAACACTCTC-GAAGCAGCATCTGACA-----AACC-----AAGA------GAAACAGTCTCTGAAGTATCGTTACGCCCT-ATTAGAAACACCAAACTCTGAAACCTAATCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCTGAGCATGATACAGGGC-AGCCGTGAGGGCCACTGATGCCTCTAAC---------ATCCAGGCCCTCTCTCAGAGGTGCTGCACAAGACCAATGC-TTATTTCTGTGGCCACTCACAGCTCCAGCAACAAAGACTAAGAAAATTC--AGCTTCTGGAGCTTCCGCCATTTCCTCTTTGC---C-ATCTCCTCCC--
s ponAbe2.chr15_random       10151875 373 +  10928107 ATGAGCAGATACAGC---GGCTCAGCTCCTCCCCT-----CCCTCCTGCAACTGTAGGCACAGGCTGAGGAAACACTCTC-AAAGCAGCATCTGACA-----AACC-----AAGA------GAAACAGTCTCTGAAGTATCGTTACGCCCT-ATTAGAAACACCAAACTCTGAAACTTAATCACCTAGCTCTGTCAATATTGCTTCCCTTGC------CCTTCCAGGAGCCCTGAGCATGATACAGGGC-AGCCGTGAGGGCCACTGATGCCTCTAACTGAGAGAGGGCCCAGGCCCTCTCTCAGAGGTGCTGCGCAAGACCAATGCTTTATTTCTGTGGCCACTCACAGCTCCAGCAACAAAGACTAAGAAAATTC--AGCTTCTGGAGCTTCCGCCATT------------------TCCTCCC--
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106705657 372 - 170124641 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTC----CCCTCTTGCAACTGTAGGTACAG-CTGAAGAAACACTCTC-AAAGCAGCGTCTGACA-----AACC-----AAGA------GAAACAGTCTCTGAAGTATTGTTA-------ATTAGAAACACCAAACTCTGAAACTTAGTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCTGAGAATGATACAGGGC-AGCTGTGAGGGCCACTGATGCCTCCAAT---------GCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGGCCAATGCTTTAGTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATATTC--AGCTTCTGGAGCTTCCGCCATTTCCCCTTTGC---C-ATCTCCTCCC--
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108439122 372 - 171882078 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTC----CCCTCTTGCAACTGTAGGTACAG-CTGAAGAAACACTCTC-AAAGCAGCGTCTGACA-----AACC-----AAGA------GAAACAGTCTCTGAAGTATTGTTA-------ATTAGAAACATCAAACTCTGAAACTTAGTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCTGAGAATGATACAGGGC-AGCTGTGAGGGCCACTGATGCCTCCAAT---------GCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTAGTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATATTC--AGCTTCTGGAGCTTCCGCCATTTCCCCTTTGC---C-ATCTCCTCCC--
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             123588 372 +    130206 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCATC----CCCTCTTGCAACTGTAGGTACAG-CTGAAGAAACACTCTC-AAAGCAGCGTCTGACA-----AACC-----AAGA------GAAACAGTCTCTGAAGTATTGTTA-------ATTAGAAACACCAAACTCTGAAACTTAGTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCTGAGAATGATACAGGGC-AGCTGTGAGGGCCACTGATGCCTCCAAT---------GCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTAGTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATATTC--AGCTTCTGGAGCTTCTGCCATTTCCCCTTTGC---C-ATCTCCTCCC--
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21128343 372 -  24206276 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTC----CCCTCTTGCAACTGTAGGTACAG-CTGAGGAAACACTCTC-AAAGCAGCATCTGACA-----AACC-----AAGA------GAAACAGTCTCTGAAGTATTGTTA-------ATTAGAAACACCAAACTCTGAAACTTAGTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCTGAGAATGATACAGGGC-AGCTGTGAGGGCCACTGATGCCTCCAAT---------GCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTAGTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATATTC--AGCTTCTGGAGCTTCTGCCATTTCCCCTTTGC---C-ATCTCCTCCC--
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22269643 389 + 158406734 ATAAGCAGATATAGT---GGCCCAGCTCCACTCCTCCCCACCCTCCTGCAACTGCAGGCACAGACTGAGGAAACACTCTCAAAAGCAGCATCTGACA-----AACC-----AAAACAAGAGAAAACAGTCTCTAAAATATTGTTATGACCT-ATTAGAAACACCAAACTCTGAAGCTTAATCACCCAGCTTTGTCAATATTGCTTCTCTTGC------CTTTCTAAGAGCCCTGAGCACAATATTGGGC-AGCTGTGA-GGCCACTGATGCCTCTAAT---------GCCCAGGCCCTCTCTCAGAAGTGCTGCACAAGACCAGTGCTTTATTTTTGTGGCCACTCACAGCCCCAGCAACAAAGTCTAAGAAAGTTC--AGCTTCTGGAGCATCCACCATTTCCTCTTTGC---C-GTGTCCTTCC--
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81373190 339 + 145441459 ACAGGTGGACACAA----AGCCCAGCTCTTCTTTT-----CCCCTTTGCAACTAAATCCACAGATGGCACAACTACTCCC-AAAGTAGTATCTGACA-----AGCCACACTAAGA------GAAACAATCTCT---------------------------CAC----------------ATCATCTGGC--TGTCAGTACTGTTTCCCTTGCATTTGTCTTTCCAGGATCCCTCAGAGCGATGGTTGGCAAGCTGGGACTACCACTGACACCTTTAAC---------TCCTAGGCTTTCT-TCTGAGATACTGCCTAGGAAGAAC---CTATTTCAGTGACCCCACCCC-CGCCAGCTACGA----TGACAAAATTC--AACTTCTTGAGCTTCTGTCATTTCCTTTTTACGAGT-ATCTCCTTCC--
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54433274 349 +  91889043 AGGAGCACACACAGGTTAGGTCCAGCTCCCCTT-------CCCTCCTGCACCCACAGGGACAGACTGGGGCCACACTAAC------AGTTTCAGAGACGTGGAAAG-----GAGA------GAAGCAGTCCCAGCATTCTGGGTGTCCAGTGTTCAGGGGCTCCT--------------ACTACCCAGCCCTGCTGACAC--CCTTCCCTGA------CCTTCT--GAGCATTCAGAGCTACACTGGCC-AGCTGGGAGGCTCACTGATGTCTC-------------ACTCAGG-------------GTGCTGCCCAGGGCTAAGGCCCTGCTTCTGTG-CCACTCACAGCTCCGGCCACAAAGTCCAGCTCTGCCCAGAGATTCCAGAACCTCCGCCATTTGCTCTTTGC---CAATGTGCTCGCCT
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               17231784 906 - 121039945 M
e panTro4.chr15              80142980 904 +  99548318 M

a score=1529716.000000
s hg38.chr15_KI270850v1_alt    362017 536 +    430880 ACATCGGTCCTTTTCCAACATGAGCCCAGGGTCACTG---GGCTTCTTCCTC-ATAAAGGAGGGTAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCAAACCTGGAC----TCAGCTGGTAGCACTCCACCT-GCTTGTT--CTCCCCTGTTGCAAGGAGAAGCAAGCAGAT-ACGGGAAGCATGCCCACCTGGGACCTCCCATGGCA------------GGGTC----------------GAGAGAATAATGCT----------GCCACAGAAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACAGGCACTCAGGCATAG--CCTAGAAGGGAAAATT--ATCAGT---------------CTCCTTCCTTTGGAGA-------------------------------------------------TTTTTTTTTTTTTTT--AAAGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTC-CTGGCTGTAGATATTCTGCTTGCTCCCTATCTGTGTTTGTCAAAGCCTTGTTC--ATCATGGCAAAGGCCTAGCAAAAAT-CACCCATACTGGTGCTGCCCCTA-CCCCTGACTACTC---CCCTCCTGCTTCTCTATGTTCACCCTTCCCTCAAGCTAAGGATATA
s panTro4.chr15              80143884 533 +  99548318 ACATCGGTCCTTTTCCAACATGAGCCCAGGGTCACTG---GGCTTCTTCCTC-ATAAAGGAGGGTAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCAAACCTGGAC----TCAGCTGGTAGCACTCCACCT-GCTTGTT--CTCCCCTGTTGCAAGGAGAAGCAAGCAGAT-ACGGGAAGCATGCCCACCTGGGACCTCCCATGGCA------------GGGTC----------------AAGAGAATAATGCT----------GCCACAGAAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACAGGCACTCAGGCATAG--CCTAGAAGGGAAAATT--ATCAGT---------------CTCCTTCCTTTGGAGA----------------------------------------------------TTTTTTTTTTTT--AAAGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTG-CTGGCTGTAGATATTCTGCTTGCTCCCTATCTGTGTTTGTCAAAGCCTTGTTC--ATCACGGCAAAGGCCTAGCAAAAAT-CACCCATACTGGTGCTGCCCCTA-CCCCTGACTACTC---CCCTCCTGCTTCTCTATGTTCACCCTTCCCTCAAGCTAAGGATATA
i panTro4.chr15             M 904 C 0
s ponAbe2.chr15_random       10152248 532 +  10928107 ACATCAGTCCTTTTCCAACATGAGCCCGGGGTCACTG---GGCTTCTTCCTC-ATAAAGGAGGGTAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCAAACCTGGAC----TCGGCTGGTAGCACTCCACCT-GCTTGCT--CTCCCCTGTTGCAAGGAAAGGCAAGCAGAT-ACGGGAAACATGCCCACCTGGGACCTCCCATGGCA------------GGGTC----------------GAGAGAATGCTGCT----------GCCACAGAAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACAGGCACTCAGGCATAG--CCGAGAAGGGAAAATT--ATCAGT---------------CTCCTTCCTTTGGAGA-----------------------------------------------------TTTTTTTTTTT--AAAGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTG-CTGGCTGTAGATATTCTGCTTGCTCCCTATCTGTGTTTGTCAAAGCCTTGTTC--ATCACGGCAAAGGCCTAGCAAAAAT-CACCCATACTGGTGCTGCCCCTA-CCCCTGACTACTC---CCCTCCTGCTTTTCTATGTTCACCCTTCCCTCAAGCTAAGGATATA
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106706029 534 - 170124641 ACATCGGTCCTTTTCCAACATGTGCCCTGGGTCACTG---GGCTTCTTCTTC-ATAAAGGAGGATAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCTGGAC----TCAGCTGGTAGCACTCCACCT-GCTTGTT--CTCTGCTGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGAGACCTCCCATGGCA------------GGGTC----------------GAGAAAATGCTGCT----------GCCATAGGAATAGCTGGTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACAGGCACTCAGGCATAG--CCTAGAAGGGAAAATT--GTCAGT---------------CTCCTTCCTTTGGAGA-----------------------------------------------------TTTCTTTTTTT--AAAGCTTTGCTGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGCCCCCTATCTGTGTTTGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACTC---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAAGATATA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108439494 534 - 171882078 ACATCGGTCCTTTTCCAACATGTGCCCTGGGTCACTG---GGCTTCTTCTTC-ATAAAGGAGGATAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCTGGAC----TCAGCTGGTAGCACTCCACCT-GCTTGTT--CTCTGCTGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGAGACCTCCCATGGCA------------GGGTC----------------GAGAAAATGCTGCT----------GCCATAGGAATAGCTGGTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACAGGCACTCAGGCATAG--CCTAGAAGGGAAAATT--GTCAGT---------------CTCCTTCCTTTGGAGA-----------------------------------------------------TTTCTTTTTTT--AAAGCTTTGCTGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGTCCCCTATCTGTGTTTGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACTC---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAGGATATA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             123960 533 +    130206 ACATCGGTCCTTTTCCAACATGTGCCCTGGGTCACTG---GGCTTCTTCTTC-ATAAAGGAGGATAGGGCAACAGGCCCAGACTCATCAGGCAGGCTGCTCACACCTGGAC----TCAGCTGGTAGCACTCCACCT-GCTTGTT--CTCTGCTGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGAGACCTCCCATGGCA------------GGGTC----------------GAGAAAATGCTGCT----------GCCATAGGAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACAGGCACTCAGGCATAG--CCTAGAAGGGAAAATT--ATCAGT---------------CTCCttcctttggaga-----------------------------------------------------tttcttttttt--aaagctttgctGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGCTCCCTATCTGTGTTTGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACTC---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAGGATATA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21128715 533 -  24206276 ACATTGGTCCTTTTCTAACATGTGCCCTGGGTCACTG---GGCTTATTCTTC-ATAAAGGAGGATAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCTGGAC----TCAGCTGGTAGCACTCCACCT-GCTTGTT--CTCTGCTGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGGGACCTCCCATGGCA------------GGGTC----------------GAGAAAATAATGCT----------GCCATAGGAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACAGGCACTCAGGCATAG--CCTAGAAGGGAAAATT--ATCAGT---------------CTCCTTCCTTTGGAGA-----------------------------------------------------TTTCTTTTTTT--AAAGCTTTGCTGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGCCCCCTATCTGCGTTTGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACTC---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAGGATATA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22270032 531 + 158406734 ACATCAGTCCTTTGCCAACATGAGGCCTGGGTCACTGTGCTGCTTCCTCCTC-ACAAAGGAGGGTAGGGCAACAGGCCCAGATTCAGTAGACAGGCTGCTCGCACCTGGAT----TCAGCTGGTAGCACTCCATCT-GCTTGTC--CTCCCCCGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATTCCCACCTGGGACCTCCCATGGCA------------GGGTC----------------AAGAG-ATACTGCT----------GCCATAGGAATAGCT-GTTCAGAGCTTCCTGTA--GTACACCC-TGTGTCCACAGGCACTGAGGCATAG--CCTAGAGGGGGAAATT--ATCAGT---------------CTCCTTCCATTGGAGA----------------------------------------------------TTTTTTTTTTTT--AAAGCTTTGCTAC--TGTCATCCATCCACATTATTCTTG-CTGGCTGTAGAAACTCTGCTTGTTCCCTATCTGTGTTTGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCAAGCAAGAAT-TGCCCATACTGGTGCTGCCCCCA-CCCCTGACTACTC----CCTCTTGCTTCTCTACATTCACCCTTCCCTC-AGCTAAGCATATA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81373529 516 + 145441459 ATAGAAATCTTTCCCCAAT---------------------GTCTTA---------------------------AGGGCCAAAAT------------TGCTTATGCCTCTACGAGGCTGGCTGGCAGTATTCCATTT-GCCTGTTCACACCCTTGTTGCAAGGAAAAGCAAGCAGGTAATCGGAATCATGCCCACCTGGGACTG---ATGGTACAGCGTCTGAGCCAGTT----------------AAGACAGTGGGGTTTGTGCTGTTAGCCTGAGGAATGTCT-GGTCACAGCTTTCTGCA--GCACATTC-TG------AACACACTCAAGCAAAGACCCTGGGAGGGGGGTGTGAATCAGTCTGGGGGAGGGGGGACTCCTTCCTTTAGAGG-------------------------------------------------ATTTTTTTTTTTTTT--AAAGCTGAGCTGCTGTGTCATCCACCTACATTATTCCTGTCTGGCTGGAGATACCCTGCTTGC------TCTTTGTGTGTCAAAGCTGTATTCTTATCACTGTACAGGCTGAGGAAGAATGCACCCATATTAGAGCTGTCCCTG-CCCCTAACT-CTG---CTCCTTTGCTCCCCTATGTCCACCTTTCCTCCAAGCTAAGGCTATA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54433623 594 +  91889043 ATATCAGTCCCTTTCCATCATGA-CCTGTAGTCACAA---GGCTTCCCCACCAAAAAAAGAGGGTAGAGCAAAAATCCCAGCCTCAGCAGACAGGCCGCTGGCACCCAGAC----CAGGCTGGTAGCACCTCGCCTCGAGTCTC--CTCCCATGCTACAC-AAGTAGTAACCAGAT-ACAGGCAGCAGGCCCACCTGGGACCATCC--GACA------------GAGTCCCAGATGGGCGGTGCAGGGATTATGCTGTT---------AGCCACAGGAGAAGCC-AGACAGAGCCACCTGCACTGTCTACCCTTACGTCCTTAGGCACTCAGGCAGAG--CAGAGAGGGGAAAAGTG-ACCAGTCCATAGCAGGGA---CTCCTCCCCTTGGAGGTGttttttttccatgtttttctttctttctttctctctctttttttttttttttttttttttttAGAGAGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTGTCTGGCTGTAGATACTCTGCTTGCTCCC------TGTTTGTTAAAGCCCTGCTC--ACCACTGT---------------AC-CA-------TGCTGTTGTCCTCA-CCCCAGAACACTCACTCCCTCCTGCTTCTCTATGTTCACCCTTCACACAAACTAAGGATATA
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=219452.000000
s hg38.chr15_KI270850v1_alt    362553 70 +    430880 CTTTAGACTTCACCCATACATATTAGTTACCAAAA-CACA-ATGCTTCCTTCAAAAACATCCATATTTAAGT
s panTro4.chr15              80144417 70 +  99548318 CTTTAGACTTCACCCATACATATTAGTTACCAAAA-CACA-ATGCTTCCTTCAAAAACATCCATGTTTAAGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10152780 70 +  10928107 CTTTAGACTTCACCCACACATATTAGTTACCAAAA-CACA-ATGCTTCCTTCAGAAACATCCATATTTAAGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17232690 70 - 121039945 CTTTAGACTTCACCCATACATATTAGTTACCAAAAGCATA-ATGCTTCCTTCA-AAACATCCATATTTAAGT
i nomLeu3.chr6              M 906 C 0
s rheMac3.chr7              106706563 70 - 170124641 TTTTAGACTTCACCCACACGTATTAGTTACCAAAG-CAGA-ATGCTTCCTTTAAAAACATCCATATTTAAGT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440028 70 - 171882078 TTTTAGACTTCACCCACACGTATTAGTTACCAAAG-CAGA-ATGCTTCCTTTAAAAACATCCATATTTAAGT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             124493 70 +    130206 TTTTAGACTTCACCCACACGTATTAGTTACCAAAG-CAGA-ATGCTTCCTTTAAAAACATCCATATTTAAGT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21129248 70 -  24206276 TTTTAGACTTCACCCACACATATTAGTTACCAAAG-CAGA-ATGCTTCCTTTAAAAACATCCATATTTAAGT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22270563 61 + 158406734 CTTCAGACTTCACCCATATGTATTAGTTACCAAAG-C----ATGTTTCCTTTA------TCCATACTTAAGT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81374045 61 + 145441459 CTGTTAAATTAACTCATGT----------CTTAAA-TATATTTTTTTCCTTTTAAGCCATTCACTTCTAggt
i mm10.chr7                 C 0 I 7524
s canFam3.chr3               54434217 70 +  91889043 CTTTAAAAATTATTTTTATGTACTAATTACAAAAA-TGTA-ATGCTACCTTTAAGACAATCCACATTTAAGT
i canFam3.chr3              C 0 C 0

a score=102281.000000
s hg38.chr15_KI270850v1_alt    362623 33 +    430880 ATCTATTCTCCCCTACACCAAATATCTATATAA
s panTro4.chr15              80144487 33 +  99548318 ATCTATTCCCCCCTACGCCAAATATCTATATAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10152850 33 +  10928107 ATCTATTCCCCCCTAAGCCAAATATCTATATAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17232760 32 - 121039945 ATCTATTCCCCCC-AAGCCAAATATCTATATAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106706633 33 - 170124641 ATCTATTCCCCCCTAAACCAAGTATCTATATAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440098 33 - 171882078 ATCTATTCCCCCCTAAACCAAGTATCTATATAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             124563 33 +    130206 ATCTATTCCCTCCTAAACCAAGTATCTATATAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21129318 33 -  24206276 ATCTATTCCCCCCTAAACCAAGTATCTATATAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22270624 33 + 158406734 ATCTAGTCCCCCCTAAATCAAGTATCTATATAA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54434287 32 +  91889043 ACCCA-TGTCCCATAAACCAGCTATCCATTTAG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81374106 7524 + 145441459 I

a score=406860.000000
s hg38.chr15_KI270850v1_alt    362656 114 +    430880 TCCC--CATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCCATTTTCTACCCATT--AAAATCAGGGTGACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA--------ATCAAC
s panTro4.chr15              80144520 116 +  99548318 TCCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCCATTCTCTACCCATT--AAAATCAGGGTGACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA--------ATCAAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10152883 116 +  10928107 TCCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCCATTCTCTACCCGTT--AAAATCAGGGTGACTGTGCATATGATTACCGCCATCCCTCATGAGGAGAGA--------ATCAAC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17232792 116 - 121039945 TCCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCCATTCTCTACCCGTT--AAAATCAGGGTGACTGTGCATATGATTACCCCCATCCCTCACAAGGAGAGA--------ATCAAC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106706666 116 - 170124641 TCCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCCATTCTCCAACCGTT--AAAATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCATGAGGAGAGA--------ATCAAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440131 116 - 171882078 TCCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCCATTCTCCAACCGTT--AAAATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCATGAGGAGAGA--------ATCAAC
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             124596 116 +    130206 TCCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCCATTCTCCAACCGTT--AAAATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA--------ATCAAC
i papAnu2.JH685126          C 0 I 32
s chlSab2.chr29              21129351 116 -  24206276 TCCCCTCATACCTCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCCATTCTCCAACCGTT--AAAATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA--------ATCAAC
i chlSab2.chr29             C 0 I 32
s calJac3.chr6               22270657 113 + 158406734 TCCTCTC-TACCCCAAACTGAGGGCATCTA-TGTCTAGAAGTAGCCATTCTCTACCCATT--AAAATGAGGGTAAC--TGCAGGTGATTACCCTCATCCCTCACTCAGAGAGA--------ATCAAC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81381630 123 + 145441459 -TCTCTC-TACCCTAACTAAAAAGTATTTATTGTCCAGAAGTAGCTATTTTCCTTTTATTTCAAAATCAGAATATATGTATATATGGATACT-TTGCACCTCAGACAGAGAAA-TATAATCATTAGC
i mm10.chr7                 I 7524 C 0
s canFam3.chr3               54434319 123 +  91889043 TCCCTTC-CACCTCACGGTGAGGCCTCCTA-TGCCTAGAAGCTACTGCCCCCCAACCTCT--AAAATGAGAGTATTTGTGTCTGTGACTACCCCCATGCCCCTGGCAAAGAGAATCTAATCACCAAC
i canFam3.chr3              C 0 C 0

a score=3276.000000
s hg38.chr15_KI270850v1_alt    362770 1 +    430880 T
s panTro4.chr15              80144636 1 +  99548318 T
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10152999 1 +  10928107 T
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17232908 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106706782 1 - 170124641 T
i rheMac3.chr7              C 0 I 31
s macFas5.chr7              108440247 1 - 171882078 T
i macFas5.chr7              C 0 I 31
s calJac3.chr6               22270770 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81381753 1 + 145441459 T
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434442 1 +  91889043 T
i canFam3.chr3              C 0 C 0
e chlSab2.chr29              21129467 32 -  24206276 I
e papAnu2.JH685126             124712 32 +    130206 I

a score=16050.000000
s hg38.chr15_KI270850v1_alt    362771 14 +    430880 ATGCTcttgctact
s panTro4.chr15              80144637 14 +  99548318 ATGCTcttgctact
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153000 14 +  10928107 ATGCTGttgctact
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17232909 14 - 121039945 ATGCTcttgctact
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22270771 14 + 158406734 ATGCTcttgctatt
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81381754 14 + 145441459 ATACTcttgttact
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434443 11 +  91889043 ACACtgctgcc---
i canFam3.chr3              C 0 C 0
e chlSab2.chr29              21129467 32 -  24206276 I
e papAnu2.JH685126             124712 32 +    130206 I
e macFas5.chr7              108440248 31 - 171882078 I
e rheMac3.chr7              106706783 31 - 170124641 I

a score=476315.000000
s hg38.chr15_KI270850v1_alt    362785 134 +    430880 caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccaccc-aagaccgacagaattga------gatctgc--attttaacaagatccccagttaatatatatgta
s panTro4.chr15              80144651 134 +  99548318 caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatgtatgta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153014 134 +  10928107 caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccaccc-aagaccgaaagaattga------gatctgc--attttaacaagatacccagttaatacatatgta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17232923 134 - 121039945 caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccacca-aagaccgacagaattga------gatctgc--attttaacaagatccccagttaatatatatgta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106706814 126 - 170124641 CAATATACagta----tggcagaccagcaatatgagcatcaccaggagcttgtt----atac----tctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatacatgta
i rheMac3.chr7              I 31 C 0
s macFas5.chr7              108440279 130 - 171882078 CAATATaaagta----tggcagaccagcaatatgagcatcaccaggagcttgttataaatac----tctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatacatgta
i macFas5.chr7              I 31 C 0
s papAnu2.JH685126             124744 130 +    130206 CAATATACAGTA----TGGCAGACCAGCAATATGAGCATCACCAGGAGCTTGTTATAAAtac----tctcaggccccaccc-aagACTGACAGAATTga------gatctgc--attttaacaagatccccagttaatatatatgta
i papAnu2.JH685126          I 32 C 0
s chlSab2.chr29              21129499 130 -  24206276 CAATATACagta----tggcagaccagcaatatgagcatcaccaggagcttgttataaatac----tctcgggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaacatatatgta
i chlSab2.chr29             I 32 C 0
s calJac3.chr6               22270785 134 + 158406734 caaagtatagtg----tgacagaccagcaatgtgagcagcaccaggagtttgttataaatcctgagtctcaggccccaccc-acgaccgatggaactga------gatttgc--attttaacaagattcctagttaatatatacgta
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81381768 124 + 145441459 -------cagtaatatcagcaagtctataccatcagtatcactgggaggctgtt-tacaaac----tcttaagatccactt-gaaacctgtggaattga------a--cttc--attttaataagattcccaattactacatatcta
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434454 143 +  91889043 caaagtctcatg----tgacagaccaacactagaagtaccaccagaaacttgttataaacacagaatctcagccccctccctgaaacctacggaattgatctgcggatctacggattttaacaagattcccagttgatatctatgca
i canFam3.chr3              C 0 C 0

a score=22356.000000
s hg38.chr15_KI270850v1_alt    362919 6 +    430880 tgcaaa
s panTro4.chr15              80144785 6 +  99548318 tgcaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153148 6 +  10928107 tgtaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17233057 6 - 121039945 tgcaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106706940 6 - 170124641 tgcaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440409 6 - 171882078 tgcaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             124874 6 +    130206 tgcaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21129629 6 -  24206276 tgcaaa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22270919 6 + 158406734 tgcaaa
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81381892 6 + 145441459 tgcaca
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54434597 0 +  91889043 C

a score=447103.000000
s hg38.chr15_KI270850v1_alt    362925 144 +    430880 aaaagtttgagCagtcgggtgtggtggctcatgcctataatcccagaactttgggaagattgcttgagcccaggagttcaaggcagcagtgaaagccatgactgcaccactgtactccagcctgggcgacaaagtagttcccat
s panTro4.chr15              80144791 144 +  99548318 aaaagtttgagCAgtcgggtgtggtggctcatgcctataatcccagaactttgggaagattgcttgagcccaggagttcaaggcagcagtgagagccatgactgcaccactgtactccagcctgggcgacaaagtagttcccat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153154 144 +  10928107 aaaagtttgagCAgtcgggtgtggtggttcatgcctataatcccaaaactttgggaagattgcttgagcccaggagttcaaggcagcagtgagagccatgactgcaccactgtactccagactgggcgacaaagtagtccccat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17233063 144 - 121039945 aaaagtttgaACAgtcgggtgtggtggctcatgcttataatcccagaactttgggaagactgcttgagcccaggagttcaaggcagcagtgagagccatgactgcaccactgtactccagcctgggcgacaaagcagtccccat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106706946 144 - 170124641 aaaagttggagCAgtcaggtgtggtggcttatgcctataatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcactgagagccatgattgcaccacagtactccagcctgggcaacaaagcagtccccat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440415 144 - 171882078 aaaagttggagCAgtcaggtgtggtggcttatgcctataatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcagtgagagccatgattgcaccacagtactccagcctgggcaacaaagcagtccccat
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             124880 144 +    130206 aaaaGTTGGagcagtcaggtgtggtggcttatgcctataatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcagtgagagccatgattgcaccacagtactccagcctgggcaacaaagcagtCCCCAT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21129635 144 -  24206276 aaaagttggagCAgtcaggtgtggtggcttatgcctataatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcagtgagagccatgattgcaccacagtactccagcctgggcaacaaagcagtccccat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22270925 142 + 158406734 gaaagtttgagcagTTgggtatggtggctcatgcctataatctcagcactttgggaagattgcttgagcccaggagttcaaggcatcagtg--agccatgattgccccactgtactccagcctgggcgacaaagcagtccccat
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81381898   0 + 145441459 C
e canFam3.chr3               54434597   0 +  91889043 C

a score=5490.000000
s hg38.chr15_KI270850v1_alt    363069 2 +    430880 ct
s panTro4.chr15              80144935 2 +  99548318 ct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153298 2 +  10928107 ct
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17233207 2 - 121039945 ct
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106707090 2 - 170124641 ct
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440559 2 - 171882078 ct
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             125024 2 +    130206 CT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21129779 2 -  24206276 ct
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22271067 2 + 158406734 tt
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54434597 2 +  91889043 ca
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81381898 0 + 145441459 C

a score=1042299.000000
s hg38.chr15_KI270850v1_alt    363071 303 +    430880 caaaaGTTTGAACAGTACTGATGTGTACAACTAACACAATCTTCCCACCCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCTTGGAGTTCTACACACAGTATAATTCTACCCTCACCCCTACA-ACCC--CCACCACAGACCTCACCTTCCTCCTTATCCAGACATTCCTCAATCTGT--TGTTTCTTCTAGATAAAGA-TTTTCACTACCATTGTAGGATTTCTTCACTAGCTC------------------------CAACTCAATGCAGGCCATACCTGTTAA
s panTro4.chr15              80144937 303 +  99548318 caaaaGTTTGAACAGTACTGATGTGTACAACTAACACAATCTTCCTACCCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCTTGGAGTTCTACACACAGTATAACTCTACCCTCACCCCTACA-ACCC--CCACCACAGACCTCACCTTCCTCCTTATCCAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGA-TTTTCACTACCATTGTAAGATTTCTTCACTAGCTC------------------------CAACTCAATGCAGGCCATACCTGTTAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153300 303 +  10928107 caaaaGTTTGAACAGTACTGATGTATACAACTAACACAATCTTCCCACTCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCTTGGAGTTCTACACACAGTATAACTCTACCCTCACCCCTACA-ACCC--CCACCACAGACCTCACCTTCCTCCTTATCCAGACATTCCTCGATCTGT--TGTTTCTTCCAGATAAAGA-TTTTCACTACCATTGTAGGATTCCTTCACTAGATC------------------------CAACTCAATGCAGGCCATACCTGTTAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17233209 301 - 121039945 caaaaGTTTGAACAGTACTGATGTATACAACTAACACAATCTTCCCACCCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCGTGGAGTTCTACACACAGTATAACTCTACCCTCACCCCTACA-ACCC--CCACCACAGACCTCACCTTCCTCCTTATCCAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGA---TTCACTACCATTGTAGGATTCCTTCACTAGATC------------------------CAACTCAATGCAGGCCATACCTGTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106707092 303 - 170124641 caaaaGTTTGAACGGTACTGATATATACAACTAACGCAATCCTCCCACCCCAAGCTGAAAGAACGCAGGCCTGAACAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCTTGGAGTTTTACACACAGTATAACTCCACCCTCACCCCCACA-ACCC--CCACCACAGACCTCACCTTCCTCCTTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGG-TTTTCCCCATCATTGTAGGATTCCTTCACTAGATC------------------------CAACTCAATGGAGGCCATACCTGTTAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440561 303 - 171882078 caaaaGTTTGAACGGTACTGATATATACAACTAACGCAATCCTCCCACCCCAAGCTGAAAGAACGCAGGCCTGAACAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCTTGGAGTTTTACACACAGTATAACTCCACCCTCACCCCCACA-ACCC--CCACCACAGACCTCACCTTCCTCCTTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGG-TTTTCCCCATCATTGTAGGATTCCTTCACTAGATC------------------------CAACTCAATGGAGGCCATACCTGTTAA
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             125026 303 +    130206 CAAAAGTTTGAATGGTACTGATATACACAACTaacgcaatcctcccaccccaagcTGAAAGAACGCAGGCCTGAACAACAGGTCTGTTAAACTTATTGAGGACCA-TATGGCTACATGAATCCAAGAGCTTGGAGTTTTACACACAGTATAactccaccctcacccccaca-ACCC--CCACCACAGACCTCACCTTCCTCCTTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGG-TTTTCCCCATCATTGTAGGATTCCTTCACTAGATC------------------------CAACTCAATGGAGGCCATACCTGTTAA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21129781 303 -  24206276 caaaaGTTTGAACGGTACTGATATATACAACTAACGCAGTCCTCCCACCCCAAGCTGAAAGAACGCAGGCCTGAGCAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCCTGGAGTTTTATACACAGTATAACTCCACCCTCACCCCCACA-ACCC--CCACCACAGACCTCACCTTCCTCCTTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGG-TTTTCCCCATCATTGTAGGATTCCTTCACTAGATC------------------------CAACTCAATGGAGGCCACACCTGTTAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22271069 290 + 158406734 caaaaGTTTGAAAAGTACTGATGTATACAACTAACAAAGTCTTCCCACCCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCTTTGAGGACCA-AATGGCTATATGAATCCAAGACCCTGGCGTTCTACACACAGTATAACTCTACCCTCACCCGCACACACCCCACCACCACAGACTTCACTTTCCTCCTTATCCAGACATTCC------------------TTCAGATAAAGG-TTTTCACTACCATTGTAGGATTCCTTCACTAGATC------------------------CTAATCAATGGAGGCCATACCTGTTAA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81381898 248 + 145441459 taaaaatctgggcagtactgAGCCATAC------------CTTCCCACCCCA-----AAAGACTTCAGCTATGAGCAAACAGTT------------------CCT-AATAGCTATATGAACCCA-GAGCCTGAAAAGCTACATATGGCATAATTTTAACCCCATTTCCAGA-GGTC------------------------TTTTACTCAGACATTCATTAACCCAGTATGTTTCTTCTACATAAAGGCTTTTTACTACCACTAAAGAATTCTTTAACTAGATT------------------------TAAAACATGAAAGgccaggcatggtga
i mm10.chr7                 C 0 I 10520
s canFam3.chr3               54434599 313 +  91889043 taaaagtctgagCGATACT-ATCTATACAACTTCCACAACCTTCACACCCTGAGCTAACAGACC-CAGGCCCAGGCAGCAGGGCT--------CATTAAGGACAATGACGGCTACACACATCTGGATGCTCCAGAATCTAAACAC-----AACCCGACCTTCCCGCCCAGC-ATCC--CTGCTACAAGCTTCACCCCTGGCCTTATCCAGACAATTTCCATTCTAC--CATTTCCTCCAGAAAAAGG-CTTTCACTACCACTGCAGGATTCCTTCACTAGATCaaaaaaaaaaaaaaaaagaaaaaaaaaaTCAATGGAGCCCATACCCATTAA
i canFam3.chr3              C 0 C 0

a score=61949.000000
s hg38.chr15_KI270850v1_alt    363374 18 +    430880 AACCATTagtgtggcagg
s panTro4.chr15              80145240 18 +  99548318 AACCATTAGTGTGGCAGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153603 18 +  10928107 AACCATTAGTGTGGCAGG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17233510 18 - 121039945 AACCATTAGTGTGGCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106707395 18 - 170124641 AACCATTAGTGTGGCAGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440864 18 - 171882078 AACCATTAGTGTGGCAGG
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             125329 18 +    130206 AACCATTAGTGTGGCAGG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21130084 18 -  24206276 AATCATTAGTGTGGCAGG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22271359 18 + 158406734 AACTGTTAGTCTggccgg
i calJac3.chr6              C 0 I 3801
s canFam3.chr3               54434912 18 +  91889043 AATGCTTAATGTAGCAGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=87647.000000
s hg38.chr15_KI270850v1_alt    363392 32 +    430880 ctggaaaaa--tcaacagctttagatgactgac-a
s panTro4.chr15              80145258 32 +  99548318 CTGGAAAAG--TCAACAGCTTTAGATGACTGAC-A
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153621 32 +  10928107 CTGGAAAAA--TCAACAGCTTTAGATGACTGAT-A
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17233528 33 - 121039945 CTGGAAAAA--TCAACGGCTTTAGATGACTGACAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106707413 32 - 170124641 CTGGAAAAA--TCAACAGCTTTAGACGACTGAC-A
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440882 32 - 171882078 CTGGAAAAA--TCAACAGCTTTAGACGACTGAC-A
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             125347 32 +    130206 CTGGAAAAA--TCAACAGCTTTAGACGACTGAC-A
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21130102 32 -  24206276 CTGGAAAAA--TCAACAGCTTTAGACGACTGAC-A
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54434930 34 +  91889043 CTGGGAAAAATTGAATAGCTTTAAAAGTCTGAT-A
i canFam3.chr3              C 0 I 3378
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I

a score=151094.000000
s hg38.chr15_KI270850v1_alt    363424 63 +    430880 gaccttgctctgctcaccaggtctgccactgtgtctttctgagaatcttttcttctttaaaga
s panTro4.chr15              80145290 63 +  99548318 GACCTTGCTCTGCTCACCAGGTCTgccactgtgtctttctgagcatcttttcttctttaaaga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153653 63 +  10928107 GATCTTGCTCTGCTCACCAGGTCTgccactgtgtctttctgagcatcttttcttctttaaaga
i ponAbe2.chr15_random      C 0 I 105
s nomLeu3.chr6               17233561 61 - 121039945 GACCTTGCTCTGCTCACCAGGTCTGCCAC--TGTctttctgagcatcttttcttctttaaaga
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106707445 63 - 170124641 GACCTTGCTCTGCTCACCAGGTCTgccactgtgtctttctgagcattgtttcttctttagaga
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440914 63 - 171882078 GACCTTGCTCTGCTCACCAGGTCTACCACTGTGTctttctgagcattgtttcttctttagaga
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             125379 63 +    130206 GACCTTGCTCTGCTCACCAGGTCTGCCACTGTGTCTTTCTGAGCATTGTTTCTTCTTTAGAGA
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21130134 63 -  24206276 CACCTTGCTCTGCTCACCAGGTCTGCCACTGTGTCTTTCTGAGCATTGTTTCTTCTTTAGAGA
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54434964 3378 +  91889043 I

a score=827309.000000
s hg38.chr15_KI270850v1_alt    363487 363 +    430880 tgcaacagtagccatcttttaggtgttttgtgaggattaaagaaaataTTTGAggccaggtgcagtggctcaagtctgtaatcccagcactttgggaggctgaggcaggcagatcgcttgaggtcaggagctcaagaccagtctggccaacgtggtgaaaacctgtctctactaaaaatacaaaaaacattagccaggcacagtggcacacgcctgcagtcccagctacttaggaggctgaggcaggagaattgcttgagcccaggaaggggagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacagagctagactcggtctcaaaaaaaaa----aaaaaaaaaaaaaa
s panTro4.chr15              80145353 367 +  99548318 tgcaacagtagccatcttttaggtgttttgtgaggattaaagaaaataTTTGAggccaggtgcagtggctcaagtctgtaatcccagcactttgggaggccgaggcaggcagatcgcttgaggtcaggagttcaagaccagtctggccaacgtggtgaaaacctgtcgctactaaaaatacaaaaaacattagccaggcacagtggcacacgcctgcagtcccggctacttaggaggctgaggcaggagaattgcttgagcccaggaaggggagaggttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagctagactcggtctcaaaaaaaaaaaacaaaaaaaaacaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10153821 350 +  10928107 tgCAACAGTAGCCATCTTTTACGTGTTTTGTGAGGATTAAAGAAAATATTTGAggacaggtgcagtggctcaagtctgtaatcccagcattttgggaggccaaggcaggcagatcacttgaggtgaggagttcaagaccagtctggccaacatggtgaaaccctgtctctactaaaaatacaaaagacattagccaggtacggtggcacacgcctgcactcccagctactcaggaggctgaggcaggagaattgcttgagcccgggaaggggagaggttgcagtgagccgagatcatgccactgcactccagcctgggcaacagagctagactcggtctcaaaaaaaaa-----------------a
i ponAbe2.chr15_random      I 105 C 0
s nomLeu3.chr6               17233622 351 - 121039945 tgcaacagtagccatcttttaggtgttttgtgaggattaaagaaaataTTTGAggccaggtgcagtggctcaagtctgtaatcccagcactgtgggaggccgaggcaggcagatcacttgaggtcaggagttcaagaccagtctggccaacatggtgaaaccctgtctctactaaaaatataaaaaacattagccaggcatggtggcacatgcctgcagccccagctacttaggagactgaggcaggagaattgcttgagcccaggaaggggagaggttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagctagactcggtctcaaaaaaaaa----------------aa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106707508 357 - 170124641 tgcaacactagccaccttttaggtgttttgtgaggattaaagaaaataTCTGAgaccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttcaagaccagtctggccaacatggtgaaa--ctgtctctactaaaaatacaaaaaacattagccaggcacagtggcacacactggcagtcccagctacttgggaggctgaggcagaagaattgcttgagcccgggagggggagaggttgcaatgagccgagattgtgccactgccctccagcctgagcaacagagcgagacgcggtctcaaaaaaaaa-------aaaaga-aaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108440977 358 - 171882078 tgcaacactagccaccttttaggtgttttgtgaggattaaagaaaataTCTGAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttcaagaccagtctggccaacatggtgaaa--ctgtctctactaaaaatacaaaaaacattagccaggcacggtggcacacactggcagtcccaactacttgggaggctgaggcagaagaattgcttgagcccgggagggggagaggttgcaatgagccgagattgtgccactgcactccagcctgagcaacagagctagactcggtctcaaaaaaaaa-------aaaaaagaaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             125442 356 +    130206 TGCAACACTAGCCACCTTTTAGgtgttttgtgaggattaaagaaaatatctgaggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttcaagaccagtttggccaacatggtgaaa--ctgtctctactaaaaatacaaaaaacattagccaggcacggtggcacacactggcagtcccagctacttgggaggctgaagcagaagaattgcttgagtccgggaaggggagaggttgcaatgagccgagattgtgccactgcactccagcctgagcaacagagctagactcggtctcaaaaaaaaa-------aaaag--aaaa
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21130197 358 -  24206276 CGCAACACTAGCCACCTTTTAGGTGTTTTGTGAGGATTAAAGAAAATATCTGAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttgaagaccagtctggccaacatggtgaaa--ctgtctctactaaaaatacaaaaaacactagccaggcacagtggcacacgctggcagtcccagctacttgggaggctgaggcagaagaattgcttgagcccgggacggggaaaggttgcaatgagccgagattgtgccactgcactccagcctgagcaacagagctagacttggtctcaaaaaaaaa-------aaaaaagaaaa
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54434964 3378 +  91889043 I

a score=160456.000000
s hg38.chr15_KI270850v1_alt    363850 53 +    430880 aaaaaaTCATAAACCATGTTCATGTACTGGAAGACTCAACAGCGCTAAAAAGT
s panTro4.chr15              80145720 53 +  99548318 aaaaaATCATAAAccatgttcatgtactggaagactcaacagtgctaaaaagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10154171 53 +  10928107 aaaaaaTCATAAAccatgttcatgtactggaagactcaacagtgctaaaaagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17233973 53 - 121039945 aaaaaaTCATAAACTATGTTCATGTACTGGAAGACTCAACAGTGCTAAAAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106707865 53 - 170124641 aaaaaaTCATAAAccatgttcatgtactggaagactcaacagtgctagaaagt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108441335 53 - 171882078 aaaaaaTCataaaccatgttcatgtactggaagactcaacagtgctaaaaagt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             125798 53 +    130206 aaaaaatcataaaccaTGTTCAGGTACTGGAAGACTCAACAGTGCTAAAAAGT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21130555 53 -  24206276 aaaaaaTCataaaccatgttcatgtactggaagactcaacagtgctaaaaagt
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54438342 53 +  91889043 AAAATGTCATATACCATGTTCATATACTGAAAGATTAAATATTGTCAAAAAGT
i canFam3.chr3              I 3378 I 22
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I

a score=641611.000000
s hg38.chr15_KI270850v1_alt    363903 262 +    430880 GATACCCACAAAATTAATATAcagatgttcctcaactacagtgggg---ttatggtctgataaacccattgtaagttgaaaatattataaacggaaaatgcatttaaatacatctaatttactgcacattatagcttagcctagcataccttaactgtgctcagaaaactgacactagcctacagtagggcaaaataatttaacacaaaacttgttttataataaagtgatgaacacctcatgtaatttattgaatactgtaatg
s panTro4.chr15              80145773 265 +  99548318 gatacccacaaaattaatatacagatgttcctcaactacagtggggttattatggtctgataaacccattgtaagttgaaaatattataaacggaaaatgcatttaaatacatctaatttactgcacattatagcttagcctagcataccttaactgtgctcagaaaactgacactagcctacagtagggcaaaataatttaacacaaaacttgctttataataaagtgataaacacctcatgtaatttattgaatactgtaatg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10154224 262 +  10928107 gataccaacaaaattaatatacaaatgttcctcaactacagtgggg---ttatggtctgataaacccatcgtaaattgaaaatattataaattgaaaatgcctttaaatacatctaatttactgcacattatagcttagcctagcatcccttaactgtgctcagaaaactgacactagcctacagtagggcaaaataatttaacacaaaacttgttttataataaagtgatgaacacctcatgtaatttattgaatactgtaatg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17234026 262 - 121039945 GATACCCACAAAATTAACATAcagatgttcctcaacaacagtgggg---ttatggtctgataaacccactgtaagttgaaaatattataaattgaaaatgcatttaaatacatctaatttactgcacattatagcttagcctagcacaccttaactgtgctcagaaaactgacagtagcctacagtagggcaaaataatttaacacaaaacttgttttataataaagtgatgaacacctcatgtaatttattgaatactgtaatg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106707918 262 - 170124641 gatacccgcaaaattaatatacagatgttcctcaactacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattataaattgaaaatgcatttaaatacatctaatttactgcacattatagcttagcctagcctaccataaccgtgctcagaaaactgacactagcctacagtaggacaaaataatttaacacaaaacctgtattataataaagtgatgaacacctcatgtaatttattgaataccgtaatg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108441388 262 - 171882078 gatacccgcaaaattaatatacagatgttcctcaactacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattataaattgaaaatgcatttaaatacatctaatttactgcacattatagcttagcctagcctaccataaccgtgctcagaaaactgacactagcctacagtaggacaaaataatttaacacaaaacctgtattataataaagtgatgaacacctcatgtaatttattgaataccgtaatg
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             125851 262 +    130206 GATACCCGCAAAATTAATATACAGATGTTCCTCAACTACAGTGGGG---TTGTGgtctgataaacccattgtaaattgaaaatattataaattgaaaatgcatttaaatacaTCTAATTTACTGCACattatagcttagcctagcctaccatAACCGTGCTCAGAAAACTGACACTAGCCTACAGTAGGACAAAATAATTTAACACAAAACCTGTATTATAATAAAGTGATGAACacctcatgtaatttattgaataccgtaatg
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21130608 262 -  24206276 gatacccgcaaaattaatatacagaggttcctcaactacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattatgaattgaaaatgcatttaaatacatctaatttactgcacattatagcttagcctagcctaccttaaccgtgctcagaaaactgacactagcctacagtagggcaaaataatttaacacaaaacctgtattataatgaagtgatgaacacctcatgtaatttattgaataccgtaatg
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54438395  22 +  91889043 I

a score=411801.000000
s hg38.chr15_KI270850v1_alt    364165 181 +    430880 aaaataaaaacagaaaggtcgtatggatactcaaagtacaatttcaactgaatgcgt--at-cattttcacaccatcatcatgtc-aaaaaccaaagttgaaccaacctaagtctggggccatctgCACATCTGTGTAATCCC---AATATA-CCAGACTTAAAgcaattcattggggaaaaacttttt
s panTro4.chr15              80146038 181 +  99548318 aaaataaaaacagaaaggtcgtatggataatcaaggtacaatttcaactgaatgcgt--at-cattttcacaccatcatcatgtc-aaaaacctaagttgaaccatcctaagtctggggccatctgcacatctgtgtaatccc---aatATA-CCAGACTTAAAgcaattcattggggaaaaacttttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10154486 182 +  10928107 aaaataaaaacagaaaggtcatatggatactcaaagtacagtttcaactgaatgcgt--at-cattttcacaccatcatcatgtcaaaaaacctaagttgaaccaccctaagtctggggccatctgcacatctgtgtaatccc---aatACA-CCAGACTTAAAgcaattcattggggaaaaacttttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17234288 177 - 121039945 aaaataaaaacaggaaggtcatatggatactcaaagtacagttgcaactgaatgcat--at-cattttcacaccatcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgCACATCTGTGTAATCTC---AATATA-CCAGACTT-----aattcactggggaaaaacttttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106708180 185 - 170124641 aaaataaaaacagaaaggtcgtatggacactcaaagtacagtttcaactgaatgtgttgatatgcattcacaccatcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgcacattggtgtaatccc---aatATA-CCAGACTTACAgcaattcactggggaaaagcttttt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108441650 185 - 171882078 aaaataaaaacagaaaggtcgtatggatactcaaagtacagtttcaactgaatgtgttgatatgcattcacaccatcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgcacattggtgtaatccc---aatata-ccagacttacagcaattcattggggaaaagcttttt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             126113 185 +    130206 aaaataaaaacagaaaggtcGTATGGATACTCAAAGTACAGTTTCAACTGAATGTGTTGATATGCATTCACACCATCATCATGTCAAAAAACCTAAGTTGAACCATCCTAAGTCTGGGACCATCTGCACATCGGTGTAATCCC---AATATA-CCAGACTTACAGCAATTCATTGGGGAAAagcttttt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21130870 185 -  24206276 aaaataaaaacagaaaggtcgtatggatactcaaagtacagtttcaactgaatgtgttgatacgcattcacaccatcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatatgcatatcggtgtaatccc---aatATA-CCAGACTTACAgcaattcattggggaaaagcttttt
i chlSab2.chr29             C 0 I 2560
s canFam3.chr3               54438417 119 +  91889043 aaaaaaaaaaaaaaaaaGTTG-ATAGCTATCCA----------CCAAAGCAATCCAC--AT--------------------GGTCAA-------------------------------------TACAAGTCAATACAAGCCCAATAATATATCTGGTCTTCAAgtaattcagtggagaaagacccttt
i canFam3.chr3              I 22 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I

a score=420502.000000
s hg38.chr15_KI270850v1_alt    364346 218 +    430880 aacaaatggcactggaa-cacca------tatggggaggagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactacaaagcctctctaaga-------acctatctttgtaacttggtaggggagggggagtacatagaagcaagggtttctttatgtagagtacagaaagcaatgatcatggagaaa
s panTro4.chr15              80146219 217 +  99548318 aacaaatggcactggaa-cacca------tat-gggaggagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactacaaagcctctctaaga-------acctatctttgtaacttggtaggggagagggagtacatagaagcaagggtttctttatgtagagtacagaaagcaatgattatggagaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10154668 218 +  10928107 aacaaatggcactggaa-cacca------tatggggacgagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactataaagcttctctaaga-------acctatctttgtaacttggtaggggagagggagtgcatagaagcaagggtttctttatgtagagtacagaaagcaatgatcatggagaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17234465 214 - 121039945 aataaatggcactggaa-cacca------tatggggaggagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactataaagcttctctaaga-------acctatctttgtaacttggtaggggagagggagtgcatagaagcaaggg----tttatgtagagtacagaaagcaatgatcatggagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106708365 213 - 170124641 aacaaatggtgctgaaa-cacca------tatggggaggagggaataaactctgac-------------ctatacacaaac-ttaatttagtagatatcagagacat--aaaagtgaaaactaaatataaactataaagcttctctaaga-----------agctttatgacttggtaggggagagagaatgcatagaaacaaggatttctttatgtagagtacagaaagcaatgatcatggagaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108441835 213 - 171882078 aacaaatggtgctgaaa-cacca------tatggggaggagggaataaactctgac-------------ctatacacaaac-ttaatttagtagatatcagagacat--aaaagtgaaaactaaatataaactataaagcttctctaaga-----------agctttatgacttggtaggggagagagaatgcatagaaacaaggatttctttatgtagagtacagaaagcaatgatcatggagaaa
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             126298 217 +    130206 aacaaatggtgctgaaa-caccA------TATGGGGAGGAGGGAATAAACTCTGAC-------------CTATACACAAAC-TTAATTTAGTAGATATCAGAGACAT--AAAAGTGAAAactaaatataaactataaagcTTCTCTAAGA-------ACCTATCTTTATGACTTGGTAGGGGAGAGGGAGTGCATAGAAACAAGGATTTCTTTATGTAGAGTACAGAAAGCAATGATCATGGAGAAA
i papAnu2.JH685126          C 0 C 0
s canFam3.chr3               54438536 224 +  91889043 aacacacagtactggaaccaccacagatccacagggagaa--aaataaatcttgaccccgtacctcacaccatatacaagcattaaatcaatatggatcagaggctttaaaaagttaaaac---------------aagcttctctaagaaactataaactatctttgtgacttggggtgggag---gagtgcacaga--cgaaggtttc-ctatggaggatacagaaagcaatgatcattagaaaa
i canFam3.chr3              C 0 I 3361
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=2975374.000000
s hg38.chr15_KI270850v1_alt    364564 1691 +    430880 gttgataagctgaccttatcacaacgaaaaacttctgctcatcaagataccactaagaaaataattacgcaagccacaatatgtgagaaaatacccacaaccatatctgacaaatcagtaaaagaaatcttaactgaaaag-taacgaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacaaggattatataaatggccaataagaacttcaaaaagtgctcaaaatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatttaaaagactgtaccacatcttgccaacatttgatgttgtcaatcaaagcttcattaccgtaaatggtacatccaccttgtacttatgaaaacgcttatatattttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaact-aacacatattatcttatgacccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtcatagcagctttattcataatcacccaaacgtggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattattcagcaataaaaaggaataatacaggcaacaataagataattatggtgagtggaaaaagccgtacataagttacatatgtatataattccacttatttgaatttttagagcagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagtaggcaggtagattaggaaggggtacaaggaaagtagctgaggtgatgctaacagtgtgtatattttgatgagagtgaggatacatcagtcagaatggatctaatgacacatttagaatttgtgctcttcactgcatataaattttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatggtgaaggattttggggtaaactgtagcaatgtctacaattt---------------------------------------------------------------aaagatatgtgataaggcaaatatgacaagatgttcactgttcaatctaggtggtattacaggtgttcactttgtaattcttttagcttttatgtatgcttgaaaatgttactaaaatgttgagaaaaaaat-aaagtcagactttttctgaaaaaatgaaagtctgactgaactaattgatttgacaataaaaactgactccaggctgggtgtggtggctcatacgtgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaaccccgtctgtaataaaaatacaaaaaatcagccgggcatggtgggtgcacacttgtagtcacagctacttgggtggctgaggtggaaggatcgcttgagcctaggaggcagaggatgcagtgagctgagaccacgccactgcactccagcctgggtgacagagtgagaccccgtctccaaaaacag----gactccattaaatgaggcattatagtagaaatttttttctgtaaataaagttaaatctataggcccatggctttgacaaaacatacttaaagcaaatggtaagattaaatcattttt
s panTro4.chr15              80146436 1695 +  99548318 gttgataagctgaccttatcacaacgaaaaacttctgctcatcaagataccactaaaaaaataattacacaagccacaatatgtgagaaaatacccacaaccatatctgacaaatcagtaaaagaaatcttaactgaaaag-taacaaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacaaggattatataaatggccaataagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagttggacactactgcacacctactagatggctaaaatttaaaagactgtaccacatcttgccaacatttgatgttgtcaatcaaagcttcgttaccgtaaatggtacatccaccttgtacttatgaaaacgcttatatatgttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaact-aacacatattatcttatgacccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtcatagcagctttattcataatcacccaaacgtggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattattcagcaataaaaaggaataatacaggcaacaataagataattatggtgagtggaaaaagccgttcataagttacatatgtatataattccacttatttgaatttttagagcagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagtaggcaggtagattaggaaggggtacaaggaaagtagctgaggtgatgctaacagtgtgtatattttgatgagagtgaggatacatcagtcagaatggatctaatgacacatttagaatttgtgctcctcactgcatataaattttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatggtgaaggattttggggtaaactgtagcaatgtctacaattt---------------------------------------------------------------aaagatatgtgataaggcaaatatgacaagatgttcactgttcaatctaggtggtattacaggtgttcactttgtaattcttttagcttttatgtatgcttgaaaatgttactaaaatgttgagaaaaaaat-aaagtcagactttttctgaaaaaatgaaagtctgactgaactaattgatttgacaataagaactgactccaggctgggtgtggtggctcacacgtgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaaccccatctgtaataaaaatacaaaaaatcagccgggcatggtgggtgcacacttgtagtcacagctacttgggtggctgaggtggaaggatcgcttgagcctaggaggcggaggatgcagtgagctgagatcatgccactgcactccagcctgggtgacagagtgagaccctgtctccaaaaacagaactgactccattaaatgaggcattatagtagaaatttttttctgtaaataaagttaaatctataggcccatggctttgacaaaacatacttaaagcaaatggtaagattaaatcattttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10154886 1693 +  10928107 gctgataagctgaccttatcacaacgaaaaacttctgctcatcaagataccactaagaaaataattacgcaagccacaatatgtgagaaaatacccacaaccatatctgacaaatcagtaaaagaaatcttaactgaaaag-taacaaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacaaggattatataaatggccaataagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaattaaaaagactgtaccacatcttgccaacatttgatgttgtcaatcaacgcttcattaccgtaaatggtacatccaccttgtacttatgaaaacgcttatgtattttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaatt-aacatatattatcttatgacccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtcatagcagctttattcataatcacccaagcgtggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattactcagcaataaaaagg---aatacaggcaacagtaaggtaattatggtgagtgaaaaaagccgtacataagttacatatgtatataattccacttatttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagtaggcgggtagattaggaaggggtacaaggaaagtagctgaggtgacgctaacagtgtctatattttgatgagagtgaggacacatcagtcagaatggatctaatgacacatttagaatttgtgcacttcactgcatgtaaattttacctcaaaaaagttataaacaaacatagtattgaatactagttaatgatatgcatgctgaaggattttggggtaaattgtagcaatctctacaattt---------------------------------------------------------------aaagatatgtgataaggcaaatatgacaagatgttcactgttcaatctaggtggtattacaggtgttcactttgtaattcttttagcttttatgtatgcttgaaaatgttagtaaaatgttgagaaaaaaataaaagtcagactttttctgaaaaaatgaaagtctgactgaactaattggtttgacaataagaactgactccaggctgggtgtggtggctcatacgtgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaaccccagctgtaataaaaatacaaaaaatcagccgggcatggtgggtgcacacctgtagtcacagccacttgggtggctgaggtgggaggattgcttgagcctaggaggcggaggatgcagtgagctgagatcatgccactgcactccagcctgggtgacagagtgagaccccgtctccaaaaacagaactgactccattaaatgaggtattatagtagacatttttttctgtaaataaagttaaatctataggcccatggttttgacaaaacatacttaaagcaaatggtaagataaaatcattttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17234679 1691 - 121039945 attggtaagctgaccttatcacaacaaaaaacttctgctcatcaagataccactaagaaaataattgggcaagccacaatatgtgagaaaatacgcacaatcgtatctgacaaatcagtaaaagaaatcttaattgaaaagttaacaaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacgaggattatataaatggccaataagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttgaaaccacagtgagacactactgcacacctactagatggctaaaattaaaaagactgtaccacatgttgccaacattcgatgttgtcaatcaaagcttcattactataaatggtacatccaccttgtacttatgaaaacgcttatatattttcttcctcttcaatgggagaaaagatacgtccatgttgaaaaatggtctgcccatttcttacacaagt-aacacatattatcctatgacccagaaattctactcttaggaattcaactaagaggagtaaaagtgtatgtctaataagacacctgtgcaagaatagttagagcagctttattcataatcacccaaacgtggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattactcagcaataaaaaggaacaatacaggcaaca-----attattatggtgagtgaaaaaagccgtacataagttacatatgtatataattccacttatttgaatttttagaacagatgaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagcaggggggtagattaggaaggggtacaaggaaagtagctgagatgatgctaacagtgtgtatattttgatgagagtggggatacatcagtcagaatggatctaatgacacatttagaatttgtgcacttcactgcatataaattttacctcaaaaaagttataaacaaatataatattgaatactagttaatgatatgcatgctgaaggattttggggtaaattgtaccaatgtctacaattt---------------------------------------------------------------aaagatatgagataagacaaatatgacaaaacattcattgttcaatctaggtggtattacaggtgttcactttgtaattcttttaGAttttatgtatgcttgaaaatgttaataaaatgttgagaaaaaaat-aaagttagactttttctgaaaaaatgaaagtctgactgaactaattggtttgacaataagaactgacttcaggctgggtgtagtggctcatacgtgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaaccctatctgtaataaaaatacaaaaaatcagcaaggcatggtgggtgcgcacctctagtcacagctacttgggtggctgaggtgggaggatcgcttgagcctaggaggtggaggatgcagtgagctgagatcatgccactgcactccagcctgggtgacagagtgagaccctgtctccaaaaacagaactgactccattaaatgaggtattatagtagacatttttttctgtaaataaagttaaatctataggcccatggttttgacaaaacatacttaaagcaaatggtaagataaaatcattttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106708578 1703 - 170124641 gttgataagctgaccttatcacaataaaaaacttctgctcatcaagataccattaagaaaataa----gcaagccacaaactatgagaaaatatccacaaccatatctgacaaatcagtaaaagacatcttaactgagaag-taacaaaatctcaattgttaaaagtcacaaaatctgaaaagcacttcacaaggattatataaatggccaataagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatt--aaagactgtaccacatcttgccaacatttgatgttg----tcaaagcttcattaccataaatggtacatccacctggtacttatgaaaacacttatatattttcttccttttcaatgggagaaaaggtatatccactttgaaaaatggtctgcccatttcttacacaactaaacacatattatcctacgatccagaaattctactcctaggaattcaactaa---gagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtaatagcaactttattcataatcaaccaaacctgcattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccataccattactcagcaataaaaagg-ataatacaggcaaca---agataattgtggtgagtgaaaaacgccgtacataaattacatatgtatataattccacttatttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcagaaagcaagggggtagattaggaaggggtacaagggaagtagctgaggtgatgctaacagtgtgtctattttgatgagagtggggatacatcagtcagaatggatctaatgacacatttcgaatttgtgcacttcactgcatataaagtttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatgctgaaggattttggggtaaactgtaccaatgtctacaatttactttgaaacaaatcgtaaaaataagatgtaatggttaagtggttagggggctaaataaatgaaaagatatgtgataaggcaaatatgacaaaatgttcattgttcaatctaggtggcattacaggtgttcactttataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgagaaaaaaat-aaagtcagactttttctggaaaaa-aaaagtctgactgaactaattagtctgacaataagaactgactccaggctgggtgtggtggctcatacctgtagtcccagcactttgtgaggccaatgcaggtggacagcttgagccaatgagtttgagaccagcatgggcaacatggcaaaaccccatctctaataaaaatacaaaaaattagccgggcatggt-ggtgtgcacctgtagtcacagctaattgggtggctgaggtgggaggatcacttaagcctaggag---------------------------------gcactccagcctaggtgacagagtgagaccctgtctccaaaaacagaactgactccattaaatgaggtattatagtagacatttttttct----ataaagttaaatctataggtccatggttttgacaaaatatacttaaagcaaatggtaagataaaatcattttt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108442048 1706 - 171882078 gttgataagctgaccttatcacaataaaaaacttctgctcatcaagataccattaagaaaataa----gcaagccacaaactatgagaaaatatccacaaccatatctgacaaatcagtaaaagacatcttaactgagaag-taacaaaatctcaattgttaaaagtcacaaaatctgaaaagcacttcacaaggattatataaatggccaataagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatt--aaagactgtaccacatcttgccaacatttgatgttg----tcaaagcttcattaccataaatggtacatccacctggtacttatgaaaacacttatatattttcttccttttcaatgggagaaaaggtatatccactttgaaaaatggtctgcccatttcttacacaactaaacacatattatcctacgatccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtaatagcaactttattcataatcaaccaaacctggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccataccattactcagcaataaaaagg-ataatacaggcaaca---agataattgtggtgagtgaaaaacgtcgtacataaattacatatgtatataattccacttatttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcagaaagcaagggggtagattaggaaggggtacaagggaagtagctgaggtgatgctaacagtgtgtctattttgacgagagtggggatacatcagtcagaatggatctaatgacacatttcgaatttgtgcacttcactgcatataaagtttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatgctgaaggattttggggtaaactgtaccaatgtctacaatttactttgaaacaaatcgtaaaaataagatgtaatggttaagtggttagggggctaaataaatgaaaagatatgtgataaggcaaatatgacaaaatgttcattgttcaatctaggtggcattacaggtgttcactttataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgagaaaaaaat-aaagtcagactttttctggaaaaa-aaaagtctgactgaactaattggtctgacaataagaactgactccaggctgggtgtggtggctcatacctgtagtcccagcactttgtgaggccaatgcaggtggacagcttgagccaatgagtttgagaccagcatgggcaacatggcaaaaccccatctctaataaaaatacaaaaaattagccgggcatggt-ggtgtgcacctgtagtcacagctaattgggtggctgaggtgggaggatcacttaagcctaggag---------------------------------gcactccagcctaggtgacagagtgagaccctgtctccaaaaacagaactgattccattaaatgaggtattatagtagacattttttcct----ataaagttaaatctataggtccatggttttgacaaaatatacttaaagcaaatggtaagataaaatcattttt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             126515 1733 +    130206 GTTGATAAGCTGAccttatcacaataaaaaacttCTGCTCATCaagataccattaagaaaataa----gcAAGCCACAAACTATGAGAAAATATCCACAACCATATCTGACAAATCAGTAAAAGAAATCTTAACTGAAAAG-TAACAAAATCTCAATTGTTAAAAGTCACAAAATCTGAAAAGCACTTCACAAGGattatataaatggccaataagaacTTCAAAAAgcactcaacatcattagtcaaaGAAATCcaagttaaaaccacagtgagacactaCTGCACACCTACTagatggctaaaatt--aaagactGTACCACATCTTGCCAACATTTGATGTTG----TCAAAGCTTCATTACCATAAATGGTACATCCACCTGGTACTTATGAAAACACttacatattttcttccttttcaatggGAGAAAAGGTACATCCACTTTGAAAAATGGTCTGCCCATTTCTTACACAACTAAACACATATTATCCTACGatccagaaattctactcctaggaatTCAACTAAGAGGAGTAAAAGTGTATGTCTAATAAAACACCTGTGCAAGAATAGtaatagcaactttattcataatcaacCAAATCTGGATTCAGTCCATGTGAGAATCAACAGAACAAAATGTAGTACATGCATATACCATAccattactcagcaataaaaaggaataatacaGGCAACA---AGATGATTGTGGTGAGTGAAAAACGCCGTACataaattacatatgtatataattccacttatttgaatttttagaacAGACAAAACTAATAAATGGTGaaaaaaaTCAGGTGGTTGCCTCTGGCAGAAAGCAAGGGGGTAGATTAGGAAGGGGTACAAGGGAAGTAGCTGAGGTGATGCTAACAGTGTGTCTATTTTGATGAGAGTGGGGATACATCAGTCAGAATGGATCTAATGACACATTTCGAATTTGTGCACTTCACTGCATATAAAGTTTACCTTAAAAGAgttataaaaaaaga-------gaatactaGTTAATGATATGCATGCTGAAGGATTTTGGGGTAAACTGTACCAATGTCTACAATTTACTTTGAAACAAATCGTAAAAATAAGATGTAATGGTTAAGTGGTTAGGgggctaaataaatgaaaagatatgtgATGAGgcaaatatgacaaaatgttcATTGTTCAATCTAGGTGGCATTACAAGTGTTTACTTTataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgagaaaaaaat-aaagtcagactttttctggaaaaa-aaaagtctgactgAACTAATTGGTCTGACAATAAGAACCgactccaggctgggtgtggtggctcatacctgtagtcccagcactttgtaaggccaATGCAGGTGGACAGCTTGAGCcaatgagtttgagaccagcatgggcaacatggcaaaaccccatctctaataaaaatacaaaaaattagccgggcatggt-ggtgtgcacctgtagtcacagctaattgggtggctgaggtgggaggatcacttaagcctaggaggcagaggatgcactgagctgagatcatgccactgcactccagcctaggtgacagagtgagaccctgtctccaaaaacagaaCTGACTCCATTAAATGAGGTATTATAgtagacatttttttct----ataaagttaAATCTATAGGTCCATGGTTTTGACAAAATATACTTAAAGCAAATGGTaagataaaatcattttt
i papAnu2.JH685126          C 0 I 307
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=12740.000000
s hg38.chr15_KI270850v1_alt    366255 5 +    430880 aaata
s panTro4.chr15              80148131 5 +  99548318 aaata
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10156579 5 +  10928107 aaata
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17236370 5 - 121039945 aaata
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106710281 5 - 170124641 aaata
i rheMac3.chr7              C 0 I 309
s macFas5.chr7              108443754 5 - 171882078 aaata
i macFas5.chr7              C 0 I 310
s papAnu2.JH685126             128555 5 +    130206 aaata
i papAnu2.JH685126          I 307 C 0
s chlSab2.chr29              21133615 5 -  24206276 aaata
i chlSab2.chr29             I 2560 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=124525.000000
s hg38.chr15_KI270850v1_alt    366260 51 +    430880 gcatgttggcaaaggtgtgttTTGTTTTGTTTTTGCagctgaggctatagg
s panTro4.chr15              80148136 51 +  99548318 gcatgttggcaaaggtgtgttTTGTTTTGTTTTTGCagttgaggctatagg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10156584 51 +  10928107 gcatgttggcaaaggtgtgttTTGTTTTGTTTTCGCagctgaggctatagg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17236375 51 - 121039945 gcatgttggcaaaggtgtGCTTTGTTTTGTTTTTGCAGCTGATGCTACAGG
i nomLeu3.chr6              C 0 M 100
s rheMac3.chr7              106710595 51 - 170124641 gcatgttggcaaaggtgtGCTTTGTTTTGCTTTTGCagctgaggctatagg
i rheMac3.chr7              I 309 C 0
s macFas5.chr7              108444069 51 - 171882078 gcatgttggcaaaggtatGCTTTGTTTGGCTTCTGCagctgaggctatagg
i macFas5.chr7              I 310 C 0
s papAnu2.JH685126             128560 51 +    130206 gcatgttgGCAAAGGtgtgctttgttttgcttttgcagcTGAGGCTATAGG
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21133620 51 -  24206276 gcatgttggcaaaggtgtGCTTTGTTTTGCTTTTGCagctgaggctatagg
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=49749.000000
s hg38.chr15_KI270850v1_alt    366311 28 +    430880 cacaccactatgtccaactatttttatt
s panTro4.chr15              80148187 28 +  99548318 cacaccactatgtccaactatttttatt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10156635 28 +  10928107 cacaccactatgtccaactatttttatt
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106710646 28 - 170124641 cacaccactatgtccaagtattttcatt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108444120 28 - 171882078 cacaccactatgtccaagtattttcatt
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             128611 28 +    130206 CACACCACTATGTCGaagtattttcatt
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21133671 28 -  24206276 cacaccactatgtccaagtattttcatt
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I
e nomLeu3.chr6               17236426 100 - 121039945 M

a score=2800.000000
s hg38.chr15_KI270850v1_alt    366339 1 +    430880 g
s panTro4.chr15              80148215 1 +  99548318 g
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10156663 1 +  10928107 g
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17236526 1 - 121039945 G
i nomLeu3.chr6              M 100 C 0
s rheMac3.chr7              106710674 1 - 170124641 g
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108444148 1 - 171882078 g
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             128639 1 +    130206 g
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21133699 1 -  24206276 g
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=1743793.000000
s hg38.chr15_KI270850v1_alt    366340 608 +    430880 ttttgtagagaca--gagtctcactatgttggccaggctggtctcgaactcctgggctcaagggatcctcccaccccaggctctcaaagtgctgggattacatgtgtgagccactgtgcccgacTGCAAAGGTGTATTTTTAAACTAACTT--AAAAAATTTTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCTATCTTTTAAGTATACTGAATTAAGGTGTGTCTAAGTGAAGGAC----AGACATAGTAGTAATCTCAAATCTG----TTTTT----ATT--------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcaggcgggaatgcagtggcataaacacaattcactgcagactagacttccaggtttaagagattttcctacctcagcctcccaagtagctgggactacaggtgcatgccaccatacctggctaa----------ttttttt-gggaagta-tatttttgtaaagacagggtcttgctatgttgccc-------aagctgttctcagactcttgagctcaagtgatctgcctgccccagcctcacaaagtgctgggattacaggtgtgagccactgcattcagccTCATCTGAAA----AATATAGCATT
s panTro4.chr15              80148216 603 +  99548318 ttttgtagagaca--gagtctcactatgttggccaggctggtctcgaactcctgggctcaagggatcctcccacctcaggctctcaaagtgctgggattacatgtgtgagctactgtgcctgacTGCAAAGGTGtatttttaaactaactt--aaaatttttttttttaatttCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTAAGTATACTGAATTAAGGTGTGTCTAAGTGAAGGAC----AGACATAGTAGTAATCTCAAATCTG----TTTTT----ATT--------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcgggcggcaatgcagtggcataaacacaattcactgcagactagacttccaggtttaagagattttcctacctcagcctcccaagtagctgggactacaggtgcatgccaccatacctggctaa----------ttttttg-ggggggta-tatttttgtaaagacagggtcttgctatgttgccc-------aggctgttctcagactcttgagctcaagtgatctgcctgccccagcctcacaaagtgctgggattacaggtgtgagc-----caTTCAGCCTCATCTGAAA----AATATAGCATT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10156664 610 +  10928107 ttttgtagagaca--gggtctcactatgttggccaggctggtctcgaactcctgggctcaagggatcctcccacttcaggctctcaaagtgctgggattacaggtgtaagccactgtgcctgactGCAAAGGTGtatttttaaactaactt---aaatttttttttttaatttCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTAAGTATACTGAGTTAAGGTGTGTCTAAGTGAGGGAC----AGACATAGTAGTAATCTCAAATCTGCtttttttt----att--------ttttgagatggatttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacacaattcactgcagactacacttccaggtttaacagattttcctacctcagcctcccaagtagctgggactacaggtgcatgccaccatacc-agctaa----------ttttttt-tgggggta-tatttttgtaaagacagggtcttgctatgtttccc-------aggctgttctcagactcttgagctcaagtgatctgcctgccccagcctcacaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA----AATATAGCATT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17236527 615 - 121039945 ttttgtagagaca--gggtctcactatgttggccaggctggtctcaaactcctgggctcaagggatcctcccacctcaggctctcaaagtgctgggattacaggtgtgagccactgtgcctgacTGCAAAAGTGTATTTTTAAACTAACTTAAAAAAAAATTTTGTTAAATTTCCTACAAATGTTGCACAAGAACTATTTTAAGTTTTCTCAGTGTTTTAAGTATACTGAGTTAAGGTGTGGCTAAGTGAAGGAC----AGACATAGTAGTAATCTCAAATCTGCtttttttt----att--------ttttgagatggatttttagaaacagaatcttgttctgtcaggctggaatgcagtggcataaacacaattcactgcagactacacttccaggtttaagtgattctcctacctcagcctcccaagtagctgggactacaggtgcatgccaccatacccagctaa----------tttttttgggggggta-tatttttgtaaagacagggtcttgctatgttgccc-------aagctgttctcagactcttgagctcaagtgatctgcctgccccagcctcccaaaatgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA----AATATGGCATT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106710675 608 - 170124641 ttttgtacagaca--gggtctcactatgttacccaggttggtctcgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgaaccactgtgcctgacTGCAAAGGtatatttt-----taactt---aaaattttttttttaatttCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGACATAGTAATAATCTCAAATCTGC---TTTTTAAAAATT--------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctcagcctcccaagtagctgggactacaggtgcatgccaccatacccagctag---------tttttttg-ggggggta-tatttttgtaaagacgaggtcttgctatgttgccc-------aagctattctcaggctcgtgagctcaagtgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA----AATATAGCACT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108444149 608 - 171882078 ttttgtacagaca--gggtctcactatgttacccaggttggtctcgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgaaccactgtgcctgacTGCAAAGGTATATTTT-----TAACTT---AAAATTTTTTTTTAAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGACATAGTAATAATCTCAAATCTGC---TTTTTAAAAATT--------TTTTGAGATGGAtttttagaaacagaatcttgctctatcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctcagcctcccaagtagctgggactacaggtgcatgccaccatacccagctag---------tttttttg-ggggggta-tatttttgtaaagacgaggtcttgctatgttgccc-------aagctattctcaggctcttgagctcaagtgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA----AATATAGCACT
i macFas5.chr7              C 0 C 0
s papAnu2.JH685126             128640 605 +    130206 ttttgtacagaca--gggtctcactatgttacccaggttggtctcgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgaaccactgtgcctgactgcaaaggtatatttt-----taactt---aaaattttttttt-aatttcctacaAATGTTGcacaaaaactattttaagtttTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGACATAGTAATAATCtcaaatctgc---tttttaaaaatt--------ttttgagatggatttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacaCAATTCACTGCAGACTAGACTTCCAGGcttcagtgattctcctacctcagcctcccaagtagctgggaa-acaggtgcatgccaccatacccagctag----------ttttttg-ggggggta-tatttttgtaaagacgaggtcttgctatgttgccc-------aagctattCTCAggctcttgagctcaagtgatctgcctgccccaggctcccaaagtgctgggattacaggcgtgagccactgcattcagcctcatctgaaa----aatatagCACT
i papAnu2.JH685126          C 0 C 0
s chlSab2.chr29              21133700 609 -  24206276 ttttgtacaggcaccgggtctcactatgttgcccaggttggtctcgaactcctgggctcaagggatcctcccacatcagcctctcaaagtgctgggattacaggcgtgaaccactgtgcctgacTGCAAAGGTATATTTT-----TAACTT---AAAATTTTTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTCTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAAGAC----AGACATAGTAATAATCTCATATCTGC---TTTTTAAAAATT--------TTTTAAGATGGAtttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctcagcctcccaagtagctgggactacaggtgcatgccaccatacccagctag----------ttttttg-ggggggta-tatttttgtaaagacaaggtcttgctatgttgccc-------aagctattctcaggctcttgagctcaagtgatctgcctgcttcagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA----AATATAGCACT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22275178 639 + 158406734 ttttgtagagaca--gggtctcactatgttgcccaggctagtctcgacctcctgggctcaagggatcctcccacctcagcctctcaaaatgctgcaattacaggtgtgagccactgT-CCTGACTGCAAAGGTGTATTTTTAAACTAACTT---AAAA----TTCTTAAATTTCCTACTAATGTTGCACAAAAAGTATTATAAGTTTTCTCAATCCATTAAGTATACTGAGTTAAGATGTATCTAAGTGAAGGACAAAGAGACTTAGTAGTAATGTCAAATCTGTGT-TTTTT----GTTTGATTTGATTTTGAGACAAACttttagaaacagaattttgctctggcaggctggaatgcagtggaataaacacagctcactgcagactagacttccaggcttaagtgactctcctacctcaacctcccaagtagctgggactgcaggtgcataccaccatacctggctttttttgtttgtttttttt-ttttggtattattcttgtagagacagggtcttgctatgttgcccaacatataagccactctcagactcttgagctcaaatgatctgcctgctccagcctcccaaagggctgggattacaggcgtgagccactgcactcagcctcatctgaaatcctgataaagcatt
i calJac3.chr6              I 3801 I 1868
e mm10.chr7                  81382146 10520 + 145441459 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=39228.000000
s hg38.chr15_KI270850v1_alt    366948 15 +    430880 GATAAAGCTATATTG
s panTro4.chr15              80148819 15 +  99548318 GATAAAGCTATATTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10157274 15 +  10928107 GATAAAGCTATATTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17237142 15 - 121039945 GATAAAGCTATATTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106711283 15 - 170124641 GATAAAGCTATAttg
i rheMac3.chr7              C 0 I 1459
s macFas5.chr7              108444757 15 - 171882078 GATAAAGCTATAttg
i macFas5.chr7              C 0 I 1456
s papAnu2.JH685126             129245 15 +    130206 GATAAAGCTATATTG
i papAnu2.JH685126          C 0 N 0
s chlSab2.chr29              21134309 15 -  24206276 GATAAAGCTATAttg
i chlSab2.chr29             C 0 I 1449
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=622523.000000
s hg38.chr15_KI270850v1_alt    366963 1219 +    430880 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtca--------------------------------------------------------------------------ggagatcgagaccatcctggctaacacggtgaaaccccgtctctaataaaaatacaaaaaattagccgggcatggtggcaggtgcctgcagtcccagctaatcgggaggctgaggcagaagaatggcgtgaacccaggaggcggagtttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaataaaaaataaaaaaGCTACAttgataaagcattattggtatagttaggaaactgagtaattccatgtctggtatgactaggtaaaacgtcttttcacaaattagctggttttccgttctttcttttcaaccaatatgaaggaggaatgaacgcaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaact-aaatcaaag-aattgtatgaactagttcattccccatctactta-ttttatgtgaacaagtttactcagggc--acaaacctatggaaacaaaatgtatatatacagtgttgaaaattccaagttggtgggcacagtggttcacacctgtaatcccagcactttgggaagccgaggcaggtggatcactggagttcaggagctcgagaccagacatggcgaaaccccatctcaactaaaaaatacaaaaattagccgggtgtggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacaaagcaagattctgtctcaaaaaaacaaacaaacaaaaaaaa---------ccccaagtcattccagcaataagtcagtcatacaaaattacatgtttttttgttttgttttgtttttt-----gagagagtctcactctgtcgtcctgactgcaatggcaaaatcttggcttactacaacctccacgtcctaggctcagaaaattctcctgctccagcctcccgagtagctgggattatacacatgcaccaccacgcccagctaatttttgaac-tttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcatgtgatctacccacctcggc
s panTro4.chr15              80148834 1224 +  99548318 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtca--------------------------------------------------------------------------ggagatcgagaccatcctggctaacacggtgaaaccccatctctaataaaaatacaaaaaattagccaggcatggtggcaggtgcctgcagtcccagctaatcgggaggctgaggcagaagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcgccaccgtactccagcctgggcaacagagcgagactccgtctcaaaaaaaaataaaaaataaaaaaGCTACAttgataaagcattattggtatagttaggaaactgagtaattccatgtctggtatgactaggtaaaacgtcttttaacaaattagctggttttcagttctttcttttcaacaaatatgaaggaggaatgaacacaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaact-aaatcaaag-aattgtatgaactagttcattccccatctactta-ttttatgtgaacaagtttactcagggc--acaaacctatggaaacaaaatgtatatatacagtgttgaaaatcccaagttggtgggcacagtggttcacacctgtaatcccaacactttgggaagccgaggcaggtggatcactggagttcaggagctcgagaccagacatggcaaaaccccatctcaactaaaaaatacaaaaattagctgggtgtggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagattctgtctcaaaaaaacaaacaaaaaaaaaaac---------ccccaagtcattccaacaataagtcagtcatacaaaattacatgtttttttgttttgttttgtttttttttgagacagagtctcactctgtcgtcctgagtgcaatggcaaaatcttggcttactacaacctccacatcctaggctcagaaaattctcctgctccagcctcccgagtagctgggattatacacatgcaccaccacgcccagctaatttttgaac-tttagtagagacagggtttcaccatgtcggccaggctggtcttgaactcctgacctcatgtgatctacccacctcggc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10157289 1299 +  10928107 ggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagaccgagaccatccNNNNNNNNNNtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcagggagaccgagaccatcctgcctaacacggtgaaaccccatctctactaaaaatacaaaaaattagccaggcatggtggcaggcacttgtagtcccagctaatcaggaggctgaggcaggagaatggcgtgaacccaggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaag--agaaaataaaaaaGCTATAttgataaagcattattggtatagttaggaaactgagtaattccatgtctggtatgactaggtaaaacatcttttcacaaattagctggttttcagttctttcttttcaacaaatatgaaggaggaatgaatgcaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaact-aaatcaaag-aattgtatgaactagttcattccccatctac------ttatgtgaacaagtttactcagggcaaacaaacctatggaaacaaaatgtatatatacagtgttgaaaatcccaagttggtgggcacagtggttcacacctataatcccagcactttgggaagccgaagcaggtggatcactggaggtcaggagctcgagaccagacatggcgaaaccccatctcaactaaaaaatacaaaaattagccgggtgtggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcagaggctgcagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagactctgtctcaaacaaacaaacaaaaaaaaaaacaaaAAAGAAAcccaaatcattccagcaataagtcagtcatacaaaattacatg-ttttttgttttgttttgtttttt---gagacagagtctcactctgtcgtcctgagtgcaatggcaaaatcttggcttactacaacctccacgtcctaggctcagaaaattcttctgctccagcctcctgagtagctgggattatacacatgcactaccacgcccagctaatttttgaacttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcctgtgatctacccacctcggc
i ponAbe2.chr15_random      C 0 I 1365
s nomLeu3.chr6               17237157 1224 - 121039945 ggccaggcgcagtggctcatgcctgtaatctcagcactttgggaggccgaggcgggtggatcacgaggtca--------------------------------------------------------------------------ggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaatgagccgggcgtggtggcgggcgcctgtagtcccagccactcgggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagtcgagatcgcgccactgcactcgagcctgggcgacagagcgagactccgtctcaaaaaaaaataaaaaataaaaaaGCTATAttgataaagcattattggtacagttaggaaactgagtaattccatgtctggtatgactaggtaaaaaatcttttcacaaattagctgggtttcagttctttcttttca--caatatgaaggagg-atgaatgcaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaagtaaaatcaaagaaattgtatgaactagttcattccccatctacttatttttatgtgaacaagtttactcagggc--acaaacctatgg-aacaaaacgtatatatacagtgctgaaaatcccaagttggtgggcacagtggttcacaggtgtaatcccagcactttgggaagccgaggcaggtggatcactggaggtcaggagctcgagaccagacatggcgaaaccccatctcaactaaaaaatacaaaaattagccaggtatggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttacagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaacaaaaacaaaaacaaacaaaa-----ccccaagtcattccagcaataagtcagtcatacaaaattacatg-ttttttgttttgttttgttttct---gggacagagtctcactctgtcgtcctgagtgcaatggcaaaatcttggcttactacaacctccacctcctaggctcagaaaattctcctgctccagcctcccgagtagctgggattatatacatgcaccaccacgcccagctaatttttgaacttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcccgacctcaggtgatctacccacctcggc
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac3.chr7              106711298 1459 - 170124641 I

a score=41354.000000
s hg38.chr15_KI270850v1_alt    368182 153 +    430880 ctcccaaagtgctaggatcacaggcatgaaccaccatgcccagccttaaaattacatgagattttaaaagacctcaatttatgtcattaaaaactatttccaggctaggtgtggtggctcacatctgtaatcccaacactttagggggctaaa
s panTro4.chr15              80150058 153 +  99548318 cttccaaagtgctaggatcacaggcatgaaccaccgtgcccagccttaaaattacatgagattttaaaagacctccatttatgtcattaaaaactatttccaggctaggtgtggtggctcacatctgtaatcccaacactttagggggcTAAA
i panTro4.chr15             C 0 I 606
s nomLeu3.chr6               17238381 153 - 121039945 ctctgaaagtgctaggattacaggcatgaaccaccgtgcccagccttaaaattacatgagattttaaaagatctcaatttatgtcattaaaaactatttccaggctaggtgtggtggctcacatctgtaatcccaacactttagggggctaaa
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac3.chr7              106711298 1459 - 170124641 I
e ponAbe2.chr15_random       10158588 1365 +  10928107 I

a score=33255.000000
s hg38.chr15_KI270850v1_alt    368335 383 +    430880 gcaggaagatcacttgagcccaggagttcaagactgcctgggcaacacagggagaccccgtttctacaaaaagtaagacaaatagctggacatggtggtgtttgtctgtggtcccagctactgaggaggttgaggctacgatgaaccatgattgcgccactgcactctggcttaggcgacaggtaccttgtctc------aaacaaaaaacaaaacaagcatttccaataaacaattattaaagaataaaactttatcaagatttataacatttagattgccttaattgccctaacaatcatcattatcacctttgagacacaggaaataatttaaaatttcagtttatgtacttttgttgttacagagaaggatgacatgtgatcaac
s nomLeu3.chr6               17238534 389 - 121039945 gcaggaagatcacttgagcccaggagttcaagaccgcctgggcaacacagggagaccccgtttctacagaaaataagacaaatagctggacatggtggcgtgcgtctgtggtcccagctactgaggaggctgaggctacgatgagccatgattgtgccactgcactctggcttaggcaacaggtaccttgtctcaaacaaaaacaaaaaacaaaacatgcatttccaataaacaattattaaagaataaaattttaccaagatttataacatttagattgtcttaattgccctaccaatcgtcattatcacctttgagacacaggaaataatttaaaatttcagtttatgtacttttgttgttacagagaaggatgacatatgatcaac
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac3.chr7              106711298 1459 - 170124641 I
e ponAbe2.chr15_random       10158588 1365 +  10928107 I
e panTro4.chr15              80150211 606 +  99548318 I

a score=0.000000
s hg38.chr15_KI270850v1_alt    368718 336 +    430880 aaaagactctcaagcacggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagacgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcagtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgacattgcgccactgcagtctgcagtccggcctgggcgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac3.chr7              106711298 1459 - 170124641 I
e nomLeu3.chr6               17238923   0 - 121039945 C
e ponAbe2.chr15_random       10158588 1365 +  10928107 I
e panTro4.chr15              80150211 606 +  99548318 I

a score=68.000000
s hg38.chr15_KI270850v1_alt    369054 3 +    430880 aaa
s macFas5.chr7              108446228 3 - 171882078 aac
i macFas5.chr7              I 1456 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e rheMac3.chr7              106711298 1459 - 170124641 I
e nomLeu3.chr6               17238923 0 - 121039945 C
e ponAbe2.chr15_random       10158588 1365 +  10928107 I
e panTro4.chr15              80150211 606 +  99548318 I

a score=14055.000000
s hg38.chr15_KI270850v1_alt    369057 10 +    430880 aaaagactct
s panTro4.chr15              80150817 10 +  99548318 aaaagactct
i panTro4.chr15             I 606 C 0
s ponAbe2.chr15_random       10159953 10 +  10928107 aaaagactct
i ponAbe2.chr15_random      I 1365 C 0
s nomLeu3.chr6               17238923 10 - 121039945 aaaagactct
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106712757 10 - 170124641 aaaagactct
i rheMac3.chr7              I 1459 C 0
s macFas5.chr7              108446231 10 - 171882078 aaaagactct
i macFas5.chr7              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I
e chlSab2.chr29              21134324 1449 -  24206276 I

a score=671498.000000
s hg38.chr15_KI270850v1_alt    369067 381 +    430880 caagcacaaaatattacattaagataaaactcagcgggagaagtggactacaaatactaggagaaaagaaataatgggccaggcgcggtggctcacacctgtaatcccagcacattgggaggccaaggcaggcggataatgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctctactaaaaatactaaaaattagctgggcatggtgccacgtgcctgtagtcccagttgctcgagaggctgaggcagaagaatcgcttgaaactgggaggcggaggttgcagtgagctgagatcatgccactgcactccagcctggagacagagcaagactctgtctt-aaaaaaaaaaaaa-------------aagaagaagaag
s panTro4.chr15              80150827 385 +  99548318 caagcacaaaatattacattaagataaaactcagcgggagaagtggactacaaatactaggagaaaagaaataatgggccaggcgcggtggctcacgcctgtaatcccagcacattgggaggccaaggcgggcggataatgaggtcaagagatcgagaccatcctggccaacatggtgaaacctcttctctactaaaaatactaaaaattagctgggcatggtgccacgtgcctgtagtcccagttgctcgagaggctgaggcagaagaatcgcttgaaactgggaggcggaggttgcagtgagctgagatcacgccactgcactccagcctggagacagagcaagactctgtctt-gaaaaaaaaaaaa---------gaagaagaagaagaag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10159963 389 +  10928107 caagcacaaaatattacattaagataaaactcagcgggagaagtggactacaaatactaggagaaaagaaacaatgggccaggcgcagtggctcatgcctataatcccagcactttgggaggccaaggcgggcggatcatgaggtcaagagatcaagaccatcctggccaacatggtgaaaccccttctctaccaaaaatactaaaaattagctggacgtggtggcacgtgcctgtagtcccagttgcttgagaggctaaggcagaagaatcacttgaacctgggaggcggaggttgcagtgagctgagatcacgccactgcactccatcctggagacagggcaagactctgtctt-aaaaaaaaaaaaa-----aaaaaaagaagaagaagaag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17238933 394 - 121039945 caagcacaaaatattacattaggataaaactcagcgggagaagtggactacaaatactaggagaaaagaaataatgggccaggcacggtggcttacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctctactaaaaatactaaaaattagctggatatggtagcacacgcctgtagtcccagttgctcaagaggctgaggcagaagaatcacttgaacctgggaggcagaggttgcagtgagctgagatcgcgccactgcactccagcctggagacaaagcaagactctgtctt-aaaaaaaaaaaaaaaaaaaaaaaaagaagaagaagaag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106712767 393 - 170124641 caagcacaaaatattacgttaggataaaactcagcaggagaagtggactacaaatactagtagaaaagaaataatgggccaggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgtactaaaaacactaaaaattagctggacgtggtggtgcgcacctggagtcccagtggctcgagaggctgaggcaggagaatcgcttgaacctggaaggcagaggttgcagtgagctgagatcgcgccactgcactccagcctggcaacagggcaagattctcact--aaaaaaaaaaaaaaaaaaaaagaaggaggaagaggaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108446241 394 - 171882078 caagcacaaaatattacgttaggataaaactcagcaggagaagtggactacaaatactagtagaaaagaaataatgggccaggcgtggtggctcacgcctgtaaccccagcactttgggaggctgaggtgggcggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgtactaaaaacactaaaaattagctggacgtggtggtgcgcacctgtagtcccagttgctcgagaggctgaggcaggagaatcgcttgaacctggaaggcagaggttgcagtgagctgagatcgcgtcactgcactccagcctggcaacagggcaagattctcactc-aaaaaaaaaaaaaaaaaaaaagaaggaggaagaggaaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21135773 395 -  24206276 caagcacaaaatattacgttaggataaaactcagcaggagaagtggactacaaatactagtagaaaagaaataatgggctaggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcatgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgtactaaaaacactaaaaattagctggacgtggtggtgcgcacctgtagtcccagtcgctcgagaggctgaggcaggagaatcgcttgaacccagaaggcagaggttgcagtgagctgagatcacgccactgcactccagcctggcaacagggcaagattctccctcaaaaaaaaaaaaaaaaaaaaaaggaggaggaagaggaaa
i chlSab2.chr29             I 1449 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=1159689.000000
s hg38.chr15_KI270850v1_alt    369448 525 +    430880 aaaaaa-----------gaaataatgaaaagtttccccctgttaaagaactggtttaaatattttaaaatagataataggtctc-aaatctctctactattgtaaatCTACAG-TTTCACTTATAATAAAAATGTAGATACCAAGTTAAATATGCAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcagaggcattagtacattcatatttttgtgcaagcatcactactcttcacctctagagctttttttacgctaagctaaaattttgtaccattagacactaattcccc-actaccctctcctcctagcccctggttaccattattttactttgtctctatgaatttgactattgtagggaccttgtaagtggaattatacaatatttttcctttgtatcaggcttattttacttagcataatgtcttcaaggttcctccatgttgcagtacgtCCCCAAtttcttt----------tttt------------tttttcttttttt
s panTro4.chr15              80151212 527 +  99548318 aaaaaa-----------gaaataatgaaaagtttccccctgttaaagaactggtttaaatattttaaaatagataataggtctc-aaatctctctactattgtaaatCTACAG-TTTCACTTATAATAAGAACGTAGATACCAAGTTAAATATGCAAGGGGTACCCTGTACTAAAAAttttgttgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcagaggcattagtacattcatatttttgtgcaagcatcactactcttcacctctagagctttttttaccctaagctaaaattttgtaccattagacactaattcccc-actaccctctcctcctagcccctggttaccattattttactttgtctctatgaatttgactattgtagggacctcgtaagtggaattatacaatatttttcctttgtatcgggcttattttacttagcataatgtcttcaaggttcctccatgttgcagtacatccccaatttcttt--------tctttt------------ttttttttttttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10160352 532 +  10928107 aaaaaa-----------gaaataatgaaaagtttccccctgttaaagaactggtttacatattttaaaatagataataggtttc-aaatctctctactattgtaaattTACAG-TTTCACTTATAATAAAAATGTAGATACCAAGTTAAATATGCAAGGGGTACCCCGTACTAAAAAttctattgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcagaggcattagtacattcatatttttgtgcaagtatcactactcttcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattttcc-actaccctctcctcctagcccctggttaccattattttattttgtctctatgaatttgactattgtagggacctcgtaagtggaatcatacaatatttttcctttgtatcaggcttattttacttagcataatgtcttcaaggttcctcca---tgcagtaCATCCCCAAtttctttcttttttttctttt------------ttttttttttttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17239327 520 - 121039945 aaaaaa-----------gaaataatgaaaagttttcccctgtt----aactggtttacatagtttaaaatagataataggtctcaaaATCTTTCTACTATTGCAAATCTACAG-TTTCACTTATAATAAAAATGAAAATACCAAGTTAAATATGCAAGGGGTACCCTGTACTAAAAAtttttttgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcaaaggcattagtacattcatatttttgtgcaagcatcactactcttcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattctcc-actatcctctcttcctagcccctggttaccattattttactttgtctctatgaatttgactattgtagggacctcgtaagtggaattatacaatatttttcctttgtatcgggcttattttacttagcataatgtcttcaaggttcctccatgttgcagtaCATCCCCAAtttcttt------------tt------------ttttttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106713160 522 - 170124641 aaaaaa-----------gaaataatgaaa----tttccccattaaagaactggtttacatattttaaaatagataataggtatc-aaacctctctactattgtaaatCTACAGTTTTCACTTATAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaagtttaccactctaaccatttctgagcatacaattcagaggcactagtacattcatacttttgtgcaaacatcaccactattcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattcccc-actaccctctcctcctggatcctggttagcattattttaccttgtctctatggatttgactattgtagggacctcgtaagtggaattatacaatatttttcctttgtatcaggcttattttacttagcataacgtcttcaaggttcctccatgttatagtacatccccaattttttt----------tttt------------ttttttttttttt
i rheMac3.chr7              C 0 I 1177
s macFas5.chr7              108446635 522 - 171882078 aaaaaa-----------gaaataatgaaa----tttccccgttaaagaactggtttacatattttaaaatagataataggtatc-aaacctctctactattgtaaatCTACAGTTTTCACTTATAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaagtttaccactctaaccatttctgagcatacaattcagaggcactagtacattcatacttttgtgcaaacatcaccactattcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattcccc-actaccctctcctcctggctcctggttagcattattttaccttgtctctatggatttgactattgtagggacctcgtaagtggaattatacaatatttttcctttgtatcaggcttattttacttagcataacgtcttcaaggttcctccatgttatagtacatccccaattttttt----------tttt------------ttttttttttttt
i macFas5.chr7              C 0 I 4
s chlSab2.chr29              21136168 545 -  24206276 aaaaaaaaagaaataatgaagtaatgaag----tttccccgttaaagaactggtttacatattttaaaatagataataggtatc-aaacctctctactattataaatCTACAGTTTTCACTTACAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaagtttaccactctaaccatttctgagcatacaattcagaggcattagtacattcatacttttgtgcaaacatcaccactattcacctctagag-tttttttaccctaagctaaaactttgtaccattagacactaattccccaactgtcctctcctcttggctcctggttagcattattttaccttttctctatggatttgactattgtagggacctcgtaagtggaattatacaatatttttcctttgtatcaggcttattttacttagcataacgtcttcaaggttcctccatgttatagtacatccccaactttttt----------tttttaactttttaaattttttttttttt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22277685 513 + 158406734 agaaaa-----------gaaataataaaaagtttcccactattaaataattggtttacatattttaaaatagataataggtgtc-aaa----tctactattgtaAATGT-----TTCCACTTATAATAAAAATGTAGATACCAAGTTAAATATGCAAGGGGTACACTGTACTAAATAAT---ttgtggtaaaatatacatgaaatttaccattctaatcatttttgcacatacaattcagaggcattagtacattcacatttttgtgcaaccatcaccactattcacctcgagtgctttttttaccctaagctaaaactttgtaccattagacattaattcccc-actaccctctcctcctagaccctggttaccattattttacttcgtctcaatacatttgactatcgtagggacctcgtatgtgaaatcatacagtatttgtcctttgtatcaggcttattttacttagcataacaccttcaagattcatccatgttgtagtacgtccccccacccttt----------tttt------------tttttttttttt-
i calJac3.chr6              I 1868 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=489438.000000
s hg38.chr15_KI270850v1_alt    369973 293 +    430880 gagacagggtctccttctgtcacccaggttgggatgcaatgacgcaataatggctcactacagcctcagcctccc-aggatcaagcagtcctcccacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctaaatttttagagatggaagtctccccatgttgcccaggctgttgctgaacctctgggctcaagtgatccacccacctaggcctcccaaagtgctggaattacaggcatgagccaatgcctggcatgcat----gcattcattcattcaCTg
s panTro4.chr15              80151739 293 +  99548318 gagatagggtctccttctgtcacccaggttgggatgcaatgatgcaataatggctcactacagcctcagcctccc-aggatcaagcaatcctcccacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctgaatttttagagatggaagtctccccatgttgcccaggctgttgctcaacttctgggctcaagcgatccacccacctaggcctcccaaagtgctggaattacaggcatgagccaatgcctggcatgcat----gcattcattcattcactg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10160884 297 +  10928107 gagatagggtctccttctgtcacccaggttgggatgcaatgatgcaataatggctcactacagcctcagcctccc-aggatcaagcaatcctgccacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctaaatttttagagatggaagtctccctatgttgcccaggctgttgctgaacttctgggctcaagcgatccgcccacctaggcctcccaaagtgctagaattacaggcatgagccaATGCCTGGCATGCATGCACGCATTCATTCATTCATTg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17239847 293 - 121039945 gagacagggtctccttcagtcacccaggttgggatgtaatgacacaataatggctcactacagcctcagcctccc-aggatcaagaaatcctcccacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctaaatttttagagatggaagtctccctatgttgcccaggctgttgctgaacttctgggctcaagcgatccacccacctaggcctcccaaagtgctggaattacaggcatgagccaatgcctggcATGCAT----GTATTCATTCATTCATTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108447161 290 - 171882078 gagacagggtatccttctgtcacccaggttgggacgcagtggcgcaataatggctcactaccacctcagcctccc-aggatcaagcaatcgtcccacctcagcttctcaagtagctgggaccacagatgcatgttaccagcctggctaaatttttagagatagaggtctccctgtgttgcccaggctgt---tcaacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcctggcatgcat----gcattgattcattcactg
i macFas5.chr7              I 4 C 0
s chlSab2.chr29              21136713 290 -  24206276 gagacagggtatccttctgtcacccaggttgggacgcagtggcgcaataacggctcactacaacctcagcctccc-aggatcaagcaatcgtcccacctcagcttctcaagtagctgggaccacagatgcatgttaccagcctggctaaatttttagagatagaggtctccctgtgttgcccaggctgt---tgaacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcccggcatgcat----gcattgattcattcactg
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22278198 285 + 158406734 gagacagggtctccttctgccatccaggctaggatgcagtggcacaataacagctcactgcagccttggtctccctagcatcaagtaatcctcccatctcagcctctcaagtagctgggaccacaggtgcatgtcaccagcctggctacatttttagagatgggggtctccttatgttgtccaggctgttgttgaactcctgggatcaagcggtccacctgcctaggcctcccaaagtgctggaactatagggatgagccacttccc----tgcat---------cattcactcattg
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e canFam3.chr3               54438760 3361 +  91889043 I
e rheMac3.chr7              106713682 1177 - 170124641 I

a score=232235.000000
s hg38.chr15_KI270850v1_alt    370266 109 +    430880 ataggattttgctatgttgtccaggctggccccaaactcctgggctcaaatgatccttccttgcctcaccctctcgagtagctgggactacaggtgtgc--actactgtgc
s panTro4.chr15              80152032 109 +  99548318 ataggattttgctatgttgcccaggctggccccaaactcctgggctcaaatgatccttccttgcctcaccctctcgagtagctgggactacaggtgtgc--actactgtgc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10161181 109 +  10928107 ataggattctgctatgttgcccaggctggccccaaactcctgggctcaaatgatccttccttgcctcaccctctcgagtagctgggactacaggtgtgc--actactgtgc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17240140 103 - 121039945 ATAGGATTCTGC--tgttacccaggctggccccaaactcctgggctcaaatga----tccttgcctcaccctctcaagtagctgggactacaggtgtgc--actactgtac
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106714859 109 - 170124641 ATAggattttgctatgttgcccaggctgtccccaaatccctaggctcaaatgatccttccttgcctcaccctctcgagtagctggaactacaggtgtgc--accactgtgc
i rheMac3.chr7              I 1177 C 0
s macFas5.chr7              108447451 109 - 171882078 ataggattttgctatgttgcccaggctgtccccaaatccctaggctcaaatgatccttccttgcctcaccctctcgagtagctggaactacaggtgtgc--accactgtgc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21137003 109 -  24206276 ataggattttgctatgttgcccaggctgtccccaaatccctgggctcaaatgatccttccttgcctcaccctctcgagtagctggaactacaggtgtgc--accactgtgc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22278483 105 + 158406734 acaggattttgctatgttgcccaggctggccccagactcct-gcctc-----actctatcctgcctcaaagtctcaagtagctgggactactggtgtgccagaaactgtgc
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=728751.000000
s hg38.chr15_KI270850v1_alt    370375 308 +    430880 taggtttcctttttAAAGCTC----CTAATTTTGCATCGtacacaacatt---------------------------------ttgttcatccatccaattcatccactgatggacacctgggttgtttcctgtttctaccttttgactattgtaaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtcctcgctttcaattcttttgtgtgtatacctagaaggagaattgctggatcatatggtaacactatgtttaa-ttttttttggaagcaccacactc-ttttccccagcagcagtaccattttacattcccaccagcaatgcacaaatg
s panTro4.chr15              80152141 309 +  99548318 caggtttcctttttaaaactc----ctaattttgcatcgtacacaacatt---------------------------------ttgttcatccatccaattcatccactgatggacacctgggttgtttcctgtttctaccttttgactattgtaaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtcctcgctttcaattcttttgtgtgtatacctagaaggagaattgctggatcatatggtaatactatgtttaatttttttttggaagcaccacactc-ttttctccagcagcagtaccattttacattcccaccagcaatgcacaaatt
i panTro4.chr15             C 0 I 188
s ponAbe2.chr15_random       10161290 308 +  10928107 caggTttcctttttaaagctg----ctaattttgtatcatatacaacatt---------------------------------ttgttcatccatccaattcatccactgatggacacttgggttgtttcctgtttctaccttttgactattgtgaatagtactgttaggaacactagcatacaaa-tatgtgttcaagtcctcactttcaatttttttgtgtgtatacctagaaggagaattgctggatcatatggtaattctatgtttaa-ttatttttggaagcaccatactc-ttttccccagcagcagtaccattttacattcccaccagcaatgcataaatg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17240243 307 - 121039945 caggTttcctttttaaagctg----ctaattttgcatcatacacaacatt---------------------------------ttgttcatccatccaatttatccactgatggacacttgggttgtttcctgtttctaccttttgactattgtgaatagcactgttatgaacactagcatacaaa-tatgtgttcaagtcctcactttcaattcttttgtgtatatacctagaaggagaattgctggatcatatggtaattctatgtttaa--tttttttggaagcaccatactc-ttttccccagcagcagtaccattttacattcccaccagcaatgcacaaatg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106714968 301 - 170124641 caggTttcctttttaaag-------ctaattttgcattgtac---acatt---------------------------------ttattcatccatccaattcatccactgatagacagttgggttgtttcccatttctaccttttgactattgtgaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtccttgctttcaattattttgtgtgtatacctagaaggggaattgctggatcatatggtaattctatgtttaa--ttttttttgaagcaccatactc-ttttccccagcagcagtaccattttacatttccaccagcaatgcacaaatg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108447560 301 - 171882078 caggtttcctttttaaag-------ccaattttgcattgtac---acatt---------------------------------ttattcatccatccaattcatccactgatagacagttgggttgtttcccatttctaccttttgactattgtgaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtccttgctttcaattattttgtgcgtatacctagaagtggaattgctggatcatatggtaattctatgtttaa--ttttttttgaagcaccatactc-ttttccccagcagcagtaccattttacatttccaccagcaatgcacaaatg
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21137112 302 -  24206276 caggtttcctttttaaag-------ctaattttgcattgtac---acatt---------------------------------ttattcatccatccaattcatccactgatagacagttgggctgtttcccatttctaccttttgactattgtgaatagtactgttacgaacactagcatacaaa-tatgtgttcaggtccttgctttcaattattttttgtgtatacctagaaagggaattgctggatcatatggtaattctatgtttaa--ttttttttgaagcaccatactctttttccccagcagcagtaccattttacatttctaccagcaatgcacaaatg
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22278588 340 + 158406734 caggtttcctttttaaagctg----ctaatatttcattgttcataacattgtttatccatccatccatccatccatccatccatcctccatccatccaattcatccactgatgaacatttgggttgtttcctctttctaccttttgactattgtgaacagtactgttatggacactaacatacaaattatatgttcaagtccttgctttcaattcttttct-tgtatacctggaaggagaactgctggatcatatggtaattctatgtttaa--ttattttggaagcaccatacta-ttttccccaacagcagcaccactttacattttcaccagcaatgcacagatg
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54442121 272 +  91889043 tatacttcctttttaaggctgaataatattcctacattgtatat-acatt---------------------------------ttgtttatccactcaa-----ctgtcaatggccatttgggttatttcc-------acgtgttgcctactgtgaaaagtacagctgtgaataccattgtacaaa-tatgggttcaattcc--------------tttatatatacacacatatacacacct-ctg------atggtaattctacatttaa-tatttttgggaaccaccatacag-ctttacatactggcagcactagttt-tattct-----atgatgcacaagtg
i canFam3.chr3              I 3361 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=261445.000000
s hg38.chr15_KI270850v1_alt    370683 104 +    430880 ttctaatttctccatatccttgccgacaatttaca--------ttttaataatggccatcctaacaa-gtgtaaactggtatctcattgcggtGTACATT------TTTTTTAAAAATT
s panTro4.chr15              80152638 104 +  99548318 ttctaatttctccatatccttgccgacaatttaca--------ttttaataatggccatcctaacaa-gtgcaaactggtatctcattgtggtgtacatt------tttttttaaaatt
i panTro4.chr15             I 188 C 0
s ponAbe2.chr15_random       10161598 109 +  10928107 ttctaatttttccatatccttgctgacaatttatatt---ttgttttaataatggccaccctaacag-gtgtaaactggtatttcattgtggtGTACATT------ATTTTAAAAAATT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17240550 109 - 121039945 ttctaatttctccatatccttgccgacaatttacatt---ttgttttaataatggccatcctaacag-gtgtaaactggtatctcattgtggtGTACATT------TTTTTTTAAAATT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106715269 108 - 170124641 ttctaatttctccatatccttgccgacaatttatatt---ttgttttaataatggccatcctaacag-gtgtaaactggtatctcattgtggtgtacatt-------ttttaaaaaatt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108447861 108 - 171882078 ttctaatttctccatatccttgccgacaatttatatt---ttgttttaataatggccatcctaacag-gtgtaaactggtatctcattgtggtGTACATT-------TTTTAAAAAATT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21137414 108 -  24206276 ttctgatttctccatatccttgccgacaatttctatt---ttgttttaataatggccatcctaacag-gtgtaaactggtatctcattgtagtGTACATT-------TTTTTTAAAATT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22278928 109 + 158406734 ttctaatttctccatatccttgccttcaatttatatt---ttgttttaataatggccatgctaacagtgtataaactagtatctcattgtggCATATGTT-------TTTTAAAAAATT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54442393 115 +  91889043 ttccaaattctccacatccttac--acatactactttctactgttttaacaatgaccatcttaatcg-gtgtgaacgggtatctcactgtgg-gtatattggtttgttttttaaagatt
i canFam3.chr3              C 0 I 183
e mm10.chr7                  81382146 10520 + 145441459 I

a score=153006.000000
s hg38.chr15_KI270850v1_alt    370787 66 +    430880 AGGTTGTACCCAAA----TGTTTGAAGATTGCTGTTGCCTAATTCATGAATCCC-----CAATGTTTTTAAAAAT
s panTro4.chr15              80152742 66 +  99548318 agGTTGTACCCAAA----TGTTTGAAGATTGCTGTTGCCTAATTCATGAATCCC-----CAATGTTTTTAAAAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10161707 66 +  10928107 AGGTTGTACACAAA----TGTTTGAAGATTGCTGTTGCCTAATTCACTAATCCC-----CAATGTTTTTAAAAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17240659 66 - 121039945 AGGTTGTACACAAA----CGTTTGAAGATTGCTGTTGCCTAATTCGTGAATCCC-----CAATGTTTTTAAACAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106715377 62 - 170124641 agtCTGTACAAAAA--------TGAAGATTGCTGTTGTCTAATTCATGAATCCC-----AAATGTTTTTAAAAAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108447969 62 - 171882078 AGTCTGTACAAAAA--------TGAAGATTGCTGTTGCCTAATTCATGAATCCC-----GAATGTTTTTAAAAAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21137522 62 -  24206276 AGGCTGTACAAAAA--------CGAAGATTGCTGTTGCCTAATTCATGAATCCC-----GAATGTTTTTAAAAAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22279037 66 + 158406734 AGGCTGTACACAAA----TGTTGGAAGATTCCTGTTGCCTAATTCATGAATCCC-----CAATGTTTTAAAAAAT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54442691 75 +  91889043 AGGATGTATACAAACCAACGTTTTAAGATTGCAGCTACCTTGTTCATGGTTCTCCCAGACCATGTTTTTAAAAAT
i canFam3.chr3              I 183 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=216000.000000
s hg38.chr15_KI270850v1_alt    370853 120 +    430880 CTCCCCGACACCAGG--TTTTTGTTGAATTGCTTTTGTTGAAT-TGCCATCC-AAGTGGT-CCTAAAGAC-AATGGCATCTTCTTGCagcattctacctcactggttacagtgatggtcccatagg
s panTro4.chr15              80152808 106 +  99548318 CTCCCCGACACCAGG--TTTTTGTTGAATTGC---------------CATCC-AAGTGGT-CCTAAAGAC-AATGGCATCTTCTTGCagcattctacctccctggttacagtgatggtcccatagg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10161773 107 +  10928107 CTCCCCAACACCAGG--TTTTTGTTAAACTGC---------------CATCCAAAGTGGT-CCTGAAGAC-AATGGCATCTTCTTGCagcattctacctcactggttacagtgatggtcccatagg
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106715439 120 - 170124641 CTCCCCCACACCAGG--TTTTTGTTGAATTGCTTTTGTTGAAT-TGCCATCC-AAGTGGT-CCTAAAGGC-AATGGCATCTTCTAGCAGgattccacctcactagttacagtgatggtcccatagg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108448031 120 - 171882078 CTCCCCCACACCAGG--TTTTTGTTGAATTGCTTTTGTTGAAT-TGCCATCC-AAGTGGT-CCTAAAGGC-AATGGCATCTTCTCGCAGGATTCCACCTCACTAGTTACAGTGATggtcccatagg
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21137584 120 -  24206276 CTCCCCCACACCAGG--TTTTTGTTGAATTGCTTTTGTTGAAT-TGCCATCC-AAGTGGT-CCTAAAGGC-AATGGCATCTTCTAGCAGGATTCCACCTCACTAGTTACAGTGATggtcccatagg
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22279103 122 + 158406734 CTCCCCAACACCAGGTTTTTTTTTTTAATTGCTTTTGTTGAAT-TGCCATCC-AAGTGGT-CCTAAAGGC-AATGGCATCTTCTTGCAGGATTCTACCTCCCTGGTTACAGTAATGGTCCCATAGG
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54442766 120 +  91889043 CTCCCACACATCAGG--TTTTTGTTTGATCTTTTCTTCTTCCTATGGCATAT-AAATGGTCCCTAAAGGCAAATGCCACCCTCCTGCAGGATTCTGCTTCACTGATT--AGTGATGGt-ccacagg
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e nomLeu3.chr6               17240725   0 - 121039945 C

a score=436269.000000
s hg38.chr15_KI270850v1_alt    370973 160 +    430880 taagtatctgactcaagctgggcaagaattacccattcccatgactacagagaccagtccaggtatgggtatgacttaagccaagctagctgggtat--ctttccttgagatttttctaactgtatataatggaaaaagaactatttccTGATTGTCCATGA
s panTro4.chr15              80152914 160 +  99548318 taagtatctgactcaagctgggcaagaattacccatccccatgactacagagaccagtccaggtatgggtatgacttaagccaagctagctgggtat--ctttccttgagatttttCTAACTGTATATAACGGAAAAAGAACTATTTCCTGATTGTCCATGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10161880 160 +  10928107 taagtatctgactcaagctgggcaagaattacccaaccccattactacagagaccagtccaggtatgggcatgacttaagccaagctaCCTAGGTAT--CTTTCCTTGAGATTTTTCTAACTGTATATAATGGAAGAAGAACTATTTCCTGATTGTCCATGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17240725 160 - 121039945 TAAGTATCtgactcaagttgggcaagaattacccatccccatgactacagagaccagtccaggtatgggcatgacttcagccaagttaggtgggtat--ctttccttgagatttttCTAACTGTATATAATGGAAGAAGAATTATTTCCTGATTGTCCATGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106715559 160 - 170124641 taagtatctgactcaagctgggcaagaattacccatccccatggccacagagaccagtccaggtatgggcatgacttaagccaagctagctgggtat--ctttccttgagacttttCTAACTGTATATAGTGGAAGAAGAACTATTTCCTGATTGTCCATGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108448151 159 - 171882078 taagtatctgactcaagctgggcaagaattacccatccccatggccacagagaccagtccaggtatgggcatgacttaagccaagctagctgggtat--ctttccttgagatttttCTAACTGTATATAGTGGAAGAA-AACTATTTCCTGATTGTCCATGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21137704 160 -  24206276 taggtatctgactcaagctgggcaagaattacccatccccatgaccacagagaccagtccaggtatgggtatgacttaagccaagctagctgggtat--ctttccttgagatttttCTAACTGTATATAGTGGAAGAAGAACTATTTCCTGATTGTCCATGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22279225 157 + 158406734 TAAGCATCTGACTCAAGCTAAGCAAGAATTACCCAACCCCATGACTACAGAGACCAGTCCAGGTATAGGCATGACTTAAGCCAACCTAGCTGGGTAT--ATTTCCTTGAGATTTTTCTAACTGTGGGTAGTGGAAG---AACTATTTCCAGATTGTCCATGA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54442886 160 +  91889043 tgaacatgtaaccccacctgggcttgaataacccattcctgggactacagagacttgtccaagtatgggcacaactcacaccaagccacctgggggttgccctttttgcAATTTTTCTAATTAGACATAGTGGAAGAAGAACCATTTCCTGGC--TTCATGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=273884.000000
s hg38.chr15_KI270850v1_alt    371133 77 +    430880 TGCCAAAGGATGTGAGCATATACCCTTTCTC------ATAAC-TGGCAACTCTGCAAAAGGAGATAATGAAACTCACACTGGGA
s panTro4.chr15              80153074 77 +  99548318 TGCCAAAGGATGTGAGCATATACCCTTTCTC------ATAAC-TGGCAACTCTGCAAAAGGAGATAATGAAACTCACACTGGGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10162040 77 +  10928107 TGCCAAAGGATGTGAGCACATACCCTTTCTC------ATAAC-TGGCAACTCTGAAAAAGGAGATAATAAAACTCACACTGGGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17240885 77 - 121039945 TGCCAAAGGATGTGAGCATATACCCTTTCTC------ATAAC-TGGCAACTCTGCAAAAGGAGATAATGAAACTCACACTGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106715719 77 - 170124641 TGCCAAAGGATGTGAACATACACCCTTTCTC------ATAAC-TGGCAACTCTGCAAAAGGAGATAATGAAACTCACACTGGGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108448310 77 - 171882078 TGCCAAAGGATGTGAACATACACCCTTTCTC------ATAAC-TGGCAACTCTGCAAAAGGAGATAATGAATCTCACACTGGGA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103216015 77 - 162156779 tGCCAAAGGATGTGAACATACACCCTTTCTC------ATAAC-TGGCAACTCTGCAAAAGGAGATAATGAAACTCACACTGGGA
i papAnu2.chr7              N 0 C 0
s chlSab2.chr29              21137864 77 -  24206276 TGCCAAAGGATGTGAACATACACCCTTTCTC------ATAAC-TGGCAACTCTGCAAAAGGAGATAATGAAACTCACACTGGGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22279382 77 + 158406734 CGCCAAAGGATGTGAGCATATACTCTTTCTC------ATAAC-AGGCAACTCTGCAAAAGGAGATAATGAAACTCATGGTGGGA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54443046 84 +  91889043 TGCTAGAGAAGGCAAGCATAACCCCTTCCCCACCCAGATAATGGGGCAATTGTGCAAAAGGAGAAAATGAAACCCACACTTGGG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=1526851.000000
s hg38.chr15_KI270850v1_alt    371210 445 +    430880 AATGAGCAGAGGAAAGACAGAAATAGA----CAAAATTGGAGGCCACAGATTCAGTATC----CCTAGCTTTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCACATTTTACTAAAGTAAGTTCTAATTTGGTGTTTGATTTTTTACAAACGGGAGTGTTCTGCGTAATTCAGGCCCTTT-AGCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGATAAAAATCTCTGGGACAAAAGCCCTTAATATCCTGGCACCAGCTAAGAAAGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTAA-----AGACCACCTTGTCAAATTCCTCGCCA---TCCCGTC-TTTTTTT-----ACTAGAAAGCACACAAGGCTCAGAGATGGCCATAAGCGACAAAGCTACTAAAAGGCAGAAG----ATCCAAATCTCGATTTGTTGGTCT
s panTro4.chr15              80153151 450 +  99548318 AATGAGCAGAGGAAAGACAGAAATAGA----CAAAATTGGAGGCCACAGATTCAGTATC----CCTAGCTTTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCACATTTTACTAAAGTAAGTTCTAATTTGGTGTTTGATTTTTCACAAATGAGAGTGTTCTGCGTAATTCAGGCCCTTT-AGCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGATAAAAATCTCTGGGACAAAAGCCCTTAATATCCTGGCACCAGCTAAGAAAGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTAA-----AGACCACCTTGTCAAATTCCTCGCCA---TCCCGTC-TTTTTTT-T---ACTAGAAAGCACACAAGGCTCAGAGATGGCCATAAGCGACAAAGCTACTAAAAGGCAGAAGTAAGATCCAAATCTCGATTTGTTGGTCT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10162117 450 +  10928107 AATGAGCAGAGGAAAGACAGAAATAGG----CAAAATTGGAGGCTACAGATTCAGTATC----CCTAGCTTTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCACATTTTACTAAAGTAAGTTCTAATTGGGTGTTTGATTTTTTACAAATGAGAGTGTTCTGCGTAATTCAGGCCCTTT-AGCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGATAAAAATCTCTGGGACAAAAGCCCTTAATATCCTGGCACCAGCTGAGAAAGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTAA-----AGACCACCTAGTCAAATTCCTTGCCACCCCCCCATC-TTTTTTT-----ACTAGAAAGCACACAAGGCTCAGAGGTGGCCATAAGCGACAAAGCTACTAAAAGGCAGAAGTG--ATCCAAATCTCGATTTGCTGGTCT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17240962 447 - 121039945 AATGAGCAGAGGAAAGACAGAAATAGG----CAAAATTGGAGGCCACAGATTCAGTATC----CCTAGCTGTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCACATTTTACTA----AAGTTCTAATTGGGTGTTTGATTTTTTACAAATGAGAGTGTTCTGCGTAATTCAGGCCCTTT-AGCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGATAAAAATCTCTGGGACAAAAGCCCTTAATATCTTGGCACCAACTGAGAAAGTCAGCCACAAAAGAAAGCAGGAAAGAAGCGTAA-----AGACCACCTTGTCAAATTCCTTGCCA-CCTCCCATC-TTTTTCT-----ACTAGAAAGCACACAAGGCTCAGAGATGGCCATAAGCAACAAAGCTACTAAAAGGCAGAAGTAAGATCCAAATCTCGATTTGTTGGTCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106715796 457 - 170124641 AATGAGCAGAGGAAAGACAGAAATAGG----CAAAATTGGAGGCCACAGATTCAGTATC----CCTAGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCACATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTGCTTACAAATGAAAGTGTTCTGTGTAATTCAGGCCCTTT-AGCAAGGATAGAGCAAACAAGTAACTACTGCATGCAGGATAAAAATCTCTGGGACAAAAGCCCTTAATGTCCTGGCACCAGCTGAGAAAGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTGAAGACCAGACCACCTTGTCAAATTCCTCGCCA-CCACCCATC-TTTTTTTTT---AGAAGAAAGCACACGAGGCTCAGAGATGGCCATAAGCCATAAAGCTACTAAAAGGCAGAGGTGAGATCCAAATCTCAATTTGTTGGTCT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108448387 457 - 171882078 AATGAGCAGAGGAAAGACAGAAATAGG----CAAAATTGGAGGCCACAGATTCAGTATC----CCTAGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCACATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTGCTTACAAATGAGAGTGTTCTGTGTAATTCAGGCCCTTT-AGCAAGGATAGAGCAAACAAGTAACTACTGCATGCAGGATAAAAATCTCTGGGACAAAAGCCCTTTATGTCCTGGCACCAGCTGAGAAAGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTGAAGACCAGACCACCTTGTCAAATTCCTCGCCA-CCACCCATC-TTTTTTTTT---AGAAGAAAGCACACGAGGCTCAGAGATGGCCATAAGCCACAAAGCTACTAAAAGGCAGAGGTGAGATCCAAATCTCAATTTGTTGGTCT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103216092 458 - 162156779 AATGagcagaggaaagacagaaatagg----CAAAATTGGAGGCCACAGATTCAGTATC----CCTAGCTTTCCAGTAATTCTTTCCTACTTTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCACGTTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTGCTTACAAATGAGAGTGTTCTGTGTAATTCAGGCCCTTT-AGCAAGGATACGGCAAACAAGTAACTACTGCATGAAGGATAAAAATCTCTGGGACAAAAGCCCTTAATGTCCTGGCACCAGCTGACAAAGTCagccacaaaagaaagcaggaaagaagcTTGAAGACCAGACCACCTTGTCAAATTCCTCGCCA-ccacccatctttttttttt---agaagaaagcaCACGAGGCTCAGAGATGGCCATAAGCCACAAAGCTACTAAAAGGCACAGGTGAGATCCAAATCTCAATTTGTTGGTCT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21137941 457 -  24206276 AATGAGCAGAGGAAAGACAGAAATAGG----CAAAATTGGAGGCCACAGATTCAGTATC----CCTAGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCACATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTGCTTACAAATGAGAGTGTTCTGTGTAATTCAGGCCCTTT-AGCAAGGATACAGCAAACAAGTAACTACTGCATGCAGGATAAAAATCTCTGGGACAAAAGCCCTTAATATCCTGGCACCAGCTGAGAAAGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTGAAGACCAGACCACCTTGTCAAATTCCTCACCA-CCACCCATC-TTTTTTTTT---AGAAGAAAGCACACGAGGCTCAGAGATGGCCATAAGCCACAAAGTTACTAAAAGGCAGAGGTGAGATCCAAATCTCAATTTGTTGGTCT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22279459 439 + 158406734 AATGAGCAGAGGAAAGACAGAAATAGA----CAAAACTGGAGGCCACAAATTCAGTATC----CCCAGCTTTCCAGTGATTCCTTCCTATTCCGTGAGCTTTGTATCAACAGC-TTCTAACATATCCCACATTTTACTAAAGTAAGTTCTAACTGGGTGTTTAATTGTTTACAAATCAGAGTGTTCTGTGTAATTCAGGCCCTTT-AGCAAGGATAGGCTAAACGAGCAACTACTGCATGCAGGATAAAAATCTCTGGTACAAAAGACCTTAATGTCCTGGCACCAGATGAAAA----AGCCACAAAAGACAGCAGGAAAGCAGTTT-------ATACCATCTTGTGAAATTCCTTGCCA-CCCTCCATT-TTTTTTTTTTAAACTAGAAAGCACACAAGGCTCAGAGATGGCCGTAAGCAACAAAGCTACTAAAAGGCAGAGGTGAGAT----------ATTTGTTCCTCT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81392666 406 + 145441459 AAGAAGCAAAGGAAA-ATCGATCTTGA----TGAAACTGGAGTCT-TAGCTTACACATT----CCTGGTTTTTCAATCATTCCTTTCTATTTTGTGAACTATGTACTGGGAAATTTCCAACATAG--TATTTTTTTTGAAAGTTAGTTCTCATTA---ATTTAGTCATTTTTAAATAAGAAAA---TGTGTGATTCAGACCCTTT-CACAAGAATTGATCAACCAAGCCAATAGTACACACAAATCAAAATTCTCTGGGATCAAAGCCCTCATAATTCTAGTACCA----AGAAAGAGAGCCGCAGA--AAAGAAGTACAAAAACTGAA-----GGA----------------------A-CCTCCTGTT-TGTTCTT-C---ACTGGAGA----ACAAAGCTTAGAATAAACCAAA---GACACTGCTACCAAAA-GCAGAGGTAGAATCTAAATCTAGACCTGCTGGTTT
i mm10.chr7                 I 10520 I 1371
s canFam3.chr3               54443130 413 +  91889043 ------GAGAGGCCACAAAGAGACAGGATCTTAACATTGAAGGCTCTGGATTCAATGTCCTTACTTAGTTTTCCGGCCATTTCTTCCAATTCTGTGAGGTATATACCAAGAGCCTTCCAACACATCTCGTAATATGCTAAGGTTAGTTCTAATCAGGTGTTTGGTTATTTGCAAGTAAGAGCATTCTGCATAATTCAGGTCTGTTAAGCAAGGATTGATCAAGAAAGTAATTACTACAGGCAGGGTTGAGAGCTCTGGGACAAAAGCCCCTAACACCCTGTCACCAAGTAAGA--GTCGGCCACAAAGAaaagcaggaagggatctaga-----aaaacagttggttaaa---------a---------c-ctttttc-----tccagagagcaaacaaggcccagagagggcca-aagtgacaaagctactaagtggcagaggtgggatg---------------------
i canFam3.chr3              C 0 C 0

a score=576407.000000
s hg38.chr15_KI270850v1_alt    371655 174 +    430880 CAAATACAGGGACTAA-CTGATCCCCTGACCTCTCTCCCACAATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAATAACCCTACTCAGACCTGTTTTATCATTAAGTTAGCAAAGGATCCCTTTTCTGCACTCAGGTCCCCAT---ACTGTGTACTAAACCTATCCCATCA
s panTro4.chr15              80153601 174 +  99548318 CAAATACAGGGACTAA-CTGATCCCCTGACCTCTCTCCCACAATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAATAACCCTACTCAGACCTGTTTTATCATTAAGTTAGCAAAGGATCCCTTTTCTGCACTCAGGTCCCCAT---ACGGTGTACTAAACCTATCCCATCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10162567 174 +  10928107 CAAATACAGGGACTAA-CTGATCCCTCAACCTCTCTCCCACAATGGGACACTTT-CTAGACCCAGGTCTACGTTCATACATAATAACCTTACTCAGACCTGTTTTATCAGTAAGTTAGCAAAGGATTCCTTTTCTGAACTCAGGTCCCCAT---GCTGTGTACTAAACCCATCCCATCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17241409 174 - 121039945 CAAATACAGGGACTAA-CTGATCCCCCGACCTCTCTCCCACGATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAATAACCCTACTCAGACCTGTTTTATCAGTAAGTTAGCAACGGATCCCTTTTCTGCACTCAGGTCCCCAT---GCTGTGTACTAAACCTATCCCATCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106716253 174 - 170124641 CAAACACAGGGACTAA-CTGCTCCCCCGACCCCTCTCCCACGATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCTACTCAGACCTGTTTTATCAGTAAGTTAGCAAAGGATCCCTTTTCTGCACTCAGGTCCACAT---GCTGTGTACTAAACCCATCCCATCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108448844 174 - 171882078 CAAATACAGGGACTAA-CTGCTCCCCCGACCCCTCTCCCACGATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCTACTCAGACCTGTTTTATCAGTAAGTTAGCAAAGGATCCCTTTTCTGCACTCAGGTCCACAT---GCTGTGTACTAAACCCATCCCATCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103216550 174 - 162156779 CAAATACAGGGACTAA-GTGCTCCCCCGACCCCTCTCCCACGATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCTACTCAGACCTGTTTTATCAGTAAGTTAGCAAAGGATCCCTTTTCTGCACTCAGGTCCACAT---GCTGTGTACTAAACCCATCCCATCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21138398 174 -  24206276 CAAATACAGGGACTAA-CTGCTCCCCCGACCCCTCTCCCATGATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCTACTCAGACCTGTTTTATCAGTAAGTTAGCAAAGGATCCCTTTTCTGCACTCAGGTCCCCAT---GCTGTGTACCAAACCCATCCCATCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22279898 174 + 158406734 CAAATCCAGGGAGTAATCTGCTTCCCCGACCTCTCTCCCATGATAGGACACTTT-CTAGACCCAGGTCTGCACTCATAC---ATAACCCTACTCAGACCTGTCTTATCAGTAAGTTAGCAAAGTATCCATTTTCTGCACTCAGGTCC-CATGGAGCTGTGTACTAAAACCATCCCGTCA
i calJac3.chr6              C 0 I 200
s canFam3.chr3               54443543 166 +  91889043 caaatccagAGAACCA-CCTGTTCTCTTGCCTCTCTCCTACCCTGGGGTACTTTCCTAGA--TAAGTCTGCACTCATAT---CTGCCCCAACTCAGAC-----TTATCAGTAAATTAGTG--GATTCTCTTTTTACCACTTAGGTCCCCATGGAGCTTTGTACTAAACCCATCCCATCC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I

a score=33162.000000
s hg38.chr15_KI270850v1_alt    371829 12 +    430880 TACTAGGAGttc
s panTro4.chr15              80153775 12 +  99548318 TACTAGGAGttc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10162741 12 +  10928107 TACTAGGAGTTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17241583 12 - 121039945 TACTAGGAGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106716427 12 - 170124641 TACTAGAAGTTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108449018 12 - 171882078 TACTAGAAGTTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103216724 12 - 162156779 TACTAGaagttc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21138572 12 -  24206276 TACTAGAAGTTT
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54443709 12 +  91889043 TATCAAGGGTTC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I

a score=587655.000000
s hg38.chr15_KI270850v1_alt    371841 281 +    430880 tttttttttttttttttttttt-------gagacacagtctcactctgttgccccggctggagtgcagtggcgtgatctggactcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccctgagtagctcgga----caacagacactggccaccacgac-agctaattttttgtatttttagtagagatggggtttcatcatgttaaccaggatggtcttgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgTAGGAGTTT
s panTro4.chr15              80153787 285 +  99548318 tttttttttttttttttttttt---ttttgagacacagtctcactctgttgccccggctggagtgcagtggcgcgatctggactcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccctgagtagctcgga----caacagacactggccaccacgac-agctaattttttgtatttttagtagagatggggtttcatcatgttaaccaggatggtctcgatctcctgaccttgtgatccgcccacctcggcctcccaaaatgctgTAGGAGTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10162753 276 +  10928107 AAttctttttttt----------------gagacacagtctcactctgttgcccaggctggagtgcagtggcgcaatcttgactcaccgcaagctctgcctcctgggttcacgccattctcctgcctcagcctccctgagtagctgagacaaccaacagacgccggccaccatgac-ggctaattttttgtatttttagtagagatagggtttcgtcatgtcagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcggcctcccaaagtactgTAGGAGTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17241595 288 - 121039945 AATTGttttttttttttttttttttttttgagacgcagtctcactctgttgcccaggctggagtgcactggcacgatcttgactcaccgcaagctctgcctcccgggttcacgccattctcctgcctcagcctccctgagtagctggga----caacagacgccggccaccacgac-ggctaattttctgtatttttagtagcgatggggtttcatcatgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcttcccaaagtgctgTAAGAGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106716439 275 - 170124641 AA------tttttttttttttt-------gagacggagtctccctctgtcgcccaggctggagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggttcacgccattctcctgcctcagtct-cctgagtagctggga----ctgcagacgcccgccaccacgcctggctacgtttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgCAGGAGTTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108449030 275 - 171882078 AA------tttttttttttttt-------gagacagagtctccctctgtcgcccaggctggagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggttcacgccattctcctgcctcagtct-cctgagtagctggga----ctgcagacacccgccaccacgcctggctacgtttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgCAGGAGTTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103216736 280 - 162156779 aattc-tttttttttttttttt-------gagacggagtctccctctgtcgcccaggctggagtgcagtcgtgcgatcctcactcactacaagctctgcctcccgggttcacgccattctcctgcctcagtct-cctgagtagctggga----ctgcagacgcctgccaccacgcctggctacgtttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagcgctgcaGGAGTTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21138584 281 -  24206276 AAttcttttttttttttttttt-------gagacggagtctccctctgtcgcccaggctggagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggtttacgccattctcctgcctcagtct-cctgagtagctggga----ctgcagacgcccgccaccatgcctggctacttttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatctgcctgcctcagccccccaaagtgctgCAGGAGTTC
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e canFam3.chr3               54443721   0 +  91889043 C

a score=1662858.000000
s hg38.chr15_KI270850v1_alt    372122 613 +    430880 AATTCTTAACACTAACTCCCTCACCCTCCCCACTACTCTCTCCACAATCTGCTACTTATTCAGCAGAAAGTCAATTTCACATTCGGGTGTTTCTAAGATTTCGCTGC--TATGTGC-------ATATATTATTTTCAAAGGCGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTACTGCTTATGGTATGGGGGAGTTCTGAAGCACGCCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAGTATAACCAAAACACAATGAAAC--ATTACTTTACCTGACACTACACTGTTCAAA-TTGGGGTCTGCAGAAGTTCCTTAAACAGTACATCAAATTGGAGACCCTTTACAGTGCCAATCACGACTGCATCTACATAATATAAAAGCCAGTTATTTAAAACAGGAAGGCAgggtat---------ttccatat--------agagggtaaattggtacaaca-ttctggagagcaatctgacaaaaacattgaaagcttc-aaaag--atttattctttgataaagaaatactacttttagaaatttatcctatgtccaa
s panTro4.chr15              80154072 615 +  99548318 AATTCTTAACACTAACTCCCTCACCCTCCCCACTACTCTCTCCACAATCTGTTACTTATTCAGCAGAAAGTCAATTTCACATTCGGGTGTTTCTAAGATTTCGCTGC--TATGTGC-------ATATATTATTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTACTGCTTATGGTATGGGGGAGTTCTGAAGCACGCCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAGTATAACCAAAACACAATGAAAC--ATTACTTTACCTGACACTACACTGTTCAAA-TTGGGGTCTGCAGAAGTTCCTTAAACAGTACATCAAATTGGAGACCCTTTACAGTGCCAATCACGATTGCATCTACATAATATAAAAGCCAGTTATTTAAAACAGGAAGGCAgggtat---------ttccatat--------agagggtaaattggtacaaca-ttctggagagcaatctgacaaaaacattgaaagcttc-aaaagatatttattctttgataaagaaatactacttttagaaatttatcctatgtccaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10163029 615 +  10928107 AATTCTTAACACTAACTCCCTCACCCTCCCCACTACTCTCTCCACAATCTGCTACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTCGCTGC--CATGTGC-------ATATATTATTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCCGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTAT-GGGGAGTTCTGAAGCAGACCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAGTATAACCAAAACACAATGAAAC--ATTACTTTACCTGCCACTACACTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACAGTACATCAAATTGGAGACCCTTTACAGTGCCAACCACGATTGCATCTACAGAATATAAAAGCCAGTTATTTAAAACAGGAAGGCAGGGTAT---------TTCCATAT--------Agagggtaaattggtacaaca-ttctggagagtaatctgacaaaaatactgaaagcttc-aaaagatatttattctttgataaagaaatactacgtctagaaatttatcctatgtccaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17241883 616 - 121039945 AATTCTTAACACTAACTCCCTCACCCTCCCCACTACTCTCTCCACAATCTGCTACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTATTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTATGGGGGAGTTCTGAAGCAGACCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAGTATAACCAAAACACAATGAAAC--ATTACTTTACCTGACACTACACTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACAGTACATTAAATTGGAGACCCTTTACAGTGCCAACCACAATTGCATCTACAGAATATAAAAGCCAGTTATTTAAAACAGGAAGGCAGGGTAT---------GTCCATAT--------Agagggtaaattggtataaca-ttctggagagtaatctgacaaaaacattgaaagcttc-gaaagatatttattctttgataaagaaatactacttttacaaatttatcctatgtccaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106716714 626 - 170124641 AATTCTTAACACTAACTCCCTCACCCTCCCCACTACTCTCTCCACAATCTGCTACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTATGGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATGCCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAGTATAACTAAAACACAATGAAAC--GTTACTTTACCTGACACTACGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTTTACAGTGCCAACCACAAATGCATCTACAGAATATAGAAGCCAGTTATTTAAAACAGGGGGGCAgggtatttccatatattccatat--------agagagtaagttggtacaaca-ttgtggagagtaatctgacaaaaacatggaaagctttgaaaagatatttattatttgataaagaaatactacttttagaaattcatcctatgtccaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108449305 626 - 171882078 AATTCTTAACACTAACTCCCTCACCCTCCCCACTACTCTCTCCACAATCTGCTACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTATGGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATGCCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAGTATAACTAAAACACAATGAAAC--GTTACTTTACCTGACACTACGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTTTACAGTGCCAACCACAAATGCATCTACAGAATATAAAAGCCAGTTATTTAAAACAGGAGGGCAgggtatttccatatattccatat--------agagagtaagttggtacaaca-ttgtggagagtaatctgacaaaaacatggaaagcttcgaaaagatatttattatttgataaagaaatactacttttaaaaattcatcctatgtccaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103217016 617 - 162156779 AATTCTTAACACTAACTCCCTCACTCTCCCCACTACTCTCTCCACAATCTGCTACTTATTCAGTAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGgtgataattttacttcttaccCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTATGGGAGAGTTCTGAAGCAGACCACCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATGCCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAGTATAACTAAAACACAATGAAAC--GTTACTTTACCTGACACTACGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTTTACAGTGCCAACCACAAATGCATCTACAGAATATAAAAGCCAGTTATTTAAAACAGGAGGGCAGGGTAT---------TTCCATAT--------AGAGAGTAAATTGGTACAACA-TTGTGGAGAGTAATCTGACAAAAACATGGAAAGCTTCgaaaagatatttattatttgataaaGAAATACTACTTTTAGAAATTCATCCTATGTCCAA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21138865 619 -  24206276 AATTCTTAACACTAACTCCCTCACCCTCCCCACTACTCGCTCCACAATCTGCTACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACAACTGCTGATTTAAGGCTAGCATCATCCAATCTATTGCTTATGGTATGGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATACCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAGTATAACTAAAACACAATGAAACGTGTTTCACTACCTGACACTATGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTTTACAGTGCCAACCACAAATGCATCTATAGAATATAAAAGCCAGTTATTTAAAACAGGAGGGCAGGGTAT---------TTCCATAT--------Agagagtaaactggtacaaca-ttgtggagagtaatctgacaaaaacatggaaagcttcaaaaagatatttattatttgataaagaaatactacttttagaaattcatcctatgtccaa
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54443721 586 +  91889043 AATTTTTAACAATAGCTTC------TCTCCTATCATCCTCCCCCAAATCTCCCAATTTTTCAGCAAAATGTCAAGTTCACATTCTGGTGTTTCCAAGATTCCACTGCCTCATGTGCGTGTTATGTGTATTATTTTTGAATGTGACAA-TTTAATTCTTCCCCATGGA----AAACGAGAGCACTGCTGATTCA-----------ACCTAATTTATGGCTCCTGGTAT-GGCCATATCTGAAACAGA-GGGCTTGAAGACCCTGATCCAGAGTCTTGGAATATAACATGCTGCCAGAGGCTATGCCTG------AGTTGCATGTACAACTAGTGTAATCAAAACACAATGAAGT--G----------TGATGCTCTGCTGTTCAAATCTGGAGTTTGCACAGGTTCCTTCAACGTGACACCAAATTAGAAACCC-TTACAGTGCCAAACCACAGCAGATCTAGAGAATATAAAAGCTAGTGATTCTTAAAAGGAGT---AGGTGT---------TTTCATATAATATGGAAAAGAGGACTCtggtacaagatttctggaaggtgatctgat--atacactcaaaacttt-gaaagatactta---tctgat-aaggaattttacttctagagatttattctatgtccaa
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I

a score=284837.000000
s hg38.chr15_KI270850v1_alt    372735 104 +    430880 ataatcacagatgcaggcaaaagctttaACTTCAGGTACTTCTTATAAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAAA--CTGAATGC----------------------------ca
s panTro4.chr15              80154687 104 +  99548318 ataatcacagatgcaggcaaaagctttaACTTCAGGTACTTCTTGTAAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACAAAAA--CTGAATGC----------------------------ca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10163644 104 +  10928107 ataatcacagacgcaggtaaaagctttaACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAAA--CCGAATGC----------------------------ca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17242499  93 - 121039945 ataatcacagatgcaggcaaaagctttaACTTCAGGTA---CTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAAA--CT------------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106717340 104 - 170124641 ataatcacagatgcaggcaaatgctttaACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAAA--CTGAAAGC----------------------------ca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108449931 104 - 171882078 ataatcacagatgcaggcaaatgctttaACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAGA--CTGAAAGC----------------------------ca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103217633 104 - 162156779 ATAATCACAGACGCAGGCAAATGCTTTAACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAGA--CTGAAAGC----------------------------CA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21139484 104 -  24206276 ataatcacagatgcaggcaaatgctttaACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAGA--CTGAAAGC----------------------------ca
i chlSab2.chr29             C 0 C 0
s mm10.chr7                  81394443 104 + 145441459 ATAAGCACAGATGTA-GCAAAGGTTTTAACTTGAGGTGCTCCTCATTAGTGTATAAAACAGATACTTATTTTTATCAG-----TCTGA--------ATT------------------------------------ATGGAAACCCTGAATTC----------------------------TA
i mm10.chr7                 I 1371 I 23
s canFam3.chr3               54444307 179 +  91889043 ataaccaaagatgta-gccaaagttttaCCTTTAGGTACTTCCTACTAATGTTTAAAATACACACTTATGTAAGCAAATGATCTCCAATAGTTTGGAATTCTTAACTTTTTTTtttttttttaagattttatttgacagaga--gtgagagcacgcatgtgcacaagcagggtgcaaaggca
i canFam3.chr3              C 0 C 0
e calJac3.chr6               22280072 200 + 158406734 I

a score=264393.000000
s hg38.chr15_KI270850v1_alt    372839 122 +    430880 gagg----------------------------------------------------------------------------------------------------------------------------ttaaccttttttgtatcatgaaccatttggcagtctgctaaaaccaat-aaaccttctaagaaaaatgtttcaaaacatataaaataGTAAtaatattgaaatagtaaataa----------atgtcaa
s panTro4.chr15              80154791 122 +  99548318 gagg----------------------------------------------------------------------------------------------------------------------------ttaaccttttttgtatcatgaaccatttggcagtctgctaacaccaat-aaaccttctaagaaaaatgtttcaaaacatataaaataGTAAtaatactgaaatagtaaataa----------atatcaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10163748 123 +  10928107 gagg----------------------------------------------------------------------------------------------------------------------------ttaaccttttttgtatcacgtaccatttggcagtctgctaaaaccaatgaaatcttctaagaaaaatgtttcacaacatataaaataGTAAtaatattgaaatagtaaataa----------atgtcaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17242592 121 - 121039945 --GG----------------------------------------------------------------------------------------------------------------------------ttaaccttttttgtattatgaaccatttggcagtctgctaaaaccaatgaaaccttctaagaaacatgtttcaaaacatataaaataGTAAtaatactgaaatagtaaataa----------atgtcaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106717444 124 - 170124641 gagg-------------------------------------------------------------------------------------------------------------------------ttcttaaccttttttgtatcatgaaccgtttggcagtctgctaaaacctatggaaac--ctaagaaaaatgtttctaaacatacaaaataGTAAtaatattgaaatagtaaataa----------atgtcaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108450035 124 - 171882078 gagg-------------------------------------------------------------------------------------------------------------------------ttcttaaccttttttgtatcatgaaccgtttggcagtctgctaaaacctatggaaac--ctaagaaaaatgtttctaaacatacaaaataGTAAtaatattgaaatagtaaataa----------atgtcaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103217737 123 - 162156779 GAGG-------------------------------------------------------------------------------------------------------------------------TTCTTAACCtttttt-tATCATGAACCGTTTGGCAGTCTGCTAAAACCTATGGAAAC--ctaagaaaaatgtttctaaacatacaaaatagtaataatattgaaatagtaaataa----------atgtCAA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21139588 124 -  24206276 gagg-------------------------------------------------------------------------------------------------------------------------ttcttaaccttttttgtatcatgaaccatttggcagtctgctaaaacctatggaaac--ctaagaaaaatgtttctaaatatacaaaataGTAAtaatattgaaatagtaaataa----------atgtcaa
i chlSab2.chr29             C 0 I 21
s canFam3.chr3               54444486 249 +  91889043 gagggagaagcagacttctcactgagcagggagcctgatgtggggcttgaccccaggaccttgagatcatgacctgatctgaaagcagacacttaactgtctgagccaccaagatgccccTGAAATTCTTAAC--TTTTTAAACCATGAACAATTTGGAAATCTCCTAAAGCCTAT-CAATG--TTGAGAATAATGTT---AAATATGTAAAATAATAgtaattttgaagtaatgaggagtatagacaacatttcaa
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I

a score=22794.000000
s hg38.chr15_KI270850v1_alt    372961 17 +    430880 ggtatgtacaatgcctg
s panTro4.chr15              80154913 17 +  99548318 gatatgtacaatgcctg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10163871 17 +  10928107 gatatgtacaatgcctg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17242713 17 - 121039945 gacatgtacagtgcctg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106717568 16 - 170124641 -atatgtacaagatgtg
i rheMac3.chr7              C 0 I 5
s macFas5.chr7              108450159 16 - 171882078 -atatgtacaagatgtg
i macFas5.chr7              C 0 I 5
s papAnu2.chr7              103217860 16 - 162156779 -ATATGTACAAGATGTG
i papAnu2.chr7              C 0 I 5
s canFam3.chr3               54444735 15 +  91889043 aatatgtgcaatgac--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e chlSab2.chr29              21139712 21 -  24206276 I

a score=268690.000000
s hg38.chr15_KI270850v1_alt    372978  91 +    430880 taaaggaatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
s panTro4.chr15              80154930  91 +  99548318 taaaggaatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10163888  91 +  10928107 taaaggaatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17242730  91 - 121039945 taaaggaatga-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctcaacttacagt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106717589  91 - 170124641 taaaggcatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i rheMac3.chr7              I 5 C 0
s macFas5.chr7              108450180  91 - 171882078 taaaggcatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i macFas5.chr7              I 5 C 0
s papAnu2.chr7              103217881  91 - 162156779 TAAAGGCATCA-ATATGAATTGTCTGATCATCCTATTGA-------------TACCAAATTATTAGGTCCTGCTAATATTGTGACTTGTTGCCTAAACTTACAGT
i papAnu2.chr7              I 5 C 0
s chlSab2.chr29              21139733  91 -  24206276 taaaggcatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i chlSab2.chr29             I 21 C 0
s canFam3.chr3               54444750 105 +  91889043 taaagaaatcagatataaagtgtctgaccatccaatggatgatgaagattattaccaaagaattaggccctgttactattgtgatttgttgccaacatttacaat
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I

a score=651546.000000
s hg38.chr15_KI270850v1_alt    373069 289 +    430880 taaaagaaatgcagctgggcttggtggctcacacctgtaatcccagcactttgggaggtcgaggcaggtggatcacaaggtcaggagacagaaaccatcctggctaacaatgtgaaacccagtctctattaaaaatacaaaaaattagccaggcatggcggtgggcgcctgcagtcccagctactcaggaagctgaggcaggagaatggcatgaacccggcaggcagagcttgcagtgagtggagatcgcaccac-tgcactccagcctgggtgacacagcgagactccg
s panTro4.chr15              80155021 290 +  99548318 taaaagaaatgcagctgggcttggtggctcacacctgtaatcccagcactttgggaggtcgaggcaggcggatcacaaggtcaggagatagagaccatcctggctaacaatgtgaaacccagtctctattaaaaatacaaaaaattagccaggcatggcggtgggcgcctgcagtcccagctactcaggaagctgaggcaggagaatggcgtgaacccggcaggcagagcttgcagtgagtggagatcgcaccacttgcactccagcctgggtgacacagcgagactccg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10163979 289 +  10928107 taaaagaaatgcggccgggtgtggtggctcatgcctgtaatcccagcactttgggaggtcgaggcgggcggatcacaaggtcaggagatagagaccatcctgactaacaaggtgaaacccactctctactaaaaatacaaaaaattagccgggcatggtggtgggcacctgcagtcccagctactcaggaggctgagacagaagaatggcgtgaacctggcaggcagagcttgcagtgagtggagatcgcaccac-tgcactccagcctgggtgacgcagcgagactccg
i ponAbe2.chr15_random      C 0 I 1751
s nomLeu3.chr6               17242821 289 - 121039945 taaaagaaacgcagccaggcgcggtggctcacgtctgtaatcccagcactttgggaggtcaaggcaggcagatcacaaggtcaagagatcgagaccatcctggctaacaaggtgaaacccagtctctactaaaaatacaaaaaattagccgggcatggtggtgggcgcctgcagtcccagctactcaggaggctgaggtaggagaatggcgtgaacccggcaggcagagcttgcagtgagtggagatcacaccac-tgcactctagcctgggtgacacagcgagactcca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106717680 286 - 170124641 taaaagaaatgcggccgggcacggtggctcacgcctgtaatctcagaattttgggaggccaaggcgggcaaatcacgaggtcaggagatggagaacatcctggctaacacggtgaaacccagtctctactaaaaatacaaaaaattagccgggcatagtggtgggcgcttgtagtaccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgcagtgagtggagatcacaccac-tgca---caaaaaaaaaaaaaaaaaaaaaccccc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108450271 289 - 171882078 taaaagaaatgcggccgggcacggtggttcacgcctgtaatctcagaattttgggaggccaaggcgggcaaatcacgaggtcaggagatggagaacatcctggctaacacggtgaaacccagtctctactaaaaatacaaaaaattagccgcgcatagtggtgggcgcttgtagtaccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgcagtgagtggagatcacaccac-tgcactccagcctgggcgacagaatgagactctg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103217972 289 - 162156779 TAAAAGAAatgcggccaggcacggtggctcacgcctgtaatctcagaattttgggaggccaaggcgggcaaatcacgaggtcaggagatggagaacatcctggctaacacggtgaaacccagtctctactaaaaatacaaaaaattagccgggcatagtgctGGGCgcttgtagtgccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgcagtgagtggagatcacaccac-tgcactccagcctgggcgacagaatgagactccg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21139824 289 -  24206276 taaaagaaatgcggccgggcacggtggctcacgcctgtaatctcagaattttgggaggccaaggcgggcaaatcacgaggtcaggagatggagaacatcctggctaacatggtgaaacccagtctctactaaaaatacaaaaaattagccgggcacggtggcgggcgcttgtagtaccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgcagtgagtggagatcacaccac-tgcactccagcctgggcgacagaatgagactcca
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e canFam3.chr3               54444855   0 +  91889043 C

a score=15842.000000
s hg38.chr15_KI270850v1_alt    373358 19 +    430880 tc----tcaaaaaaaaaaaaaaa
s panTro4.chr15              80155311 19 +  99548318 tc----tcaaaaaaaaaaaaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166019 19 +  10928107 tc----tcaaaaaaaaataaaaa
i ponAbe2.chr15_random      I 1751 C 0
s nomLeu3.chr6               17243110 19 - 121039945 tc----tcaaaaaaaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106717966 19 - 170124641 cc----aaaaaaaaaaaaaaaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108450560 23 - 171882078 tcACAGaaaaaaaaaaaaaaaaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103218261  6 - 162156779 tt-----------------acca
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21140113 16 -  24206276 tc-------accaaaaaaaaaaa
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e canFam3.chr3               54444855  0 +  91889043 C

a score=313264.000000
s hg38.chr15_KI270850v1_alt    373377 117 +    430880 aaaaaaaaaag----ctacgtttcagttaaacatcactgaacgtgaagatacaa-------gtttttacctgtctaaattattggaccccctgaattctatccatgtacccaggttaagaatcccATA
s panTro4.chr15              80155330 121 +  99548318 aaaaaaaaaaacaacctacgtttcagttaaacatcactgaacatgaagatacaa-------gtttttacctgtctaaattattggaccccctgaattctatccatgtacccaggttaaaaatcccATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166038 112 +  10928107 aaaaCAg--------ctacatttcagttaaacatcactgaatataaagatacaa-------gtttttacctgcctaaattattgga-cccctaaattctatccatgtacccaggttaagaatcccATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17243129 118 - 121039945 aaaaaaaaaaag---ctacgtttcagttaaacatcactgaacataaagatacaa-------gtttttacctgtctaaattattggaccccctgaattctatccatgtacccaggttaagaattccATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106717985 117 - 170124641 aaaaaaaaaag----ctacgtttcagttaaacatcactgaatataaagatacaa-------gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108450583 117 - 171882078 aaaaaaaaaag----ctacgtttcagttaaacatcactgaatataaagatacaa-------gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103218267 117 - 162156779 aaaaaaaaaag----ctacgtTTCAGTTAAACATCACTGAATATAAAGATACAA-------GTTTTTACCTGTCTAAATTATTGGACCCCCTGAATTCTATCCATGTAACCAGGTTAAGAATTCCATA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21140129 117 -  24206276 aaaaaaaaaag----ctacgtttcagttaaacatcactgaatataaagatacaa-------gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54444855 119 +  91889043 agatagaaaca----ctacatttcaggtaaacattggt-----taaagataaaataaagatgtattcacctgtccaaattcctagactctctgaattttctccatgaatctggatttagaatcccATA
i canFam3.chr3              C 0 I 213
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I

a score=665114.000000
s hg38.chr15_KI270850v1_alt    373494 278 +    430880 ATGCAggctgggtgcggtggctcacacctgtaatcccagcactttgggaggcaaaggtaggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctagaggctgaggcaggagaatcgcttgaacctgggaggaggaggttacagtgagccaagatcacgccactgcactccagcctgggcaagacagagcga
s panTro4.chr15              80155451 278 +  99548318 ATGCAggctgggtgcggtggctcacacctgtaatcccaacactttgggaggcaaaggtaggtggatcacttgaggtcagcagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagtcaggcgtggtggtggacacctgtaatctcagctactctagaggctgaggcaggagaatcgcttgaacctgggaggaggaggttacagtgagccaagatcacgccactgcactccaggctgggcaagacagagcga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166150 278 +  10928107 ATGCCggctgagtgcggtggctcacacttgtcattccagcactttgggaggcaaaggtaggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctaccaaaaatacaaacattagccaggcgtggtggtgggcacctgtaatcccagctgctctagaggctgaggcaggagaattgcttgaagctgggaggaggaggttacagtgagccaagatcacgctactgcactccagcctgggcaagatagagcga
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17243247 278 - 121039945 ATGCAggctgggtgcagtggctcatacctgtaatcccagcacttcgggaggcaaaggtaggtggatcactcgaggtcaggagctcaagatcagcctggccaatatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggtgggcacctgtaatcccagctactctagaggctgaggcaggagaatcgcttgaacctgggagaaggaggttacagtgagccaaaatcatgccactgcactccagcctgggcaagccagagcga
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106718102 278 - 170124641 ACACAggccgggtgcagtggctcatacctttaatcccagcactttgggaggcaaaggtgggtggatcacgtgaggtcaggagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctggaggctgaggcagaagaatcacttgaacctgggaggcggaggtaacagtgagccaagatcacgccactgcacttcatcgtgggcaaaacagagcaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108450700 278 - 171882078 ACACAggccgggtgcagtggctcatacctttaatcccagcactttgggaggcaaaggtgggtggatcacgtgaggtcacgagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctggaggctgaggcaggagaatcacttgaacctgggaggcggaggtaacagtgagccaagatcacgccactgcacttcagcctgggcaaaacagagcaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103218384 278 - 162156779 ACacaggccgggtgcaggggctcatacctttaatcccagcactttgggaggcaaaggtgggtggatcacgtgaggtcaggagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctggaggctgaggcaggagaatcacttgaacctgggaggcggaggtaacagtgagccaagatcacgccactgcactccagcctgggcaaaacagagcaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21140246 278 -  24206276 ACACAggccgggtgcagtggctcatacctttaatcccagcactttgggaggcaaaggtgggtggatcacgtgaggtcaggagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtagtgggcacctgtaatctcagctactctggaggctgaggcaggagaatcacttgaacctgggaggcagaggtaacagtgagccaagatcacgccactgcactccagtctaggcaaaacagagcaa
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e canFam3.chr3               54444974 213 +  91889043 I

a score=23933.000000
s hg38.chr15_KI270850v1_alt    373772 31 +    430880 gactccatc------------------aaaaaaaaaaaaaaaaaaaTCC
s panTro4.chr15              80155729 49 +  99548318 gactacatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166428 23 +  10928107 gactc--tc------------------------aaaaaaaaaaaaaTCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17243525 30 - 121039945 gactctgtc-------------------aaaaaaaaaaaaaaaaaaTCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106718380 23 - 170124641 gactccatt-------------------c-------aaaaaaaaaaTCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108450978 24 - 171882078 gactccatt-------------------c------aaaaaaaaaaaTCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103218662 23 - 162156779 gactccatt-------------------a-------aaaaaaaaaatcc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21140524 28 -  24206276 gactccata-------------------aaa--aaaaaaaaaaaaaTCC
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54445187 23 +  91889043 gtctctctc-------------------a----tgaagaagtaaaa---
i canFam3.chr3              I 213 C 0
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I

a score=559985.000000
s hg38.chr15_KI270850v1_alt    373803 254 +    430880 CATAATGCATCTATCTACACAGTAAAATGCTATGTAGCCTTGAAAAGGGATATAAAAAATTAACAC--AAAGATA------AAAGAGGCAAATA--------GTGTGTTCAaaatattt-----------aatat-------acacgtttg----------------aaaaaaaaaactggagagatacaccaaa---atgttaacaatagttatttctcagtagtaagatgacataa-tttttttttcctaattt--------------g-----------------------------------------------------cttttttttttttttttttttacagtgaacacattgtaacaag----------aaaaaaaa
s panTro4.chr15              80155778 247 +  99548318 CATAATGCATCTATCTACACAGTAAAATGCTATGTAGCCTTGAAAAGGGATATAAAAAATTAACACAGAAAGATA------AAAGAGGCAAATA--------GTGTGTTCAaaatattt-----------aatat-------acacgtttg----------------aaaaaaaaaactggagagatacaccaaa---atgttaacaatagttatttctcggtagtaagatgacataa-tttttttttcctg----------------------------------------------------------------------------tttttttttttttttttacagtgaacacattgtaacaag----------aaaaaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166451 278 +  10928107 CATAATGCATCTATCTACACAGTAAAATGCTATGTAGCCTTGAAAAGAGATATAAAAAATTAACACCGAAAGATAAAAGATAAAGAGGCAAATA--------GTGTGTTCAaaatattt-----------aatat-------acacgtttg---------------aaaaaaaaaaactggagagatacaccaaaatgatgttaacaatagttatttctgggtagtaagatgatgtaa--ttttttttcctaattt--------------gtct------------------gtt---ttgttct-------------------ttttttttttttttttttttaacagtgaacacattgtaacaag----------aaaaaaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17243555 276 - 121039945 CATAATAAATCTATCTACACAGTAAAATGCTATGTAGCCTTGAAAAGAGATATAAAAAATTAACACAGAAAGATAAAAGATAAAGAGGCAAATA--------GTGTGTTCAaaatattt-----------aatat-------acacgtttg--------------aaaaaaaaaaaactggagagatacaccaaa---atgttaacaatagttatttctgggtagtaagatgacgtaa--ttttttttcctaattt--------------gtct------------------gtt---ttcttc--------------------atttatttatttatttattttacagtgaacatattgtaacaag---------aaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106718403 290 - 170124641 CATAATGCATCTATCTACACAATAAAATGCTACGTAGCCTTGAAAAGAGATATAAAAAATAAACACAGAAAGATAAAAGATAAAGAGGCAAACA--------GTGTGTTCAAAAGAGTT-----------AATAT-------ACACGTTTGGG-----AAAAAAAAAaaaaaaaaaactggagagatacaccaaa---atgttaacaatagttatttctgggtagtaagatgacgtgcttttttttcccctaattt--------------gtct------------------gttttcttcttc--------------------ttcttttttttttttttttttacagtgaacatactgtaacaag---------aaaaaaaaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108451002 286 - 171882078 CATAATGCATCTATCTACACAATAAAATGCTACGTAGCCTTgaaaagagatatgaaaaataaacacagaaagataaaagataaaGAGGCAAACA--------GTGTGTTCAAAAGAGTT-----------AATAT-------ACACGTTTGGG------AAAAAAAAaaaaaaaaaactggagagatacaccaaa---atgttaacaatagttatttctgggtagtaagatgacgtgattttttttcccctaattt--------------gtct------------------gtt---ttcttc--------------------tttttttttttttttttttttacagtgaacatactgtaacaag---------aaaaaaaaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103218685 303 - 162156779 cataatgCATCTATCTACACAATAAAATGCTACGTAGCCTtgaaaagagatataaaaaataaacacagaaagataaaagataaagaggcaaaca--------gtgtgttcaaaagaGTT-----------AATAT-------ACacgtttggggaaaaaaagaaaaaaaaaaaaaaactggagagatacaccaaa---atgttaacaatagttATTTCTGGGTAGTAAGATGACGTGATTTGTTTTCCCctaattt--------------gtct------------------gttttcttcttct------------ttttttttttttttttttttttttttttacagtgaacatactgtaacaag---------aaaaaaaaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21140552 326 -  24206276 CATAATGCATCTATCTACACAATAAAATGCTACGTAGCCTTGAAAAGAGATATAAAAAATAAACACAGAAAGATAAAAGATAAAGAGGCAAACA--------GTGTGTTCAAAAGAGTT-----------AATAT-------ACACGTTTGGA------AAAAAAAAaaaaaaaaaactggagagatacaccaaa---attttaacaatagttatttctgggtagtaagatgacgtgattttttttttcctAATTT--------------GTCTAGGTAGTAAGATGACGTGAttttttttttccctaatttgtctgttttctttttttttttttttttttttttACAGTGAACATACTGCAACAAG----------AAAAAAAA
i chlSab2.chr29             C 0 C 0
s mm10.chr7                  81394570 253 + 145441459 CATAATGCTTCTATTTACATAGCAGAATGTTATACAAACCtataaa---atataaaaattaataaGAGAAAAAGG-AAGCGAAATGGGGAATTA--------ACAT-TCTGAAAGACTT-----------CATGTAGATGAAACCTGTATG---------------TTAGAGAGATACTGG-GAGATTGATCAAA---ATGTCTGTAATAGTTAT---------GTACAATG-------------TCTCTCAATTTTGGGGGGGAGGGGAGTCT------------------ATT----------------------------------------------TTCTACA---AACCTTTTATAACAAGCATTACTAGAAGAAAAAA
i mm10.chr7                 I 23 C 0
s canFam3.chr3               54445210 225 +  91889043 -----------tctttacaaaaaaaaaGTCAATG--------------ATTATA--------------AAAGATAAAAGAGAAAGAAGCAAATCATCATGTTGTGTGTTCACAAAGCTTTCAGTTTAATAAatat-------atatgttag-------------------aaaaatactgg----gtatgctaaa---atgtt---aatggttatccctgagtactgggattacacaggattattt-------ttt--------------gtct------------------gtt-----------------------------------ttcttCAAATGTTTTACCATAAACACATTGAAACAAG----------AAAAACA-
i canFam3.chr3              C 0 C 0
e calJac3.chr6               22280072 200 + 158406734 I

a score=204958.000000
s hg38.chr15_KI270850v1_alt    374057 64 +    430880 TGCAAGCTATTAAACTGGGTAAGGTGAC--------------------AACATCCCCTAAATAAAC--TTGAGTAGTT----------TTTGCAGA-
s panTro4.chr15              80156025 64 +  99548318 TGCAAGCTATTAAACTGGGTAAGGTGAC--------------------AACATCCCCTAAATAAAC--TTGAGTAGTT----------TTTGCAGA-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166729 64 +  10928107 TGCAAGCTATTAAACTGGGTAAGGTGAT--------------------AACATCCCCTAAATAAAC--TTGAGTAGTT----------TTTGCAGA-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17243831 62 - 121039945 TGCAAGCTATTAAGCTGGGTAAGGTGAC--------------------AACATCCCCTAAATAAAC----GAGTAGTT----------TTTGCAGA-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106718693 66 - 170124641 TGCAAGCTATTAAACTGGGTAAGGTGAC------------------TTAACATCCCCTAAATAAAC--TTGAGTTGTT----------TTTGCAGA-
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108451288 66 - 171882078 TGCAAGCTATTAAACTGGGTAAGGTGAC------------------TTAACATCCCCTAAATAAAC--TTGAGTTGTT----------TTTGCAGA-
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103218988 66 - 162156779 tgcaagctaTTAAACTGGGTAAGGTGAC------------------TTAACATCCCCTAAATAAAC--TTGAGTTGTT----------TTTGCAGA-
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21140878 66 -  24206276 TGCAAGCTATTAAACTGGGTAAGGTGAC------------------TTAACATCCCCTAAATAAAC--TTGAGTTGTT----------TTTGCAGA-
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22280272 82 + 158406734 TGTAAGTTATTAAACTGGACAAGGTGACTTAACTGGACAAGGTGACTTAACATTCCCTAAATAAA----TGAGTATTT----------TTTGCAGC-
i calJac3.chr6              I 200 C 0
s mm10.chr7                  81394823 81 + 145441459 TACTTCTTAGTAAATAGGGTAAGGTGCT-------------CAGATTTAACACTCTCCAAGCAAAT--TTGCtttgtttgtttgtttgtttgCAAA-
i mm10.chr7                 C 0 I 1715
s canFam3.chr3               54445435 75 +  91889043 TACAGGCTATTAAACAGGGTAAGGTAAC------------TAAGATTTAATATTCCCTAAATAAAAAGTCTAAAAATT----------TTTAAACAA
i canFam3.chr3              C 0 C 0

a score=289553.000000
s hg38.chr15_KI270850v1_alt    374121 82 +    430880 TAAAAGCCCATATT---AGATTTCAAATTTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGATCATA----AATTTAAATAAGCCA-----
s panTro4.chr15              80156089 82 +  99548318 TAAAAGCCCGTATT---AGATTTCAAATTTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGATCATA----AATTTAAATAAGCCA-----
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166793 82 +  10928107 TAAAAGCCCATATT---AGATTTCAAATTTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGATCATA----AATTTAAATAAGCCA-----
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17243893 82 - 121039945 TAAAAGCCCATATT---AGATTTCAAATCTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGATCATA----AATTTAAATAAGCCA-----
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106718759 82 - 170124641 TAAAAGCCCATATT---AGATTTCAAATTTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTAAATAAGCCA-----
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108451354 82 - 171882078 TAAAAGCCCATATT---AGATTTCAAATTTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTAAATAAGCca-----
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103219054 82 - 162156779 TAAAAGCCCATATT---AGATTTCAAatttg--acatcaggagttcaatgacaaaatgaaattaggatcata----aatttaaataagcca-----
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21140944 82 -  24206276 TAAAAGCCCATATT---AGATTTCAAATCTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTAAATAAGCCA-----
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22280354 75 + 158406734 TAAAAGCCCATATT---ATATTTCAAATTTG--ACATCAGGAATTCAATG---AAACGAAATCAGGATC--------ATTTAAATAAGCAa-----
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81396619 77 + 145441459 taaaagaaaataat---aaatT-----TTTG------CATGAGACCAATGACAAAATGAAATTAGGATGATAATACAATGTAAACATACCA-----
i mm10.chr7                 I 1715 I 2264
s canFam3.chr3               54445510 91 +  91889043 GAAAAATCCATGTTAAGAGATTTTAAACTTCACACATTATGAGTTCAATGACAATACAAAATTAGAACTACA-----ATTTAAATACAACAaacca
i canFam3.chr3              C 0 C 0

a score=261114.000000
s hg38.chr15_KI270850v1_alt    374203 76 +    430880 CAAAACATTAAAAATAAGAGTGACTTTGGAGGGCATTTAGCGGAAGCCCTTTATTTCACAGTAGGAAGACCCT-CCC
s panTro4.chr15              80156171 76 +  99548318 CAAAACATTAAAAATAAGAGGGACTTTGGAGGGCATTTAGCGGAAGCCCTTTATTTCACAGTAGAAAGACCCT-CCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166875 76 +  10928107 CAAAACATTAAAAATAAGAGGGACTTTGGAGGCCATTTAGTGGAAGCCCTTTATTTCACAGTAGAAAGACCCT-CCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17243975 77 - 121039945 CAAAACTTTAAAAATAAGAGGGACTTTGGAGGCCATTTAGTGGAAGCCCTTTATTTCACAGTAGAAAGACCCTCCCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106718841 76 - 170124641 CAAAACATTAAAAATAAGAGGGACTTTGGAGGCCATTTAGTGGAAGTCCTTTATTTCACAGTAGAAAGACCCT-CCG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108451436 76 - 171882078 caaaacattaaaaataagagggactttggaggccatttagtggaagtcctttatttcacagtagaaagaccct-ccg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103219136 76 - 162156779 caaaacattaaaaataagaggGACTTTGGAGGCCATTTAGTGGAAGTCCTTTATTTCACAGTAGAAAGACCCT-CTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21141026 76 -  24206276 CAAAACATTAAAAACAAGAGGGACTTTGGAGGCCATTTAGTGGAAGTCTTTTATTTCACAGTAGAAAGACCCT-CCG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22280429 76 + 158406734 caaaacattaaaaataagaagggctttggagtccatttagtgcaagccctttatttcacagTAGAAAGACCCT-TTC
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54445601 74 +  91889043 cagaatattaaaaataaaaggaactttggagtccacttagtccacgcctctcacttcacagcagaaactctct-c--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81396696 2264 + 145441459 I

a score=1057656.000000
s hg38.chr15_KI270850v1_alt    374279 292 +    430880 CCCAGTACTAATTCCAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCCCTCTACCCCCATAAATGTACTCATTTATTCTCCAGACAAAATGATGCAACATATCTACGTTTGGAAACTAGACCACATTCTCCAAAGTGGAAGTAATACAGACTGTGA-TCAAGACACAACCAACAGTTAAGCTTTCAGCGGCAAAGTCTGGACATTCCAGCAGATGGGGGTGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-C-ACTTTTCAA-----GGGAGAAAAAGAG
s panTro4.chr15              80156247 293 +  99548318 CCCAGTACTAATTCCAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCCCTCTACCCCCATAAATGTACTCATTTATTCTCCAGACAAAATGATGCAACATATCTACGTTTGGAAACTAGACCACATTCTCCAAAGTGGAAGTAATCCAGACTGTAA-TCAAGACACAACCAACAGTTAAGCTTTCAGCGGCAAAGTCTGGACATTCCAGCAGATGGGGGTGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTACTTTTCAA-----GGGAGAAAAAGAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10166951 293 +  10928107 CTCAGTACTAATTCCAGAAGCCTCAAATGCTGATCTCTGCATAGTTCCCTCTATCCCCATAAATGTACTCATTTATTCTCCAGACAAAATGATGCAACATATCCACGTTTGGAAACTAGACCACATTCTCCAAAGTGGAAGTAATCCAGACTGTGA-TCAAGACACAACCAACAGTTAAGCTTTCAGCGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAATTTACATGAAACATCACATTCT-CTACTTTTCAA-----GGGAGAAAAAGAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17244052 293 - 121039945 CCCAGTACTAATTCCAGAAGCCTTAAGTGCTCATCTCTGCATAGTTCCCTCTACCCCCATAAATGTACTCATTTATTCTCCAGACAAAATGATGCAACATATCTACGTTTGGAAACTAGACCACATTCTCCAAAGTGGAAGTAATCCAGACTGTGA-TCAAGACACAACCAACAGTTAAGCTTTCAGCGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTACTTTTCAA-----GGGAGAAAAAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106718917 293 - 170124641 CCCAGTACTAAATCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCACTCTACCCCCATAAATGTACTCATTTATTCTCTAAACAAAATGATGCAACATATCTACGTTTGGAAACTAGACCATATTCTCCAAAGTGGAAGTAATCCAGACTGTGA-TTAAGACATAACCAACAATTAAGCTTTCAGTGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTATTTTTCAA-----GGGAGAAAAAGAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108451512 294 - 171882078 cccagTACTAATTCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCACTCTACCCCCATAAATGTACTCATTTATTCTCTAAACAAAATGATGCAACATATCTACGTTTGGAAACTAGACCATATTCTCCAAAGTGGAAGTAATCCAGACTGTGA-TTAAGACACAACCAACAATTAAGCTTTCAGTGGCAAAGCCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAACTTAAATGAAACATCACATTCTCCTATTTTTCAA-----GGGAGAAAAAGAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103219212 293 - 162156779 CCCAGTACTAATTCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCACTCTACCCCCATAAATGTACTCATTTATTCTCTGAACAAAATGATGCAACATATCTACGTTTGGAAACTAGACCATATTCTCCAAAGTGGAAGTAATCCAGACTGTGA-TTAAGACACAACCAACAATTAAGCTTTCAGTGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTAACATGCAGAATAAgactttcaaaatttaaatgaaacatCACATTCT-CTATTTTTCAA-----GGGAGAAAAAGAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21141102 288 -  24206276 CCCAGTACTAATTCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTT-----TACCCCCATAAATGTACTAATTTATTCTCTAAACAAAATGATGCAATATATCTACGTTTGGAAACTAGACCATATTCTCCAAAGTGGAAGTAATCCAGACTGTGA-TCAAGACACAACCAACAATTAAGCTTTCAGTGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTTAAAATTTAAATGAAACATCACATTCT-CTATTTTTCAA-----GGGAGAAAAAGAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22280505 292 + 158406734 CCCAGTGCTAATTCCAGAAGCCTTAAGTGCTGATTTCTGCATAGTTCCCTCTACCCCCATAAATGTACTCATTTATTCTTCATACAAAATGATGCAACACATCTACATTTGGAAACTAGAACACATTCTCCAAAGTGGAAGTAATCCAGACTGTGA-TCAAGACACAACCAACAGTTAAGCTTTCAGTGGCAAAACCTGGACATTCCAGCAGATGGGGATGGTACTATGCAGAATAAGACTTTCAAAATTTAAATGAAA-ATCATATTCT-CTATTTTTCAA-----GGGAGAAAAAGAG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81398960 271 + 145441459 CCTAATACTGATTTCTGAAACCTTTACC-TTCATCTCTG---AGTGGCCTCCTAGCCTGTAACGTTATTCATTTATTTTTCAGTCAAAA-GAGGTAAAATATTTACATTTGGAAGTTGAAACAT--------------AAGTAATTTTGTCAGTGA-TTAAGACATGATC-------AAGTTCTTAGTAGCACAACTCTCACAGTCCAGCAGATGGGGATGGTGCCACACAGACCAAGGCTTTTAAAGATCGAATTCAACACCA-GTCTT-CAGTTTCACAAATAAGGTGAGAAAAAGAA
i mm10.chr7                 I 2264 C 0
s canFam3.chr3               54445675 277 +  91889043 ctTGGTGCAGATTCTGG---CTTTGACCCTTGACCTCTGCACAGCT---------CCCATCACTGGACCTGCTGCTTCTTCAGTCAGAAAGAAATACAACACCTACATTCAGAAGGTGGAGTGCACACACTACAGTGGGAGTAGTCTTACCTGTGGCTCAAAACATCATCAAGCCTTCA-CTTTAAGTGGCAAAGCCCTGCCCTTCCAGCAGATGGGGATGGCATCTCACAGATCAAGGGTTTTA-----TAAATTCAACCTCAAAAACC-CTACTTTACAAA----GTGAGAAAGAAAG
i canFam3.chr3              C 0 I 1918

a score=694670.000000
s hg38.chr15_KI270850v1_alt    374571 238 +    430880 C-AGAAAACTTATTTTTGAAGTCCAGGAAGAACTAGGCAACTTACAACTATCACCACATTCctcaaaacaaccccatggagaagacaggcattatatcccttttacaagcattaaagccatggcacaaaacaggtgaagcaa-tttgaccaa---------gCTAAGCACTC--ATCTCATTCAAAACCCGAGCCCTTCCCCCACCATGCCCTTTATACAATTATATTGTAAAATTCCATTTTGT--TTTTTA
s panTro4.chr15              80156540 238 +  99548318 C-AGAAAACTTATTTTTGAAGTCCAGGAAGAACTAGGCAACTTACAACTATCACCACATTCCTCAAAACAACCCCATGGAGAAGACAGGCATTACATCCCTTTTACAAGCATTAAAGCCATGGCACAAAACAGGTGAAGCAA-TTTGACCAA---------GCTAAGCACTC--ATCTCATTCAAAACCCAAGCCCTTCCCCCACCATGCCCTTTATACAATTATATTGTAAAATTCCATTTTGT--TTTTTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10167244 237 +  10928107 C-AGAAAACTTATTTTTGAAGTCCAGGAAGAActaggcaacttacaactatcaccacattcctcaaaacaaccccatggagaagacaggcattacatccattttacaagcattaaagccatgacacaaaaaaggcgaagcaa-tttgaccaa---------gCTAAGCACTC--ATCTCATTCAAAACCCAAGCCCTTCACCC-CCATGCCCTTTATACAATTATATTGTAAAATTCCATTTTGT--TTTTTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17244345 238 - 121039945 C-AGAAAACTTATTTTTGAAGTTCAGGAAGAActaggcaacttacaactatcaccacattcctcaaaacaaccccatggagaagacaggcattacatccattttacaagcattaaagccatggcacaaaaaaggtgaagcaa-tttgaccaa---------gCTATGCACTC--ATCTCATTCAAAACCCAAGCCCTTCCCCCACCATGCCCTTTATACAATTATATTGCAAAATTCCATTTTGT--TTTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106719210 237 - 170124641 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAActaggcaacttacaactatcaccacattcctcaatacaaccccatggagaagacaggcattacatccattttacaagcattaaagccatggcacaaaaaaggtgaagcaa-tttgaccaa--------------gcactcagATCTCACTCAAAACCCAAGCCCTTCCCCAACCATGCCCTTTATACAGTAATACTGTAAAATTCCATCTTGTTGTTTTTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108451806 237 - 171882078 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAActaggcaacttacaactatcaccacattcctcaatacaaccccatggagaagacaggcattacatccattttacaagcattaaagccatggcacaaaaaaggtgaagcaa-tttgaccaa--------------gcactcagATCTCACTCAAAACCCAAGCCCTTCCCCAACCATGCCCTTTATACAGTAATACTGTAAAATTCCATCTTGTTGTTTTTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103219505 229 - 162156779 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAACTAGGCAACTTACAACTATCACCACATTCCTCAATACAACCCCATGGAGAAGACAGG--------CCATTTTACAAGCATTAAAGCCATGGCACAAAAAAGGTGAAGCAA-TTTGACCAA--------------GCACTCAGATCTCACTCAAAACCCAAGCCCTTCCCCAACCATGCCCTTTATACAATAATACTGTAAAATTCCatcttgttgtttttt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21141390 237 -  24206276 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAActaggcaacttacaactatcatcacattcctcaatacaaccccatggagaagacaggcattacatccattttacaagcattaaagccatggcacaaaaaaggtgaagtaa-tttgaccaa--------------gcactcagATCTCACTCAAAACCCAAGCCCTTCCCCAACCATGCCCTTTATACAATAATACTGTAAAATTCCATCTTGTTGTTTTTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22280797 249 + 158406734 C-AGAAAACTTGTTTTTGAAGTCCAAGAGGAGCTAGGCAACGTACAACTATAACCAAATtcctcaaaacaaccccatggagaagacaggtattacatccattttataagcactgaagtcacggcacagaagaggtgaagcaa-tctgaccaaggtcacacagctgagcactcagatcccattcaaaacccaagcccttaccccaccatgccctttatacaattatattgtAAAATTCCatttatt--tattta
i calJac3.chr6              C 0 I 320
s mm10.chr7                  81399231 186 + 145441459 CAAGAAAATTAACTTTTTAAGTTTAAG-AGGGCTATAAAACTTATAA-------------------------ACCATGGAgcaggaaggtgtcatgcccattttataaa---------tatgattcaaaagaagtaaagcaatttttaccaa------------ggtcacatagGTCCCATT--AAACCAATGTCACTTTGTCCTGATGTTCTTTA--------------AAGGTT--ATTTAAT--TTTGTA
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54445952 1918 +  91889043 I

a score=15772.000000
s hg38.chr15_KI270850v1_alt    374809 7 +    430880 AAATAGC
s panTro4.chr15              80156778 7 +  99548318 AAATAGC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10167481 7 +  10928107 AAAAAGC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17244583 7 - 121039945 AAAAAGC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106719447 7 - 170124641 AAAAAGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108452043 7 - 171882078 AAAAAGC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103219734 7 - 162156779 aaaaagc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21141627 7 -  24206276 AAAAAGC
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81399417 0 + 145441459 C
e calJac3.chr6               22281046 320 + 158406734 I
e canFam3.chr3               54445952 1918 +  91889043 I

a score=277599.000000
s hg38.chr15_KI270850v1_alt    374816 94 +    430880 ATGCAAGTAATAAGTAAAAGATGATCACTTTCACATCTCGGCAGCGTTCCTTGTCCTCAATCCTACTCTCTTCTCTGAATGAACAGTTTGAG--AT
s panTro4.chr15              80156785 94 +  99548318 ATACAAGTAATAAGTAAAAGATGATCACTTTCACATCTCGGCAGCGTTCCTTGTCCTCAATCCTACTCTCTTCTTTGAATGAACAGTTTGAG--AT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10167488 94 +  10928107 ATGCAAGTAATAAGTAAAAGATGATCACTTTCACATCTCTGCAACATTCCTTGTCCTCAATCCTACTCTCTTCTCTGAATGAATAGTCTGAG--AT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17244590 94 - 121039945 ATGCAAGTAATAAGTAAAAGATGATCACTTTCACATCTCTGCAATGTTCCTTGTCCTCAATCCTACTCTCTTCTCTGAATGAACAGTTTGAG--AT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106719454 94 - 170124641 ACACAAGTAATAAGTAAAAGATGCTCACTTTCACTTCTCTGCAATGTTCCTTGTCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTCGAG--AT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108452050 94 - 171882078 ACACAAGTAATAAGTAAAAGATGCTCACTTTCACTTCTCTGCAATGTTCCTTGTCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTCAAG--AT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103219741 94 - 162156779 atacaagTAATAAGTAAAAGATGCTCACTTTCACTTCTCTGCAATGTTCCTTGTCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTCGAG--AT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21141634 94 -  24206276 ATACAAGTAATAAGTAAAAGATGCTCACTTTCACTTCTCTGCAATGTTCCTTGTCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTTGAG--AT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22281366 90 + 158406734 ATACAAGTAAAAAGTAAACGACGATCACTTTCACATCTCTGTAACATTCCTTGTCCTCAAGCCTACTCTATTCTC----TGAACAGTTTGAG--AT
i calJac3.chr6              I 320 C 0
s mm10.chr7                  81399417 76 + 145441459 ----AAGTCACAAATAAAGATT-----CCTTCGTA-ATCTGCAGTGTTTCTCATCCTCAG---------CTTGTGTTGA-GAAAAGTTTAAAGCAT
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54445952 1918 +  91889043 I

a score=150166.000000
s hg38.chr15_KI270850v1_alt    374910 39 +    430880 ATTCCTTTTGTACCATTTCC----------------------------------TATGCATTTGTGAacactg
s panTro4.chr15              80156879 39 +  99548318 ATTCCTTTTGTACCATTTCC----------------------------------TATGCATTTGTGAacactg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10167582 39 +  10928107 ATTCCTTTTGTACCATTTTC----------------------------------TATGCATTTGTGAACACTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17244684 39 - 121039945 ATTCCTTTTGTACCATTTTC----------------------------------TATGCATTTGTGAacactg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106719548 39 - 170124641 ATTCCTTTTTTACCATTTTC----------------------------------TATGCATTTGTGAACAATG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108452144 39 - 171882078 ATTCCTTTTTTACCATTTTC----------------------------------TATGCATTTGTGAacactg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103219835 39 - 162156779 ATTCCTTTTGTACCATTTTC----------------------------------TATGCATTTGTGAACACTG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21141728 39 -  24206276 ATTCCTTTTGTACCATTTTC----------------------------------TATGCATTTGTGAacactg
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22281456 39 + 158406734 ACTCCTTTTATACCATTTTC----------------------------------GATGcatttctgaacactg
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81399493 73 + 145441459 AGTCCTTTTATGGCATTTTCTTTGTATCCtttttaaaaagattttatttatttttatgtatatgagtacactg
i mm10.chr7                 C 0 I 153
s canFam3.chr3               54447870 39 +  91889043 ATTTCTTTTATATCATTTTC----------------------------------TTTGCATTTGTGAACACCT
i canFam3.chr3              I 1918 C 0

a score=830707.000000
s hg38.chr15_KI270850v1_alt    374949 239 +    430880 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtt------aaaaaATACACTACTTAATAAATGAGAATCTTGAgtgtcaggcactagctaggcaaccaggatataagtgaag-----aaaaaaaaaaaagttacagctctt--gtctttttgggtttactattgtagtggtagagaa---aaacctgataatggtgtaagtgataaagtataattgtgagcaaggtgctaggaaggaa
s panTro4.chr15              80156918 241 +  99548318 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtt------aaaaaATACACTACTTAATAAATGAGAATCTTGAGTGTCAGGCACTAGCTAGGCAACCAGGATATAAGTGAAG---AAAAAAAAAAAAAAGTTACAGCTCTT--GTCTTTTTGGGTTTACTATTGCAATGGTAGAGAA---AAACCTGATAATGGTATAAGTGATAAAGTATAATTGTGAGCGAGGTGCTAGGAAGGAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10167621 239 +  10928107 TTACCAACACTGTTACTATTCAAC-TTTAAGTTCTGCCAATATGCTAGGTT------AAAAAATACACTACTTAATAAATGAGAATCTTGAgtgtcaggcactagctaggcaaccaggatataagtgaag-----aaaaaaaaaacagttacagctctt--gtctttttgggtttactattgtagtggtagagaa---aaacctgataatggtataagtgataaagtataattgtgagtgaggtgctaggaaggaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17244723 244 - 121039945 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtt------aaaaaATACACTACTTAATAAATGAGAATCTTGAGTGTCAGGCACTAGCTAGGCAACCAGGATATAAGTGAAGAAAAAAAAAAAAAAACAGTTACAGCTGTT--GTCTTTTTGGGTTTGCTATTGTAGTGGTAGAGAA---AAACCTGATAATGGTGTAAGTGATAAAGTATAATTGTGAGTGAGGTGCTAGGAAGGAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106719587 241 - 170124641 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtc------aaaaaATACACTAATTAATAAATGAGAATCTTGAGTGTCAGGCACTAGCTAGGCAACCAGGATATAAGTGAAG---AAAAAAAAAAAACAGTTACAGCTCTT--GTCTTTTTGGGGTTACTATTGTAGTGGTAGAGAA---AAACCTGATAATGGTATAAGTGATAAAGTATAATTGTGAGTGAAGTGCCAGGAAGGAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108452183 244 - 171882078 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtc------aaaaaATACACTAATTAATAAATGAGAATCTTGAGTGTCAGGCACTAGCTAGGCAACCAGGATATAAGTGAAGAAAAAAAAAAAAAAACAGTTACAGCTCTT--GTCTTTTTGGGGTTACTATTGTAGTGGTAGAGAA---AAACCTGATAATGGTATAAGTGATAAAGTATAATTGTGAGTGAGGTGCCAGGAAGGAA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103219874 243 - 162156779 TTACCAACACTGGTACTATTCAAC-TTTAAGTTCTGCCAATATGATAGGTC------AAAAAATACACTAATTAATAAATGAGAATCTTGAGTGTCAGGCACTAGCTAGGCAACCAGGatataagtgaag-aaaaaaaaaaaaaacagttacagCTCTT--GTCTTTTTGGGGTTACTATTGTAGTGGTAGAGAA---AAACCTGATAATGGTATAAGTGATAAAGTATAATTGTGAGTGAGGTGCCAGGAAGGAA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21141767 240 -  24206276 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtc-----aaaaaAATACACTAATTAATAAATGAGAATCTTGAGTGTCAGGCACTAGCTAGGCAACCAGGATATAA--GAAA---AAAAAAACAAAACAGTTACAGCTCTT--GTCTTTTTGGGGTTACTATTGTAGTGGTAGAGAA---AAACCTGATAATGGTATAAGTGATAAAGTATAATTGTGAGTGAGGTGCCAGGAAGGAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22281495 237 + 158406734 ttaccaacactggtactatccaacttttaagttctgccagtatgatagatt------aaaaTATACGCTACTTAATAAATGAGAATCTTGAGTGTCAGGTACTAGCAAGGCAACCAGGGTATGA--TAAG------AAAAAAAAACAGCTACGGCTCTT--GTCTTCTTGGGCTTAGTAGTGTAGTGGTAGAAAA---AAATCTGATAATGGTATAAGTGATAAAGTGTAATTGTGAGTGAAGTGCTAGGAAGGAA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81399719 201 + 145441459 TTTCCAACACTGGTATGACTTTAC-TGTAAGTTCCATGAACATTATAGGCT------ACAAAAGACTTTAATGACT------GAATTTTGTATATTAGGCATTAGGAAAGCAAT-------TAACGGAGG----------AAAAACAGCTTCAAGTCTT--GATATCATGGATTTACAAGTTTTGTGGTAGACAC---AAACTAAATAATCACACAAATG--------------------AGGTGTTTGGAACAGA
i mm10.chr7                 I 153 C 0
s canFam3.chr3               54447909 228 +  91889043 TTACCAACACTGGTGTTATCCAAT-------TTCTGTCAATGTGTTAGGTTTAAAAAAAAAAAAAAAGTACT---TAAGTGAGATTCTTATGTGTCAGGTACCAGCTA----------ATATGA--TAAG-----GAAGAAAAAACAGCTACAGCTCTTACACCTTTTATAGATTACAAGTCTAGAGGTGGAACAGTCAATCTAAAGAATCATACAAGTGATGAACTGCCA-TGTGAGTGAAGTGCTAAGAGGAAA
i canFam3.chr3              C 0 I 335

a score=38111.000000
s hg38.chr15_KI270850v1_alt    375188 16 +    430880 acagacatcaggataC
s panTro4.chr15              80157159 16 +  99548318 ACAGACATCGGGATAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10167860 16 +  10928107 acagacatcaggataC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17244967 16 - 121039945 ACAGACATCAGGATAC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106719828 16 - 170124641 AGAGACATCAGTATAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108452427 16 - 171882078 AGAGACATCAGTATAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103220117 16 - 162156779 AGAGACATCAGTATAC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21142007 16 -  24206276 AGAGACATCAGTATAC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22281732 16 + 158406734 AGAGAAATCAGTAAAC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81399920 16 + 145441459 TACGGAACTAGAGAAG
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54448137 335 +  91889043 I

a score=4204206.000000
s hg38.chr15_KI270850v1_alt    375204 1250 +    430880 AAAAGTATGTAAGGTGGTTTCTGG-CCTAATA-GGGGAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAACCTCATTTGGAATGTTAATCTAATTTGATTGGAAGGTTGAAGCATTTTTTTCAGATACAAAAAAA--AAAAAAAGCCACTAGCTATCAATTTTCAGTTTATATCCTTTGCC--C----TCTT-----TAAGAATGAGTTCTTATACTGTGGCTTTTCCTTTACATCAATAAGCCAGTACTTATTGTCCTCTAGAAAGAG-AAATACC---CTAAAA----GAAAGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACTATGTTAAAAGTGCTTTAAACTCTAG-ACTATTTACAGAGGCCTCT-AGTTTTAAATG-TTATTCCCCTTT---------------AAAAAAAATTACATAAAATAAATTTGATCTCTCC----TTCTCTGCGTTTTTGGTCAGAACCAAAAGTTACCTAAGCTACATTTTTGTCCAGGTCAGCCAGATTGCTGGT-AAAAACT---AACTTCAATCAATCTGCATGAAAATGAGTAGACCACCTACA-GTTAGTTTGTATTTCTGTGTTCATCGGGAAAGAATCTAAAGAAGTTGTAGGTTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATACAGTGCACATACACTCCCCTCTATACTTAGCGACATGGAATTGCACAGGTGTGAATTCAAGACGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTTAAAAGTTGCTAG-TAAGGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCCCCAAGGGATTTTATTCATTAGGAACTAGATGACAATGAATTAACACACTACATA----------CAACTT-TGCAAC-AGAGAAGG-AATTGCAATTGTCTTTAAGACA-G------TTTCAATAGTTGCC-----ACCCCCTAGTTGT------AAAAAAGATTATCAGGAAATTC----AACATAG-GAAAAGATTTAAAAGACTAACA------------------------G-----AAAAAATAAC--------TGTTCTACTTATAAAGAAAATGGGAATTAAAATGAGAATTCTGC-TTACCAAAACTGAAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAA-TTTTTTCTTCTCTATGTATATGGTGAGACAGGA-CTCTCCAACTGCTGAGACAAT--CACAGAAGGACAGTATCTCCATCGAGAATTTAACCATCAAGAATTTTTAAAGTATCAAAACT------CTTTAACTTGGTAACTGTATTA-TAAGAATCTCTC--TAAATACTCA
s panTro4.chr15              80157175 1253 +  99548318 AAAAGTATGTAAGGTGGTTTCTGG-CCTAATG-GAGGAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAACCTCATTTGGAATGTTAATCTAATTTGATTGGAAGGTTGAAGCATTTTTTTCAGATAC---AAAA--AAAAAAAGCCACTAGCTATCAATTTTCAGTTTATATCCTTTGCC--C----TCTT-----TAAGAATGAGTTCTTATACTGTGGCTTTTCCTTTACATCAATAAGCCAGTACTTATTGTCCTCTAGAAAGAG-AAATACC---CTAAAA----GAAAGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACTATGTTTAAAGTGCTTTAAACTCTAG-ACTATTTACAGAGGCCTAT-AGTTTTAAATG-TTATTTCCCttt--------------aaaaaaaaattacataaaataaatttGATCTCTCC----TTCTCTGTGTTTTTGGTCAGAACCAAAAGTTACCTAAGCTACATTTTTGTCCAGGTCAGCCACATTGCTGGT-AAAAGCT---AACTTCAATCAATCTGCATGAAAATGAGTAGACCACCTACA-GTTAGTTTGTATTTCTGTGTTCATCGGGAAAGAATCTAAAGAAGTTGTAGGTTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATACGGTGCACATACACTCCCCTCTATACTTAGCGACATGGAATTGCACAGGTGTGAATTCAAGACGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTTAAAAGTTGCTAG-TAAGGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCCCCAAGGGATTTTATTCATTAGGAACTAGATGACAATGAATTAACACACTACATATC----TT-TTAACTT-TGCAAC-AGAGAAGG-AATTGCAATTGTCTTTAAGACA-G------TTTCAATAGTTGCC-----ACCCCCTAGTTGT------AAAAAAGATTATCAGGAAATTC----AACATAG-GAAAAGATTTAAAAGACTAACA------------------------G-----AAAAAATAAC--------TGTTCTACTTATAAAGAAAATGGGAATTAAAATGAGAATTCTGC-TTACCAAAACTGAAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAA-TTTTTTCTTCTCTATGTATATGGTGAGACAGGA-CTCTCCAACTGCTGAGAGAAT--CACAGAAGGACAGTATCTCCATCGAGAATTTAACCatcaagaatttttaaaatatcaaaact------ctttaacttggtaactgtatta-taagaatctctc--taaatactca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10167876 1253 +  10928107 AAAAGTATGTAAGGTGGTTTCTGG-CCTAATG-GGGGAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAACCTCATTTGCAATGTTAATCTAATTTGATTGGAAGGTTGAAGCATTTTTTTCAGATAC-AAAAAA--AAAAAAAGCCACTAGCTATCAATTTTCAGTTTATATCCTTTGCC--C----TCTT-----TAAGAATGAGTTCTTATACGGTGGCTTTTCCTTTACATCAATAAGCCAGTACTTATTGTCCTCTAGAAAGAG-AAATACC---CTAAAA----GAAAGACTACTCTAAAAATAATTTTGTTATACTTTCCTAAGCACTACATTTAAAGTGCTTTAAACTCTAG-ACTATTTACAGAGGCCTCTAAGTTTTAAACA-TTATTTTCCttt---------------aaaaaaaattacataaaataaatttGATCTCTCC----TTCTCTGCATTTTTGGTCAGAACCAAAAGTTACCTAAGCCACATTTTTGTCCAGGTCAGCCAGATTGCTGGT-AAAAACT---AACTTCAATCAATCTGCATGAAAATGAGTAGACCACCTACA-GTTAGTTTGTATTTCTGTGTTCATCGGGAAAGAATCTAAAGAAGTTGTAGGTTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATACCGTGCACATACACTCCCCTCTATACTTAGGCACATGGAATTGCACAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAAGGA-TGTCTGCTGCCCTAAGCCTGAGTTATAGCATTTTCCCCAAGGGATTTTATTCATTAGGAACTAGATGACAATGAATTAACACACTACATATC----TT--TAACTA-TGCAAC-AGGGAAGG-AATTGCAATTGTCTTTAAGACA-G------TTTCAATAGTTGCC-----ACCCCCTAGTTGT------aaaaaagattatcaggaaattc----aacatag-gaaaagatttaaaagactaata------------------------g-----aaaaaataac--------tgttctacttataaagaaaatgggaattaaaatgagaattctgc-tcaccaaacctgaaaaattacagttacaatattcaatggtgatgagccatttaggtaa-ttttttcttctctatgtatatggtgagacagga-ctctccaactgctgagagaat--ctcagaaggatagtatctccatcaagaatttaaccatcatgaatttttaaaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc--taaatactca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17244983 1253 - 121039945 AAAAGTATGTAAGGTGGTTTCTGG-CCTAATG-GGGGAACAGTAGTTAGAATTTCCTTGGGTAAGTACGCCTTTCAGATAT-CTGTTAACCTCATTTGCAATGTTAATCTAATTTGATTGGAAGGTTGAAGCACTTTTTTCAGATAC-AAAAAA--AAAAAAAGCCACTAGCTATCAATTTTCAGTTTATATCCTTTGCC--C----TCTT-----TAAGAATGAGTTCTTCTACTGTGGCTTTTCCTTTACATCAATAAGCCAGTTCTTACTGTCCTCTAGAAAGAG-AAATACC---CTAAAA----GAAAGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACTACTTTTAAAGTGCTTTAAACTCTAG-ACTATTTACAGAGGCCTCT-AGTTTTAAATG-TTATTTTCCTTt---------aaaaaaaaaaaagattacataaaataaaTTTGATCTCTC-------CTCTGCGTTTTTGGTCGGAACCAAAAGTTACCTAAGCTACA-TTTTGTCCAGGTCAGCCAGACTGCTAGT-AAAAACT---AACTTCAATCAATCTGCATGAAAATGAGTAGACCACCTACA-GTTAGTTTGTATTTCTGTGTTCATCGGGAAAGAATCTAAAGAAGTTGTAGGTTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATACCGTGCACATATACTTCCCTCTATACTTAGGGACATGGAATTGCACAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAAGGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCCCCAAAGGATTTTATTCATTAGGATCTAGATGACAATGAATTAACACACTACATATC----TT--TAACTT-TGCAAC-AGGGAAGG-AATTGCAATTGTCTTTAAGACA-G------TTTCAATAGTTGCC------CCCCCCAGTTGT------AAAAAAGATTATCAGGAAATTC----AACATAG-GAAAAGATTTAAAAGACTAATA------------------------G-----AAAAAATAAC--------TGTTCTACTTATAAAGAAAATGGGAATTAAAATGAGAATTCTGC-TTACCAAACCTGAAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAA-TTTTTTCTTCTCTATGTATATGGTGAGACAGGA-CTCTTCAACTGCTGAGAGAAT--CACAGAAGGATAGTATCTCCATCAAGAATTTAACCATCAAGAATTTTTAAAATATCAAAACT------CTTCAACTTGGTAACTGTATTA-TAAGAATCTCTC--TAAATACTCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106719844 1255 - 170124641 AAAAGTATGTAAGATGGTTTCTGG-CCTAATG-GGGTAACAGTAGTTAGAATTTCC-----TAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAATTTGATTGGAAGGTTGAAGCATTTTTTTCAGATAG----AAA--AAAAAAAGCCACTAGCTATCAATTTTCAGTTTATATCCTTTGCC--C----TCTT-----TAAGAATGAGTTCTTATACTGTGGCTTTTACTTTGCATCAATAAGCCAGTACTTATTGTCCTCTAGAAAGAG-AAATACC---CTAAAA----GAAGGAATACTCTAAAAATAATTTTGTTACACTTTTCTAAGCACTACGTTTAAAGTGCTTTAAA--CTAG-ACGATTTACAGAGGCCTCT-AGTTTTAAATG-TTATTTTCCTTTaaaaaaaaaaaaaaaaaaaaaGATTGCATAAAATAAATTTGATCTCTCC----TTCTCTGCGTTTTCAGTCGGAACCAAAAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGT-AAAAACT---AACTTCAATCAACCTGCATGAAAATGAGTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATCTAAGGAAGTTGTAGGTTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATACCATGCACACACACTCCCCTCTATACTTAGGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCT-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAAGGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCCCCAAGGGATTTTATTCATTAGGAACTAGATGATGATGAACCAACATACTACATATC----TT--TAACTT-CGCAAC-AGGGAAGG-AATTGCAATTGTCTTTAAGACA-G------TTTCAATAGTTGCT-----ATCCTCTAGTTGT------AAAAAAGATTATCAGGAAATTC----AATATAG-GAAAAGATTTAAAAGACTAACA------------------------G-----AAAAAATAAC--------TGTTCTGCTTATAACGAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTGAAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAA-TTTTTTCTTCTCTATGTATATGGTTAGACAGGA-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCACCAAGAATGCAACCatcaagaattttaacaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc--taaatactca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108452443 1259 - 171882078 AAAAGTATGTAAGATGGTTTCTGG-CCTAATG-GGGTAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAATTTGATTGGAAGGTTGAAGCATTTTTTTCAGATAG----AAA--AAAAAAAGCCACTAGCTATCAATTTTCAGTTTATATCCTTTGCC--C----TCTT-----TAAGAATGAGTTCTTATACTGTGGCTTTTACTTTGCATCAATAAGCCAGTACTTATTGTCCTCTGGAAAGAG-AAATACC---CTAAAA----GAAGGAATACTCTAAAAATAATTTTGTTACACTTTTCTAAGCACTACGTTTAAAGTGCTTTAAA--CTAG-ACGATTTACAGAGGCCTCT-AGTTTTAAATG-TTATTTTCCTTT-aaaaaaaaaaaaaaaaaaaaGATTGCATAAAATAAATTTGATCTCTCC----TTCTCTGCATTTTCAGTCGGAACCAAAAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGT-AAAAACT---AACTTCAATCAACCTGCATGAAAATGAGTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATCTAAGGAAGTTGTAGGTTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATACCATGCACACACACTCCCCTCTATACTTAGGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCT-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAAGGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCCCCAAGGGATTTTATTCATTAGGAACTAGATGATGATGAACCAACATACTACATATC----TT--TAACTT-TGCAAC-AGGGAAGG-AATTGCAATTGTCTTTAAGACA-G------TTTCAATAGTTGCT-----ATCCTCTAGTTGT------AAAAAAGATTATCAGGAAATTC----AATATAG-GAAAAGATTTAAAAGACTAACA------------------------G-----AAAAAATAAC--------TGTTCTGCTTATAACGAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTGAAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAA-TTTTTTCTTCTCTATGTATATGGTTAGACAGGA-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCACCAAGAATGCAACCatcaagaattttaacaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc--taaatactca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103220133 1255 - 162156779 AAAAGTATGTAAGATGGTTTCTGG-CCTAATG-GGGTAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAATTTGATTGGAAggttaaagcatttttttcagata-----aaa--aaaaaaagccactagctatcaattttcagtttatatcctttgcc--c----tctT-----TAAGAATGAGTTCTTATACTGTGGCTTTTACTTTGCATCAATAAGCCAGTACTTATTGTCCTCTAGAAAGAG-AAATACC---CTAAAA----GAAGGAatactctaaaaataattttgttacacTTTTCTAAGCACTACGTTTAAAGTGCTTTAAA--CTAG-ACGATTTACAGAGGCCTCt-agttttaaatg-ttattttccttt-----aaaaaaaaaaaaaaaagattacataaaataaatttgatctCTCC----TTCTCTGCGTTTTCAGTCGGAACCAAAAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGTAAAAAACT---AACTTCAATCAATCTGCATGAAAATGAGTAGACCACTTACa-gttagtttgtatttctgtgttcatTGGGAAAGAATCTAAGGAAGTTGTAGGTTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACAtaccatgcacacacactcccctCTATACTTAGGGACATGGAATTGCATAGGTGTGAATTAAAGATGATTACTATTCCTAGCCttcg-ttaacattttaaagagtT-AAAGTTGCTAG-TAAGGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCCCCAAGGGATTTTATTCATTAGGAACTAGATGATGATGAACCAACATACTACGTATC----TT--TAACTT-TGCAAC-AGGGAAGG-AATTGCAATTGTCTTTAAGACA-G------TTTCAATAGTTGCT-----ATCCTCTAGTTGT------AAAAAAGATTATCAGGAAATTC----AATATAG-GAAAAGATTTAAAAGACtaata------------------------g-----aaaaaataac--------tgtTCTGCTTATAACAAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTGAAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTaggtaa-ttttttcttctctatgtaTATGGTTAGACAGGA-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCATCAAGAATGCAACCATCAagaattttaacaatatcaaaACT------CTTCAACTTGGTAACTGTATTA-TAAGAATCTCTC--TAAATACTCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21142023 1259 -  24206276 AAACGTATGTAAGATGGTTTCTGG-CCTAAAG-GGGTAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAATTTGATTGGAAGGTTGAAGCATTTTTTTCAGATAG----AAA--AAAAAAAGCCACTAGCTATCAATTTTCAGTTTATATCCTTTGCCCTC----TCTT-----TAAGAATGAGTTCTTATACTGTGGCTTTTACTTTGCATCAATAAGCCAGTACTTACTGTCCTCTAGAAAGAG-AAATACC---CTAAAA----GAAGGAATACTCTAAAAATAATTTTGCTACACTTTTCTAAGCAGTACGTTTAAAGTGCTTTAAA--CTAG-ACGATTTACAGAGGCCTCT-AGTTTTAAATG-TTATTTTCCTTT---aaaaaaaaaaaaaaaaaagattacataaaataaaTTTGATCTCTCC----TTCTCTGCGTTTTCGGTCGGAACCAAAAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGT-AAAAACT---AACTTCAATCAATCTGCATGAAAATGAGTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATCTAAGGAAGTTGTAGGTTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATACCATGCACACACACTCCCCTCTATACTTAGGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACCATTCCTAGCCTTCG-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAAGGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCCCCAAAGGATTTTATTCATTAGGAACTAGATGATGATGAACCAACATACTACATATC----TT--TAACTT-TGCAAC-AGGGAAGG-AATTGCAATTGTCTTTAAGACA-G------TTTCAATAGTTGCT-----ATCCTCTAGTTGT------AAAAAAGATTATCAGGAAATTC----AATATAG-GAAAAGATTTAAAAGACTAATA------------------------G-----AAAAAATAAC--------TGTTCTGCTTATAACGAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTGAAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAA-TTTTTTCTTCTCTATGTATATGGTTAGACAGGA-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCATCAAGAATGCAACCatcaagaattttaacaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc--taaatactca
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22281748 1228 + 158406734 AGACGTTTGTAAGGTGGTTTCTGG-ACTAATG-GGGAAGCAGTAGTTAGAATTTCCTTGGGTAAGTATGCTTTTCAGATAT-TTGTTAATATCACTTGCAAGGTTAATCTAATTTGATTAGAAGGTTGAAACATTTTTTTCAGATAG----AAA--AAAAAAAGCCAGTAGCTATCAATTTTCAGTTTATATCCTTTGCC--C----TCTT-----TAAGAATGAGTTCTTATCCTGTGGTTTTTCCTTTACATCAATAAGCCTGTACTTACTGTCCTCTAAAAAGAA-AAAAAAC--GCTAAAA----GAAAGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACTACCCTTAAAGTGCTTTAAACTCTAG-ATTGTTTACAAAGGCCTCT-AGTTTTAAATG-TTATTTTCCTTT---TAAAAAAAAAAAAGAAAAGATTACATTAAATAAATCTGATCTCTC-------CTTTGCATTTCTGGTTGGAACAAAAAGCTACA----------GTTTGTCCAGGACAGCCAGGTTGCTAGT-AAAAACT---AACTTCAATCAATCTGCATGAAA------AGACC-CTTACA-GTTAGTTTG--TTTCTGTGTTCATTGGGAGAGAATGTAAGGAAGTGGTAGATTCAGGCTGATTTCATAGCCATTCTAAATTTAGATTCACACAAACCATGCATACACACTCCCCTCTATACTTAGGCACATTGAATTGCACAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCA-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAAGGA-TGTGTGCTGCCCTAAGCCTGGCTTAAAGCATTTTCCCCAAGGGATTTTATTCATTAGGAACTAGCTGACAATGAATTAACACACTACAGACC----TTTTTAACTT-TGCAAC-AGGGAAGG-AACTGCAATTGTCTTTAAGACA-G------TTTCAACAGTTTCC-----ACCCCCTAGTTGT------GAGAAAGA-TATCAGGAAATTC----AACACAGTAAAAAGATTTAAAAGACTAATA------------------------G-----AAAAAGTAAT--------TATTCTACTTATAAAGAAAATGGGAATTCAAATGAGAATTCTGC-TTACCAAACCTGAAAAATTACAGTTACAATATTCAATGGCGAAGAGTCACTTTGGTAATTTTTTTCTTCTCTATGTATATGGTGAGACAGGA-CCCTTCAACTGCTGAGGGAAC--AACAGAAGGATAGTATCT---------------CCATCAAGAATTTTTAAAATATCAAAACT------CTTCAAGTTGGTAATGGTATTA-TAAGAATCTCTC--TAAACACTCA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81399936 1131 + 145441459 GAACACATG---GAGAGTTCCTGG-----ATGTGGGTGGAAAGGGTTTCAAATTCTCCAGGGAAGCAG--TTTTCAGTTATCTTGTTAGTGTAATTTGCCCTGTCCTTC-AGCATGA---AATGGCTGAAGTATTTTTTTT---TCC----AAA--TAAAATAACCAAGAG----------------------CTCTGCC--CTGTTTTTT-----TAATCATAAATTCTAATTTCATATCCTTTCCTTTACTGC---AAGTTAGCATTTACTGTCCTCTGAAAAGAATAAATACAACATTCAAA----CAAATTACACTCC-AAAACAACTTAATTGCATTTC--------CTATGTATAGATAATATTTAA-----G-ACTGC------AGATATAT-TATTTTAGATGCTCAGTTTAGTAT------------------ACTGACTTTACTAAGCAG---------TTAC----TTCTCTGGACT--CAGTCAGAA--GAAAGTTACTTCAGTTAC-TTTTTGTTCAGAGCA-CCAAACTGCTGGA-GGAAAGA---AA---AGCTCAACCTACATAAAACT----AAATCCTTTAGT-ACAAGTTTGGATTTTTAAGTTCATTAAGAAGGAAACTAAAGA---TGCTGGCTCAAACTGATTTCACAGCTATTCTAAGTGGGGAGTTA---------TGCTTGTAAGCACACCTTTATACTTAGGGACA--GAACTATAAAAGTGTGAATTC---ACAATTATTATGCCTAGCCAGCA-TTAATGTTTTTAAAAGTT-CAATTTGTCAGTTAAAGA-TGTATAGTTATATAAGCTGACTTTATAGCACTTTCCCTGAG-----TTATTTATTGGGAAGTAGATAAAAACTAGATTAAAAATTGCCTACCATCTTT--TAATTTCTTCAAC-AATGGAGACAATCACAACTCTCTTTAAGGCATG------TTTTAG-------------ATATCCTGGTAGT-------------------------TTCCTGTGCCACGG-GAAAAGATTAAAAACACAAATA------------------------GCTTTTAAAAGGT-----------TGTTCCACTTATTAAGGAGATAGGAATAAAAATGAGAATTTTACTTTACCAAGCTGTGAAAATTATAGTTACAACATTCAGTGGTGACAAGTCATTTTGATAA-TCTTCTTTACTA---GTGTA-GGTGAGGCAGCA-CTGTCAAACTGTACAAGGGA---CAAGAAGGGACAGCATTTCCAT----------ACATGCAAGGGTTTTAAAACTTTTGTAACTGCTTAACCTAAACTTAGTACTTTCAGTA-CTATAATCTCTT--GCAGGGCTCA
i mm10.chr7                 C 0 I 2019
s canFam3.chr3               54448472 1267 +  91889043 aaaaaaaaaaaaaaaGGTCCCTGGGTCCAGTG-GGGAAAGGTAAGTTAAGACTTCCCTGAGGAAAAACACTTTTCAAATATCTTGTTAATCTGATTTACAATATC-------TTTGATTAGATAGTTGAATCTTTTTCCTAATAGAA----AAATTAAAAACAGCCAGTAGCTA-------TCAGTTCATAACC-CTGCC--C----TCCTTTCTGTGAGGATGAG-----ATCAGGTGGCCTTTCCTTTACATTAATAAGCTGGTATTT----TCTTCTGCAAGGTA-AAAAGTCAAAATAAAAATTTAAAAAAACCCTTTAAA---AATTTGACTACATTTTCCTAAGCACTTGGTTAAGA----TTTAAAGCATGGCACTGTTTATATAGACCCTT-ACTTTTCAATC-TTAATTTCCTTT--------------TTAAAAAAGGCACATTAAATAAATCTGATCTCTCTCCTGCTCTTTGAATTT-TGGTCAGAATAAAACGTTATGTAAGTTACA-TTTTGTGTAAAACAGAGGGATTGCTGGG-AAAAAAACAGAAATTGCACTGATGTGCCTACGAAT-----GAACACTTAAAGGTTAGTCCATACTTCCGTACTCACTGGGAAAGAATCAGAGGA---CAGAGGTTCAAGGTGGAGCCACAGCCATTCCAAACCTGAATTCGCACC-----TGCACACACACCTTCCAATA----CAGAGACACGGAGCCACACAGGTGTG-ACTCAGGACAATTGTGATTCATGACCACCATTTAACATGTCCAAGAGTC-GAAACTGCCAG-TAAAGAGTGTTTGCCAATTTAAGCCCATTTTAACACATTTTCCTCATGGGATTTTATTCA-AAGGAACTAGATAACAATGAATTAAAAAGCTACATATTTTCTTT--TAACTT-CACAACAAAGGAAGG-AATCACAGTGGTCTTTCAGGCA-GTTTGGTTTTCCAGAGTGCCTGGTGGAGTTTCCAGTCAAAGAGAAAAAGAAGGTCAGTAGGAAATTC----AACA-GG-GAAAAGAT--AAAAGGCCAACACTGTTGttttattttttttttttta-----aaCAAAAAACCCCCAACTTGTTCCACTT-TAAAACAAATGGGAATTCAACTTAGAATTCTGC-TTACCAAATCAGAAAAATTACAGGTATAATATGCAGTGGTGAGGCGTCATTTCACTAA---TTTTCTTCTCTGCATAATACATAAGACAAGCTCTCTCAAATTGCTGGAGGGAC--CATAAAAAGATAGCATTTCCAT--------AAATCataaggagctt--aaaaaattaaaact------gttcaacttagtgattgtattgctaagaatctctaagtaaatactca
i canFam3.chr3              I 335 C 0

a score=1607296.000000
s hg38.chr15_KI270850v1_alt    376454 526 +    430880 TAAATGCTAAGAAAGATTTACCTACAAAGATGCCTGTCACAATGCAATCAATTGCGAAAA-CTGAAAATAACTATTCTG-TCAAAATGGACTACGAACTTAGCCATTAAAATACATACCTCAGCATATGACAAAGGA-------------GAACACTTAAGTGGCTGGGGAAAGAGAGTAAGTTGTATA---------CAAGACGACAGCTGCATGAAGATATTCAGAAATACG---G-AGAGAACTCAAAGTCATCAAAAACAACTGAAGTAGACTACAGGTAGTAGCACGTATGAATCTTTACTGAAATTTTCAAATTGTTTATAGCAAATGTAAACTACTC---AAAAAAATTCAGATAA----TTTTAAGAAATTAAAATCTAGGTATGGCTCTCTGACAGAGAAATTCACAATATATATTTAAAATAGTATATTTAAAGAAAGATGAGCTGTC-----CTAAGAAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATCTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTGAGAAGTAGTTCAGTA
s panTro4.chr15              80158428 528 +  99548318 taaatgctaagaaagatttacctacaaagatgcctgtcacaatgcaatcaattgcgaaaa-ctgaaaataacTATTCTG-TCAAAATGGACTACGAACTTAGCCATTAAAATACATACCTCAGCATATGACAAAGGA-------------GAACACTTAAGTGGTTGGGGAAAGAGAGTAAGTTGTATA---------CAAGACGACAGCTGCATGAAGATATTCAGAAATACG---G-AGAGAACTCAAAGTCATCAAAAACAACTAAAGTAGACTACAGGTAGTAGCACGTATAAATCTTTACTGAAATTTTCAAATTGTTTATAGCAAATGTAAACTACTC-AGAAAAAAATTCAGATAA----TTTTAAGAAATTAAAATCTGGGTATGGCTCTCTGACAGAGAAATTCACaatatatatttaaaatagtatatttaaaGAAAGATGAGCTGTC-----TTAAGAAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATCTGGTCATACGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTGAGAAGTAGTTCAGTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10169129 533 +  10928107 taaatgctaagaaagatttacctacaaagatgcctgtcacaatgcaatcaattgtgaaaa-ctgaaaataacTATTCTG-TCAAAATGGACTACGAACTTAGCCATTAAAATACATACCTCAGCATATGACAAAGGA-------------GAACACTTAAGTGGCTGGGGAAAGAGAGTAAGTTGTATA----CAAGGCAAGACCACAGCTGAATGAAGATATTCAGAAATACG---G-AGAGAACTCAAAGTCATCAAAAACAACTGAAGTAGACTACAGGTAGTAGCACGTATAAATCTTTACTGAAATTTTCAAATTGTTTATAGCAAATGTAAACTACTC-AGAAAAAAATTCAGATAA----TTTTAAGAAATTAAAATCTGGGTATGGCTTTCTGACAGAGAAATTCACTATATATATTTAAAATAGTACATTTAAAGAAAGATGAGCTGTC-----TTCAGAAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTCAGAAGTAGTTCAGTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17246236 532 - 121039945 TAAATGCTAAGAAAGATTTACCTACAAAGATGCCTGTCAGAATGCAATCAATTGTGAAAA-CTGAAAATAACTATTCTG-TCAAAATGGACTACCAACTTAGCTATTAAAATGCATACCTCAGCATACGACAAAGGA-------------ATATACTTAAGTGGTTGGGGAAAGAGAGTAAGTTCTATA----CAAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATATG---G-AGAGAACTCAAAGTCATCAAAAACAACTGAAGTAGACTACAGGTAGTAGCACGTATAAATCTTTACTGAAATTTTCAAATTGTTTATAGCAAATGTAAACTACTC-A-GAAAAAATTCAGGTAA----TTTTAAGAAATTAAAATCTGGGTATGGCTCTGTGACAAAGAAATTCACAATATATATTTAAAATAGTACATTTAAAGAAAGATGAGCTGTC-----TTAAGAAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTCAGAAGTAGTTCAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106721099 534 - 170124641 taaacgttaggaaagatttacttacaaagatgcctgtcacaatgcaatcaattgtgaaaa-ctgaaaataacTATTCTG-TCAAAATGGACTACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGA-------------GAATACTTAAGTGGTTGAGGAAAGAAAGAAAGTCGTATA-----AAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATACG---G-ACAGAACTCAAAG--ATCAAAAACAACTGAAGTAGACTACAGGTAGCAGCACATACAAATCTTTACTAAAATTTTCAAATTGTTTATAGCAAATGTAAACTACTC-A-AAAAATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAAGAATTCACAACATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAGAAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108453702 534 - 171882078 taaacgttaggaaagatttacttacaaagatgcctgtcacaatgcaatcaattgtgaaaa-ctgaaaataacTATTCTG-TCAAAATGGACTACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGA-------------GAATACTTAAGTGGTTGAGGAAAGAAAGAAAGTCGTATA-----AAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATACG---G-ACAGAACTCAAAG--ATCAAAAACAACTGAAGTAGACTACAGGTAGCAGCACATATAAATCTTTACTAAAATTTTCAAATTGTTTATAGCAAATGTAAACTACTC-A-AAAAATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAAGAATTCACAATATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAGAAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103221388 535 - 162156779 TAAATGTTAGGAAAGATTTACTTACAAAGATGCCTGTCACAATGCAATCAAttgtgaaaa-ctgaaaataactatTCTG-TCAAAATGGACTACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGA-------------GAATACTTAAGTggttgaggaaagaaagaaagtcgtATA-----AAGGCAAGACTACAGCTGCAGGAAGATATTCAGAAATACG---G-ACAGAACTCAAAG--ATCAAAAACAACTGAAGTAGACTACAGGTAGCAGCACATATAAATCTTTACtaaaattttcaaattgtttatAGCAAATGTAAACTACTCaa-aaaaatattcagataa----ttttaagaaattataatcTGGGTATGGCTCTCTGACAAAAGAATTcacaatatatatttcaaaaagtacatttaaagaaagatgagctgtcttcttttaagaaaataattcagtaaaaaaCTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21143282 547 -  24206276 taaatgttaggaaagatttacttacaaagatgcctgtcacaatgcaatcaattgtgaaaa-ctgaaaataacTATTCTG-TCAAAATGGACTACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGAGAATACTTAAGTGGAATACTTAAGTGGTTGAGGAAAGAAAGTAAGTTGTATA-----AAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATACG---G-ACAGAACTCAAAG--ATCAAAAACAACTGAAGCAGACTACAGGTAGCAGCACGTATAAATCTTTACTAAAATTTTCAAATTGTTTATAGCAAATGTAAACTACTC-A-AAAAATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAGGAATTCACAATATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAGAAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCGTATATTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTACTTTAGTA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22282976 507 + 158406734 TAAATGCTAAGAAAGATTTACCTACAAAGATGCTGGTCACAATGCAATCAATTGTAAAA--------------ATTCCC-TCAAAATGGACTACAAACTTAGCCATTGAAATACGTACCTCAGCATACGACGAAGGA-------------GAATGC-TAAGTGGTTGGGGAAAGAGAGTAAGCTGTATGTATATAAGGCAAGATTGCAGCTGCATGAAGGTATTAAAAAATATG---GAAAAGAACTGAAAGTCATCAAAAACAACTGAAGCAGAC-------AGTGGCATGTATAA----CTAATGGCATTTTAAATTTTTTTACAGCAAATATAAACTACTC-A-AAAAAATTTCAGATAA-----TTTAAGAAATTAAAATCTGGATATGGC----TGACAAAGGAATTCACAATATATACTTAAAGTAGTACATGTAAAGAAAGACGGGCTATC-----TTAAGAAAATAATTCAGTAAAAAACTTTTCTGGGATGTTATGTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTCGAAAGTAGTTCAGTA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54449739 461 +  91889043 taaaggcagagaaatgcctacctataaagatgtttgtgacaaagctattaatgttgagaagctgaaaataacTATTTCGCTCATTAAGAGGCAGGAACTTAGCCATTAATATCCCTGGTTCCACACATGATAGAGGA-------------GAATGCTTAAGTGGCTAGGGAGGGAGAATAAACCATGAA------AAGCAGGATTACAACT-CATGAAAATTTCCACAAGTACACATA-AAAGGACCAACAGTCTTC-CAAATGACCAAAGTAGACTACAGGTAGGAGGATGTATAAATTGGTACTGCATTTTCGAAATCATCTACAGCAAATATAAATCACAC-A-CAAAAAATTCAGAAGATGGATTTTAAGAATTTAAAATCTGGGTA-----------------AACTTACaaaatat------taaattatatttat---------------------ttgaaaaaat--tttatttaaga---------------------------------gagagtgggtgcacacatgtgtgc--acatggaggggtggaggggca
i canFam3.chr3              C 0 I 258
e mm10.chr7                  81401067 2019 + 145441459 I

a score=99816.000000
s hg38.chr15_KI270850v1_alt    376980 33 +    430880 CTTCTAAGATTCTACTATGAGGATAACGGCCAA
s panTro4.chr15              80158956 33 +  99548318 CTTCTAAGATTCTACTATGAGGATAACGGCCAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10169662 33 +  10928107 CTTCTAAGATTCTACTATGAGGATAACAGCCAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17246768 33 - 121039945 CTTCTAAGATTCTACTACAAGGATAATGGCCAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106721633 33 - 170124641 CTTCTAAGATTCTACTGTGAGGATAATGGTCAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454236 33 - 171882078 CTTCTAAGATTCTACTGTGAGGATAATGGTCAA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103221923 33 - 162156779 CTTCTAAGATTCTACTGTGAGGATAATggtcaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21143829 33 -  24206276 CTTCTAAGATTCTACTGTGAAGATAATGGTCAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22283483 33 + 158406734 CTTCTAAGATTCTACTATAAGGATAATGGTCAA
i calJac3.chr6              C 0 I 1248
e mm10.chr7                  81401067 2019 + 145441459 I
e canFam3.chr3               54450200 258 +  91889043 I

a score=3962.000000
s hg38.chr15_KI270850v1_alt    377013 22 +    430880 A--Ttttgttttgttttgtttttg
s panTro4.chr15              80158989 16 +  99548318 A--ttttgttttg------ttttg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10169695 16 +  10928107 A--ttttgttttg------ttttg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17246801 11 - 121039945 A--ttttg-----------ttttg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106721666  8 - 170124641 Attttttg----------------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454269  8 - 171882078 Attttttg----------------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103221956 18 - 162156779 attttttgttttg------ttttg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21143862 18 -  24206276 Attttttgttttg------ttttg
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22283516 1248 + 158406734 I
e canFam3.chr3               54450200 258 +  91889043 I

a score=219622.000000
s hg38.chr15_KI270850v1_alt    377035 69 +    430880 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctcatctcact
s panTro4.chr15              80159005 69 +  99548318 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctcatctcact
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10169711 69 +  10928107 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctcatctcatt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17246812 69 - 121039945 tttttgttttgagacaggctctggctctgttacacaggctggaatgcagtggtgtgatctcatctcact
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106721674 68 - 170124641 -ttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatgtcatctcact
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454277 68 - 171882078 -ttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctcatctcact
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103221974 69 - 162156779 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcaatggtgtgatctcatctcact
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21143880 69 -  24206276 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctcatctcact
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22284764 69 + 158406734 tttttgttttgagacagggtctgcctctgttgcacaggctggaatgcaattgtgtgatctcaactcatt
i calJac3.chr6              I 1248 I 2236
e mm10.chr7                  81401067 2019 + 145441459 I
e canFam3.chr3               54450200 258 +  91889043 I

a score=235771.000000
s hg38.chr15_KI270850v1_alt    377104 97 +    430880 gcaccctctgcctcccaggctcaagcgatcctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatccaactaggtttttt
s panTro4.chr15              80159074 93 +  99548318 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatccaactaggtt----
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10169780 97 +  10928107 gcatcctctgcctcccaggctcaagcgaccctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatccaactagttttttt
i ponAbe2.chr15_random      C 0 I 330
s nomLeu3.chr6               17246881 97 - 121039945 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatacaactagttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106721742 97 - 170124641 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacaggccaccacatccaactcattttttt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454345 97 - 171882078 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacaggccaccacatccaactaattttttt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103222043 97 - 162156779 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacaggccaccacatccaactaattttttt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21143949 97 -  24206276 gcaacctctgcctcccaggctcaagcgattctcccacctcagcctctggagcagccaggactacaggcacaggccaccacatccaactaattttttt
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I
e canFam3.chr3               54450200 258 +  91889043 I

a score=162691.000000
s hg38.chr15_KI270850v1_alt    377201 124 +    430880 tttgtttgttttttgtttttgtattttttttttgtagaaacagggtttcgtcatattgcccaggctggtctcgaactcctgggctcaagag--atccacctgccttggcctcccaaagtgtgggat
s panTro4.chr15              80159167 119 +  99548318 ----tttgtttttt-tttttgtattttttttttgtagaaacagggtttcgtcatattgcccaggctggtctcgaactcctgggctcaagag--atccacctgccttggcctcccaaaatgtggaat
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17246978 114 - 121039945 ----tttatttttttttttta---tttttttttgtagaaacagggtttcgtcatattgcccaggctggtctcgaa---ctgggctcaagag--atctacctgccttggcctcccaaagtgtgggat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106721839 104 - 170124641 -------------------tg---tatttttttgtaaaaacagggtttcatcatattgcccaggctagtctcgaactcctgggctcaagagagatccacctgccttagcctcccgaagtgggagaa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454442 104 - 171882078 -------------------tg---tatttttttgtaaaaacagggtttcatcatattgcccaggctagtctcgaactcctgggctcaagagagatccacctgccttagcctcccaaagtgtgagaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103222140 104 - 162156779 -------------------tg---tatttttttgtaaaaacagggtttcatcatattgcccaggctagtctcgaactcctgggctcaagagatatccacctgccttagcctcccaaagtgtgagaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21144046 104 -  24206276 -------------------tg---tatttttttgtaaaaacagggtttcatcatattgcccaggctggtctcgaactcctgagctcaagagatatccacctgccttagcctcccaaagtgtgagaa
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I
e canFam3.chr3               54450200 258 +  91889043 I
e ponAbe2.chr15_random       10169877 330 +  10928107 I

a score=62922.000000
s hg38.chr15_KI270850v1_alt    377325 33 +    430880 tacaggtgtgagtgaccgcatccagccCAAAGG
s panTro4.chr15              80159286 33 +  99548318 tacaggtgtgagtcaccgcatccagccCAAAGG
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17247092 33 - 121039945 tacaggtgtgagtcaccgcatccggccCAAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106721943 33 - 170124641 tacaggtgtgagccactgcatccggccCAAAGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454546 33 - 171882078 tacaggtgtgagccactgcatccggccCAAAGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103222244 33 - 162156779 tacaggtgtgagccactgcatccggcccaaAGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21144150 33 -  24206276 tacaggtgtgagccactgcatctgcccCAAAGG
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54450458 23 +  91889043 TACAGATGTTAG----------CAGTCCAAGGT
i canFam3.chr3              I 258 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I
e ponAbe2.chr15_random       10169877 330 +  10928107 I

a score=75585.000000
s hg38.chr15_KI270850v1_alt    377358 31 +    430880 TTTTCT--------------TAATGT------GGAAGTTCATCCCCACATT
s panTro4.chr15              80159319 31 +  99548318 TTTTCT--------------TAATGT------GGAAGTTCATCCCCACATT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10170207 31 +  10928107 TTTTCT--------------TAATGT------GGAGGTTCATCCCCACATT
i ponAbe2.chr15_random      I 330 C 0
s nomLeu3.chr6               17247125 31 - 121039945 TTTTCT--------------TAATGT------GGAGGTTCATCCCCACATT
i nomLeu3.chr6              C 0 I 301
s rheMac3.chr7              106721976 31 - 170124641 TTTTCT--------------TAATGT------GGAGATTCATCCCCACATT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454579 31 - 171882078 TTTTCT--------------TAATGT------GGAGATTCATCCGCACATT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103222277 31 - 162156779 TTTTCT--------------TAATGT------GGAGATTCTTCCCTACATT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21144183 31 -  24206276 TTTTCT--------------TAATGT------GGAGATTCATCCCCACATT
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54450481 49 +  91889043 --TTCTAGGATTCGATCACAGACTGTCCCATAGGAAGTTCACTGCCACATT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I

a score=780464.000000
s hg38.chr15_KI270850v1_alt    377389 311 +    430880 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAC----AAGGAGGATATGA----AGAATTATCTCCACCT-AATTCCCTACCCCAGAGATAcc-tttcaaagat--ttttatgtatac-aagcatgtatacacatagcttttaaaaaatatatgcacaaatggtcaaa-tataccatttcac------atc-ttttttcaagtatt----ttaagagttctttccatatctgtataaagaaatcagcttcattattttatggcagcatggcagtccattccatgaacatgatgtatctaaccatttctctactgatgagcattcaggctgct
s panTro4.chr15              80159350 311 +  99548318 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAC----AAGGAGGATATGA----AGAATTATCTCCACCT-AATTCCCTACCCCAGAGATAGc-tttcaaagat--ttttatgtatac-aagcatgtatacacatagcttttaaaagatatatgcacaaatggtcaaa-tataccatttcac------atc-ttttttcaagtatt----ttaagagttctttccacatctgtataaagaaatcagcttcattattttatggcagcatggcagtccattccatgggcatgatgtatctaaccatttctctactgatgagcattcaggctgct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10170238 312 +  10928107 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ACGTACAACTTCAAAT----AAGGAGGATATGA----AGAATTATCTCCACCC-AATTCCCTACCCCAGAGATACC-TTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTTAAAA-ATATATGCACAAATGGTCAAA-TATACCATATCAC------ATC-TTTTTTCAAGTATT----TTAAgagctctttccatatctgtatatagaaatcaacttcattattttatggcagcatggcagtccattccgtgaacatgacatatctaaccatttctctactgatgagcattcaggctgct
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17247457 313 - 121039945 aaGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGTAGATATTA----AGAATTATCTccaccc-aattccctaccccagagatatc-tttcgaagattcttttgtgtatac-aagcatgtatacacatagcttttaaaa-atatatgcacaaatggtcaaa-tataccatttcac------atctttttttcaagtatt----ttaagaattctttccatatctgtatacagaaatcaacttcattattttatggcagcatggcagtccattccatgaacatgatgtatctaaccatttctctactgatgagcattcaggctgct
i nomLeu3.chr6              I 301 C 0
s rheMac3.chr7              106722007 319 - 170124641 AAGAGT---TAATAAG--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGA----AGAATTATCTCTACCC-AATTCCCTACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGCACAAATGGTCAAA-TATACCATTTCAATTGAAAATA-TACTTTCAAGtatt----ttaagagtttttcccatatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacataatgtatctaaccatttctctactgataagcattcaggcttct
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454610 319 - 171882078 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGA----AGAATTATCTCTACCC-AATTCCCTACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGTACAAATGGTCAAA-TATACCATTTCAATTGAAAATA-TACTTTCAAGTATT----TTAAgagttctttccaaatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacataatgtatctaaccatttctctactgataagcattcaggcttct
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103222308 319 - 162156779 Aagagt---taataaa--------------------ataatagc-------------------atgtACAACTTCAAAT----AAGGAGGATATGA----AGAATTATCTCTACCC-AATTCCCTACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATAcacatagctttaaaaa-atatatgcacaaaTGGTCAAA-TATACCATTTCAATTGAAAATA-TACTTTCAAGTATT----TTAAGAGTTCTTTCCATATCTGTATACAGAAATCAACTTCATTACCTTATGGCAGCATGGCAGTCCCTTCCATGAACATAATGTATCTAACCATTTCTCTACTGATAAGCATTCAGGcttct
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21144214 319 -  24206276 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAAGATATGA----AGAATTATCTCTACCC-AATTCCCTACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGCACAAATGGTCAAA-TATACCAtttcacttgaaaata-tactttcaagtatt----ttaagagttctttccatatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacataatgtatctaaccatttctctactgataagcattcaggctgct
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54450530 355 +  91889043 CAGAGTTCCTGATAAAGCTGTGCACAACTTCACTGGATCTTAGCCAAGAGGCTGTGAAGCGATGTGCACAACTTAAAATAGGAAAGGAAAATATAAAGTGAGAATCCTCTTTCCTCAAATTCCCCAACTCAGAAGTACC-TGTAGAAGATGCTTTCATGAGCACAAAGCACATAAACACAGAGCTTTTACA--AGATAGACACAAAGAGTCAAATTGTATTATTTCAG------ATC-TTTCTTCCCTTACTATAGTTTGGACCTCTTTCCAT---TGTGTACAGAGATCGACTTCATGGTCATGTGGCAGCA------TCCAGCTTGTGAGCG-AGCGTGC---ACTATgtctctactgatggacactcaggtcttt
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I

a score=1020397.000000
s hg38.chr15_KI270850v1_alt    377700 299 +    430880 tctagtagtttttatttcttctaca---aataaggcaatgaacatccctcaacattgatcttga-cttacttgggcaagcatacttgtTAAATGCATACACCTTACAATCCAGTACATTTAAAATTGATAGCTGTTGGTCAAAATTGACCCAAGAACCACACCCATTTAAATTCCCAACGATATGAGAACTATTTCTTTGTACCCTTACCAAATTTTACTTTTTATGAACCTGACAGGTA-AACAATAGAA-CCCATTGTTTAAATCAATGATGGGATTCTGA-GCTGAAGGACAAGGAGTCTACC
s panTro4.chr15              80159661 299 +  99548318 tctagtagtttttatttcttctaca---aataaggcaatgaacatccctcaacattgatcttga-cttacttgggcaagcatacttgttaaatgcatacaccttacaatccagtacatttaaaattgatagctgttggtcaaaattgccccaagaaccacaccaatttaaattcccaacgatatgggaactatttctttgtacccttaccaaattttactttttatgaacctgacaggta-aacaacagaa-tccattgtTTAAATCAATGATGGGATTCTGA-GCTGAAGGACAAGGAGTCTACC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10170550 299 +  10928107 tctagtagtttttatttcttctaca---aataaggcaatgaacatccctcaacattgatcttga-cttacttgggcaggcatacttgttaaatgcatacaccttacaatccagtacatttaaaattgatagatattggtcaaaattgccccaagagccacacccatttaaattcccaacgatatgagaactatttctttgcacccttgccaaATTTTACTTTTTATGAACCTGACAGGTA-AACAATAGAA-CCCATTGTTTAAATCAATGATGGGATTCTGA-GCTGAAGGACAAGGAGTCTACC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17247770 292 - 121039945 tctagtagtttttatttcttctac-------aaggcaatgaacatccctcaacattgatcttga-cttacttgggcaagcatacttgttaaatgcatacaccttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacacccatttaaattcccaaagatatgagaactatttctttgcacccttgccaaATTTTACTTTTTATGAACCTGACAAGTA----AATAGAA-TCCGTTGTTTAAATCAATGATGGGATTCTGA-GCTAAAGGACAAGGAGTCTACC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106722326 299 - 170124641 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaacattgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacaccagtttaaattcccaacaatatgagaactatttctttgcacccttgccaagttttactttttatgaacctgacaggta-aacaatagaa-cccagtgtTTAAATCAATGATGGGGTTCTGA-GCTGAAGGACAAGATGTCTACc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108454929 299 - 171882078 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaacattgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacaccagtttaaattcccaacgatatgagaactatttctttgcacccttgccaaGTTTTACTTTTTATGAACCTGACAGGTA-AACAATAGAA-CCCAGTGTTTAAATCAATGATGGGGTTCTGA-GCTGAAGGGCAAGATGTCTACc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103222627 299 - 162156779 tctagtagtttttatttcttcaaca---aataaggCAATGAACATCCCTCAACATTGATCTTGA-CTTACTTGGGCAAGCATACTTGATAAATGCATACATCTTACAATCCAGTACATTTAAAATTGATAGATGTTGGTCAAAATTGCCCCAAGAGCCACACCAGTTTAAATTCCCAACGATATGAGAACTATTTCTTTGCACCCTTGccaagttttactttttatgaaCCTGACAGGTA-AACAATAGAA-CCCAGTGTTTAGATCAATGATGGGGTTCTGA-GCTGAAGGACAAGATGTCTACC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21144533 299 -  24206276 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaacattgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgtcccaagagccacaccagtttaaattcccaatgatatgagaactacttctttgcacccttgccaagttttactttttatgaacctgacaggta-aacaatagaa-cccagtgtTTAAATCAATGATGGGGTTCTGA-GCTGAAGGACAAGATGTCTACC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22287069 299 + 158406734 TCTAGTTGCTTTTATTTCTTCTACA---AATAAAGCAGTGAACACCCCTCAACATTGATCTTTA-CTTACTTGGGCAAGCATACTTGATAAATTCATACACATCACAATCTAGTATATTTAAAATTGATAGATAACAGTCGCAATTGACCCAAGAGCCACACCAGTTTGAATTCCCAAGTATATGAGAACTATTTCTTTGCACCCTTGCCAAAGTTTACTTTTTAAGAACCTGACAGGTA-AACTAAAGAA-TCCATTGTTTAAATCAATGACGGGATTCTGA-GCTGAAGGGCAAGGAGTCTACC
i calJac3.chr6              I 2236 C 0
s canFam3.chr3               54450885 302 +  91889043 cctagtagttatttcttcttctacaaacaataaggcaatatacacccctctgcatttattttcatttttcttatgcaaaca---ttgacaaatacatattcctcatgatccagtaggtttaaaatggatagatgttggccaaaattgccccaagagtcattctggtcttaattcccaactacatgtgacctatttctccatactcttaccaaactttactttgtatcaatctaataggtaaaaaaatagaatcccattgtttcaatgtgtgataagattctcctactgaatgagAA-AAGTCTACC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I

a score=425244.000000
s hg38.chr15_KI270850v1_alt    377999 311 +    430880 ---------ATATGTTCTTAAGATTGAGTATCT-TTCATGTTAATTGTCcctcttttccccatcatgttccccatcttagaaaacagatccacattagtgtgcaagacaaaa--tgactcctctctcccccattccccgcaatc-----gtcttgttgaacct-aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaacacacttctcacctgaacta-ctgcaatagcctccccta-tgttatctgtgctttaccattca-acacttccca-ccccctggaaagccctgtacctctt
s panTro4.chr15              80159960 309 +  99548318 ---------ATATGTTCTTAAGATTGAGTATCT-TTCATGTTAATTGTCCCTCTTTTCCCCATCACGTTCCCCATCTTAGAAAACAGATCCACATTAGTGTGCAAGACAAAA--tgactcctctctcccccattccccgcaatc-----gtcttgttgaacct-aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaacacacttctcacctgaacta-ctgctatagcct--ccta-tgttatctgtgcttTACCATTCA-ACACTTCCCA-TCCCCTGGAAAGCCctgtacctctt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10170849 313 +  10928107 ---------GTATGTTCTTAAGATTGAGTatct-ttcatgttaattgtcctccttttccccatcatgttccccatcttagaaaatagatccacattagtgtgccagacaaaatttgattcctctctctcccattccccacaatc---aagtcttgttgaacct-aaccttgaaatttacacaaaatctgtccacttattttgcctctattattaccatactagtccaagccaacacacttctcacctgaacta-ctgcaatagcct--ccta-tgttatctgtgctttaccattCA-ACACTTCCCA-CCCCCTGGAAAGCCCTGTACCcctt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17248062 313 - 121039945 ---------GTATGTTCTTAAGATTGAGTATCT-TTCATGTTAATTGTCCCCCTTTTCCCCATCGTGTTCCCCATCTTAGAAAATAGATCCACATTAGCGTGCCAGAAAAAATttgattcctctctctcccattccccacaatc---aagtcttgttgaacct-aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaacacacttctcacctgaacta-ctgcaatagcct--ccta-tgttatctgtgcttTAGCATTCA-ACACTTCCTA-CCCCCTGGAAAGCCCAGTACCcctt
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21144832 309 -  24206276 ---------ATACGTTCTTAAGATTGAATATTC-----TATTAATTGTCCCCCTTTTCCCCATCATGTTCCCCATCTTAGAAAATAGATCCACATTAGTGTGCCAGACAAAATttgattcctctctctcacattccccacaatc---aagtcttgttgaacct-aaccttgaaatgtacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaacacacttctcacctgaacta-ctgcaacagcct--ccta-tgttatctgtgctttaccactcA-ATACTTCCTA-CCCCCTGGAAAGCCCTGTACCCCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22287368 307 + 158406734 ---------ATATGTTCTTAAGACTGAGTATTTTTTCACGTTAATTGTCCCCC-TTTCCCCGTCATGTACCCCATCTTAGAAAACAGATCCACATTAATGTGCCAGACAAAATttgattcctctct------ttccccacaatc---aagtcttgttgaacctaaaccttaaaatttacacaaaatct----acttactttgtctccgttattaccataccagtccaagacaacacactttgcacttgaactacctgcaatagctt--cctgctgttatttgtgcttTGTCATTCA-ATACTTCCTACCCCCCTGGAAAGCCCTGTACCCCTT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54451187 317 +  91889043 CTGTCTTTCTAACTTTTCTAAGATTTAGCATTC--TCTCATTGGTTGTTCTGTTttctcctactat-ccccccatcttaagaagtggatccatttaagtgtgtcagac-aaatttgattctagtctctctcatccgccacaatcagcaagtcctattgaaccc-acttctgaaattcacactaaatctgtccacttgc--cgtttctattgttcccatcctagtccaagccaacacatgcctcacctggacta-cggaaacagctt--ccca---ttaactctgctttacacttAACATACTTCCCA-TCCCACTAAAGCCTTTCCATCCA--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e papAnu2.chr7              103222926   0 - 162156779 C
e macFas5.chr7              108455228   0 - 171882078 C
e rheMac3.chr7              106722625   0 - 170124641 C

a score=812404.000000
s hg38.chr15_KI270850v1_alt    378310 261 +    430880 aaacatcccaagttcaggcccacgccaaggccctgctgtttgttctgctta--atactcctgctc--tggccttaaaccagtttctctacatggctgactacttgttattcagtcttcagcttaaatgctactttct--gagagagaga-----cctcaattgtatgtggggcggcaatt----taatcactaacccctgcccccatcctaatcattccttatc-acat---cccattgctca-gtcttcatattgctgagtataatttgaaat-tgtggcc
s panTro4.chr15              80160269 261 +  99548318 aaacatcccaagttcaggcccacgccaaggccctgctgtttgttctgctta--atactcctgctc--tggccttaacccagtttctctacatggctgactacttgttattcagtcttcagcttaaatgctactttct--GAGAGAGAGA-----CCTCAATTGTATGTGGGGCGGCAATT----TAATCACTAACCCCTGCCCCCATCCTAATCATTCCTTATC-ACAT---CCCATTGCTTA-GTCTTCATATTGCTGAGTATAATCTGAAAT-TGTggcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10171162 261 +  10928107 aaacatcccaagttcaggcccacgccaaggccctgctgtttgttctgctta--atactcctgctc--tggccttaaaccagtttctctacatggctgactacttgttattcagtcttcagcttaaatgttactttct--GAGACAGAGG-----CCTCAATTGTATGTGGGGCGGCAATT----TAATCACTAACCCCTGCCCCCATCCTAATCATTCCTTATC-ACAT---CCCATTGCTTA-GTTTTCATATTGCTGAGTATAATTTGAAAT-TGTggcc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17248375 261 - 121039945 aaacatcccaagttcaggcccacaccaaggccctgctgtttgttctgctta--atactcctgctc--tggccttaaaccagttcctctacatggctgactacttgttattcagtcttcagcttaaatgttactttct--GAGAGAGAGA-----CCTCAATTGTATGTGGGGCAGCAATT----TAATCACTAACCCCTGCCCTCATCCTAATCATTCCTTATC-ACAT---CCCATTGCTTA-GTTTTCATATTGCTGAGTATAATTTGAAAT-TGTggcc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106722625 263 - 170124641 aaacatcccaagttcaggcccatgccaaggtcctgctgtttgctctgcttaagatactcccgctc--tggccttaaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttattttct--gagagataga-----cctcaattgtatgtggggcggcaatt----taataacaaaccccttcccccatcctaatcattccttatc-acat---cccattgctta-gttttcatattgctgagtataatttgaaat-tgtggcc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108455228 263 - 171882078 aaacatcccaagttcaggcccatgccaaggtcctgctgtttgctctgcttaagatactcccgctc--tggccttaaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttattttct--gagagataga-----cctcaattgtatgtggggcggcaatt----taataacaaaccccttcccccatcctaatcattccttatc-acat---cccattgctta-gttttcatattgctgagtataatttgaaat-tgtggcc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103222926 264 - 162156779 AAACATCCCAAGTTCAGGCCCATGCCAAGGTCCTGCTGTTTGCTCTGCTTAAGATACTCCCGCTC--TGGCCTTAAACCAATTTCTCTGCATGGTTGGCTACTTGTTATTCAGTCTTCAgcttaaatgttattttct--gagAGATAGA-----CCTCAATTGCATGTGGGGCGGCAATT----TAATAACAAACCCCTTCCCCCATCCTAATCATTCCTTATCAACAT---CCCATTGCTTA-GTTTTCATATTGCTGAGTATAATTTGAAAT-TGTggcc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21145141 263 -  24206276 AAACATCCCAAGTTCAGGCCCATGCCAAGGTCCTGCTGTTTGCTCTGCTTAAGATACTCCCGCTC--TGGCCTTAAACCAGTTTCTCTGCATGGTTGGCTACTTGTTATTCAGTCTTCAGCTTAAATGTTATTTTCT--GAGAGATAGA-----CCTCAATTGTATGTGGGGCGGCAATT----TAATAACAAACCCCTTCCCCCATCCTAATCATTCCTTATC-ACAT---CCCATTGCTTA-GTTTTCATATTGCTGAGTATAATTTGAAAC-TGTggcc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22287675 259 + 158406734 AAAAATACTAAGTTTAGGTCCACACCAAGGCCCTGCTGTTTGCTCTGCTTACGATACTCCTGCTCTGTGGCCTTAAACCAGTTTCTCTGCATGGTTGGCTACTTGTTATTCAGTCTTCAGATTAAATGTTATTTTCTGAGAGAGAGAGA-----CCTCAATTGCATGTCAGCCAGCAAGT----TAGTCAAATA-----ACCCCTATCCTA---GTTCCTTACC-ATAT---CCCATTGCTTA-GTTTTCATATTACTGAGTATAATTTAAAAT-TGTggcc
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54451504 262 +  91889043 TCATCTACTAACTTCAGATCCATCCCACTTACCCCAGGACATTTCTACTTG------CTCTGCCC--TGGTATTAAATCACTTCCTTTATAAGGCTGGCTTCTCATCATTGGA-----GATATATATGCCACTTCCT--TAGAAAGAGGATCTCCCTTAACAGTATGTGAGGAAACCATTCATGCAATCACTAACCC---TCCCCATGGTG-CCATTCTTTATC-ATGTAGCCCCAGTCCAGAGGCTTTCATGTAACTTAGCATAACCTGAACTATGTGTCC
i canFam3.chr3              C 0 I 1730
e mm10.chr7                  81401067 2019 + 145441459 I

a score=6452117.000000
s hg38.chr15_KI270850v1_alt    378571 2411 +    430880 aggcatggtagctactgcctgtaatcctagcactttgggaggcagaggcgggtggatcacttgaagtcaggagtttaggaccagcccggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattaaccagacatagtggcacatgcccatagtcccagctactcgggaggctgaggcagga-----------------------gaggttgcagtgagccgagattgcaccactgtactccagcctgggcaacagagcaagactccaactcc---------aaaaaaaaaaa--------------------------------------------------------------------------------aa----aTTGTATTAcagtcggcactccctacctgtgggttccacatctttggattcaaccaaccgcagatcaaaagtattttttaaaatgtgtccatattaaacatgtacaga----tttgtcagtattcccgaaacaatacagtataactatttacactgca-ttaggtataagtaatctagaga-----taaagtatatataaaggaggacatgcatgggttagatgcaaatactgtaccattttacatcagggacttcggcatttgtggatttgggttatgcacaggaggtcctggattccctaaagataactagggacaacttttgcttctactccaccgtatttct-------------------tcatagcttttctacaggagagcagacacagtatctgcacttttcacatctgtattcacaacatctagaagagtTTATTA-GTGTTGACTAAAAGAAGTGCAGAATAG-----------------------------TCTTTTCCTATGTGTCCCCTCATCCCTTTGACaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCAGTTGTTAGTCTCATTAATTCCTAAGAAAACTCTG-TAATTCAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatat-ttaaattatataattcaatgg-tttttaatacatctagaattctgcaattgttacaattttagagcattccatcatccccaaaagaaacctgtatccTTtcagacaagatcaggcacactcagggtggtatggctatagacAGAAACCTGTATCCTTTCAGCAGTCACTCTCTGGGGA---tttttt--------tttaagttcagcg----atgtgcaggtttgttatatgagtaaactcgt-------gaatttgttgtacagattattttatcacccaggtgtcaagtccagtacccaatgcttgtttttt-ctgatcctctcccttctcccacccaacatcctcaaatgggcacccaacaccctcaaatgggcaccagtgtctattgttcccttctttgtgtccat-atgtccttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattatggcctccagctccacccatgttcctgcaaaggacatgatctc---cttcttcacggctgtgtgtagtattccatggtgtatacatactacattttctttatccagcctatcattgacaggcatttaggttgattccatgtttttgctattgtgaatagcactgcaatg--------aacatatgtgtgcatgtgtttttatggtaaaacgatttatattccttttggtacatactcagcaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcactacactattttccacaatggctgaactaatttacattccc-accaacagtgtgtaagcgttcccttttcccccccgccacaatcttaccagcatctattatttaactttttaattgtagccatcctgactggtgtgaggtagtaacttactgtggttttgattttcatt--tgttttttgttttgttgtgttgtgacacgaagtcttgctctgtcacccagacttgagtgcagtggcacaatctcggctcaccgcaacctctgcctcccaggttcaaatgattctcatgcctcagcctcccgagtagctgaaattactacgggcgcctgccaccatgcccagctaatttttgtaatttttagtagagacagggcttcactatgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattgtaggcatgagtcactgtgcccagcttgattttc-tctctccaatgatcagttataaagcttttttcatatgcttgttgtccacatgtatgtcttcttttgaaaagtgtct-attcatgtcctttTCAGGACACTATCATttccctctaacctctcccacccctaagcaaccatgaatctattttctgtctctacagatttacctattctggatattgcacataaattagatcatacaatatttaaaa--attttttcacttagcatgtttttaagattcatcattgttttagtttgtatcagaac----------------------ttttttt---------------tttttttttttaagacagggtcttaatc
s panTro4.chr15              80160530 2401 +  99548318 aggcatggtagctcctgcctgtaatcctagcactttgggaggcagaggcgggtggatcacctcaagtcaggagtttaggaccagcccggccaacatggtgaaaccctgtctctaccaaaaatactaaaattaaccagacatagtggcacatgcccatagtcccagctactcgggaggctgaggcagga-----------------------gaggttgcagtgagccgagattgcaccactgtactccaacctgggcaatagagcaagactccaactcc---------aaaaaaaaaaa--------------------------------------------------------------------------------aa----aTTGTATTAcagtcggcactccctacctgtgggttccacatctttggattcaaccaaccgcagatcagaagtattttttaaaatgtgtccatattaaacatgtacaga----tttgtcagtattcccgaaacaatacagtataactatttacactgca-ttaggtataagtaatctagaga-----taaagtatatataaaggaggacatgcatgggttagatgcaaatactgtaccattttacatcagggacttcggcatttgtggatttgggtcatgcacaggaggtcctggattccctaaagataactagggacaactTTTGTTTCTACTCCACCATATTTCT-------------------TCATAGCTTTTCTACAGGAGAGCAGACACAGTATCTGCACTTTTCACATCTGTATTCACAACATCTAGAAGAGTTTATCA-GTGTTGACTAAAAGAAGTGCAGAATAG-----------------------------TCTTTTCCTATGTGTCCCCTTATCCGTTTGAC-----------AAAAAAAAAAAAAAAAAAACAGTTGTTAGTCTCATTAATTCCTAAGAAAACTCTG-TAATTCAAGAAAGTTAACCTTCTGTTACCCATTACACATA--CTTTTTCCTCCTTGGtcacatat-ttaaattatataattcaatgg-tttttaatacatctagaattctgcaattgttacaattttagagcattccatcatccccaaaagaaacctgtatccTTtcagacaagatcaggcacactcagggtggtatggctatagacAGAAACCTGTATCTTTTCAGCAGTCACTCTCTGGGGA----ttttt--------tttaagttcagcgatacatgtgcaggtttgttatatgagtaaactcgt-------gaatttgttgtacagattattttatcacccaggtgtcaagtccagtacccaatgcttgtttttt-ctgatcctctcccttctcccacccaacatcctcaaatgggcacccaacaccctcaaatgggcaccagtgtctattgttcccttctttgtgtccat-atgtccttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattatggcctccagctccacccatgttcctgcaaaggacatgatctc---cttcttcacggctgtgtgtagtattccatggtgtatacataccacattttctttatccagcctatcattgacaggcatttaggttgattccatgtttttgctattgtgaatagcactgcaatg--------aacatatgtgtgcatgtgtttttatggtaaaacgatttatattccttttggtacatactcagcaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcactacactattttccacaatggctgaactaatttacattccc-accaacagtgtgtaagcattcccttcccccccccgccacaatcttaccagcatctattatttaactttttaattgtagccatcctgactgctgtgaggtagtaacttactgtggttttgattttcatt--tgttttttgttttgttgtgttgtgacatgaagtcttgctctgtcacccaggctggagtgcagtggcacaatctcggctcaccgcaacctctgcctcccaggttcaaatgattctcatgcctcagcctcccgagtagctgaaattactacaggcgcctgccaccatgcccagctaatttttgtaatttttagtagagacagggcttcactatgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttc-tctctccaatgatcagttataaagcttttttcatatgcttgttgtccatatgtatgtcttcttttgaaaagtgtct-attcatgtcctttTCAGGACACTATCATttccctctaacctctcccacccctaagcaaccatgaatctattttctgtctctacagatttacctattctggatattgcacataaattagatcatacaatatttaaaa--tttttttcacttagcatgtttttaagattcatcatggttttagtttgcatcagaac------------------------ttttt---------------ttttttttttaaagacagggtcttaatc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10171423 2380 +  10928107 aggagtggtagctcatgcctgtaatcctagcactttgggaggcagaggcgggtggatcacttgaagtcaggagtttgggaccagcccagccaacatggtgaaaccctgtctctaccaaaaatacaaaaattagccaggcatagtagcacacgcccatagtcccagctactcaggaggctgaggcagga-----------------------gaggttgcagtgagctgagattgcgccactgtactccagcctgggcaacagagcgagactccatctcc---aaaaaaaaaaaaaaaaa--------------------------------------------------------------------------------aa----aCTGTATTAcagtcggcactccctacctgtgggttccacatctgtggattcaaccaaccgcagatcaaaaatattttttaaaatgtgtccatattaaacatgtacaga----tttgtcagtattcccgaaacaatacagtataactatttacattgca-ttaggtataagtaatctagagatagtttaaagtatatataaaggaggacatgcatgggttagatgcaaatactgtaccattttacaacagggacttcagcatctgtggatttgggt-atgcacaggaagtcctggattccctacagataactagg---aacTTTTGTTTCTACTCCACCATATTTCT-------------------TCGTAGCTTTTctacaggagagcagacacagtatctgcacttttcacgtctgtattcacaacatctagaagagtTTATTA-GTGTTGACTAAAAGAAGTGCAGAATAG-----------------------------TCTTTTCATATGTGTCCCCTCATCCCTTTGAC-----------CAAAAAAAAAAAAAAAAAACAGTTGTTAGTCTCATTAATTCCTAAGAAAACTCTG-TAATTTAAGAAAGTTAATCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatat-ttaaattatataattcaatgg-tttttaatacatctagaattctgcaattgttacaattttagagcgttccatcatccccaaaagaaacctgtatccTTtcagacgagatcaggcacgctcagggtggtatggccatagacAGAAACCCGTATCCTTTCAGCAGCCACTCCCTGGGGA----ttttt--------tttaagttcagcgatacatgtgcaagtttgttatatgagtaaacttgt-------gaatttgttgtacagattattttatcacccaggtgtcaggtccagtacccaatgcttgtttttt-ctgatcctctcccttctcc---------------------cacccaacaccctcaaatgggcaccagtgtctattgttcccctctttgtgtccat-atgttcttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattatggcctccagctccacccatgttcctgcaac-gacatgatctc---cttcttcatggctgtgtgtagtattccatggtgtatacataccacattttctttatccagcctaccatcgacaggcatttaggttgattccatgattttgctattgtgaatagcactgcaatg--------aacataaatgtgca--tgtttttacggtaaaacgatttacattccttttggtacatactcagtaatgggattgctcggttgaatggaagttgtgtttttagctc-tttgaagaatcactacactattttccacaatggctgaactaatttgtattccc-accaacagtgtgtaagcgttcccttt--ccccccgccacaaccttgccagcatctattatttaactttttaattgtagccatcctgactggtgtgagacagtatcttactgtggttttgattttcatttctgttttttgttttgttttgttgtgagacgaagtcttgctctgtcacccaggctggagtgcagtggcacgatctcggctcaccgcaacctctgcctcccaggttgaaacgattctcatgcctcagcctcctgagtagctgagattactacaggcgcctgccaccatgcccagctaatttttgtaatttttagtagagacagggcttcactacgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcttcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcatgtctccaatgatcagttataaagctttactcatatgcttgttgtccacatgtatgtcttcttttgaaaagtgtct-attcatgtcctttTCAGGACACTATCATttccctctaacctctcccacctctaggcaaccatgaatctattttctgtctctacagatttacctattctggatatttcacataaattagatcatacaa---tttaaa--attttttcacttagcatg-ttttaagattcatcatg--tttagcttgtatcagact----------------------tttatat---------------ttttttttTTTAAAAC-GGGTCTTAATC
i ponAbe2.chr15_random      C 0 M 357
s nomLeu3.chr6               17248636 2383 - 121039945 aggcgtggtagctcatgcctgtaatcctagcactttgggaggcagaggcgggtggatcacttaaagtcaggagtttgggaccagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaaattagccaggcatagtggcacacacccatagtcccagctactcgggaggctgaggcagga-----------------------gaggttgcagtgagccgagactgcgccactgtactccagcctgagcaacagagcgagactccatctccaaaaaaaaaaaaaaaaaaga--------------------------------------------------------------------------------aa----aCTGTATTAcagttggcactccctacctgtgggttccacatctgtggattcaaccaactgcagatcaaaaatattttttaaaatgtgtccatattaaac--gtacagatttttttgtcagtattcccgaaacaatacagtataactatttacactgcatttaggtataagtaatctagagatagtttaaagtatatataatggaggacatgcatgggttaggtgcaaatactgtaccattttacatcagggacttcggcatctgtggatttgagt-atgcacaggaggtcttggattccctacagataactagggacaactTTTGTTTCTACTCCACCATATTTCT-------------------TCATAGCTTTTCTACAGGAGAGCAGACACAGTGTCTGCCCTTTTCACGTCTGTATTCACAACATCTAGAAGAATTTATTA-GTGTCGACTAAAAGAAGTGCAGAATAG-----------------------------TTTTTTCATATGTGTCCCCTCATCCCTTTGAC-----------AAAAGAAAAAA---------AGTTGTTAGTCTCATTAATTCCTAAGAAAA--CTG-TAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatat-ttaaattatataattcagtgg-tttttaatacatccagaattctgcaattgttacaattttagagcattccatcatccccaaaagaaacctgtatccTTtcagacaagatcagccacactcagggtggtatggccatagacAGAAATCTGTATCCTTTCAGCAGTCGCTCTCTGGGGA----ttttt--------ttttagttcagcgatacatgtgtaggtttgttgtatgagtaaactcgt-------gaatttgttgtacagattattttatcacccaggtgtccagtctagtacccaatgcttgtttttt-ctgatcctctcccttctct---------------------cacccaacaccctcaaatgggaaccagtgtctattgttcccctctttgtgtccat-atgtccttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctggattagtttgctaaggattatggcctccagctccacccatgttcctgcaaaggacatgatatc---cttcttcatgactgtgtgtagtattccatggtgtatacataccacattttctttatccagcctaccactgacaggcatttaggttgattccatgtttttgctattgtgaatagcactgcaatg--------aacatatgtatgcatgtgtttttatggtaaaacgatttatattcctttcggtacatactcagtaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcactacattattttccacaatggctgaactaatttatatcccc-accaacagtgtgtaagcatccccttt--ccccccgccacaaccttgcgagcatctattatttaactttttaattgtagccatcctgactggtgtgagatagtatcttactgtggttttgattttcatt--tgttttttgttttgttttgttgtgagacgaagtcttgctctgtcacccaggctggagtgcagtggcacaatctcggctcaccgcaacctctgcctcgcaggttcaaacgattctcatgcctcagcctcctgagtagctgagattactataggcgcctgccaccatgcccagctaatttttgtaatttttagtagaaacagggcttcactatgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcatctctccaatgatcagttataaagcttttttcatatgcttgttgtccaaatgtatgtcttcttttgaaaagtgtct-attcatgtcctttTCAGGAGACTATCATttccctctaacctctcccacccctagacaaccatgaatctattttctgtctctacagatttacctattctggatatttcacataaattagatgatacgatatttaaaa--tttttttcacttagcatgtttttaagattcatcattgttttagcttgtatcagaac-------------------------tttt---------------tttttttttttaagacagggtcttaatc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106722888 2366 - 170124641 agcagtggtagctcatgcccgtaatcctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatggtgaaacc----ctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctacttaggaggctgaggcagga-----------------------gaggttgcagtgagccgggattgcgccactgtactccagcctggtcaacagagtgagacccc----cc---aaaaaaaaaaaaaaaaa--------------------------------------------------------------------------------aaaaaTATTGTATTAcagttggcgctccctacctgtgggttccacatctgtggattcaaccaaccgcagatcaaaaatattttttaaaatgtgtccgcattaaacatgtacagatttttttgtcagtattccct-aacaatacagtataactatttacattgca-ttagatataagtaatctagagatggtttaaagtatatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcagggacttcgacatctgtggatttcggt-atgcacaggaggtcctggattccctacagataaccagggacaacttctgtttctgctcca---tatttct-------------------tcatagcttttctacaggagagcagacacagtgtctgcccttttcacgtttgtattcacaacatctagaagagCTTATTA-GTGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCATCCCTTTGA------------AAAAAAAAA-----------AGTTGTTAGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatat-ttaaattatataattcaatgg-tttttaatacatccagaattctgcaatggttacaattttagagcattccatcatccccaaatgaaacACGCATCCTTtcagatgagatcaggtgcgatcacagtggtatggccatagacAGAAA-CTGTATCCTTTCAGCAGTCTGTAGCTAGGGa--ttttttt--------tttaagttcagcgatacatatgcaggtttgttatatgggtaaactcgtgtcacaggaatttgttgtacaga-----ttatcacccaagagttaagtctattacccaatgcttgtttttttctgatcctctcccttctcc---------------------cacccaacaccctcaaatgggcaccagtgtctattgttcccctctttgtgtccataatgtccgtaccatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattacggcc-----------------tcctgcaaaggacatgatctc------cttcatagc--tgtgtagtattccagggtgtatacgtaccacattttctttacccagcctactactgacaggcatttaggtggattccatgtctttgctatt-tgaatagtgctgcaatg--------aacatacgtgtgcatgtgtttttatggtaaaacgatttatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacactattttccacaatggctgaactaatttatattccc-accaacagtgtgtaagcgttcccctt--tcccccacc-caaccttgccagcatctattatttgactttttaattgcagccatcctgactagtatgagatagtatcttattgtggttttgattttcatttctgttttttgttt-----tgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcatgatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggcgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggctccactatgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcacctctctaatgatcagttataaag-ttttttcatatgcttcttgtccacatgtatgtcttcttttgaaaagtgtctagttcatgtcctttTCAGGACACTATCATttccctcttacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttaccaattctggatatttcacataaattagatcatataata-ttaaaatttttttttcacttagcatgtttttaagattcatcattgttttagcttgtatcagaac--------------ttttttgttttttttaaagccaaataac--tttttttttttgagacagcatctggctc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108455491 2361 - 171882078 agcagtggtagctcatgcccgtaatcctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatggtgaaacc----ctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctacttaggaggctgaggcagga-----------------------gaggttgcagtgagccggaattgcgccactgtactccagcctggtcaacagagtgagactccatctcc---aaaaaaaaaaaaaaaaa--------------------------------------------------------------------------------------aTTGTATTAcagttggcgttccctacctgtgggttccacatctgcggattcaaccaaccgcagatcaaaaatattttttaaaatgtgtccgcattaaacatgtacagatttttttgtcagtattccct-aacaatacagtataactatttacattgca-ttagatataagtaatctagagatggtttaaagtacatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcagggacttcgacatctgtggatttcggt-atgcacaggaggtcctggattccctacagataaccagggacaacttctgtttctgctcca---tatttct-------------------tcatagcttttctacaggagagcagacacagtgtctgcccttttcacgtttgtattcacaacatctagaagagCTTATTA-GTGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTC--ATGTGTCCCCCCATCCCTTTGA------------AAAAAAAAA-----------AGTTGTTAGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatat-ttaaattatataattcaatgg-tttttaatacatccagaattctgcaatggttacaattttagagcattccatcatccccaaatgaaacACGCATCCTTtcagatgagatcaggtgcgatcacagtggtatggccatagacAGAAA-CTGTATCCTTTCAGCAGTCTGTCGCTAGGGa--ttttttt--------tttaagttcagcgatacatatgcaggtttgttatatgggtaaactcgtgtcacaggaatttgttgtacaga-----ttatcacccaagagttaagtctattacccaatgcttgtttttttctgatcctctcccttctcc---------------------cacccaacaccctcaaatgggcaccagtgtctattgttcccctctttgtgtccat-atgtccgtaccatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattacagcc-----------------tcctgcaaaggacatgatctc------cttcatagc--tgtgtagtattccagggtgtatacgtaccacattttctttacccagcctaccactgacaggcatttaggtggattccatgtctttgctatt-tgaatagtgctgcaatg--------aacatacgtgtgcatgtgtttttatggtaaaacgatctatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacactattttccacaatggctgaactaatttatattccc-accaacagtgtgtaagcgttcccctt--tccccaacc-caaccttgccagcatctattatttgactttttaattgcagccatcctgactagtatgagatagtatcttattgtggttttgattttcatttctgttttttgttt-----tgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcataatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggcgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggcttcactatgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcacctctctaatgatcagttataaag-ttttttcatatgcttcttgtccacatgtatgtcttcttttgaaaagtgtctagttcatgtcctttTCAGGACACTATCATttccctcttacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttacctattctggatatttcacataaattcgatcatataata-tcaaaatttttttttcacttagcatgtttttaagattcatcattgttttagcttgtatcagaac--------------ttttttgttttttttaaagccaaataac--tttttttttttgagacagcatctggctc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103223190 2377 - 162156779 aggagtggtagctcatgcccgtaatcctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatggtgaaaccctctctctactaaaaatataaaaattagccaggcatagtggcacatacccatagtcccagctactcaggaggctgaggcagga-----------------------gaggttgcagtgagccgggattgcgccactgtactccagcctggtcaacagagtgagactccatctcc---aaaaaaaaaaaaaaaaa--------------------------------------------------------------------------------aa----attgtattacagTTGGCGCTCCCTacctgtgggttccacatctgtggattcaaccaaccgcagatcaaaaatattttttaaaatctgtccgCATTaaacatgtacagatttttttgtcAGTATTCCCT-AACAATACAGTGTAACTATTTATATTACA-TTAgatataagtaatctagagatggttTAAAGTATATACACAGGAGGACATGCATGGGTTAGATACAaatactgtaccattttacatcagGGACTTCGACATCTGTGGATTTCGGT-ATGCACAGGAGGTCCTGGATTCCCTACAGATAACCAGGGACAACTTCTGTTTCTGCTCCA---TATTTCT-------------------TCATAGCTTTTCTACAGGAGAGCAGACACAGTGTCTGCCCTTTTCACGTCTGTATTCACAACATCTAGAAGAGCTTATTA-GTGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCatccctttg-------------aaaaaaaaa-----------agttgttagtCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTAcacata--ttttttcctccttggtcacatat-ttaaattatataattcaatgg-tttttaataCATCCAGAATTCTGCAATGGTTACAATTTTAGAGCATTCTATCATCCCCAAATGAAACACGTATCCTTTCAGATGAGATCAGGTGCGATCAcagtggtatggccatagacagAAA-CTGTATCCTTTCAGCAGTCTCTCgctaggga---attttt--------tttaagttcagcgatacatatgcaggtttgttatatgggtaaactcgtgtcacaggaatttgttgtacaga-----ttatcaCCCAAGAGTTAAGTCTATTACCCaatgcttgtttttttctgatcctctcccttctcc---------------------cactcaACACTCTCAAATGGGcaccagtgtctattgttcccctctttgtgtccat-atgtccGTACCATTTAGCTCCCAgttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattatggcc-----------------tcctgcaaaggacatgatctc---cttcttcatggc--tgtgtagtattccagggtgtatacgtaccacattttctttaccctgCCTACCACTGACAGGCatttaggtggattccatgtctttgctattgtgaatagtgctgcaatg--------aacatacgtgtgcatgtgtttttatggtaaaatgatttatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacactattttccacaatggccgaactaatttatattccc-accaacagtgtgtaagcgttcccctt--tcccccacc-caaccttgccagcatctattatttgactttttaattgcaGCCATCCTGACTAGTATGAgatagtatcttattgtggttttgattttcatttttgttttttgttt-----tgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcatgatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggtgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggcttcactatgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgatTTTCACCTCTCTAATGATCAGTTATAaag-ttttttcatatgcttcttgtccacatgtatgtcttcttttgaaaagcgtct-gttcatgtccttttcaggacACTATCATTTCCCTCTTACCTCTCCCACCCCTAGGCAACTGtgaatctattttctgtctctacagatttacctattctggatatttcacataaattagatcatataata-tgaaaatttttttttcacttagcatgtttttaagattcatcaTTGTTTTAGCTTGTATcagaacttc--------ctttttttttttttttttaaagccaaataac-ttttttttttttgagacagtatctggctc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21145404 2375 -  24206276 aggagtggtagctcatgccggtaatcctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatagtgaaaccctctctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctactcaggaagctgaggcagga-----------------------gaggttgcagtgagccgggattgtgccactgtactccagcctggtcaacagagtaagactccatctcc---aaaaaaaaa----------------------------------------------------------------------------------------------aaTGTATTAcagttggcgctccctacctgtgggttccacatctgtggattcaaccaaccacagatcaaaaatattttttaaaatgtgtccgcattaaacatgtacagatttttttgtcagtattccct-aacaatacagtataactatttacattgca-ttagatataagtaatctagagatggtttaaagtatatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcaggaacttcgacatctgtggatttcggt-atgcacaggaggtcctggattccctacagataaccagggacaactTTTGTTTCTGCTCCA---TATTTCT-------------------TCATAGCTTTTCTACAGGAGAGCAGACACAGTGTCTGCCCTTTTCACGTCTGTATTCACAACATCTAGAAGAGCTTATTA-GTGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCATCCCTTTGA------------AAAAAAAAA-----------AGTTGTTAGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAATTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatat-ttaaattatataattcaatgg-tttttaatacatacagaattctgcaatggttacaattttagagcattccatcatccccaaatgaaacacgtatccTTtcagatgagatcaggtgcgatcacagtggtatggccatagacAGAAA-CTGTATCCTTTCAGCAGTCGCTTGCTAGGGACTTtttttt--------tttaagttcagcgatacatacacaggtttgttatacgggtaaactcgtgtcacaggaatttgttgtacaga-----ttatcacccaagagttaagtctattacccaatgcttgttttttcctgatcctctcccttctcc---------------------cacccaacaccctcaaatgggcaccagtgtctattgttcccctctctgtgtccat-at-----taccatttagcgcccagttgtgagaacatgtggta-tttgattttgtgatcttgtgttagtttgctaaggattatggcc-----------------tcctgcaaaggacatgatctc---cttcttcatggc--tgtgtagtattccagggtgtatacgtaccacattttctttacccagcctaccactgacaggcatttaggtggattccatgtctttgctattgtgaatagtgctgcaatg--------aacatacgtgtgcatgtgtttttatggtaaaatgatttatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacactattttccacaatggctgagctaatttatattccc-accaacagtgtgtaagcgttcccctt--tcccccacc-caaccttgccagcatctattatttgactttttaattgcagccatcctgactggtatgagataatatcttattgtggttttgattttcatttctgttttttgttt-----tgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcatgatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggcgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggcttcactatgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcatctctctaatgatcagttataaag-ttttttcatatgcttcttgtccacatgtatgtcttcttttgaaaagtgtct-gttcatgtccttttcaagacactatcatttccctcttacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttacctattctggatatttcacataaattagatcatataata-ttaaaatttttttttcacttagcatgtttttaagattcatcattgtttaagcttgtagcagaacttcttttttttttttttttttttttttttaaagccaaataactttttttttttttgagacagtatctggctc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22287934 2467 + 158406734 tggcatggtagctcacgcctgtaatcccagcactttgggaggctgaggtgggtgcatcacttcaagtcaggagtttgggaccagcctggccaacatggtaaaaacttgtctcta--------ataaaacttagctgggtgtagtggcacatgcccatagttccagctacttgggaggctgaggcaggagaatcgtctgaccccaggaagtggaggttgcagtgagctgagactgcaccactgtactctagcctgggcaacagagcaagactccatttca---aaaagaaagagagaaagagagaaaagagaaaagaggaaaaaggagagagagaaagagaaaaagggagggaaggaaggaagggagggagggaATAAATAA----ATTGTATTAcagtcgatcctccctacttgtgggttccacatctgtggattaaacaaatcgcatatcaaaaatatttttt-aaatgcatccatattacacacatacaga----tttgtcagtattccctaaacaatacagtgtaactatttatattgaa-ttaggtgtaagtaatctagagatgatttaaagtagatatacaggaagacatg--tgggttatatgcaaatactgtaccattttacatcagggacttcagcatctgtggatttgggt-atgcacaggaggtcctggatcccctacaaataaccagggaaaactTTTGTTTCTACTCCACTATATGTCTGTAGTTAGAAATGTAAAAATCGTAGCTTTTCTACaggacagaagacacagtatctgccctgttcacatctgtatccataacacctagaacagtTTATTAGGTGTTG----AAAGAAGTGCAGAACAGTTGTGTGTGGTTTTTTTTTTTTAACAGTTTTTTTTCATATGTGTCCCC----CGCTTTTA------------AAAAGAAAA-----------AGTTG---GTCTCATTAATTCCTAAGAAAACTC------TTTAAGAAAGTTAACCTACTGTTACCCATTACACAGATTTTTTTTCCTCCTTAGTCACattcacctaattatataattcaatggttttttaatacattcagaattctggaatcattacaattttagtgtactccatcatccccaaaagaaacctgtatccTTTCAGACGGGATCAGGTACACTCAGGGTGATAAAGCTGTAGACAGAAACCTGTATCCTTTCATCAGCTGCTCTCTGGGAA--TTTTTTTTTTTAACAtttaagttcagtggtacatgtgcaggtttgttacgcaggtaaactcatgtcacaggaatttgctgtacagattattttaccacccaggaattacatccagtacccaatgctt-tttttt-ctgatcctctctcttctcc---------------------cacccaccacactcaaatagaccgcagtgtctattgttaccctcttcgtgtctat-atgtcctcattatttagctcccacttgtgagaac--gtggtattttgattttccgatcctgtgttagttcgctaaggattatggcctccagctctaaccatgttcctataaagggcatgatctcatccttcttcgtggc--tgtgttgtattccatggtgtgtgggtaccacattttctttatctagtctactactgatggacatttaggttgattgcatgtctctactattgtgaacggtgctgcaatactgttcacaatatatgtgtgtatgtgtttttatggtagaacgatttatattcctttgggtatatacccagtaatgggattgctgggttgaatgt-agttctgtttttaactcttttgaggaatcacgacattgttttccacaatggttgaactaatttatattcccaatcaacagtgtgtaagcattcccctt--tccccgctaacaacctt--------------------------------------ctggtgtgaatgagatggtatcttattgtggctttgattttcatttctgtttttt---------tgttgtgagacaaagtcttgccctgtcacccaggatggagtgcagtggcatgatctccgctaactgcaatctctgcctcccaggatcaaatgattctcatgcctcagcctcccatgtagctggggt---tacaggtgcccgcc-ccaggtccagctaatttttatagtttttagtagagatggggcttcaccatg-ttggccaggctggtcttaaactcctgacttcaggtgatctgcccacc------tcccaaagtcctggaattataggcataagccactgcgccaagcttgagtttca----tctaattatcagtaataaagctttcttcatatgcttattgtcaacatgtatgtcttcttttgaaaagtgtct-gttcatatcctttTTAGGACACTATCATttccctctaacctcttc--cctcgaggcaaccatgaatctattttctgtctctgcagatttacctattctggatatttcacataaattagatcatacaatgtttaaaaaaattttttcacttagcatg-ttttaaaattcctaattgttttagcatataccagaac---------------------------tt---------------cttttttgtgtgtgaaagggtgtcactc
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I

a score=271205.000000
s hg38.chr15_KI270850v1_alt    380982 116 +    430880 tgtcacccaggctggagtgcaagtggcactatcttggctcactgcaacctccacttcccaggttcaagccatcctcccacctcacccttctaattagctgaagctacaggcgtgtg
s panTro4.chr15              80162931 116 +  99548318 tgtcacccaggctggagtgcaagtggcactatcttggctcactgcaacctccacttcccaggttcaagccatcctcccacctcacccttctaattagctgaagctacaggcgtgtg
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17251019 116 - 121039945 tgtcacccaggctagagtgcgagtggcactatcttggctcactgcaacctccacttcccaggttcaagccatcctcccatctcacccttctaattagctgacactacaggcgtgtg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106725254 115 - 170124641 tgtcacccaggctggagtgc-agtggcactatattggctcactgcaacctctacttcccaggttcaagccatcctcccacctcacccttccaatcagctgacactacaagtgtctg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108457852 115 - 171882078 tgtcacccaggctggagtgc-agtggcattatcttggctcactgcaacctctacttcccaggttcaagccatcctcccacctcacccttccaattagctcacactacaagtgtgtg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103225567 115 - 162156779 tgtcacccaggctggagtgc-agtggcactatcttggctcactgcaacctctacttcccaggttcaagccatcctcccacctcacccttccaaTTAGCTGacactacaagtgtgtg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21147779 115 -  24206276 tgtcacccaggctggagtgc-agtggcactatcttggctcactgcaacctctacttcccaggttcaagccatcctcccacctcacccttccaattagctgacactacaagtgtgtg
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22290401 115 + 158406734 tgtcacccaggctagagtgc-agtggcattatcttggctgactgcaacctctacctcccaggttcaaaccatcctcccacttcagcctacttattagttgacactacaggtgtgtg
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I
e ponAbe2.chr15_random       10173803 357 +  10928107 M

a score=1229621.000000
s hg38.chr15_KI270850v1_alt    381098 416 +    430880 ccaccacatccagctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtctcgaactctggctcaattgatccgcccgcctcagcctcccaaagtgcttggattacaagcaggagccaccacgcccagccagaacttcagttatttttattgccaaataacattttattgaatggatatatatatgggtataccctggagacactgcaggttcagttgcagaccacctcaaagtgaatactacaata----gag--tcacaacctttttggtttcccagtgcacatggaagttgtttttaggccaggcatggtggctcacgcctgtattcctag--cactttgggaggcagagatgggcggatcacttgagctcatgagtttgagaccagcctaggctacatggtg
s panTro4.chr15              80163047 416 +  99548318 ccaccacatccggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtctcaaactctggctcaattgatctgcccgcctcagcctcccaaagtgcttggattacaagcaggagccaccacgcccagccagaacttcagttatttttattgccaaataacattttattgaatggatatatatatgggtataccctggagacattgcaggttcagttccagaccacctcggggggaatattgcaata----gag--tcacaacctttttggtttcccagtgcatatggaagttgtttttaggccaggcatggtggctcacgcctgtattcctag--cactttgggaggccgagatgggcggatcacttgagctcatgagtttgagaccagcctaggctacatggtg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10174160 415 +  10928107 ccaccacatccggctaatttttgta-tttttgtagagacagggttttgccatatttcccaggctggtctcgaactctggctcaattgatccgcccgccccagcctcccaaagtgcttggattacaggcaggagccaccacacccagccagaacttcagttatttttattgccaaataacattttattgaatgg----atatatgggtataccttggagatattgcaggttcagttccagaccacctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatatggaagtcgtttttaggccaggcatggtggctcacgcctgtattcctaa--cactttgggaggctgagatgggcggatcgcttgagctcatgagtttgagaccagcctaggctacatggtg
i ponAbe2.chr15_random      M 357 C 0
s nomLeu3.chr6               17251135 416 - 121039945 ccaccacatccggctaatttttgcattttttgtagagatagggttttgccatatttcccaggctggtctcgaactctggctcaattgatccgcccacctcagcctcccaaagtgcttggattacaggcaggagccaccacgcccagccagaacttcagttatttttattgccaaataacattttattgaatgg----atatatgggtataccttggagatattgcaggttcagttccagacgacctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatattaaagttgtttttaggccaggcgtggtggctcacgcctgtattcctag--cactttgggaggccaagatgggcggatcgcttgagctcatgagtttgagaccagcctaggctacatggtg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106725369 416 - 170124641 ccaccacatctggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtgtcgaactctggctcaagtaatccgccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccacgcccagccagaatttcatttctttttattgccaaataacattttattgaacgg----atataTGggtacaccttggagatactgcgggttcagttccagaccacctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatacgaaagttgttttttggccaggcatgatggctcacgcctgtactcctag--cactttgggaggccgagatgggcagatcgcttgagctcatgagtttgagaccagcctaggctacatggtg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108457967 418 - 171882078 ccaccacatctggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtgtcgaactctggctcaagtaatccgccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccatgcccagccagaatttcatttctttttattgccaaataacattttattgaatgg----atatatgggtacaccttggagatactgcgggttcagttccagaccacctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatacgaaagatgttttttggccaggcatgatggctcacgcctgtactcctagcacactttgggaggccgagatgggcagatcgcttgagctcatgagtttgagaccagcctaggctacatggtg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103225682 416 - 162156779 ccaccacatccggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtgtcaaactctggctcaagtaatccgccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccacgcccagccagaacttcatttctttttattgccaaataacattttattgaatgG----ATATATGGGTACACCTTGGAGATACTgcgggttcagttccagaccacctcaaagtgaatattgcaataaagtgag--tcacaacCTTTTTGGCTTCCCAGTGCATACGAAAGttgttttttggccaggcatgatggctcacgcctgtactcctag--cactttgggaggccgagatgggcagatcacttgagctcatgagtttgagaccagcctaggctacatggtg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21147894 406 -  24206276 ccaccacatccggctaatttttgtattttttgtagagatagggttttgccatatttcccaggttggtatcgaactctggctcaagtaatccgccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccacgcccagccagaacttcatttctttttattgccaaataacattttattgaatgg----atataTGggtacaccttggagacactgcgggttcagttccagaccacttcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatacgaaagttgttttttggccaggcatgatggctcacgcctgtactcctag--cactt----------agatgggcagatcgcttgagctcatgagtttgagaccagcctaggctacatggtg
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22290516 417 + 158406734 ccaccactcctggctaattttcatagtttttgtagagatggggttttgtcatgttttccaggctggtcttgaactctggctcaagcaatctgccctcctcagcctcccaaagtgcttggattacaggcgtgagccaccgtgcctagacagaacttcatttctttttattgccaaataacattttattgaatgg----atatATGggtataccttggagatattctaggttcagtcccagaccacctcaaagtgaatattccaataaagttagtttcagaaccttttt-gtttcccagtgcatatgaaagttatttttaggccatgtatggtggctcatgcctgtaatcccag--cactttgggaggccaaggtgggcggatcacttgagctcatgagtttgagaccagcctaggcaacaaggtg
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I

a score=515447.000000
s hg38.chr15_KI270850v1_alt    381514 230 +    430880 aaaccccatctctaccaaaaat----------acagggactggtacggcatgcctgtaatcccagctacctaggagcttgaggtggaaggatggcttgagcctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctggatgacagagccagatattgtctc----aaaaaaaaaaaaaaaaagttaatttttgtattatagtctattaaatgtgtaatagcattgat
s panTro4.chr15              80163463 224 +  99548318 aaaccccatctctaccaaaaat----------acagggactggtacggcatgcctgtaatcccagctacctaggagcctgaggtgggaggatggcttgagcctgggaggcagaagttgcagtgagccaagattacactactgcactccagcctggatgacagagccagatattgtctc----------aaaaaaaaaaagttaatttttgtattatagtctattaaatgtgtaatagcattgat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10174575 229 +  10928107 aaaccccatctctaccaaaaat----------acaggga-----attacatgcctgtaatcccagctacctaggagcctgaggtgggaagatggctcgagcctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtctcaaaaaaaaaaaaaaaaaaaaagttaatttttgtattatagtctattaaatgtgtaatagcattgat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17251551 228 - 121039945 aaatcccatctctaccaaaaat----------acagggaatggtagggcatgcctgtaatcccagctacctaggagcctgaggtgggaggatggcttgagcctgggaggcagaggttgcagtgagctaagattatactactgcactccagcctgggtgacagggccagatattgtctc------aaaaaaaaaaaaaaagttaattttcgtattatagtctattaaatgtgtaatagcattgat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106725785 236 - 170124641 aaatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctatctaggagcttgaggtgggacgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtct-------aaaaaaaaaaaaaaagtt-atttttatattatagtctatcaaatgtgtaatagcattgat
i rheMac3.chr7              C 0 I 3583
s macFas5.chr7              108458385 237 - 171882078 aaatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctatctaggagcttgaggtgggacgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtct------aaaaaaaaaaaaaaaagtt-atttttatattatagtctatcaaatgtgtaatagcattgat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103226098 241 - 162156779 aaatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctatctagGAGCTTGAGGTGGGAcgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtctt--aaaaaaaaaaaaaaaaaaagtt-atttttatattatagtcTATCAAATGTGTAATAGCAttgat
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21148300 236 -  24206276 aaatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctacctaggagcttgaggtgggacgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtct-------caaaaaaaaaaaaaagtt-atttttatattatagtctattaaatgtgtaatagcattgat
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22290933   0 + 158406734 C
e canFam3.chr3               54451766 1730 +  91889043 I

a score=552806.000000
s hg38.chr15_KI270850v1_alt    381744 337 +    430880 gtctttttaagaagtacatatca-taattttaaaacacttcattgctaaagaatcctaacaattgggccgggcgcggtggttcacgcctgtaatccgagcactttggaaggtggccaaagtgccgaggtgggcagattacaaggtcaggagatcgagaccatccgggctaacatggtgaaaccctgtctctactaaaaatacaaaaaaattagccgggcatggtggcacatgcctgtggtcccagctactcgggaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccaagattgcgctgctacactccatcctggaca
s panTro4.chr15              80163687 337 +  99548318 gtctttttaagaagtacatatca-taattttaaaacacttcattgctaaagaatcctaacaattgggccgggcgcggtggttcacgcctgtaatccgagcactttggaaggtggccaaagtgccaaggtgggcagattacaaggtcaggagatcgagaccatccggcctaacatggtgaaaccctgtctctactaaaaatacaaaaaaattagctgggcatggtggcacatgcctgtggtcccagctactcgggaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccaagattgtgctgctacactccatcctggaca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10174804 327 +  10928107 gtctttttaagaagtacatatcgttaattttaaaacacttcattgctaaagaatcctaacatttgggccgggcgcagtggctcacgcctgtaatcccagcactttggaag-----------gccaaggtgggaagatgaccaggtcaggagatcaagaccctcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggcatggtggcacatgactgtggtcccagctactcgggaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccaagattgcgctgctacactccaccttgggca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17251779 321 - 121039945 gtctttttaagaagtaca------taattttaaaacacttcattgctaaagaatcctaacaattgggccgggcgcggtggctcaggcctgtaatcccagcactttgggag-----------gccgaagtgggcagattacgaggtcaggagatcgagactatcctggctaacacggtgaaaccctgtctctactaaaaatacaaaaacattagccgggcatggtggcacatggctgtggtcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagattgcgctgctacactccaccctaggcg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108458622 326 - 171882078 gtctttttaaaaagtacatatca-taattttaaaacacttcattgctaaagaatcctaacaattgggccaggtacggtggctcacgcctgtcatcccaacactttgggag-----------gccaaggcaggcagattaagaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattaactggacatggaggcgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaagctgggatgcagaggttacagtgaggcaagactgcgctgctgcactccatcctgagtg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103226339 326 - 162156779 gtctttttaaaaagtacatatca-taattttaaaacacttcatTGCTAAAGAATCCTAAcaattgggccaggtgcggtggctcacgcctgtcatcccagcactttgggag-----------gccgaggcaggcagattaagaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattaactggacatggaggcacatgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaagctgggatgcagaggttacagtgaggcaagactgcgctgctgcactccatcctgagtg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21148536 326 -  24206276 gtctttttaaaaagtacatatca-taattttaaaacacttcattgctaaagaatcctaacaattgggccaggtgcggtggcttacgcctgtcatcccagcactttgggag-----------gccgaggcaggcagattacaaggtcaggagatcgagaccatcctggctaacacagtgaaaccacgtctctactaaaactacaaaaaaattaactggacatggaggcacacgcccgtagtcccagctactcaggaggctgaggcgggagaatcacttgaagctgggatgcagaggttacagtgaggcaagactgcgctgctgcactccaccctgagtg
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22290933   0 + 158406734 C
e canFam3.chr3               54451766 1730 +  91889043 I
e rheMac3.chr7              106726021 3583 - 170124641 I

a score=5284746.000000
s hg38.chr15_KI270850v1_alt    382081 2350 +    430880 acagagcgatactccgtctcaaaaaaagaaaa--------------------------------------------------------------aagaaacttaataat----tatcagagacttcagtgagtcataatcttattgctggtggaggggtcttgcctcaatgtgcatggctgctgac--ataagggtggtggttgctgaaggctgggttaactgcggcaatttct-----taagacaaccatgatgtttgccgcatagttcgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgataacattttacctaccataggagaactttcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaactttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatctgcaccaggagtaga-ttctatcaataaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaatcctacttctcttgctatttccaccacgtgtgtagttacttcctccactgaagcagtgagaacccctcaaagtcatctatgaagtttggaatcaacttcttccaaattcctattcatgttaatatttttacctcctcccatgcatcacaaatgttcttaacagtatctagaataatgaatcctttccagaaggttttcccagatccatcaaaggaataactatcaatggcagctctagccttatgaaatgtatttcttaaataataagacttgaaagtaaaaattactccttgatccataggctgcaaaactgatcttgtgtcagcaggcatgaaatcattaatctccttgtacatctccatcaaagctcgagtgaccaagt------------------gcattgttaatgagcagtaatattatgaaaggaatcccttcttgtctgtacagtaagtctcaacagtgggctttaaacattcagttagccatagtgcaaacagatgtgctgtcatgactttattgttccatttatagagcacaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcggtaagcactggcctcaactttaaagttaccagtttcattagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctctagctaggaaagtcctagatggcatcttcttccaagagaaggctgttttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcttctccatcagcacttgctgcttcatcttgcacatttatgttacggagacagcttcttcccttaaac--------ctcatgaacc--aa------aaa-------aaaagaaaagaaaagaaaagaaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctcag-----aagagtgttagggcc-ttcctctggattaagttttggcataagggaatgttgtggctgatctgatcttctatctcgactactcaaactttcccatatcagcaaaaagcctgtcttgctttcttatcattcatgtgcttacctgagtagcccttttagtttactgcaggaacttgtgccttgcattcacagcttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgtcttcctcactaagcttcatcatttctagtttttgatgtaaactgagacacatgtgactcttcccttcacttgaacacttagaggccattgtagggttattaattttcctaatttcaattttgttgtgtgtcaggaaagagggaggcccaag-aaagtgggagagagacaggagaacggccgactggtggagcagtcacagcatacacaaagtttatcaa-ttaagttcaccatcttacatgggaatggtttgtggcatgccaaaacaattacaa-tagcagcaaagcaac-agt-----aaaataagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tatctgtgaggtgtgat-aaaataaagcacaataatatgaggtatgcctgtactacattctgttcatccattcatcaccagttaatagacatttggattgtttccacatttgggatattatgaacgacac------------------------------------tgtt--a---------------caaatgcccacctataagtttttgtatgaacattcgttttcatttc------tcttaa
s panTro4.chr15              80164024 2360 +  99548318 acagagcgatactccgtctcaaaaaaagaaaa--------------------------------------------------------------aagaaacttaacaat----tatcagagacttcagtgagtcataatcttattgctggtggaggggtcttgcctcaatgtgcatggctgctgac--ataagggcggtggttgctgaaggctgggttaactgtggcaatttcttaaaataagacaaccatgatgtttgccgcatagttcgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgataacattttacataccataggagaactttcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaactttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatctgcaccaggagtaga-ttctatcaataaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaatcctacttctcttgctatttccaccaccagtgtagttacttcctccactgaagcagtgagaacccctcaaagtcatctatgaagtttggaatcaacttcttccaaattcctattcatgttaatattttaacctcctcccatgcatcacaaatgttcttaacagtatctagaataatgaatccttttcagaaggttttcccagatccatcaaaggaataactatcaatggcagctctagccttatgaaatgtatttcttaaataataagacttgaaagtaaaaattactccttgatccataggctgcaaaactgatcttgtgtcagcaggcatgaaatcattaatctccttgtacatctccatcaaagctcgagtgaccaagt------------------gcattgttaatgagcagtaatattatgaaaggaatccctttttgtctgtgcagtaagtctcaacagtgggctttaaacattcagttagccatagtgcaaacagatgtggtgtcatgactttatt-ttccatttatagagcacaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaactttaaagttaccagtttcattagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctctagctaggaaagtcctagatggcatcttcttccaagagaaggctgttttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcttctccatcagcacttgctgcttcatcttgcacatttatgttacggagacagcttcttcccttaaac--------ctcatgaaccaaaa------aaa-------aaaaaaaaagaaaagaaaagaaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctcag-----aagagtgttagggcc-ttcctctggattaagttttggcttaagggaatgttgtggctgatctgatcttctatctcgactactcaaactttcccatatcagcaaaaagcctgtcttgcttttttatcattcatgtgcttacctgagtagcccttttagtttactgcaggaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaagcttcatcatttctagtttttgatgtacactgagacacatgtgactcttcccttcacttgaacacttagaggccattgtagggttattaattttcctaatttcaattttgttgtgtgtcaggaaagagggaggcccaagaaaagtgggagagagacaggagaacggccgactggtggagcagtcacagcatacacaaagtttatcaa-ttaagttcactatcttgcatgggaatggtttgtggcatgccaaaacaattacaa-tagcagcaaagcaac-agt----aaaaaaaagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tatctgtgaggtgtgat-aaaataaagcacaataatatgaggtacgcctgtactacattctgttcatccattcatcaccagttaatagacatttggattgtttccacatttgggatattatgaacgacac------------------------------------tgttaca---------------caaatgcccacctataagtttttgtatgaacatacgttttcatttc------tcttaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10175131 2355 +  10928107 acagagcaatactccgtctcaaaaaaagaaaa--------------------------------------------------------------aagaatcttaacaat----gatcggagacttcagtgagtcataatcttattgctggtggagggttcttgcctcaatgtgcatggctgctgacttataagggtggtggttgctaaaggctgggttaactgtggcaatttcttaaaataagacaatcatgatgtttgccacatagttcgattcttcctttcatgaaagatttctctgtatcatgcgatgctgtttgatagcattttacctaccacaggagaactctcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatctgcaccaggagtaga-ttctatcaagaaaccattcacctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcgaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccaccacctatgtagttacttcctccactgaagtagt--gaatccctcaaagtcatccatgaagtttggaatcaacttcttccaaattcctattcatgttaatatttttacctcctcccatgaatcacaaatgttcttaacagcatctagaataatgaatcctttccagaaggttttcccagatccatcaaaggaataactatcaatggcagctctagccttatgaaatgtatttcttaaataataagacttgaaag-aaaaattactccttgatccataggctgaaaaactgatcttgtgtcagcaggcatgaaatcattaatctccttgtacatctccatcaaagctcgagtgaccaagt------------------gcattgttaatgagcagtaatattatgaaaggaatccctttttgtctgggc----agtctcaacagtgggctttaaacattcagttagccatcgtgcaaacagatgtgctgtcatgactttattgttccatttatagagcaaaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaactttaaagttgccagcttcactagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctctagctaggaaagtcccagatggcatcttcttccaagagaaggctgttttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcctctccatcagcacttgctgcttcatcttgtacatttatggtatggagacagcttcttcccttaaac--------ctcatgaaccaaag------aaa-------aaaaaaaaaaaaaggaaaagaaaaagaaaaacctcacgaaccaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctcgg-----aagggtgttagggcc-ttcctctggattaagttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaaactttcccatatcagcaaaaagcctgtcttgctttcttatcattcatgtgcttaccggagtagcccttttagtttactgcaggaacttgtgctctgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaagcttaatcatttctagtttttgatgtaaactgagagacatgtgactcttcccttcacttaaacacttacaggtcattgtagggttattaatttgcctaatttcaattttgttgtgtgtcaggaaatagggaggcccaagaaaagtgggagagagacgggagaacggctgactggtggagcagtcacagcacacacaaagtttatcaatttaagttcaccatcttacatgggaatggtttgtggcatgccaaaacaattacaa-tagtggcaaagcaat-agt----aaaaaaaagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tatctgtgaggtgtgat-aaaataaagcacaataatatgaggtatgcctgtactacattctgttcatccattcatcaccagttaatagacatttggattgtttccacatttgggatattatgaacaacac------------------------------------tgtt--a---------------aaaatgtccacctacaagtttttgtatgaacatgcgctttcatttc------tcttaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17252100 2343 - 121039945 acagagtgatactctgtctcaaaaaaagaaaa--------------------------------------------------------------atgaatcctaacaatttgatatcagagacttcagtgagtcataatcttattgctggtggaggggtcttgcctcaatgtgcatggctgctgacttaaaagagtggtggttgctgaaggctgggttaactgtggcaatttcttaaaataagacaaccatgatgcttgctgcatagttcgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgatagcattttacctaccacaggacagctttcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatatgcaccaggagtaga-ttctatcaacaaaccattcatcagtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaagctccacttttaattctacttctcttgctatttccaccatctatgtagttacttcctccactgaagtagt--gaacccctcaaagtcatccatgaagtttggaatcaacttcttccaaattcctattcatgttaatatttttacctcctcccatgaatcacaaatgttcttaacagcatctagaataatgaatcctttccagaaggttttcccagatcc-tcaaaggaataactatcaatggcagctctagccttatgaaatgtatttcttaaataataagacttgaaagtaaaaattattccttgatcc--aggctgcaaaactgatcttgtgtcagcaggcatgaaatcattaatctccttgtacatctccatcaaagcttgagtgaccaagt------------------gcattgttaatgagcagtaatattatgaaaggaatccctttttgtctgcgcagtaagtctcaacagtgggctttaaacattcagttagccatagtgctaacagatgtgctgtcatgact-------------------gcacaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatgttcagtaagcactggcctcaactttaaagttgccagcttcattagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctttagctaggaaagtcctagatggcatcttcttccaagagaaggctgttttcatctgcattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcctctccatcagcacttgctgcttcatcttgcatatttatgttatggagacagcttcttcccttaaac--------ctcatgaaccaaaa------aaaaagaaagaaaaaaaaagaaaagaaaagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctccg-----aagagtgttagggcc-ttcctctggattaagttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaaactttcccatatcagcaaaaagcctgtcttgctttcttatcattcatgtgcttaccagagtagcccttttagtttactgcaggaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaagcttaatcatttctagtttttgatgtaaactgagagacctgtgactcttcccttcacttgaatacttagaggccattgtagggttattaatttgcctaatttcaattttgttgtgtgtcaggaaatagggaggcccaagaaaagtgggagagagacaggagaacggccaactggtggagcagtcacagcatacacaaagtttatcaa-ttaagttcaccatcttacatgggaatggtttgtggcatgccaaaacaattacaa-tagtggcaaagcaat-agt----aaaaaaaagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacacacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tgtctgcgaggtgtg------ataaagcacaataatatgaggtatgcctgtactacattctgttcatccattcatcaccagttaatagacatttggattgtttccacatttgggatattatgaacaacac------------------------------------tgtt--a---------------caaatgcccacctacaagtttttgtatgaacatgcgttttcatttc------tcttaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108458948 2338 - 171882078 acagagcaatactccgtctccaa-----aaaa--------------------------------------------------------------aagaatcctaacaat----tatcagagacttcagtgagtcataatctcattgctggtggacaggtcttgcctcaatgtgcatggctgctgacttataagggtggtagttgctaagggttgggttaactgtggtaatttcttaaaatcagacaaccatgatgtttgcttcatagttggattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaactttcaaaattggagtcaatcctctcaaactctgcctctgctatatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatgtgcaccaggagtaga-ttatatcaagaaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccaccacctatgtagttacttcctccaccgaagtagt--gaacccctcaaagtcatccatgaagtttggaatcagcttcttccaaattcctgttcatgttaatattctgacctcctcccatgaatcacaaacgttcttaagagcatctagaataatgagtcctttccagaaggttctcccagatccatcaaaggaataactatggatggcagctctagccttattaaatgtattttttcaatggtaaaacttgaaagtaaaaattactccttgatccacaggctgcaaaacttatcttgtgttagcaggcatgaaatcattaatctctttgtacatctccatcagagctcgagtgaccaagt------------------gcattgttagtgagtagtaatattatgaaaggaatccctttttgtctgggcaggaagtctcaacagtgggctttaaacattcagttaaccatagtgcaaacagatgtgctgtcatgactttattgttccatttatagagcacagggagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaac-ctgaagtcgccagcgtcattagcctg-taacaagataatcagcctgttgttcttcaaagctttgaagccagaaactgacttttcctttctagctaggaaagtcctagatggcatcttcttccaagagaaggctattttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacctgctgcagcttctccatcagcacttgctgcttcatcttgcacatttatgttatggagacagattcttcctttaaac--------ctcatgaaccaaaa--------------------------aaaagaaaagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttctgcagcttcctcacctctctcagccttctcag-----aagagtgctggggcctttcctctggatcaggttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaatctttcccatatcagcaaaaagtctgtcttgctttcttatcattcatgtgcttaccggagtagcccttttagttcactgcaagaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaaaattaatcatttctagtttttgatgtaaactgagagacatgtgactcttcccttcacttgaacacttagaggccactatagggttattaatttgcctactttcaattttgttgtgtctc-------agggaggcccaagaaaagtaggagagagacaggagaacggccaactggtggagcagtcacagcaaacacaacgtttatcaa-ttaagttcaccatcttacacggaaatggtttgtggcacgccaaaacaattacaagaagtagcaaagcaat-agt-----aaaaaaagttggaaatattggaagaattatcagaatgtggcaaagaaacatgaaggaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatctgtataaaatgctgttatctgtgaagcatgat-aaaataaagcaccataatatgaggtatgcctgtactacattctattcatccattcatcaccagttgatagacatttgggttgtttccacatttgggatattatgaacaacac------------------------------------tgtt--a---------------taaatgcccatgtacaagtttttgtatgaacgtgcgttttcatttc------tcttaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103226665 2351 - 162156779 acagagcaatactccgtctccAA-----GAAA--------------------------------------------------------------AAGAATCCTAACAAT----TATCAGAgacttcagtgagtcataatctcaTTGCTGGTGGacgggtcttgcctcaatgtgcATGGCTGCTGACTTATAAGGGTGGTAGTTGCTAAGGGTTGGGTTAactgtggtaatttcttaaaatcagACAACCATGATGTTTGCTTCATAGTTGgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaactttcaaaattggagtcaatcctctcaaactctgcctctgctatatcaactaagtttatgtggaaattctaaatcctttgttgtct--tCAACAAAAATGTTCACAGCATGTGCACCAGGAGTAGA-TTATATCAAGAAACCATTCATCTGTAAGAAGCAGTTCATc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccaccacctATGTAGTTACTTCCTCCACCAAAGTagt--gaacccctcaaagtcatccatgaagtttggaatcagcttcttccaaattcctgttcaTGTTAATAttctgacctcctcccatgaatcacaaatgttcttaagaGCATCTAGAATAATGagtcctttccagaaggttttcccAGATCCATCAAAGGAATAACTATGGATGGCAGCTCTAgccttattaaatgtattttttcaatagtaaaacttgaaagtaaaaattactccttgatccacaGGCTGCAAAACTTAtcttgtgttagcaggcatgaaatcattaatctctttgtacatctccatcagagctcgaGTGACCAAGT------------------GCATTattaatgagcagtaatattATGAAAGGAATCCCTTTTTGTCTGGGCAGgaagtctcaacagtgggctttaAACATTCAGTTAACCATAGtgcaaacagatgtgctgtcatgactttattgttccatttatagagcacagggagagtagatttagcatgtttcttaagggccctagaatCTTCAGAATGGTCAGTAAGCACTGGCCTCAAC-CTGAAGTCGCCAGCTTCATTAGCCTG-TAACAAGATAATCAGCCTGTTGTTCTTCAAAGCTTTGAAGCCAGAAACTGACTTTTCCTGTCTAGCtaggaaagtcctagatggcatcttcttccaagagAAGGCTATTTTCATCTACATTGAGAATCTGTTGTTGAGTGTAGCCATCTTaccaatgatcttagctagatcttctgggtaacctgctgcagcttctccatcagcacttgctgcttcatcttgcacatttatgttatggagacagaTTCTTcctttaaac--------ctcatgaaccaaaa------aaa-------aaaaaaaaagaaaagaaaagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttctgcagcttcctcacctctctcagccttctcAG-----AAGAGTGCTGGGGCCTTTCCTCTGGATcaggttttggcttaagggaatgttgtggctgatcTGATCTTCTATCTAGACTACTCAATCTTTCCCATATCAGCAAAAAGTCTGtcttgctttcttatcattcatgtgctTACCGGAGTAGCCCTTTTAGTTCACTGCAAGAACTTGtgctttgcattcacaacttgactATTTGGAACAAGAGGCCTAACTTTCGGCCTACCACAGCTttcgacatgccttcctcactaaaactaatcatttctagtttttgatgtAAActgagagacatgtgactcttcccttcacttgaacacttagaggccactaTAGGGTTATTAATTTGCCTACTTTCAattttgttgtgtctc-------agggaggCCCAAGAAAAGTAGGAGAGAGACAGGAGAACGGCCAACTGGTGGAGTAGTCACAGCAAACACAACGTTTATCAA-TTAAATTCACCATCTTACATGGAAATGGTTTGTGGCACGCCAAAACAATTACAAGAAGTAGCAAAGCAAT-AGt-----aaaaaaagttggaaatattgGAAGAATTATCAGAATGTGGCAAAGAAACATGAAGGAAGCACATACTTTTTGAAAAATGGCACCAACAGACTTGTTCAACACAGGATTACCACAAACCTTCAATCTGTATAAAATGCTGTTATCTGTGAAGCATGAT-AAAATAAAGCACCATAatatgaggtatgcctgtactacattctattcatccattcatcaccagttgatagacatttgggttgtttccacatttggGATATTATGAACAACAC------------------------------------TGTT--A---------------TAAATGcccatgtacaagtttttgtatgaacctgtgttttcacttc------tcttaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21148862 2355 -  24206276 acagagcaatactccgtctccaa-----aaaa--------------------------------------------------------------aagaatcctaacaat----tatcagagacttaagtgagtcataatctcattgctggtggacgggtcttgcctcaatgtgcatggctgctgacttataagggtggtagttgctaagggttgggttaactgtggtaatttcttaaaatcagacaaccatgatgtttgcttcatagttggattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaactttcaaaattggagtcaatcctctcaaactctgcctctgctatatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatgtgcaccaggagtaga-ttatatcaagaaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccaccacctatgtagttacttcctccactgaagtagt--gaacccctcaaagtcatccatgaagtttggaatcagcttcttccaaattcctgttaacgttaatattctgacctcctcccatgaatcacaaatgttcttaagagcatctagaataatgagtcctttccagaaggttttcccagatccatcaaagcaataactatggatggcagccctagccttattaaatgtatttcttcaatagtaaaacttgaaagtaaaaattactccttgatccacaggctgcaaaacttatcttgtgttagcaggcatgaaatcattaatttctttgtacatctccatcagagctcgagtgaacaagt------------------gcattgttaatgagcagtaatattatgaaaggaatccctttttgtctgggcagtaagtctcaacagtgggctttaaacattcagttaaccacagtgtaaacagatgtgctgtcatgactttattgttccatttatagagcacagggagagtagatttagcatgtttcttaagggccctagactcttcagaatggtcagtaagcactggcctcaac-ctgaagtcgccagcttcattagcctg-taacaagataaccagcctgttgttcttcaaagctttgaagccagaaactgacttttcctttctagctaggaaagtcctagatggcatcttcttccaagagaaggctattttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagcttcatcttctgggtaacttgctgcggcttctccatcagcacttgctgcttcatcttgcacatttatgttacggagacagagtcttcctttaaac--------ctcatgaaaaaaaaaa---aaaa-------aaaaaaaaaagaaagaaaagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttctgcagcttcctcacctctctcagccttctcag-----aagagtgctggggcctttcctctggatcaggttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaatctttcccgtatcagcaaaaagtctgtcttgctttcttatcattcatgtgcttactggagtagcccttttagttcactgcaagaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaaaattaatcatttctagtttttgatgtaaactgagagacatgtgactcttcccttcacttgaacacttagaggccactatagggttattaatttgcctactttcaattttgttgtgtctc-------agggaggcccaagaaaagtaggagagagacaggagaacggccaactggtggagcagtcacagcaaacacaacgtttatcaa-ttaagttcaccatcttacacagaaatggtctgtggcacgccaaaacaattacaagtatcatcaaagcaataagt-----aaaaaaagttggaaatattggaagaattatcagaatgtggcaaagaaacatgaagcaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatctgtataaaatgctgttatctgtgaagcgtgat-aaaataaagcaccataatatgaggtatgcctgtactacattctattcatccattcatcaccagttgatagacatttgggttgtttccacatttgggatattatgaacaacac------------------------------------tgtt--a---------------tgaatgcccatgtacaagtttttgtatgaatgtgcgttttcatttc------tcttaa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22290933 2448 + 158406734 acagagctagatctggtctcaaaaaaaaaaaaaagtattttatactatagtctattaaatgtgtatatcgtaattttaaaacactttattgctgaagaatcctaatgat----catcagagacttcagtgagtc--------aacgctggctga-gggtcttgcctcaatgtgcatggctgctgacttataagggtggtggttgctgaaggctgagttagctgtgtcaatttcttaaaataagacaaccatgatgtttgatgcagagttggattcttcctttcatgaaagatgtctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaactttcaaaattggaatcaatcctctcatactctgcctctgctttatcaactaagtttatgt-gaaattctaagtcctttgttgtcttatcaacaaaaatgttcacaccatctgtaccaggagaagatttctatcaagaaaccattcatctgtaagaagctatttatcatctgttcaagtttt---atgagattacagccaattcagtcacatcttcaggctccacttttcattctacttctcttgctatttccaccacttatgtagctacttcttcctctgaagtatt--gaa-ctgtcaaagtcatccatgaagtttggaatcaacttcttccaaactcctgttcatgttaatcttttgaccttcttccattaatcgtaaatgttcttaacagcatctagaaaaatgaatcctttccag-agattttctcagatccatcaaaggaatcactatcgatggcagctctagctttatgaaatgtatttcttaaacagtaagacttgaaagtcaaaattactctttgatccacaggctgctgaactgatcttgtgttagcaggcatgaaatcatttacctccttgtacatc----tcagagcttgagtgacattgttacttgagctctgatggagcattgttaatg---agtactattatgaaaggaatccctttttttctgagcagtaagtctcaacagtgggctttaaacattcagttagccatactgcaaacagatgtgctgtcataactttattgttccatttacagaacacaggtagagtagatttagcatgtttcttaacggccctagaatcttcagaatggtcagtaagcactggcctcaac-ttaaagacaacagcttcattagcctgttaacaagagaatcagcc---tgttcttcaaagctttgaagcaagaaacagacttttcctctttagctaggaaaggcttagatgacatcttct---aaaagaaggctgttttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctggataacttgctgcagcttctccatcagtacttgctgcttcatcttgtacatttacgttatggagacaga---------tggacggacatgacagatggatggaagtatggaaag-------gaggaaggaagggagggaggaaaaagaaaaacctcatgaacaaacctctgctagcttccaaattttcttctgcagcttccttacctctctcagccttcatagaagacaagagtctttgagat-ttcctctggattaggctttggtttaaggaaatgttgtggctgatctgatct-----------------------------tcagcaaaaagcctgtctcgctttcttattattcatgt-------------gcccttttagtttactgcaggaacttgtgctttgcattcacaacttgactacttggaacaagaggcctaactttcagcctaccatggctattgacatgccttcctcactaagcttaatcatttccagtctttgatttaaactgagagacatgtgactcttcccttcacttgaacacttagagaccactttaatgttattaattggcctaatttcaattttgttgtgtctcagggaacagggaggcccaagaaaagtgg--gagagacagaagaatggtcgactggtggagaagtcacagcacacaca---tttaccaa-ttaagttcagcatcttacatgggaatcatttgtggcatgccaaaacaattacaa-cagtggcaaagcaat-agttaaaaaaaaaaagatgaaaatattgggataattactagaatgtagcacagaaacatgaagtaagcacatactttttgaaaaatggcagcaacagatttgtccaacacaggattaccacaaaccttcaatttgtataaaattgtg-tatctgtgagatgtgataaaaataaaacacaataatatgaggtatgccAGtactacattctgttcatccattcatcgctggttaatagacatttgggttgtttccacatttgggatattatgaacaacatacccaagaagggaatttaatatgacagtctattccatatt--aggctgggacctcccccaagttaccacatacaagtttttgtatgaacatgcattttcatttcagtacataccta
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I
e rheMac3.chr7              106726021 3583 - 170124641 I

a score=1129053.000000
s hg38.chr15_KI270850v1_alt    384431 428 +    430880 ggagtgaatttctgggtcacatggtga--------ttaaccttgagtaaccgccaaattgttttccaaaacagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctccactgttcaaagattggaccatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagacaatcagctcaatattatgaaagaaagtaaagta--aaat-----aagcatttaattg-----------tgcttgattatttgaagaaacgttctcttctggtttaccaaatagttcatgaaattaagtttattttt
s panTro4.chr15              80166384 428 +  99548318 ggagtgaatttctgggtcacatggtga--------ttaaccttgagtaaccgccaaattgttttccaaaacagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcattctacc-aggcataaagaggctccactgttcaaagattggaccatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatcctagacaatcagctcaatattatgaaagaaagtaaagaa--aaat-----aagcatttaattg-----------tgcttgattatttgaagaaacgttctcttctggtttaccaaatagttcatgaaattaagtttattttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10177486 428 +  10928107 ggagtgaatttctgggtcacatggtgattc----tttaaccttgagtaactgccaaactgttttccgaaacagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggcataaagaggCTCCactgttcaaagactggacgatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagagaatcagctcaatattatgaaagaaagtaaagaa--aaac-----aagcatttaattg-----------tgcttgattatttgaagaaacgttctcttctggtttaccaaatagttgatgaaattaa----attttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17254443 432 - 121039945 ggagtgaatttctgagtcacctggtgattc----tttaaacttgagtaaccgccaaattgttttccaaaacagttgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctccactgttcaaagattggacgatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagagaatcagctcaatattatgaaagaaagtaaagaa--aaat-----aagcatttaattg-----------tgcttgattatttgaagaaaagttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108461286 436 - 171882078 ggagtgaatttctgggtcacatggtgattccttgtttaaccttgagtaaccgccaaattgttttccaaagcagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctccactgttcaaagattggacaatctaaacaaaaatgggtaactgcaatggatcaagacacaccaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcagctctggagaatgctagagaattagctcaatactatgaaagaaagtaaagaa--aaat-----aggcatttaattg-----------tgcttgattatgtgaagaaacgttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103229016 436 - 162156779 GGAGTGAATTTCTGGGTCACATGGTGATTCCTTGTTTAACCTTGAGTAACCGCCAAATTGTTTCCCAAAGCAGCTGCAACATTTCACATTAGCAATGTATAAGAGTTTCACTTTTTCTACATCCTGATCAACAATTGTTACTGCCCTTTTGCTA--CAGGCATCCTACC-AGGTGTAAAGAGGCTCCACTGTTCAAAGATTGGACAATCTAAACAAAAATGGGTAACTGCAATGGATCAAGACACACCAAACACATTAAATCTATGAGTTCACAATGATACTAAAAAACAACTTACTGGTCAGCTCTGGAGAATGCTAGAGAATTAGCTCAATActatgaaagaaagtaaagaa--aaat-----aggcATTTAATTG-----------TGCTTGATTATGTGAAGAAACGTTCTCTTCTGGTTTACCAAATAGTTGAtgaaattaagtttattttt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21151217 447 -  24206276 ggagtgaatttctgggtcacatggtgattctttgtttaaccttgagtaaccgccaaattgttttccaaagcagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgccttttggcta--caggcatcctacc-aggtgtaaagaggctccactgttcaaagattggacaatctaaacaaaaaagggtaactgcaatggatcaagacacaccaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcagctctggagaatgctagagaattagctcaatactatgaaagaaagtaaagaa--aaat-----aggcatttaattgctttaatttaatgcttgattatgtgaagaaacgttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i chlSab2.chr29             C 0 I 310
s calJac3.chr6               22293381 439 + 158406734 ggagtgaatttctgggtcacatggtgattt--tgtttaaccttgagtaactgccaaattgtcttccaaagcagctgcaacatttctcattagcaatatatgagagtttcactttttctacctcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggCTCCactgttcaaagattacacaatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatccatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagagaatcagctcaatattacgaaggaaagtaaagaa--aaataatcaaagcatttaattg-----------tgcttaattatctgaagaaacgttctcttctggtttatcaaatagttgattaaattaagtttattttt
i calJac3.chr6              C 0 I 2
s mm10.chr7                  81403086 397 + 145441459 gaagtcaattttcaggtcacatggtaactcacacatgaccttttgacaactctgacactgttttccaaagcagatgaaacactctccataaagaatacatgagaatcccacttcttccacatTTTGATGGA--------------TTTTTAAAAATTAGTCATTCTACTGAAATATGAAGAAAATCAACTGTTTAAGGATAGTATCATGTAAACAAAAGCAGGtaattgccatggat----------ccaacacattaaatccatgagaccatgatgatattagaaa--aacttactggttaactttggaga-------------aactcagtattacataacaaaataaacaaataatc-----aatcatttaattttct--------tccctaggtttttttttaatctttttttctaagttaaccaagca----atga----aagcttcttttt
i mm10.chr7                 I 2019 C 0
e canFam3.chr3               54451766 1730 +  91889043 I
e rheMac3.chr7              106726021 3583 - 170124641 I

a score=4474.000000
s hg38.chr15_KI270850v1_alt    384859 8 +    430880 taaaaagc-
s panTro4.chr15              80166812 8 +  99548318 taaaaagc-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10177914 8 +  10928107 taaaaagc-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17254875 8 - 121039945 taaaaagc-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108461722 8 - 171882078 aaacaagc-
i macFas5.chr7              C 0 I 303
s papAnu2.chr7              103229452 8 - 162156779 aaacaagc-
i papAnu2.chr7              C 0 I 303
s calJac3.chr6               22293822 7 + 158406734 taaaaga--
i calJac3.chr6              I 2 C 0
s mm10.chr7                  81403483 8 + 145441459 -acaaaatt
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54451766 1730 +  91889043 I
e chlSab2.chr29              21151664 310 -  24206276 I
e rheMac3.chr7              106726021 3583 - 170124641 I

a score=398.000000
s hg38.chr15_KI270850v1_alt    384867 1 +    430880 a
s panTro4.chr15              80166820 1 +  99548318 a
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10177922 1 +  10928107 g
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17254883 1 - 121039945 g
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22293829 1 + 158406734 a
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81403491 1 + 145441459 a
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54451766 1730 +  91889043 I
e chlSab2.chr29              21151664 310 -  24206276 I
e papAnu2.chr7              103229460 303 - 162156779 I
e macFas5.chr7              108461730 303 - 171882078 I
e rheMac3.chr7              106726021 3583 - 170124641 I

a score=224303.000000
s hg38.chr15_KI270850v1_alt    384868 74 +    430880 tatcaactaataaacgaaaaac--agagaattagaaaactgctatttggcaacctctaatgta----tcta---------------------------ggtagtgac
s panTro4.chr15              80166821 74 +  99548318 tatcaactaataaacgaaaaac--agagaattagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggtagtgac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10177923 74 +  10928107 tatcaactaataaatgaaaaac--agagaactagaaaaccgctatttggcaacccctaatgta----tcta---------------------------ggtagtgac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17254884 74 - 121039945 tatcaactaataaatgaagaac--aaagaatttgaaaactgctatttggcaacccctaatgta----tcta---------------------------ggtagtgac
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106729604 74 - 170124641 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i rheMac3.chr7              I 3583 C 0
s macFas5.chr7              108462033 74 - 171882078 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i macFas5.chr7              I 303 C 0
s papAnu2.chr7              103229763 74 - 162156779 tatctactaataaatgaaaaac--agagatTTAGAAAACTGCTATTTGGCAACCCCTAATGTA----TCTA---------------------------GGAAGGGAC
i papAnu2.chr7              I 303 C 0
s chlSab2.chr29              21151974 74 -  24206276 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i chlSab2.chr29             I 310 C 0
s calJac3.chr6               22293830 80 + 158406734 tatcaactaataaatgaaaaactgagagaattaggaaactgcaatttggcaacccctaacgtaagtgtcta---------------------------ggtactgac
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81403492 96 + 145441459 catcagttaataaatgaagtat---gagagatacaaAATTGATGT----CAATCTCTAATATA----TTAATGCTGGCAAAGGTGCTAAAATATgggtggtagtggc
i mm10.chr7                 C 0 I 154
e canFam3.chr3               54451766 1730 +  91889043 I

a score=165847.000000
s hg38.chr15_KI270850v1_alt    384942 65 +    430880 catcaatgcctgatgatatcactagaaaagaagtactcagtatcacctactaagtattcttgcta
s panTro4.chr15              80166895 65 +  99548318 catcaatgcctgatgatatcactagaaaagaagtactcagtatcacctactaagtattcttgcta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10177997 64 +  10928107 catcaatgcctgatgatattactag-aaagaagtactcagtatcacctactaagtattcttgcta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17254958 64 - 121039945 cgtcaatgcctgatgatatcactag-aaacaagtactcagcatcacctactaagtattcttgcta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106729678 64 - 170124641 catcaatgtctgatgatattactag-acagaagtactcaggatcacctactaagtattcttgcca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108462107 64 - 171882078 catcaatgtctgatgatattactag-acagaagtactcaggatcacctactaagtattcttgcca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103229837 64 - 162156779 CATCAATGTCTGATGATATCACTAG-ACAGAAGTACTCAGGATCACCTACTAAGTATTCTTGCCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21152048 63 -  24206276 caccaatgtctgatgatatcactag-aaagaagtattcaggatcacc-aataagtattcttgcca
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22293910 56 + 158406734 caccta--------gatttcactag-acagaagttctcaatatcacctgctaagtattcttgcta
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81403588 154 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I

a score=1266272.000000
s hg38.chr15_KI270850v1_alt    385007 413 +    430880 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactagagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctcaaaaaat---ttatagcagagggcagatgaagaaagcaatcctagcctaaaagcaacttgagacat----aatcacaatcCTAACAATCAC-AGAATCACAATGCTATTCCT-AAAGGATTC-AAAACACAATTAGGTCTAATTTTTACTAAAGCTCACGAAAAATAAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGAACTGATTTATTCTCTTGATGGCATAATATTCTGACCGAATTCACTTGCAAATAAA-CTTCTGACATG
s panTro4.chr15              80166960 413 +  99548318 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctcaaaaaat---ttatagcagagggcagatgaagaaagcaatcctagcctaaaagcaacttgagacat----aatcacaatcCTAACAATCAC-AGAATCACAATGCTATTCCT-AAAGGATTC-AAAACACAATTAGGTCTAATTTTTACTAAAGCTCACGAAAAATAAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGGACTGATTTATTCTCTTGATGGCATAATATTCTGACCGAATTCATTTGCAAATAAA-CTTCTGACATG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10178061 409 +  10928107 agaaagtcaaacct--gtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctcaaaaaat---ttatagcaggcggcagatgaagaaagcaaccctagactaaaagcaacttgagacat----aATCACAATCCTAACAATCAC-AGAATCACAATCCTATTACTAAAAGGATTC-AAAAAACAATTAGGTCTAGTTTTTACTAAAGTTCACAAAA---AAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGGACTGATTTACTCTCTTGATGACATAATATTCTGACCGAATTCACTTGCAAATAAA-CTTCTGACATG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17255022 413 - 121039945 aggaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctaaaaaaat---ttatagcagggggcagatgaagaaagcaaccctagactaaaagcaacttgagacat----aatcacaatcCTAACAATCAC-AGAATCACAATCCTATTCCT-GAAGGATTC-AAAAAACAATTAGGTCTAATTTTTACTAAAGCTCACGAAAAATAAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGGACTGATTTATTCTCTTGATGGCATAATATTCTGACCGAATTCACTTGCAAATAAA-CTTCTGACATG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106729742 412 - 170124641 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacgggaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-ggaggcagatggagaaagcaactctatactaaaagcaacctgagacat----aatcacaatcCTAACAATCAC-AGAATCACAATCCTATTCCT-GAAGGATTC-AAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAATATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGACTGGTTTATACTCTTGATGGCATAATAGTCTGACTGAATTCACTTGCAAATAAA-CTTTTGACGCG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108462171 412 - 171882078 agaaagtcaaatctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacgggaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-ggaggcagatggagaaagcaactctagactaaaagcaacttgagacat----aatcacaatcCTAACAATCAC-AGAATCACAATCCTATTCCT-GAAGGATTC-AAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAATATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGACTGGTTTATACTCTTGATGGCATAATAGTCTGACTGAATTCACTTGCAAATAAA-CTTTTGACGCG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103229901 411 - 162156779 AGAAAGTCAAACCTAAGTCTGCTCAAGTCTCTAGCTATAATC----ACC-ATTAACAGAAACTACAGGGGGCCAAGGGACATGTGAAGTACTGCCACGGGTATGCAGTCAGTAAAATCTGTACTGCAGATAATTTCATAGAAC-ACATGACCtacttttctcaaaaaat---ttaCAGC-GGGGGCATGTGGAGAAAGCAACTCTAGACTAAAAGCAACTTGAGACAT----AATCACAATCCTAACAATCAC-AGAATCACAATCCTATTCCT-GAAGGATTC-AAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAATATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGACTGGTTTATACTCTTGATGGCATAATAGTCTGACTGAATTCACTTGCAAATAAA-CTTTTGACGCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21152111 413 -  24206276 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacgggaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-gggggcagagggagaaagcaactctagactaaaagcaacttgagacat----aatcacaatcCTAACAATCAC-AGAATCACAATCCTATTCCT-GAAGGATTCAAAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAAAATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGACTGGTTTATACTCTTGATGGCATAATAGTCTGACCGAATTCACTTGCAAATAAA-CTTTTGACGCG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22293966 428 + 158406734 agaaagtcaaacctaagtctgctcaagtctctagctataatcatcaaccaattaatagaaaatacagggggtcgagggatatgttaagtactgccatgagaatgcagtcagtaaaatctatattgcagataattccagagaac-acatgacctacttttctcaaaaaataaattacagcaggaagcagatggagaaagcaactccagactaaaagcaatgtgagacataaacaatcacaatgCTAACAATCAC-AGAATCACAATCCTATTCCT-GAAAGATTC-AAAAAACAGTTAGGCCTAATTTTCACTAAAGCTCACAAAAAACACAGCAGTTAATACAAGCAAGTGTGTGGTGAAACTTGGAGTGATTAATGCTCTTGATGGCATAACCATCTGACCAAATTCACTTGCAAATAAA-CTTTTTACACG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81403742 347 + 145441459 ACAAAACCAAACCAAAGTCT--------------CTATTTTA----ATCAGTTAATTAAAAATATTGGGGGGCA---------TTAAGTATTGA--------------TAGTTAGAAGTATACAACAGATAATTTTACAAAATAATATGGA--------TTTAACAAAT-----AAAGATAAAAAGAAATAGAGGAAACAAATGGAGACTAAAAGCAACTAGAAATTT--------------CTAACAATCTTGAGTATGTTTAT-CTACCATA-TAAGAATTC-AAAACA-AGTGGGGGCTTATC----------CCCACAAGAAAT---TCAGTCAATACTAGCAAGAATGTAACAAAACTTAGGTTCATTTATACTTCCAACACCACAATATTCTAATTCAATTCATCT-CAATTAAACCTTCTGAGGTG
i mm10.chr7                 I 154 I 30523
e canFam3.chr3               54451766 1730 +  91889043 I

a score=2325425.000000
s hg38.chr15_KI270850v1_alt    385420 799 +    430880 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTTTCCATCTGAG---AAAAAAAAGCCCAATTTGGAAAACATATGTACTAAAAAGTTCATTAAAATGTTCATTACAggacaggcgctgcagctcacacatgtaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggagttgaaact-----ccaacatggcaaaaccccgtctctact-aaaatac-aaaaaattagctgggcatggtggctcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaaccccggaggcagaggttacagtgagcagagattatgccactgcactccaacctgggcaacagagggagactctgtctcaaaaaaaaaaaaaaaaaaaaaGTTCATTACAGTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATACATCCTCTTGACATATTTAAGTCATTAATATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGACAGGCTTAAGATACCAGGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAATGCTGAAATGCCAATTTTAAAGAATCTGTAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAAGAAATAT-Aggctgggcacgttggctcacgcctgtaatcccagtgcttttggaggctgaggcaggtgggatcgcttgagccc
s panTro4.chr15              80167373 797 +  99548318 AGAAGATTTAACCTGCAAATGCAAGTATTAATAAGCTTTCCATCTGAG---AAAAAAAAGCCCAATTTGGAAAACATATGTACTAAAAAGTTCATTAAAATGTTCATTACAggacaggcgctgcagctcatacatgtaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggagttgaaact-----ccaacatggcaaaaccccgtctctact-aaaatac-aaaaaattagctgggcatggtggcgcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaaccccggaggcagaggttacagtgagcagagattatgccactgcactccaacctgggcaacagagggagactctgtctc--aaaaaaaaaaaaaaaaaaaGTTCATTACACTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAGAAGAGGATATGAACTGCTAAGTACTTTTGATACATCCTCTTGACATATTTAAGTCATTAATATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGACAGGCTTAAGATACCAGGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAATGCTAAAATGCCAATTTTGAAGAATCTGTAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAAGAAATAT-Aggctgggcacgttggctcacgcctgtaatcccagtgcttttggaggctgaggcaggtgggatcgcttgagccc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10178470 799 +  10928107 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTTTTCATCTGAG---AAAAAAAAGCCAAATTTGGAAAACATATGTACTAAAAAGTTCATTAAAATGTTCATTACAggccaggcactgcagctcatacatgcaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggagtttcaactcctggccaacatggcaaaaccccctctctactaaaaatac-aaaaaattagctgggcatggtggtgcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccaagattgtgccactgcactccaacctgggcaacagagggagactttgtctc-----aaaaaaaaaaaaaaaaGTTCATTACAGTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAAAAGAGGATATGAACTGTTAAGTAGTTTTGATACATCGTCTTGACATATTTAAGTCATTAATATGGAAGACAATCTAGCAACAAGCAAACACACTCATGACAGGCTTAAGATACCAAGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAGTGCTAAAATGCCAATTTCAAAGAATCTGCAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAAGAAATAT-AGTctgggcgcattggctcatgcctgtaatcccagtgctttgggaggctgaggcaggt-ggatcgcttgggtcc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17255435 799 - 121039945 AGAAGATTTAACTTGCAAATCCAAGTATTAATAAGCTTTTCATCTGAG---AAAAAAAAGCCAAATTTGGAAAACATATGTACTAAAAAGTTCATTAAAATGTTCATTACAggccaggcgctgcagctcatacatgtaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggagtttcaactcctggccaacatgacaaaaccccgtctctactaaaaatacaaaaaaattagctgggcatggtggtgcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaacccaggaggcagagtttacagtgagctgagattgtgccactgcactccaacctgggcaacagagggagactctgtctc------aaaaaaaaaaaaaaTGTTCATTACAGTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATACATCCTCTTGACATATTTAAGTCATTAATATGGAAGACAATCTAGCAACAAGCAAACATACTCATGACAGGCTTAAGATACCAGGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAATGCTAAAATGTCAATTTTAAAGAATCTGTAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAAGAAATAC-Aggctgggcgcgttggctcacgcccgtaatcccagtgctttgggaggctgaggcaggt-ggatcgcttgagacc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106730154 796 - 170124641 AGAAGATTTAATTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAG---AAAAAAAAGCCAAATTTGGAAAAGATATGTACTAAAAAATTCATGAAAATGTTCATTACAggccaggtgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggagtttcaactcctggccaacatggcaaaaccccgtctccactaaaaacac-aaaaaattagctgggcatagtggtgcacacctgtaatcctagctactcgggaagctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccgagattgtgccactgcactccaacctgggcaacggagggagactctgtctc------aaaaaaaaaaaaaaaaTTCATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCTCTTGACATATTTAAGTCATTAACATGGAAGACAATCTAGCAACAAGCAAAAATACTCATA--AGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAATCTGTAGCCATATTAGAAAACAAAAAAGGATATCCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAAGAAATAT-Aggctggacgcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-ggatcacttgagccc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108462583 798 - 171882078 AGAAGATTTAATTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAG---AAAAAAAAGCCAAATTTGGAAAAGATATGTACTAAAAAATTCATGAAAATGTTCATTACAggccaggtgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggagtttcaactcctggccaacatggcaaaaccccgtctctactaaaaacac-aaaaaattagctgggcatagtggtgcacacctgtaatcctagctactcgggaagctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccgagattgtgccactgcactccaacctgggcaacggagggagactctgtctc----aaaaaaaaaaaaaaaaaaTTCATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCTCTTGACATATTTAAGTCATTAACATGGAAGACAATCTAGCAACAAGCAAAAATACTCATA--AGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAATCTGTAGCCATATTAGAAAACAAAAAAGGATATCCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAAGAAATAT-Aggctggacgcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-ggatcacttgagccc
i macFas5.chr7              C 0 I 89
s papAnu2.chr7              103230312 788 - 162156779 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTtttaatctgag--aaaaaaaaagccaaatttgGAAAAGATATGTActaaaaaattcatgaaaatgttCATTACAGGCCACGTGCtacagctcatacctgtaatcccagcactttgggagac--aggtgggcagatcacttgaggccaggagtttcaactcctggccaacatggcaaaaccctgtctctactaaaaacat-aaaaaattagctgggcatagtggtgcacacctgtaatcctagctactcaggaagctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccaagattatgccactgcactccaacctgggcaacggagggagactctgtctc-aaaaaaaaaaaaaaaaaaaaattcattacagTATTATTTTTAGCAAGAAGATACCCAAGAA------------GTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCTCTTGACATATTTAAGTCATTAACATGCAAGACAATCTAGCAACAAGCAAAAATACTCATA--AGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGctaaaatgtcaattttaaagAATCTGTAGccatattagaaaacaaaaaaggatatcCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAAGAAACAT-AGGCTGGACGcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-ggatcacttgagccc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21152524 796 -  24206276 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAGAAAAAAAAAAAGCCAAATTTGGAAAACATATGTACTAAAAA------GAAAATGTTCATTACAggccaggtgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggagtttcaactcctggccaacatggcaaaaccccgtctctactaaaaatac-caaaaattagctgggcatagtggtgcacacctgtaatcctagctactcgggaagctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccgagattgtgccactgcactccaacctgggcaacggagggagactctgtctc-----aaaaaaaaaaaaaaaaaTTCATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCTCTTGACATATTTAAGTCATTAACATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGACAGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAATCTGTAACCATATTAGAAAACAAAAAAGGATATCCTCAGTGTGCCAAAATCAGGAAGAATCCTAAAAACAAGAAATAT-Aggctagacgcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-ggatcacttgagccc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22294394 777 + 158406734 AGAGGATTTAACTTGCAAATAAAAGTAT---TAAGCTTTTAATCTGAG----AAAAAAAGCAAAATATGGAAAACATATGTATTAAAAAGTTCATTTAAATATTCATTACAggccaggctctgcatctcatatttgtaatcctagcactttgggagaccgaggcaggcagattgcttgaggccaggacttggaacgcctggtcaacatgacgaaaccccatctctactaagaatac-aaaaaa-tagctgggcacggtggcacactcc--------------accatgaagccaaggcatgaaaatcacttgaaccaaggaggcagaggttacagtgagccgagattgtgccactgcaccccgacctgggcgacagagggagacactgtctc--------aaaaaaaaaaaaTGTTCATTACAGTATTATTTATAGCAAGAAGATACCCAGGAAGCATGTGGTTTTATTTACATGGCAAGGAGAGGATAAGAACTGTTAGGTAGTTTTGATATATCCTCTTGACATATTTAAGTCATGAACATGGAAGACAATCTACCAACAAACAAAAATACTCATGTCAGGCTTAAGATACCAGGATAAACACATATTATAGCTTCCCCTTCATTCTCCAATGCTAAAATGACAATTTTAAAGAACCTGTAGCCATATTAGAAAACAAAAAAAGATACCCTTGGTGTGCCAAAATCATCAAGAATCCTGAAAACAAGAAATATAAggctgaacacagtggctcacacctgtaatcccagcgc-ttgggaggctgagggaagt-ggattgcttgagccc
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I

a score=2548.000000
s hg38.chr15_KI270850v1_alt    386219 1 +    430880 a
s panTro4.chr15              80168170 1 +  99548318 a
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10179269 1 +  10928107 a
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17256234 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106730950 1 - 170124641 a
i rheMac3.chr7              C 0 I 9456
s papAnu2.chr7              103231100 1 - 162156779 a
i papAnu2.chr7              C 0 I 8
s chlSab2.chr29              21153320 1 -  24206276 a
i chlSab2.chr29             C 0 I 9866
s calJac3.chr6               22295171 1 + 158406734 a
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I
e macFas5.chr7              108463381 89 - 171882078 I

a score=32997.000000
s hg38.chr15_KI270850v1_alt    386220 45 +    430880 ggagttcaagctcagactgggcaacac---------------------------agggagacc--ctatctcta
s panTro4.chr15              80168171 45 +  99548318 ggagttcaagctcagactgggcaacac---------------------------agggagacc--ctatctcta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10179270 45 +  10928107 ggagttcaagatcagactgggcaacac---------------------------agggagacc--ctatctcta
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17256235 45 - 121039945 ggagttcaagatctgactgggcaacac---------------------------agggagaac--ctatctcta
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              103231109 71 - 162156779 ataatttaaa---agacTTCACAACTCATAAAATGCACTTAAATCCATgctcagagggaaatttacagtCTCTG
i papAnu2.chr7              I 8 I 9
s calJac3.chr6               22295172 45 + 158406734 gaagttcaagatcagactgggcaacag---------------------------agggagacc--tcgactcta
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e macFas5.chr7              108463381 89 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=140135.000000
s hg38.chr15_KI270850v1_alt    386265 119 +    430880 --------------------------------caaaaaaatgaaaaa------gttaagagggtgtagtggcacatgcttgtagtcccagctacttgggacactaaagtgggaggatcaattgggcctggaaggtcgaggctgcaatgagcagtgat
s panTro4.chr15              80168216 119 +  99548318 --------------------------------caaaaaaatgaaaaa------gttaagagggtgtagtggcacatgcttgtagtcccagctacttgggacactaaagtgggaggatcaattgggcctggaaggtcgaggctgcaatgagcagttat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10179315 119 +  10928107 --------------------------------caaaaaaatgaaaaa------gttaagagggtgtagtggcacatgcttgtagtcccagctacttgggacgctaaagtgggaggatcaattaggcctgggaggtcgaggctgcaatgagcagtgat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17256280 119 - 121039945 --------------------------------caaaaaaatgaaaaa------gttaagacggtgtagtggcacatgcttgtagtcccagctacttgggatgctaaagtgggaggatcaattgggcctgggaggtcgaggctgcaatgagcagtgat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108463470 121 - 171882078 --------------------------------taaaaagattaaaaaccatgggccaaga----atggtgactcatgcctgttatacaagtgctttgggaggttcagatgggaggactgcttcagcctaggagtttgaggttaccgtgaactatgat
i macFas5.chr7              I 89 I 9271
s papAnu2.chr7              103231189 121 - 162156779 --------------------------------taaaaagattaaaaaccatGGGCCAAga----atggtgactcatgcctattatacaagtgctttgggaggttcagatcggaggactgcttcagcctaggagtttgaggttacagtgaactatgat
i papAnu2.chr7              I 9 I 8857
s calJac3.chr6               22295217 151 + 158406734 caaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaatgaaaaa------attaatggggtatagtggcacatgcttgtagtcccagctacttgggaagctgaggttggagaatcaactgggcctgggaggtcgaggctgcagtgagcagtgat
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=1000.000000
s hg38.chr15_KI270850v1_alt    386384 1 +    430880 c
s panTro4.chr15              80168335 1 +  99548318 c
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10179434 1 +  10928107 c
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17256399 1 - 121039945 c
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295368 1 + 158406734 c
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=261539.000000
s hg38.chr15_KI270850v1_alt    386385 494 +    430880 AAAATGTAGCAGGATTTCTTAaggaatcagagagactgatggggtttaggagtatatttattaattaggtgcaccggcccagttggatttacatccaaaggactgagccctgaacaaagagttaagttaccttttaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagcgagaaacaaagacagttatttaattaattgagacatgcattaaatcatttcttactttccaaggaaaaacatgttttacagcttgagtttatctgtctagtgaactttcagctgcacagatagagaaacagggtcttcacaatgcttgggaaaggaggagagacaaggctcactagccacagaaaaacaggcagttaatttttaaagaactccagctctttctctttttcagggggaattgggttttcttacatacaactgagtttctgctta-acattttttaatttcttttaattcctgttcca
s panTro4.chr15              80168336 494 +  99548318 AAAATGTAGCAGGATTTCttaaggaatcagagagactgatggggtttaggagtatatttattaattaggtgcaccggcccagttggatttacatccaaaggactgagccctgaacgaagagttaagttaccttttaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacagttatttaattaattgagacatgcattaaatcatttcttactttccaaggaaaaacatgttttacagcttgagtttatctgtctagtgaactttcagctgcacagatagagaaacagggtcttcacagtgcttgggaaaggaggagagacaaggctcactagccacagaaaaacaggcagttaatttttaaagaactccagctctttctctttttcagggggaattgggttttcttacatacaactgagtttctgctta-acatttttaaatttcttttaattcctgttcca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10179435 492 +  10928107 AGAATGTAGCAGGATTTCTTAaggaatcagagagactgatggggttcaagaggatatttattaattaggtgcaccggcccagttggattaacatccaaaggactgagccctgaacaaagagctaagttaccttctaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagcgagaaacaaagacagttatttaattaattgagacatgcattaaatcatttcttactttccaaggaaaaacatgttttacggcttgagtttatctgtctagtgaactttcagctgcacagctagagaaacagggtctccacaatgcctgggaaaggaggagagataaggctcactagccacagaaaaacaggcagttaatttttaaagaactccagcgctttctctttttcagggggaattgggttttcttacatacaactgagtttct--tac-acattttttaatttcttttaattactgttcca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17256400 495 - 121039945 AAAATGTAGCAGGATTTCttaaggaatcagagagactgatggggtttaggaggatatttattaattaggtgcaccggcccagttggattaacatccaaaggactgagccctaaacaaagagttaagttacgttttaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacggttatttaattaattgagacatgcattaaatgatttcttactttccaaggaaaaacatgttttacggcttgagtttatctgtctagtgaactttcagctgcaaagctagagaaacagggtcttcacaatgcttgggaaaggaggagagataaggttcactagccacagaaaaacaggcagttaatttttaaagaactccagctctttctgtttttcagggggaattgtgttttcttacatacaactgagtttctgcttacacatttttaaatttcttttaattcctgttcca
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22295369   0 + 158406734 C
e canFam3.chr3               54451766 1730 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=271963.000000
s hg38.chr15_KI270850v1_alt    386879 328 +    430880 Acaccactcgactccagcctgcatgacaagaatgagaccctgtctcaaaaaacaaa---------------aaCCAGCAAGACAGATGGATTCAAAGTGGAAGGAGGAGATGTTGAAAGAAGAC--TTAACAAAATAGGAGAGCTGCTCCAGATATTACAAAGCTTGAGAGGTGTATAAAAGGAGTTACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTGAACCAGGAACCTGATGACATCCAGGTGGCATGATGAGACTACATATCCAGAAGTTTAGCTACTATTACATCTCTCCCTT
s panTro4.chr15              80168830 328 +  99548318 Acaccactcgactccagcctgcatgacaagaatgagaccctgtctcaaaaaacaaa---------------aaCCAGCAAGACAGATGGATTCAAAGTGGAAGGAGGAGATGTTGAAAGAAGAC--TTAACAAAACAGGAGAGCTGCTCCAGATATTACAAAGCTTGAGAGGTGTATAAAAGGAGTTACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTCAACCAGGAACCTGATGACATCCAGGTGGCATGATGAGACTACATATCCAGAAGTTTAGCTACTATTACATCTCTCCCTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10179927 327 +  10928107 Acaccactcgactccagcctgcatgacaagaatgagaccctgtctcaaaaaacaaa---------------aaCCACCAAGACAGATAGATTCAAACTGGAGGGAGGAAATGTTGAAAGAAGAC--TT-ACAAAATAGGAGAGCTGCTCCAGATATTACACAGTTTGAGAGGTGTATAAAAGGAGATACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTGAACCAGGAACCTGATGATATCCAGGTGGCATGATGAGATTACATATTCAGAAGTTTTGCTACTATTACATCTCTCCCTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17256895 327 - 121039945 Acaccactcgactccagcctgcatgacaagaatgagaccctgcctcaaaaaacaaa---------------aaCTAGCAAGACAGATGGATTCAAACTGGAAGGAGGAAATGTTGAAAGAAGAC--TT-ACAAAATAGGAGAGCTGCTCCAGATATTACACAGCTAGAGAGGTGTATAAAAGGAGTTACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTGAACCAGGAACCTGATGATATCCAGGTGGCATGATGAGACTACATATCCAGAAGTTTTGCTACTATTACATCTCTCCCTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295369 344 + 158406734 ataccattcgactccagcctacatgataagaatgagactctgtttcaaaaaaacaataaccaagaaaaTACAACAAGCAAGACAGATGGATTCAAACTGGAAGGAGGGAACATTGAAAGAAGACTGTT-AGAAAACAGGAGAGTTGCTCCAGATATTGCACAGCTTGAAAGGTGTATAAAAGGAGTTACTTATACGACTATTGACAATGACTGCATTGGAGAAGCCCAGTAGAAGCATACAGGCTGATTCTACTACTTCACCTATGAACCAGGAACCTGATGATATCCAGGAGGGATGATGAGACTACATATCCGGAAGTTTTGCTACTATTACATCTCTCTCTT
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54451766 1730 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=63753.000000
s hg38.chr15_KI270850v1_alt    387207 61 +    430880 GTAATTTCCCATCCTGAGAGCAGGCTAGCATAAACCTACACAGCATTTGCACACAAGATTT
s panTro4.chr15              80169158 61 +  99548318 GTAATTTCCCACCCTGAGAGCAGGCTAGCATAAACCTACACAGCATGTGCACACAAGATTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10180254 61 +  10928107 GTAACTTCCCATCCTGAGAGCAGGCTAGGATAAACCTACACAGCATTTGCACACAAGGTTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17257222 61 - 121039945 GTAACTTCCCATCCTGAGAGCAGGCTAGAATAAACCTACACAGCATTTGCACACAAGGTTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295713 60 + 158406734 -TAACTTCCCATCCTGAGAGCAGGCTAGAATAAACCTACACATCATTTGCACACAAAGTTT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54453496 61 +  91889043 GTGCTCTCTCATCCTGAGGACAGGCTGGAGTAAATGGAGATGGTATCTGCGCACTGGCTTT
i canFam3.chr3              I 1730 I 17
e mm10.chr7                  81404089 30523 + 145441459 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=120919.000000
s hg38.chr15_KI270850v1_alt    387268 168 +    430880 CTCAGGCATTTCAAAAACAAATGTCATTTAggctaggtgcggt--ggctcacgcctgtaatcctagtactttgggaggctgaggtgggtggatcacctgaggtgggtggatcacctgaggtcaggaattcaaaactagcctggccaacatggtgaaacctcatctctact
s panTro4.chr15              80169219 150 +  99548318 CTCAGGCATTTCAAAAACAAATGTCATTTAggctaggtgcggt--ggctcatgcctgtaatcctagtactttgggagg------------------ctgaggtgggtggatcacctgaggtcaggaattcaaaactagcctggccaacatggtgaaacctcatctctact
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10180315 150 +  10928107 CTCAGGCATTTCAAAAACAAATGTCATTTAggctaggcgcggt--ggctcacgcctgtaatcctagcactttgggagg------------------ctgaggtgggtggatcacctgaggtcaggaattcaaaactagcctggccaacgtggtgaaacctcatctctact
i ponAbe2.chr15_random      C 0 I 309
s nomLeu3.chr6               17257283 149 - 121039945 CTCAGGCA-TTCAAAAACAAATGTCATTTAggctaggcgtggt--ggctcatgcctgtaatcctagcactttgggagg------------------ctgaggtgggtggatcacctgaggtcgggaattcaaaactagcctggccaacgtggtgaaacctcatctctact
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295773 151 + 158406734 CTCAGGCATTTCAAAAACAAATGTCATTTAggctaggagtggcaggactcacgcctgtaattccagcactttcggagg------------------ctgaagtgggtggatcaactgaggtcaggaattcgagactagcctggccaacat-gtcaactctcatctctact
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54453557  17 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=122413.000000
s hg38.chr15_KI270850v1_alt    387436 169 +    430880 aaaaatacaaaaattacccgggcatggtggcgcacacctgtaatcccagctactagggaggctgaagcaggagaatcgcttgaacgtgggacgcagaggttgcagtgagctgagattgcac-----cactccagcctgagtgacagagcaaaactctgtc-tcaa----aaaaacaaaa
s panTro4.chr15              80169369 169 +  99548318 aaaaatacaaaaattacccgggcatggtggtgcacacctgtaatcccagctactagggaggctgaagcaggagaatcgcttgaacgtgggaggcggaggttgcagtgagctgagattacac-----cactccagcctgagtgacagagcaaaactctgtc-tcaa----aaaaaaaaaa
i panTro4.chr15             C 0 I 1
s ponAbe2.chr15_random       10180774 169 +  10928107 aaaaatacaaaaattacccaggcgtggtggtgtgcacctgtaatcccagctactagggaggctgaagcaggagaattgcttgaacgtgggaggcagaggttgcagtgagctgagatcacac-----cactccagcctgagtgatagagcaaaactctgtc-tcaa----aaaaacaaaa
i ponAbe2.chr15_random      I 309 C 0
s nomLeu3.chr6               17257432 178 - 121039945 aaaaatacaaaaattacccgggcatggtggcatgcacctgtaatcccagctactagagaggctgaagcaggagaattgcttgaacctaggaggcagaggttgcagtgagccaagatcacgccactgcacttcagcctgggggacagagtgagactccacc-tcaaaaacaaaaacaaaa
i nomLeu3.chr6              C 0 I 7
s calJac3.chr6               22295924 175 + 158406734 gaaactataaaaatcagccaagcacggtggtatacacctgtaatcccagatactagggaggctgaggtagaagaactgcttgaacctgggaggtgaaggttgcagtgagctgagatcataccaatgctctccagtctgggcaacagagaaaaactccttagtcaa----aaaaacaaaa
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54453557  17 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=139861.000000
s hg38.chr15_KI270850v1_alt    387605 299 +    430880 CAggctgggcgcagtggttcacgcctataatctcagtattttggg-aggcggaggtgggtggatcgcctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaacacaaaaattagctgggcgtggtggtgggtgcccgtaatcccaactacttgggaggctgaggcaggagaatcttttgaacccaggaggtggaggttacagtgacccaagatcatgccactgcactccagtctgggtgacagagcgagactccatctgaaaaacaaaaacaaa-
s panTro4.chr15              80169539 299 +  99548318 CAggctgggcgcggtggttcacgcctataatcccagtattttggg-aggcggaggtgggtggatcgcctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgggtgcctgtaatcccaactacttgggaggctgaggcaggagaatcttttgaacccaggaggtggaggttacagtgacccaagatcatgccactgcactccagtctgggtgacagagcgagactccatctgaaaaacaaaaacaaa-
i panTro4.chr15             I 1 C 0
s ponAbe2.chr15_random       10180943 299 +  10928107 CAggctgggcgcagtggctcacgcctataattccagtattttggg-aggcggaggtgggtggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctgctaaaaatacaaaaattagctgggcgtggtggcgggagcctgtaatcccaactacttgggaggctgaggcaggagaatctcttgaacccaggaggtggaggttgcagtgacctaagatgatgccactgtactccagtctgggtgacagagcaagactccatctcaaaaacaaaaacaaa-
i ponAbe2.chr15_random      C 0 C 0
s calJac3.chr6               22296099 295 + 158406734 CAggctgggcacagtggctcacgcctataatcccagcactttgggaaagccgaggcaattggatcgtctgaggtcaggagtttgagaccagcctgaccatcatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatcccaactacttgagaggctgaggtaggagaatcgcttgaact------gcacaggttgcagtgagccgagatcacaccactgcactccaacctgggcgacagagtgagactctgtctcaacaaaaaactaaaac
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54453557  17 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e nomLeu3.chr6               17257610   7 - 121039945 I

a score=5026.000000
s hg38.chr15_KI270850v1_alt    387904 10 +    430880 c-aaaaaaaCC
s panTro4.chr15              80169838 11 +  99548318 caaaaaaaaCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10181242 10 +  10928107 c-aaaaaaaCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17257617 10 - 121039945 c-aaaaaAACC
i nomLeu3.chr6              I 7 C 0
s calJac3.chr6               22296394  8 + 158406734 ---aaaaaCCC
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54453557 17 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=426566.000000
s hg38.chr15_KI270850v1_alt    387914 456 +    430880 AAAGGCCATTTAAAAATACAAATTACAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTTAACATAAAACCTATACCTTTcccataaatatatacacctactgtgtacccataaaaattaaaaGTAAAAAAATTTTAACTCTTATATCTGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAATAATAATTCCCCCAAAGATACCAGACGATCCATTGGAGACCTTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATGGTCTGATTGGTAGAATGTTCACAAATGAAAAACTTAATAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCAGGAGAATAAAAACGTTGAAAAATACAAGAAGATTGGAAACACTCCTCACTACTACTCAActggacacgttcctag
s panTro4.chr15              80169849 456 +  99548318 AAAGGCCATTTAAAAATACAAATTATAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTTAACATAAAACCTATACCTTTcccataaatatatacacctactgtgtacccataaaaattaaaaGTAAAAAAATTTTAACTCTTATATCTGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAATAATAATTCCCCCAAAGATACCAGACGATCCATTGGAGACCTTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATGGTCTGATTGGTAGAATGTTCACAAATGAAAAACTTAATAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCAGGACAATAAAAACGTTGAAAAATACAAGAAGATTGGAAACACTCCTCACTACTACTTAACTGGACACGTTCCTAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10181252 456 +  10928107 AAAGGCCATTTAAAAATACAAATTACAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTTAACATAAAACCTATACCTTTcccataaatatatacacctactgtgtacccataaaaattaaaaGTAAAAAAATTTTAACTCTTATATCTGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAATAATAATTCCCCCAAAGATACCAGACGATCCGTTGGAGACCCTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATGGTCTGATTGGTAGAATGTTCACCAATGAAAAACTTCATAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCAGGAGAATAAAAATGTTGAAAAATACAAGAAGACTGGAAACACTCCTCACTACTACTCAActggacacgttcctag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17257627 456 - 121039945 AAAGGCCATTTAAAAATACAAATTACAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTTAACATAAAACCTATACCTTTcccataaatatatacacctactctgtacccataaaaattaaaaGTAAAAAAATTTTAACTCTTATATCTGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAATAATAATTCCCCCAAAGACACCAGATGATCCATTGGAGACCTTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATAGTCTGATTGGTAGAATGTTCACAAATGAAAAACTTAATAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCAGGAGAATAAAAATGTTGAAAAATACAAGAAGATTGGAAACACTCCTCAGTACTACTCAACTGGACACGTTCCTAG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22296402 444 + 158406734 AAAGGCCATTTAAAAATACAAATTATAACCAATATTGACCAAATATTTTCAGAAAACCAACAGAGTCAATGTGGCAGCAACCTTAAACATAAACCTATACCTTTcccgtaaatgtatatacctactgtgtacccataaaaattaaaaGTAAAAAAAAATTAACTC--ATATCTGAGGAAATGAAGGATAATAAAGTCAAGAGAATAAGATTTTA----AGACAATAATTCCCCCCAAGATACCAGACGAT-TGCTGGAGACCTTGGAAGTTAAAATTTGATTATTTTAATAAAGCTGACAAATGGTCTGACTGGTATAATGTTCACAAATAAAAAACT---TAATGAGGCAGAAAGAAAA---AGTTCTCTCAA--------ATTATGCAGGAGAATAAAAATGTTGAAAAATATAAGAAGACTGGAAACACTCATCACTACCACTCCACTGGACATGTTCATAG
i calJac3.chr6              C 0 I 23
s canFam3.chr3               54453574 356 +  91889043 AAAGGCTATTTTAAAATACAAGTTACAACCGATATTGATCAAGTATTTTCAG---ACCAACAGAATC-ATGAGGCAGCAAGCTTAACATGAAATCTACACCT-------------------------------------GAATAAAGGTGAAAA-------------------------------------AAAGC--AAAGAACAAGATTTTAAAATAAATA-----TGTCCAAAA---ACTAGAAGGTTCACAGGAGACCTCCAAAGTTAAAATTTGATTA----CAGAAGACCAGCAAATGGTCTGCTTGGTGTAAT----AGAGCTAAAGAACTTAA-------GTGGAAAGACAA---AGTTTTCCAAGAATTATATTTTTTTCAACAACAAAAAAAAGTTGAAAAATGAATGAA-ATTGGAAAAATTACTCATTA-TAGGCAACTGGATGTATACTAA-
i canFam3.chr3              I 17 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=31703.000000
s hg38.chr15_KI270850v1_alt    388370 46 +    430880 gctcttcactcataccatcacacta---atctttacagcaacccttcac
s panTro4.chr15              80170305 46 +  99548318 GCTCTTCACTCATACCATCACACTA---ATCTTTACAGTAACCCTTCAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10181708 46 +  10928107 gctcttcactcataccatcacacta---atctttacagtaacccttcat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17258083 46 - 121039945 GCTCTTCGTTCATACCATCACACTA---ATCTTTACAGTAACCCTTCAC
i nomLeu3.chr6              C 0 C 0
s canFam3.chr3               54453930 49 +  91889043 GCTCTTTACACATGCTCTCTCTTTGTATTTCTTTACAGCAACCATTCAC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22296846 23 + 158406734 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=1046550.000000
s hg38.chr15_KI270850v1_alt    388416 1140 +    430880 gataggtactagtactaGAGGATAATTAAAATACTGAAATATTGAAATACAACAGAATTTTAAACTA-TTTGAGTTCCACCTCCAATAAAGGCTGGCAAAG-TTATTCAAACTAACCTTCTTCCTG-------AAAAAAAATGCTAACAATAAAGAGGGACATCATCTTAAAAGCATCTGAAATCTT-----ACAGGATAGAACTACTAGTCCAAATTCTTTAAAACAAAAACAAACAACAACAAGCGGAAACCAGGAAACCCTCTCCCCACCTCAAAAAAGCAAAATACCAGAACACAAAAGTCATTTTTAGTCTATGATGGAATCTCTTTGCCCATCTCAGCAAAGAT-------GGTTCTATGGCCCCAAGAAGCAAAGGAAAAGAAGTCAATGTTCAAAACATACCCAAGAAGGGAAATGAATAGGATAGTCTATCCACATTAAGCTGGGA-----CCCCCCAGAGTACCTAC-----------AACCAGAATAAAACCAGGGCCCAAAATCTCCTGCTGTGATCTctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtacaataggggaaaagcagtgaactagaatatagaaccaaaatgtatacaatacataagggagacaca-aaaaagtagaaaatatcaa----------agacacaaaagatagaatgagaaagtagaataaatatttaattacagagtcccaaaagaagagaaagaaaaatgaggcacaggaaatatatgaggagataatggttgtaaattgagtaatgaaagataccagtctatacat-----------------------------acaagaaacccaagaactcccaaggaag-a-----aaaaagataaccatatttaaactaagagtgaaacatcaga--aagcaaagggataattaaaacaaacaaggaacaaaagagaga----aaaaggtttcaaaggagagtgaccgactttt---gaaaaccattgaagcctgaacatgttcagtatatggagagtgaaatgat-aaatgccaatcaagaattgtgtaaccaccaaatacatcctaagaaatgaacgtgaga--aagagattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaatatgctccttgagcagaaggaaagtgaacccacatgga---ag---agaa----------------attcag
s panTro4.chr15              80170351 1143 +  99548318 GATAGGTACTAGTACTAGAGGATAATTAAAATATTGAAATATTGAAATACAACAGAATTTTAAACTA-TTTGAGTTCCACCTCCAATAAAGGCTGGCAAAG-TTATTCAAACTAACCTTCTTCCTG-------AAAAAAAATGCTAACAATAAAGAGGGACATCATCTTAAAAGCATCTGCAATCTT-----ACAGGATAGAACTACTAGTCCAAATTCTTTAAAACAAAAACAAACAACAACAAGCAGAAACCAGGAAACCCTCTCCCCACCTCAAAAAAGCACAATACCAGAACACAAAAGTCATTTTTAGTCTATGATGGAATCTCTTTGCCCATCTCAGCAAAGAC-------GGTTTTATGGCCCCAAGAAGCAAAGGAAAAGAAGTCAAGGTTCAAAACATACCCAAGAAGGGAAATGAATAGGACAGTCTATCCACATTAAGCTGGGA-----CCCCCCAGAGTACCTAC-----------AACCAGAATAAAACCAGGGCCCAAAATCTCCTGCTGTGATCTctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtacaataggggaaaagcagtgaactagaatatagaaccaaaatgtatacaatacgtaagggagacaca-aaaaagtagaaaataccaa----------agacacaaaagatagaatgagaaagtagaataaatatttaattacagagtcccaaaagaagagaaagaaaaatgagacacaggaaatatatgaggagataatggttgtaaattgagtaatgaaagataccagtctatacat-----------------------------acaagaaacccaagaactcccaaggaag-a-----aaaaagataaccatatttaaactaagagtgaaacatcaga--aagcaaagggataattaaaacaaacaaggaacaaaagagaga----aaaaggtttcaaaagagagtgaccgactttt---gaaaaccactgaagcctgaacatgttcagtatatggagagtgaaatgat-aaatgccaatcaagaattgtgtaaccaccaaatacatcctaagaaatgaacgtgaga--aagagattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaatatgctccttgagcagaaggaaagtgaacccacatgga---agaacagaa----------------attcag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10181754 1137 +  10928107 gataggtattagtaCTAGAGGATAATTA--------AAATATTGAAATACAACAGAATTTTAAACTA-TTTGAGttccacctccaataaaagctggctaag-ttattcaaactaaccttcttcctg-----aaaaaaaaaatgctaacaataaagagggacatcatcttaaaagcatctgaaatctt-----acaggatagAACTACTAGTCCAAATTCTTTAAAACAAAAACAAACAACCACCACCAGAAACCAGGAAACCCTCTCCCTACCTCAAAAAAGCACAATACCAGAACACAAAAGTCATTTTTAGTCTATGATGGAATCTCTTTGCCCATCTCAGCAAAGAT--------GTTCTATGGCCCCAAGAAGCAAAGGAAAAGAAGTCAAGGTTCAAAACATACCCAAGAAGGGAACTGAATAGGACAGTCTATCCACATTAAGCTGGGA-----CCCCCCAGAGTACCTAC-----------AACCAGAATAAAACCAGGGCCCAAAATCTCCTGCTGTGATCTctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtacaataggagaaaagcagtgaactagaatatagaaccaaaatgtatacaatacgtaagggagacaca-aaaaagtagaaaataccaa----------agacacaaaatatagaatgagaaagtagaataaatatttaattacacagtcccaaaggaagagaaagaaaaatgaggcacaggaaatatatgagcagataatggttgtaaattgagtaatgaaaggcaccagtctatacat-----------------------------acaagaaacccaagaactcccaaggaagaa-----aaaaagataaccatatttaaactaagagtgaaacatcaga--aagcaaagggataattaaaacaaacaaggaacaaaagagaga----aaaaggtttcaaaagagagtgactgactttt---gaaaaccattgaaacctgaacatgttcagtatatggagagtgaaatgat-aaatgccaatcaagaactgtgtaaccaccaaatacatcctaagaaatgaacgtgaga--aagagattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaacatgctccttgagcagaaggaaagtgaacccacatgga---agcacagaa----------------attcag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17258129 1143 - 121039945 GATCGGTACTAGTACTAGAGGATAATTAAAACATTGAAATACTGAAATACAACAGAATTTTAAACTATTTTGAGTTCCACCTCCAATAAAGGCTAGCAAAG-TTATTCAAACTAACCTTCTTCCTG----AAAAAAAAAAATGCTAACAATAAAGAGGGACATCATCTTAAAAGCATCTGAAATCTT-----ACAGGATAGAACTACTAGTCCAAATTCTTTaaaacaaaaacaaacaacaacaactagaaaccaggaaacCCTCTCCCCATCTCAAAAAAGCACAATACCAGAACACAAAAGTCATTTTTAGTCCATGATGGAATCTCTTTGCCCATCTCAGCAAAGAT-------GGTTCTATGGCCCTAAGAAGCAAAGGAAAATAAGTCAAGGTTCAAAACATACCCAAGAAGGGAACTGAATAGGACAGTCTATCCACATTAAGCTGGGA----CCCCCCCAGAGTACCTAC-----------AACCAAAATAAAACCGGGGCCCAAAATCTCCTGCTGTGATCTctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtaaaataggggaaaagcagtgaactagaatatagaaccaaaatgtatacaatacgtaaaggagacata-aaaaagtagaaaataccaa----------agatgcaaaagatagaacgagaaagtagaataaatatttaattacagagtcccaaaagaagagaaagaaaaataaggcacaggaaatatatgaagagataatggttgtaaattgagtaatgaaagacaccagtctatacat-----------------------------acaagaaacccaagaactcccaaggaagaa-----aaaaagataaccatatttaaactaagagtgaaatatcaca--aggcaaagggataattaaaacaaacaaggaacaaaagagaga----aaaAGGTTTCAAAAGAGAGTGACTGAC--TT---GAAAACCACTGAAGCCTG-ACATGTTCAGTATATGGAGAGTGAAATGATAaaatgccaatcaagaattgtgtaaccaccaaatacatcctaagaaatgaacatg------agagattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaatatgctccttgagcagaaggaaagtgaacccacatgga---aacaaagaa----------------attcag
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22296869 1149 + 158406734 AATAGGTACTAGTACTAGAGGAGAATTGAAGT-----AAAGCTTAAAT----CAGAATTTTAAACTA-TTTGAGttccatttccaataaaggctggccaag-ttattcaaactaaccttctttctaaaaaaaaaaaaaaaatgctaacaataaatagggacatcatcttaaaagcatctgaaaTCCT-----ACATAATAGAACTACTAATCCAAATTCTTTAAAAC--AAACAATTAAAAA------AAAACCAGGCAAGCA-CTCCCCACCTCAAAAAAGCACAATACCAGAACACCAAAGCCATTTTTAGTCTATGATGGAATCTCTTTACCCATCTCAGCAAAGTTTGGTTTTGGTTCAATGGTCCCAAGAAGCAAAGGAAAAGAAGTCAAGGTTCAAAACACACCCAAGAAGGGAATTTAATAAGACAGCCTATCCACATTAAGCCGGGACTCCCCCCGCCAAGTTACCTAC-----------AACCAGAATAAAACCAGGGCCCCAAATCTCCCGCCCTGATCTctaaaatttaaaacctcaaagatggagtttaacaactaaatgatgtacaataggggaaaagcagcgaactagaatacagaaccaaaatttatacaataagtaagggagacaca-aaaaagtagagaataccaa----------agagacaatggatagaatgacaaagtagaataaatatttaactacagactcccagaagaggagaaagaaaaatgaggcacaggaaatatatgag-aaataatggttgtaaattgagtaatcaaagataccagtctgtacac-----------------------------ataagaaacccaaaaactcccaaggaagaaaaaataaaaagataaccatatttaaactaagagtgaaacatcaga--aaacaaaggaataattaaaacaaacaaggaacaaaacagaga----aaaaggtttcaaa--agaatgactgactttt---caaaaccactgaggcctgaacatgttcagtatataaagagtgaaatgat-aaatgccaattaagaaccgcataaccaggaaatatatcctaagaaacgaacatgaaa--aagatattttcaaggaaga-----taaagatca-----------------------------------------ctcactcccagcagactcaaaataaaaatgttcatctttaacatttttaacattaaacatgctccttgagc------aaagttaacccacat-ga---agcacagaa----------------attcag
i calJac3.chr6              I 23 C 0
s canFam3.chr3               54453979 1200 +  91889043 AATAGGTACCAGTTCCTTGAGAAGGTTAAAAC-----AAAGTTTAAAT----CAAAATTTAAAACCA-TTCAAGTTTCATTTCCAGTTGTGGCTGACAAGGTTTATTCAGACTAA---TCTTCCAG-------AAAATAAAAAATACCGCTTAAGACAGACATTATCTCCACAGCATCTGAGAGCACAGAGAACAGTAGAGAACTACGAGTTTAG----TTCAGATTGAAAGCA--------------GAAACCCAGAA----------------GAGAAAGCA-AACACCAGAGCACCCAAGTCA--CTGACCCTCTGATGGCATCTGC---CCCTGCTCAGCAATATGGGGGTTTGGGTCTAAGACCTGAAAAAACAAAGGGAAAGAGGTTAAGATTCATGGCCCTGCCCACCAACAAGTCTAACAGGACACCCTGTCCTC--TAGGCTAGGA------CCCCAAGGGCACTTCAGGGTAAAAATGAACCAGCATGAAGCCAGGGACCAAAAGCTCTCAGCAAAATa-ctggaagtgagaaattcttaggtggagtttaacagcc-aatgaggcacagcacaggacaagaagtgaactagaacactgggccaaaatgtccaaaa----caaaggaaagatagaaaaaatagaagataccaaaaagaagatgagagaccaaggactgaat----aagtggagtaaatgtttaattgcag------taacaaggaaagagaaaaatgaagcagaggacataagtgaagagacaatgactg--aactaagcagggaaa---acccatccatccataaagaagcccaagaactaaaaaacaaacaaaaagaagcccaagaactcacaagcaagaa-aaataaagatattatcgtatgcagactcagagtgaaacagcagaagagacatgggtacaataaaaacaaac--tgcacaagagacagataacaagaaatttcaaaaaagaacaacggatttctcaacaaaacctttaacacctaaagataatgaacctgaatggaatggaatgat-agatagcaaccaagaatcctataaccagtaagtatgttctaagaagtcaaagtgaaatcaagacattttcatggaaaaatttttaaaattcattgccagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttcattgccagtagactcacactgaa-------------------gagaacactgaagatgttcctctggtagaaggaaagtgaacccatgtatattcagaaaagaatagggcagcccgggtgactcag
i canFam3.chr3              C 0 I 154
e mm10.chr7                  81404089 30523 + 145441459 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=221995.000000
s hg38.chr15_KI270850v1_alt    389556 241 +    430880 ag-----------aaaaaaaaaacaatgaaaagaggacacatctaagtctaagtaaacaatgactatataagatactttcttctggggttc--aaatatacacacaattgaaatgtatagcagcaacagcacaaaagaagtggggacaggataacaag--ttctgtaaggtccttgcattttctaggacgtgatgaaagcactaatttcttagacgctagtaagtcaatgataacatgttgtaatccctaggtgta
s panTro4.chr15              80171494 246 +  99548318 ag------aaaaaaaaaaaaaaacaatgaaaagaggacacatctaagtctaagtaaataatgactatataagatactttcttctggggttc--aaatatacacacaattgaaatgtatagtagcaacagcacaaaagaagtggggacaggataacaag--ttctgtaaggtccttgcattttctaggatgtgatgaaagcactaatttcttagacgctagtaagtcaatgataacatgttgtaatccctaggtgta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10182891 240 +  10928107 ag------aaaaaaaaaaaacaacaatgaaaagaggacaca------tctaagtaaataatgactatataagatactttcttctggggttc--aaatatatacacaatttaaatgtatagtagcaacagcacaaaagaagtggggacaggataacaag--ttctgtaaggtccttgcattttctaggacatgatgaaagcactaatttcttagatgctagtaagtcaatgataacatgttgtaatctctaggTGTA
i ponAbe2.chr15_random      C 0 M 704
s nomLeu3.chr6               17259272 244 - 121039945 ag-------aaaaaaaaaaaaaacaatgaaaagaggacacatctaagtctaagtaaataatgactatataagatactttcttctggggttc--aaatatatacacagttgaaatgtacagtagcaacagcacaaaagaagtgggt-taggataacaag--ttctataaggttcttgcattttctaggacgtgatgaaaggactaatttcttagatgctagtaagtcaatgataacatgctgtaatccctagatgta
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298018 250 + 158406734 ggaaaaaaaaaaaaaaaaaacaacaacaatgaaaagacgcatctaagtctaagtaaatactgactatgtaagatgctttcttctgggattc--aaatatatacacaattaaaatgtatagtagcaacagcacaaaagcagtggagacaggataacaag--ttctataaggtccttgtattttctaaga-gtgatgaaagcactaatttgttagatgctagtaagtcaatgataacgtgttataatgctcaga-gta
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54455333 219 +  91889043 --------aaaaaaaaaaaagaataa--gaaaaaagacacatgtgagcaagactaaatactagttatataaaataattccttctggaatttaaaaatctatacacaattaaaatgcatagtaacaatactacaaaagctgtgggaacagggtaatcagacttgtacaagtttcttgcattttccaggaagGAATGAAAAAACTAGGGT-----AGAATAGTGGAACAATGTTTA----------------------
i canFam3.chr3              I 154 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=68521.000000
s hg38.chr15_KI270850v1_alt    389797 129 +    430880 gccacaaaaagatcagtaaatata----------tgtttgcccaagaggccatggaagaaagaa--------------aaagga-------ataGAACGTGAAGAACAA--AGAAGACTCAGTAAAGATGATAGGTTTAAGCATAA-CA------AAACGACATGGGTT
s panTro4.chr15              80171740 129 +  99548318 gccacaaaaagatcagtaaatata----------tgtttgcccaagaggccatggaagaaagaa--------------aaagga-------ataGAACGTGAAGAACAA--AGAAGACTCAGTAAAGATGATAGGTTTAAGCATAA-CA------AAACGACATGGGTT
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17259516 129 - 121039945 gccacaaaaagatcagtaaatata----------tgtttgcccaagaggccgtggaggaaagaa--------------aaagga-------ataGAAGATGAAGAACAA--AGAAGACTCAGTAAAGATGATAGGTTTAAGCATAA-CA------AAACAACATGGTTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298268 145 + 158406734 gccacaaaaagatcagtaaaTATGTTTACTCACTTGTCAGACAAGGAGGCCATGGAAGAAAGAA--------------AAAGGA-------ATAGAACATGAAGAACAA--AGAAGACTCAGTAAAGATGACAGGTTTGAGCACAA-CAATAGTTAAACCACATGGTTC
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54455552 130 +  91889043 --GACAACAGAAGAAGGAAGTCTG-------------------------------AAGAAAGAATACCTGATTAATCTAAAAGACAGTCACATAGGACATGAAGGACAAAGAGAAGATCCAATAAAGTtgatagatttaaacataagca------tattgacaggtgtt
i canFam3.chr3              C 0 I 18935
e mm10.chr7                  81404089 30523 + 145441459 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e ponAbe2.chr15_random       10183131 704 +  10928107 M

a score=157572.000000
s hg38.chr15_KI270850v1_alt    389926 370 +    430880 TGGACAGGGGGAGGTTGGGTGGGTTCTTCATCCTCTCTCATCATAAACTAC--TTTTTTAAAGAACCCAGAACTTGTCtttttttttttttttttttttttggagacaaagttttgctctattgcccaggctagagtgcagtggcgcaacctccgctcactgcaacctccacctcccgagttcaagcaattctccaccctcagcctcccgagtagctgggattacaggtgcgtgccaccacaccgagctaatttttgtattttttagtagagacagggtttcgtcacgttggtcaggctggtctcgaactcctggcctcaggtgatccgcccccacctcgacctcccaaagtgctgggtttacaggcatgag
s panTro4.chr15              80171869 367 +  99548318 TGGACGGGGGGAGGTTGGGTGGGTTCTTCATCCTCTCTCATCATAAACTAC--TTTTTTAAAGAACCCAGAACTTGTC---ttttttttttttttttttttggagacaaagttttgctctattgcccaggctagagtgcagtggcgcaacctccgctcactgcaacctccacctcccgagttcaagcaattctccaccctcagcctcccgagtagctgggattacaggtgcgtgccaccacaccgagctaatttttatattttttagtagagacagggtttcgtcatgttggtcaggctggtctcgaactcctggcctcaggtgatccgcccccgcctccacctcccaaagtgctgggattccaggcatgag
i panTro4.chr15             C 0 I 698
s nomLeu3.chr6               17259645 343 - 121039945 TGGAGCGGGGGAGGTTGGGTGGGTTCTTCATCCTCTC---TCATAAACCAC--TTTTTTAAAGAACCCAGAACTTGtt----------------------tggagacaaagttttgctctattgcccaggctagagtgcagtggtgcaatctccgctcactgcaacctccacctcctgagttcaagcaattctcctccctcagcctcctgagtagctgggattacaggtgcgtgccaccacacccagctaatttttgtattttttagtagagacagggtttcgtcatgttggtcaggctggtctcgaactcctggcctcaggtgatcca--cccgcctggacctcccaaagtgctgggattacaggcatgag
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298413 353 + 158406734 C------AGGGGGGTTGGGTGGGTTCTTCAGCCTCTC---TCATAAACTACATTTTTTTAAAGAAGCCAGAACTTGTC-------ACttttttttttttttgtagacagagttttgctctattgctcaagctggagtgcagtgatgtgatctcagctcactgcagtgtccacctcccaggttcaagcaattctcctccctcagcctactgagtggctggggttacaggcacgcatcataacatccaactcatttctgta-tctttagtagagatggggtttcgtcacattggtcaggctggtctcaaactcctaacctcaggtgatcca--cctgccttggcctcccaaagtgctgggattacaggtgtgag
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e ponAbe2.chr15_random       10183131 704 +  10928107 M

a score=305.000000
s hg38.chr15_KI270850v1_alt    390296 3 +    430880 tca
s nomLeu3.chr6               17259988 3 - 121039945 aca
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298766 3 + 158406734 cca
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e ponAbe2.chr15_random       10183131 704 +  10928107 M
e panTro4.chr15              80172236 698 +  99548318 I

a score=2511.000000
s hg38.chr15_KI270850v1_alt    390299 6 +    430880 ccgtgc
s panTro4.chr15              80172934 6 +  99548318 CCGTGT
i panTro4.chr15             I 698 C 0
s nomLeu3.chr6               17259991 6 - 121039945 ccgtgc
i nomLeu3.chr6              C 0 M 100
s calJac3.chr6               22298769 6 + 158406734 cagtgc
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e ponAbe2.chr15_random       10183131 704 +  10928107 M

a score=6070.000000
s hg38.chr15_KI270850v1_alt    390305 38 +    430880 ttggGGGTACAACTTGTCACTTCTAATGT--GGTTTTCTT
s panTro4.chr15              80172940 38 +  99548318 TTGGGGGTACAAATTGTCATTTTTAATGT--GGTTTTTTT
i panTro4.chr15             C 0 C 0
s calJac3.chr6               22298775 40 + 158406734 ccggcTGTAGAACCTGTCACTTCTAATATGAGGTCTTTTT
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e nomLeu3.chr6               17259997 100 - 121039945 M
e ponAbe2.chr15_random       10183131 704 +  10928107 M

a score=45452.000000
s hg38.chr15_KI270850v1_alt    390343 105 +    430880 ----AAAAAAAAAAA-----------GATTTTTACActgggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagtccaagacc
s panTro4.chr15              80172978 113 +  99548318 ----aaaaaaaaaaaaaaaaaaaaaaGATTTTTACActgggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtgga---cctgaggtcaggagtccaagacc
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17260101 105 - 121039945 ----AAAAAAAAAAA-----------TTTTTTTACgctgggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagtccgagacc
i nomLeu3.chr6              M 100 C 0
s calJac3.chr6               22298815 120 + 158406734 AATTTAAAAACAAAACAAAAAAAACAGATTTTTACgctgggcacagtggctcatgactgtaatctcagcactttgggagaccgagacaggtagattacctgaagtcaggagtcagagaca
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e ponAbe2.chr15_random       10183131 704 +  10928107 M

a score=157198.000000
s hg38.chr15_KI270850v1_alt    390448 196 +    430880 agccaggccaacatgactaaaccccgtttctactaaaaatacaaaaattagccaggcatggtggcaggcgcctgtaatcccagctactcaggagtctgagacaggacaatcgcttgaaaccaggaggcggaggttgcagtgacctgagatcacgccactgcactccagcctgggcaacagagtgacaccctgtccc
s panTro4.chr15              80173091 196 +  99548318 agccaggccaacatgactaaaccccgtttctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtaaccccagctgctcaggagtctgagacaggacaatcgcttgaaaccaggaggcggaggttgcagtgacctgagatcacgccactgcactccagcctgggcaacagagtgacaccctgtccc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10183835 196 +  10928107 agccaggccaacatgactaaaccccatttctactaaaaatacaaaaattagccaggcgtggtggcaggcgcctataatcccagctactcaggaggctgagacaggacaatcacttgaaaccaggaggcggaggttgcagtgacctgagatcgtgccattgcactccagcctgggcaacagagtgacaccctgtccc
i ponAbe2.chr15_random      M 704 C 0
s nomLeu3.chr6               17260206 196 - 121039945 agccaggccaacatgactaaaccctgtttctactaaaaatacaaaaattagccaggcgtggtggcaggcgcctgtaatcccagagactcaggaggctgagacaggacaatcgcttgaaatcaggaggcggaggttgcagtgacctgagatcgtgccactgcactccagcctgggcaacagagtgacaccctgtccc
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298935 195 + 158406734 agcctagccaacatgatgaaaacccatctctactaaaaatacaaaaatcagctgggcatggtggcaggtacccgtagtcccagctactcaggaggctgagacaggagaatcacttgaacccaggaggcagaagttacagtgagttgagattctg-aattgcactccagcctgggcgacagagcaagactctatctc
i calJac3.chr6              C 0 I 1245
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=576891.000000
s hg38.chr15_KI270850v1_alt    390644 1323 +    430880 CTCCACCCAACAAAAAAATTTTTTTTCTATTTCAGAACTATaaataaagatttgcagaatggattaaaaaccaatatcccaactatatgctgctttccagggtcatgtcttacaatataaggtcactgattgacaggttgaaaaacatgagaaaagatatgccattcaagcaccaaaaatgctgttgtaaccaaataggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgcatttcataagtatcgagagatcaatctacaaagaagatataattctaaaacttaataaaagcatacaaaaatcaataaagccaaacaacaaccctaaaaggagagataattgagat---aacgaaagctagagattttaacacatttctcttagtaattgatagaataagcatatattccccctgcaaaaaagaatatagaaaatctgaaacatcaaattagtaaatttgacctaacagacataaacagaacactgcatccaacatctgctcagtacactgtctttataagtatatctagaacatttaacaaagtagagcatatgttagactataaagcaagcctcaacaaatttgaagactaaaattatgttagaggatgttctatgaccatagtggaattaagataaaaattcataacaaaaagacaactagaaagtcccaaatacctgaaagctgtactacagacttcctcagggaccaacaagacatccaatggaaattagaaaatagtcaactaaatgataattaaaaagacttcacaactcataaaatgcacttaaatccatgctgagcgggaaatttatagtctttggtaatgtattaaaaaGATTAAAAACCATGGgccaagaatggtgactcatgcctgttatacaagtgctttgggaggctcagatgggaggatcacttgagcccaggagtttgaggttacagtaaggtatgattgtgccactaccttagtgacagggcaagatcctgcatccagaaaTATATGTATATAA-AATCggccgggcgcggtggctcacacctctaatcccagcactttgggaggccgaggcgaatggatcacttgaggtcaggagtttgaga-------------------------------ccagcctggccaacatggtgaaaacccgtctctactaaaaa------------------------------------------------------------------------------cacaaaaatta----------gctgggcatggtggcaagtgcctgtaatcccagctactcaggaggctgagacagaagaatcgcttgaacccgggaggcggaggttacagtgagccgagatcatgcatggcactccagcctgggcgacagagc--aacccttcatctcaaaaactaaat--------aaataaaa
s panTro4.chr15              80173287 1321 +  99548318 CTCCCCCCACAAAAAAATTTTTTTTTCTATTTCAGAACTATaaataaagatttgcagaatggattaaaaaccaatatcccaactatatgctgctttccagggtcatgtcttacaatataaggtcactgattgacaggttgaaaaacatgagaaaagatatgccattcaagcaccaaaaatgctgttgtaaccaaatgggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgtatttcataagtatcgagagatcaatctacaaagaagatataattctaaaacttaataaaagcatacaaaaatcaataaagccgaacaacaaccctaaaaggagagataattgagat---aatgaaagctagagattttaacacatttctcttagtaattgatagaataagcatatattccccctgcaaaaaagaatatagaaaatctgaaacatcaaattagtaaatttgacctaacagacataaacagaacactgcatgcaacatctgctcagtacactgtctttataagtatatctagaacatttaacaaagtagagcatatgttagactataaagcaagcctcaacaaatttgaagactaaaattatgttagaggatgttctatgaccatagtgaaattaagataaaaattcataacaaaaagacaactagaaagtcccaaatacctgaaagctgtact--agatttcctcagggaccaacaagacatccaatggaaattagaaaatagtcaactaaatgataattaaaaagacttcacaactcataaaatgcacttaaatccatgctgagcgggaaatttataggctttggtaatgtattaaaaagaTTAAAAACCATGGgccaagaatggtgactcatgcctgttatacaagtgctttgggaggctcagatgggaggatcacttgagcccaggagtttgaggttacagtgaggtatgattgtgccactaccttagtgacagggcaagatcctgcatccagaaaTATATGTATATAA-AATCggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgaatggatcacttgaggtcaggagtttgaga-------------------------------ccagcctggccaacatggtgaaaacccgtctctactaaaaa------------------------------------------------------------------------------tacaaaaatta----------gctgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgagacagaagaatcgcttgaacccgggaggcggaggttacagtgagccgagatcatgcatggcactccagcctgggcgacagagc--aacccttcatctcaaaaactaaat--------aaataaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10184031 1332 +  10928107 cacca--aaaaaaaaaCCTTTTTTTTCTATTTCAGAACTATaaataaagatttgcagaatggattaaaaaccaatattccaactatatgctgctttccagggtcatgtcttacaatataaggtcactgattgacaggttgaaaaacatgagaaaagatatgccattcaagcaccaaaaatgctgttgtaaccaaacaggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgcatttcataagtatccagagatcaatccacaaagaagatataattctaaaacttaataaaagcatacaaaaatcaataaagccaaacaacaaccctaaaaggagagataattgagatcacaacaaaagctagagattttaacacatttctcttagtaactgatagaataagcatatcttccccctgcaaaaaagaatacagaaaatctgaaacatcaaattagtaaatttgacctaatggacataaacagaacactgcatccaacatctgctcagtacactgtctttataagtatatctagaacatttaacaaagtagagcatatgttagactacaaagcaagcctcaacaaatttaaagactaaaatcatgttagaggatgttctatgaccatagtggaattaagataaaaattcataacaaaaagacaactagaaagtcccaaatacctgaaagctgtactacacacttcctcagggaccaacaagacatccaatggaaattagaaaatagtgaactaaatgataattaaaaagacttcacaactcataaaatgcacttaaatccatgctgagagggaaatttatagtctttggtaatgtattaaaaaGATTAAAAACCATGGgccaagaatggtgactcatgcctgttatacaagtgctttgggaggctcagatgggaggatcgcttgagcccaggagtttgaggttacagtgaggtacgattatgccactaccttagtgacagggcgagaccctgcatccagaaaTATATGTATATAA-AATCggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgaatggatcacttgaggtcaggaatttgaga-------------------------------ccagcctggccaacatggtgaaaaccagtttctactaaaaa------------------------------------------------------------------------------tacaaaaatta----------gctgggcatagtggcgggtgcctgtaatccgagctactcaggaggctgagacagaagaatcgcttgaacccgggaggtggaggttacagtgagccgagatcatgcattgcactccagcctgggcgacagagc--aacccttcatctcaaaaactaaataaataaacaaataaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17260402 1327 - 121039945 cccca--tcaaaaaaaTTTTTTTTTTCTATTTCAGAACTATaaataaagatatgcagaatggactaaaaaccaatatcccaactatatgctgctttccagggtcatgtcttacaatataaggtcactgattgacaggttgaaaaacatgagaaaagatatgccattcgagcaccaaaaatgctgctgtaaccaaacaggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgcatttcataagtatccagagatcaatccaca---aagatataattctaaaacttaataaaagcatacaaaaatcaatacagccaaacaacaaccctaaaaggagagataattgagatcacaacaaaagctagggattttaacacatttctcttagtaactgatagaataagcctatcttccccctgcaaaaaagaatatagaaaatctgaaacatcaaattagtaaatttgacctaatggacataaacagaacactgcatccaacatctactcagtacactgtttgtttaagtatatctagaacatttaacaaagtagagcatatgttagactataaagcaagcctcaacaaatttaaagactgaaattatgttagaggatgttctatgatcatagtggaattaagataaaaattcacaacaaaaagccaactagaaagtcccaaatacctgaaagctgtactacacacttcctcagggaccaacaagacatccaatggaaattagaatatagtcaactaaatgataattaaaaagatttcac---------------------------------------------------------------------------------ggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgaagcgggcggatcacctgaggtcaggagttcgagacca-----------------------gcctggccaacatggtgaaaccccgtctctactaaaaaat---tataataattagccgggcatggtggcacaggcctataatcccagctactcaggaggctgaggcaggagaattgcttgagccggggaggcggaggttgcagtaagccaagattgtgccactgcattccagcctggctgacaaagcgaga--ctgtctccaaaaaaaaaaaaaaaaagacttcacaactcataaaatgcacttaaatccatgctgagtgggaaatttatagtctttggtaacatattaaaaagaTTAAAAAACACGGgccaagaatggtgactcatgcctgttatacaagtgcgctgggaggctcagatgaaaggatcgcttgaacccaggagtttgaggttacagtgagctatgactgtgc----cact---acctgagtgacagggcgagaccctgcatccagaaaTATATGT--------ATGTAAAA
i nomLeu3.chr6              C 0 I 6890
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=887814.000000
s hg38.chr15_KI270850v1_alt    391967 3332 +    430880 ataaataaaaTAAAATCAATGATCAgggtaatattagtgaaatggc-gaataaggacctctgacaattcttcctacataaaaaccaatgagaacactagcaaaaaattgtcacaataaactttgtcagaactctggaaattaaaccaaaagcttgcagaaatctggggagtatttgtttaaaaaataaaaacaagatagctgaatcttggtaagaacaacattctttgtggccttttaatttgtattattttcataccttcctctctagctctactacaaccctgaaaaccagcaacctgcatcacagcaaaaattagcagcctggaagccactgaaaggacaaaacagttggagctcaagccccatcctcaatgaattgtcattacttgaccttttacatggttacacacaaggtcccacttatgtggttgtatttgacctacctccgagctcaccaagtacagccagccatttcccatttcccagggaaagtttatttaaaaaaaaaaaatcagaggcaattattaaatatcccaggtgcctgaggcattaggcaacagtttaggaactcaacaggctaaccaaaaaagcttaaaaggctggggaatgaaatatgaggctttataaaaaactcaatatattcctgggaatctaggctaacctgcatgcttgaaagaaagc-----attagaaggccctaagctctctctcctggttaaccttgaggctctgtacaaacagcaagtgaagaatacaagaatactgcagagttgtaaactgtctggctcagtgtggagggcatactgggccccttgtcaaagactgggaaacttactggttctaagcatgtaaggcagtttctgtccatcattagccgactactaagataaccaagcagagacttcagtggccacatatttaaaaaatgcgaagtttacagaactagctgagaagagccactaaatgaacaacaacaaacaagaacccttcagcctgtggaggacggataacccgatttccagacttgctacattatttccaatgtccaattttcaagacaaaatttataagacattcaaagaaacaagtatggcccattcatgggggaaaaaatcactaaaaatggtccctgacaaagggcagacattacatgtattagacaaagactctagctattttcaatatgtatgaagagctaaaggatagcatatctggctgtggacaatggctctgtaatcccagcactttgagaggcccagaacgaaggatcacttgaggccaggagttcaagccaagcctgggcaacatagcaaggctccattgctacaaaaaaCAAAACAACGggccaggtgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatcacaaggtcaggagattgagagcatcctggctaacagggtgaaaccctgtctctactaaaatacaaaaaattagctgggcatggtagtgggcacctgtagtcccagctactcaggaggctgatgcaggagaatggtgagaacccaggaggcggagcttgcagtgagccgagattgatcgcgccactacactccagcctgggtgacagagcaagactccatctc-------aaaaaaaaaaaaaaagacagaaacaagaaaccatatccaaggaactaaagtatgagaataatgtctcaccaaatagagaatattactaaagagacagaaattacatataaaaaagaaccaattagaaattctagagctgaaaggtataataactgcaatgaaaaattcactacaggggctcaacagcagatttaaaaagaaaaacaatcagcaaggctgaagatacagacatggagattatccagtctgaggacaagaaactacagagccacagagacatctgggatacagtcaagtataccaagatacacatattagaagtcccaaagcagatgagggaaagagac----agaatatgtgaagaaataatggcagaaaacgttgatgaaaaacattaatctacatattcaaaaaatccaatgaactgcaagtaggataagctcaaagagacctacaccaagacacattaaatggtcaaaagccggagacatagaaagggcaaaactgcaagagagaagcaatcatcatatatgacatacaagggattttcaataacattaatagctgatttcttaccagaaattgtggagccagaaggcagtaggatgacatactgagggagttaaaagaagaaactcaaccaagaa-ttttttatcaccaacacgatccttcaagaatggagaaattaagacattcctagacaaaaagggagtttgtcactagcagacctcccctacaacaaatactaaagagcatctttcccagtgaagtgaaagaatgctagacagttactttaatccacatgaagtaataaagaagaccaaaaaagataactacataggtaaatataatagagagtatatttttgtc-ttttttttctcctatcagatttaaaagataaccaaatgggggcgggataagaaggtattggtaaaagggtacaaagttttgaccaggataaaaaagttctgaagagccattgtatagaatgacggtaactatagttgtatagttgtatacaactatacaatgtattctatagttgtacttgctgagattttagatgttctcaccacaaaaatataagtatgtgaggtaatgaatatattagctttaatcatttcacagcgtatacatatatcagaacatcacactgtacaccataaagttctcatttgtcaattatatcttaaagctaggaagaagacaaaagatagctaaagttaattataaatctgtattgataggcacaccatgtataaacacctatttgtggccgggcacagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatgaagaatccctgtctctactaaaaatacaaaattagccaggtgtgatgccgcatgtctgtaatccccgttacccgggaggctgggagaggagaatcgcttgaacccaggaggcagaggttgtggtgaggcgagatcgcgccattgtactccagcctgggcaacaacagcaaaactccacctcaaaaaaaaa--gacatatttgtaatacattaacagcacaagaggaggagaaaataaagcgatactggtgcaaagtttctgtatactactgaaaataaaattggttattatttgacctagattgttaatataaattaagatgctagttccagctgggcat
s panTro4.chr15              80174608 3332 +  99548318 ataaataaaaTAAAATCAATGATCAgggtaatattagtgaaatggc-gaataaggacctctgacaattcttcctacataaaaaccaatgagaacactagcaaaaaattgtcacaataaactttgtcagaactctggaaattaaaccaaaagcttgcagaaatctggggagtatttgtttaaaaaataaaaacaagatagctgaatcttggtaagaacaacattctttgtggccttttaatttgtattattttcataccttcctccctagctctactacaaccctgaaaaccagcaacctgcatcacagcaaaaattagcagcctggaagccactgaaaggacaaaacagttggagctcaagccccatcctcaatgaattgtcattacttgaccttttacatggttacacacaaggccccacttatgtggttgtatttgacctacctccgagctcaccaagtacagccagccatttcccatttcccagggaaagtttgtttaaaaaaaaaaaatcagaggcaattattaaatatcccaggtgcctgaggcattaggcaacagtttaggaactcaacaggctaaccaaaaaagcttaaaaggctggggaattaaatatgaggctttataaaaaactcaatatattcctgggaatctaggctaacctgcctgctggaaagaaagcattagattagaaggccctaagctctctctcctggttaaccttgaggctctgtacaaacaggaagtgaagaatacaagaatactgcagagttgtaaactgtctggctcagtgtggagggcatactgggccccttgtcaaagactaggaaacttactagttctaagcatgtaaggcagtttctgtccatcattagccaactactaagataaccaagcagagacttcagtggccacatattaaaaaaatgcgaagtttacagaactagctgagaaaagccactaaatgaacaa-aacaaacaagaacccttcagcctgtggaggacggataacccgatttccagacttgctacattattttcaatgtccaatttacaagacaaaatttataagacattcaaagaaacaagtatggcccattcatggggaaaaaaatcactaaaaatggtccctgacaaagggcagacattaaatgtattagacaaatactctagctattttcaatatgtatgaagagctaaaggataccatatctggctgtggacaatggctctgtaataccagcactttgagaggcccagaacgaaggatcacttgaggccaggagttcaagccaagcctgggcaacatagcaaggctccattgctacaaaaaacaaaacaaCGggccgggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcaggt-gatcacaaggtcaggagattgagagcatcctggctaacagggtgaaaccctgtctctactataatacaaaaaattagctgggcatggtagtgggcacctgtagtcccagctactcaggaggctgatgcaggagaatggtgagaacccaggaggcggagcttgcagtgagccgagattgatcgcgccactacactccagcctgggtgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaagacagaaacaagaaaccatatccaaggaactaaagtatgagaataatgtctcaccaaatagagaatattactaaagagacagaaattacatataaaaaagaaccaattagaaattctagagctgaaaggtataataaccgcaatgaaaaattcactacaggggctcaacagcagatttaaaaagaaaaacaatcagcaaggctgaagatacagacatggagattatccagtctgaggacaagaaactacagagccacagatacatctgggatacagtcaagtataccaagatacacatattagaagtcccaaagcagatgagggaaagagac----agaatatgtgaagaaataatggcagaaaacgttgatgaaaaacattaatctacatattcaaaaaatccaatgaactgc-------ataagctcaaagagacctacaccaagacacattaaactgtcaaaagccagagacatagaaagggcaaaactgcaagagagaagcaatcatcatatatgacatacaagggattttcaataacattaatagctgatttcttaccagaaattgtggagccagaa-gcagtaggatgacatact----gagttaaaagaagaaactcaaccaagaa-ttttttatcagcaacacgatccttcaaaaatggagaaattaagacattcctagacaaaaagggagtttgtcactagcagacctcccctacaacaaatactaaagagcatctttcccagtgaagtgaaagaatgctagacagttactttaatccacatgaagtaataaagaagaccaaaaaagataactacataggtaaatataatagagagtatatttttgtc-ttttttttctcctatcagatttaaaagataaccaaatgggggcgggataagaaggtattggtcaaagggtacaaagttttgaccaggatgaaaaagttctgaagagccattgtatagaatgacggtaactatagttgtatagttgtatacaactatacaatgtattctataggtgtacttgctgagattttagatgttctcaccacaaaaatataagtatgtgaggtaatgaatatattagctttaatcatttcacaatgtatacatatatcagaacatcacactgtacaccataaagttctcatttgtcaattatatcttaaagctaggaagaagataaaagatagctaaagttaattataaatctgtattgataggcacaccatgtataaacacctatttgtggccgggcacagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggcggatcacctgaggtcgggagttcgagactagcctgaccaacatgaagaatccctgtctctactaaaaacacaaaattagccaggtgtgatgccgcatgtctgtaatccccgttacccgggaggctgggagaggagaatcgcttgaacccaggaggcagaggttgtggtgagctgagatcgcgccattgtactccagcctgggcaacaagagcaaaactccacctcaaaaaaaaaacgacatatttgtaatacattaacagcacaagaggaggagaaaataaagcgatactggtgcaaagtttctgtatactactgaaaataaaattggttattatttgacctagattgttaatataaattaaggtgctagttccggctgggcat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10185363 3330 +  10928107 ataaataaaACAAAATCAATGATCAGggtaatattagtgaaatggcagaataaggacctctga-aattctttctacatgaaaaccaatgagaacactagcaaaaaattgtcacaataaactttgtcagaactctggaaattaaaccaaaagcttgcagaaatctggggagtatttgtttaaaaaataaaaacaagatagctgaatcttggtaagaacaacattctttgtggccttttaatttgtattattttcatacctttatccctagctctactacagccctgaaaaccagcaacctgcatctcagcgaaaattagcagcctggaagccactgaaaggacaaaacagttggagctcaagccccatcctcaacgaattgtcattacttgaccttttacatggttacacacaaggccccacttatgtggttgtatttgacctacctccgagctcaccaagtacagccagccatttcccatttcccagggaaagtttgttt-aaaaaaaaaaatcagaggcaattattaaatatcccaggtgcctgaggcattaggcaacagtttaggaactcaacaggctaaccaaaaaagcttaaaaggctggggaatgaaatatgacgctttataaaaaactcaatatattcctgggaatctaggctaacctgcatgcttgaaagaaagcattagattagaaggccctaagctctctctcctggttagccttgaggctctgtacaaacaggaagtg--------aagaatactgcagagttgtaaactgtctggctcagtgtggagggcattctgggccccttgtcaaagactgggaaacttactggttctaagcatgtaaggcagtttctgtccatcattagccgactactaagataaccaagcagagacttcagtggccacatattaaaaaaatgcaaagtttacagaactagctgagaaaagccactacgtgaacaacaacaaacaagaacccttcagcctgtggaggacggataacccgatttccagacttgctacattatttccagtgtccaattttcaagacaaaatttataagacattcaaagaaacaagtatggcccattcatggggaaaaaaatcactaaaaatgatccctgacaaagagcagacattacatgtattagacaaagactctagctattttcaatatgtttgaagagctaaaggataccatatctggctgtggacaatggctctgtaatcccagcactttgagaggccaagaaggaaggatcacttgaggccagaagttcaagccaagcctgagcaacatagcaaggctccattgctacaaaaaacaaaaCAACAggccgggtgtagtggctcacacctgtaatcccagaactttgggaggccaaggcgggcagatcacaaggtcaggagattgagaccatcctggctaacagggtgaaaccctgtctctactaaaatacaaaaaattagctgggcatggtagtgggcacctgtagtcccagctactcaggaggctgatgcaggagaatggtgagaacccaggaggcggagcttgcagtgagccgagattgatcatgccactgcactccagcctgggtgacagagcaagactccatctc--------aaaaaaaaaaaaaagacagaaacaagaaaccatatccaaggaattaaagtatgagaataatgtctcaccaaatagagaatattactaaagagacagaaattacatattaaaaagaaccaattagaaattctagagctgaaaggtataataactgcaatgagaaattcactacaggggctcaacagcagatttaaaaagaaaaagaaccagcaaggctgaagatacagacatggagattatccagtctgaggacgagaaactacagagccacagagacatctgggatacagtcaagtataccaagatacacatattagaagtctcaaagcagatgagggaaagagacagaaagaatatgtgaagaaataatggcagaaaacattgatgaaaaacattaatctacacattcaaaaaacccaatgaactgcaagtaggataagctcaaagagacctacaccaagacacattaaactgtcaaaagccagagacatagaatggggaaaactgcaagagagaagcaatcatcatatatgacatacaagggattttcaataacattaatagctgatttcttaccagaaattgtggagccagaaggcagtaggatgacatactgagggagttaaaagaagaaactcaaccaataatttttttatcagcaacacgatccttcaaaaatggagaaattaagacattcctagacaaaaagggagtttgtcactagcagacctcccctacaacaaacactaaagagcatctttcccagtgaagtgaaagaatgctagacagttactttaatccacatgaagtaataaagaagaccaaaaaagataactacataggtaaatataaaagagagtatatttttgtctttttttttctcctatcagatttaaaagataactgaatgggggcaggacaagaaggtattggtcaaagggtacaaagttttgactaggatgaaaaagttctgaagagccattgtatagaatgatggtaactatagttgtatagttgtatacaactatacaatgtattctatagttgtacttgctgagattttagatgttctcaccacaaaaatataagtatgtgaggtgatgactatattagctttaatcatttcacaatgtatacatatatcagaacatcacactgtacaccataaagttctcatttgtcaattatatcttaaagctaggaagaagataaaagatagctaaagttaattataaatctgtattgataggcacaccatgtataaagacatatttgtggccaggcacagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggcagatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaatccccgtctctactaaaaatacaaaattagccaggtgtgatgccgcgtgtctgtaatcccagctacccgggaggctgggagaggagaatcgcttgaacctgggaggcggaggttgtggtgagccgagatcacgccattgcattccagcctgggcaacaagagcaaaactccacctcaaaaaaaaa--gacatatttgtattacattaacaacacaa---gaggagaaaataaagtgatactggtgcaaagtttctgtatactactgaaaataaaattggttattatttgacctagattgttaatataaattaaggtgctagttccagctgggcat
i ponAbe2.chr15_random      C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e nomLeu3.chr6               17261729 6890 - 121039945 I

a score=26489.000000
s hg38.chr15_KI270850v1_alt    395299 351 +    430880 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacttgagttcaggggtttgagaccagcctggccaacatggcgaaaccttgtctctaactaaaaatacc-aaaaaaattagccgggcatggtgatgggtacctggtatcccagctactcaggaggctgag---ggagaactgcttgaacccaggagctgaggggttacagtgacccgagatggcaccactgcactccaacctgggtgacacagggatactccgtctcaaaaaaaaaaaaaaaaagctagttctcagcacatgcgctaagaaaataacttaaaaatacatagta----aggccgggcgc
s ponAbe2.chr15_random       10188693 337 +  10928107 ggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcagatcacttgagttcaggggtttgagaccagcctggccaacatggcaaaaccttgtctctaactaaaaataccaaaaaaaattagccgggcatggtgatgggtacctgtgatcccagctactcgggaggctgagggaggagaactgcttgaatccgggagctgaggggttacagtgacccgagatggcaccactgcactccaatctggatgacacagcgagactcc----------------------gctagttctcagcacatgcgctaagaaaataacttaaaaatacacagtaaaagaggccaggcat
i ponAbe2.chr15_random      C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e panTro4.chr15              80177940   0 +  99548318 C

a score=12478.000000
s hg38.chr15_KI270850v1_alt    395650 54 +    430880 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcac
s panTro4.chr15              80177940 54 +  99548318 ggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10189030 54 +  10928107 agtagctcatgcctgcaatcgcagcactttgggaagccaaggtgggaagatcac
i ponAbe2.chr15_random      C 0 I 6287
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e nomLeu3.chr6               17261729 6890 - 121039945 I

a score=215880.000000
s hg38.chr15_KI270850v1_alt    395704 2481 +    430880 --gaggtcaggagatcgagaccatcccggctaaaatggtgaaaccccgtctcta-ctaaaaatac--aaaaaattagccgggcgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcg-gagcttgcagtgagccgagatcccgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaa-----------------------------------------tacatagtaaaagaggccaggcatagtagctcatgcctgcaatcccagcactttgggaagccaaggtgggaagatcacttaaggccaggagtttgacaccagcctgggtgacagagcaagactttgtctctttaaaaaaaacaagaaAcatatatataagaatgacaaggaaattaaagagacaaggaaattaaagaaacaaggaaattaaaatgtcataggattttatactagaaaatatcttaacacaaaagaaagcagtaatggaagaatagggggaaaagacacaagacatatggaaaacaaacagaaaaatggcaggtgtatatcttatcagtaattatattaaatgtagatggatcaaactcttgaataaatgacagactgacagaatggactttttaaaagcatgatccaaatatatactgcacaacaggagatacactttaagactcaaagacacaaatagggctgggcacggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattacccaggtgtggtggtgtgtgcctgtagtctcagctactcgggaggctgagacaggagaattgcttgaactgggaagcagaagttgcagtgagccaagatcacaccactgcactccagcctggatgacagagcgagactcaagtctcaaggaaaaaaacaaagacacaaaagacacaaataggttgaaaggatggaaaaaagtataccctgcaaataataaccaaatgagaggtagaataactgtgcctattaccagacaaaacagacattaagacaaaaattgttactagagataaaggaggacattttataataaaagggttaatctatcaaaaaaaatttaacaattataaacaccaatgaacctaacacagaccaccaaaatatatgcaacaaaaactgacagaaatgataggagaaacagatacttcaacagtaacactattgctggaaacatcaatagctcactttcagcaatgatggacagaaactgccttacatgcttagaaccagtaagtttcccagtctttgacaaggggcccagtatgccctccacactgagccagacagtttacaactctgcagtattctt--------cacttcttgtttgtacagagcctcaaggttaaccaggagagagagcttagggccttctaatctaatgctttctttcaagcatgcaggttagcctagattcccaggaatatattgagttttttataaagcctcatatttcattccccagccttttaagcttttttggttagcctgttgagttcctaaactgttgcctaatgcctcaggcacctgggatatttaataattgcctctgatttttttttttaaacaaactttccctgggaaatgggaaatggctggctgtacttggtgagctcggaggtaggtcaaatacaaccacataagtggggccttgtgtgtaaccatgtaaaaggtcaagtaatgacaattcgttgaggatggggcttgagctccaactgttttgtcctttcagtggcttccaggctgctaatttttgctgtgatgcaggttgctggttttcagggttgtagtagagctagggaggaaggtatgaaaataatacaaattaaaaggccacaaagaatgttgttcttaccaagattcagctatcttgtttttagtttttaaacaaatactccccagatttctgcaagcttttggtttaatttccagagttctgacaaagtttattgtgacaattttttgctagtgttctcattggtttttatgtaggaagaatttcagaggtccttattctgccatttcactaatattacccTGATCATTGATTTTATTTT-----CATTTATTTATTtaatgtatagaacaagatgacagtatcaggaaggaaactgtatacttgaacactataaaacaactagaacagacacaagatatttcaatctacaaaagaagaatacacaatcttaagtgtatatgaaatattctccaggacagaccatatgttagttaggccatgaagtctcaataaatgtgaaatggctgaaatcatacaaagtacattctgcaaccacaaaagaacagaattagaagtcagtaacagaaggaaaactggaaaattctcaaaacgtggaaattaaacaacatac
s panTro4.chr15              80177994 2521 +  99548318 ttgagttcaggggtttgagaccagcctggccaacatggcgaaaccttgtctctaactaaaaataccaaaaaaattagccgggcatggtgatgggtacctggtatcccagctactcaggaggctgagggaggagaactgcttgaacccaggagctgaggggttacagtgacccgagatggcaccactgcactccaacctgggtgacacagggagactccgtctcaaaaaaaaaaaaaaaaaaaaagctagttctcagcacatgcgctaagcaaataacttaaaaatacatagtaaaagaggccaggcatagtagctcatgcctgcaatcccagcactttgggaagccaaggtgggaagatcacttaaggccaggagtttgacaccagcctgggtgatagagcaagactttgtctctttaaaaaaA-CAAGAAAcatatatataagaatgacaaggaaattaaagagacaaggaaattaaa-----------------atgtcataggattttataccagaaaatatcttaacacaaaagaaagcagtaatggaagaatagggagaaaagacacaagacatatggaaaacaaacagaaaaatggcaggtgtatatcttatcagtaattatattaaatgtagatggatcaaacccttgaataaatgacacactgacagaatggactttttaaaagcatgatccaaatatatactgcacaacaggagatacactttaagactcaaagacacaaatagggctgggcacggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattacccaggtgtggtggtgtgtgcctgtagtctcagctactcgggaggctgagacaggagaattgcttgaactgggaggcagaggttgcagtgagccaagatcacaccactgcactccagtctggatgacagagcgagactcaagtctcaaggaaaaaaacaaagacacaaaagacacaaataggttgaaaggatggaaaaaagtatatcctgcaaataataaccaaatgagaggtagaataactgtacctattaccagacaaaacagacattaagacaaaaattgttactagagataaaggaggacattttataataaaagggttaatctatcaaaaaaa-tttaacaattataaacaccaatgaacctaacacagaccaccaaaatatatgcaacaaaaactgacagaaatgataggagaaacagatacttcaacagtaacactattgttggaaacatcaatagcgcactttcagcaatgatggacagaaactgccttacatgcttagaactagtaagtttcccagtctttgacaaggggcccagtatgccctccacactgagccagacagtttacaactctgcagtattcttgtattcttcacttcctgtttgtacagagcctcaaggttaaccaggagagagagcttagggccttctaatctaatgctttctttcaagcaggcaggttagcctagattcccaggaatatattgagttttttataaagcctcatatttaattccccagccttttaagcttttttggttagcctgttgagttcctaaactgttgcctaatgcctcaggcacctgggatatttaataattgcctctgatttttttttt-aaacaaactttccctgggaaatgggaaatggctggctgtacttggtgagctcggaggtaggtcaaatacaaccacgtaagtggggccttgtgtgtaaccatgtaaaaggtcaagtaacgacaattcgttgaggatggggcttgagctccaactgttttgtcctttcagtggcttccaggctgctaatttttgctgtgatgcaggttgctggttttcagggttgtagtagagctagggaggaaggtatgaaaataatacaaattaaaaggccactaagaatgttgttcttaccaagattcagctatcttgtttttattttttaaacaaatactctccagatttctgcaagcttttggtttaatttccagagttctgacaaagtttattgtgacaattttttgctagtgttctcattggtttttatgtaggaagaatttcagaggtccttattctgccatttcactaatattacccTGATCACTGATTTTATTTTATTTTCATTTATTTATTtaatgtatagaacaagatgacagtatcaggaaggaaactgtatacttgaacactataaaccaactagaacagacacaagatatttcaatcaacaaaagaagaatacacaatcttaagtgtatatgaaatattctccaggacagaccatatgttagttaggccatgaagtctcaataaatgtgaaatggctgaaatcatacaaagtacattctgcaaccacaaaagaacagaattagaagtcagtaacagaaggaatactggaaaattctcaaaacgtggaaattaaacaacatac
i panTro4.chr15             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e ponAbe2.chr15_random       10189084 6287 +  10928107 I

a score=402059.000000
s hg38.chr15_KI270850v1_alt    398185 1518 +    430880 tcttcatcaatggatcgaagaagaaatcacagggcaatgagaaaatactttgagataaagaaacacaccatactaaaacttacggcatgcaatgaaaataatacttggaaagttgtaaaatcctatgttaaagattatgctgaatgtcgtagctcacacctgtaatcccagaactttaggaggctgaggtaggaggatcacttgagcccaggagtttgagacagcccaggcaacatagtgagagaccctgcctctacaaaaaaaatataaattagctaggcatggtggtgcacaactgtagtcccagctgctcaagaggctgaggtgggaggattgtttgagcctgggaggtcgcggctgcagtgagctgtgatcacgccactgcactccagcctgggcaacagagcgagagcctgtctcagaaaaaaaaaaataataacaatagtaattaaatatcaataacctaacattctacctaaagaaactagaaaaaataaacacaaagcaagtagaggaagcaacaaagattaaagtcg----aaataatgtctagaaaaactataaaaaaaaaaaacagaagttggttctttgaaaaacatctgcaaaactgataaaccttgagctagattaaccaagaagaaatgaaagtgggtacaatactaccaaccttacagaaa-gtaaaaaagaatataaattactatgggctggctgcaatggctcatgcctgtaatcccagcactttgggaggctgaagtgggtggatcacctgaggttgggagtttgagatcagcccaatcaacatagaaaaactccgtctctactaaaaatacaaaattagccaggcatggtggcgcatgcctgtaatatcagctacttgggaggctgaggcgggagaatcgcttgaacctgggaggtggaggttgcggtgagccgagatcaccccactgcactccagcctaggcaacaagagcaaacctccgtggc-------------aaaaaaaaaaaaaaaaaattactatgaataattatatgcctgcaaattagaaaacataggtgaaataaattctacagccagaaattaccaaaactaactcaaagaaacagacaatctgcatacgcttttaatgaacaaaaagcctgtattagtcatcaacaaacttcccagagaatagtccaagacaagaaagcttcgctggtgaattctaccaaaaacctaaaaaagaataaataccaattattcacatgtacttttccaaaaagcagacgaggagggaacactttacaactcagtcatgaagcaagtatttccctgataccaaaatcaggcagagaccacaagaaaacaaaatcatagacctatctgtttattaatctaaatgcagtggcatctaagatggattacacactatgaccaaatggggtttatcctaagaagacaaggttggttcattataagaaaaaaaa----tcaataaaatataatattaatagaacaaaagt---aaaaaaaaatcacatgatcatctcaatggacacaga
s panTro4.chr15              80180515 1533 +  99548318 tcttcatcaatggatcgaagaagaaatcacagggcaatgagaaaatactttgagataaagaaacacaccatactaaaacttacggcatgcaatgaaaataatacttggaaagttgtaaaatcctatgttaaagattatgccaaatgtcgtagctcacacctgtaatcccagaactttaggaggctgaggtaggaggatcacttgagcccaggagtttgagacagcccaggcaacatagtgagaggccccgcctctacaaaaaaaacataaattagctaggcatggtggtgcacaactgtagtcccagctgctgaagaggctgaggtgggaggattgtttgagcctgggaggtcgcggctgcagtgagctgtgatcacgccactgcactccagcctgggcaacagagcgagagcctgtctcagaaaaaaaaaaaaaataacaatagtaattaaatatcaataacctaacattctacctaaagaaactagaaaaaataaacacaaagcaagcagaggaagcaacaaagattaaagtcg----aaataatgtctagaaaaactattaaaaaaaaa--cagaagttggttctttgaaaaacatctgcaaaactgataaaccttgagctagattaaccaagaagaaatgaaagtgggtacaatactaccaaccttacagaaa-gaaaaaaagaatataaattactatgggctggctgcaatggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggttgggagttcgagatcagcccaaccaacatggaaaaactccgtctctactaaaaatacaaaattagccaggcatggtggcgcatgcctgtaatatcagctacttgggaggctgaggcgggagaatcgcttgaacctgggaggtggaggttgcggtgagccgagatcgccccactgcactccagcctaggcaacaagagcaaaactccgtggccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattactatgaataattatatgcctgcaaattagaaaagataggtgaaataaattctacagccagaaattaccaaaactaactcaaagaaacagacaagctgcatacgcttttaatgaacaaaaagcctgtattagtcatcaacaaacttcccagagaatagtccaagacaagaaagcttcgctggtgaattctaccaaaaacctaaaaaagaataaataccaattattcacatgtactttttcaaaaagcagatgagaagggaacactttacaactcagtcatgaagcacgcatttccctgataccaaaatcaggcagagaccacaagaaaacaaaatcatagacctatctgtttattaatctaaatgcagtggcatctaagatggattacacactatgaccaaatggggtttatcctaagaagacaaggttggttcattataagaaaaaaaaaaaatcaataaaatatattattaatagaacaaaagt---aaaaaaaaatcacatgatcatctcaatggacacaga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10195371 1526 +  10928107 TCTTCatcaatggatcaaagaagaaatcacgggggaatgagaaaatactttgagataaagaaacacaccatactaaaacttacggcatgcaatgaaaataatacttggaaagttgtaaaatcctacgttaaagattatgccaaatgtcgtaactcacacctgtaatcccagaactttaggaggctgaggtaggaggatcacttgagcccaggagtttgagacagcgcaggcaacatagtgagagacctcgcctctacaaaaaaaatataaattagctaggcatggtggtgcacaactgcagtctcagctgctcaggaggctgcagtgggaggattgcttgagcctgggaggtcgcggctgcagtgagttgtgatcacgccactgcactccagcctgggcaacagagcgagagcctgtctcaaaaaaataataataataacaatagtaattaaaaatcaataacctaacattctacctaaagaaactagaaaaaataaacataaagcaagtaga-gaagcaacaaagattaaagtcgaaataaataatgtctagaaaaactattaaaaaaaaaaacagaagttggttctttgaaaaa-atctgcaaaactgataaaccttgagctagattaaccaagaagaaatgaaagtgggtacaatactaccaaccttacagaaaggaaaaaaagaatataaatgactatgggctggctgcaatggctcatgcctgtaatcccagcactttgagaggctgaggcaggtggatcacctgaggttgggagttcgagatcagcctaatcaacatgaaaaaactccgtctccactaaaaatacaaaattagccaggcatggaggcgcatgcctgtaatatcagctacttgggaggctgaggcgggagaatcacttgaacctgggaggcggaagttgcggtgagccgagatcgccccactgcattccagcctaggcaacaagagcaaaactccgtggc-------------aaaaaaaaaaaaaaaaaattactatgaataattatatgcctgcaaattagaaaacataggtgaagtaaatcctacagccagaaattaccaaaactaactcaaagaaacagacaatctgcatacacttttaatgaacaaaaagcctgtattagtcatcaacaaacttcccagagaatagtccaagacaagaaagcttcgctggtgaattctaccgaaaacctaaaaaagaataaataccaattattcacatgtacttttccaaaaagcagacgaggagggaacactttacaattcagtcatgaagcaagtatctccctgataccaaaatcaggcagagaccacaagaaaagaaaatcatagacctatctgtttattaatctaaatgcagtggcatctaagatggattacatactatgaccaaatggggtttatcctaagaagacaaggttggttcattataagaaaaaaaa--aatcaataaaatataatattaatagaacaaaagtaaaaaaaaaaaatcacatgatcatctcaatggacacaga
i ponAbe2.chr15_random      I 6287 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e nomLeu3.chr6               17261729 6890 - 121039945 I

a score=26370.000000
s hg38.chr15_KI270850v1_alt    399703 54 +    430880 caagtatttgatgaaaatccaataccctttcatgataaaaatattcaataaact
s panTro4.chr15              80182048 54 +  99548318 caagtatctgatgaaaatccaatacccttttatgataaaaatattcaataaact
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10196897 54 +  10928107 caactatttgatgaaaatccaataccctttcatgataaaaatattcaataaact
i ponAbe2.chr15_random      C 0 C 0
s calJac3.chr6               22300375 54 + 158406734 caagtactttatgaaaatccaatatccttgcatgataaaaacattcaataaact
i calJac3.chr6              I 1245 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I
e nomLeu3.chr6               17261729 6890 - 121039945 I

a score=575801.000000
s hg38.chr15_KI270850v1_alt    399757 822 +    430880 aggaatagaaaaaaacat------cctcaggccgggcccggtcactcacgcctgtaatcccagcactttgggaggccaaggccggtggatcacctgaggtcaggagttggagtccaggctgaccaacatcatgaaatcccatctctactaaaaatacaaaaattagcctggcatggtggcgcacacctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgtagtgagccaagatcacgccactg-cacttcagccttgggg-acagagtgagactccagtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaagaaaaaaaaatcctcaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaatgaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagccagcacaattaggaaggaaaatgaaacaaaaggcatctagatggaaaaa-aaagtaaaactatctttatagatgatacacccagaaggcatgatcttagatgt-aaaaaatcctaagaaatcac----acacacaaaaatccatgtacaaaaaccagctctatttctatacactagcaatgaacaatctgaaaataaaatt---aacagtttgacttacaatagcatgaaaaataaatatacttatgaataaattgcaagacttggacactgaaaactgtaagaaatcactgaaataaattaaaacaaaaaaaatccccaattcatgcattagaagacttaatattgttaagatggcaataGT
s panTro4.chr15              80182102 812 +  99548318 aggaatagaaaaaaacat------cctcaggccgggcccggtcactcacgcctgtaatcccagcactttgggaggccaaggccggtggatcacctgaggtcaggagttcgagtccagcctgaccaacatcatgaaatcccatctctactaaaaatacaaaaattagcctggcatggtggcacgcacctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgtagtgagccaagatcatgccactg-cacttcagccttgggg-acagagtgagactccagtctcaaaaaaaaaaaaaaaaagaaaagaaaaaaa-gaaaaaaa-------aaatcctcaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaatgaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagccagcacaattaggaaggaaaatgaaacaaaaggcatctagatggaaaaa-aaagtaaaactatctttatagatgatacacccagaaggcatgatcttagatgt-aaaaaatcctaagaaatcac----acacacaaaaatccatgtacaaaaaccagctctatttctatacactagcaatgaacaatctgaaaataaaatt---aacagtttgacttacaatagcatgaaaaataaatatacttatgaataaattgcaagacttggacactgaaaactataagaaatcactgaaataaattaaaacaaaaaa--tccccaattcatgcattagaagacttaatattgttaagatggcaataGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10196951 789 +  10928107 aggaatagaaaaaaacat------cctcaggccgggcccggtcactcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagtccagcctgaccaacatgatgaaaccccatctctactaaaaatacaaaaattagcctggcatggtggtgcgcacctgtaatcccagctactctggaggctgaggcacgagaattgcttgaacccgggaggcagaggttgcaatgagccaagatcacgccactgccacttcagcctggggg-ataaagtgagactccagtctcaaaaaaaaaaaaaaa-------------------------------aaatactcaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaaagaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagccagcacaattaggaaggaaaatgaaacaaaaggcatctagatggaaaaa-aaagtaaaactatctttatagatgatacacccagaaggcatgatcttagatgt-aaaaaatcctaagaaatcac----acacacaaaaatccatgtacaaaaaccagctctatttctatacactagcaatgaacaatctcaaaataaaatt---a--agtttgacttacaatagcatgaaaaataaatatacttatgaataaattgcaa-acttggacactgaaaactgtaagaaatcactgaaataaattaaaacaaaagacatccccaattcatgcattagaagacttaatactgttaagatggcaataGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17268619 799 - 121039945 agaaagaaaaaagaatataaattactatgggctggctgcgatggctcatgcctgtaataccagcactttgggaggctgaggcgggtggatcagctgaggttgggagttcgagatcagcccaaccaacatggaaaaactccatctctactaaaaatac-aaaattagccaggcatggtggcacatgcctataatatcagctactccggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagtcaagatcatgccactg-cacttcagcctgggggcacagagtgagactccagtctcaaaaaaaaaaaaaaaaa-----------------------------aaaTccccaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaaagaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagctagcacaattaggaaggaaaatgaaacaaacggcatctagatggaaaaa-aaggtaaaactatctttgtagatgatacacccagaaggcatgatcttggatgt-aaaaaatcctaagaaatcacaaatacacacaaacatctatgtacaaaaaccagctctatttcta-acactagcaatgaacaatctgaaaataaaatt---aacagtttgacttacaatagcattaaaaataaatatacttaggaataaattgcaagacttgaacactgaaaac--taaaaaatcactgaaataaattaaaac-aaagacatccccgattcatgcattagaagacttaatattgttaagatggcaataGC
i nomLeu3.chr6              I 6890 C 0
s calJac3.chr6               22300429 781 + 158406734 aggaatagaaaaaaa-at------cctt-gaccaggcacggtggctcctatctgtaatcctagcactttgggaagtcaaggt--gaggatcacctaaggtcaagaatttaagtccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaatcagacagacgtggtggcgtgtatctgcaatccctgctactctgtaggctgaggcaggagaactgcttgaactcgggaggcagaggttgcagtgagccgagattgcgccactg------cagcctggcca-acagagcaaaactccagtc------aaaagaaagaa-------------------------------acatcttcaacttggtaaccggctcctacaaaaacacccacatctaacatcatatttaatggtgaaagacaaagtttttggaaacaagacaagatgtctgctctcttcgcttttattcaaaactgtactaaagattttacccagcacaattaggtaggaaaatgaaacagaaggcatctagatgaaaaaacaaaacaaaacta------tagatgatacacccagaaagcatgatcttggatgtgaaaaaatcctaagaaatcac----acacac------------------accagctatatttctatacactagcaatgaacaacctgaaaatgaaattgagaacagtttcacttgcagtagcatcaaaaataaatatgcttatgaataaattgaaagacgtgtacactgaaaattttaagtaatcactgaaagaaatt-aaataagagacaaccttgattcatgcattagaagacttaatattgttaagatggcaataGT
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103231310 8857 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=239658.000000
s hg38.chr15_KI270850v1_alt    400579 223 +    430880 Aggccaggcacagtggctcatgcttataatctcaacgctttgggaggctgaggcaggaggaccctttgagaccaggagttcaagaccagcctggccaacatagcaagaccccatctctacaaaaaaata----aaaata-aaaattagccagcagccacggtggcacacacctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagaAAT
s panTro4.chr15              80182914 215 +  99548318 Aggccaggcacagtggctcatgcttataatctcaacgctttgggaggctgaggcaggaggaccctttgaggccaggagttcaagaccagcctggccaa--------gaccccatctctacaaaaaaata----aaaata-aaaattagccagcagccacagtggcacacacctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagagat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10197740 223 +  10928107 Aggccaggcacagtggctcatgcttataatctcaacgctttgggaggctgaagcaggaggaccttttgaggccaggagttcaagaccagcctggccaacatagcaagaccccatctctacaaaaaaata----aaaata-aaaattagccagcagtcaaggtggcacatgcctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagagAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17269418 226 - 121039945 Aggccaggcagagtggctcatgcttataatctcaacgctttgggaggctgaggcaggaggaccctttgaagccaggagttcaagaccagcctggccaacacagcaagaccccatctcta-aaaaaaataaaataaaata-aaagttggccagcagccacggtggcacacgcctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagagat
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              103240167 214 - 162156779 aggccaggcacagtggctcacacctgtaatcccagcactttgggaggctgaggtgggcagatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaactccgtctctac-------ta----aaaatacgaaattagc---caggtatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggc
i papAnu2.chr7              I 8857 I 53
s calJac3.chr6               22301210 212 + 158406734 Aggccaggcacagtggttcatgcttataatctcaacactctgggaggccgaggtaggagggccctttgaggccaggagttcaagaccagcctggccaacatgacaaggccccatctctagaaaaaaata----aaaata-aaaattagc---cagccatagtggcacatgcctgcagtccctgctactcaagaggctgaggcaggaggatcacttgagAT--------
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=51673.000000
s hg38.chr15_KI270850v1_alt    400802 85 +    430880 CACGTCTCAAaaaa----------aagaaaaccccaaaaaacaaaaacacgatgatctaataattttcatctcaataagttt--aaaaaaaacacac
s panTro4.chr15              80183129 85 +  99548318 cgTGTCTCAAaaaa----------aagaaaaccccaaaaaacaaaaacacaatgatctaataattttcatctcattaagttt--aaaaaaaacacac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10197963 90 +  10928107 CACGTCTCAAAAaa-----aaaagaagaaaaccccaaaaaacaaaaatacaatgatctaataattttcatctcaataagttt--aaaaaaaaaaaac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17269644 89 - 121039945 cgCGTCTCAAAGAAAAAaaaaaaaaagaaaaccccaaaaaaca--------atgatttaataattttcatctcagtaagtttaaaaaaaaaaaacac
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22301422 78 + 158406734 CACATCTCAAACAA-------------AAAAACCCCaaaaacaaaaatacaatgatttaataattttcatctcagtaagttt--aaaaaacac----
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e papAnu2.chr7              103240381 53 - 162156779 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=134908.000000
s hg38.chr15_KI270850v1_alt    400887 159 +    430880 agtaaa---tcaaacccaaagaaaacaataggaaaaa-aaataaatgacacataaaagaaatgtataacagaatcgggggagggagggatcaaagccaaaagtttatt---ttaaaaaaaagattagtaacacagac---aaaAAAAAGCAAACGTAATGTTAAGAAAT
s panTro4.chr15              80183214 157 +  99548318 agtaaa---tcaaacccaaagaaaacaataggaaaaa-aaaaaa--gacacataaaagaaatgtataacagaatcgggggagggggggatcaaagccaaaagtttatt---taaaaaaaaagatcagtaacacagac---aaaAAAAAGCAAACGTAATGTTAAGAAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10198053 150 +  10928107 agtaaa---tcaaacccaaagaaaacaataggaaaaa-aaaat---gacacataaaagaaatgtgtaacagaat-----gggagggggatcaaagccaaaagtttatt---tttaaaaaaagattagcaacacagac----aaaAAAAGCAAACGTAATGTTAAGAAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17269733 154 - 121039945 agtaaa---tcaaacccaaagaaaacaataggaaaaa-aaataaatgacacataaaagaaatgtgtaacagaat-------ggggggagtcaaagccaaaagtttatt-aaaaaaaaaaaagattagtaaCACAGAC---AAAAAAAAGCAAATGTAATGTTAAGAAAT
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              103240434 136 - 162156779 agtgaaattccatctccaaaaaaaa----------------------------aaaagacatgtgtaatagaaa-gaatgagggggggATCAAAGccaaaagcttatttaaaaaaaaaaaagattagtaacACAGAC----TAAAAAAGCAAACTTAATGTTAAGAAAT
i papAnu2.chr7              I 53 C 0
s calJac3.chr6               22301500 157 + 158406734 agtaaa---ttaaaaccaaagaaagcaataggaaaaataaataaatgacacataaaagcaatgtatagtagaat------agggtgggattgaagccaaaagcttatt---ttaaaaaaaagattagtaagaCAGACCAAAAAAAAAAGCAAATTTAATGTCAAGAAAT
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=95129.000000
s hg38.chr15_KI270850v1_alt    401046 123 +    430880 ACTGGAAATTTtgtaatcccagcactttgggaagccgaggtgggcagatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctccactaaaaaaaaa--tacaaaaa
s panTro4.chr15              80183371 125 +  99548318 ACTGGAAATTTtgtaatcccagcactttgggaagccgaggtgggcagatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctccattaaaaaaaaaaatACAAAaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10198203 123 +  10928107 ACTGGAAATTTtgtaatcccagcactttgggaagccgaggtgggcagatcatgaggtcaggagatgaagaccatcctggctaacacagtgaaaccccgtctccactaaaaaaaaa-atac-aaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17269887 122 - 121039945 ACTGGAAACTTtgtaatcccagcactttgggaagccaaggtggggggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctccactaaaaaaaaa--tac-aaaa
i nomLeu3.chr6              C 0 C 0
s papAnu2.chr7              103240570 121 - 162156779 ACTGGAaattttgtaatcccagcacttttggaggccgaggcaggtgaatcgcaagatcaggagatcaagaccatcctggctaacacagtgaaatcccatctctactaaaaaaa----tacaaaaa
i papAnu2.chr7              C 0 I 146
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22301657   0 + 158406734 C
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=5556.000000
s hg38.chr15_KI270850v1_alt    401169 6 +    430880 aATAAG
s panTro4.chr15              80183496 6 +  99548318 aataag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10198326 6 +  10928107 aatAAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17270009 6 - 121039945 aatAAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108472862 6 - 171882078 aaaaaa
i macFas5.chr7              I 9271 C 0
s papAnu2.chr7              103240837 6 - 162156779 aaaaaa
i papAnu2.chr7              I 146 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22301657 0 + 158406734 C
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e rheMac3.chr7              106730951 9456 - 170124641 I

a score=18459.000000
s hg38.chr15_KI270850v1_alt    401175 11 +    430880 ATAAAATAAAA-----
s panTro4.chr15              80183502 16 +  99548318 ataaaataaaataaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10198332 16 +  10928107 ATAAAATAAAATAAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17270015 11 - 121039945 ATAAAATAAAA-----
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106740407 11 - 170124641 ataaaataaat-----
i rheMac3.chr7              I 9456 C 0
s macFas5.chr7              108472868 11 - 171882078 ataaaataaat-----
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103240843 11 - 162156779 ataaaataaat-----
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21163187 11 -  24206276 ataaaataaat-----
i chlSab2.chr29             I 9866 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22301657  0 + 158406734 C
e canFam3.chr3               54455682 18935 +  91889043 I

a score=2074870.000000
s hg38.chr15_KI270850v1_alt    401186 766 +    430880 ACTGGAAATTCTAAAACATCAGAAGAAGCTTTTACataaacatttatgccaatgaatttgaaaatttaaatgaaacagagaaattcctagaaaaacacaacttagcaaaacttagaagacggaatagaaatttgagccaggtgcggtggctcatgcctataatcccagcactttggaaagctgaggcgggtggattgcctgaggtcaggagttcgagaccagcctgcctaacatggtgaaaccccatctctactaaaaatacaaaaattagccagccatggtggagcacccctg-------tagtcccagctacttgggaggctgaggcaggagaatcgcttgagcccgggaggcagaggttgtagtgagctgagatcacactattgcattccagcctgggtaacagagcgagagtctgtccaa---------aaaaaaaaaaacaaaaaaaaaaacacagaaatttgaataattgtattttaaaaactgggtcaggcaaggtggctcacacctg-taatcccagcactttgggagtccaaggc--gggtgggtcatgaggtcagaagttcaagatcagcctggccaagatggtgaaaccccatctctattaaaaa-tacaaaaattagctgggca-ggtggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggggg-cggaggttgcagtaagccaagactgcaccactgcactccagcctgggcaacatagtgagactctgtctc-aaaaaaaaGaaca
s panTro4.chr15              80183518 763 +  99548318 ACTGGAAATTCTaaaacatcagaagaagcttttacataaacatttatgccaatgaatttgaaaatttaaatgaaacaga--aattcctagaaaaacacaacttagcaaaacttagaagacggaatagaaatttgagccaggtgcggtggctcatgcctataatcccagcactttggaaagctgaggcgggtggattgcctgaggtcaggagttcgagaccagcctggctaacatggtgaaaccccatctctactaaaaatacaaaaattagccagccatggtggagtacccctg-------cagtcccagctacttgg-aggctgaggcaggagaatcgcttgagcccgggaggcagaggttgtagtgagctgagatcatactattgcattccagcctgggtaacagagcgagagtctgtccaa---------aaaaaaaaaaa--aaaaaaaacacacagaaatttgaataattgtattttaaaaactgggtcaggcaaggtggctcacacctg-taatcccagcactttgggagtccaaggc--gggtgggtcatgaggtcagaagttcaagatcagcctggccaagatggtgaaaccccatctctactaaaaaatacaaaaattagctgggca-ggtggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggggggcggaggttgcagtaagccaagactgcaccactgcactccagcctgggcaacatagtgagactctgtctc-aaaaaaaagaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10198348 753 +  10928107 ACTGGAAATTCTAAAACATCAGAAGAAGCTTTTACataaacatttatgccaatgaatttgaaaatttaaatgaaatggag-aattcctagaaaaacacaacttagcaaaacttagaagatggaatagaaatttgagccaggtgtggtggctcatgcctataatcccagcactttggaaagttgaggcgggtggattgcctgaggtcaggagttcaagaccagcctggctaacaaggtgaaaccccatctctactaaaaatacaaaaattagccagccatggtggagcacccctg-------tagtcccagctacttaggaggctgaggcaggagaatcgcttgagcccaggaggcagaggttgcagtgagctgagatcatactattgcattccagcctgggtgacagagcgagagtctgtccaa---------aaaaaaaaaaa------------cacagaaatttggataattatattttaaaaactgggtcaggcaaggtggctcacacctg-taatcccagcactttgagagtccaaggc--gggtggatcatgaggtcaggagttcaagatcagcctggccaagatggtgaacccccatctctactaaaaa-tacaaaaattagctgggca-ggtggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctaggggg-tggaggttgcagtaagccaagactgcaccattgcactccagcctgggcaacacagtgagactctgtctc-aaaaaaaaaaaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17270026 759 - 121039945 GCTGAAAATTCTaaaacatcagaagaagcttttacataaacatttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaaacttagaagacggaatagaaTTTTGAGAcgggtgcggtggctcatgcctataatcccagcactttggaaagctgaagcgggcggattgcctgaggtcaggagttcgagaccagcctggctaacatggtgaaaccccatctctactaaaagtacaaaaattagccagccatggtggagcacccctg-------tagtcccagctacttgggaggctgaggcaggagaatctcttgatcccaggaggcagaggatacagtgagctgagatcatactattgcactccatcctgggtgacagagcgagagtctgtccct---------gaaaaaaaaaa-------aaaaCCACAGAAATTTGGATAATTGTATTGTAAAAACTGggtcaggcatggtggctcacacctgttaatcccagcactttgggagtccaaggc--gggtggatcatgaggtcaggagttcaagatcagcctggccaa-atggtgaaaccccatctctactaaaca-tacaaaaattagctgggca-ggtggcaggtgcttgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctggggga-tggaggttgcagtaagccaagactgtaccactgcactccagcctgggcaacacaataagactctgtctc-aaaaaaaagaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106740418 756 - 170124641 actggaaattctaaaacatcagaagaagcttttacataaacttttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaaacttagaagaagaaatagaaattcgagccaggtgcagaggctcacgcctataaccctagcactctgggaggctgaggtgggcagattacctgaggtcaagagttcgagaccagcctggctaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggagcacccctg-------tagtcccagctacttgggaggcagaggcaggagaatcgcttgagcccaggaggcagcggttgcagtgagctgagatcacactactgcactccagcctgggcgatagagtgagagtctgtcttt-----------aaaaaaaaa--aaaaaaaagacacagaaatttggataattgtgttttaaaaactgggccaggcatggtggctcacacctg-taatcccagcactttgggagtccaaggt--gggtggatcatgaggtcaggagttcaagatcagtatggccaagatggtgaaactccatctctactaaaaa-tacaaaaattagccaggtgtggtggcaggctcctgtaatcccagctactcgggctgctgaggcaggagaatcgcttgagcccaggagg-cagcggttgcagtgagctgagatcacactactgcactccagcctgggcaatacagggagactctgtctc-aaaaaa-------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108472879 753 - 171882078 actggaaattctaaaacatcagaagaagcttttacataaacttttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaaacttagaagaagaaatagaaattcgagccaggtgcagaggctcacgcctataaccccagcactctgggaggctgaggtgggcagattacctgaggtcaagagttcgagaccagcctggctaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggagcacccctg-------tagtcccagctacttgggaggcagaggcaggagaatcgcttgagcccaggaggcagaggttgcagtgagctgagatcacactactgcactccagcctgggcgacagagtgagagtctgtcttt--------------aaaaaa--aaaaaaaagacacagaaatttggataattgtgttttaaaaactgggccaggcatggtggctcacacctg-taatcccagcactttgggagtccaaggt--gggtggatcatgaggtcaggagttcaagatcagtatggccaagatggtgaaactccatctctactaaaaa-tacaaaaattagccaggtgtggtggcaggttcctgtaatcccagctactcgggctgctgaggcaggagaatcgcttgaacctgggggg-cggaggttacagtaagccaagactgtaccactgcactccagcctgggcaatacagtgagactctgtctc-aaaaaa-------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103240854 768 - 162156779 actggaaATTCTAAAACATCAGAAGCAGCTTTTACACAAACTTTTATGccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaACTTAGCAAAActtagaagaagaaatagaaattcgagccaggtgcagaggctcatgcctataaccccagcactctgggaggctgaggtgggcagattacctgaggtcaagagttcgagaccagcctggctaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggagcacccctg-------tagtcccagctatttgggaggcagaggcaggagaatcgcttgagcccaggaggcagaggttgcagtgagctgagatcacactactgcactccagcctgggcgacagagtgagagtctgtctttaaaaaaaaaaaaaaaaaaaa--aaaaaaaagacacagaaatttggataattgtgttttaaaaactgggccaggcatggtggctcacacctg-taatcccagcactttgggagtccaaggt--gggtggatcatgaggtcaggagttcaagatcagtatggccaagatggtgaaactccatctctactaaaaa-tacaaaaattagccaggtgtggtggcaggctcctgtaatcccagctactcgggctgctgaggcaggagaatcacttgaacctgggggg-cggaggttgcagtaagccaagactgtaccactgcactccagcctgggcaacacagtgagactctgtctcaaaaaaa-------
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21163198 756 -  24206276 actggaaattctaaaacatcagaagaagcttttacataaacttttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaaacttagaagaagaaatagaaattcgagccaggtgcagaggctcatgcctataaccccagcactctgggaggctgaggtgggcagattacctgaggtcagcagttcgagaccagcctggctaacatggtgaaatcccatttctactaaaaatacaaaaattagccaggcgtggtggagca-ccctg-------tagtcccagctacttgggaggcagaggcaggagaatcgcttgagcccaggaggcagaggttgcagtgagctgagatcacactactgcactccagcctgggcgacagagtgaga----gtcttt------aaaaaaaaaaaaaa--aaaaaaaagacacagaaatttggataattgtgttttaaaaactgggccaggcatggtggctctcacctg-taatcccagcactttgggagtccaaggt--gggtggatcatgaggtcaggagttcaagatcagtatggccaagatggtgaaactccatctctactaaaaa-tacaaaaattagccaggtgtggtggcaggctcctgtaatcccagctactcgggctgctgaggcaggagaatcgcttgaacctgggggg-tggaggttgcagtaagccaagactgtaccactgcactccagcctgggcaacacagtgagactctatctc-aaaaaa-------
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22301657 738 + 158406734 ACTGGAAATTCTAAAACATTAGaagaggcttttacattaacatttatgc--atgaatttgaaaatttaaatgaaacaaagcaattcctagaaaaacacaatttagcaaaacttagaagaagaaacagaaaGCTGggccgagtttggtggctcatgcctataataccagcattttgagaggcagagatgggcagattgcctgaggtcaggagtttgagactagcctggctaatactgtaaaaccccatctctactaaaaacataaaaattaaccaggcgtggtggagcacctctggctaatttagtcccagctacttgggaggccgaagcaagagaatcgcttgaacccaggaggcagaagtttcagttagctgagatcacgccattgtacttcagcctaggcaatagcgtgtgactccatttca---------aaaaaaaaaaa--acaaaatcaaaacagaaaTTTTGATAATTATATTTTTAAAACTGggctgggtgtggaggctcatgcttg-taatcctagcactttaggaggtcaaagttggggaaaatcatgagatcaggagttcaagaccagcctggccaagatggtgaaacccagtccctacaaaaag-tacataaattggccgggtacagtggcccatgcctgtaatcccaga-atttgggaggccgaggcaggtggatcat---------gaggt-caggtgtt---------caaga---------------ccagcctggccaagatggtgaaatcccgtccc-tacaaaaagtaca
i calJac3.chr6              C 0 I 2976
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I

a score=132411.000000
s hg38.chr15_KI270850v1_alt    401952 91 +    430880 aacaaacaaacaaacaaacaaaacaaacaaacaaaaaactgaatccacattttaaaaactgttcctcaa---aaaaacaaaaacaaacaaaaac
s panTro4.chr15              80184281 91 +  99548318 aacaaaccaacaaacaaaacaaaccaacaaacaaaaaactgaatccacattttaaaaactgttcctcaa---aaaaacaaaaacaaacaaaaac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10199101 78 +  10928107 agaaaa--aacaaacaaacaaaa-aaagaaaaaaaaaactgaatctacattttaaaaactgttcctcaa---aa----------aaacaaaaac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17270785 77 - 121039945 aacaaa--caaaaacaaacaaaa------------aAACTGAATCCACATTTTAAAAACTGTTCCTCAA---AAAAACAAAAACAAACAAAAAC
i nomLeu3.chr6              C 0 I 3050
s rheMac3.chr7              106741174 72 - 170124641 ---aacccaaaaaacaaaacaaa------------aaactgaatccacattttaaaaactcttcctcaa---aaaaacaa----aaacaaaaac
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108473632 72 - 171882078 ---aacccaaaaaacaaaacaaa------------aaactgaatccacattttaaaaactcttcctcaa---aaaaacaa----aaacaaaaac
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103241622 72 - 162156779 ---aacccaaaaaacaaaacaaa------------aaactgaatccacattttaaaaactcttcctcaa---aaaaacaa----aaacaaaaac
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21163954 75 -  24206276 ---aacccaaaaaacaaaacaaa------------aaactgaatccacattttaaaaactgttcctcaaaacaaaaacaa----aaacaaaaac
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I

a score=149239.000000
s hg38.chr15_KI270850v1_alt    402043 79 +    430880 acactccaggcccaagtggcttcagcaatgaattatatcaaaatttaaggaagactattataaatttcacacaagctct
s panTro4.chr15              80184372 79 +  99548318 acactccaggcccaagtggcttcagcaatgaattatatcaaaatttaaggaagactattataaatttcacacaagctct
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10199179 79 +  10928107 acactccaggcccaggtggcttcagcaatgaattatatcaaaatttaaggaagactattataaatttcacacaagctct
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106741246 79 - 170124641 acactccaggcccagatggcttcagcaatgaattataccaaaatttaagaaagactattataaatttcacacaagctct
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108473704 79 - 171882078 acactccaggcccagatggcttcagcaatgaattataccaaaatttaagaaagactattataaattgcacacaagctct
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103241694 79 - 162156779 acactccaggcccagatggcttcagCAATGAATTATACCAAAATTTAAGAAAGACTATTATAAATTTCACACAAGCTCT
i papAnu2.chr7              C 0 I 310
s chlSab2.chr29              21164029 79 -  24206276 acactccaggcccagatggcttcagcaatgaattataccaaaatttaagaaagactattataaatttcacacaagctct
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=553041.000000
s hg38.chr15_KI270850v1_alt    402122 343 +    430880 tctcaagaacagcga--gg---aaaaaaaaaaacttttcaagaagctaatgatttgcttcaagaagctaacgactctgacaccagggatattttaaggaaagaaaattacaagcttatctcttatgtgcatgaatacaaaaatcctgaagacaacatttacaaatgaaatccaaacaatatactaaataaaatatattatgaacaacttgagttaattccaggaatgcgaagttggctttactttggtattctttcctgaatgttattcctacatctatagaataaaggagaaaggttaaatgaatagatgcagaaaagctgatataatttaataacattcatgat--TT
s panTro4.chr15              80184451 342 +  99548318 tctcaagaacagcga--gg---aaaaaaaaaa-cttttcaagaagctaatgatttgcttcaagaagctaacgactctgacaccagggatattttaaggaaagaaaattacaagcttatctcttatgtgcatgaatacaaaaatcctgaagacaacatttacaaatgaaatccaaacaatatactaaataaaatatattatgaacaacttgagttaattccaggaatgcgaagttggctttactctggtattctttcctgaatgttattcctacatctatagaataaaggagaaaggttaaatgaatagatgcagaaaagctgatataatttagtaacattcatgat--TT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10199258 345 +  10928107 tctcaggaacagcgagggg---aaaaaaaaaaacttttcaaaaagctaatgatttgcttcaagaagctaacgactctgacaccagggatattttaaggaaagaaaattacaagcttatctcttacgtgcatgaatacaaaaatcctgaagacaacatttacaaacaaaatccaaacaatatactaaataaaatatattatgaacaatttgagttaattccaggaatgtgaagttggctttactctggtattctttcctgaatgttattcctacatctatagaataaaggagaaaagttaaatgaatagatgcagaaaaactgatataattcaataacattcatgat--tt
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106741325 338 - 170124641 tcccaacaacaggtg--ggaaaaaaaaaaaaaacctt-----aagctaatgatttgcttcaagaagctaacaactctgacaccaggaatattttaaggaaggaaaattacaagcttatctcttatgtgcatgaacacaaaaatcctaaagataacatttacaaatgaaaaccaaagaatatactaaataacttatattatgaacaacttgagttaattccaggaaagcaaagttggctttactctggtattcttccctgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatgcagaaaa-ctgatataatttaataacattcatgat----
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108473783 338 - 171882078 tcccaacaacaggtg--ggaaaaaaaaaaaaaacctt-----aagctaatgatttgcttcaagaagctaacaactctgacaccaggaatattttaaggaaggaaaattacaagcttatctcttatgtgcatgaacacaaaaatcctaaagataacatttacaaacgaaaaccaaagaatatactaaataacttatattatgaacaacttgagttaattccaggaaagcaaagttggctttactctggtattcttccctgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatgcagaaaa-ctgatataatttaataacattcatgat----
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103242083 329 - 162156779 tctcaaaa-----------aaaaaaaaaaaaaacctt-----aagctAATGATTTGCTTCAAGAAGCTAACAACTCTGACACCAGGAATATTTTAAGGAAGGAAAATTACAAGCTTATCTCTTAAGTGCATGAACACAAAAATCCTAAAGATAACATTTACAAACGAAAACCAAAGAATATACTAAATAACTTATATTATGAACAACTTGAGTTAATTCCAGGAAAGCAAAGTTGGCTTTACTCTGGTATTCTTCCCTAAATGTTATTCCTACATCTATAGAATACAGGAGAAAAGTTAaatgaatagatgcagaaaa-ttgatataatttaataacattcatgat----
i papAnu2.chr7              I 310 C 0
s chlSab2.chr29              21164108 324 -  24206276 tcccaacaacagggg--gg-----aaaaaaaaacctt-----aagctaatgatttgcttcaagaagctaacaactctgacaccaggaatattttaaggaaggaaaattacaagcttatctcttatatgcatgaacacaaaaatcctaaagataacatttacaaacgaaaaccaaagaatatactaaataacttatattatgaacaacttgagttaattccaggaaagcaaagt-----------tggtattcttccctgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatacagaaaa-ctgatataatttaataacattcatgaatt--
i chlSab2.chr29             C 0 I 11
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=-3800.000000
s hg38.chr15_KI270850v1_alt    402465 33 +    430880 TATGTTTGTTTTCTTGGGGGtttttttgttttg
s panTro4.chr15              80184793 33 +  99548318 TATGTTTGTTTTCTTGGGGttttttttgttttg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10199603 25 +  10928107 tatgtttgtttttttg-----ttttttg---ta
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106741663  8 - 170124641 -----ttattatt--------------------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108474121 11 - 171882078 --ttattattatt--------------------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103242412 10 - 162156779 ---tattattttt--------------------
i papAnu2.chr7              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e chlSab2.chr29              21164432 11 -  24206276 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=479315.000000
s hg38.chr15_KI270850v1_alt    402498 252 +    430880 -ttttgtttttttggagacagtgtctggctgtgtcacccaggctggagtgcagcggcacgatcttggctcactgcaatctccacctcctgagctcaagcgatc--ctcccacctcagccccaagtaactgggactacaggtacgtgccaccacacccggcttttcatacttttgtacagatggggtttcactacattgcccaggctggtctctaa----------------------ccacctcaacctccccaagtgctgggattatagacatgag
s panTro4.chr15              80184826 273 +  99548318 -ttttgtttttt-ggagacagtgtctggctgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaatctccacctcctgagctccagcgatc--ctcccacctcagccccaagtaactgggactacaggtacgtgccaccacacccggcttttcatacttttgtacagatggggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgaccacctcaacctccccaagtgctgggattatagacatgag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10199628 273 +  10928107 -ttttgttttt--ggagacagtgtctggctgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaatctccgcctcctgagctcaagcaatcctctcccacctcagccccaagtaact-ggactacaggtacgtgagaccacacccggcttttcatacttttgtacagatggggtttcactacattgtccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctccccaagtgctgggattatagacatgag
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106741671 274 - 170124641 tttttctttttt-ggagacagtgtctggctctgtcacccaggctagagtgcagtggcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatc--ctcccatctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccagcctggtctctaagtcctgggatcaagtgatcttcccacctcaacctcccaaagtgctgggattatagacatgag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108474132 274 - 171882078 tttttctttttt-ggagacagtgtctggctctgtcacccaggctagagtgcagtggcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatc--ctcccatctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacatgag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103242422 274 - 162156779 tttttctttttt-ggagacagtgtctggctctgtcacccaggctagagtgcagtggcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatc--ctcccatctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacatgag
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21164443 274 -  24206276 tttttctttttt-ggagacagtgtctggctctgtcacccaggctagagtgcagtggcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatc--ctcccacctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacatgag
i chlSab2.chr29             I 11 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=1045455.000000
s hg38.chr15_KI270850v1_alt    402750 509 +    430880 ccactgcatcctgcAGA---TTTTCTTTTTTTAAAAGCCTCTTGGCAAAGTCTGAAAAGAACTTTCTTAATCAGAT-AAAAAACATTC---ACAACTTCAGCATATTTAAAGGAGAAATGCTAAGAAGTTCACTCACAACCCCTCCCCTAAGACTGGAAACAAGC--TCCCCCCG-----GGGAGAGAGACACTCACCCTGGATGGGAGCCTGGAACTCTACCACCCCGCCCCGCTCCCCCCTCAATgcccccctgggacagcccgggaggctgccaggaagggactggcctccttgggaggctcccaggatcctcttcagcctcgctgcttctgagtccctgccggcaagcctccgccaagcagtggccttgctgatgcctggggaagcccaccgggagagagacacacaccctgggtgggaccctggggctctaagactccctaccctgggacggccccaggggctgctggaaagggactggcctcctcgggaggctcccagcgtcctcttcgTCACTCCT------------------
s panTro4.chr15              80185099 508 +  99548318 ccactgcatcctgcAGA---TTTTCTTTTTTTAAAAGCCTCTTGGCAAAGTCTGAAAAGAACTTTCTTAATCAGAT-AAAAAACATTC---ACAACTTCAGCATATTTAAAGGAGAAATGCTAAGAAGTTCACTCACAACCCCTCCCCTAAGACTGGAAACAAGC--Tccccccg-----gggagagagacactcaccctggatgggagcctggaactctaccaccccgccCCGCTCCCCCCTCAACgcccccctgg-acagcccaggaggctgccaggaagggactggcctccttgggaggctcccaggatcctcttcagcctcgctgcttctgagtccctgccggcaagcctccgccaagcggtggccttgctgatgcctggggaagcccaccgggagagagatacacaccctgggtgggaccctggggctctaagaccccctaccctgggacggccccaggggctgctggaaagggactggcctcctcgggaggctcccagcgtcctcttcgtcactcct------------------
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10199901 504 +  10928107 ccactgcatcctgcaca---ttttc---ttttaaaagcctctcggcaaagtctgaaaagaactttcttaatcagat-aaaaaacattcacaacaacttcagcGTATTTAAAGAAGAAATGCTAAGAAGTTCACTCACAACCCCTCTCCTAAGACTGGAAACAAGG--TCCcccc------aggagagagacattcaccctggatgggagcctggaactctacgaccccaccccacccccccccaaa----cccctgggacagctcaggaggctgccaggaagggactggcctccttgtgaggctcccaggatcctcttcggcctcgctgcttctgagtccctgccggcacgcctccgccaagcggtggccttgccgacgcctggggaagccaaccgggagagagacacacaccctgggtgggaccctggggctctaagaccccctaccctgggacggccccaggggctgctggaaaggaactggcctcctcgggaggctcccagtgtcctcttcgTCACTCTT------------------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17273912 504 - 121039945 CCACTGCATCCTGCAGA---TTTTCTTTTTTTAAAAGCCTCTTGGCAAAGTCTGAAAAGAACTTTTTTAATCAGAT-AAAAAACATTCGCAAAAACTTCAGCATATTTAAAGGAGAAATGCTGAGAAGTTCACTCACAACCCCTCCCCTAAGACTGGAAACAAgt--cccccac------gggagagagacactcaccctggatgagagcctggaactctacgaccccactccccccgccccc----gccccccagg-acagccccggaggctgccaggaagggactggcctccttgggaggctaccaggatcctcttcggcctcgctgcttctgagtccctgccggcacgcctccgccaaccggtggccttgccgacgcctggggaagcccaccgggagagagacacacaccctgggtggga-cctggggctctaagaccccctaccc-ggaacggcccgaggggctgctggaaagggactggcctccttgggaggctcccagcATCCTCTTCGTCACTCTT------------------
i nomLeu3.chr6              I 3050 C 0
s rheMac3.chr7              106741945 492 - 170124641 ccactgcaccctgcaaa-----ttttttttttt-aagcctcttggcaaagtctgaaaataactttcttaatcagat-aaaaaacattcacaaaaacttcagcatatttaaaggagaaatgctgagaagttcactaatagcccctcccctaagactagaaacaagTCCCCCCCCCAACCccgggaaaaagacacacaccctgcatgggagcctggaactctacgacac-----------------------cgccagg-atagccctggaggctgctgggaagtgactggcctccttgggaggctcccagtgtcctcttcggcctcgctgcttctgagtccctgctggcatgcctctgccacctggtggccttgctgccacctgggaaagccctccaggagagagacatgcaccctgggtgggagcctggggctctaagaccccccaccccggaacagccccgggggctgctgggaagggactagcctccttgggaggctcccagcgacctctttggccCTCTT------------------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108474406 494 - 171882078 ccactgcaccctgcaaa---ttttttttttttt-aagcctcttggcaaagtctgaaaataactttcttaatcagat-aaaaaacattcacaaaaacttcagcatatttaaaggagaaatgctgaGAAGTTCACTAATAGCCCCTCCCCTAAGACTGGAAACAAGTCCCCCCCCCAACCccgggaaaaagacatacaccctgcatgggagcctggaactctacgaccc-----------------------cgccagg-atagccctggaggctgctgggaagtgactggtctccttgggaggctcccagtgtcctcttcagcctcgctgcttctgagtccctgctggcatgcctctgccacctggtggccttgctgccacctgggaaagccctccaggagagagacatgcaccctgggtgggagcctggggctctaagaccccccaccccggaacagccccgggggctgctgggaagggactagcctccttgggaggctcccagcGACCTCTTTGGCCCTCTT------------------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103242696 493 - 162156779 ccactgcaccctgcaaa---tttttttttttttaaagcctcttGGCAAAGTCTGAAAATAACTTTCTTAATCAGAT-AAAAAACATTCACAAAAACTTCAGcatatttaaaggagaaatgcTGAGAAGTTCACTAATAGCCCCTCCCCTAACACTGGAAACAAGT--cccccccAACCCCGGGAAAAAGACACACACCCTGCATGGGAGCCTGGAACTCTACGACCC-----------------------CGCCGGG-ATAGCCCTGGAGGCTGCTGGGAAGTGACTGGCCTCCTTGGGAGGCTCCCAGTGTCCTCTTCGGCCTCGCTGCTTCTGAGTCCCTGCTGGCATGCCTCTGCCACCTGGTGGCCTTGCTGCCACCTGGGAAAGCCCTCCAGGAGAGAGACATGCACCCTGGGTGGGAGCCTGGGGCTCTAAGACCCCCCACCCCGGAACAGCCCCGGGGGCTGCTGGGAAGGCACTAGCCTCCTTGGGAGGCTCCCAGCGACCTCTTTGGCCCTCTT------------------
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21164717 511 -  24206276 ccactgcaccctgcaaaaaaaatttttttttta-aagcctcttggcaaagtctgaaaataactttctcaatcagataaaaaaacattcacaaaaactt---catatttaaaggagaaatgctgaGAAGTTCACTAATAGCCCCTCCCCTAAGACTGGAAACAAGT--GCCCCCCAACCccgggaaaaagacacacaccctgcatgggagcctggaactctacgacac-----------------------ccccagg-atagccctggagggtgctgggaagtgactggcctccttgggaggctcccagtgtcctcttcagcctcgctgcttctgagtccctgctggcatgcctctgccacctggtggacttgctgccacctgggaaagccctctaggagagagacatgcaccccgggtgggagcctggggctctaagaccccccaccccggaacagccccaggggctgttgggaagggactggcctccttgggaggctcccagcgacctctttggccCTCTTAACCATACAAAAATATAC
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e canFam3.chr3               54455682 18935 +  91889043 I

a score=3339285.000000
s hg38.chr15_KI270850v1_alt    403259 1201 +    430880 AACCACATAAAAATAT---------------gggtcttgctcccaggctggagtgcagcagcattatcacagctcactgaagcctcgaactcctgggctcaagtgaccctctcaccttaacctcccaaag---------tgctgggattacaggcacgagccactgcacccagctgtaatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtataactgattaaaatatacaggtgttttatgcaagtttccatatattctatgtttaacaatttggaaaagtCCATCAAACTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCACTAAAAATTACTGAAGTCTAAATAAATACTGATTGTGAACACAT--ACATACACACAAAACTGCAAGTAAATTCCTAGATATTATCAGTACCAAATGT-GGG------GGGGAGTACAATTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAAAAGATCTTTAaaaaaaagaaa-------gaaagaaacgaaacgaaacCCAAGGATATTTAAGACCTAGTCCTTACACATTCTTCAAGAGACTTACAGTATAAACAGAAAACCTAGT----TCAACTCTTTA---AAATATAAgtgtgtgtgtgtgt--gtgtgtgtgtgtgtgtgtATATATATATATGACCTCAGCCAACGCTCTCACAACTGCATCTTTATATACCCACACTATCACAATCACTATCaccatttagtaagtgcagttatgtgcatcattgtagatagtattcaatacaaatcttatttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtctaaagaggaaatttaaactcagagtgtaagccaaggtcacagcaagtaagtagcacgaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTGTTTGGGTTTATTATGAAACGGACAA----TG-TTTTTTCAAAACTGTACCCTATCCTCCCATTTTAAGAA--TGTATATGTTTACACCACCACATGATGGATCCACAAATAAACACGAAGAGCCAAGAAGGACCTTGCTTCATCTCACAGATTGACAGACTACAGAACATTGGAGGCAGGACAGTGTTAT
s panTro4.chr15              80185607 1208 +  99548318 AACCACATAAAAATAT---------------gggtcttgctcccaggctggagtgcagcagcattatcacagctcactgcagcctcgaactcctgggctcaagtgaccctctcaccttaacctcccaaag---------tgctgggattacaggcacgagccactgcacccagcTgtaatattctatttcttgacccgggtagtggttatgtgggtgtctgctgtataactgattaaaatatacaggtgttttatgcaagtttccatatattctatgtttaacaatttggaaaagtCCACCAAACTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCACTAAAATTTACTGAAGTCTAAATAAATACTGATTGTGAACACAT--ACATACACACAAAACTGCAAGTAAATTCCTAGATATTATCAGTACCAAATGTCGGG------GGGGAGTACAGTTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAAAAGATCTTTAAAAAAAAGAAA-------GAAAGAAAAGAAAAGAAACCCAAGGATATTTAAGACCTAGTCCTTACATATTCTTCAAGAGACTTACAGTATAAACAGAAAACCTAGT----TCAACTCTTTA---AAATATAAGTGTGTGCGTGTGTTTGTGTGTGtatatatatatatatatatatatGACCTCAGCCAATGCTCTCACAACTGCATCTTTATATACCCACACTATCACAATCACTATCaccatttagtaagtgcagttatgtgcatcattgtagatagtattcaatacaaatcttatttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtctaaagaggaaatttaaactcaaagtgtaagccaaggtcacagcaagtaagtagcacgaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTCTTTGGGTTTATTATGAAACGGACAAACAATG-TTTTTTCAAAACTGTACCCTATCCTCCCATTTTAAGAA--TGTATATGTTTACAACACTACATGATGGATCCACAAATAAACACGAAGAGCCAAGAAGGACCTTGCTTCATCTCACGGATTGACAGACTACAGAACATTGGAGGCAGGACAGTGTTAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10200405 1196 +  10928107 AACCATACAAAAATAT---------------gggtcttgctcccaggctggagtgcagcagcattatcatagctcactgaagcctcgaattcctgggctccagtgaccctcccaccttaacctcccaaag---------tgctgggattactggcatgagccactgcacccagcTgtaatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtgtaactgattaaaatatacaggtgttttatgcaagtttccatatattctatgtttaacaattcggaaaagTCCATCAAACTAGTCCAAGAATTAAACAAAACACGATGATAATCTAAGTACTCAGTAAAAATTACTGAAGTCTAAATAAATACCGATTGTGAACACAT--ACACACACACAAAACTGCAAGTAAATTCCTAGATATTATCAGTACCAAATGT-GGGGGGGGTGGGGAGTACAATTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCACTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAAAAGATCTTTaaaaaaaaaaaaaaaaaagaaaagaaaagaaacaaaaCCcaaggatgtttaagacctagtccttacatattcttcaagagacttacagtctaAACAGAAAACCTAGT----TCAACTCTTTA---AAATATAAATGTGTGTGTGTGT------------------------ATATATATGACCTCAGCCAATGCTCTCACAACTGCATCTTTATATACCCACACTATCACAATCACCAccaccatttagtaagtgcagttatgtgcatccttgtagatagtattcaatacaaatcttatttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtcgaaagaggaaatttaaactcagagtgtaagccaaggtcacagcaagtaagtagcacgaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTGTTTGGGTTTATTATGAAACGGACAAACAATG-TTTTTTCAAAACTGTACCCTATCCTCCCATTTTAAGAA--TGTATACGTTTACAACACCACATGATGGATCCACAAATAAACACAAAGAGCCAAGAAGGACCTTGCTTCATCTCACAGATTGACAGACTACAGAATATTGGAGGCAGGACAGTGTTGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17274416 1178 - 121039945 AACCATATAAAAATAT---------------gggtcttgctcccaggctggagtgcagcagcattatcatagctcactgaagcctcaaactcctgggctcaaatgaccctcccaccttaatctcccaaag---------tgctgggattacaggcatgagccactgcacccagcTgtaatattctgtttcttga-ctgggtagtggttatgtgggtgtctgctgtataactgattaaaatatacaggtgttttattcaagtttccatatattctatgtttaacaatttggaaaagtCCATCAAACTAGTCCAAGAATT-----AAACACAAGGATAATCTAAGTAATCAGTAAAAATTACTGAAATCTAAATAAATACCGATTGTGTACACAT--ACACACACACAAAACTGCAAGTAAATTCCTAGATATTATCAGTACCAAATGT-GGAGG----GGGGAGTACAATTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCAGTTTGAGAGAATGTATTCATTAAGCCATTGTATAATGTTACGTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAATTATTTCAAAAGATCTTT-aaaaaaagaaa-------gaaagaaaagaaacgaaaCCCACGGACATTTAAGACCTAGTCCTTACATATTCTTCAAGAGACTTACAGTCTAAACAGAAAACCTGGT----TCAACTCTTTA---AAATATAAATGTGTGTGTGTAT------------------------ACATGTATGACCTCAGCCAATGCTCTCACAACTGCATCTTTATATACCCACACTATCACAATCACTATCACCATTTAGTAAGTGCAGTTCTATGCATCATTGTAGATAGTATTCAATACAAatcttatttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtctaaagaggaaatttaaactcagagtgtaagccaaggtcacagcaagtaagtagcacgaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTGTTTGGGTTTATTATGAAATGGACAAACAATG-TTTTTTCAAAACTGTACCCTATCGTCCCGTTTTAAGAA--TGTATATGTTTACAACACCACATGATGGATCCACAAATAAACAGGAAGAGCCAAGAAGGACCTTGCTTCATCTCACGGATTGACAGACTACGGAACATTGGAGGCAGGACAGTGTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106742437 1175 - 170124641 AACCATATAAAAATAT---------------Aggtcttgctcccaggttgcagtacagcagcatgatcatagctcactgaagcctcgaactcctggg-----------ctcccaccttaacctctcaaag---------tgctgggattacaggcatgagccactgcactcATCTgtaatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtataactgattaaagtatacaggtg-tttatgcaagtttccatatattctatgtttaacaatttggaaaagtccattaaaCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGCAAGTAAATTCCTAGATATTATCAGTACCGAATGT-GG-------GGGGAGTACAATTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCATGGATTTCAGAAGACCTTT-----AAAAAAA-------AAAAGAAAAGAAACGAAACCCAAGGATATTTAAGACCTAGTCTTTACATATTTTTCAAAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATACAAATGTGTGTGTGTGT------GTGTATATACATATATATACACACATGACCTCAGCCAATGCTCTCACAACTGCATCTATATATATCCACACTAT-ACAATCACCATCaccatttagtaagtgcagttatgtgcaccattgtagattgtattcaatacaaaccttatttaagtttcacaaaactcccacaaatgggtactattactacctatctgtctaaagatgaaatt-------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcaggtcatctgcattcagagcctgtaccctacctttgtttggGTTTATTATGAAATGGACGAACAATGTTTTTTTCAAAACTGTACCCTATCCTCCCATTTTAAGAATATATATATGTTTACAACACCACACGATGGATCCACAAATAAACAGAAAGAGCCAAGAAGGACCTTGCTTTATTTCAC-GATTGACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108474900 1173 - 171882078 AACCATATAAAAATAT---------------Aggtcttgctcccaggttgcagtacagcagcatgatcatagctcactgaagcctcgaactcctggg-----------ctcccaccttaacctctcaaag---------tgctgggattacaggcatgagccactgcactcatctgtaatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtataactgattaaagtatacaggtg-tttatgcaagtttccatatattctatatttaacaatttggaaaagtccattaaaCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGCAAGTAAATTCCTAGATATTATCAGTACCGAATGT-GG-------GGGGAGTACAATTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAGAAGACCTTT---AAAAAAAAA-------AAAAGAAACGAAACGAAACCCAAGGATATTTAAGACCTAGTCTTTACATATTTTTCAAAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATACAAATATGTGTGTGTGT------GTGTATATACATATATATACACACATGACCTCAGCCAATGCTCTCACAACTGCATCTATATATACCCACACTAT-ACAATCACCATCaccatttagtaagtgcagttatgtgcaccattgtagattgtattcaatacaaaccttatttaagtttcacaaaactcccacaaatgggtactattactacctatctgtctaaagatgaaatt-------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcaggtcatctgcattcagagcctgtaccctacctttgtttggGTTTATTATGAAATGGACGAACAATGTTTTTTTCAAAACTGTACCCTATCCTCCCATTTTAAG----TATATATGTTTACAACACCACATGATGGATCCACAAATAAACAGAAAGAGCCAAGAAGGACCTTGCTTTATTTCAC-GATTGACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103243189 1169 - 162156779 AACCATATAAAAATAT---------------AGGTCTTGCTCCCAGGTTGCAGTAcagcagcatgatcatagctcactaaagcctcgaactcctggg-----------ctcccaccttaacctctcaaag---------tgctgggattacaggcatgagccactgcactcagctgtaatattctatttcttgacctgggTAGTGGTTATGTGGGTGTCTGCTGTATAACTGATTAAAGTATACAGGTG-TTTATGCAAGTTTCCATATATTCTATGTTTAACAATTTGGAAAAGTCCATTAAACTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCattgtgtacacat--acacatatacaaaactGCAAGTAAATTCCTAGATATTATCAGTACCGAATGT-GG-------GGGGAGTACAATTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTTGAGAGAATGTATTCATTGAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAgaagaccttt---------aaa-------aaaaaaaaagaaatgaaacccaaGGATATTTAAGACCTAgtctttacatatttttcaaaagacttACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---Aaatacaagtgtgtgtgtgtgt------gtgtgtgt--atatatatatacacatgaccTCAGCCAATGCTCTCACAACTGCATCTATATATACCCACACTAT-ACAATCACCATCACCATTTAGTAAGTGCAGTTATGTGCACCACTGTAGATTGTATTCAATACAAACCTTATTTAAGTTTCACAAAACTCCCACAAATGGGTACTATTACTACCTATCTGTCTAAAGACGAAATT-------------TAAGCCAAGGTCACAGCAAGTAAGTAGCACAACCAGAATTTGTTCTCAGGTCATCTGCATTCAGAGCCTGTACCCTACCTTTGTTTGGGTTTATTATGAAATGGACAAACAATGtttttttCAAAACTGTACCCTATCCTCccattttaagaatatatatatgtttacaacACCACATGATGGATccacaaataaacagaaagagcCAAGAAGGACCTTGCTTTATTTCAC-GATTGACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21165228 1145 -  24206276 AACCATATAAAAATAT---------------Aggtcttgctcccaggttgcagtgcagcggcatgatcatagctcactgaagcctcaaactcctggg-----------ctcccaccttaacctcccaaag---------tgctgggattacaggtatgagccactgcactcagctgtaatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtataactgattaaagtatacaggtg-tttatgcaagtttccatatattctatgtttaacaatttggaaaagtCCATCAAGCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGCAAGTAAATTCCTAGATATTATCAGTACCAAATGT-GG-------GGGGAGTACAATTTGAACACAAAATGAGGGCCTTTTTCAGCTCAGGCATCCAGTTTGAGAGAATGTATTCATTAAGC--------AATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCGAGGATTTCAGAAGACCTTTaaaaaaaaaaaa-------aaaagaaaagaaacgaaaCCCAAGGTTATTTAAGACCTAGTCTTTACATATTTTTCAAAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATAC----------GTGTGT------GTGTATAT--------------ACATGACCTCAGCCAATGCTCTCACAACTGCATCTATATATACCCACACTAT-ACAATCACCATCaccatttagtaagtgcagttatgtgcaccattgtagattgtattcaatacaaaccttatttaagtttcacaaaactcccacaaatgggtactattactacctatgtgtctaaagacgaaatt-------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcagatcatctgcattcagagcatgtaccctACCTTTGTATGGGTTTATTATGAAATGGACGAAC---GTTTTTTTTAAAACTGTACCCTATCCTCCCATTTTAAGAATATATATATGTTTACAACACCACATGATGGATCCACAAATAAACAGAAAGAGCCAAGAAGGACCTTGCTTTATTTCAC-GATTGACACACTATAGAACATGGGAAGCAGGACAGTGTGAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22305371 1230 + 158406734 AACCATATAAACATATGGttttttacagacagggtcttgctcttaaactggagtatagcagcatcatcatagctcactgaagcctccaactcctggactcaagggttctttccaccttaacctcccaaagagctgggattactgggattacaggcatgagccactgtaccctgcTgtaatattctattttttgacctaggtagtggttatgtgggtgtctgctgaataactgattaaaacatactggtgttttattcaagtttccatatattctatatttaacaatttggaaatCTCCAGCAAACTAGTCCAAGAATTAATAAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTAAAGTCTAAATAAACAATGACTGTGTACACATACACACACACACAAAACTGCAAGTAAATTCCTAGATATTATCAGTACCAAATGT-TG-------AGGGAGTACAATTTGAACATAAAATGAGGGCCTTTTTCAGCTTAGGGACCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTCACATAATATGCACAAGACCCAACAGTGAGGACTGGAAATCCAAGGATTTCAAAAGATCTTTaaaaaaaaaaaaaaaaaaaaaaggaaaTGAAATGAAACTCAAGGATATTTAAGACCCAGTCCTTACATATTCTTT--GAGACTTTCAGTCTAAACAGAAAACCTAGT----TCAACTCTTAATGTAAGTATATATTtgtgtgtgtgt----gtgtgtgtgtgtgtgtgtgtgtgtgtATAACCTTAG-TAATGCTCTCACAACTTCATCTTTATATACCCACACTAACACAATCGCTatcaccatttagtaagtacagttatgtgcatcattttaagtattattcaatacaaatattatttaaacttcacaaaacccctacaaatgggtactattactacctatatgtctaaagaggaaatttaaactcagagtgtaagccaaggtcacagcaagtaagcagcacaaccagaatttgttctcaggtcatctacatccagagcctgtaccctACCTTTGTGTGGGTTTATTATGAAATGGACAAACAATG--TTTTTCAAAACTATATCCTATCTTCCCATTTTAAGAA--TGTATATGCTTACAACACCACATGGTGGAACCAC----AAACAGGAAGAGTCAAGAAGGACCTTGCTTCATCTCATGGATTGGCAGATTACAGAACACAGGAGGCAGGACAGTGTGAA
i calJac3.chr6              I 2976 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I

a score=2463112.000000
s hg38.chr15_KI270850v1_alt    404460 730 +    430880 AAAGTTTCTGAAGTGACAACCAAGCCAACTTTGAATAAAATAAT--TTTTTCTAGGAAGAC--AG---TCAATTTAGT----TG---------TCAACTATGTAGCAGAAGAGCATTCATTGCACAACTTCATCT--GTCAGTGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaagggaaagaaccctgggacaca-attctagaaacttactctgggttgatgccagatcatATATGCTACACGTATTATTTTAACTTCAGAAAATATTTTATAATATAAAGAAAACAAAATC-AAGTTGGATTTACAGCTATATC-AACTGGaattttgaagtatgacaacatctagagtctacatggaatgtgactgaaaa-------ctcatgaaatcctagcaggattataaactggt-aaatgcactttgaaaaagtacccagcaacttgaagtgtgaagacaatat--accaaactctgcaattaacttctaggtacatactc-aaggaagctcttgtgatgtgggcac-aggagacttaaacaaggatgttcaccaaaatactgtttataatagcaaaaa-atatat--------atttacctaaatacagcaaaaaatatacacctaaacatttacca--agaggaatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtattgattttacttacaaataactatcaatatgtacacattataaatat---gacacatgg-ag
s panTro4.chr15              80186815 728 +  99548318 AAAGTTTCTGAAGTGACAACCAAACCAACTTTGAATAAAATAAT--TTTTTCTAGGAAGAC--AG---TCAATTTAGT----TG---------TCAATTATGTAGCAGAAGAGCATTCATTGCACAACTTCATCT--GTCAGTGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggg-aagaaccctgggacaca-attctagaaacttactctgggttgatgccagatcatATATGCTACACGTATTATTTTAACTTCAGAAAATATTTTATAATATAAAGAAAACAAAATC-AAGTTGGATTTACAGCTATATC-AACTGGaattttgaagtatgacaatatctagagtctacatggaacgtgactgaaaa-------ctcatgaaatcctagcaggattataaactggt-aaatgcactttgaaaaagta-tcagcaacttgaagcgtgaagacaatat--accaaactctgcaattaacttctaggtacatactc-aaggaagctcttgtgatgtgggcac-aggagacataaacaaggatgttcaccaaaatactgtttataatagcaaaaa-atatat--------atttacctaaatacagcaaaaaatatacacctaaacatttacca--agaggaatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtattgattttacttacaaataactatcaatatgtacacattgtaaatat---gacacatgg-aa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10201601 732 +  10928107 AACGTTTCTGAAGTGACAACCAAGCCAACTTTGAATAAAATAAT--TTTTTCTAGGAAGAC--AG---TCAATTTAGT----TG---------TCAACTATGCAGCAGAAGAGCATTCATTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGCAGATAGAATGGCATAAAGAAAAAGAACCCTGGGACACA-ATTCTAGAAACTTACTCTGGGTTGATGCCAGATCATATATGCTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATC-AAGCTGGATTTACAGCTATATC-AACTGGaattttgaagtatgacaatacctagagtctacatggaatgtgactgaaaa-------ctcatgaaatcctagcaggattataaactggt-aaatgcactttgaaaaagtacccagcaacttgaagtatgaagacggtat--accaaactctgcaattaacttctaggtacatactc-aaggaagctcttgtgatgtgggcac-aggagacataaacaaggatgttcaccaaaatactgtttataataacaaaaa-aTATAT--------ATTTACCTAAATACTGCAAAAAATATATACCTAAACATTTACCA--AGAGGAATATTGTATATATTTATGTAAAATATTACTAC---AAAGCAACTAAAATGTATTGATTTTACTTACAAATAACTATCAATATGTACACATTATAAATAT---CATACATGG-AA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17275594 730 - 121039945 AAAGTTTCTGAAGTGACAACCAAGCCAACCTTGAATAAAATAAT--TTTTTCTAGGAAGAC--AG---TCAATTTAGT----TG---------TCAACTATGTAGCAGAAAAGCATTCATTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaacttactctgggttgatgccagatcatATATGCTACACGTGTTATTTTAACTTCAGAAAATATTTTATAATATAAAGAAAACAAAATC-AAGTTGGATTTACAGCTATATC-AACTGGaattttgaagtatgacaatatctagagtctacatggaatgtgcctgaaaa-------ctcatgaaatcctagcaggattataaactggt-aaatgcactttgaaaaagtacccagcaacttgaagtgtgaagacagtac--accaaactctgcaattaacttctaggtacatactc-aaggaagctcttgtgatgtgggaac-aggaggcataaacaaggatgttcaccaaaatactgtttataacagcaaaaa-atatat--------atttacctaaatacagcaaaaaatatatacctaaacatttacca--agaggaatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtattgattttacttacaaataactatcaatatgtacacattataa--at---gatacatgg-aa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106743612 740 - 170124641 AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAATAAAAGAA---TTCTTCCAGGAAGAC--AG---TCAATTTAGT----TG---------TCAACTATGTAGCAGAAGAGCATTCGTTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaactttctctgggttgatgccagatcatATATGCTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAGCTGTATC-AACTGGaattttgaagtatgacaatacctagagtctacaaggaatgtgactgaaaa-------ctcatgaaatcctagcaggattataaactggt-aaacgcactttgaaaaagtacccagcaacttgaagtgtgaagacagtat--accaaactcggcaattaacttctaggtacatactc-aaggaagctcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atatatacttaaagatttgcctaaatacagcaaaaaatacatacctaaccatttacca--agagggatattgtatatagttatgtaaaatattactac---aaagcaattaaaatgtactgattttactcacaaataactatcaatatgtacacattataaatag---gatacatgg-aa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108476073 740 - 171882078 AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAATAAAAGAA---TTCTTCCAGGAAGAC--AG---TCAATTTAGT----TG---------TCAACTATGTAGCAGAAGAGCATTCGTTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaactttctctgggttgatgccagatcatATATGCTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAGCTGTATC-AACTGGaattttgaagtatgacaatacctagagtctacaaggaatgtgactgaaaa-------ctcatgaaatcctagcaggattataaactggt-aaacgcactttgaaaaagtacccagcaacttgaagtgtgaagacagtat--accaaactcggcaattaacttctaggtacatactc-aaggaagctcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atatatacttaaagatttgcctaaatacagcaaaaaatacatacctaaccatttacca--agagggatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtactgattttactcacaaataactatcaatatgtacacattataaatag---gatacatgg-aa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103244358 740 - 162156779 AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAATAAAAGAA---TTCTTCCAGGAAGAC--AG---TCAATTTAGT----TG---------TCAACTATGTAGCAGAAGAGCATTCGTTGCACAACTTCATCTAAGTCaatgattttaattatataatatgcaTGGAATGTCAAGAA--ACAGCAGACAGAATAGCATAAAGGAAAAGAACCCTGGGACACA-ATTCTAGAAACTTTCTCTGGGTTGATGCCAGATCATATATgctacatgtattattttaacttcagaaagcattttataatataaagaaaacaaaatcaaagttgGATTTACAGCTGTATC-AACTGGAATTTTGAAGTATGACAATACCTAGAGTCTACAAGGAATGTGACTGAAAA-------CTCATGAAATCCTAGCAGGATTATAAACTGGT-AAACGCACTTTGAAAAAGTACCCAGCAACTTGAAGTGTGAAGACAGTAT--ACCAAACTCTGCAATTAACTTCTAGGTACATACTC-AAGGAAGCTCTTGTGATGTGTGCAC-AGGAGACATAAACAAGGATGTTCAccaaaatattgtttataatagcaaaaa-atatatacttaaagaTTTGCCTAAATACAGCAAAAAATACATACCTAATCATTTACCA--AGAGGGATACTGtatacatttatgtaaaatattactaC---AAAGCAATTAAAATGTACTGATTTTACTCACAAATAACTATCAATATGTACACATTATAAATAT---GAtacatgg-aa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21166373 741 -  24206276 AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAATAAAAGAA---TTCTTCCAGGAAGAC--AG---TCAATTTAGT----TG---------TCAACTACGTAGTAGAAGAGCATTCATTGCACAACTTCATCTAAGTCAATGGTTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGCAGACAGAATGGCATAAAGCAAAAGAACCCCGGGACACA-ATTCTAGAAACTTTCTCTGGGTTGATGCCAGATCATATATGCTACATGTATTATTTTAACTTCAGAAAGTATTTCATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAACTGTATC-AACTagaattttgaagtatgacaatacctagagtctacaaggaatgtgactgaaaa-------ctcatgaaatcctagcaggattataaactggtaaaacgcactttgaaaaagtacccagcaacttgaagtgtgaagacagtat--accaaactctgcaattaacttctaggtacatactc-aaggaagctcttgtgatgtgtgtac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atatatacttaaagatttgcctaaatacagcaaaaaatatatacctaaccatttacca--agagggatattgtatatatttatgtaaaatattactac---agagcaattaaaatgtactgattttactcacaaataactatcaatatgtacacattataaatat---gatacatgg-aa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22306601 734 + 158406734 AAAGTTTCTGAAGTGACAACCAAGCCAACCGTGAATAAAAGGA---TTTTTCTGGGAAGACAAAG---TCAATTTAGT----TG---------CCAACAATGTAGCAGAAGAGCACTCATTGCATGACTTCATCTAAATCAATGATTTTAATTATATAATACGCATGGAATGTAAAGAA--ACATCAGACAGGATCACATAAAGGATAAGACCCCTGGGACACA-ATT-TAGAAACTTTCTCTGGGTTGATGCCAGATCACATATGCTACATATATTATTTTAACTTCAGAAAGTATTTTACAATATAAAGAAAACAAAATC-AAGTTTGACTTTCAGCTGTATC-AACTGGaattttgaagtatgacaatacctagagtttacaaggaatgtgactgaaaa-------ctcatgaaatcttagcaggattataaactggt-acattcattttgaaaaagtacccagcaacttaaagtgtgaagacagtat--actaaactctgcaattcacttctaggtatatactc-aaggaaactcttgcaatgtgtgcac-aggagacataaacaaggatgttcaccaaaatactgtttataatagcaaaaaTATACATGCCTAAACATTTACCTAAATatagcaaaaaatatatacctaaacacttaccagtagagggatgttatatatatttatgtaaaatattactac---aaagcaattaaaatgtactgattttact----------tatcaatatgtacacattataaatat---gatacatggaaa
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54474617 716 +  91889043 AAATTTTCAGAGATGATAACCAAGCCATTCTTGAAAAAAAGAAGGATTTTTCTAGGCAGAT--AATATTCAATTTAGTATTCTGCTTAACAGTTCAGCTATGTAGCAGAACAGCATTTCCTGCATGATTTCACCTAAGCCAACAATTTTAATTATATAA----AATGGAATCTCAAGAAACACAACAaatggaacaggataa-----aagaaccctgagacccaggttctagagatctttcctaggttgataccagatcATATATGCT-TATGTAGTCTTTGAACTGTAGAAAATATTTCACA--------AAAACAAAATT-AAGTAGGttttacacccaaggctgattggaattttgaattacaataataattggggtctacaa-aaatgtaggggaaaaaaagactctcatgaaatcctggctggattgcaaacagag-aaattcactttgagaaagaagtcagtaacttaa--tttgaagacaatataaaccccattctgcaattcacttctagctacacaggctaaagaaattcttgttacgtgcacataaggagacctaaacaaggatgttcaccaaaatactatttataatagcaaaaa-ata-----------atttacc--aatatagga------------------------tc--agataattattatagatatttttgtaaaatactactactatacagcaattaaaacacactgatttgacttaaaa-----tattaatatggagacatcataaatataaCAATACATAG-Ag
i canFam3.chr3              I 18935 I 4383
e mm10.chr7                  81404089 30523 + 145441459 I

a score=1208174.000000
s hg38.chr15_KI270850v1_alt    405190 410 +    430880 aaaagcaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAATCAGGAGGCGGCATGaggggtcttcttagttgcttatatcattctatttcttgatttgagcttgagagcatgagtgtatttgttttgtgacaatttacccagttatatactttaaactgtgcattttcctcagtgtatgttttatttaca---------taaaaatgtaaaaCGAtgtttatggacatacacagagaagtataaaaacacggatgggaaggaaatataccaacttcaggagagttatctctaggaaaatgaggaaaagagtacacttaagtgcaaaacttttatttgatgtttatattgtctgaataaaggtctgaatcaaacatatcaaaatcttaacatttgtta
s panTro4.chr15              80187543 410 +  99548318 aaaagcaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGAcaatcaggaggcggcatgaggggtcttcttagttgcttatatcattctatttcttgatttgagcttgagagcatgagtgtatttgttttgtgacaatttacccagttatatactttaaactgtgcattttcctcagtgtatgttttatttaca---------taaaaatgtaaaacgatgtttatggacatacacagagaagtataaaaacacggatgggaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaaagagtacacttaagtgcaaaacttttatttgatgtttatattgtctgaataaaggtctgaatcaaacatatcaaaatcttaacatttgtta
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10202333 410 +  10928107 AAAAGCAAATGCCAGGAAGAT-AATGTCATAGTCTTTGCATAAATATTTAAAACATATGACAattaggaggcggcatgaggggtcttcttagttgcttatatcattctatttcttgatttgagcttgagagcatgagtgtatttgttttgtaacaatttacccagttatatacttttaactgtgcattttcctcagtgtatgttttatttaca---------taaaaatgtaaaaCGATGTTTATGGACATACACAAAAAAGTATAAAAACATGGATGGGAAGGAAATACACCAACTTCAGGAGAGTTATCTCTAGGAAAATGAGGAAAAGAGTACACTTAAGTGCAAAATTTTTATTTGATGTTTATATTGTCTGAATAAAGGTCTGAATCAAACACATCAAAATCTTAACATTTGTTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17276324 405 - 121039945 aaaagcaaatgccaggaagataaatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtattcttagttgcttgtatcattctatttcttgatttgagcttgagagcatgagtgtatttgttttgtgacaatttacccagtcatatactt-----tgtgcattttcctcagtgtatgttttatttaca---------taaaaatgtaaaacgatgtttatggacatacacagagaagtataaaaacacagatggaaaggaaatacaccaacttcaggagagttatctctagg-aaatgaggaaaagagtacacttaagtgcaaaatttttatttgatgtttatattgtctgaataaaggtctgaatcaaatatatcaaaatcttaacatttgtta
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106744352 409 - 170124641 aaaagaaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgagagcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttaca---------taaaaaAGTAAAATGAtgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaatgagtacacttaagtgaaaaatttttatttgatttttatattgtctgaataaaggtctgaatcgaacatatcaaaatcttaacttttgtta
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108476813 409 - 171882078 aaaagaaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgagagcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttaca---------taaaaaagtaaaatgatgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaatgagtacacttaagtgaaaaatttttatttgatttttatattgtctgaataaaggtctgaatcgaacatatcaaaatcttaacttttgtta
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103245098 409 - 162156779 aaaagaaaatgccaggaAGAT-AATGTCATATTCTTTGCATAAAGATTTAAAACATATGACAATTAGGAGGGGGCATGAGGGGTCTTCTTAGTTGCTGATATCATTCTATTTCTTGATTTGAGCTTGAGAGCATGAGTGTATTTGTTTTGTGACAATTTACCCAGTTATATACTTT-AATTGTGCattttcctcagtgtatgttttatttaca---------taaaaaagtaaaatgatgttTATGGACATACACACAGAAGTATAAAAACATGGATGGTAAGGAAATACACCAACTTCAGGAGAGTTATCTCtaggaaaatgaggaaatgagtACACTTAagtgaaaaatttttatttgatttttatattgtctGAATAAAGGTCTGAATCGAACATATCAAAATCTTAACTTTTGTTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21167114 409 -  24206276 aaaagaaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgagagcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttaca---------taaaaaagtaaaatgatgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaaagagtacacttaagtgaaaaatttttatttgatttttatattgtctgaataaaggtctgaatcgaacatatcaaaatcttaacttttgtta
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22307335 400 + 158406734 aaaagcaaataccaggaagat-aatgtcatactctttgcctaaagatttaaaacaTATGACAATTAAGAGGGG--CTGaggggtcttcctaggtgctggt---attctatttcttgatttgagctttagagcatgagtgtatttgttttgtgacaatttatccagttatatacttt-aattgtaca-tttCCTCAGTGGATGTTTTATTTACGTTTTACCTTTTTATAGGTAAACTGTTGTTTGTGGACATACACAGAGCAGCATAAAAA-ACAGATGAAAAGGAAATACACCAACTTCAGGAGAGCTATCTCCAGGAAAATGAGGGCAAGAGTATACTTAAGTGTGAAATTTTTATTT--------TACTGTCTGAATAAAGGTCTGAATCGAACGTATCAATATCTTAAC---TGTTA
i calJac3.chr6              C 0 I 234
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=95626.000000
s hg38.chr15_KI270850v1_alt    405600 48 +    430880 aagatcggtggtaaatacatTATTTTACATTCCTCTTTTTAAAttttt----
s panTro4.chr15              80187953 44 +  99548318 aagatcggtggtaaatacattattttacattcctctttttaAA----t----
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10202743 43 +  10928107 AAGATCGGTGGTAGATACATTATTTTACGTTCCTCTTTTTAAA---------
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17276729 44 - 121039945 aagatcggtggtagatacattattttatgttcctctttttaAA----t----
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106744761 48 - 170124641 aagatcagtggtagatacattattttatgttcctctttttaaa----ttttt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108477222 44 - 171882078 aagatcagtggtagatacattattttatgttcctctttttaAA----t----
i macFas5.chr7              C 0 I 652
s papAnu2.chr7              103245507 48 - 162156779 AAGATCAGTGGtagatacattattttatgttcctctttttaaa----ttttt
i papAnu2.chr7              C 0 I 12
s chlSab2.chr29              21167523 48 -  24206276 aagatcagtggtagatacattattttatgttcctctttttaAA----ttttt
i chlSab2.chr29             C 0 I 1
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=32277.000000
s hg38.chr15_KI270850v1_alt    405648 13 +    430880 ttttttttttttt
s panTro4.chr15              80187997 13 +  99548318 ttttttttttttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10202786 12 +  10928107 -tttttttttttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17276773 13 - 121039945 ttttttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106744809 13 - 170124641 ttTTTTTTTTTTT
i rheMac3.chr7              C 0 M 198
s macFas5.chr7              108477918 13 - 171882078 ttttttttttttt
i macFas5.chr7              I 652 C 0
s papAnu2.chr7              103245567 13 - 162156779 ttttttttttttt
i papAnu2.chr7              I 12 C 0
s chlSab2.chr29              21167572 13 -  24206276 ttttttttttttt
i chlSab2.chr29             I 1 I 7
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=91793.000000
s hg38.chr15_KI270850v1_alt    405661 51 +    430880 tgagacggagtttcgttcttgtcatcgcccagactggagtgcagtggcatg
s panTro4.chr15              80188010 51 +  99548318 tgagacggagtttcgctcttgtcatcgcccaggctggagtgcagtggcatg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10202798 51 +  10928107 tgagacggagtttcactcttgtcatcgcccaggctggagtgcagtggcacg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17276786 51 - 121039945 tgagacggagtttcgctcttgtcatcgcccaggctggagtgcagtgacacg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108477931 51 - 171882078 tgagacggagtttcactcttgtcatcacccaggctagagtgcagtggcccg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103245580 51 - 162156779 tgagacggagtttcactcttgtcatcacccaggctggagtgcagtggcctg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21167592 51 -  24206276 tgagatggagtttcactcttgtcgtcacccaggctggagtgcagtggcacg
i chlSab2.chr29             I 7 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I
e rheMac3.chr7              106744822 198 - 170124641 M

a score=5096.000000
s hg38.chr15_KI270850v1_alt    405712 2 +    430880 at
s panTro4.chr15              80188061 2 +  99548318 at
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10202849 2 +  10928107 at
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17276837 2 - 121039945 at
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106745023 2 - 170124641 at
i rheMac3.chr7              M 198 C 0
s macFas5.chr7              108477982 2 - 171882078 at
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103245631 2 - 162156779 at
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21167643 2 -  24206276 at
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=865784.000000
s hg38.chr15_KI270850v1_alt    405714 317 +    430880 ctcagctcactgcagcctccacctcccgggttcaagtgattatcctgcctcagcctcccaagtagctgggattacaggtgcatggcaccacgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtTAAAATTTTTAAAAGC-AAAAAACCCTATAAAAGCAAATATATGCATTTAAATCCTACCATTCAGAGATAACTATGTTTACAAAGGTTaacagctttgagacataactgacatataaactgca----tgtattcaaagtgtagaatttgatatgtttca-acctatgtatac
s panTro4.chr15              80188063 317 +  99548318 ctcagctcactgcagcctccacctcccgggttcaagtgattatcctgcctcagcctcccaagtagttgggattacaggtgcatggcaccacgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtTAAAATTTTTAAAAGC-AAAAAACCCTATAAAAGCAAATATATGCATTTAAATCCTACCATTCAGAGATAACTATGTTTACAAAGGTTaacagctttgagacataactgacatataaactgca----tgtattcaaagtgtagaatttgttatgtttca-acctatgtatac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10202851 317 +  10928107 ctcagctcactgtagcctctacctcccaggttcaagtgattatcctgcctcagcctcccaagtagctgggattacaggtgcatggcaccacgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtTAAAATTTTTAAAAGC-AAAAAACCCTATAAAAGCAAATATATGCATTTAAATCCTACCATTCAGAGATAACTATGTTTGCAAAGGTTaacagctttgagacataactgacatataaactgca----cgtattcaaagtgtagaatttgatttgtttca-acctatgtatac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17276839 311 - 121039945 ctcagctcactgtagcctccacctcccgggttcaagtgattatcctgcctcagcctcccaagcagctgggattacaggtgcacggcaccacgcccggctgatttttgtatttttagtagagtcaggttttcaccatgttggccaggctagtTAAAATTTTTAAAAGC-AAAAAACCCTATAAAAGCGAATATATGCATTTAAATCCTACCATTCAGAGATAACTATGTTTACAAAGGTAaacagctttgagacataactgacacataaactgca----tgtatttaaagtgtagaatttgatatgtttca-acc------tac
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106745025 318 - 170124641 ctcagctcactgcaacctccaccttccgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgtttcaaattTTTAAAAGCAAAAAAACCCTATAAAAGCAAGTATGTGCATTTAAATCCTACCATTCAGAGATAACTATGTTTGTAAAGGTTAAcagctttgagacctaactgacatataaactgca----tgtatttaaagtgcagaatttgatatgtttca-acctatgtatac
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108477984 316 - 171882078 ctcagctcactgcaacctccaccttccgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgTTTCAAATTTTTAAAAGCAAAAAAACTCTATAAAAGCAAGTATGTGCATTTAAATCCTACCATTCAGAGATAACTATGTTTGTAAAGGTTAAcagctttgagacctaactgacatataaactgca----tgtatttaaagtgcagaatttg--atgtttca-acctatgtatac
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103245633 293 - 162156779 ctcagctcactgcaacctccaccttccgggttcaagtgattctcctgcgtcagcctcccaagtagccgggattacagatgcacggcaccatgcccggctaa-ttttgtattttcagtagagacagggtttcaccatgttggccaggctgtttcaaatttttaaaagcaaaaaaaccctATAAAAG------------------------CATTCAGAGATAACTATGTTTGCAAAGGTTAACAGCTTTGAGACCTAACTGACATATAAACTGCA----TGTATTTAAAGTGCAGAATTTGATATGTTTCA-ACCTATGTATAC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21167645 314 -  24206276 ctcagctcactgcaacctccaccttctgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgTTTAAAATTTTTAAAAGCAAAAAAACCCTATAAAAGCAAGTATGTGCATTTAAATCCTACCATTCAGAGATAACTAAGTTTGCAAAAGTTaacagctttgagac----ctgacatataaactgca----tgtatttaaagtgcagaatttgatatgtttca-acctatgtatac
i chlSab2.chr29             C 0 C 0
s calJac3.chr6              136098763 313 - 158406734 ctcagctcactgtaacctctgcctcccaggttcaagtgattgtcctgcctcagcttcccaagtatctgggattacaggtgcccaccaccactcccagctaatttttgtatttttagtagagatgaggtttcaccatgttggccatgctggtTAAAATTTTTAAAAGC--AAAAGCCCTATAAAAGCAAATATGTGCACTTAATTCCTACCATTTAGAGATAACTATATTTACAAAGGGTAACAG--TTAAGAT---ATTGATACGTTCGATTCAGACCTTTATTCAGACAGTAAAAT---AAAAATTTCACACTTAAGTATAC
i calJac3.chr6              n 234 n 234
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=1504064.000000
s hg38.chr15_KI270850v1_alt    406031 626 +    430880 atacccacgaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaagtttATTTATTTCATTATTTGACCACTTATCGTCAAGTTCTGccccaaaagtttaatacccttttgaaatcctttcctacctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactggaggttagttggcatttgatagaattctgtgccaacagaattatgtggtatatactcttttgtctggcttctttcactgaacataattatcctgaaattcatccatgttgtagtagcaacaatagtttattcctctttactgctgagcagtactcctttgcatttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaggctatgaacatttgtgttaagtttgtatacgg-taaatggtttcatttctcttgagtGtgaccaacactactcaaaactgtcaacataatcgaaaataagggaagtctgagaaactgccacagtctggaggagcccacatgatgaataatgtgatatcctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
s panTro4.chr15              80188380 627 +  99548318 atacccacgaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaagtttatttatttcattatttgaccatttatcctcAAGTTCTGccccaaaagtttaatgccctttttaaatcctttcctacctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactggaggttagttggcatttgatagaattctgtgccaacagaattatgtggtatatactcttttgtctggcttgtttcactgaacataattatcctgaaattcatccatgttgtagtagcaacaatagtttattcctctttactgctgagcagtattcctttgcatttgtttatccattcatctattggtggacatctgggttgtttccaggttttggctattatatataaagaggctatgaacatttgtgttaagtttgtatacggataaatggtttcatttctcttgagtGtgaccaatactactcaaaactgtcaacataatcgaaaataagggaagtctgagaaactgccacagtctggaggagcccacatgatgactaatgtgatatcctgggtggtatcctggtacagaaaaagcacattaggtaaaaactaag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10203168 623 +  10928107 atacccacgaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaag----tttATTTCATTATTTGACCACTTATCCTCAAGTTCTGccccaaaagtttaacgcccttttgaaatcctttcctacctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactggaggttagttggcatttgatagaattctgtgcaaacagaattatgtggtatatactcttttgtctggcttctttcactgaacataattatcctgaaattcatccatgttgtagtagcatcgatagtttattcctctttactgctgagcagtactcctttgcatttgtttatccattcatctattgatggacatctgggctgtttccaggctttggctattatatataaagaggctatgaacatttgtgttaagtttgtatatggataaatggtttcatttttcttgagtGtgaccaatactactcaaaactgtcaacataattgaaaataagggaagtctgagaaactgccacagtctggaggagcccacatgatgactaatgtcatatcctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17277150 623 - 121039945 atacccacgaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaagtttatttatttcattatttgaccacttatcctcaaattctgccccaaaagtttaatgcccttttc--atcctttcctacctacctctgagtcctcttgcccaggcaaccagtgatctctctgctgtaactagaggttagctggcatttgatagaattcggtgcaaacagaattatgtagtatatactcttttgtctggcttctttcgctgaacataattatcctgaaattcatccatgttgtagtagcatcaatagtttattcctctttactgctgagcagtactcctttgcatttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaggctatgaacatttgtgttaagtttgtatatagataaatggtttcatttctcttgagtgtgaccaatactactcaaaactgtcaacataatcgaaaataaggaaaatctgagaaactgccacagtctggaggagcccacatgaggactaatgtgatatcctgggtgggatcctggtacagaaaaag--cattaggtaaaaactaag
i nomLeu3.chr6              C 0 I 447
s rheMac3.chr7              106745343 620 - 170124641 atacccacgaaaccattaccaaaagtcaagataatgaacgtatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttctacccacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaattctgagcaaacagaattatgtag--tatactcttttgtctggcttctttcgctgagcataactatcctgaaatttatccatgctgtagtagcatcaatagtttattcctctttactgctgagcagtactcctttgcatttgtttatccattcatctactgatggccatctgggttgtttccaggttttggctattatatataaagaggctataaacatttgtgttaagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcctacatgatgactaatgtgatattctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108478300 620 - 171882078 atacccacgaaaccattaccaaaagtcaagataatgaacgtatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttctacccacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaattctgagcaaacagaattatgtag--tatactcttttgtctggcttctttcgctgagcataactatcctgaaattcatccatgctgtagtagcatcaatagtttattcctctttactgctgagcagtactcctttgcatttgtttatccattcatctactgatggccatctgggttgtttccaggttttggctattatatataaagaggctataaacatttgtgttaagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcctacatgatgactaatgtgatattctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103245926 619 - 162156779 ATACCCACGAAACCATTACCAAaagtcaagataatgaacatatccatctT-CCCAAAAG----CTTATTTCATTATTTGACCTCTTATCCTCAAGTTCTGCCCCAAAAGTTTAATGCCC-TTTGAAATCCTTTTCTACCTACCTCTGAGTCCTCTTGCCCAGGCAACCACCGATCTCCCTGCTGTCACTAGAGGTTAGTTGGCATTTGATAGAATTCTGAGCAAACGGAATTATGTAG--TATActcttttgtctggcttctttcgctGAGCATAATTATCCTGAAATTCATCCATGCTGTGGTAGCATCAATAGTTTATTCCTCTTTACTGCTGAGCAGTACTCCTTtgcatttgtttatccattcatctactgatggccatctgggttgtttccaggttttggctaTTATATATAAAGaggctataaacatttgtgttaaGTTTGTATATGGATAAATGGTGTCACTTCTCTTGAGTGTGACCAATACTACTCAAAACCGTCAACATAATCGAAaataaggaaagtctgagaaactgccacAGTCTGGAGGAGCCTACATGATGACTAATGTGATATTCTGGGTGGGATCCTGGTACAGAAAAAgcacattaggtaaaaactaag
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21167959 620 -  24206276 atacccatgaaaccattaccaaaaatcaagataataaacatatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttctacctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaaatctgagcaaacggaattatgtag--tatagtcttttgtctagcttctttcgctgagcataattatcctgaaattcatccatgctgtagtagcatcaatagtttattcctctttactgctgagcagtactcctttgcatttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaagctataaacatttgtgttaagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcctacatgatgactaatgtgatattctggatgggatcctggtacagaaaaagcacattaggtaaaaactaag
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 234 - 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=303845.000000
s hg38.chr15_KI270850v1_alt    406657 168 +    430880 aaaatccaaataaaatacagactacagtatcaatattgcttcactaggtgtgacaaatgcacaataataatgtaagttgttagcaaaatagggg-aaattaggtacaggatatacaggaattctctatgctagctttgtaacttttctattaatTGTTATTAATTCTAT
s panTro4.chr15              80189007 168 +  99548318 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaataataatgtaagatgttagcaaaatagggg-aaattaggtacaggatatacaggaattctctatgctagctttgtaacttttctattaatTGTTATTAATTCTAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10203791 168 +  10928107 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaatgtaagatgttagcaaaatagggg-aaattaggtacaggatatacaggaattccctatgctatctttgtaacttttctattaatTGTTGTTAATTCTAT
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106745963 169 - 170124641 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagacgttagcaaaatagggggaaactaattacaggatatacaggaattctctgtgctatctttgtaacttttctattaattgttattaattatat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108478920 169 - 171882078 aaaatccaaataaaatacagactacaatatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagatgttagcaaaatagggggaaactaattacaggatatacaggaattctctgtgctatctttgtaacttttctattaattgttattaattatat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103246545 169 - 162156779 aaaatccaaataaaatacagactaCAGTATCAATATTGCTTCATTAGGTGTGACAAATGCACAATACTAACGTAAGACGTTAGCAAAATAGGGGAAAACTAATTACAGGATATACAGGAATTCTCTGTGctatctttgtaacttttctattaattgttattaattatat
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21168579 169 -  24206276 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagacgttagcaaaataggggaaaactaattacaggatatacaggaattctctgtgctatctttgtaacttttctattaattgttattaattatat
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 234 - 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I
e nomLeu3.chr6               17277773 447 - 121039945 I

a score=1938.000000
s hg38.chr15_KI270850v1_alt    406825 7 +    430880 TAAAGtt
s rheMac3.chr7              106746132 7 - 170124641 taaagtt
i rheMac3.chr7              C 0 I 14
s chlSab2.chr29              21168748 7 -  24206276 taaagtt
i chlSab2.chr29             C 0 I 14
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 234 - 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I
e papAnu2.chr7              103246714 0 - 162156779 C
e macFas5.chr7              108479089 0 - 171882078 C
e nomLeu3.chr6               17277773 447 - 121039945 I
e ponAbe2.chr15_random       10203959 0 +  10928107 C
e panTro4.chr15              80189175 0 +  99548318 C

a score=0.000000
s hg38.chr15_KI270850v1_alt    406832 285 +    430880 tttttttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgggatctcggctcactgcaagctccgcctctcgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcccggctaattttttgtatttttagtagagacggggtttcaccgttttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacagg
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 234 - 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I
e chlSab2.chr29              21168755  14 -  24206276 I
e papAnu2.chr7              103246714   0 - 162156779 C
e macFas5.chr7              108479089   0 - 171882078 C
e rheMac3.chr7              106746139  14 - 170124641 I
e nomLeu3.chr6               17277773 447 - 121039945 I
e ponAbe2.chr15_random       10203959   0 +  10928107 C
e panTro4.chr15              80189175   0 +  99548318 C

a score=3640.000000
s hg38.chr15_KI270850v1_alt    407117 4 +    430880 TAAA
s panTro4.chr15              80189175 4 +  99548318 TAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10203959 4 +  10928107 TAAA
i ponAbe2.chr15_random      C 0 C 0
s macFas5.chr7              108479089 4 - 171882078 taaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103246714 4 - 162156779 taaa
i papAnu2.chr7              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 234 - 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I
e chlSab2.chr29              21168755 14 -  24206276 I
e rheMac3.chr7              106746139 14 - 170124641 I
e nomLeu3.chr6               17277773 447 - 121039945 I

a score=16462.000000
s hg38.chr15_KI270850v1_alt    407121 14 +    430880 GTTTTTAATTTTAT
s panTro4.chr15              80189179 14 +  99548318 GTTTTTAATTTTAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10203963 14 +  10928107 GTTATTAATTTTAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17278220 14 - 121039945 GTTATTAATTCTAT
i nomLeu3.chr6              I 447 C 0
s macFas5.chr7              108479093 14 - 171882078 gttattaattctat
i macFas5.chr7              C 0 I 3
s papAnu2.chr7              103246718 14 - 162156779 gttattaattctat
i papAnu2.chr7              C 0 I 3
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 234 - 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I
e chlSab2.chr29              21168755 14 -  24206276 I
e rheMac3.chr7              106746139 14 - 170124641 I

a score=271259.000000
s hg38.chr15_KI270850v1_alt    407135 121 +    430880 TAAC-TTTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATTCTAAAATGTAAGCTTATT-------AAAAAAAAA--------aagagtggaaccactgggtcttatggtaggtaaacatttaacctttt
s panTro4.chr15              80189193 121 +  99548318 TAAC-TTTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATTCTAAAATGTAAGCTTATT-------AAAAAAAAA--------aagagtggaaccactgggtcttatggtaggtaaacatttaacctttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10203977 128 +  10928107 TAAC-TTTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATTCTAAAATGTAAGCttattaaaaaaaaaaaaaaaa--------aagagtggaaccactgggtcttatggtaggtaaacatttaacctttt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17278234 123 - 121039945 TAATAACTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATACTAAAATGTAAGCTTATT------TAAAAAAAAA--------aagagtggaaccactgggtcttacagtaggtaaacatttaacctttt
i nomLeu3.chr6              C 0 I 482
s rheMac3.chr7              106746153 132 - 170124641 taaC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGAAAGCTATGCTAAAATGTAAGCTTATT---AAAAAAAAAAAAAGAAactt-aagagtggaaccactgggtcttatgatagataaacacttaacctttt
i rheMac3.chr7              I 14 C 0
s macFas5.chr7              108479110 134 - 171882078 taaC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGAAAGCTATGCTAAAATGTAAGCTTATT--AAAAAAAAAAAAAAGAAACTTAaagagtggaaccactgggtcttatgatagataaacacttaacctttt
i macFas5.chr7              I 3 C 0
s papAnu2.chr7              103246735 130 - 162156779 taaC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGAAAGCTATGCTAAAAtgtaagcttatt-----ttaaaaataaagaaactt-aaGAGTGGAACCACTGGGTCTTATGATAGGTAAACACTTAACCTTTT
i papAnu2.chr7              I 3 C 0
s chlSab2.chr29              21168769 129 -  24206276 taaC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGAAAGCTATGCTAAAATGTAAGCTTATT------AAAAAAAAAaaaaactt-aagagtgaaaccactgggtcttatgataggtaaacacttaacctttt
i chlSab2.chr29             I 14 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 234 - 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=127345.000000
s hg38.chr15_KI270850v1_alt    407256 55 +    430880 aggaacctgccaaactgttttccaaatagttgtaccattttgcattcctaccagc
s panTro4.chr15              80189314 55 +  99548318 aggaacctgccaaactgttttccaaatagttgtaccattttgcattcctaccagc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10204105 55 +  10928107 aggaacctgccaaactgttttccaaatagttgtaccattttgcactcctaccagc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17278839 55 - 121039945 aggaacctgccaaactgttttccaaatagttgtaccattttgcattcctaccagc
i nomLeu3.chr6              I 482 C 0
s rheMac3.chr7              106746285 53 - 170124641 aggaacctgccaaactgttttccaaaaagttgtaccattttgcattcct--cagc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108479244 53 - 171882078 aggaatctgccaaactgttttctaaaaagttgtaccattttgcattcct--cagc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103246865 53 - 162156779 AGGaacctgccaaactgttttccaaaaagttgtaccattttgcattcct--caGC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21168898 53 -  24206276 aggaacctgccaaattgttttccaaaaagttgtaccattttgcattcct--cagc
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 234 - 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=6876.000000
s hg38.chr15_KI270850v1_alt    407311 2 +    430880 ag
s panTro4.chr15              80189369 2 +  99548318 ag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10204160 2 +  10928107 aG
i ponAbe2.chr15_random      C 0 I 472
s nomLeu3.chr6               17278894 2 - 121039945 ag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106746338 2 - 170124641 ag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108479297 2 - 171882078 ag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103246918 2 - 162156779 AG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21168951 2 -  24206276 ag
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22307969 2 + 158406734 ag
i calJac3.chr6              I 234 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=893612.000000
s hg38.chr15_KI270850v1_alt    407313 399 +    430880 tttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACA-----CTTTTTGTGTATATTTTGTCA--ACATATATATTGAAAACACACATAAATACAC----ATATGTATATTCTCTCTCATATACACTTTGACAAATGCACAATACGTATGTATGTATATATGAGACAGAA------TATGTATATTCTTCAAACAAGATCAGCAAAATCAGACTTCCTGGTTCCTATAGCAAACTGGCAGTTGCCTAGATCCAAATCTCTCCATATATCCTCTAAAACTCACAGATGAACAAAAGCAATAA----AACTCACATCTCAAAACTATAGACTATTTGGGAGACAGGTTACCTC-AAACAATTTGCACATAAGAA
s panTro4.chr15              80189371 399 +  99548318 tttgacagtttcagt---------tattcaacatccctgctaattcttggtaagatcagtcttctcaattttagacattctaagaggCAAAAACA-----CTTTTTGTGTATATTTTGTCA--atatatacattgaaaacacacatatatacac----atatgtatattctctctcatatacactttgacaaatgcacaatacgtatgtatgtatatatGAGACAGAA------TATGTATATTCTTCAAACAAGATCAGCAAAATCAGACTTCCTGGTTCCTATAGCAAACTGGCAGTTGCCTAGATCCAAATCTCTCCATATATCCTCTAAAACTCACAGATGAACAAAAGCAATAA----AACTCACATCTCAAAACTATAGACTATTTGGGAGACAGGTTACCTC-AAACAATTTGCACATAAGAA
i panTro4.chr15             C 0 C 0
s nomLeu3.chr6               17278896 414 - 121039945 tttgacagtttcagttattcaacatattcaacatccctgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACA-----CTTTTCGTGTATATTTTGTCAatatatatatattgtatacacacatatatacac----atatgtatattctgtctcatatacacgttgacaaatgcacaatacatatgtatgtatatatgagatagaa------tatgtatatTCTTCAAACAAGATCAGCAAAATCAGACTTCTTGGTTCCTATAGGAAATTGGCAGTTGCCTGGATCCAAATCTCTCCATATATCCTCTAAAACTCACAGATGAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTTGGGAGACAGGTTACCAC-AAACAATTCGCACATAAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106746340 405 - 170124641 tttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaatcttagacattctaagaggCAAAAACA-----CTTTTTGTGTATATTTTGTCA--atatatatattgtatacacatatatacacac--------gtatattctctctcatatacacattgacaaacgcacaatacatatgtatgtatatatgagagagaatatttttatatatatTCTTCAAACAACATCAGCAAAATCAGACTTCCTCGTACCTACAGG-AACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTAAAACTCACAGATAAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTTGGGAGACAGGTTACCACAAAACAATTCGCACTTAAGAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108479299 405 - 171882078 tttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaatcttagacattctaagaggCAAAAACA-----CTTTTTGTGTATATTTTGTCA--atatatatattgtatacacatatatacacat--------gtatattctctctcatatacacattgacaaacgcacaatacatatgtatgtatatatgagagagaatatttttatatatatTCTTCAAACAACATCAGCAAAATCAGACTTCCTCGTTCCTACAGG-AACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTGAAACTCACAGATAAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTTGGGAGACAGGTCACCACAAAACAATTCGCACTTAAGAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103246920 406 - 162156779 TTTGACAGTTTCAGT---------TATTCAACATCCCTGCCAATTCTTGGTAAGGTCAGTCTTCTCAATCTTAGACATTCTAAGAGGCAAAAAca-----ctttttgtgtatattttgtca--atatatatattgtatacacatatatacacac--------gtatattctctctcatatacacattgacaaacgcacaatacatatgtatgtatatatgagagagaatatttttatatatattcttcaaACAAGATCAGCAAAATCAGACTTCCTCGTTCCTACAGGAAACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTAAAACtcacagataaacaaaagcaataaaactaACTCACATCTCAAAACTATAGACTATTTGGGAGACAGGTTACCACAAAACAATTCGCACATAAGAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21168953 404 -  24206276 tttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACA-----CTTTTTGTGTATATTTTGTCA--atacatatattgtatacacatatatacacat--------gtatattctctctcatatacacattgacaaatgcacaatacgtatgtatg--tatatgagagagaatatttttatatatatTCTTCAAACAAGATCAGCAAAATCAGACTTCCTCGTTCCTACAGGAAACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTAAAACTCACAGATAAACAAAAGCAGTAAAACTAACTGACGTCTCAAAACTATAGACTATTTGGGAGACAGGTTACCACAAAACAATTCGCACATGAGAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22307971 412 + 158406734 TTtgacagtttcagt---------tattcaacatccttgccaattcttcataaggtcagtcttctcaattttagacattctaagaggCAAAAACATTCACTTTTTGGTGTATATTTTGTCA--atatatatgatgtatacacacacgtatacatacacatatgtatactctctctcatatacacactgacaaacgcacaatacatatatatg----tatgagagagaatacg--tatatatatTTTTCAAACAAGATCAGTAAGATCAGAATTCCTGGTTCCTACAGGAAATTGGCAGTTGCCTAGATCCAAATCTCTCCATATAGCCTCCAAAACTCACAGATGAATTAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTTAGGAGACAGGATACCAT-AAACAATTTGCACATAAGCG
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e ponAbe2.chr15_random       10204162 472 +  10928107 I

a score=508176.000000
s hg38.chr15_KI270850v1_alt    407712 189 +    430880 GGACTCAAATGTCCAAAACCTGAAATATCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagcagcaaacaaacagaaaatggcactaaaaaacaaacaaa--------caaaaaactc--ctttacaatagcattaaatac-catcaaaacctagagataaacttaaagaatctgcaagacatctacaaacactaa
s panTro4.chr15              80189770 189 +  99548318 GGACTTAAATGTCCAAAACCTGAAATATCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagcagcaaacaaacagaaaatggcactaaaaaacaaacaaa--------caaaaaactc--ctttacaatagcattaaatac-catcaaaacctagagataaacttaaagaatctgcaagacatctacaaacactaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10204634 183 +  10928107 GGACTCAAATGTCCTAAACCTGAAATATCTACTTCTGGAGCCAACACTAGATAGGGCAGTCACagcagcaaacaaacagaaaatggcactaaaaaacaaacaaa--------ctaaaaactc--ctttacaatagcattaaatac-catcaaaacctagaga------taaagaatctgcaagacatctacaaacactaa
i ponAbe2.chr15_random      I 472 C 0
s nomLeu3.chr6               17279310 174 - 121039945 GGACTCAAATGTCCAAAACCTGAAATATCTACTTCTGGAGCCAGCACTAGATAGGGCTGTCACagcagcaaacaaacagaaaatggcacta-----------------------aaaaactc--ctttacagtagcattaaatac-catcaaaacctagagataaacttgaagaatctgcaagacatctacaaacactaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106746745 179 - 170124641 GGACTCAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagcag----caaacagaaaatggcactaaaaagcaaacaaa--------caaaaaaatc--ctttacattagtattaaatac-catcaaaacctagaga------taaagaatgtgcaagacatctacaaacactga
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108479704 179 - 171882078 GGACTCAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagcag----caaacagaaaatggcactaaaaagcaaacaaa--------caaaaaaatc--ctttacattagtattaaatac-catcaaaacctagaga------taaagaatgtgcaagacatctacaaacactga
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103247326 179 - 162156779 GGACTCAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACAGCAG----CAAACAGAAAATGGcactaaaaagcaaacaaa--------caaaaaaatc--ctttacATTAGTATTAAATAC-CATCAAAACCTAGAGA------TAAAGAATGTGCAAGACATCTACAAAcactga
i papAnu2.chr7              C 0 I 309
s chlSab2.chr29              21169357 179 -  24206276 GGACTCAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagcag----caaacagaaaatggcactaaaaagcaaacaaa--------caaaaaactc--ctttacattagtattaaatac-catcaaaacctagaga------taaagaatgtgcaagacatctacaaacactga
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22308383 193 + 158406734 GGACTCAAATGTCCAAAACCTGGAATATCTACTTCTGGAGCCCACACTAGATAGGGCTGTCACAGCAGCAAACAAACAGAAAATGGCACTAAAAAAAAAAAAAAAACAAAACCAAAAAACCCTTCTTTACAATAGCCTTAAGTACTCATCAaaatcta-------actcaaagaatgtacaagacatctacgaacactga
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=3600.000000
s hg38.chr15_KI270850v1_alt    407901 1 +    430880 g
s panTro4.chr15              80189959 1 +  99548318 g
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10204817 1 +  10928107 g
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17279484 1 - 121039945 g
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106746924 1 - 170124641 g
i rheMac3.chr7              C 0 I 309
s macFas5.chr7              108479883 1 - 171882078 g
i macFas5.chr7              C 0 I 311
s papAnu2.chr7              103247814 1 - 162156779 g
i papAnu2.chr7              I 309 C 0
s chlSab2.chr29              21169536 1 -  24206276 g
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22308576 1 + 158406734 g
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=9828.000000
s hg38.chr15_KI270850v1_alt    407902 3 +    430880 aaa
s panTro4.chr15              80189960 3 +  99548318 aaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10204818 3 +  10928107 aaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17279485 3 - 121039945 aaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106747234 3 - 170124641 aaa
i rheMac3.chr7              I 309 C 0
s macFas5.chr7              108480195 3 - 171882078 aaa
i macFas5.chr7              I 311 C 0
s papAnu2.chr7              103247815 3 - 162156779 aaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21169537 3 -  24206276 aaa
i chlSab2.chr29             C 0 I 2772
s calJac3.chr6               22308577 3 + 158406734 aaa
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=1642452.000000
s hg38.chr15_KI270850v1_alt    407905 701 +    430880 atttttaaagaccagataagcaaagggatatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcaacgcaatcccaatcaaaatcccagtagaactttgtgtatgtggggc-agggggtggagcttggactgatgagctgaatctataatttatatagaaatgtgaagatcc----aagaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaaagcctattataaagctacaataattaagacacaaggac-agataaatagatcaatggaagagaagagagtatccagaaacggatctgtacatatactatggatgcctgatttatgagaaaggcaacatggcaatacaatttaaaagaattttctttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccttct----tataccatgtacaaaacaaaattccagatgggttgcaaatctaagtgtgaaaggtaaaacaactttagaaaagaaaca----tatactaccttcatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaaacacaatggaataaagtcagtaaattatacttcattacaatttaagttttctgttattcaaaagacgccaattaagagtacaaagaca
s panTro4.chr15              80189963 705 +  99548318 atttttaaagaccagataagcaaagggatatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcaatgcaatcccaatcaaaatcccagtagaactttgtgtatgtggggc-agggggtggagcttggactgatgagctgaatctataatttatatagaaatgtgaagatcc----aagaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaaagcctattataaagctacaataattaagacacaaggac-agataaatagatcaatggaagagaagagagtatccagaaacggatctgtacatatactatggatgcctgatttatgagaaaggcaacatggcaatacaatttaaaagaattttctttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccttctatcttataccatgtacaaaacaaaattccagatgggttgcaaatctaagtgtgaaaggtaaaacaactttagaaaagaaaca----tatactaccttcatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaaacacaatggaataaagtcagtaaattatacttcattacaatttaagttttctgttattcaaaagatgccaattaagagtacaaagaca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10204821 706 +  10928107 atttttaaagaccagataagcaaagggatatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcaatgcaatctcaatcaaaatcccagtagaactttgtgtatgtggggc-ggagcgtggagcttggactgatgagctgaatctataatttacatagaaatgtgaagatcc----aagaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaaagcctattataaagctacaataattaagacacaaggacaagataaatagatcaatggaagagaagagagtatccagaaacggatctgtacatacactatggatgcctgatttataagaaaggcaacatggcaatacaatttaaaagaattttctttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccttctatcttatactatgtacaaaacaaaattccagatgggttgcaaatctaagtgtgaaaggtaaaacaactttagaaaagaaaca----tatattaccttcactaccttggaataggcaaatatttcttaaacaggccac-aagcattaaacacaatggaataaagtcagcaaattatacttcattacaatttaagttttctgttattcaaaagacgccaattaagagtacaaagaca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17279488 701 - 121039945 atttttaaagaccagataaacaaaaggatatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcgacgcaatcccaatcaatatcccagtagaactttgtgtatgtggggc-ggggggtggagcttggactgatgagctgaatctataatttatatagaaatgtgaagatcc----aagaaaagccaagaatccaaaaagacaaagttgaaggacttcactacc----atcaaagcctattataaacctacaataattaagacacaaggac-agataaatagatcaatggaagagaagagagtatccagaaatggaactgtacatatactatggatgcctgatttatgagaaaggcaacatggcaatacaatttaaaagaatcttctttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccctctatcttataccatgtacaaaacaaaattccagatgggctgcaaatctaagtgtgaaaggtaaaacaacttttgaaaagaaaca----tatactaccttcatgaccttggaataggcaaatatttcttaaacaggtcac-aagcattaaacacaatggaataaagtcagtaaattatacttcattacaatttaagttttctgttacccaaaagacaccaattaagagtacaaacaca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106747237 703 - 170124641 atttttaaaaaccagataagcaaagggatataccaacttcttaaattagaagacttgtcaacacatccatgatccagaacttgattcacaggtttaatgcaatcccagtcaaaatcctagtagaactttgtgtatgtggggc-ggggggtggagcctggactgatgagctgaatttataatttatatagaaatgtgaagatcc----aagaaaagccaagaatccaaaaagacaaagttgaagggcttcactaccaactatcaaggcctattataaagctacaataattaag--acaaggac-agataaatagaccaatggaagagaagagagtatccagaaactgatctgtacatatactatggatgcctgatttatgagaaaggcgacatggcaatacaatttagaagaaatttcttccaccaaaatgatgctgagtcaactggttatccacacagaacaaaataaatcttctccctctagcttacaccatgtacaaaacaaaattccagatgagttgcaaatctaagtgtgaaaggtaaaacaacttttgaaaagaaaca----tatactacctccatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaagcacaatggaataaagtcattaaattatacttcattacaatttaagttttctgttattcaaaagacaccaattaagagtacaaaggca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108480198 703 - 171882078 atttttaaaaaccagataagcaaagggatataccaacttcttaaattagaagacttgtcaacacatccatgatccagaacttgattcacaggtttaatgcaatcccagtcaaaatcctagtagaactttgtgtatgtggggc-ggggggtggagcctggactgatgagctgaatttataatttatatagaaatgtgaagatcc----aagaaaagccaagaatccaaaaagacaaagttgaagggcttcactaccaactatcaaggcctattataaagctacaataattaag--acaaggac-agataaatagaccaatggaagagaagagagtatccagaaactgatctgtacatatactatggatgcctgatttatgagaaaggcgacatggcaatacaatttagaagaaatttcttccaccaaaatgatgctgagtcaactggttatccacacagaacaaaataaatcttctccctctagcttacaccatgtacaaaacaaaattccagatgagttgcaaatctaagtgtgaaaggtaaaacaacttttgaaaagaaaca----tatactacctccatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaagcacaatggaataaagtcattaaattatacttcattacaatttaagttttctgttattcaaaagacaccaattaagagtacaaaggca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103247818 704 - 162156779 atttttaaaaagcagataagCAAAGGGATATACCAACTTCTTAAATTAGAAGACTTGTCAACACATCCATGATCCAGAACTTGATTCATAGGTTTAATGCAATCCCAGTCAAAATCCTAGTAGAACTTTGTGTATGTGGGGCgggggggTGGAGCTTGGACTGATGAgctgaatttataatttatatagaaatgtgaAGATCC----AAGAAAAGCCAAGAATCCAAAAAGACAAAGTTGAAGGGCTTCACTACCAACTATCAAGGCctattataaagctacaataattaag--aCAAGGAC-AgataaatagaccaatggaagagaagagAGTATCCAGAAACTGATCTGTACATATACTATGGATGCCTGATTTATGAGAAAGGCGACATGGCAATACAATTTagaagaaatttcttccaccaaaatGATGCTGAGTCAACTGGTTATCCAcacagaacaaaataaatcttCCCCCTCTAGCTTACACCATGTACAAAACAAAATTCCAGATGAGTTGCAAATCTAAGTGTGAAAGGTAAAACAACTTTTGAAAAGAAACA----TATACTACCTCCATGACCTTGgaataggcaaatatttcttaaacaggCCAC-AAGCATTAAGCACAATGGAATAAAGTCATTAAATTATACTTCATTACAATTTAAGTTTTCTGTTATTCAAAAGACACCAATTAAGAGTACAAAGGCA
i papAnu2.chr7              C 0 C 0
s calJac3.chr6               22308580 706 + 158406734 atttttaaagaccagataaacaaagggatatgccggcttcttgaactggaagacttgttaacatatccatcattcagaaattgatttatacacaaaacgcaatcccaatcaaaatcccagtataactttgtgtatgtggggt-ttgg---ggagcttggactgataagctaaatctaaaatttatatggaaatgtcaagatccaaaaaaaaaaagccaagaatccaaaaagaccaagttgaaggacttcactaccaactatcaatgccaattaaaaagctacaataattaagacagaaggac-agataaatagatcaatggaagagaagcaagtatccagaaacagatctgcacatatattacagatacctgatttatgagaaaggtgacatagcaatacaatttaaaagaattttctttcaccaaaatgatgctgagtcaactggctattcatacagaacaaaattaatcttgcccctctagcttataccatgtacaaaacaaaattccagatgtgttataaatctaagtgtgaaaggtaaaacaacttttgaaaagaaacagtattatactacctttatgaccatggaaaaggcaaacatttcttaaacaggccacgaagcattaagaat-----aataaagtcaataaattacacttaattacaatttaagttttctgttattcataagacaccaattaagattacaaaggca
i calJac3.chr6              C 0 I 8921
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e chlSab2.chr29              21169540 2772 -  24206276 I

a score=1034985.000000
s hg38.chr15_KI270850v1_alt    408606 598 +    430880 aatcacagactcaaagaaaataattttaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccagtaaacatgaaaatgtgctcaacttcatcagtcactaaggacatgaacattaaaaccacaacagatactgctacatacaccccaaaatggctaaaatgaaagacaatacaattattgatgaggatatgaaacaacccaaaccatcgtacaccactggaagtgtaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatacgtataccctatgacccaacaatccctctcct-aggaagataaccaagggaaattaattcaccaaaagataatagcagcactattcgcaatggccccaaactggaaacaactcaaatgcctattaacagtataatgaataagcactggtacattcatacaatggaatactgtaaagcaacaggaatcaatgacccacaaccagttgcaacatggatg
s panTro4.chr15              80190668 598 +  99548318 aatcacagactcaaagaaaataattttaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccagtaaacatgaaaatatgctcaacttcatcagtcactaaggacatgaacattaaaaccacaacagatactgctacatacaccccaaaatggctaaaatgaaagacaatacaattattgatgaggatatgaaacaacccaaaccatcgtacaccactggaagtgtaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatacatatactctatgacccaacaatccctctcct-aggaagataaccaagggaaattaattcaccaaaagataatagcagcactattcgcaatggccccaaactggaaacaactcaaatgcctattaacagtataatgaataagcactggtacattcatacaatggaatactgtaaagcaacaggaatcaatgacccacaaccagttgcaacatggatg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10205527 598 +  10928107 aatcacagactcaaagaaaataattttaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaaataaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgaaaatgtgctcaacttcatgagtcaccaaggacatgaacattaaaaccacaacagatactgctacatacgccccaaaatggctaaaatgaaagacaatacaattattgatgaggatacgaaacaacccaaaccattgtacaccactggaagtgtaaactggtataaccactgagaaaaaccggcagcatctcaaagataaacatacgtataccctatgacccaacaatccctctcct-aggaagataatcaagagaaattaattcaccaaaagataatagcagcactattcacaatggccccaaactggaaacaactcaaatgcctattaccagtataatgaataagcactgatacattcatacaatggaatactgtaaagcaacaagaatgaatgacccacaaccagctgcaacatggatg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17280189 598 - 121039945 aatcacagactcgaagaaaataattgtaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgaaaatgtgctcaacttcatcagtcaccaaggacatgaacattaaaaccacaacagatactgctacatacgccccaaaatggctaaaatgaaagacagtacaattattgatgaggatatgaaacaacccaaaccatcgcacaccactggaagtgtaaactggtataaccactgagaaaaactggcagcatctcaaagataaacgtatgtatgccctatgacccaacaatccctctcct-acgaagataaccaagagaaattaattcgccaaaagataatagcagcactactcacaatggccccaaactggaaacaacacaaatgcctattaacagtataatgaataagcactgctacactcatacaatggaatactgtaaagcaacaggtatgaatgacccacaactagctgcaacatggatg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106747940 571 - 170124641 aaccacagactcgaagaaaataattgtaatacatatttcagagacagaactc--atgtggcttatataaagaactgctacaagtaaacaacaaaaaggtagataaccctaagaaaaatgagtataaggcatgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgcaaatgtgctcaacttcattagtcaccaaggaaatgaacattaaaaccacaacagatactgctacatactctccaaaatggctaaaatgaaagacaa---------tgatgaggatatgaaacaacgcaaaacactgtacactactagaagtgcaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatatgtata-----------------ccctctcctaaggaagataatcaagagaaattaattcaccaaaagataatagcagcactactcacaatggccccaaactggaaacaattcaaatgcctattaacagtataacgaataatcattggtacattcatacgatgaaatactgtaaagcaacagaaatgaatgatccacaaccagttgcaatatggatg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108480901 571 - 171882078 aaccacagactcgaagaaaataattgtaatacatatttcagagacagaactc--atgtggcttatataaagaactgctacaagtaaacaacaaaaaggtagataaccctaagaaaaatgagtataaggcatgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgcaaatgtgctcaacttcattagtcaccaaggaaatgaacattaaaaccacaacagatactgctacatactctccaaaatggctaaaatgaaagacaa---------tgatgaggatatgaaacaacgcaaaacactgtacactactagaagtgcaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatatgtata-----------------ccctctcctaaggaagataatcaagagaaattaattcaccaaaagataatagcagcactactcacaatggccccaaactggaaacaactcaaatgcctattaacagtataacgaataatcattggtacattcatacaatgaaatactgtaaagcaacagaaatgaatgatccacaaccagttgcaatatggatg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103248522 582 - 162156779 AACCACAGACTCgaagaaaataattgtaatacATATTTCAGAGACAGAACTCATATGTGGCCTATATAAAGAACTGCTACAAGTAAACAACAAAAAGGTAGATAACCCTAAGAAAAATGAGTATAAGGCATGAAGAGACACTTCAAGAAAAAGGATATCCAAAGGCCAATAAACATGCAAATGTGCTCAACTTCATTAGTCACCAAGGAAATGAACATTAAAACCACAACAGATACTGCTACATACTCtccaaaatggctaaaatgaaagaCAATGCAATTATTGATGAGGATATGAAACAACCCAAAACACTGTACACTACTAGAAGTGCAAACTGGTATAACCACTGAGAAAAACTGGCAGCATCTCAAAGATAAACATATGTATA-----------------CCCTCTCCTAAGGAAGATAATCAAGAGAAATTAATTCACCAAAAGATAatagcagcactactcacaatggccccaaactggaaacaactcaaatgcctaTTAACAGTATAACGAATAATCattggtacattcatacaatgaaatactgtaaagcaacagaaatgaatGATCCACAACCAGTTGCAATATGGATG
i papAnu2.chr7              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22309286 8921 + 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I
e chlSab2.chr29              21169540 2772 -  24206276 I

a score=1746172.000000
s hg38.chr15_KI270850v1_alt    409204 835 +    430880 aaactcacagctaaagagtacatatctgggccgggtgtggttgctcacccctataatctcagcactttgggaagccaaggcaggcggatcacgaggtcaggagtttgagaccagccttgccaatatggtgaa-----tatggccagtatgtctctactatgtctctactaaaaatacaaaaattagccgggtgtggtggcatgtgcctgtagtcccagctacttgggaggctgagggagaagaatcccttgaacctgggaggcggaggatgcagggagccaagatcacaccactgcactgtagtctgggcgacagagcaagactctgtctc--------aaaaagaaaaaa-------aaagtgtaca-tatctgtgattccatttatgtaaattcaaaatcaggtacaatttatctatgcaattaaaagtcagcatgaactgggtgtggtggctcatgcctataatcccaacactttcggaagccaaggcaaggaatttgcttaagcccaagagtccaagaccagcctggtcaacacagcaagattc----------tgtctctacaaaaactt--aaaaaaaaaaattagttgggcatggtggcgcatgattgcagtcccatctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggct-----gcagtgagctatgatcatacaactgtgctgcagcctgggtgac----agtgatacccc--atctcagaaaaataaaaatttagcataacaagtgccctttgtaaactagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactagttatacaagatgtgttcagtatata
s panTro4.chr15              80191266 834 +  99548318 aaactcacagctaaagagtacatatctgggccgggtgcggttgctcacccctataatctcagcactttgggaggccaaggcaggcggatcacgaggtcaggagtttgagaccagccttgccaatatggtgaa-----tatggccagtatgtctctactatgtctctactaaaaatacaaaaattagccgggtgtggtggcgtgtgcctgtagtcccagctacttgggaggctgagggagaagaatcccttggacctgggaggcgaaggatgcagggagccaagatcacaccactgcactgtagtctgggcgacagagcaagactctgtctc--------aaaaaaaaaaaa-------aaagtgtaca-tatctgtgattccatttatgtaaattcaaaatcaggtacaatttatgtatgcaattaaaagtcagcatgaactgggtgtggtggctcatgcctataatcccaacactttcggaagccaaggcaaggaatttgcttaagcccaagagtccaagaccagcctggtcaacacagcaagattc----------tgtctctacaaaaactt--aaaaaaaaaa-ttagttgggcatggtggcgcatgattgcagtcccatctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggct-----gcagcgagctatgatcatacaactgtgctgcagcctgggtgac----agtgatacccc--atctcagaaaaataaaaagttagcataacaactgccctttgtaaactagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactagttatacaagatgtgttcagtatata
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10206125 828 +  10928107 aaactcacagctaaagagtacatatctgggccgggtgcagttgctcacccctataatcttagcactttgggaggctgaggcaggtggatcacaaggtcaggagtttgagaccagccttgccaatatggtgaa-----tatggccagtatgtctctactatgtctctactaaaaatacaaaaattagccgggtgtggtggcatgtgcctgtagtcgcagctacttgggaggctgagggagaagaatcccttgaacccaggaggcagaggatgcagggagccaagatcacaccactgcactgtagcctgcgcaacagagcaagactctgtctc---------------aaaaa-------aaagtgtacattatctgtgattccatttatgtgaattcaaaatcaggcacaatttatctatgcaattaaaagtcagcatgaactgggtgtggtggctcatgcctataatcccaacactttcggaagccaaggcaaggaatttgcttgagcccaagagtccaagaccagcctggtcaacacagcaagattc----------tgtctctacaaaaactt--gaaaaaaaaa-ttagctggacatggtggcgcatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggct-----gcagtgagctatgatcatgcaactgtgctgcagcctgggtgac----agtgatacccc--acctcagaaaaataaaaagttagcataacaattgccctttgtaaattagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactagttatacaagatgtgttcagtatata
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17280787 837 - 121039945 aaactcacagctaaagagtacatatctgggccgggtgcggttgctcacccctgtaatcttagcactttgggaggccgaggcaggcggatcacgaggtcaggagtttgagaccagccttgccaatatggtgaa-----tatggccagtatgcctctactatgtctctactaagaatacaaaaattaactgggtgtggtagcgtgtgcctgtagtcccagctacttggggggctgagggagaagaatcccttgaacctgggaggcggaggatgcagggagccaagatcgcaccactgcactgcagcctgggcgacagagcaagactctgtctc-------caaaaaaaaaaaa-------aaagggtaca-tatctgtgattccatttatgtaaattcaaaatcaggcacaattgatctatgcaattaaaactcagcatgaactgggtgtggtggctcatgcctataatcccaacacttctggaagccaaggcaaggaatttgcttgagcccaagagttcaagaccagcctggtcaacacagcaagattc----------tgtctctacaaaaattt--aaaaaaaaa--ttagttgggcatggtggcacatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggct-----gcaatgagctatgatcatgcaactgttctgcagcctgggtgaca-agagtgatacccc--atctcagaaaaataaaaagttagcataacaattgccctttgtaaattagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactagttacacaagatgtgttcagtagata
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106748511 842 - 170124641 aaactcacagctaaagagtacatacctgggcc-ggcacagtggctcatgcctgtaatcccagcactttgggaggctgaggagggatgatcacgaggtcaggagtttgagaacagcctggccaatatggtgaatataatatgaccaatatgtctctactatgtctctactaaaaatacaaaaattagccaggcatgatggcgctcgacagtagtgccagctactcaggaggctgaggcagaagaatcccttgaacccgggaagtggaggatacagggagccaaggtcacgccactgcactgcagcctgggcgacagagcaagactctgttt------------aaaaaaaaa-------aaaaagtaca-aatctgtgattccatttatgtaaattcaaaatcaggcaaaattgaactatgcaattaaaagtcagcatgaactgggtgtggtggctcacaactataatcccaacactttgggaagccagggcaaggaacttgcttgagcccaagagttcgagaccagactggtcaacacagcaagatcctacagaactttgtctctacaaaaactt--aaaaaaaaaaattagttgggcatggtggtgcatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagcgcagtgagctatgatc--------gtgctgcagcctgggtgagacagagtgatacccc--atctcagaa----aaaaagttagcagaacaattgccctttgtaaattagagactgaaaggattgcaaggggaattttagtgtattcttaatttttgcctctacatgtgaggagttatacaagatgtgttcagtgtata
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108481472 845 - 171882078 aaactcacagctaaagagtacatacctgggcc-ggcacagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggatgatcacgaggtcaggagtttgagaacagcctggccaatatggtgaatataatatgaccaatatgtctctactatgtctctactaaaaatacaaaaattagccaggcatgatggcgctcgactgtagtgccagctactcaggaggctgaggcagaagaatcccttgaacccgggaagtggaggatacagggagccaaggtcacgccactgcactgcagcctgggtgacagagcaagactctgtcta-----------aaaaaaaaa-------aaaaagtaca-aatctgtgattccatttatgtaaattcaaaatcaggcaaaattgaactatgcaattaaaagtcagcatgaactgggtgtggtggctcacaactataatcccaacactttgggaagccagggcaaggaacttgcttgagcccaagagttcaagaccagactggtcaacacagcaagatcctacagaactttgtctctacaaaaacttaaaaaaaaaaaaattagttgggcatggtggtgcatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagcgcagtgagctatgatc--------gtgctgcagcctaggtgagacagagtgatacccc--atctcagaa----aaaaagttagcagaacaattgccctttgtaaattagagactgaaaggattgcaaggggaattttagtgtattcttaatttttgcctctacatgtgaggagttatacaagatgtgttcagtgtata
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103249104 832 - 162156779 AAACTCACAGCTAAAGAGTACATACCtgggcc-ggcacggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggatgatcacgaggtcaggagtttgagaacagcctggccaatatggtgaatatAGTATGACCAATATGTCTCTactatgtctctactaaaaatacaaaaattaaccaggcatgatggcgctcgactgtagtgccagctactcaggaggctgaggcagaagaatcccttgaacccgggaagtggaggatACAgggagccaaggtcacgccactgcactgcagcctgggcgacagagcaagactctgtct------------aaaaaaaaa-------aacaagtaca-aatctgtgattccatttatgtaaattcAAAATCAGGCAAAATTGAACTATGCAATTAAAAGTCAGCAtgaactgggtgtagtggctcacaactataatcccagcactttgggaagccagggcaaggaacttgcttgagcccaagagttcgagaccagactggtcaacacagcaagatcc----------tgtctctacaaaaactt-aaaaaaaaaaaattagttgggcatggtggtgcatacttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagcgcagtgagctatgatc--------gtgctgcagcctgggtgagacagagtgatacccc--atctcag-a----aaaaagttAGCAGAACAATTGCCCTTTGTAAATTAGAGACTGAAAGGATTGCAAGGGGAATTTTAGTGTATTCTTAATTTTTGCCTCTACATGTGAGGAGTTATACAAGATGTGTTCAGTGTATA
i papAnu2.chr7              C 0 C 0
s calJac3.chr6               22318207 819 + 158406734 aaattcacacctaaagagtacatatctgggccaggcgcagtggctcacacctgtaatctcagcactttgggaggccaaggcaggcagatcaccaggtcaggaattcaag-ccagcctagccaatatggtgaa-----------------------accccatctctactaaaaatacaaaaattagccaggcatggtggtatgcccctgtagtcccagctactcaggaggctcaggcaggagaactgcttgaacccaggaggcagaggttgcagtgtgttgagatagcatcactgcactctagtctggacaacag----agactccatctcaaaacaaaacaaaacaaaaaggtacttaaagagtaca-tatctgtgattccatttatgtaaattcaaaatcaggcaaaatttatctatacaattaaaagtcagcatgaactgggtgtgatggcttatgcctttaatcccaacactatgaaaagccaaggcagggaaa-tgcttgagcccaacagtttgagaccagcctggtcaacatagcaagattc----------tgtctctacaaaaacgt--aaaaaa-----ttagttgggcatggtgtcacatgcttgcagtgccagctactcaggaggctgaggtgggaggattactt-agcccaggagttcatggct-----gcagtgagctatgatcatgtcactgtgctgcagcctgggtgac--agagtaacactccatatctcagaaa---aagaagtgagcataacgattcccctttgtgaatt--agactgaaagggttgcaaggtgacttccggtgtattgttaatttttgcctctatatgtgagcagttataaaagatatgttcagtatata
i calJac3.chr6              I 8921 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e chlSab2.chr29              21169540 2772 -  24206276 I

a score=1194448.000000
s hg38.chr15_KI270850v1_alt    410039 386 +    430880 aaaattcagtgaat-agtacactcatacttttctgtaagttaacttcaacaaCACAAGTTAAATCGTTGCCACTTAACTGTTACAGCCACACAGTAAGGTTCCATAAAAGTTTATTTTGTGGGAAACAAGACTTCATGAGAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAGTACAATAAGAAGTGAAACCATCTCAGTCAAAAATTCAACATTAGtcatgccagtaatcccagcaacttgggaggctgaggcaggaggatggcttgaggccaggagtctgagaccagcctgggcaacacagtgacaccatgtctctt
s panTro4.chr15              80192100 386 +  99548318 aaaattcagtaaat-agtacactcatacttttctgtaagttaacttcaacaaCACAAGTTAAATCGTTGCCACTTAACTGTTACAGCCACACAGTAAGGTTCCATAAAAGTTTATTTTGTGGGAAACAAGACTTCATGAGAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAGTACAATAAGAAGTGAAACCATCTCAGTCAAAAATTCAACATTAGtcatgccagtaatcccagcaacttgggaggctgaggcaggaggatggcttgaggccaggagtctgagaccagcctgggcaacacagtgacaccatgtctctt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10206953 386 +  10928107 aaaattcagtgaat-agtacactcatacttttctgtaagttaacttcaacaaCACAAGTTAAATCGTTATCACTTAACTGTTACAGCCACATAGTAAGGTTCCACAAAAGTTTATTTTGTGAGAAACAAGACTTCATGAGAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAGTACAATAAGAAGTGAAACCATCTCAGTCAAAAATTCAACATTAGtcatgccagtaatccaagcaacttgggaggctgaggcaggaggacggcttgaggccaggagtctgagaccagcctgggcaacatagtgacaccatgtctctt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17281624 386 - 121039945 aaaattcagtgaat-agtacactcatacttttctgtaagttaacttcaacaaCACAAGTTAAATCGTTATCACTTAACTGTTACAGCCACATAGTAAGGTTCCATAAAAGTTTACTTTGTGGGAAACAAGACTTCATGAGAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAATACAATAAGAAGTGAAACCATCTCAGTCAAAAATTCAACATTAGtcatgccagtaatcccagcaacttgggaggctgaggcaggaggactgcttgaggccaggagtctgagaccagcctgggcaacatagtgacaccatgtctctc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106749353 386 - 170124641 aaaattcagtgaacaagtacacttgtacttttctgtaagttaacttcaataaCACAAGTTAAATCGTTATCACTTAACTGTTACAGCCACATAGTAAGGTTTCACAAAAGTTTATTTTGTGGGAAACAAGACTTCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACGGTTTATGATCCAGTACAATAAGGAGTGAAACCGTCTCAGTCAAAAATTCAACATTAGtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgagaccatctttctt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108482317 386 - 171882078 aaaattcagtgaacaagtacacttgtacttttctgtaagttaacttcaataaCACAAGTTAAATCGTTATCACTTAACTGTTACAGCCACATAGTAAGGTTTCACAAAAGTTTATTTTGTGGGAAACAAGACTTCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACGGTTTATGATCCAGTACAATAAGGAgtgaaaccgtctcagtcaaaaattcaacattagtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgagaccatgtttctt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103249936 386 - 162156779 AAAATTCAGTGAACAAGTACACTTGTACTTTTCTGTAAGTTAACTTCAATAACACAAGTTAAATCGTTATCACTTAACTGTTACAGCCACATAGTAAGGTTTcacaaaagtttattttgtggGAAACAAGACTTCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TATGGTTTATGATCCAGTACAATAAGGAGTGAAACCGTCTCAGTCAAAAATTCAACATTAGtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgagaccatgtttctt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21172312 386 -  24206276 aaaattcagtgaacaagtacacttgtacttttctgtaagttaacttcaataaCACAAGTTAAATCGTTATCACTTAACTGTTACAGCCACATAGTAAGGTTTCACAAAAGTTTATTTTGTGGGAAACAAGACTTCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACAGTTTATGATCCAGTACAATAAGCAgtgaaaccgtctcagtcaaaaattcaacattagtcatgtcagtaatcccagcaacttgggaggctgagactggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgaggccatgtttctt
i chlSab2.chr29             I 2772 C 0
s calJac3.chr6               22319026 386 + 158406734 aaaattcagtggag-aatacattcatacttttctgcaagttaacttcagtaaCACAAGTTAAATTGTTATCACTTAACTGTTACAGCCATATAGTAAGGTTCCACAAGAGTTTATTTTGTGGAAAACAAGACTTCATGAGAGTAACTTCAATCATCTTCTGCAAGCTGGGACTGAATGTATTAAACTTGGTTTTGGAATAGCTTTTCAGACAATTTAGGGATGATACAGTTTATCATCCAGTACAATAAGAAGTGAAACCATCTTAGTCAAAAATTCAACATCAGtcatgccagtaatcccagcaatttgggaggctgaggcaggaggattgcttgaggacaggagtctgagagcagcctgggcaacataatgagaccttgtccctt
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=631932.000000
s hg38.chr15_KI270850v1_alt    410425 302 +    430880 ----------a---aaaaaaaaaaaaa--aATCCAggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggccaggagttcaagaccagcctgaccaatatggagaaaccccgtctctactaaa----aatacaaaattagccaggggtggtggcacatgcctgtaataccagctactcaggaggctgaggcaggagactcacttgaacccgggcagaggttgcggtgagccaagatcccgccattgcactccagcctgggaaacaagagtgaaactccatctc-----aga
s panTro4.chr15              80192486 302 +  99548318 ----------a---aaaaaaaaaaaaa--aaTCCAggccaggtgcagtggcccacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggccaggagttcaagaccagcctgaccaatatggagaaaccccgtctctactaaa----aatacaaaattagccaggggtggtggcacatgcctgtaataccagctactcaggaggctgaggcaggagactcacttgaacccgggcagaggttgcggtgagccaagatcccaccattgcactccagcctgggaaacaagagtgaaactccatctc-----aga
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10207339 298 +  10928107 -----------------aaaaaaaaaa--aaTCCAggccaggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggccaggagttcaagaccagcctgaccaatatggagaaaccctgtctctactaaa----aatacaaaattagccgggggtggtggcacatgcctgtaataccagctactcaggaggctgaggcaggagacttacttgaacccgggcagaggttgcggtgagccaagatcccgccattgcactccagcctgggaaacaagagcgaaaattcgtctc-----agg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17282010 309 - 121039945 tcaaaaaaaaa---aaaaaaaaaaaaa--aaTCCAggccaggcacagtggctcacgcctgtaatcacagcactttgggaggccgaggcgggcagatcacctgtgg---gatcctcaagaccagcctgaccaacatggagaaaccccgtctctactaaa----aatacaaaatgagccgggggtggtggcacatgcctgtaataccagctactcaggaggctgaggcaggagaatcagtggaacctgggcagaggttgcagtgagccaagatcccaccattgcactccagcctgggaaacaagagcgaaactccgtctc-----aga
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106749739 290 - 170124641 -------c------aaaaaaaaaaaaa--aaTCCAGGGCGGGTGCGGTG--------------tcgcagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaatacaatacaaaattagccgggcatggtggcgcatgcctgtaatactagctactcaagagcctgaggcaggagaatcacttgaacccgggcagagggtgcagtgagccaagatcctgccattgcactccaatctgggcaacaagagccaaactcagtctc-------a
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108482703 303 - 171882078 -------taaaaagaaaaaaaaaaaaa--aATCCAGGGCGGGTGCGGTG--------------tcgcagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaatataatacaaaattagccgggcatggtggcgcatgcctgtaatactagctactcaagagcctgaggcaggagaatcacttgaacccgggcagaggttgcagtgagccaagatcccgccattgcactccaacctgggcaacaagagccaaactcagtctcaaaaaaaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103250322 299 - 162156779 -------taaa---aaaaaaaaaaaaa--aatccagggcgGGTGCGGtg--------------tcgcagcactttgggaggccaaggcgggcaaatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaatataatacaaaattagccgggcatggtggcgcatgcctgtaatactagctactcaagagcctgaggcaggagaatcacttgaacctgggcagaggttgcagtgagccaagatcccgctattgcactccagcctgggcaacaagagccaaactcagtctc-aaaaaaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21172698 292 -  24206276 -------taaa---aaaaaaaaaaaaatcaatccagggcgggtgCGGTG--------------tcccagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaa----aatacaaaattagacgggcatggtggcgcacgcctgtaatactagctactcaagagcctgaggcaggagaatcacttgaacccgggcagaggttgcagtgagccaagatcccgccattgcactccagcctgggcaacaagagccaaactcagtctc------aa
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22319412   0 + 158406734 C
e canFam3.chr3               54475333 4383 +  91889043 I

a score=1307773.000000
s hg38.chr15_KI270850v1_alt    410727 438 +    430880 aaaaaaaaaaaaaaa-------------TCTAACATCAGGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTCAGCAGTCTATTTAggtctgagagctggttacatggttgtgttcagtttgggaaagttggagctcttcgcctatgatacagcatgtactttcctgtatgtgtattatatttcagtttttaaaaactgttaaataaaCATATCAGTGCTAAACCTTACTTAGGACTGCTTTGGCTAGTCAATTCCTTTCTAAACCTCCAAGCTATTTTAACTGATTATTGAGAAATGGCATCTCAGTGAATTAATATGAAACTGCTCCTCCAATCATTGCCTCCATCC----TAAATATTAAGTCTCCCTACCCATATAGCAGTTAAGACATCCCTTAATGATGTTTCACCACTTTTCACATCTTTACAGACACCGTTACTAACAACTC
s panTro4.chr15              80192788 437 +  99548318 aaaaaaaaaaaaaaa------------aTCTAACATCAGGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTCAGCAGtctatttaggtctgggagctggttacatggttgtgttcagtttgggaaagttggagctcttcgcctatgatacagcatgtactttcctgtatgtgtattatatttcagtttttaaaaactgttaaataaaCATATCAGTGCTAAACCTTACTTAGGACTGCTTTGGCTAGTCAATTCCTTTCTAAACCTCCAAGCTATTTTAACTAAttattgagaaatggcatctcagtgaattaatatgaaactgctcctccaatcattgcctccatcc----taaatatt--gtctccctgcccatatagcagttaagacatcccttaatgatgtttcaccacttttcacatctttacagacaccgttactaacaactc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10207637 451 +  10928107 aaaaaaaaaaaaaaaaaaaaaaaaaaaaTCTAACATCAGGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTCAGCAGTCTATTTAgatctgggagctggttacacggttgtgttcagtttgggaaagttggagctcttcgcctatgatacagcatgtactttcctgtatgtgtattatatttcagtttttaaaaactgttaaataaaCATATCAGTCCTAAACCTTACTTAGGACTGCTTTGGCTGATCAATTCCTTTCTAAATCTCCAAGCTATTTTAACTGATTATTGAGAAATGGCATCTCGGTGAGTTAATATGAAACTGCTTCTCCAATCATTGCCTCCATCC----TAAATATTAAGTCTCCCTACCCATATAGCAGTTAAGACGTACCTTAATGATGTTTCACCACTTTTCACATCTTTACAGACACTGTTACTAACAACTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17282319 437 - 121039945 aaaaaaaaaaaaaaa------------aTCTAACATTGGGCTACAACTATATAATTCTTTGGTCCTACATTAAAAGTCAGCAGtctatttaggtctgggagctggttacatggttgtgttcagtttgggaaagttggagctctttgcctatgatacagcatgtaccttcctgtatgtgtattatatttcagtttttaaaaaCTGTTAAATCAACATATCAGTCCTAAACCTTACTTAGGACTGCTTTGGCTAATCAATTCTCTTCTAAACCTCCAAGCTATTTTAACTGGTTATTGAGAAATGGCATCTCGGTGAGTTAATATCAAACTGTTCCTCTAATCATTGCCTCCATCC----TAAATATT--GTCTCCCTACCCATATAGCAGTTAAGACATCCCTTAATGATGTTTCACCACTTTTCACATCTTTACAGACACTGTTACTAACAACTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106750029 437 - 170124641 aaaaaaaaaaaaaaa------------TTCCAACATCGGGCTACGACTATACAATTCTTTGGTCCTACATTAAAAGTCTGCAAtctatttaggtctgggagctggttacatggttgtgttcattttgggaacgttggagctcttcacctatgatacagcatgtactttcctgtatgtatattatatttcagtttttaaaaaCTGTTAAATCAACATATCAGTCCTAAACCTTACTTAGGACTGCTTTGACTAATCAATTCCTTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcatctcggtgagttaacatgaaactgttcctccaaccattgcctccagcc----taaatatt--gtctccctacccatatagcagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108483006 437 - 171882078 aaaaaaaaaaaaaaa------------TTCCAACATCGAGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTCTGCAATCTATTTAggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgatacagcatatactttcctgtatgtatattgtatttcagtttttaaaaactgttaaaTCAACATATCAGTCCTAAACCTTACTTAGGACTGCTTTGACTAATCAATTCCTTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcatctcggtgagttaacatgaaactgttcctccaatcattgcctccagcc----taaatatt--gtctccctacccatatagcagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103250621 437 - 162156779 aaaaaaaaaaaaaaa------------atccaacatcgGGCTACGACTATACAATTCTTTGGTCCTACATTAGAAGTCTGCAATCTATTTAGGTCTGGGAGCTGGTTACATGGTTGTGTTCATTTTGGGAAAGTTGGAGCTCTTCACCTATGATACAGCATGTACTTTcctgtatgtatattatatttcagtttttaaaaactgttaaatcAACATATCAGTCCTAAACCTTACTTAGGACTGCTTTGACTAATCAATTCCTTTCTAAACCTCCAAGCTATTTTAACTGGTTATTGAGAAATGGCATCTCGGTGAGTTAACATGAAACTGTTCCTCCAATCATTGCCTCCAGCC----TAAATATT--GTCTCCCTACCCATATAGCAGTTAAGATGTCCCTTAATAATGTTTCACCACTTTTCACATCCTTACAGACACTGTTAGTAAAAACTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21172990 437 -  24206276 aaaaaaaaaaaaaaa------------aTCCAACATCGGGCTACGACTATACAATTCTTTGGTCCTACATTAAAAGTCAGCAATCTATTTAggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgatacagcatgtactttcctgtatgtatattatatttcCGTTTTTAAAAACTATTAAATCAACATATCAGTCCTAAACCTTACTTAGGACTGCTTTGACTAATCAATTCCTTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcatctcggtgagttaatatgaaactgttcctccaatcattgcctccagcc----taaatatt--gtctccctacctatataacagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22319412 437 + 158406734 -aaaaaaaaaaaaaa------------aTCCACCATCAAGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTTAGCAGTCTAATTAggtctgggagttggttacatgattgtgttcagtttgggaacattggagctcttcacatgtgatacagcatgtactttactgtatgtgtg-tatatttcaGTTTTTAAAAACTGTTAAATCAACATATCAGTTCTCTACCTTACTTTGAACTGCTTTGGCTAATCAATTCCTTTCTAAGCCTCCAAGCTGTTTTAACTGG---TTGAGAAATGGCATCTCAGTGAGTTAACATTAAATTTTTCCTTCAATCATCGTCACCAGGCATATTAAATATTAAGTCTCCCTACCCACATAGCAG-TAAGATGTCCCTTAATGATGTTTCACCACTTTTCAGATCTTTACAGACACTGTTACTAAAAACTC
i calJac3.chr6              C 0 I 301
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=153824.000000
s hg38.chr15_KI270850v1_alt    411165 64 +    430880 AACACATTAATGCTTAAATCACATGTCCATTTGCAGCCCATTTTCTCCATTCCTCACAGATTCC
s panTro4.chr15              80193225 64 +  99548318 aatgcattaatgcttaaatcacatgtccatttgcagcccattttctccattcctcacagattcc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10208088 64 +  10928107 GATGCATTAATGCTTAAATCACATGTCCATTTGCAGCCCATTTTCTCCATTCCTCACAGATTCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17282756 64 - 121039945 GATGCATTAATGCTTAAATCACATGTCCATTTGCAGCCCATTTTCTCCATTCCTCACAGATTCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106750466 62 - 170124641 GACGCATTAATGCTTAAATCACATGTCCATTTGCAGCCCATTTTCTCCATTCCT--CAGATTCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108483443 62 - 171882078 gacgcattaatgcttaaatcacatgtccatttgcagcccattttctccattcct--cagattcc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103251058 62 - 162156779 GACGCATTAATGCTTAAATCACATGTCCATTTGCAGCCCATTTTCTCCATTCCT--CAGATTCC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21173427 62 -  24206276 gacgcattaatgcttaaatcacatgtccatttgcagcccattttctccattcct--cagattcc
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22319849 301 + 158406734 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=9062720.000000
s hg38.chr15_KI270850v1_alt    411229 3076 +    430880 AAAAGGTCTATGGCTTAAAGGACTAGGGAATGTGGAGAGGGCCCTCTAGGTGGCAGACATCCCTGTCAtctccactagacagttgttggggtaggaaatccagctctggcctgaccttcc-agccccaccctagctcctaccaccC--ATCATGCAACAAGGGccttcttggtggggtactagcccaaaagctcaggcctttgcaaaacc----------------ctcttaa--------------------accacagcaagtcataactttcttgtatataaacggggaattcagatgctccagcta----ctctttccctgccccgccacatctctctccagagtcgcactctatcaccca-ggctggaatacag-agtgcaacctcggctcactgcaacctccgactccccggttcaagcaattctcctgcctcagcctccc---------ggactacaggcacgcaccatcatgcccggttaatttttctatttttaatagagacaaggtttcgccatgttggtcaggctggtctcaaactcctgacctcaagtgatctgcccacctcggcctcccaaagtgctgagattactacaggcatgagtcactgcacccagcccacatctc----ttcttcattaatttctattcagtcagggatagacagcaagtcagctgtctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatacttctcttggaagaccctcttgcttggcttaaatgacaaagccacatcctaccccaccctcctccacggacggggacggaatcacttcaaatgctacccccctccttatgtgatcctctttataagccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgaccttttggtaagccctggcgggaggtatctggtcccacctcttagggattctcattacaccacaggtcatttaacagctctttagtctcagctttgggccctaatggccaattctggagcaacagaaaaaaaa--taatctactcaacatccagttaAGAC--TAAAGTAATTTTAATTCTCTTCAAAGCCTATTTCAAATGCTGCTTTAACCAGAAGTGTTTCCTAGTTCTCAAACCAAACC----AACCTCTTCCTGACCCTATCACAGCACTTTTCCAATGATGCTTTATCAACTGGGTTATGCATGCAACTAGCAATGTG-AAACACTGTGTTAGGAAACACACCATTTGAAAATTTATTACAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGCATACAGAAAAAAATTACCCAgccaggtgcggtggctcacgcctgtaatcccagcagtttgggaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaacccccatctctactaa-taca-aaaattagccaggcgtggtggggcatacccgtaatcccagttactcaggagactgaggcaggagactcacttggacccgggagttggaggttgcagtgagccgagatcacgccactgcactccagcctggacaacagagcgggactccgtctcagg----aaaaaaaaaTTACCCATAATTTTTTTCTGCTATTACCTACCTTcactgtcacatttatatcattccagtgtttttctatgcatatatatttaaggccattctttttacacttt------------------tttttacacctgttttacacttcgc--tttttttcatttcagacactgtagttatctttctttgccattaagtagtcttctataaacattatattttatggtacatgatattccatggtatagctctcctatcatttacttaacattctgttgccaaattgtccctagttataatgctgtccataaacaatcttaggttttcataattctgattatttccttcaaggaacaaaattacttttgatcagaagctacaagtttgggttatttcttaaggttcttcataGAAAAATATATATCCTAGTTTACTTTCTCATTAATCACAAGGTTGGTATTTTTGCTGGTGACCACAG-AAAAAATGCTCTCTGCTGTAGGCCAGGCATCCTTGTTTCACCATTCGAGAATACAGGCCCACAGCCCTGAGCTGAATCACAAGTGGAAAGCAGAGAGAGTTCACCACACATGGGAGGGGCTGGGTATACGTGAAAGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTAGAATTCCTTGAGTTCCCTTAAATCTGCAGTattgtcttaacatctgagccccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctgcagctgagaaaactgacctctttatctcactgcccagggtcaAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGATCTTCCTCCTGCTTCTCTTAGAATGTTCTAA-GAGGCTGAGAAGGAGCTGAAGAGCCCGAGAAGTCTTTAACTTGTACTTCGGCTACTGACCCTGGGCAGAGTATAATGGTAAC-AACATCGTCACCAGACCCTGGCATCTTACCAGTGAAGTCACTGGGCTCCCTGGACAGCTGCAAACATACACTCTGGAAAGCTCCTCTCCCATCAATCATGGGTCC-TTTCCCTGAA---GTCCAACACCTAGTATTAGCTGAAAAATATTTTCCTGTAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGGTTTAAGTCATTGTTGAATTGTTGAGTGTCATACtttttttttttttggcagaggtgggcaggggtcctgctctgtcacccaggctg--tagtacagtgccacaaccacagttcaccgcagtctcgacctcccaggctcaagtgatcctcccacttcaccctccaagtagctgcaactaggtgcacacc-ccacatctggctaatttttcta--tttttttgtaaacggggtttcaccatgttgcccaggctggtctcaaactcctggcttcaagtgatccacctgctccagccttaattaca-ggcttaagtcaccatgcctggccTGTCATTCTTACTGGGACATAATACATGCAATTTTCTCAAAGGAGAAAAACAGAACATGTATTAGAACTAAGAAAGATG
s panTro4.chr15              80193289 3076 +  99548318 aaaaggtctatggcttaaaggactagggaatgtggagagggcCCTCTAGGTGGCAGACATCCCTGTCAtctccactagacagttgttggggtaggaaatccagctctggcctgaccttcc-agccccaccctagctcctaccaccCCCATCATGCAACAAGGgccttcttggtggggtactagcccaaaagctcaggcctttgcaaaacc----------------ctcttaa--------------------accacagcaagtcataactttcttgtatacaaacggggaattcagatgctccaggta----ctctttccccgccccgccacatctctctccagagtcgcactctatcaccca-ggctggaatacag-agtgcaacctcggctcactgcaacctccaactcccgggttcaagcaattctcctgcctcagcctccc---------agactacaggcacgcaccatcatgcccggttaatttttctatttttaatagagacaaggtttcgccatgttggtcaggctggtctcaaactcctgacctcaagtgatctgcccacctcggcctcccaaagtgctgagattactacaggcatgagtcactgcacccagcccacatctc----ttcttcattaatttctattcagtcagggacagacagcaagtcagttgtctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatacttctcttggaagaccctcttgcttggcttaaatgacaaagccacatcctaccccaacctcctccacggacggggatggaatcacttcaaatgctaccccc-tccttatgtgatcctctttataagccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgaccttttggtaagccctggcgggaggtatctcgtctcacctcttagggattctcattacaccacaggtcatttaacagctctttagtctcagctttgggccctaatggccaattctggagcaacagaaaaaaaa---aatctactcaacatccagttaAGAC--TAAAGTAATTTTAATTCTCTTCAAAGCCTATTTCAAATGCTGCTTTAACCAGAAGTATTTCCTAGGTCTCAAACCAAACC----AACCTCTTCCTGACCCTATCACAGCACTTTTCCAATGATGCTTTATCAACTGGGTTATGCATGCAACTAGCAATGTG-AAACACTGTGTTAGGAAACACACCATTTGAAAATTTATTACAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGCATACAGAAAAAAACTACCCAgccaggtgcggtggctcatgcctgtaatcccagcagtttgggaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaacccccatctctactaa-taca-aaaattagccaggcgtggtggggcatacccgtaatcccagttactcaggagactgaggcaggagactcacttggacccgggagttggaggttgcagtgagccgagatcacgccactgcactccagcctggacaacagagcgggactccgtctcagg----aaacaaaaaTTACCCATAATTTTTTTCTGCTATTACCTACCTTcactgtcacatttatatcattccagtgtttttctatgcatatatatttaaggccattctttttacacttt---------------gcttttttacacctgtcttacacttcgc--tttttttcatttcagacactgtagttatctttctttgccattaagtagtcttctataaacattatattttatggtacatgatattccatggtacagctctcctatcatttacttaacattctgttgccaaattgtccctagttataatgctgtccataaacaatcttaggttttcataattctgattatttccttcaaggaACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTTCTCATTAATCATAAGGTTGGTGTTTTTGCTGGTGACCACAG-AAAAAATGCTCTCTGCTGTAGGCCAGGCATCCTTGTTTCACCATTCGAGAATACAGGCCCACAGCCCTGAGCTGAATCACAAGTGGAAAGCAGAGAGAGTTCACCACACAAGGGAGGGGCTGGGTATACGTGAAGGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTAGAATTCCTTGAGTTCCCTTAAATCTGCAGTattgtcttaacatctgagccccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctgcagctgagaaaactgaCCTCTTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCAAATTTCCTCAAGATCTTCCTCCTGCTTCTCTTAGAAGGTTCTAA-GAGGCTGAGAAGGAGCTGAAGAGCCCGAGAAGTCTTTAACTTGTACTTCGGCTACTGACCCTGGGCAGAGTATAATGGTAAC-AACATCGTCACCAGACCCTGGCATCTTACCAGTGAAGTCACTGGGCTCCCTGGACAGCTGCAAACACACACTCTGGAAAGCTCCTCTCCCACCAATCATGGGTCC-TTTCCCTGAA---GTCCAACACCTAGTATTAGCTGAAAAATATTTTCCTGTAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGGTTTAAGTCATTGTTGAATTGTTGAGTGTCATACtttttttttt---ggcagaggtgggcaggggtcctgctctgtcacccaggctg--tagtacagtgccacgaccacagttcactgcagcctcgacctcccaggctcaactgatcctcccacttcaccctccaagtagctgcaactaggtgcacacc-ccacatctggctaatttttcta--tttttttgtaaacgggatttcaccatgttgcccaggctggtctcaaactcctggcttcaagtgatccacctgctccagccttaattaca-ggcttaagtcaccatgcctggccTGTCATTCTTACTGGGACATAATACATGCAATTTTCTCAAAGGAGAAAAACAGAACATGTATTAGAACTAAGAAAGATG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10208152 3088 +  10928107 AAAAGGTCTATGGCTTAAAGAACTAGGGAATGTGGAGAGGGCCCTTTAGGTGGCAGACATCCCTGTCATCTCCACTAGACAGTTGTTGGGGTAGGAAATCCAGCTCTGGCCTGACCTTCCAAGCCCCACCCTAGCTCCTACCAAC---ATCATGCAACAAGGGCGTTCTTGGTGGGGTACTAGCCCAAAAGCTCAGGCCTTTGCAAAACC----------------CGCTTAA--------------------ACCACAGCAAGTCACAACTTTCTTGTATATAAACGGGGAATTCAGATGCTCCAGCTA----CTCTTTCCCCATCCCGCGACATCTCTCTCcagagtcgcactctatcaccca-ggctggaatacag-agtgcgacctcggctcactgcaacctccaactcctgggttcaagcaattctcctgcctcagcctccc---------ggactacaggcacgcaccatcatgcccggttaatttttgtatttttaatagagacaaagtttcgccatgttggtcaggctggtcttgaactcctgacctcaagtgatctgcccacctcggcctcccaaagtgctgagattactacaggcatgagtcactgcacccagccCACATCTC----TTCTTCATTAACCTCTATTCAGTCAGGGACAGACAGCAAGTCAGCTGTCTAACCAGGGGTTCAACCTTGTCTTC-TTTCTTGGAAGCATTCTCCATCTACACAAATACTTCTCTTGGAAGACCCTCTTGCTTGGCTTAAATGACAAAGCCACATCCTACCCCACCCTCCTCCACGGACGGGGACGGAATCACTTCAAATGCTACCCCC-TCCTTATGTGATCCTCTTTATAAGCCAGGGAAGGGTTGAGATAATGTTTGTGGTAGGAGGGACAGCTCTGTGACCCTTTGGTAAGCCCTGGCAGGAGGTATCTGGTCCCACCTCTTAGGGATTCTCATTACACCACAGGTCACTTAACAGCTCTTTATTCTCAGCTTTGGGCCCTAATGGCCAATTCTGGGGCAACAGAAAAAAAA--TAATCTACTCAACATCCAGTTAAGAC--TAAAGTAATTTTAATTCTCTTCAAAGCCTATTTCAAATGCTGCTTTAACCAGAAGTGTTTCCTAGTTCTCAAACCAAACC----AACCTCTCCCTGACCCTATCACAGCACTTTTCCA---CTGCTTTATCAACTGGGTTACGCATGCAACTAGCAATGTG-AAACACTGTGTTAGAAAACACACCATTTGAAAATTTATTACAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGCATACAGAAAAAGATTACCCagccagttgcggtggctcacgcctataatcccagcagtttgggaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ctccatatctactaa-taca-aaaattagccaggcgtggtggggcatacccgtaatcccagttactcaggagactgaggcaggagactcacttggacccgggagttggaggttgcagtgagccgagatcacgccactgcactccagcctggacaacagagcgggactccgtctcagg----aaaaaaaaaTTACCCATAATTTTTTTCTGCTATTACCCACCTTcactgtcacatttatatcattccagtgtttttctatgcatatatatttaagaccattctttttacactttgcttttttacattttgcttttttacacctgtcttacactttgctttttttttcatttcagacactgtagttatctttctttgccattacgtagtcttctataaacattatattttatggtacatgatattccatggtatagctctcctatcatttacttaacattctgttgccaaattgtccctagttataatgctgtccataaacaatcttaggttttcataattctgattatttccttcaaggaacaaaattacttttgatcagaagctacaagtttgggttatttcttaaggttcttcataGAAAAATATATATCCTAGTTTACTTCCTCATTAATCACAAGGTTGGTATTTTTGCTGGTGAACACAG-AAAAAATGCTCTCTGCTGTAGGCCAGGCATCCTTGTTTCACCATTTGAGAATACAGGCCCACAGCCCTCAGCTGAATTACAAGTGGAAAGCAGAGAGAGTTCACCACACAAGGGAGGGGCTGGGTATATGTAAAGGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTACAATTTCTTGAGTTACCTTAAATCTGCAatattgtcttaacatctgagccccataagaaacctatgaggcaggttgagcaggtaccattctgtcctacagctgagaaaactgacctctttatctcactgcccagggtcaAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGATCTTCCTCCTGCTTCTCTTAGAAGGTTCTAA-GAGGCTGAGAAGGAGCTGAAGAGCCCGAGAAGTCTTTAACTTGTACTTCGGCTACTGACCCTGGGCAGAGTATAATGGTAACAAACATCCTCACCAGACCCTGGCATCTTACCAGTGAAGTCACTGGGCTCCCTGGACAGGTGCAAACATACACTCCGGAAAGCTCCTCTCCCATCAATCATGGGTCCTTTTCCCTTAA------CAACACCTAGTATTAGCTGAAAAATATTTTCCTGTAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGGTTTAAGTCATTGTTGAATTGTTGAGTGTCATACtttttttttt--tggcggaggtggacaggggtcctgctctgtcacccaggctg--tagtacagtgccacgaccacagttcactgcagcctcgacctcccaggctcaagtgatcctcccacctcaccctccaagtagctgcaactaggtgcacacc-ccacatctggctaatttttcta--tttttttgtagacagggtttcaccatgttacccaggctggtctcaaactcctggcttcaagtgatccacctacttcagccttaattaca-ggcttaagtcaccacgcctggccTGTCATTCTTACTGGGACATAATACATGCAATTTTCTCAAAGGAGAAAAACAGAATATGTATTAGAACTAAGAAAGATG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17282820 3082 - 121039945 AAAAGGTCTATGGCTTAAAGGACTAGGGAATGTGGAGACGGCCCTTTAGGTGGCAGGCATCCCTGTCAtctccactagaca---gttggggtaggaaatccagctctggcctgaccttcc-agccccaccctaactcctgccaccC--ATCATGCAACAAGGgccttcttggtggggtactagcccaaaagctcaggcctttgcaaaacc----------------ctcttaa--------------------accacagcaagtcacaactttcttgtatataaacgggcaattcagatgctccagctac--tctctttccctgccccgccacatctctctccagagtcgcactctatcaccca-ggctggaatacag-agtgcgaccttggctcactgcaacctccgactcccgggttcaagcaattctcctgcctcagcctccc---------ggactacaggcacgcaccatcatgcccggttaattttggtatttttaatagagacaaggtttcgccatgttggtcaggctggtctcaaattcctgacctcaagtgatctgcccgcctcggcctcccaaagtgctgagattactacaagcatgagtcactgcacccagcccacatctc----ttcttcattaacctctattcagtcagggacagacagcaagtcagctgcctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatacttctcttggaagaccctcttgcttggcttgaatgacaaagccacatcctaccccaccctcctccacggacagggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctttataagccagggaagggttgagctaatgtttgtggtaggagggacagctctgtaaccttttggtaatccctggcaggaggtatctggtcccacctcttagggattctcattataccacaggtcacttaacagctcttcattctcagctttgggccctaatggccaattctggggcaacagaaaaaaaa--taatctactcaacatccagttaAGAC--TAAAGCAATTTTAATTCTCTTCAAAGCCTATTTCAAACGCTGCTTTAACCAGAAGTGTTTCCTAGTTCTCAAACCAAACC----AACCTCTCCCTGACCCTATCACAGCACTTTTCCAATGATGCTTTATCAACTGGGTTATGCATGCAACTAGCAATGTGAAAACACTGTGTTAGGAAACACACCATTTGAAAATGTATTACAAAACATTTGTTTTAGAAGAACTAGTGAGAAAAAGTATACAGAAAAAAATTACCCAgccgggtgtggtggctcatgcctataatcccagcagtttgggaggccaaggcaggtggattacttgagatcaggagttcaagatcagcctggccaatgtggtgaaa-ccccatctctactaa--aca-aaaattagccaggcgtggtggggcatacccgtaatcccagttactcaggagac--aggtaggagactcacttggacccaggagttggaggttgcagtgagccgagatcacgccgctgcactccagcctggacaacagagcgggactctgtctcagg---aaaaaaaaaaTTACCCATAATTTTTTTCTGCTATTACCCACCTTcactgtcacatttatatcattccagtgtttttctatgcatatatatttaaggccattctttttacactttgcttttttacattttgcttttttatacctgtcttacactttgc--tttttttcatttcagacactgtagttatctttctttgccattaagtagtcttctataaacattata-tttatggtacatgatattccatggtataggtctcctatcatttacttaacattctgttgccaaattgtccctagttataatgctgtccataaacgatcttaggttttcataattctgattacttccttcaaggaACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAATCACAAAGTTGGTATTTTTGCTGGTGAACACAGAAAAAAATGCTCTCTGTTGTAGGCCAGGCATCCTTGTTTCACCATTCGAGAATACAGGCCCACAGCCCTGAGGTGAATCACAAGTGGAAAGCAGAGAGAGTTCACCACACAAGGGAGGGGCTGGGTATATGTGAAGGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTACAATTCCTTGAGTTCCCTTAAATCTGCAGTAATGTCTTAAcatctgagccccataagaaacctgtgaggcaggctgagcaggtaccattctgtcctacagctgggaaaactgaCCTCTTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGATCTTCCTCCTGCTTCTCTTAGAAGATTCTAA-GAGGCTGAGAAGGAGATGAAGAGCCCGAGAAGTCTTTAACTCATACTTTGGCTACTGACCCTGGGCAGAGTATAATGGTAAC-AACATCCTCACCAGACTCTGGCATCTTACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACACTCCTGAAAGCTCCTCTCCCACCAATCATGGGTCC-TTTCCCTTAA---GTCCAAC-CCTAGTATTAGCTGAAAAATATTTTCCTGTAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGGTTTAAGTC--------ATTGTTGAGTGTCATAttttttttttttttggcagaggtgggcaggggtcctgctctgtcacccaggctg--tagcacagtgccacgaccacagttcactgtagcctcgacctcccaggctcaagtgatcctcccacctcaccctccaagtagctgcaactaggtgcacacc-ccacatccggctaatttttcta-ttttttttgtagacggggtttcaccatgttgcccaggctggtctcaaactcctggcttcaagtgatccacctgctccagccttaattaca-ggcttaagtcaccacacttggccTGTCATTCTTACTGGGACATAATACACGCAATTTTCTCAAAGGAGAAAAACAGAACATGTATTAGAACTAAGAAAGATG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106750528 3092 - 170124641 AAAAGGTCTATGGCTTAAAGGAGTAGGGAATGTGGAGAGGGCCCTCTAGATGGCAGACATCCCTCTCAtctccactggacagttgttggggtaagaaatccagctctggccttaccttcc-agccccaccctagctcccaccaccc--accatgcaacaagggccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaacc----------------ctcttaa--------------------accacagcaaatcacaactttcttg-atataaacagagaattcagatgctccagctac--tctctttccccaccccaccacatctctctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgtaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------cgactacaggcacacaccatcatgcccagttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtcactgcacccagcccacatctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctacacaaatatttctcttggaagaccctcttgcttggcttgaacaacaaagccacatcctatcccaccctcctccacagac-gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctttataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgacctttaggtaagccctggcaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaacagaaaaaaaaaataatctactcaacctccagttaAGAC--TAAAGTAATTTTAATTCTCTTCAAAGCCTATTTCAAATGCTGCTTTGACCAGAAGTGTTTCCTAGTTCTC-AACTAAACCTGATAGGGTCTCCCTGACCCTATCACAGCACTTTTCCAATGATGTTTTACCAACTGGGTTATGCATGCAACTAGCAATGTG-AAACACTGTGTTAGGATATACGCCATTTGAAAATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTATACAGAAAAAAATTACCCAgccaggtgcggtggctcatgtctgtaatcccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa-taca-aaaattagccaggcatggtggcgcacacctgtaatcccagttactcaggagaccgacgcagaagaatcacttggacccgggagtcggaggttgcagtgagccgagatcacgccactgcacttcagcccggacaacagagcgggattccgtctcagg---aaaaaaaaaaTTACCCATAATTTTCTTCTG-TATTACCCACCTTCACTGTCACATTTATACCACTTCAGGGTTTTTCTATGCATATATACTTAAGGCCATTCTTTTGACACTTTGCTTTTATACATTTTGCTTTTTTACACCTgtcttacactttg---tttttttcatttcagacactgtagttatctttctttgccattaagtagtcttctacaaacattatattttatggtacaggatactccatgatacaactttcctatcatttacttaacattctgttaccaaattgtccctagttataatgctgtccataaacaatcttaggttttcataattctgattatttccttcaggtaaCAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAGGTTGGTATTTTTGCTGGTTAACACAG-GAAAAATGCTCTCTACTGTAGGCCAGGCATCCTTGTTTCACCACTTGAGAACACAGGCCCACAGCCCTGAGCTGAATCACAAGTGGAAAGC--AGAGAGCTGACCACACAAGGGAGGGGCTAGGTATATGTGAAGGGCTCAAAAACATCAGCTACATCTGACAGAAACCTTTCCTACAATCCCTCGAGTTTCCTTAAATCTGCAGTGTTGTCTTAAcatctgactcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaactgaCCT-TTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGATCTTCCTCCTGTTTCTCTTAGAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCCAAGAAGTCTATAACTTGTACTTCAGCTACTGACCCTGGGCAGAGTATAATGGTAACAAACATCCTCACCAGACCCCGGCATCTTACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACATTCCTGAAAGCTCCTCTCCCATCAATCATGGGTCC-TTTCCCTTAG---GTCCAACACCTAGTATTAGCTGAAAAATATTTTCCTGTAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGGTTTAAGCCATTGTTGAATTGTTGAGTGTCATGCTTTTATTTTT--TGGTGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacctcccagactcaagtgatcttcccacctcattctccaagtagctgcaactaggtgcacaca-ccacattctgctaatttttctatttttttttgtagacagggtttcactatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcatcatgcctggccTGTCATTCTTACTGGGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAGTAGAACTAAGAAAGATG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108483505 3089 - 171882078 aaaaggtctatggcttaaaggagtagggaatgtggagagggcCCTCTAGACGGCAGACATCCCTCTCAtctccactggacagttgttggggtaggaaatccagctctggccttaccttcc-agccccaccctagctccCACCACCC--ACCATGCAACAAGGgccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaacc----------------ctcttaa--------------------accacagcaaatcacaactttcttg-atataaacagagaattcagatgctccagctac--tctctttccccaccccaccacatctctctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgtaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------ggactacaggcacacaccatcatgcccagttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtcactgcacccagcccacatctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctacacaaatatttctcttggaagaccctcttgcttggcttgaacaacacagccacatcctatcccacccttctccacagac-gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctttataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgacctttaggtaagccctggcaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaacagaaaaaaaaaaaaatctactcaacctccagttaAGAC--TAAAGTAATTTTAATTCTCTTCAAAGCCTATTTCAAATGCTGCTTTGACCAGAAGTGTTTCCTAGTTCTC-AACTAAACCTGATAGGGTCTCCCTGACCCTATCACAGCACTTTTCCAATGATGTTTTACCAACTGGGTTATGCATGCAACTAACAATGTG-AAACACTGTGTTAGGATATACGCCATTTGAAAATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTATACAGAAAAAAATTACCCAgccaggtgcggtggctcatgtctgtaatcccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa-taca-aaaattagccaggcatggtggcgcacacctgtaatcccagttactcaggagaccgacgcagaagaatcacttggacccgggagtcggaggttgcagtgagccgagatcacgccactgcacttcagcctggacaacagagcgggattccgtctcagg---aaaaaaaaaaTTACCCATAATTTTTTTCTG-TATTACCCACCTTCACTGTCACATTTATACCACTTTAGGGTTTTTCTATGCATATATACTTAAGGCCATTCTTTTGACAC-TGGCTTTTATACATTTTGCTTTTTTACACCTgtcttacactttg---tttttttcatttcagacactgtagttatctttctttgccattaagtagtcttctacaaacattatattttatggtacaggatactccatgatacaactttcctatcatttacttaacattctgttaccaaattgtccctagttataatgctgtccataaacaatcttaggttttcataattctgattatttccttcaggtaaCAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAGGTTGGTATTTTTGCTGGTTAACACAG-GAAAAATGCTCTCTACTGTAGGCCAGGCATCCTTGTTTCACCACTTGAGAACACAGGCCCACAGCCCTGAGCTGAATCACAAGTGGAAAGC--AGAGAGCTGACCACACAAGGGAGGGGCTAGGTATATGTGAAGGGCTCAAAAACATCAGCTACCTCTGACAGAAACCTTTCCTACAATCCCTCGAGTTTCCTTAAATCTGCAGTGTTGTCTTAAcatctgactcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaactgaCCT-TTTATCTCACTGACCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGATCTTCCTCCTGTTTCTCTTAGAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCCAAGAAGTCTATAACTTGTACTTCAGCTACTGACCCTGGGCAGAGTATAATGGTAAC-AACACCCTCACCAGACCCCGGCATCTTACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACATTCCTGAAAGCTCCTCTCCCATCAATCATGGGTCC-TTTCCCTTAG---GTCCAACACCTAGTATTAGCTGAAAAATATTTTCCTGTAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGGTTTAAGCCATTGTTGAATTGTTGAGTGTCATGCTTTTATTTTT--TGGTGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacctcccagactcaagtgatcttcccacctcattctccaagtagctgcaactaggtgcacaca-ccacattctgctaatttttcta-ttttttttgtagacagggtttcactatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcatcatgcctggccTGTCATTCTTACTGGGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAGTAGAACTAAGAAAGATG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103251120 3085 - 162156779 AAAAGGTCTATGGCTTAAAGGACTAGGGAATGTGGAGAGGGCCCTCTAGATGGCAGACATCCCTCTCATCTCCACTGGACAGTTGTTGGGGTAGGAAATCCAGCTCTGGCCTTACCTTCC-AGCCCCACCCTAGCTCCCACCACCC--ACCATGCAACAAGGGCCTTCTTGGTGGGGTACCAGCCCAAAAGCTCAGGCCTTTGCAAAACC----------------CTCTTAA--------------------ACCACAGCAAATCACAACTTTCTTG-ATATAAACAGAGAATTCAGATGCTCCAGCTAC--tctctttccccaccccaccacatCTCTctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgcaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------ggactacaggcacacaccatcatgcccagttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtcactgcacccagcccacatcTCTTAATTTCTCATTAATCTCTATTCAGTCAGGGACAGACAGCAAGTCAGTTGTCCAACCAGGGGTTCAACCTTGTCTTC-TTTCTTGGAAGCATTCTCCATCTACACAAATATTTCTCTTGGAAGACCCTCTTGCTTGGCTTGAACAACAAAGCCACATCCTATCCCACCCTCCTCCACAGAC-GGGAGGGAATCACTTCAAATGCTA-CCCC-TCCTTATGTGATCCTCTTTATAGGCCAGGGAAGGGTTGAGCTAATGTTTGTGGTAGGAGGGACAGCTCTGTGACCTTTAGGTAAGCCCTGGCAGGAGGTATCTGGTCCCACCTCTTAGGGATTCTCATTACACCACAGCTCATTTAACAGCTCTTTATTCTCAGCTTTGGGCCCTAATGGCCAATTCTGgggcaatagaaaaaaaaaataatctactCAACCTCCAGTTAAGAC--TAAAGTAATTTTAATTCTCTTCAAAGCCTATTTCAAATGTTGCTTTGACCAGAAGTGTTTCCTAGTTCTC-AACTAAACC----AATCTCTCCCTGACCCTATCACAGCACTTTTCCAATGATGTTTTACCAACTGGGTTATGCATGCAACTAGCAATGTG-AAACACTGTGTTAGGATATACGCcatttgaaaatttattataaaatgtttgttttagaaGAACTAGTGGGGaaaagtatacagaaaaaaattacccagccaggtgcggtggctcatgtctgtaatcccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa-taca-aaaattagccaggcatggtggcgcacacctgtaatcccagttactcaggagaccgatgcagaagaatcacttggacccgggagtcggaggttgcagtgagccaagatcacaccactgcacttcagcctggacaacagagcgggattccgtctcagg---aaaaaaaaaattacccataatttttttctg-tattaccCACCTTCACTGTCACATTTATACCACTTCAGGgtttttctatgcatatatacTTAAGGCCATTctttttacactttgcttttatacattttgcttttttacacctgtcctacactttg---tttttttcatttcagacaCCGTAGTTATCTTTCTTTGCCATTAAGTAGTCTTCTACAAACATTATATTTTATGGTACAGGATACTCCATGATACAACTTTCCTATCATTTACTTAACATTCTGTTACCAAATTGTCCCTAGTTATAATGCTGTCCATAAACAATCTTAGGTTTTCAtaattctgattatttccttCAAGTAACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTcttcatagaaaaatatatatcctaGTTTACTTCCTCATTAACCACAAGGTTGGTATTTTTGCTGGTGAACACAG-GAAAAATGCTCTCTACTGTAGGCCAGGCATCCTTGTTTCACCACTCGAGAACACAGGCCCACAGCCCTGAGCTGAATCACAAGTGGAAAGC--AGAGAGCTGACCACACAAGGGAGGGGCTAGATATATGTGAAGGGCTCAAAAACATCAGCTACCTCTGACAGAAACCTTTCCTACAATTTATCGAGTTTCCTTAAATCTGCAGTGTTGTCTTAACATCTGACTCCCATAAGACACCTGTGAGTCAGGTTGAACAGGTACCATTCTGTCctacagctgagaaaactgacCT-TTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGATCTTCCTCCTGTTTCTCTTAGAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCCGAGAAGTCTATAACTTGTACTTCAGCTACTGATCCTGGGCAGAGTATAATGGTAAC-AACACCCTCACCAGACCCTGGCATCTTACCAGTGAAGTCACTGGGATCCCTGGACAGTTGCAAACATACATTCCTGAAAGCTCCTCTCCCATTAATCATGGGTCC-TTTCCCTTAG---GTCCAACACCTAGTATtagctgaaaaatattttcctgtaaaCTAGAAAAGTTTTCAGCATCTCTGAAACAACCCAGTGAGGTTTAAGCCATTGTTGAATTGTTGAgtgttatgcttttattttt--tggtggaggtgggcaggggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacctcccagactcaagtgatcttcccacctcattctccaagtagctgcaactaggTGCACACA-CCACAttctgctaatttttcta-ttttttttgtagacagggtttcactatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccaGCCTCAATTACA-GGTTTaagtcatcatgcctggcctgtcatTCTTACTGGGACACAATACATGCAATTttctcaaaggagaaaaagagatcaTGTAGTAGAACTAAGAAAGATG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21173489 3082 -  24206276 aaaaggtctatggcttaaaggactagggaatgtggagagggcCCTCTAGATGGCAGACATCCCTCTCATCTCCACTGGACAGTTGTTGGGGTAGGAAATCCAGCTC-GGCCTTACCTTTC-AGCCCCACCCTAGCTCCCACCACCC--ACCATGCAACAAGGgccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaacc----------------ctcttaa--------------------accacagcaaatcacaactttcttgtatacaaacagagaattcagatgctccagctac--tctctttccccaccccaccacatctctctccagagtctcactctattaccca-ggctggagtgcagtggtgagaccttggctcactgcaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------gcactataggcacacaccatcatgcccagttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtc-ctgcacccagcccacatctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcatcctccgtctacacaagtatttctcttggaagaccctcttgcttggcttgaacaacaaagccacatcctatcccaccctcctccacagac-gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctttataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgaccttttggtaagccctggcaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaatagaaaaaAAAAATAATCTACTCAACCTACAGTTAAGAC--TAAAGTAATTTTAATTCTCTTCAAAGCCTATTTCAAATGCTGCTTTGACCAGAAGTGTTTCTTAGTTCTC-AACTAAACC----AATCTCTCCCTGACCCTATCACAGCACTTTTCCAATGATGTTTTACCAACTGGGTTATGCATGTAACTAGCAATGTG-AAACACTGTGTTAGGATATACGCCATTTGAAAATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTATACAGAAAAAAATTACCCAgccaggtgcagtggctcatctctgtaatcccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa-taca-aaaattagccaggcatggtggcgcacacctgtaatcccagttactcaggagaccgaggcagaagaatcacttggacccaggagtccgaggttgcagtgagccgagatcacgccactgcactccagcctggacaacagagcgggattccgtctcagg---aaaaaaaaaaTTACCCATAATTTTTTCCTG-TATTACCCATCTTCACTGTCACATTTATACAATTTCAGGGTTTTTCTATGCATATATACTTAAGGTCATTCTTTTTACACTTTGCTTTTATACATTTTGCTTTTTTACACCTGTCTTACACTTTG---TTTTTTTCATTTCAGACACTGTAGTTATCTTTCTTTGCCATTAAGTAGTCTTCTACAAACATTATATTTTATGGTACAGGATACTCCATGATACAACTTTCCTATCATTTACTTAACATTCTGTTACCAAATTGTCCCTAGT--TAATGCTGTCCATAAACAATCTTAGGTTTTCATAATTCTGATTATTTCCTTCAAGTAACAAAATTACTTTTGATCAGAAGCTACAAGATTGGATTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAGGTTGGTATTTTTGCTGATGAACACAG-GAAAAATGCTCTCTACTGTAGGCCAAGCATCCTTGTTTCACCACTCGAGAACACAGGCCCACAGCCCTGAGCTGAATCACAAGTGGAAAGC--AGAGAGTTGACCACACAAGGGAGGGGCTAGGTATATGTGAAGGGCTCAAAAACATCAGCTATCTCTGACAGAAACCTTTCCTACAATTCCTTGAGTTTCCTTAAATCTGCAGTGTTGTCTTAAcatctgactcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaattgaCCT-TTTATCTCACTGCCCAGGATCAAGCTTAGAACCCAGGTTTCCCAGTTTCCTCAAGATCTTCCTCCTGTTTCTCTTAGAAGGTTCTAAGGAAGCTGAAAAGGAGTTGAAGAGCCCGAGAAGTCTGTAACTTGTACTTCAGCTACTGACCCTGGGCAGAGTATAATGGTAAC-AACACCCTCACCAGACCCTGGCATCTTACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACACTCCTGAAAGCTCCTCTCCCATCAATCATGGGTCC-TTTCCCTTA-----CCCAACACCTAGTATTAGCTGAAAAATATTTTTCTGTAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGGTTTAAGCCATTGTTGAATCGTTGAGTGTCATGCTTTTATTTTT--TGGCGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacatcccagactcaagtgatcttcccacctcattctccaagtagctgcaactaggtgcacaca-ccacattccgctaatttttcta-ttttttttgtagacagggtttcaccatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcaccatgcctggccTGTCATTCTTACTGGGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAGTAGAACTAAGAAAGATG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22320150 3103 + 158406734 aaaaTATCTACGGCTTAAAG-ACTAGGGAATGTGGAAAGGGCCCTCTAGGTGGCAGGCAACCCCCTCATTTCCACTAGACAGTTGTTGGGGGAGGAAATCCAGCTCAGGCCTGACCTTCC-AGCCTTACTCTAGCTCCCACCACCG--ATCACGCAACAAGGGCCTTCTTGGTTGGGTACCAGCCCAAAAGCTCAGGACTTTGCAAAACCTGAGCAAATCACAACTTTCTTAAACCACTTGCTGTGGTTTAAGACCACAACAAGTCACAACTTCCTTGTACATAAACAGGGAATTCACAtgctccagctactgtctttttccctgccctaccatctctctctccagagtctcactctgtcaccgagggctggagtgcggtggtgagatctcagctcactgtgaccttcaatccctgggttcaagcaattctcctgcctcagcttcccgagtagctgggactacaggcacacaccaccatgcccagttaatttttgcatttttaatagagacaaggtttcattatgttggtcaggctggtcttgaactcctgacctaaagtgatccacctgcctcagcctcccaaagtactgggat---tacatgtgtgagccactgtacccagcccgtatctcttaatttctcattaatctccattcagtcagggaaagacagcaagtctgctgtctaatcagatgctcaaccttgtcttctttttttggaatcactctccatctatacaaatacttctcttggaagaccctcttgcctggcttgaacaacaaagccacattctaccccaccctcctccactaacgtggaggtaaccacttcaaatacta--ccc-tccttatgtgatcctctttatagaccagggaagggctgagctaatgtttgtggtagcagggacagctctgtgaccttttggtaagccctggcaggaggtatctggtcctacctcttagggattctcattataccacaggtcacttaagagttcttcattctcagctttgggccctaatggccaattttcgggtaacagaaacaaaa----atctactcaacattcagttaAGACTATAAAGTAATTTTAATTCTTTTCGAAGCCTATTTCAAATGCTCCCTTAACCAGAAGGGTTTCCTAGTTTCCTAACCAACGT----AACCTCTCCCTGACCCTGTCACAGCACTTTTCCAATGATGCTTTATCACCTGGGTTATGCAAGCAACTAGCACTGTG-AAACACTTTG------------AAATTTGAAATTTTATTATAAAATGTTTTTTACGGAAGAACTAATGGGGAAAAGTATACAGAAAAA-ATTACCCAgccaggtgcagtggctcatgcctttaatccctgcactttgagaggccaaagtggatggatcacttgagatcaggagttcaagaccagcctggccaatgtggtgaaa-tgccatctctactaaaaacacaaaatcagctgggtgtggtggcgcacacctgtaatcccatctactcaggagactgaggcaggagaatctcttgaacccgggagtcgtacgttgcagtgagccgagataacaccactgcactctggcctggacaacaaagcgagattcggtctaaagaaaaaaaaaaaaaaTACCCATAATTTTTTTCCG-TATTACCCACCTTCACTCTCACA--TGTATCATTCTAGTGTTTTTCTGTACATGTATACTTAAGGCCATTCTTTTTACAC--TGCTTTTTTACATTTTGCTTTTTTACATCTgtcttacactttg---cttttttcatttcagataatgtagttatctttgtttgccattaagtagtattctataaacattatatttaatggcaaatgatattccatgatatggctttcctaccatgtacttaacATTCTGTTGCCAAATTGTCCCTAGCTATTATGCTGTCCATAAATAATCTCAGGTTCTGATAATTCTGATTATTTTCTTCAAGTAACAAAATTACTTTTGATCAGAAGCAACAAGTTTGGGTTATTTTTTAAGGTTCTTCACAGAAAAATATATATTTTAGTTTACTTCCTCATTAATCACAAGGTTGGTATTTTTGCTGGAAAACACAG-GAAAAATGCTCTCTGCAGTAGCCCAGGCATCCTTGTTTCACCACTCAAGAATACAGGCCCACAACCCTGAACTGAATCGCAGGTGGAAAGCAGAGAGAGTTGACCACACAAGAGAGGGGGTAGGAATATGTGAAGGGTTCAAGAACATCCGCTACCTTTGACAGGAACCTTTCCTACGATTCCATGAGTTCCCTCAAATCTGCAGTattgtcttaacatctgagctccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctacagctgaacaatctgaCCTCTTTATCTCGCT-CTCAGGGTCAAACTTAGAACACAGGTTTCCCAGCTTCCTCAAGATCTTCCTCCTGTTCCTCTTAGTAGGTTCTAA-GAGGCTGTGAAGGATCTGAAGAGCCT-AGAAGTCTACACCTTGTAGTTTGGCTACTGTCCCTGGGCAGAGTATAATGGTAAC-AACACCCTCATAAGACCCTTTTGTTTTACCAGAGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACGCTCCTGAAAGCTGCTCTCCCATCAAGCATGGGTCA-TTTCCCTTAGACAGTCCAACACCTAGTATTAGCT-AAAAATATTTTCCTATAAACTAGAAAAGTTTCCAGCATCTCTGAAGCAACTCAGTGAGGTTTAAGCCATTGTTGAATTGTTAACTGTTAGGCTTTTTTTCTT------GGAGG-----------------ccgccacccaggctg--tagtatagtgacatgaccac-gttcaccgcagccttgacctcccaggctcaagtgattctcccacctcaccctccaagtagctttgactaggtgcacaccaccacaactggctaatttttcta--tttttttgtagatgggggttcaccatgttgcccaggctggtctcaaactactaacttcaagtggcccacctgctccagccttaattacaggggttaagttaccacatctggccTGTCATTCTTACTGGGACACAATACATGCAATTTCCTCAAAGGAGAAAAACAGAACATTTATTAGAATTGAGATG----
i calJac3.chr6              I 301 I 312
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=433898.000000
s hg38.chr15_KI270850v1_alt    414305 149 +    430880 ACTCCCTGAACTTTTAACTCAGCGTAA-ACTAAAAGAGAATTGGGCT-AGCTCATGACTTACATTTTTCTTTTGTACAAGTCAGAAGAGACAAAAACCACCCCCACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTACGACAGAAG
s panTro4.chr15              80196365 149 +  99548318 ACTCCCTGAACTTTTAACTCAGCGTAA-ACTAAAAGAGAATTGGGCT-AGCTCATGACTTACATTTTTCTTTTGTACAAGTCAGAAGAGACAAAAACCACCCCCACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTACGACAGAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10211240 149 +  10928107 ACTCCCTGAACTTTTAACTCAGCATAA-ACTAAAAGAGAATTGGGCT-AGCTCATGACTTACATTTTTCTTTTGTACAAGTCAGAAGAGACAAAAACCACCCCAACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAGAAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17285902 149 - 121039945 ACTCCCTGAACTTTTAACTCAGCGTAA-ACTAAAAGAGAATTGGGCT-AGCTCATGACTTACATTTTTCTTTTGTACAAGTCAGAAGACACTAAAACCACCCTCACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTACGACAGAAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106753620 150 - 170124641 ACTCCCTGAACTTTTAACTCAGCATAACCCTAAAAGAGAACTGGGTT-AGCTCATGACTTATATTTTTCTTTTGTAGAAGTCAAAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108486594 150 - 171882078 ACTCCCTGAACTTTTAACTCAGCATAACCCTAAAAGAGAACTGGGTT-AGCTCATGACTTGTATTTTTCTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103254205 150 - 162156779 ACTCCCTGAACTTTTAACTCAGCATAATCCTAAAAGAGAACTGGGTT-AGCTCAtgacttatatttttcttttgtagaagtCAGAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21176571 150 -  24206276 ACTCCCTGAGCTTTTAACTCAGCATAACCCTAAAAGAGAACTGGGTT-AGCTCATGACTTATATTTTTCTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCTAACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22323565 151 + 158406734 ACTCCCTGAATTTTTAACTCAGTGTAA-GTTAAAAGAGAACTGAACTAAGCTCATGACTTACATTTTTCTATTGTAGAAGTCAGAGGAGACAAAAACTACCCATAACCCCAAGTATACCCCTTCTCTCATCTGCTTTCCTGTACAACAGAAA
i calJac3.chr6              I 312 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=93382.000000
s hg38.chr15_KI270850v1_alt    414454 35 +    430880 CAAATGCCACAAGTTAGTCACTCCCTTAATATGCC-
s panTro4.chr15              80196514 35 +  99548318 CAAATGCCACAAGTTAGTCACTCCCTTAATATGCC-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10211389 35 +  10928107 CAAACGCCACAAGTTAGTCACTCCCTTAATATGCC-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17286051 34 - 121039945 CAAATGCCACAAGTTAGTCACTCCCTTAATATG-C-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106753770 35 - 170124641 CAAATGCTACAAGTTACTCTCTTCCTTAATAAGCC-
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108486744 35 - 171882078 CAAATGCTACAAGTTACTCTCTTCCTTAATAAGCC-
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103254355 35 - 162156779 CAAATGCTACAAGTTACTCTCTTCCTTAATAAGGC-
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21176721 35 -  24206276 CAAATGCTACAAGTTACTCTCTTCCTTAATAAGCC-
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22323716 35 + 158406734 CAAATGGCACAAGTTAGTTTCTCCCTTAATATGCC-
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54479716 36 +  91889043 CAGTTACCAAAAGTCAATCTTGTTTGTAATAAAATC
i canFam3.chr3              I 4383 C 0
e mm10.chr7                  81404089 30523 + 145441459 I

a score=444661.000000
s hg38.chr15_KI270850v1_alt    414489 117 +    430880 TCTCCCTCAAACATTACGCTATTTACTGCTCACAT-ACTCCTGCATTTTTGTGGGAATTATTTCTAACGCCAAGTTAAAAAAATAAATAAAAGAATTTACAACTAAA-AACAGTagttg----
s panTro4.chr15              80196549 116 +  99548318 TCTCCCTCAAACATTACGCTATTTAATGCTCACAT-ACTCCTGCATTTTTGTGGGAATTATTTCTAACGCCAAGTTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg----
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10211424 114 +  10928107 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTGCA--TTTGTGGGAATTATTTCTAACGCCAAGTTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagtcg----
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17286085 116 - 121039945 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTGCATTTTTGTGGGAATTATTTCTAAGGCCAAGTTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg----
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106753805 116 - 170124641 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAGCTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg----
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108486779 116 - 171882078 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAGCTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTCgttg----
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103254390 116 - 162156779 TCTCTCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTACATTTTTGTGGGAATTATTTCTAAGGccaagctaaaaaa-taaataaaagaatttacaaCTAAA-AACAGTAGCTG----
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21176756 117 -  24206276 TCTCCCTCAAACATTAAGCTACTTAATGCTCACATAACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAGCTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg----
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22323751 116 + 158406734 TCTCCTTCAAACATTAAGATATTTAATGCTCACAT-ACTCCTGCATTGTTGTGGGAATTATTTTCAAGGCCAAGCTAAAAAA-CAAATGAAAGAATTTACAACTACA-AACAGTagttg----
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81434612 112 + 145441459 TTTCCTCCAAATGTTTAGCTACTTAATGTTCATGG-GC-CCTACATCTTCGTGGGAATTATTTCCAACACTA----AAAAGT-TAAATCACAGATTTTATAACTAAAGAACAGTACTTG----
i mm10.chr7                 I 30523 C 0
s canFam3.chr3               54479752 121 +  91889043 TCTCCCTCAGATGTTTAGCTACTTTATGTTCACAT-ACACCTGTATCCTTATGAGAACTATTTCCAACATCAAGTTAGGAAG-CAAATCAAAGAATTTATGATGAAAAAACAGCAATTACCAG
i canFam3.chr3              C 0 C 0

a score=21285.000000
s hg38.chr15_KI270850v1_alt    414606 5 +    430880 tcctt
s panTro4.chr15              80196665 5 +  99548318 tcctt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10211538 5 +  10928107 tcctt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17286201 5 - 121039945 tcctt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106753921 5 - 170124641 tcctt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108486895 5 - 171882078 tcctt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103254506 5 - 162156779 TCCTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21176873 5 -  24206276 tcctt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22323867 5 + 158406734 tcctt
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54479873 5 +  91889043 TCCTT
i canFam3.chr3              C 0 I 75
e mm10.chr7                  81434724 0 + 145441459 C

a score=700130.000000
s hg38.chr15_KI270850v1_alt    414611 233 +    430880 tggtatatgtagggaattggttccaggacccccagagtataccaaaatccgcacatactcaagtcttgcagttggtcctgaggaacccacctataccagaaaagtcagccctccatacgtgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatgtaagtggacctgcacagtccaacgtagtgttgctcaagggttgactgTAATTA
s panTro4.chr15              80196670 233 +  99548318 tggtatatgtagggaattggttccaggacccccagagtataccaaaatccgcacatactcaagtcttgcagttggtcctgaggaacctacctataccagaaaagtcagccctccatatgtgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagtccaacgtagtgttgttcaagggttgactgTAATTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10211543 233 +  10928107 tggtatatgtagggaattggttccaggacccccagagtataccaaaatccgcacatactcaagtctcgcagttggtcctgaggaacccacctataccagaaaagtcagccctccatacatgtgggttttacatcccttgaataccacattttccagctttggttgaaatacatctgcatataagtggacctgcacagtccaatgtagtgttgttcaagggtcgactgTAATTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17286206 229 - 121039945 tggtgtatgtagggaattggttccaggacccctaaagtataccaaaatccgc----actcaagtctcgcagttggtcctgaggaacccacctataccagaaaagtcagccctccacacatgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatataagtggacttgcacagttcaatgtagtgttgttcaagggtcgactgTAATTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106753926 233 - 170124641 tggtgtatgtagggaattggttccaggacccctacagtataccaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtgggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgttgctcaagggtcgactgTAATTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108486900 233 - 171882078 tggtgtatgtagggaattggttccaggacccctacagtataccaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtgggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgttgctcaagggtcgactgTAATTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103254511 233 - 162156779 TGGTGTATGTAGGGAATTGGTTCCGGGACCCCTACAGTATACCAAAATCCACACATACTCAAGTCTCACAGTTGGTTCTGAGGAACCCACCTATACCAGaaaagtcagccctccatatATGTGGGTTTTACATCCCTTGAATATCACATTTTCCAGCTTTGGTTGAAAAACatctgcatataagtggacctgcacagttcaaagtAGTGTTGCTCAAGGGTCGACTATAATTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21176878 233 -  24206276 tggtgtatgtagggaattggttccgggacccctacagtatactaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtaggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgtagctcaagggtcgactgTAATTA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22323872 225 + 158406734 tggtgtatgtagggatttggttctaggacccttagaatataccaaaatctgcacatactcaagtcttgcagttggtcctgaggaacccacttacaccagaaaagtcagccctccatatatgtgggttttacatcccttgaataccatattttccatct----ttgaaaaacg--tgcagaaacgtgaacctgcacagttcaaaataatgtcattcaagggtcgactg--ATTA
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81434724   0 + 145441459 C
e canFam3.chr3               54479878  75 +  91889043 I

a score=321625.000000
s hg38.chr15_KI270850v1_alt    414844 97 +    430880 TCAGTCCTTGTTTTGAGAATCCCCATTGTGGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
s panTro4.chr15              80196903 97 +  99548318 TCAGTCCTTGTTTTGAGAATCCCCATTGTGGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10211776 97 +  10928107 TCAGTCCTTGTTTTGAGAATCCCAATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17286435 97 - 121039945 TCAGTCCTTGTTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106754159 97 - 170124641 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAAAA-TACATTCTTTCATCTAAAATAACTCAAAC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108487133 97 - 171882078 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAAAA-TACATTCTTTCATCtaaaataactcaaac
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103254744 97 - 162156779 TCAGTCCTTAGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAaggtccatttt-taaaaattaaaaa-tatattctttcatcTAAAATAActcaaac
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21177111 97 -  24206276 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAAAA-TATATTCTTTCATCTAAAATAACTCAAAC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22324097 98 + 158406734 TCAGCCTTTGTTTTGAGAATTGCCATTGTTGCTAATTTTTTTCAAGGTCCatttt-taaatattaaaaattatattCTTTCATGTAAAATAACTCAAAA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81434724 91 + 145441459 CCAGTC---ATTCTGGGAAATC----TGTTGCTATTTTTTTTCAAAGCCCATTCTAAAAAAATTAAAAA-TGTAATCTTTCTTCTAAAATGACCCAAGC
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54479878 75 +  91889043 I

a score=166900.000000
s hg38.chr15_KI270850v1_alt    414941 54 +    430880 Aggccaggcacagtggctcgtgcctgtaatcccagcactttgggaggccgaggt
s panTro4.chr15              80197000 54 +  99548318 Aggccaggcacagtggctcgcgcctgtaatcccagcactttgggaggccgaggt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10211873 54 +  10928107 Aggccaggcgcagtggctcacgcctgtaatcccagcactttgggaagccgaggt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17286532 54 - 121039945 Aggccaggcacagtggctcacgcctgtaatctcagcactttgggaggccgaggt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106754256 54 - 170124641 AggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggT
i rheMac3.chr7              C 0 M 9662
s macFas5.chr7              108487230 54 - 171882078 aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103254841 54 - 162156779 aggccaggcacagaggctcacacctgtaatcccagcactttgggaggccgaggt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21177208 54 -  24206276 Aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22324195 51 + 158406734 Aggccagg---agcagatcacacctgtaatcccagcactttgggaggccaaggt
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e canFam3.chr3               54479878 75 +  91889043 I

a score=544162.000000
s hg38.chr15_KI270850v1_alt    414995 236 +    430880 gggtggatcacctgacgtcaggagtttgagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaaattagccaggtgtggtggcgggtgcctgtaatcccagctacttgggagactgaggcaggagaattgcttgaacccaggaggcagaggttacagtgagctgagatcgcaccactgcattccaacctgggcgaaagagctagactctgtctc----------aaaaaa
s panTro4.chr15              80197054 236 +  99548318 gggtggatcacctgacgtcaggcgtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattagccaggtgtggtggcgggtgcctgtaatcccagctacttgggagactgaggcaggagaattgcttgaacccaggaggcagaggttacagtgagctgagatcgcaccactgcattccaacctgggcgaaagagctagactctgtctc----------aaaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10211927 236 +  10928107 gggtggatcacctgacgtcaggagtttgagaccagcctggccaacatggcgaaaccccatctgtactaaaaatacaaaaaattagccaggtgtggtggcaggtgcctgtaatcccagctacttgggagactgaggcaggagaattgcttgaacccaggaggcagaggttacagtgagctgagatcgcaccactgcactccagcctgggcgacagagctagactctgtctc----------aaaaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17286586 244 - 121039945 gggtggatcacctgacgtcaggagtttgagaccagcctggccaacatgacgaaaccccatctctaccaaaaatacaaaaaattagccaggtgtggtggtgggtgactgtaatcccagctacttgggagactgaggcaggagaactgcttgaacccaggaggcggaggttacagtgagctgagatcgcaccactgcactccagcctgggcaacagagctagactctgtctc--aatttaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108487284 246 - 171882078 gggtggatcacctaaagtcaggagtttgagaccagcctgcccaacagggtgaaaccccatgtctactaaaaatacaaaaaattagccaggtgtggtggtgggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaagcggagcttacagtgagctgagactgcaccactgcattccagcctaggcgacagagcgagactctgccttgaaagaaaagaaagaa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103254895 237 - 162156779 gggtggatcacctaaagtcaggagtttgagaccagcctgcccaacagggtgaaaccccatctctactaaaaatacaaaaaattagccaggtgtggtggtgggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaagcggaggttacagtgagctgagattgcaccactgcattccagcctgggcgacagagcgagactctgcctt---------gaaagaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21177262 246 -  24206276 gggtggatcacctgaagtcaggagtttgagaccagcctgcccaacagggtgaaaccccatctctactaaaaatacaaaaaattagccaggtgtggtggcgggtgcctgtaatcccagctatttgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttacagtgagctgagattgcaccactgcattccagcctgggcgacagagcgagactctgcctcgaaagaaaagaaagaa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22324246 234 + 158406734 aggtggatcacctgaggttaggagtttgagactagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaaattagccaggcgtggtggcgggcacctgtaatcccagctacttgtgaggctgaggcaggagaattgcttgaccccaggaggtggaggttgcagagagccaagattgccccactgtactccagcctgggcgacaaagcaaga--ctgtctc----------aaaaaa
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81434815   0 + 145441459 C
e canFam3.chr3               54479878  75 +  91889043 I
e rheMac3.chr7              106754310 9662 - 170124641 M

a score=526634.000000
s hg38.chr15_KI270850v1_alt    415231 314 +    430880 aagaaagaaa----aacaaaatataaaaTAAAggccgggtgcagtggctcacacctataatcccagcactttgggaggccaaggcacgcagatcacaaggtcaggacatcgagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccgcttgaaccagggagttggaggttgcagtgagccgagatcacaccactgcactccaacctggcaacagagtgagactccgtccc----aaaaa--------------a-c
s panTro4.chr15              80197290 322 +  99548318 aagaaagaaagaaaaacaaaatataaaataaaggccaggtgcagtggctcacacctgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggacatcgagaccatcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccgcttgaaccagggagtcggaggttgcagtgagccgagatcacaccactgcactccagcctggcaacagagtgagactccatccccccaaaaaa--------------a-a
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10212163 327 +  10928107 aa-aaagaaa----aacaaaatataaaaTAAAggccgggtacagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggacatcgagaccatcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagctgggtgtggtggcgcatgcctgtaatcccagctactagggaggctgaggcaggataaccgcttgaaccagggagtcggaggttgcagtgagccgagatcacaccactgcactccagcctggcaacagagcaaggctccatctc----aaaaaaaaaaaaaagaaaga-a
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17286830 322 - 121039945 aagaaagaaagaaaaaCAAaatataaaataaaggccgggtgcagtggctcacgcctgtaatcccagcacttcgggaggccaaggcaggcagattgcaaggtcaggacatcgagagcatcctggccaacatggtgaaactctatctctactaaaaatacaaaaattagctgggcgtggtggcgcatgcctgtaatcccagctactagggaggctgaggcaggataaccgcttgaaccaggcagtcagaggttgtagtgagccgagatcacaccactgcactccagcctggcgatagaacgagactccgtctc----aaaaaaaaa----------a-a
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108487530 312 - 171882078 aagaaagaga----aaaaaaatataaaataaaggccaggcacagtggctcatgcctgtaatcccagcattttggcaggccacggaaggcagatcacaaggtcaggagatcgagaccatcctggccaacat-gtgaaaccccgtctctactaaatatacaaaaattagctgggcatggtggtgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcggtggttgcagtgagccaagatcacaccacagcactccagcctggggacagagcgagactctgtttc----aaaaa--------------a--
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103255132 312 - 162156779 aagaaagaga----aaaaatatataaaataaaggccaggcgcagtggctcatgcctgtaatcccagcattttggcaggccacggcaggcagatcacaaggtcaggagatcgagaccatcctggccaacat-gtgaaaccccgtctctactaaatatacaaaaattagctgggcatagtggtgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcagtggttgcagtgagccgagatcacaccacggcactccagcctggggacagagcgagactctgtctc----aaaaa--------------a--
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21177508 314 -  24206276 aagaaagaga----aaaaATATATAAAATAAAggccaggcgcagtggctcatgcctgtaatcccagcattttggtaggccacggcaggcagatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaaccccatctctactaaatatacaaaaattagctgggcatggtggtgtgtgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcagtggttgcagtgagccaagatcacaccactgcactccagcctggggacagagcgagactctgtctc----aaaaa--------------aa-
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81434815   0 + 145441459 C
e calJac3.chr6               22324480   0 + 158406734 C
e canFam3.chr3               54479878  75 +  91889043 I
e rheMac3.chr7              106754310 9662 - 170124641 M

a score=20594.000000
s hg38.chr15_KI270850v1_alt    415545 14 +    430880 aaaaagaaagaaag
s panTro4.chr15              80197612 14 +  99548318 agaaagaaagaaag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10212490 14 +  10928107 agaaagaaagaaag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17287152 14 - 121039945 aaaaagaaagaaag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106763974 14 - 170124641 aaaaaaaaaaaaag
i rheMac3.chr7              M 9662 C 0
s macFas5.chr7              108487842 11 - 171882078 ---aaaaaaaaaag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103255444  6 - 162156779 --------aaaaag
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21177822 11 -  24206276 ---aaaaaaaaaag
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e calJac3.chr6               22324480  0 + 158406734 C
e canFam3.chr3               54479878 75 +  91889043 I

a score=38914.000000
s hg38.chr15_KI270850v1_alt    415559 23 +    430880 aaaaagaaaATAT-AA--------------------------------------------AATAAAAT
s panTro4.chr15              80197626 23 +  99548318 aaaaagaaaatat-aa--------------------------------------------aataaaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10212504 23 +  10928107 aaaAAGaaaatat-aa--------------------------------------------aataaaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17287166 23 - 121039945 aaaaagaaaatat-aa--------------------------------------------aataaaat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106763988 24 - 170124641 gaaaagaaaatacgaa--------------------------------------------aacaaaat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108487853 24 - 171882078 gaaaagaaaatacgaa--------------------------------------------aacaaaat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103255450 24 - 162156779 gaaaagaaaatacgaa--------------------------------------------aacaaaat
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21177833 68 -  24206276 gaaaagaaaaTACGAAAACAAAATAAATAACTCAAACCAAAAACACTTCAACATTCTTATAACAAAAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22324480 23 + 158406734 aaaaccaaaatgt-aa--------------------------------------------aataaata
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e canFam3.chr3               54479878 75 +  91889043 I

a score=46614.000000
s hg38.chr15_KI270850v1_alt    415582 15 +    430880 AAATAACTCAAACCC
s panTro4.chr15              80197649 15 +  99548318 aaataaCTCAAACCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10212527 15 +  10928107 aaataaCTCAAACCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17287189 15 - 121039945 aaataaCTCAAACCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106764012 15 - 170124641 aaataaCTCAAACCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108487877 15 - 171882078 aaataaCTCAAACCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103255474 15 - 162156779 aaataactcaaacca
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21177901 15 -  24206276 AAATAACTCAAACCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22324503 14 + 158406734 aaaTCACTCTAA-CA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54479953 15 +  91889043 AAGTAACTCAAACAA
i canFam3.chr3              I 75 C 0
e mm10.chr7                  81434815  0 + 145441459 C

a score=615512.000000
s hg38.chr15_KI270850v1_alt    415597 175 +    430880 AGAACACT---TCAAC----ATTCTTATAATGGGTTGCAACTCCCACAAA-----ATTAAACACC----ATTAGGACATCCACACCT-CTTGG----AAAGAGTCAACTTCAGGGGATGCTG-CCCTCTATCTCCACTATTCCTTGGAGTATCCAATAGAT-ACAGAAACTAAATGCGTGCTG------ACTCATGT------TTAAAAG
s panTro4.chr15              80197664 175 +  99548318 AAAACACT---TCAAC----ATTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----ATTAGGACATCCACACCT-CTTGG----AAAGAGTCAACTTCAGGAGATGCTG-CCCTCTATCTCCACTATTCCTTGGAGTATCCAATAGAT-ACAGAAACTAAATGCGTGCTG------ACTCATGT------TTAAAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10212542 176 +  10928107 AAAACACT---TCAAC----GTTCTTATAATGGGTTGCAACTCCCACAAA-----ATCAAACACC----ATTAGGACATCCACACCT-CTTGG----AAAGAGTCAACTTCAGGAGATGCTGCCCCTCTATCTCCACTATTCCTTGGAGTAGCCAATAGAT-ATAGAAACTAAATGCGTGCTG------ACTCACGT------TTAAAAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17287204 169 - 121039945 AAAACACT---TCAAC-----------TAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----ATTAGGACATCCACACCT-CTTGG----AAAGAGTCAACTTCAGGAGATGCTG-CCCTCTATCTCCACTATTCCTTGGAGTATCCAGTAGATCACAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106764027 176 - 170124641 AAAACACT---TCAAC----ACTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTTGG----AAAGAGTCAACTTCAGAAGATGCTG-CCCTCTATCTCCACTATTCCTTGGAGTATCCAGTAGATCACAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108487892 176 - 171882078 AAAACACT---TCAAC----ATTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTTGG----AAAGAGTCAACTTCAGAAGATGCTG-CCCTCTATCTCCACTATTCCTTGGAGTATCCAGTAGATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103255489 176 - 162156779 aaaacACT---TCAAC----GTTCTTATAATGGGTTACAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTTGG----AAAGAGTCAACTTCAGAAGATGCTG-CCCTCTATCTCCACTATTCCTTGGAGTATCCAGTAGATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21177916 176 -  24206276 AAAACACT---TCAAC----ATTCTTATAATGGATTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTTGG----AAAGAGTCAACTTCAGAAGATGCTG-CCCTCTATCTCCACTATTCCTTGAAGTATCCAGTAGATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22324517 182 + 158406734 AAAACACT---TCAAC----ATTCTCATAATGCATTGCAACTCCCACAAAAGATTATTAAACACC----GCTAGGACATCTGCACCTCCTTGA----AAAGAGTCAACTTCAGGAGATGCTG-CCCTCTAACTTCACTATTCCTTGGAGTATCTAATAGATCACAAAAACTAAATGTGTGCTG------ACTCATGT------TTAAAAG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81434815 187 + 145441459 AAAACATTACATCAAC----ATTCTTAAAACATGTTGCAACTCCCAGAGAAGACTATGAAACACT----GTCAGGTATTCATAATTT-CTTGGTATTCAAGAGTTATCTTCAAAAGCT-----TCCCCATCCCTTACTAATCAGTG--GCTGCCTACATGT-GGGAAAACTACATGCCTGTGGCCCTGTATTCATGT------TTTAAAG
i mm10.chr7                 C 0 I 971
s canFam3.chr3               54479968 195 +  91889043 GAAACATT---CCATCAATTATTTTTACAACATGTTGCAACTTCCACGAAAGATTATGAAACAACACTTGTTAGGACATCCAAGCCTCCTTCT----GAAGTATCATCTT-AGGGGATGCTC-CCTTCTCCCTCCACTATCCTATGGGGTATCCTACATACCATCAAAACTAAATGCTCATTG------ACTTGCATTTGTAGTTAAAAG
i canFam3.chr3              C 0 C 0

a score=847590.000000
s hg38.chr15_KI270850v1_alt    415772 293 +    430880 CTGTTAAAACATTCGAGAGCTACACTGTCCAGTGCAGTAGCCACT---------------AAACACCTGAAATg-------tccatgttgagatatgct-----tgtaaaatccacactggattttgaagtcgtagtactaataa-aaa---aaatctcattaatagttttcatattaa----a-tgttgtcatattataatatattgggttaaataaaatattaatttcatctgtatcttaa-----------ttttaacatggctaccagaaaatctgtaacatatgtgatccacattatatctctTTATATAAATACTTGTGTAATCTGTGACCTTT
s panTro4.chr15              80197839 297 +  99548318 CTGTTAAAACATTCGAGAGctacactgtccagtgcagtagccact---------------aaacacctgaaatg-------tccatgttgagatatgct-----tgtaaaatccacactggattttgaagtcgtagtactaacaa-aaa---aaatctcattaatagttttcatattaattaaa-tgttgtcatattataatatattgggttaaataaaatattaatttcatctgtatcttaa-----------ttttaacatggctaccagaaaatctgtaacatatgtgatccacattatatctctTTATATAAATACTTGTGTAATCTGTGACCTTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10212718 297 +  10928107 CTGTTAAAACATTCGAGGGctacgctgtccagtgcagtagccact---------------aaacacctgaaatg-------tccatgttgagatatgct-----tgtaaaatccacactggattttgaagtcatagtactaacaa-aaa---aaatctcattaatagttttcatattaattaaa-tgttgtcatattataatatattgggttaaataaaatattaatttcatctgtatcttaa-----------ttttaacatggctaccagaaaatctgtaacatatgtgattcacattatatctctTTATATAAATACTTGTGTAATCTGTGACCTGT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17287373 296 - 121039945 CTCTTAAAACATTTGAGAGCTACACTGTCCAGTGCAGTAGCCACC---------------AAACACCTGAaatg-------tccatgttgagatatgct-----tgtaaaatccacactggattttgaagtcgtagtactaacaa-aaa---aaa-ctcattaatagttttcatattaattaaa-tgttgtcatattataatatattgggttaaataaaatattaatttcatctgtatcttaa-----------ttttaacatggctaccagaaaatctgtaacatatgtgattcacattatatctctTTATATAAATACTTGTGTAATCTGTGACCTGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106764203 266 - 170124641 CTGT----------------------------TGCAGTAGCCACT---------------AAACACCTGAAATG-------TTCATGCTGAGATAAGCT-----TGTAAGATCCACATTGGATTTTGAAGTCATAGTACTAACAAtaaa---aaatctcatt----gtttttatattaattaaa-tgttgtcatattatcatatattgggttaaataaaatattaatttcatctgtatcttaa-----------ttttaacatggctaccagaaaatctgtaacatatgtaattcacattatatctctTTATATAAATACTCGTGTTATCTGTGACCTGT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108488068 267 - 171882078 CTGT----------------------------TGCAgtagccact---------------aaacacctgaaatg-------ttcatgctgagataagct-----tgtaagatccacactggattttgaagtcatagtactaacaataaa---aaatctcatt----gtttttatattaattaaattgttgtcatattatcatatattgggttaaataaaatattaatttcatctgtatcttaa-----------ttttaacatggctaccagaaaatctgtaacatatgtaattcacattatatctctTTATATAAATACTCGTGTTATCTGTGACCTGT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103255665 266 - 162156779 CTGT----------------------------TGCAGTAGCCACT---------------AAACATCTGAAATG-------TTCATGCTGAGATAAGCT-----TGTAAGATCCACACTGGATTTTGAAGTCATAGTACTAACAATAAA---AAATCtcatt----gtttttatattaattaaa-tgttGTCATATTAtcatatattgggttaaataaaatattaatttcatctGTATCTTAA-----------TTTTAACATGGCTACCAGAAAATCTGTAACATATGTAATTCACATTATATCTCTTTATATAAATACTCGTGTTATCTGTGACCTGT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21178092 290 -  24206276 CTGTTAAAACATTCGAGAGctacactgtccaatgcagtagccact---------------aaacacctgaaatg-------tccatgctgagataagct-----tgtaagatccacactggattttgaagtcatagtactaacaataaa---aaatctcatt----gtttttat----attaaa-tgttgtcatattatcatatattgggttaaataaaatattaatttcatctgtatcttaa-----------ttttaacatggctaccagaaaatctgtagcatatgtaattcacattatatctctTTATATAAATACTCGTGTTATCTGTGACCTGT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22324699 286 + 158406734 CTGTTAAAACATTCCAGAGctacactgtccaatgcagtagccact---------------aaacacctgaaatg-------tacatattgagatatgcc-----tgtaaaatcgacactggattttgaagtcttagtactaa----aaa---aaatttcattaatagttt---tattaattaaa-tgttaccatactattacatattgggct-----aaatattaatttcatctatatcttaa-----------ttttaatatggctaccagaaaatctatgacatatgtgattcacattatatctctTTATATAAATACTTGTGTAACCTGTGGCCTGT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54480163 317 +  91889043 CAATTAaaatattcaagaaatgcactgtccaatacagcagccactagtcacatggtgacaaagcacctgaaacacaattatttccaactgaactgcattgtaaatgtgaaatatat-----atattgaagttttagcactaacaa-aaaatgacatgccatttatggtttttatattgattata-tgttgacatatt-ttgtatattag-----ataaaataTTAA---CATCCCTTTTTAAAAAAGAAAACCTTTAAAATGTGGCTAC------ATTTAT-ATATGTATGACTCCCATTATAATTCTCTATATAAATAGTCCTGCTATGTTTGACCTAT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81435002 971 + 145441459 I

a score=2103167.000000
s hg38.chr15_KI270850v1_alt    416065 530 +    430880 TCTTTTT-TCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGGCAGTCTTCACCCAGAGAGGGATTCAATCCATAAACTAAACCACAAAA-A--GGCAAGTATTGCCAGCAACTCAACATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACTTAGAAGCAGATCTGTACAGATGCCTACCACGT----------------TCAAGTTTTCAAACCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACACAG------AAAAA----------------------------AAAAGATATTTAGGTTT-TCTACACTCCTTTATGA-------C----------CCCCTTTCTCTCCACATTACGA--ATTAGATAAAGTAGGAAGGA-CTTAAGTATCTTCTTTATACATTAaaacac
s panTro4.chr15              80198136 530 +  99548318 TCTTTTT-TCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGGCAGTCTTCACCCAGAGAGAGATTCAATCCATAAACTAAACCACAAAA-A--GGCAAGTATTGCCAGCAACTCAACATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACTTAGAAGCAGATCTGTACAGATGCCTACCACGT----------------TCAAGTTTTCAAACCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACACAG------AAAAA----------------------------AAAAGATATTTAGGTTT-TCTACACTCCTTTATGA-------C----------CCCCTTTCTCTCCACATTACGA--ATTAGATAAAGTAGGAAGGA-CTTAAGTATCTTCTTTATACATTAaaacac
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10213015 531 +  10928107 TCTTTTT-TCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGGCAGTCTTCACCCAGAGAGGGATTCAATCCATAAACTAAACCACAAAA-A--GGCAAGTATTGCCGGCAACTCAACATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATGCCTACCACGT----------------TCAAGTTTTCAAACCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACAAAG-----AAAAAA----------------------------AAAAGATACTTAGGTTT-TCTACACTCCTTTATGA-------C----------CCCCTTTCTCTCCACATTATGA--ATTAGATAAAGTAGGAAGGA-CTTAAGTATCTTCTTTATACATTAaaacac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17287669 536 - 121039945 TCTTTTT-TCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGACAGTCTTCACCCAGAGAGGGATTCAATCCATAAACTAAACCACAAAA-A--GGCAAGTATTGCCGGCAACTCAACATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACCTAGTAGCAGATCTGTACAGATGCCTACCACGT----------------TCAAGTTTTCAAACCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACaaaaaaaaaaaaaaa----------------------------aaaaGATATTTAGGTTT-TCTACACTCCTTTATGA-------C----------CCCCTTTCTCTCCACATTATGA--ATTAGATAAAGTAGGAAGGA-CTTAAGTATCTTCTTTATACATTAAAACAC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106764469 530 - 170124641 TCTTTTT-TCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCACAAAA-A--GGCAAGTGTTGCTGGCAGCTCAACATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATGCCTACCACGT----------------TCAAGTTTTCAAACCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG----AAAAAAA----------------------------AAAAGATATTTAGGTTT-ACTACACTCCTCTGTGA-------C----------CCC--TTCTTTCCACACTATGA--ATTAGATAAAGTAGGAAGGA-CTTAAATATCTTCTTTACATATTAaaacac
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108488335 529 - 171882078 TCTTTTT-TCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCACAAAA-A--GGCAAGTGTTGCTGGCAGCTCAACATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATGCCTACCACGT----------------TCAAGTTTTCAAACCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG-----AAAAAA----------------------------AAAAGATATTTAGGTTT-ACTACACTCCTCTGTGA-------C----------CCC--TTCTTTCCACACTATGA--ATTAGATAAAGTAGGAAGGA-CTTAAATATCTTCTTTATATATTAAAACAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103255931 529 - 162156779 TCTTTTT-TCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCACAAAA-A--GGCAAGTGTTGCTGGCAGCTCAACATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATGCCTACCACGT----------------TCAAGTTTTCAAATCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTatccttcctgcttcttcttcctagacatag-----aaaaaa----------------------------aaaagatatttaggtTT-TCTACACTCCTCTGTGA-------C----------CCC--TTCTTTCCACACTATGA--ATTAGATAAAGTAGGAAGGA-CTTAAAtatcttctttatatattaaaacac
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21178382 529 -  24206276 TCTTTTT-TCCCCAAC-CTTTCTATGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCACAAAA-A--GGCAAGTGTTGCTGGCAACTCAACATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATGCCTACCACGT----------------TCAAGTTTTCAAATCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG-----AAAAAA----------------------------AAAAGATATTTAGGTTT-TCTACACTTCTCTGTGA-------C----------CCC--TTCTTTCCACACTATGA--ATTAGATAAAGTAGGAAGGA-CTTAAGCATCTTCTTTATATATTAAAAAAC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22324985 530 + 158406734 TCTTTTTCTCCCCAAT-CTTCCTATGTAT--CATAAAGTAGATTTACACATCCT-AACCAAAGGCAGTCTTCACCCAGACAGGTATTCAATCCATAAACT-------AAAA-A--CCCAAGTGTTGCCAGCAACTCAACATCATTCTTCACAAGCTTTCCAAGGAAGACCTCTTACAT-CACTACCTAGAAGCAGATCTGTACAGATCCCTAGCACAT----------------TCAAGTTTTCAAATCT-AAATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACATGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG------GGAAA----------------------------AAAAGATATTTAGGTTT-TCTATACCCCTTTATGA-------CAGACTTTGTACCCCCTTCTCTCCACACACTGA--GTTAGATGAAGTAGGAAGGA-CTTAAATATCTTGTTTATACATTAAAA---
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81435973 523 + 145441459 TCTTTTT-AATTCAACTCTTCCTGTGCATCACACAAAACAGATT---ATTCTGT-AACTACAGGCAGTCTCCACACATGAGGGGATCCAATCCATAATACAAACCATGAAATG--GGTAAATACTGCCAGAGACTCAGTGT-GCTCTTCACAGGCCTCC--AATAAGCCCTCTAGCATGCACTACTTAGCTGCAGTTCTGTACAA--GCCCTGTGCAT----------------CCGA-TTTTCAAATCTCACGTTACCTGGCAACTGATCATGAATTCCTCGATTTATAGGTGTTGTACAGACTTTACTGAAGTCCAGTGAATCATCCAAAATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACATGTAGAGAGTGCAGGAACTTCTTGGTTGTCCCAGCAATCCTTTATTCTTCCTGCTGCTTCTTCCTAGAAATGA---------AG----------------------------AAAACATGCTTGGGTTT-TCTATATTCACATAGAA-------T----------GTTATTTTCAACAATACCATGA--ACTAGAAAAAGCAACAAAGA-CTTCATTTTACTGCCTACACATCAATGCAC
i mm10.chr7                 I 971 C 0
s canFam3.chr3               54480480 568 +  91889043 CCTTTTC-TATCCAGT-CTTTATATGCAT--CATAAAATAGATTTGCGTATTAGAAATCAAAGGCAGTCTTCACCCAGAGA---ACCCAATGCACAAAGTGAGCTACAAAA-AAGGGCAAGGATTACCAAAGATTCA--GTCATTCTTCACAGG--TCATGAGAAAG--------------CTGCCCAGAAACAGCTCTACATACATACATAGCGTATATACAAAAATATTTGCTCAAGTTTTCAAGTCT-AAGTCACCTGGCAAATGATCATGAATTCCTCGGTTTATGGGTGTAGTGCAGACTCTATTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTTGAAAGATACTAGCATTGCTACATGTGGAGAGCGCAGGTGCTTCCTGGTTGTCTCGACAATCTTTTATCCTTCCAGCTTCTTCTTCCTAGACACAG-----AAAAAAGATATTTAGGTTTTCTTCCTAGATGAAGAAAAGATGCTTAGGTTTCTCTATACTCCTTTACGATAAATACC----------CCTCCTTCCTCCTAAACCAACACTATGAGATAAAGTAACAAGGAGCTGAAATTTCTTGCCTATATATTAAAATGc
i canFam3.chr3              C 0 C 0

a score=129420.000000
s hg38.chr15_KI270850v1_alt    416595 36 +    430880 ttaatgagtgtttactatgagctaagtactcggaaC
s panTro4.chr15              80198666 36 +  99548318 ttaatgagcgtttactatgagctaagtactcggaaC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10213546 36 +  10928107 ttaatgagcgtttactatgagctaagtactcggaaC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17288205 36 - 121039945 TTAGTGAGTGTTTACTATGAGCTAAGTACTCCGAAC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106764999 36 - 170124641 ttaatgagtgtttactatgagctaagtactcggaaC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108488864 36 - 171882078 TTAACGAGGGTTTACTATGAGCTAAGTACTCGGAAC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103256460 36 - 162156779 tTAATGAGTGTTTACTATGAGCTAAGTACTcggaac
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21178911 36 -  24206276 TTAATGAGTGTTTACTATGAGCTAAGTACTTGGAAC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22325515 35 + 158406734 -TAATAAGTGTTTACTATGAGCTAAGTACTCAGAAC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81436496 36 + 145441459 CGAATGAATGTTTATTATTAACAAAGTACTCAGAAC
i mm10.chr7                 C 0 I 678
e canFam3.chr3               54481048  0 +  91889043 C

a score=5406291.000000
s hg38.chr15_KI270850v1_alt    416631 1864 +    430880 TGTAAGAAAAAAAT-ACCAAAATATTCTTGGCCAATTTGTggaaaaatttccacaaaggatactattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtcttttggttgtacaacaagaaggtctgg---acaagaactctttttcagaattggttcaattgatattttgttcctggagtcagaaagtaccttgccagtaaaggactttttttaatatattaaaacacttaatgagtgtttatgatgaacaaggtactcagaagttcttttaatactggacaatgcccctggccacccagaatgccatgaattcaacaacaa------agaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaagacctttaaggctcattacacatgctactctacagaaaggattgttaatgctgtggaagagaaccccaatagagagaaggtcatgaaagtctagaagaattacaccagtgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaataataaattcctgct-----------taaaaaaactgtttccagatgttgtacatgacttcaca-gatttaccacagagccaatacaggaaatcatgaaagaaactgtagatatgacaaaaaaaggttgggagtgaagatttccaagacatggaccttggagaaatccaagagttaa-------cataccagaggaattagcagaagacaatctgatagagatgagtgctccaaaccagtgccagacatggaagacgatgttgaagtagcaatgccagaaaacatattgacattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacagacccttctattacacaggcactgaaactaacgcaaatggtggaattaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagacag-------aaattatttctgtaaagttacactgactgtgcctgcttctccttacatccgctccacatccttccacctttgc--cacccctgag-----------------------------agagcaagaccaatcaatccttcctcttcctcggcctgctcaatgtgaaaacagtaaatatgaagatcttt---atgattcacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaacatt---ttttctctagcctactttatcgtaagaatacgg--tataaaatacatgtaacatacaaaacatgtgatcaactgtttatgttatcggtaaggct-----------------------------------------t-ccggtcaacagcaggctattagtcaagttttgggggagtc-aaagttatacatagatatttgactgt-gggggttggtcctcctaactcccacactgtccaagagtcaactgGactaaaaaccaatgaactgtacattaaaggtgaactttagggtatgtagat----tttatgtcaatacagctgttt--aaaaaTTTTCATtctgccatttattggctgtgtgatatcacagttacttaacctctatccctcagtttccccatttgtgaaatggaaaaaggataccaactttttgatgacatatgtaaagcattttgcatggcatacagtagctgctAATTTGTATCTGCAAACACTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCCAAACTGATTAAGTTATACAACTCTATGTGGTCATTATTAGTACATAC
s panTro4.chr15              80198702 1863 +  99548318 TGTAAGAAAAAAAT-ACCAAAATATTCTTGGCCAATTCGTggaaaaatttccacaaaggatactattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtctttcggttgtacaacaagaaggtctgg---acaagaactctttttctgaattggttcaattgatattttgttcctggagtcagaaagtaccttgccagtaaaggactttttaaaatatactaaaacacttaatgagtgtttatgatgaacaaggtactcagaagttcttttaatactggacaatgcccctggccacccagaatgccatgaattcaacaacaa------agaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaagacctttaaggctcattacacatgctactctacagaaaggatcgttaatgctgtggaagagaaccccaatagagagaaggtcatgaaagtctagaagaattacaccagtgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaataataaattcctgct-----------taaaaaaactgtttccagatgttgtacatgacttcaca-gatttaccacagagccaatacaggaaatcatgaaaaaaactgtagatatgacaaaaaa-ggttgggagtgaagatttccaagacatggaccttggagaaatccaagagttaa-------cataccagaggaattagcagaagacaatttgatagagatgagcgctccaaaccagtgccagacatggaagacgatgttgaagtagcaatgccagaaaacatattgacattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacagacccttctattacacaggcactgaaactaacgcaaatggtggaattaagattggtaccatatagaaacatttttacagaaatgaaaaagcaaaaagtcagtcag-------aaattatttctgtaaagttacactgactgtgcctgcttctccttacatccgctccacatccttccacctttgc--cacccctgag-----------------------------agagcaagaccaatcaatccttcctcttcctcagcctgctcaatgtgaagacagtaaatatgaagatcttt---atgattcacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaacatt---ttttctctagcttactttatcgtaagaatacgg--tataaaatacatgtaacatacaaaacatgtgatcaactgtttatgttattggtaaggct-----------------------------------------t-ccggtcaacagcaggctattactcaagttttgggggagtc-aaagttatacatagatatttgactgt-ggggggtggtcctcctaactcccacactgtccaagagtcaactgGaccaaaaaccaatgaactgtacattaaaggtgaactttagggtatgtagat----tttatgtcaatacagctgttt--aaaaaTTTTCATtctgccatttattggctgtgtgatatcacagttacttaacctctatgcctcagtttccccatttgtgaaatggaaaaaggataccaactttttgatgacatatgtaaagcattttgcatggcatacagtagctgctAATTTGTATCTGCAAACACTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCCAAACTGATTAAGTTATACAACTCTATGTGGTCATTATTAGTACATAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10213582 1862 +  10928107 TGTAAGAAAAAAAT-ACCAAAATATTCTTGGCCAATTCTCTGaaaaatttccacaaaggatactattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggctaactc-tactagttttctacaaatatagtcacgtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtctttcggttgtacaacaagaaggtctgg---acaagaaccctttttctgaattggttcaattgatattttgttcctggagtcagaaagtaccttgccagtaaaggacttttttt-atatgttaaaacacttaatgagtgtttatgatgaacaaggtactcagaagttcttttaatactggacaatgcccctggccacccagaatgccacgaattcaacaacaa------agaggtatacgtgccctcaaatacaacatctctaagttagcctccagatcaaggggtcataaagacctttaaggctcattatacatgctactctacggaaaggattgttaatgctgtggaagagaaccccaatagagagaaggtcatgaaagtctagaagaattacaccagtgacaacgccattattgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------ttaaaaaactgtttccaga---tgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagaaactgtagatatgacaaaaaa-ggttaggagtgaagatttccaagacatggatcttggagaaatccaagagttaa-------cataccaaaggaattagcagaagacaatttgatagagatgagtgttccaaaccagtgccagacaaggaagacgatgttgaagtagcaatgccagaaaacatactcgcattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacagacccttctattatacaggcactgaaactaatgcaaatggtggaattaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagacag-------aaattatttctgtaaagttacactgactgtgcctgcttctccttccatcccctccacatccttccacctctgccacacccctgag-----------------------------acagcaagaccaatcaatccttcctcttccttggcctgctcaacgtgaagacagtaaatatgaagatcttt---atgattcacttccacttaatgaacagtaaacatattttctc-ttatgatttt-ctagtaacatt---ttttctctagcttactttattgtaagaatacag--tataaaatacatgtaacatacaaaatacgcgatcaactgtttatgttattggtaaggct-----------------------------------------t-ctggtcaacagcaggctattagtgaagttttgggggagtc-aaagttatacatagatatttgactgt-gggcgttggtcctcctaactcccacactgtccaagagtcaactgGactaaaaaccaatgaactgtacattaaaggtgaactttagggtatgtagat----tttatgtcaatacagctgttt--aaaaaTTTTCATtctgccatttattggctgtgtgatatcacagttacttaacctctatgcctcagcttccccatttgtgaaatggaaaaaggataccaactttttgatgacatatgtaaagcattttgcatggcatacagtagctgctAATTTGTATCCGCAAACATTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCCAAACTGATTAAGTTATACAACTCTATGTGGTCATTATTAGTACATAC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17288241 1881 - 121039945 TGTAAGAAAAAAAT-ACCAAAATATTCTTGGCCAATTCTTggaaaaatttccacaaaggatattattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggataactc-tactagttttctacaaatatagacaggtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtcttttggttgtacaacaagaaggtctgg---acaagaaccctttctctgaattggttcaattgatattttgttcctgaagtcagaaagtagcttgccagtaaaggactttttta-atatgtaaaaacacttaatgagtgtttatgatgaacgaggtactcagaagttcttttaataccggacaatgcccctggccacccagaatgccatgaattcaacaacaa------agaggtatacatgcccccagatacaacatccctaagtcagcttccagatcaaggggtcataaagacctttaaggatcattacacatgctactctacggaaaggattgttaatgctgtggaagagaaccccaacaaagagaaggtcatgaaagtctaaaagaattacaccagtgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgctaaaaaaaaaaaaaaaaaaactgtttccagatgttgtacatgacttcacaggatttatcacagagccaatacaggaaatcatgaaagaaactgtagatatgacaaaaaa-ggttgggagtgaagatttccaacacatggatcttggagaaatccaagagttaacagacaccataccagaggaattagcagaagacaatttgatagagatgagtgctccaaaccagtgccagacaaggaagacgatgttgaagtagcaatgccagaaaacatattgacattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacggacccttttatttcacaggcactgaaactaacacaaatggtggaattaggattggtaccacgtagaaacatttttacagaaatgaaaaagcaaaaagtcagacag-------aaattatttctgtaaagttacactgactgtgccagcttctccttccatcccctccacatccttccacctctgc--cacccc-gag-----------------------------acagcaagaccaatcaatccttcctcttcctcagcctgctcaacgtgaagacagtaaatatgaagatcttt---atgattcatttccacttaatgaacagtaaatatattttttc-ttatgatttt-ctagtaacatt---ttttctctagcttactttattgtaagaatacat--tataaaatacatgtaacatacaaaatatgcgatcaactgtttatgttattggtaagcct-----------------------------------------tcccggtcaacagcaggctattagttaagttttaggggagtc-aaagttaaacacagatatttgactgt-gggggttggtcctcctaactcccacactgtccaagagtcaactgGactaaaaaccaatgaactgtacattaaaggtgaactttagggtatgtagac----tttaggtcaatacagctgttt--aaaaaTTTTCATtctgccatttattggctgtgtgatatcacagttacttaacctctatgcctcagtttccccatttgtgaaatggaaaagggataccaactttttgatgacatatgtaaagcattttgcacggcatacagtagctgctAATTTGTATCCACAAACATTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCCAAACTGATTAAGTTATACAACTCTATGTGGTTATTATTAGTACATGC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106765035 1861 - 170124641 TGTAAGAAAAACAT-ACCAAAATATTCTTGGCCAATTCTTggaaaaatttccacaaaggatattattaaggaaaagaatcaagcaccaggatttaaggcaagaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagacaacaagaaccctttttctgaattggttcaattgatattttgttcctagagtcagaaattaccttgccagtaaaggactttttt--atataataaaacacttaatgagtgtttatgataagcaaggtactcagaagttctttaaatactggacaatgcccctggctacccagaatgccataaattcaacaacaa------agaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgc-gtggaagagaaccccaacagagagaatgtcatgaaagtctggaagga-tacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtttccagacgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactatagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatggatcttggagaaatccaagagttaacagacaccataccagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagacgatgttgaagtaccaatgccagaaaacaaattgacattagatgatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggacccttctattatacaggcactgaaactaatgcaaaca---gaagaaggattggtaccacatagaaacatttttacagaagtgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtgcctgcttctccttccatcccctccacatccttccacctctgc--cacccc-gag-----------------------------acagcaagaccaatcaatcccccctcttcctcagcctgctcaatgtgaagatggcaaatatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgtttatgttattggtaaggct-----------------------------------------t-ctggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgactgtggggggttggtcctcctaactcccacactgtccaagagtcaactgGactaaaaacccatgaactgtacattaaaggttaactttagggtaggtagat----tttatgtcaatacagctgttttaaaaaattttcattctgccatttactggctgtgtgatgtcacagttacttaacctctatgcctcagtttccccacttgttaaatggaaaaaggatacaaactttttgatgacatatgtaaagcattttgcatggcatacagta---GTTATTCTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAATCACCCAAACTGATTAAGTTATACAACTGTATGCGGTCATTATAAGTACATAC
i rheMac3.chr7              C 0 I 22
s macFas5.chr7              108488900 1863 - 171882078 TGTAAGAAAAAAAT-ACCAAAATATTCTTGGCCAATTCTTggaaaaatttccacaatggatattattaaggaaaagaatcaagcaccaggatttaaggcaagaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaaactgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagacaacaagaaccctttttctgaattggttcaatggatattttgttcctagagtcagaaatcaccttgccagtaaaggactttttt--aTATAATAAAACACTTAATGAGTGTTTATGATAAGCAAGGTACTCAGaagttctttaaatactggacaatgcccctggctacccagaatgccataaattcaacaacaa------agaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgc-gtggaagagaaccccaacagagagaatgtcatgaaagtctggaagga-tacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtttccagacgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactgtagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatggatcttggagaaatccaagagttaacagacaccatagcagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagacgatgttgaagtagcaatgccagaaaacaaattgacattagatgatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggacccttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtgcctgcttctcctgccatcccctccacatccttccacctctgc--cacccc-gag-----------------------------acagcaagaccaatcaatcccccctcttcctcagcctgctcaatgtgaagatggcaaatatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgtttatgttattggtaaggct-----------------------------------------t-ctggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgactgtggggggttggtcctcctaactcccacac-gtccaagagtcaactgGactaaaaacccatgaactgtacattaaaggttaactttagggtaggtagat----tttatgtcaatacagctgttttaaaaaattttcattctgccatttactggctgtgtgatgtcacagttacttaacctctatgcctcagtttccccacttgttaaatggaaaaaggatacaaactttttgatgacatatgtaaagcattttgCATGGCATACAGTA---GTTATTCTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAATCACCCAAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i macFas5.chr7              C 0 I 13
s papAnu2.chr7              103256496 1861 - 162156779 tgtaagaaaaaaat-accaaaatattctTGGCCAATTCTTGGAAAAATTTCCACAAAGGATATTATTAAGGAGAAGAATCAAGCACCAGGATTTAAGGCAAGAAGGGGTAGGCTAACTC-TACTAGTTTTCTACAAATATAGTCAGGTTTATGATTAGGATTGCCTTTATCTATAAAGCTGCTAACCTCTGGACCTTaagggaaaaca-aaacaccagctGCCAGTCTTTC-GTTGTACAACAAGAAGGTCTAGACAACAAGAACCCTTTTTCTGAATTGGTTCAATTGATATTTTGTTCCTAGAGTCAGAAATTACCTTGCCAGTAAAGGactttttt--atataataaaacactTAATGAGTGTTTATGATAAGCAAGGTACTCAGAAGTTCTTTAAATACTGGACAATGCCCCTGGCTACCCAGAATGCCATAAATTCAACAACAA------AGAGGTATACATGCCCCTAAATACAACATCTCTAAGTCAGCCTCCAGATCAAGGGGTCATAAGGACCTTTAAGGCTCATTACACATGCTACTCTATGGAAAGGATTGTTAATGC-GTGGAAGAGAACCCCAACAGAGAGAATGTcatgaaagtctggaaggattaCACCAGTGACAATGCCATCACTGTTACAGAAAAATCCATGAAAGCCATCATGCCCaaaacaataaattcctgct-----------AAAGAAAACTGTTTCCAGACATTGTAcatgacttcacaggatttacCACAGAGCCAATAcaggaaatcatgaaagagacTGTAGATATGACAAAAAA-GGTTGGGAGTGAAGGTTTCCAAGACATGGATCTTGGAGAAATCCAAGAGTTAACAGACACCATACCAGACGAATTAGCAGAAGACAATTTGATAGAGATGAGTGCTCCAAACCAGTACCAGACAAGGAAGACGATGTTGAAGTAGCAatgccagaaaacaaattgacattaGATGATCTGGC-AAAGGGTTCCGATAATTCAagactgcttttgacttcttttacaaTATGGACCCTTCTATTATACAGGCACTGAAACTAATGCAAACAGTGGAAGAAAGATTGGTACCacatagaaacatttttacagaaatgaaaaagcaaaaagt----c---------aaattatttctgtaaagttacaCTGACTgtacctgcttctccttccatCCCCTCCacatccttccacctctgc--cacccc-aag-----------------------------acagcaagaccaatcAATCCCCCCTCTTCCTCAGCCTGCTCAATGTGAAGATGGCAAATATGAAGATCTTT---ATGAtacacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgtttatgttattggtaaagcT-----------------------------------------T-CTGGTCAACAGCAGGCTactagttaagttttgggggagtc-aaagtTATACATAGATTTTTGACTGTGGGGGGTTGGTCCTCCTAACTCCCACACTGTCCAAGAGTCAACTGGACTAAAAACCCATGAACTGTACATTAAAGGTTAACTTTAGGGTAGGTAGAT----TTTATGTCAATacagctgttttaaaaaattttcattctgccatttactggctgtgtgatgtcacagttacttaacctctatgcctcagtttccccacttgttAAATGGAAAAAGGATACAAACTTTTTGATGACATATGTAAAGCATTTTGCATGGCATACAGTA---GTTATTTTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCCAAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i papAnu2.chr7              C 0 I 13
s chlSab2.chr29              21178947 1904 -  24206276 TGTAAGAAAAAAAT-ACCAAAATATTCTTGGCCAATTCTTggaaaagtttccacaaaggatattattaaggaaaagaatcaaccaccaggatttaaggcaagaaggggcaggctaaccc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagacaacaagaaccctttttctgaattggttcaattgatattttgttcctagagtcagaaattaccttgccagtaaaggactttttt--aTATAATAAAACACTTAATGAGTGTTTATGATAAGCAAGGTACTCAGaagttctttaaatactggacaatgcccctggctacccagaatgccataaattcaacaacaa------agaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgc-gtggaagagaatcccaacagagagaatgtcatgaaagtctggaaggattacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtttccagacgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactgtagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatagatcttggagaaatccaagagttaacagacaccataccagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagacgatgttgaagtagcaatgccagaaaacaaattgatattagatgatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggacccttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtgcctgcttctcc--ccatcccctccacatccttccacctctgc--cacccctgag-----------------------------acagcaagaccaatcaatcccccc-cttcctcagcctgctcaatgtgaagatggcaaatatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctaataatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatataaaatatgcgatcaactgtttatgttattggtaaggccaataactggtaagaccaataattggtaaggccaataattggt-aaggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgattgtggggggttggtcctcctaactcccacactgtccaagactcaactgGactaaaaacccatgaactgtacattaaaggttaactttagggtaggtagat----tttatgtcaatacagctgttttaaaaaattttcattctgccatttactggctgtgtgatgtcacagttacttaacctctatgcctcagtttccccacttgttaaatggaaaaaggatacAAACTTTTTGATGACATATGTAAAGCATTTTGCATGGCATACAGTA---GTTATTTTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCCAAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i chlSab2.chr29             C 0 I 2
s calJac3.chr6               22325550 1819 + 158406734 TGTAAGAAAAAAATAACCATAATATTTTtggccaattcttggaaagaaatccataaaggatactattaaggaagcaaatcaagcaccaggatttagggcaagaagaggtaggctaacttatattagttttctacaaatatagtcaggtttatgattaggactgcctttatctaaaaagctgctagcatctgtgccttaaggaaaaagataaacaccagctgccagcctttcagctatacaagaagaagatctggacaacaagaaccctttttctggattggttccattgatgtcctgtccctgaagtcaggaagtagcttgcgagaaagggacttgctt--atatagtaaaacacttaatgagtgtttatg---agcaaggtattcagaagttcttttaatattggacaatgccccaaaccactcagaatgctatgattttaacaacaatttaacagaggtatacatgccccaaagtacaacatctctaagtcagcctccagatcaagaggtcataaggacctttaaggctcattacacatgctactctatggaaaggactattaatgctgtggaagagaatgccaatagagagaacatcatgaaagtctggaaagattacaccattgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaacaataaaatcctgct-----------agagaaaacggtttccagatgttatacatgacttcacaggatttaccacagagccaatacaggaaactatgaaagagactatagatatgacaaaaaa-gattgagagtgaaggttt-----acatggaccttggagaaatccgagtgttaacagacaccataccagaggaattaacag-agacaatttgatagagatgagtgttccaaaccagtgccagacaaggaagacgatgttgaagtaccaacgtcagaaaacaaattgacatttgatgatctggcagaagggttccaattattcaagactgcttttgacttcttttacaatatatacccttctattatacaggcactgaaactaacgcaaacagtggaagaaggattggtacagtatagaaacatttttagagaaatgaaaaagcaaaaagtcacacagaaattgcgaattatttctgtaaagttacactgactgtgcctgcttttccttccatcccctccacgtccttccacctctgc--cacccctgagacagcaaatagttatacataactagatacacagcaagaccaatcaatccctcctcttcctcagcctcctcaacgtaaagatggcaaatgtgaagatctttatgatgattcgcttccacttaatgaacagtaaatatattttctctttatgattttcctagtaacattttcttttctctagcttactttattgtaagaatacaggatatataatacatgaaacatacaaaatatgtgatcagctgtttatgttatcggtaaggcc-----------------------------------------a--------acagtaagcta----ttaagttttaggggagtcaaaagttatacacagatttttgactgg-ggggattggtgctcctaactcccgcattgtccaagagtcaactgAACTAATACTCAATGAATTGTACATTAAAGGTGAACTTTAGGTTATGTAAATTTTATTTATGTCAATACAGCTATTT--AAAaattttttttctgctgtttactggctgtgtgatgtcatagttacttaacctccatgc-------------------------------------------------------------tatttt-------------------------tgtatctgaaaaCATTAATTATTAAAT-----AGTGGTAAGTACCAAGAGTGGCAAAG-CACCCAAACTGATTAAGTTATACAATTCCATGTGGTCACTGTAAGAACATAC
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81436532  678 + 145441459 I
e canFam3.chr3               54481048    0 +  91889043 C

a score=4406.000000
s hg38.chr15_KI270850v1_alt    418495 3 +    430880 AAC
s panTro4.chr15              80200565 3 +  99548318 AAC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10215444 3 +  10928107 AAC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17290122 3 - 121039945 AAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108490776 3 - 171882078 AAT
i macFas5.chr7              I 13 I 6
s papAnu2.chr7              103258370 3 - 162156779 aat
i papAnu2.chr7              I 13 I 6
s chlSab2.chr29              21180853 3 -  24206276 ATT
i chlSab2.chr29             I 2 I 17
s calJac3.chr6               22327369 3 + 158406734 AAC
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048 0 +  91889043 C
e rheMac3.chr7              106766896 22 - 170124641 I

a score=270767.000000
s hg38.chr15_KI270850v1_alt    418498 100 +    430880 TTTATTAACTGGCATGAGAAGATGGGTAAGACA----TTACCGAATGAAAAAAGAACTCCT-------------------------------ATATATATATATA--AAAAATCATGAACCCTTACACAaaaactat
s panTro4.chr15              80200568 102 +  99548318 TTTATTAACTGGCATGAGAAGATGGGTAAGACA----TTACCGAATGAAAAAAGAACTCCt-------------------------------atatatatatatataaaaaatCATGAACCCTTACACAAAAACTAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10215447 100 +  10928107 TTTATTAACTGGCATGAGAAGATGGGTAAGACA----TTACCGAATGAAAAAAGAACTCtt-------------------------------atatatatatata--taaaatCATGAACCCTTACACAaaaactat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17290125 100 - 121039945 TTTATTAACTGGCATGAGAAGATGGGTAAGACA----TTAGTGAATGAAAAAAGAACTCCT-------------------------------ATATATACATATA--TAAAATCATGAACCCTTACACcaaaactat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106766918 104 - 170124641 TTTATTAACTGGCATGAGAAAATGGGCAAGACATTACTTACTGAATGAAAAAAGAAATCTT-------------------------------ATATATACATATA--TAAAATCATGAACCCTTACACAAAAACTAT
i rheMac3.chr7              I 22 C 0
s macFas5.chr7              108490785 104 - 171882078 TTTATTAACTGGCATGAGAAAATGGGCAAGACATTACTTACTGAATGAAAAAAGAAATCCT-------------------------------ATATATACATATA--TAAAATCATGAACCCTTACACAAAAACTAT
i macFas5.chr7              I 6 C 0
s papAnu2.chr7              103258379 104 - 162156779 tttattaactggCATGAGAAAATGGGCAAGACATTACttactgaatgaaaaaagaaatcct-------------------------------atatatacatata--taaaatcatgaaCCCTTACACAAAAACTAT
i papAnu2.chr7              I 6 C 0
s chlSab2.chr29              21180873 104 -  24206276 TTTATTAACTGGCATGAGAAAATGGGCAAGACATTACTTACTGAATGAAAAAAGAAATCCT-------------------------------ATATATACATATA--TAAAATCATGAAcccttaaacaaaaactat
i chlSab2.chr29             I 17 C 0
s calJac3.chr6               22327372 129 + 158406734 --TGTTAACTGGCATGATAAGACGGATAAGCCA----TTAATGAATGAAAAAAAATTCTCTCTcatacacacacacacacacacacGTAAACGTATATACGTATA--AAAAATCAGGAACCCTTACACAaaaactat
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048   0 +  91889043 C

a score=442014.000000
s hg38.chr15_KI270850v1_alt    418598 135 +    430880 tcttttggtattccctatctcggtaaataacaccaccatccaccagatgcccaaagcagaaatgtaggtaccattcttcactccggtctccctcactctccacagccaatGCCCAACATAAGAAGCAATGAAATA
s panTro4.chr15              80200670 135 +  99548318 TCTTTTGgtattccctatctcggtaaataacactaccatccaccagatgcccaaagcagaaacgtaggtaccattcttcactccagtctccctcactctccacagccaatGCCCAACATAAGAAGCAATGAAATA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10215547 135 +  10928107 tcttttggtattccctatctcggtaaataacactaccatccaccagatgcccaaagcagaaatgtaggtaccattcttcactccagtctccctcactctccacagccaatGCCCAACATAAGAAGCAATGAAATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17290225 135 - 121039945 tcttttggtattccctatcttggtaaataacactaccatccaccagatgcccaaagcagaaatgtaggtaccattcttcactccagtctccctcactctccatagccaatGCCCAACATAAGAAGCAACGAAATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106767022 130 - 170124641 TCTTTTGgtattccctatctcagtaaataatactaccatccaccagatgcccaatgcagaaatgtaggtaccattcttca-----gtctccctcactctccacagtcaatGCCCAAAATAAGATGCAATGAAATA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108490889 130 - 171882078 TCTTTTGgtattccctatctcagtaaataacactaccatccaccagatgcccaatgcagaaatgtaggtaccattcttca-----gtctccctcactctccacagtcaatGCCCAAAATAAGATGCAATGAAATA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103258483 130 - 162156779 TCTTTTGGTATTCCCTATCTCAGTAAATAACACTACCATCCACCAGATGCCCAATGCAGAAATGTAGGTACTATTCTTCA-----GTCTCCCTCACTCTCCACAGTCAATGCCCAACATAAGAAGCAATGAAATA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21180977 130 -  24206276 tcttttggtattccctatctcagtaaataacactaccatccaccagatgcccaatgcagaaatgtaggtaccattcttca-----gtctccctcactccccacagtcaatGCCCAACATAAGAAGCAATGAAATA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22327501 131 + 158406734 tcttttggtgttctctatcttggtaaataaaactaccatccacccaatgcccaaagcagaaatgcaagtatcattcttcactctagtctccctcactcttcacatccaatgtccaac----taagcaaTGAAACA
i calJac3.chr6              C 0 I 304
s canFam3.chr3               54481048 123 +  91889043 tcccttggtattctgtagctcagcagacaacactacca-------gttgtctctgacagaaatcttggtaccattcttca-----ttctttctcactcatcacatccaatGCCTGACATAGTAAGCAATGAAATA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I

a score=13474.000000
s hg38.chr15_KI270850v1_alt    418733 6 +    430880 ---TTGGTT
s panTro4.chr15              80200805 6 +  99548318 ---TTGGTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10215682 6 +  10928107 ---TTGGTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17290360 6 - 121039945 ---TTGGTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106767152 6 - 170124641 ---TTGGTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108491019 6 - 171882078 ---TTGGTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103258613 6 - 162156779 ---TTGgtt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21181107 6 -  24206276 ---TTGGTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22327936 6 + 158406734 ---ttggcc
i calJac3.chr6              I 304 C 0
s canFam3.chr3               54481171 6 +  91889043 CCACCG---
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I

a score=1713988.000000
s hg38.chr15_KI270850v1_alt    418739 507 +    430880 GACAGATTGAGTTTTTTAAGGGG--AGCCTGCCTCATC-AGTTCTATTATCCTCAATTATCTTGCGGA----AAAC-AAAAACAGACCAAGTAATGAA-ACTGGCACTTAATATCTCATAAGCTGGTCACATCAAAACAAAACAAGAAGAGGCCCAATGTCATTTTGTTTGGCCTACTAAAATCCAAGTGAGCATGAGAATGACCAAGAGCATTTACAGTTTTACCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACGTCAGCCTCAAGTTCTTG--AAGATTGGT---ACCCTCTGCAAACTGTGAAGACGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGCTGATTCTCAATTTCAGGAAGGCAACTTCATGAAGGCTAAGATGCAAAGATTTA----TAACCTGCagagaggaggtctcgctgtgtt
s panTro4.chr15              80200811 510 +  99548318 GACAGATTGAGTTTTTTAAGGGG--AGCCTGCCTCATC-AGTTCTATTATCCTCAATTATCTTGCGGA----AAAC-AAAAACAGACCAAGTAAGGAA-ACTGGCACTTAATATCTCATAAGCTGGTCACATCAAAACAAAACAAGAAGAGGCCCGATGTCATTTTGTTTGGCCTACTAAAATCCAAGTGAGCATGAGAATGACCAAGAGCATTTACAGTTTTACCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACGTCAGCCTCAAGTTCTTG--AAGACTGGTGGTACCCTCTGCAAACTGTGAAGAAGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGCCGATTCTCAATTTCAGGAAGGCAACTTCATGAAGGCTAAGATGCAAAGATTTA----TAACCTGCagagaggaggtctcgctgtatt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10215688 488 +  10928107 GACAGATTGAGTTTTTTAAGGGG--AGCCTGCCTCATC-AGTTCTATTATCCTCAATTATCTTGGGGAAAACAAAC-AAAAACAGACCAAGTAAGGAA-ACTGGCACTTAATATCTCATAAGCTGGTCACATCAAAACAAAACAAGAAGAGGCCTGATGTCATTTTGTTTGGCCTACTAAAATCCAAGTAAGCATGAGAATGACCAAGAGTATTT--AGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAGCTTGAGCCTCACATCAGCCTCAAGTTCTTG--AAGACTGGT---ACCCTCTGCAAACTGTGAAGATGACCAAAATACACAATACTGCAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGTGCCATTG---------------------ACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGCTGATTCTCAATTTCAGGAAGGCAACTTCATGAAGGCTAAGATGGAAAGATCTA----TAACCTGAagagaggagatctcgctgtgtt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17290366 513 - 121039945 GACAGATTGAGTTTTTTAAGGGG--AGCCTGCCTCATC-AGTTCTATTATCCTCAATTATCTTGGGGAAAACAAAC-AAAAACAGACCAAGTAAGGAA-ACTGGCACTTAATATCTCATAAGCTGGTCACGTCAAAACAAAACAAGAAGAGGCCTGTTGTCATTTTGTTTGGCCTACTAAAATCCAAGTAAGCATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAAGGACAAACTTGAGCCTCACATCAGCCTCAAGTTCTTGAAAAGACTGGT---ACCCTCTGCAAACTGTGAAGACGACCAAAATACACAATCCTGCAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAGCTGTAGATTTCT--AATCTGATTCTCAATTTCAGGAAGGCAACTTCATGAAAGCTAGGATGCAAATATTTA----TAACCTGCagagaggaggtctcgctgtgtt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106767158 496 - 170124641 GACAGAT----TTTTTTAAGAGG--AGCCTACCTCATC-AGTTCTATTATCCTCAATTATCTTGGGGA----AAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAACAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACAGGCCTGATGTCACTTTGTTTGGCCTACTGAAATCCAAGTAAGCATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCCAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCGAAATACACAATCCTGC-AGGTTGTTTTCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGACGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTACagagaggaggtctcgctgtgtt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108491025 496 - 171882078 GACAGAT----TTTTTTAAGAGG--AGCCTGCCTCATC-AGTTCTATTATCCTCAATTATCTTGGGGA----AAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAACAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACAGGCCTGATGTCACTTTGTTTGGCCTACTGAAATCCAAGTAAGCATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCCAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCGAAATACACAATCCTGC-AGGTTGTTTTCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGATGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTACagagaggaggtcttgctgtgtt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103258619 500 - 162156779 gacagat----ttttttaagAGG--AGCCTGCCTCATC-AGTTCTATTATCCTCAATTATcttggggaaaacaaac-aaaaacagaacaagtaACGAA-ACTGGCACTTAATAT---ATAAACTGGtcacatcaaaacaaaacaagaacaggCCTGATGTCACTTTGTTTGGCCTACTGAAATCCAAGTAAGCATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCCAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCAAAATACACAATCCTGC-AGGTTGTTTCCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACACCTGTAGATTTCT--AGGACGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTACAGAGaggaggtctcgctgtgtt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21181113 499 -  24206276 GACAGAT----TTTTTTAAGAGG--AGCCTGCCTCATC-AGTTCTATTATCCTCAATTATCTTGGGGAAAACAAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAATAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACAGGCCTGATGTCACTTTGTTTGGCCTACTAAAATCCAAGTAAGCATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCAAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCAAAATACACAATCCTGC-AGGTTGTTTTCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACAC-AGGCCCTTTTCACAACTGTAGATTTCT--AAGACGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTGCagagaggaggtctcgctgtgtt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22327942 513 + 158406734 AACAGGTTAAGTCTTTTAAGAGG--AGCCTGCCTCATC-AGTTCTATCATCCTCAATTATCTTGGGGAAAACAAAC-AAAAACAGACCAAGTAAAAAA-ATTGGCACTTAATATCTCACAAGCTGTTCACATCACAACAAAACAAGAACAAGCCTGGTGTCACTTTGTTTAGCCTACTAAAATCCAAGTAAGCATGAGAATGATCAGAAGCATTTACAGTTTTACCAACTCTGCAAGATGACCTTAAAGGGACAAACTTGAGCCTCATATCAGCCTCAAGTTCTTCAAAAGACTGGT---ATCCTTTGCAAACTGTTAAGATGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTGTAGAGCGGCGCCATTGAGAATTGTTAAATCCAGTGGCACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGATGATTCTTAACCTCACAAAAGCAACTTCATAAAGGCTAAGATGCAAATATTTA----CAATTTGCagagaggaggtctcactgtgtt
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81437210 425 + 145441459 GACAGACTTAGCTTTCTAAGAAGAAAATCAGCATAAGA-AGTGCAATCATTTTAAAATAACTTGGGAA-------------TCAGTACAAGTATGGAAGACTGGAAC-TAACTT---ATAACTTCATT-CATCAAAACAGAATA-------GCACAGTGTTACTTTGTCTAGCCTATTGTAATCCAGGTGATCATGAGAAAGACCAAATGCATTTACAG-TTTACAAA--CTGTAGAATAGCATTGAATGAACAAATTCATATCCTACCTTGGCATCAAGCTTTTG--AAAATAGAT---ACCCTCTGCCCCCTTTGAAGGCTACCAGAATAATCAATTCTACAAGGTTGTTTTGCCAAGCCCTACTGACTCTCACCACTCAT------------------------AGGATCTTTTCACAATTGTACATTTATAAAAGATGATGTTCAACTTCACT-TTGTAACCTCATTAAG--------GCACACATCT-----------------------------------
i mm10.chr7                 I 678 C 0
s canFam3.chr3               54481177 475 +  91889043 GACAGTC----ATTTTTAAGTAA--AGTCTAATTAATCAAGCTCTAGGATTCCCAATTACCTTGGGGA----AAACAAAAAACAGATGAAGTAAGGAA-ACTAGAACCTAGGATCAGAC-AGCTGGTCACTTCAAAATAAAATTTTAAAAAGCTGAGTG--ACTATGTTTAGCCTATTGAAATTCAGGTAAGCATGAGTATGGCCAGAG-----------------------ACAGGACAGCCTTAAAGGGACAAACTTGAGTCCCATATCATTCTCAAGTTCTTGAGAAATCTGGC---ATCCTTTGCAAGCTGTGAGGATGACCAGGATACTCAGTCCTACAAGGTTGTTTCCCCAAGCCTCCCAGAGAGCCACCACTGAGAACAGTTAAAGCCA--CACACACAAGGGTCCTTCCACAACTGTAGATTTCT--AAG--GATTCTCAACCTCGCCAAGGCAACATCACAAAGGCTAAGATGCACACATTTACCATCAATCTTCAG------GTTTTTGttttgtt
i canFam3.chr3              C 0 I 119

a score=186211.000000
s hg38.chr15_KI270850v1_alt    419246 62 +    430880 gcccaggctgaacttgaaactcctgggctcaagtgctcctcccaccttggcctcctgagtag
s panTro4.chr15              80201321 62 +  99548318 gcccaggctgaacttgaaactcttgggctcaaatgctcctcccaccttggcctcctgagtag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216176 62 +  10928107 gcccaggctgaacttgaaactcctgggctcaagtgctcctcccaccttggcctcctgagtag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17290879 61 - 121039945 gcccaggctggacttgaaactcct-ggctcaagtgctcctcccaccttggcttcccgagtag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106767654 62 - 170124641 gcccaagctggacttgagactcctgggctcaagtgctcctcccatcttggcctcccgagtag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108491521 62 - 171882078 gcccaagctggacttgagactcctgggctcaagtgctcctcccatcttggcctcccgagtag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259119 62 - 162156779 gcccaagctggacttcagactcctgggctcaagtgctcctcccaccttggcctcccgagtag
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21181612 62 -  24206276 gcccaagctggacttgagactcctgggctcaagtgctcctcccaccttggcctcccgagtag
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22328455 62 + 158406734 gcccaggctggacttgaaagtcctaggctcaaatgctcctctcacctcagcctcccaagtaa
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81437635  0 + 145441459 C
e canFam3.chr3               54481652 119 +  91889043 I

a score=606616.000000
s hg38.chr15_KI270850v1_alt    419308 170 +    430880 ctgagactacaggcacgtgcc----------------------attgcCTAG------------CACAATCtgcattatcttaaggctacatgcttcattc-ttcactgcCTAATAAACATTAGCCGACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
s panTro4.chr15              80201383 170 +  99548318 ctgagactacaggcacgtgcc----------------------attgcCTAG------------CACAATCTGCATTATCTTAAGGTTACATGCTTCATTC-TTCACTGCCTAATAAACATTAGCCGACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216238 169 +  10928107 ctgagacgacaggcacgtgcc----------------------actgcCTAG------------CACAATCTGCA-TATCTTAAGGCTACATGCTTCATTC-TTCACTGCCTAATAAACATTAGCGGACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17290940 169 - 121039945 ctgagagtacaggcacgtgcc----------------------attgcctgg------------cAcaatctgca-tatcttaaggctacatgcttcattc-ttcaCTGCCTACTAAACATTAGCCAACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106767716 169 - 170124641 ctgagactacaggcgcttgcc----------------------actgcctgg------------cACAATCTGCA-TATCTTAAGGCTACATGCTTCATTC-TTCACTGCTTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108491583 169 - 171882078 ctgagactacaggcgcttgcc----------------------actgcctgg------------cACAATCTGCA-TATCTTAAGGCTACATGCTTCATTC-TTCACTGCTTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259181 169 - 162156779 ctgagactacaggcacttgcc----------------------actgcCTGG------------CACAATCTGCA-TATCTTAAGGCTACATGCTTCATTC-TTCACTGCTTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAGCGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21181674 169 -  24206276 ctgagactacaggcgcttgcc----------------------actgcccgg------------cACAATCTGCA-TATCTTAAGGCTACATGCTTCATTC-TTCACTGCCTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAAGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22328517 169 + 158406734 ccgagactacaggcacatgcc----------------------attgcctgg------------cATAATCTACA-TATCTTAAGGCTACATACTTCATTC-TTCACTGCCTAATAAACATTAGCCAACTTACTGCTCTCTATAGTGAGCACCCCAAGGAGCAGCAGATTATACATGAACTAAACCAAAATTAAGTTTCTAAGTT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81437635 134 + 145441459 -----------------------------------------------------------------ACAATTTGCA-CATGTTAAGGCTATATACTTCATTCATTCACTGCTTAATAAGCATTA----ATTGTCCTCGATCTATAGGCAACACCTCAAGGGTTAA-ACATGAAACAAAGATCTAATTACAAGAAAGTTTGGAAGTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54481771 202 +  91889043 gtgagactctaggatcatgccctgggccgaaggcagacacccaactgctgagccacccaggcgtcccAATCTTCG-GGTCTTAAGGTTACATGCTTTATTCACTCACTGTCTCATCAACATTAACCAACAGTTTGCTATGTACAGTAAGCACCTGAAGGGTAGGCAGATTAGACA--GACTCAACCAAAAGAGATTTCTGAAGTC
i canFam3.chr3              I 119 C 0

a score=30744.000000
s hg38.chr15_KI270850v1_alt    419478  9 +    430880 TGG-AAAAGA
s panTro4.chr15              80201553  9 +  99548318 TGG-AAAAGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216407  9 +  10928107 TGG-AAAAGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17291109  9 - 121039945 TGG-AAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106767885  9 - 170124641 TGG-AAAAGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108491752  9 - 171882078 TGG-AAAAGA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259350  9 - 162156779 TGG-aaaaaa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21181843  9 -  24206276 TGG-AAAAGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22328686 10 + 158406734 TGGAAAAAGA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54481973  9 +  91889043 TAG-AAAGGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81437769  0 + 145441459 C

a score=404685.000000
s hg38.chr15_KI270850v1_alt    419487 141 +    430880 ACTTTTGGC------------------------AGG-caggagctcaaaaccagcctgggcaacatggcgaaaccctgtttctac-aaaaaatacaaaacattagacaggtatggtggtacatgcctgtagtcccagctactcaggaagctgaggtaggaggaatgc
s panTro4.chr15              80201562 141 +  99548318 ACTTTTGGC------------------------AGG-caggagctcaaaaccagcctgggcaacatggcgaaaccctgtttctac-aaaaaatacaaaacattagacaagtatgatggtacatgcctgtagccccagctactcaggaagctgaggtaggaggaatgc
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216416 139 +  10928107 ACTTTTGGG------------------------AGG-caggagctcaaaaccagcctgggcaacatggcgaaacc--gtttctac-aaaaaatacaaaacattagacaggtatggtggtacatgcctgtagtcccagctactcaggaagctgaggtaggaggaatgc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17291118 141 - 121039945 ACTTTTGGG------------------------AGG-caggagctcaagaccagcctgggcaacatggcgaaaccctgtttctac-aaaaaatacaaaacattagacaggtatggtggtacatgcctgtagtcccagctactcaggaagctgaggtaggaggaatgc
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106767894 166 - 170124641 ACTtttgggaggctgggatgggtagaatgtttgagg-caggagttcaagaccagcctgggcaacacagcaaaaccctgtttctacaaaaaaatacgtaacattagacaggtatggtggtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108491761 166 - 171882078 ACTtttgggaggctgggacgggtggaatgtttgagg-caggagttcaagaccagcctgggcaacacagcaaaaccctgtttctacaaaaaaatacgtaacattagacaggtatggtggtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259359 166 - 162156779 acttttgggaggccaggacgggTGGAATgtttgagg-caggagttcaagaccagcctgggcaacagagcaaaactctgtttctacaaaaaaatacgtAACATTAgacaggtatggtggtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21181852 165 -  24206276 ACTtttgggaggccaggacgggtggaatgtttaagg-caagagttcaagaccagcctgggcaacacagcgaaaccttgtttctac-aagaaatacataacattagacaggtatggtggtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22328696 166 + 158406734 ACTtttgggaggccaggatgggtgggttgcttcaggccaggaattcaagaccagcctgggcaacatgacaaaaccctgtttctac-aaaaaatacaaaacattagctagttgtggttgtacatgcctgtagtcccagctattcatgaagctgaggtgggaggaatgt
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81437769   0 + 145441459 C
e canFam3.chr3               54481982   0 +  91889043 C

a score=210764.000000
s hg38.chr15_KI270850v1_alt    419628 96 +    430880 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacactccagcatgggtgacagagcaagaccctgtctcaaaaaaaaaaaga
s panTro4.chr15              80201703 96 +  99548318 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacactccagcatgggtgacagagcaagaccctgtctcaaaaaaaaaaaaa
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216555 96 +  10928107 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccgcactccagcatgggtgacagagcaagaccttgcctcaaaaaagaaaaaa
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106768060 89 - 170124641 ttgaacccaggaggcagaggtttcagtgagcagagattgtgccaccgcactccagcacgggtgacagagcaagaccctgtctcaaaaaa-------
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108491927 89 - 171882078 ttgaacccaggaggcagaggtttcagtgagcagagattgtgccaccgcactccagcacgggtgacagagcaagaccctgtctcaaaaaa-------
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259525 89 - 162156779 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccgcactccagcactggtgacagagcaagaccctgtctcaaaaaa-------
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21182017 92 -  24206276 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccgcactccagcacgggtgacagagcaagaccctgtctcaaaaaaaag----
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22328862 93 + 158406734 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacatgctagcctgggtg--agagcaagaccctgtctcaaaaaaaaagaa-
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81437769  0 + 145441459 C
e canFam3.chr3               54481982  0 +  91889043 C
e nomLeu3.chr6               17291259  0 - 121039945 C

a score=11061.000000
s hg38.chr15_KI270850v1_alt    419724  9 +    430880 a---------------agaaaaag
s panTro4.chr15              80201799 24 +  99548318 aggaaaagaaagaaaaaGAAAAAG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216651 23 +  10928107 a-aaaaagaaagaaaaaGAAAAGG
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106768149  8 - 170124641 ----------------agaaaaag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108492016  8 - 171882078 ----------------agaaaaag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259614  8 - 162156779 ----------------agaaaaag
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21182109  8 -  24206276 ----------------aaaaaaag
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22328955  8 + 158406734 ----------------agaaaaag
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81437769  9 + 145441459 ---------------AGGACAAAG
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54481982  0 +  91889043 C
e nomLeu3.chr6               17291259  0 - 121039945 C

a score=52806.000000
s hg38.chr15_KI270850v1_alt    419733 18 +    430880 aaCTAAGACCCGATCCTG---
s panTro4.chr15              80201823 18 +  99548318 AACTAAGACCCGATCCTG---
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216674 18 +  10928107 AATTAAGACCCGATCCTG---
i ponAbe2.chr15_random      C 0 C 0
s rheMac3.chr7              106768157 18 - 170124641 aaCCAAGACCCGATCCTG---
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108492024 18 - 171882078 aaCCAAGACCCGATCCTG---
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259622 18 - 162156779 aaccaagaCTCAATCCTG---
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21182117 18 -  24206276 aaCCAAGACCCGATCCTG---
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22328963 18 + 158406734 aaCTAAAACCTGATCCTG---
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81437778 18 + 145441459 AACTAAGATCTGATCACG---
i mm10.chr7                 C 0 I 3
s canFam3.chr3               54481982 21 +  91889043 AACGAAGATCTGATCAGGCTG
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               17291259  0 - 121039945 C

a score=625199.000000
s hg38.chr15_KI270850v1_alt    419751 190 +    430880 TAAACATCCACAACACAGACTACAACGTGCTGTAAATGTACATTGTCCTCCAAGCCAAGGTGGCCT-GGAGGGACAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGG--AG-----AGAAAATTGG
s panTro4.chr15              80201841 190 +  99548318 TAAACATCCACAACACAGACTACAACGTGCTGTAAACGTACATTGTCCTCCAAGCCAAGGTGGCTT-GGAGGGACAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGG--AG-----AGAAAATTGG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216692 169 +  10928107 TAAACATCCATAATACAGACTACAACGTGCTGTAAACGT--------TTCCAGGC--------------ACAGACAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ACAGG--AG-----AGAAAATTGG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17291259 187 - 121039945 tAAACATCCGTAACACAGACTACAACGTGCTGTAAACGTACATTGTTCTCCAAGCCAA---GGCTT-GGAGGGACAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGG--AG-----AGAAAATTGG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106768175 185 - 170124641 TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGTCCTCCAAGCCACCTTGGCTT-----GGACAG-AATATGCCTGGAAATGAGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGG--AG-----AGAAGACTGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108492042 185 - 171882078 TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGTCCTCCAAGCCACCTTGGCTT-----GGACAG-AATATGCCTGGAAATGAGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGG--AG-----AGAAGACTGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259640 185 - 162156779 TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGTCCTCCAAGCCACCTTGGCTT-----GGACAG-AATATGCCTGGAAACGGGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGG--AG-----AGAAGACTGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21182135 185 -  24206276 TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGTCCTCCAAGCCACCTTGGCTT-----GGACAG-AATATGCCTGGAAATGGGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGGGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGG--AG-----AGAAGACTGG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22328981 192 + 158406734 TAAACAACCATAACACAGACTACAGTGTGCTGTAAACATACATTGTCCTCTTAGCCAAGGTGGCTC-AGAGGGAC---AATATGCCTGGAAATGGGGGTAAAGAGGAAATTCA--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCTAGTGTGGTACAGCATTAGGT--ATAGG--AGAGGAAAGAAGATTGG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81437799 191 + 145441459 TAAATAA-CATAATACAAGCTACAACAAGCTGTAAACATATTCTGTCCTCTAACCCCA--TGACTTTGGATGGA--G-AATGTATTTGGAAGCTGGAGAAAGGAAGGGGTCTAGGGAATAACAC-AGAAATCAGAAAGGTATTATATCAAAAGTGTTCCAGAGTGGCAGAGTATTAGGT--ACAGAATAA-----AGGAGACTGG
i mm10.chr7                 I 3 C 0
s canFam3.chr3               54482003 187 +  91889043 TCAACAGCCACCACACAAGCTATAGTTTGCTGGGATCATACATTGTCCTCTCAGCCAAAGGGGCTC---AAAGACAACAATGTACCTGAAAGTACAGG---AAGGAAAAGTCT--GAAGCACAA-AGAGAACAGAGGAGCTT--TATCAAAAGTGGTCCAGTATGGCAAGGTATGGGGTTCTCAGG--AG-----AGCAAACTGG
i canFam3.chr3              C 0 I 354

a score=1063661.000000
s hg38.chr15_KI270850v1_alt    419941 419 +    430880 AAAAGCCTCATATGCCAAATTAAGGAGTCAGCATTGTCTTTCAAT---------ACACAAAATT---------------GTGTCTTTT--CAATACACAAAAATTAA--CCTAGCTT-TTAATTACTGTAATAAAAGTAC--TATATATATATGGAC-----------------------TACATGGATTCCAGATCCTGGCCACATCTAAAGGCAAGTAAATAAC--AAAGTGAGTCTTAGAAGGAGACCACCAGCAACTACATGACAGATAAGTGGCAGAAGGATTAGTGAG-AAAGTACCACAGTAGTCTAGGGAACAGATGCAGACTTGGGAG-----TC---TGGGAGAAA-GGTATTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGTCTG--------------------------------------AAAAAAAAATCTAATTT----AGGAATGTGTCTGGTCACCCTGCCCCACTCCTAATCCTGTT-----AGGAACATACACAC-----------------------------------------------------------CTTCCCAAA
s panTro4.chr15              80202031 419 +  99548318 AAAAGCCTCATATGCCAAATTAAGGAGTCAGCATTGTCTTTCAAT---------ACACAAAATT---------------GTGTCTTTT--CAACACACAAAAATTAA--CCTAGCTT-TTAATTACTGTAATAAAAGTAC--TATATATATATGGAC-----------------------TACATGGATTCCAGATCCTGGCCACATCTAAAGGCAAGTAAATAAC--AAAGTGAGTCTTAGAAGGAGACCACCAGCAACTACATGACAGATAAGTGGCAGAAGGATTAGTGAG-AAAGTACCATAGTAGTCTAGGGAACAGATGCAGACTTGGGAG-----TC---TGGGAGAAA-GGTATTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGTCTG--------------------------------------AAAAAAAAATCTAATTT----AGGAATGTGTCTGGTCACCCTGCCCCACTCCTAATCCTGTT-----AGGAACATACACAC-----------------------------------------------------------CTTCCCAAA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10216861 428 +  10928107 AAAAGCCTCATATGTCAAATTAAGGAGTCAGCATTGTCTTTCAAT---------ACACAAAATT---------------GTGTCCTTT--CAATACACAAAAATTAA--CCTAGCTT-TTAATTACTGTAATAAAAGTAC--tatatatatatggatat----------------atatatatatGGATTCCAGATCCTGGCCACATCTAAAGGCAAGTAAATAAC--AAAGTGAGTCTTAGAAGGAGACCACTAGCAACTACATGACAGATAAGTGGCAGAAGGATTAGTGAG-AAAGTACCACAGTAGTCTAAGGAACAGATGCAGACTTGGGAG-----TC---TGGGAGAAA-GGTATTCCTTAGGAGAGG---AAGG-----AAATCTTACCATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTGA------------------------------------AAAAAAAAAATCTAATTT----AGGAATGTGTCTGCTCACCCTGCCCCACTCCTAATCCTGTT-----AGGAACATACACAA-----------------------------------------------------------CTTCCCAAA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17291446 439 - 121039945 AAAAGCCTCATACGCCAAATTAAGGAGTCAGCATTGTCTTTCGAT---------ACACAAAATT---------------GTGTCTTTT--CAATACACAAAAATTAA--CCCAGCTT-TTAATTACTGTAATAAAAGTAC--tatatatatatatatatatatatatatataaggatatatatatGGATTCCAGATCCTGGCCACATCTAAAGGCAAGTAAAT-----AAAGTGAGTCTTAGAAGGAGACCACCAGCAACTACATGACAAATAAGTGGCAGAAGGATTAGTGAG-AAAGTACCACAGTAGTCTAGGGAACAGATGCAGACTTGGGAG-----TC---TGGGAGAAA-GGTATTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTG-------------------------------------AAAAAAAAAATCTAATTT----AGGAATCTGTCTGGTCACCCTGCCCTACTCCTAA-CCTGTT-----AGGAACATACACAA-----------------------------------------------------------CTTCCCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106768360 384 - 170124641 AAAAGCCTCATATGCCAAATTAAGGAGTTAGCATTGTCT----------------------------------------------TTT--CAATACAC-AAAATTAA--CCTAGTTT-----TTAGTGTAATGAAAGTAC--TATATATATACA--------------------------CATATAGATTCCAGATCTTTGCCACACCTAAAGGCAAGTAAATAAC--AATGTGAGTCTTAGAAAGAGACCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAGTGAG-AAAGTACCACAGTAGTGTAGGGGACAGATGCAGACTTGGGAG-----TC---TGGGAGAAA-GGTATTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTG-------------------------------------GAAAAAAATATATAATTT----AGGAATATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGAACAGGA----------------------------------------------------------------------TTCCCAAA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108492227 385 - 171882078 AAAAGCCTCATATGCCAAATTAAGGAGTTAGCATTGTCT----------------------------------------------TTT--CAATACACAAAAATTAA--CCTAGTTT-----TTAGTGTAATGAAAGTAC--TATATATATACA--------------------------CATATAGATTCCAGATCTTTGCCACACCTAAAGGCAAGTAAATAAC--AATGTGAGTCTTAGAAAGAGACCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAGTGAG-AAAGTACCACAGTAGTGTAGGGGACAGATGCAGACTTGGGAG-----TC---TGGGAGAAA-GGTATTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTG-------------------------------------GAAAAAAATATATAATTT----AGGAATATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGAACAGGA----------------------------------------------------------------------TTCCCAAA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103259825 385 - 162156779 AAAAGCCTCATATGCCAAATTAAGGAGTCAGCATTGTCT----------------------------------------------ttt--caatacacaaaaattaa--cctagTTT-----TTAGTGTAATGAaagtac--tatatatataca--------------------------catatagattcCAGATCCTTGCTACATCTAAAGGCAAGTAAATAAC--AATGTGAGTCTTAGAAAGAGACCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAGTGAG-AAAGTACCACAGTAGTGTAGGGGACAGATGCAGACTTGGGAG-----TC---TGAGAGAAA-GGTATTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGagcctg-------------------------------------gaaaaaaatatataattt----aggaATATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGAACAGGA----------------------------------------------------------------------TTCCCAAA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21182320 385 -  24206276 AAAAGCCTCATATGCCAAATTAAGGAGTCAGCATTGTCT----------------------------------------------TTT--CAATACACAAAAATTAA--CCTAGATT-TTAATTAGTGTAATGAAAGTACTATATATATATACA--------------------------CATATAAATTCCAGATCCTTGCCACATCTAAAGGCAAGTAAATAAC--AATGTGAGTCTTAGAAAGAGACCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAGTGAG-AAAGTACCACAGTAGTGTAGGGGACATATGCAGATTTGGGAG-----TC---TGGGAGAAA-GGTATTCCTTAGGACAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAACCTG-------------------------------------G-AAAAAATATACAATTT----AGGAATATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTT-----AGGA----------------------------------------------------------------------TTCCCAAA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22329173 385 + 158406734 AAAAGCCTCATATGCCAAATTAAGGAGTCAACATTGTCT----------------------------------------------TTT--CAATACACAAAAATTAA--CCTCATTT-TTATTTACTGTAATAATAGTTC--CATA----------------------------------TATATGGATTCCAGATCCTGGCCACATCTAAAGGCAAGTAAATAAA--AGAGAGAGTCTTATAAGAAGACAGTCAGCAACTACATGAAAGGTAAATGGCAGAAAGATTAGTGAG-AAAGTACCACTATAGTCCAGGGGACAGGTGCAGACTTGGGAG-----CC---TTGGAGAAA-GGTATTCCTTAGGAGAAG---AAGG-----AAATCTTACCATTTCAA--------------------------------------------------------------------------------------------------GGGGCCTG---------------------------------------AAAAAAAATCTAATTT----AGGAATATGTCTGGCCACCCTGATCCACTCCTAATCTTGTC-----AGGAAAATATACAA-----------------------------------------------------------CTTCCAAAA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81437990 558 + 145441459 AAAGGCCTCATACAGCAGGTTAAGTACTTAGCAGTATCTTTATATCAGAGCTTACCAAAAAATTT-----------AAAGCCCCCTTTAACAATGCAAAACAAGAAAACCCTAATTTTTTGTTTATTATAATAG-----C--TATA----------------------------------AATAAAATATCAGGACCTTGGCCATATCTGAAGGCAAGAAAATGATCAACTGTAAGTCTT---TATAGAGTGGCAGCAGTTGTAGAAGAGATGA-----AGA-----CAATGAGAAAAGCATGACAATAGT-TAGGAGACACATACAGACTTGGGGAAGCCTTG---TGAGAGAAA-TTCATTCTTCATGAGGGAGGTATAG-----AATGCTTATTCTTTCAAAAAAAATCTAATTTTAAGAATCTATCCAGctgagttcaattcccagcaacaacatggtggctcacaaccatctgtaacaggatccgacgtcctcttctggtgtctgaagaacatgacagtgtactgagtactcatatacatacaataaataaatcttttttaaaaaagaaTCTATCCAGCCACTTTGTCTCACTCCTAATACCATT-----AGGAAGATGCATCA-----------------------------------------------------------TATTCCTGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54482544 465 +  91889043 aaagg---cagacactcaaccactgagccacccgggtac---------------cccCAGAGCTTTCCAAATTTTAAAAGGCCCCTCT--TAACATACAAATACTT---TTTGATTT-TTATTTAGTAGTACAGATATGC--TATAAATCTATG--------------------------TA-------TTCAGATCCTGGTGA-----GGAGATATGTACACAGT---ATGTAAGTTTC---AGGAGATCTCAAGCAACTATGTGAAAGAGGACAG---GAAGAACCAGTGAGGAAAGTAC-ACAGTCATCCAGAGA--AGATGCAGGCCCAGAGA-----CCCTGTGGGAGAAACTGGCTTCCCCAGGAGGAGGGCAAGGTCTTAGAATCTTACCGTCTTGA--------------------------------------------------------------------------------------------------GCAGCCTG----------------------------------------AAAAAAACCCAATTT----AGAAATATGCCTGGCCA----ACTCTACTCCAAATCCCATG-----AGGAACATATACCAAggatgcctgggtggctcagcggttaagcacctgccttcggcccagggtgttatcctggagtcccagg
i canFam3.chr3              I 354 I 130

a score=1960310.000000
s hg38.chr15_KI270850v1_alt    420360 573 +    430880 TCAAGGCAAATGATATCTGACATGCCTCCCTCCCCTTCTCTCACATACATCAAGCCAGAGCTCTAG----CTTAAGATGACAT------TATAATAAAAGTGAATGAGGTGTTCAATGTATATTCCAAACTGTTTCATCTT---A----TAATTACCAATGTTTGCCTTAA-----CCAATTTGGAAGGA-AAAAAAAAAAATCAAAGCCAGGACTGTCAGATGGCGAACAGATCTACTACtctcctt-tgtgtacaatagggataaaag--taatactat--ctcataaggctttttgtgaattaatgcacataaag-tacttagcatagggcctgacatgtaattatgtgctgaaccaacgAATACTGTCTATCAGTCGTATCATTATTA-----TTAT---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAGGATCTATTGGCTCATTAAGTGA----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCTGGTACCCCCTAACTCTTCCTCTTAATCATTT-GACTTAAAATGCTTAATTAAAA-GGCAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
s panTro4.chr15              80202450 574 +  99548318 TCAAGGCAAATGATATCTGACATGCCTCCCTCCCCTTCTCTCACATACATCAAGCCAGAGCTCTAG----CTTAAGATGACAT------TATAATAGAAGTGAATGAGGTGTTCAATGTATATTCCAAACTGTTTCATCTT---A----TAGTTACCAATGTTTGCCTTAA-----CCAATTTGGAAGGAGAAAAAAAAAAATCAAAGCCAGGACTGTCACATGGCGAACAGATCTACTACtctcctt-tgtgtacaatagggataaaag--taatactat--ctcataaggctttttgtgaattaatgcacataaag-tacttagcatagggcctgacatgtaattatgtgctgaaccaacgaatactgtctatcaGTCGTATCATTATTA-----TTAT---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAGGATCTATTGGCTCATTAAGTGA----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCTGGTACCCCCTAACTCTTCCTCTTAATCATTT-GACTTAAAATCCTTAATTAAAA-GGCAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10217289 573 +  10928107 TCAAGGCAAATGATATCTGACATGCCTCCCTCCCCTTCTCTCACATACATCAAGCCAGAGCTCTAG----TTTAAGATGACATTATAA-TATAATAAAAGTGAATGAGGTGTTCAATGTTTATTCCAAACTGTTTCATCTT---A----TAATTACCAATGTTTGCCTTAA-----CCAATTTGGAAGGA-AAAAAAAAAAATCAAAGCCAGGACTGTCAGATGGCGAACAGGTCTACTACtctcctt-tgtgtacaatagggataaaag--taatactat--ctcataaggctttttgtg----aatgcacataaag-tacttagcata-ggcctgacatgtaattacgtgctgaaccaatgaatattgtctatcaGTCATATCATTATTA-----TTAT---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAGGATCTATTGGCTCATTAAGTGA----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCTGGTACCCCCTAACTCTTCCTCTTAATCATTT-GACTTAAAATGCTTAATTAAAA-GACAACAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17291885 573 - 121039945 TCAAGGCAAATGATATCTGACATGCCTCCCTCCCCTTCTCTCACATACATCAAGCCAGAGCTCTAT----TTTAAGATGACATTATAATTACAATAAAAGTGAATGAGGTGTTCAATGTATATTCCAAACTGTTTCATCCT---A----TAATTACCAATGTTTGCCTTAA-----CCAATTTGGAAGGA---AAAAAAAAATCAAAGCCAGGACTGTCAGATGGCGAACAGATCTACTACACTCCTT-TGtgtacaacagggataaaag--taatactat--ctcataaggctttttgtgaattaatgcacataaag-tacttagcatagggcctggcatataattatgtgctaaaccaatgAATA----CTATCAGTCGCATCATTATTA-----TTAT---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAGGATCTATTGGCTCATTAAGTAA----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCCATTCCTGGCACCCCCTAACTCTTCCTCTTAATCATTT-GATTTAAAATGCTTAATTAAAA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106768744 574 - 170124641 TCAAGGCAAGTGATATCTGACATGCCTCCCTCCCCTTCTCTCAAGTACATCAAGCCAGAGCTCTAG----TTTAAGATGACATAAT---TATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATGCTTGCCTTAA-----TCAATTTAGAAGG--AAAAAAAAAAATCAAAGCTAGGACTGTCAGATGGGGAA-AGATCTACTTCtctcctc-tgtgtacaacagggataaacg--taacactat--ctcataaggctttttgtgaattaatgcacacaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaccaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAGGATCTCCTGGCTCATTAAGTGA----------ACCAAAGAcctatggcaactatttctctgaagaccccaggcccttctattcctggtaccccctaactcttcctcctaatcattt-gacttaaaatgcttaattaaaA-GACAAGAGATATGATTCAAATAG----ACCTAACGGCTGAATC---CACTAcag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108492612 574 - 171882078 TCAAGGCAAATGATATCTGACATGCCTCCCTCCCCTTCTCTCAAGTACATCAAGCCAGAGCTCTAG----TTTAAGATGACATAAT---TATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATGCTTGCCTTAA-----TCAATTTAGAAGG--AAAAAAAAAAATCAAAGCTAGGACTGTCAGATGGGGAA-AGATCTACTACtctcctt-tgtgtacaacagggataaacg--taacactat--ctcataaggctttttgtgaattaatgcacacaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaccaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAGGATCTCCTGGCTCATTAAGTGA----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCATGGTACCCCCTAACTCTTCCTCCTAATCATTT-GACTTAAAATGCTTAATTAAAA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103260210 574 - 162156779 TCAAGGCAAATGATATCTGACatgcctccctccccttctctcaaGTACATCAAGCCAGAGCTCTAG----TTTAAGAtgacataat---tataataaaagtgaATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TACTTACCAATGCTTGCCTTAA-----ccaatttagaagg--aaaaaaaaaaatcaaagctagGACTGTCAGATGGGGAA-AGATCTACTAGTCTCCTT-TGTGTACAACAGGGATAAACG--TAACACTAT--CTCATAAGGCTTTTTGTGAATTAATGCACACAAAA-TACTTAGCGTAGGGCCTGGCATGTAATTATGTGCTGAACCAATGAATACTGTCTATCAGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAGGATCTCCTGGCTCATTAAGTGA----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCTGGTACCCCCTAACTCTTCCTCGTAATCATTT-GACTTAAAATGCTTAATTAAAA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTACAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21182705 575 -  24206276 TCAAGGCAAATGATATCTGACATGCCTCCCTCCCCTTTTCTCAAGTACATCAAGCCAGAGCTCTAG----TTTAAGATGACATAAT---TATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATGCTTGCCTTAA-----CCAATTTAGAAGGA-AAAAAAAAAAACCAAAGCTAGGACTGTCAGATGGGGAA-AGATCTACTACtctcctt-tgtgtacaacagggataaaag--taacactat--ctcaaaaggctttttatgaattaatgcacacaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaacaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAGGATCTCCTGGCTCATTAAGTGA----------ATCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCTGGTATCCCCTAACTCTTCCTCCTAATCATTT-GACTTAAAATGCTTAATTAAAA-GACAAGAGATATGATTCCAATAG----ACCTAAGGGCTGAATC---CACTAcag
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22329558 578 + 158406734 TCAAGGCAAATGATATCTGACATGCCTCTCTCCCCTTCTCTCACGTACATCAAGCCAGAGCTCTAG----TTTAAGATGACTTTATAATTAGAATAAAAGTGAATGAGGTATTCAACGTATACTCCAAACTGTATGATCTT---A----TAACTACAAATGTTTGCTTTAA-----CAAACTCAGAAGG--AAAAAAAAAAATCAAAACCAGGACTGTCAGATGGGGAACCGATCTACTACTCTTATT-TGtgtacaataggaataaaag--taatactat--ctcataaggctttttgtgaattaatgcacataaagttacttagcataggtcctggcatataattatatgctgaaccaatgAATA----CTATCAGAAGTATCATTATTG-----TTATAGCA---GGTCAGAAGCCACCACAGGGATCCCCGA-GGAAGGATCTATTGGCTCACTAAGTGA----------ACCGAAGACCTATGGCAACTATTTCTCTGAAGATTCCAGA-ACTTCTATTCCTGGTACCCCATAACT-----TCCTAATCATTTGGACTTAAAATGCTTAATTAAAA-GACAAC--ATACGATCCAAATAGACCTACCTAAGGGCTGAATC---CACTAcag
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81438548 563 + 145441459 ACTGGACAAATGTTACCTGGCATGCCTTCCT--CCTTCTCTTACATAC-CAAAATTAGAGATCTTG----TTTAAGGTGACTGTGTAATTGGAATAAAAATAAGCAAAGCATTCAATTTACACCTCAAGTAGTTTAACTTCCCAG----TAAGTAGCAATGTTTGCCGTGAATGACCACACTTGGGGGTG-GGGTTAGTAAA------CCAGCACTGTTAGATGA-GAACAGTCCTACCACTTTTCTTATATGTCCACTACACATAAAAGTATAATACTAT--GACATGTAGGGGGGTCtgaattaatacacatgtag-ttcttaccacagtgcgtggcacctaattatgtgctgagcaaattaatg----ctatcaGTACTACTATTATTACACCGTGAG---------TCAGA-GCAATTACAAGAATCTTTGATGAAAGGATTTATGTGCTCATTAAATGAGAAAAAATATATTTAAAAGCTAATGCAACTATTTT----ATGATCCCAGGCCCTTCTCTT----------------------TCCTAATCATTT-GACTTTACAAGCTTAATTAAAA-TACTTAAGATATCATACAACT------ATCTAAAACCTTAATC---TATCATAG
i mm10.chr7                 C 0 I 5
s canFam3.chr3               54483139 571 +  91889043 TCAAGGCAAATGCTGTCTGGAATGCCTCCCTCCC----TCTCAGGTACACCAATCCAGTTATCTGGAAGACTCTGGGTAAT--------TAGAACTTAAGGAAATGGAGCATTCGATTAACACCCCAAACTGCTTAATCAC---ATCACTAAGTACCAATGGTT------------TGGAAGGGGGGGGG-GGTCAAAACAAGCAACTTCGGG-------GGAGGGGAGTAGATCTACCACCttccttatgtacaaaacagggataaaagt-taatactatgcctcagatggctctttgtg----aatacacataaca-tgcttggcacagtacctggcacatgatgacatgctaaacagacaaatgtggactaGCAGTAGTATCATTACTA-----GTACACCAATGGGTCAGAGGCCACCACAAGAGTCCCTGA-AAACAAGACTATTTGCTCATTAAAGGA--GAAAATGTACTGAGGACACAAGCCAATTATTTCTTTGAAGACCCCAGACCCTTCCATGCCTAATTT--------------TCCTAATCATTT-CATTTAGAAAGCTTAATTAAAAGGACTAAAGATTGGATATAAATTGAACTGCCTAAAATGTGTACCTAACACCACA-
i canFam3.chr3              I 130 C 0

a score=23508.000000
s hg38.chr15_KI270850v1_alt    420933 6 +    430880 gttcag
s panTro4.chr15              80203024 6 +  99548318 gttcag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10217862 6 +  10928107 gttcag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17292458 6 - 121039945 gttcag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106769318 6 - 170124641 gttcag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108493186 6 - 171882078 gttcag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103260784 6 - 162156779 GTTCAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21183280 6 -  24206276 gttcag
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22330136 6 + 158406734 gttcgg
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54483710 6 +  91889043 ATTCAG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81439111 5 + 145441459 I

a score=367022.000000
s hg38.chr15_KI270850v1_alt    420939 172 +    430880 tatctctcatcagaaatgctgagatgaccaagaagtgtttcagatttgg----------a-tttttttttttttggaagctggaacatttgcatatacataatgacctatcttagggatagggcccaagtctaaacacagaattcatttatttttttctc----------------------------------tttttttttttttttttgagacg
s panTro4.chr15              80203030 174 +  99548318 tatccctcatcagaaatgctgagatgacaaagaagtgtttcagatttgg----------a---tttttttttttggaagctggaacatttgcatatacataatgacctatcttagggatagggcccaagtctaaacacagaattcatttatttttttctc------------------------tttt------tttttttttttttttttgagacg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10217868 172 +  10928107 tatccctcatcagaaatgctgagatgaccaagaagtgtttcagatttgg-----------------ttttttttggaagctggaacatttgcatatacataatgacctatcttagggatagggcccaagtctaaacatagaattcatttatttttctctttt----------------------tttt------tttttttttttttttttgagacg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17292464 169 - 121039945 tatccctcatcagaaatgctgagatgaccaagaagtgtttcagatttgg----------a-tttttttttttttggaagctggaacatttgcatatacataatgagctatcttagggatagggcccaagtctaaacacagaattcatttatttttct-------------------------------------ttttctcttttttttttgagacg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106769324 159 - 170124641 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcagattttg----------attttttttttttttggattctggaatatctgcatat------tgagctatcttggggatagggcccaaatctaaacacagaattcattttttttc---------------------------------------t--ttttttttttttttgagatg
i rheMac3.chr7              C 0 I 12
s macFas5.chr7              108493192 156 - 171882078 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcagattttt----------tttttttttttttttggattctggaatatctgcatat------tgagctatcttggggatagggcccaaatctaaacacagaattcattttttttc--------------------------------------------ttttttttttttgagatg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103260790 166 - 162156779 TATCCCTCATCTGAAAT-CTGAGATGACcaagaagtgtttcagattttgattttttttttttttttttttttttggattctgGAATATCTGCATAT------TGAGCTATCTTGGGGATAGGGCCCAAATCTAAACacagaattcatttattttt--------------------------------------------ctttttttttttgagatg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21183286 164 -  24206276 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcagattttgatt-------tttttttttttttttggattctggaatatctgcatat------tgagctatcttggggatagggcccaaatctaaacacagaattcatttattttt---------------------------------------ttatttttattttttttgagatg
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22330142 197 + 158406734 tattcctcatctgaaatgcttgggt--ccaagaagtgtttcagattttg----------a--------ttttttggattctggaaaatttgcatatacgtaacaagctatcttggggatagtgcccaagtctaaataaagaattcatttttcatatacactttatacatatagcctgaaggtaattttatacagttgttttgtttttttctgagatg
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81439111   5 + 145441459 I
e canFam3.chr3               54483716   0 +  91889043 C

a score=23468.000000
s hg38.chr15_KI270850v1_alt    421111 16 +    430880 gagtctcgttctgtcg
s panTro4.chr15              80203204 16 +  99548318 gagtctcgttctgtcg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10218040 16 +  10928107 gagtctcgttctgtca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17292633 16 - 121039945 gagtctcgttctgtcg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108493348 16 - 171882078 gaatctcgctctgtca
i macFas5.chr7              C 0 I 2
s papAnu2.chr7              103260956 16 - 162156779 gagtctcgctctgtca
i papAnu2.chr7              C 0 I 2
s chlSab2.chr29              21183450 16 -  24206276 gagtctcgctctgtca
i chlSab2.chr29             C 0 I 2
s calJac3.chr6               22330339  5 + 158406734 gaacg-----------
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81439111  5 + 145441459 I
e canFam3.chr3               54483716  0 +  91889043 C
e rheMac3.chr7              106769483 12 - 170124641 I

a score=2146475.000000
s hg38.chr15_KI270850v1_alt    421127 810 +    430880 cccaggctggagtgcaatggtgtgatctcggctcactgcaagctccgcctcccgggttcacaggattctctcgcctcagcctctggagtagctgggactacatacgcccgccaccacgcccggctca-tttttttgtattt-------ttagtagagatggggtttcaccacattagtcaggatggtcttgatctcctgacctcatg--atccgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagccaaattcatttattttttatatatacttcatacacatagcctgaagttaattttatacaatatttttagtaattctgtacatgaaattaaattttgactgtgttttaactgtcacccatcatgaattcaggtgtctaatttctacttgtg---acatactggtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTCGACATGTGTAC-TGTGTATATTcaca-------cacacacacacacattttttaagagatggggtcttgttctgtcccc------taggttggagcacagtgctgcaatcacagctcactgcagccttgatctcctgggctcaagcaatcttcctgcctcagcgtcccaagtagctggactacagacaggcgcca------ccatgcccagctaa-tttttttttttaac-ttttttttttcccctcagagaaaaggtctcgctatgttgtccaggctggtcttgaattcccgggctcaagcgctgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccAAT
s panTro4.chr15              80203220 818 +  99548318 cccaggctggagtgcaatggtgtgatctcggctcactgcaagctccgcctcccgggttcacaggattctctcgcctcagcctctggagtagctaggactacatgcgcccgccaccacgcccggctaa-tttttttgtattt-------ttagtagagatggggtttcaccacgttagtcaggatggtcttgatctcctgacctcatg--atccgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccaaattcatttattttttatatatacttcatacacatagcctgaagttaattttatacaatatttttagtaattctgtacatgaaattaaattttgactgtgttttaactgtcacccatcatgaattcaggtgtctaatttctacttgtg---acatactggtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTCGACATGTGTAC-TGTGTATATTCACACACGCACCACACACACACACAttttttaagagatggggtcttgttctgtcccc------taggttggagcacagtgctgcaatcacagctcactgcagccttgatctcctgggctcaagcaatcttcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctaa-tttttttttttaactttttttttttcccctcagagaaaaggtctcgctatgttgcccaggctgatcttgaattcccgggctcaagcgctgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10218056 813 +  10928107 cccaggctggagcgcaatggtgcgatctcggctcactgcaagctccgcctcctgggttcacaggattctcccgcctcagcctccagagtagctgggactacacgcgcccgccaccacgcacagctaa-tttttttgtattt-------ttagtagagatgcggtttcaccatgttagccaggatggtcttgatctcctgacctcatg--atccgcccacctttgcctcccaaagtgctgggattacaggcgtgagccactgcgcctggccaaattcatttattttttatatatacttcatacatatagcctgaagttaattttatacaatatttttagtaattctgtacatgaaattaaattttgactgtgttttaactgttacccatcatgaattcaggtgtctaatttctacttgtg---acatatcagtgttccagaaatttcagattttggagcatttcagattAGGGCTGCTCGACATGTGTAC-TGTGTATATTCACACATACAC--CACACACACACAttttttaagagatggggtcttgttctgtcccc------taggttgtagcacagtgctgcaatcacagctcactgcagccttgatctcctgggctcaagcaatcttcctgcctcagcctcccaagtagctggactacagacatgcacca------ccatgcccagctaa----ttttttttaacttttttcttcccccctcagagaaaaggtctcgctatgttccccaggctggtcttgaattcccgggctcaagcactgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17292649 815 - 121039945 cccaggctggaatgcagtggtgcgatctcggctcactgcaagctccgcctacccggttcacaggattctcccgcctcagcctcccgagtagctgggactacaggtgcccaccaccatgcccggctaattttttttatattt-------ttagtagagatggggtttcatcatgttagccaggatggtcctgatctcctgacctcatg--atccgccgacctcgacctcccaaagtgctgggattacaggcgtgagccactgcgcccggccaaattcatttatttttggtatatacttcatacatacagcctgaagttaattttatacaatatttttagtaattctgtacaggaaattaaattttgactgtgttttaactgtcacccatcatgaattcaggtgtctaatttctacttgtg---acatatcagtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTCGACATGTGTAC-TGTGTATATTcacacacacaccacacacacaca----TTTTAAgagatggggtcttgttctgtcccc-------aggttgaagcacagtgctgcaatcacagctcactgcagccttgatctcctgggctcaagcaatcttcctgcctcagcctcccaagtagctggactatagacatgcgcca------ccatgcccagctaattttttttttttaactttttttttttcccctcagagaaaaggtctcgctatgttgcccaggctggtcttgaattcccaggctcaagcgctgctcctgcttcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106769495 785 - 170124641 cccaggctggagtgcagtggcacgatcttggctcaatgcaagctccacctcccgggttcacaccattctcccacc-cagcctcctgagtagctgggactacaggcgcccgccatcgtgcctggctaa-tttttttgtgttt-------ttagtagaaacggggtttcaccatgttagcc-ggatggtcttgatgtcctga--------------cccacttcagcctcccaaagtgctgggattacaggcgtgagctaccatgcctggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaatatttttagtaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---acgtgtcggtgttccaaaagtttcagattttggaggatttcagattAGGGCTGCTCGACATGTGTAT-TGTGTATATTTACACACACACCACACACACACACAttttttaagatgtggcgtcttggtctgtcccc------caggttggagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctat----------------tttttttccacccctcagaaaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaggtgttgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccAAT
i rheMac3.chr7              I 12 C 0
s macFas5.chr7              108493366 785 - 171882078 cccaggctggagtgcagtggcacaatcttggctcaatgcaagctctacctcccgggttcacaccattctcccacc-cagcctcctgagtagctgggactacaggcgcccgccatcatgcctggctaa-tttttttgtgttt-------ttagtagaaacggggtttcaccatgttagcc-ggatggtcttgatgtcctga--------------cccacttcagcctcccaaagtgctgggattacaggcgtgagctaccatgcctggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaatatttttagtaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---acgtgtcgttgttccaaaagtttcagattttggaggatttcagattAGGGCTGCTCGACATGTGTAT-TGTGTATATTTacacacacaccacacacacacacattttttaagatgtggcgtcttggtctgtcccc------caggttggagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctat----------------tttttttccacccctcagaaaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaagtgttgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccAAT
i macFas5.chr7              I 2 C 0
s papAnu2.chr7              103260974 785 - 162156779 cccaggctggagtgcagtggcacgatcttggctcaatgcaagctccacctcccgggttcacaccattctcccacc-cagcctcctgagtagctgggactacaggcgcctgccatcatgcctggctaa-tttttttgtgttt-------ttagtagaaacggggtttcaccatgttagcc-agatggtcttgatgtcctga--------------cccacttcagcctcccaaagtgctgggattacaggcttgagctaccatgcctggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaatatttttagtaATTCTGTACATGAAATTAAATT----CTGTGTTTTAACTGTCACCCATCACGAATTCAGGTGTGTTATTTCTACTTGTG---ACGTGTCGGTGTTccaaaagtttcagattttggagcatttcagattagGGCTGCTCGACATGtgtat-tgtgtatatttacacacacaccacacacacacacattttttaagaTGTGGCGTCTTggtctgtcccc------caggttggagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctat----------------tttttttccacCCCTCAGAAaaaaggtctcgctatgtttcccaggctggtcttgaattcccaggctcaagtgttgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccaat
i papAnu2.chr7              I 2 C 0
s chlSab2.chr29              21183468 785 -  24206276 cccaggctggagtgcagtggcacgatcttggctcaatgcaagctccacctcccgggttcacaccattctcccacc-cagcctcctgagtagctgggactacaggtgtccgccatcatgcctggctaa-ttttttggtgttt-------ttagtagaaacggggtttcaccatgttagcc-ggatggtcttgatgtcctga--------------cccatttcagcctcccaaagtgctgggattacaggcgtgagctaccatgcccggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaatatttttagtaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---acgtgtcggtgttccaaaaatttcagattttggagcatttcagattAGGGCTGCTCGACATGTGTAT-TGTGTATATTTacacacacaccacacacacacacaTTTTTAAATATGTGGCgtcttggtctgtcccc------caggttggagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgccccagcctcccaagtagctggactacagacatacgcca------ccatgcccagctat----------------tttttttccacccctcagagaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaagcattgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccAAT
i chlSab2.chr29             I 2 C 0
s calJac3.chr6               22330344 777 + 158406734 cccaggctggagtgcagtggcgcaatcttggctcactgcaacctccacctccctagttcaagtgattcccctgcctcagcctcctgagtagctgggattaccagcttgcaccaccatgcccagctaa-tttttttttttttttttgtatttttagagacagggtttcaccatgttggccaggctggtctctaactcctgacctcaggcaatccgcctgcctcggcctcccaaagtgctgggattacaggaatgagccactgcacctggcc-----------------------------------------------aattttatatagtatttttagtaattctgtacatgaaataaaagt-----------ttaactgtcacccatcaagaattcaggtgtgcaatttctacttgtgacaacatgatgctgctccaaaaatttcagattttggggcatttcagattAGGGCTGCTCGgtgtgtgtgtgtgtacacgtgcgtgcatgtgtggtgtgtgAATACATTCTTTAAgagatagggtcttgctcgacccccccccccccccccgcagcacagtg-gacaatcatagctcactgcagccttgaactcctgggctcaagcaatccttctgcctcagcctcccaagtagatg----acagacatgtgccaccatccccatgcccagctaa---ttttttttaaactgtatttttcccccctcagagaataggtcttgcaatgttgcccaggctggtcttgaattgctgggctcaatcattactcct-cctcagcctctcaaagtgctgggattacaggcataagccaccatgcctagccAAT
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81439111   5 + 145441459 I
e canFam3.chr3               54483716   0 +  91889043 C

a score=8595.000000
s hg38.chr15_KI270850v1_alt    421937 2 +    430880 AC
s panTro4.chr15              80204038 2 +  99548318 AC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10218869 2 +  10928107 AC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17293464 2 - 121039945 AC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106770280 2 - 170124641 AC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108494151 2 - 171882078 AC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103261759 2 - 162156779 AC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21184253 2 -  24206276 AC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22331121 2 + 158406734 AC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81439116 2 + 145441459 AC
i mm10.chr7                 I 5 C 0
e canFam3.chr3               54483716 0 +  91889043 C

a score=127307.000000
s hg38.chr15_KI270850v1_alt    421939 35 +    430880 TGATCCTTTTAAACCGTCCA-GTTATATGAATTCAT
s panTro4.chr15              80204040 35 +  99548318 TGATCCTTTTAAACCGTCCA-GTTATATGAATTCat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10218871 35 +  10928107 TGACCCTTTTAAACTgtcca-gttaaatgaattcac
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17293466 35 - 121039945 TGATCCTTTTAAACTGTCCA-GTTAAATTAATTCAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106770282 35 - 170124641 TGATCCTTTTAAATTatcca-gttaaatgaattcat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108494153 35 - 171882078 TGATCCTTTTAAATTATCCA-GTTAAATGAATTCAT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103261761 35 - 162156779 TGATCCTTTTAAATTATCCA-GTTAAATGAATTCAT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21184255 35 -  24206276 TGATCCTTTTAAATTATCTA-GTTAAATGAAGTCAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22331123 36 + 158406734 TGATCCTTTTAAACTGTCTAGGTTAAATGAATTCAT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81439118 35 + 145441459 TGATTTTTTTAAACACACCA-ATTAAAAGAATTCAT
i mm10.chr7                 C 0 I 220
s canFam3.chr3               54483716 33 +  91889043 TGATCC-TTCAAATTCTCCA-GCTAAATGAATTCA-
i canFam3.chr3              C 0 C 0

a score=201088.000000
s hg38.chr15_KI270850v1_alt    421974 61 +    430880 AGTTCCTCATTTTCAAAACAGAAACCTACTATCCACCCCATACTCACAGACCCATTTACTT
s panTro4.chr15              80204075 61 +  99548318 agttcctcattttcaaaacagaaacctactatccaccccatactcacagacccatttactt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10218906 61 +  10928107 agttccttattttcaaaacagaaacctaccatccaccccatactcacagacccatttactt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17293501 61 - 121039945 AGTTCCTCATTTTCAAAACAGAAACCTACTATCCACCCCATACTCACAGACCCATTTACTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106770317 60 - 170124641 agttcctca-tttcaaaacagaaacctactatccaccccatactcacagacccatttactt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108494188 60 - 171882078 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCACCCCATACTCACAGACCCATTTACTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103261796 60 - 162156779 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCACCCCATACTCACAGACCCATTTACTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21184290 60 -  24206276 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCACCCCATACTCACAGACCCATTTACTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22331159 61 + 158406734 AGTTGCTCATTTTCAAAACAGACACCAACTATCCACCCCATActcacagacccatttaatt
i calJac3.chr6              C 0 I 34
s canFam3.chr3               54483749 46 +  91889043 -GTTTCTCATTTTCAAAACACAAACCTTTGGTCCAC-------------ATCCA-TTACTC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81439153 220 + 145441459 I

a score=16608.000000
s hg38.chr15_KI270850v1_alt    422035 7 +    430880 TGTGTAG
s panTro4.chr15              80204136 7 +  99548318 tgtgtag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10218967 7 +  10928107 tgtgtag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17293562 7 - 121039945 TGTGTAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106770377 7 - 170124641 tgtgtgg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108494248 7 - 171882078 TGTGTGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103261856 7 - 162156779 TGTGTGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21184350 7 -  24206276 TGTGTTG
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54483795 7 +  91889043 TATATAT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81439153 220 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I

a score=628566.000000
s hg38.chr15_KI270850v1_alt    422042 229 +    430880 TCCATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACCAATG---------------------TTTTACCATGATAAAAAATGTTTTTCTCTTGGTTATTCTACTATTGCCTGACAGTTCCTGCCCTTA-TTTTCAGCATATTTTGCCAT-AAAGTGAGGTCACTTGTAG--CTTTTTTTTGACCTTTAGT---------TGGTCTTCTACTGTCAACGGGAAAGAAGGCTTTAAGATAAATCAGAGACTTAATAGAGT
s panTro4.chr15              80204143 229 +  99548318 tccatctgaactttcatcaatgtatagatctgcattcagaccaatg---------------------ttttaccatgataaaaaatatttttctcttggttattctactattgcctgacagttcctgccctta-tttttagcatattttgccat-aaagtgaggtcatttgtag--cttttttttgacctttagt---------tggtcttctactgtcaacgggaaAGAAGGCTTTAAGATAAATCAGAGACTTAATAGAGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10218974 231 +  10928107 tccatctgaactttcatcaatgtatagatctgcattcagaccaatg---------------------ttttaccacgagaaaaaatgtttctctcttggttattccactattgcctgacagttcctgccctta-tttttaccatattttaccat-aaagtgaggtcatttgaagtttttttttttgacctttagt---------tggtcttctactgtcaacgggaaagaaggctttaagataaatcagagacttaatagagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17293569 228 - 121039945 TCTATCTGAACTTTCATCAATGtatagatctgcattcagaccaatg---------------------ttttaccatgagaaaaaatgtttttctcttggttattctactattgcttgacagttcctgccctta-tttttagcacattttgccat-aaagtgaggtcatttgtag---ctttttttgacctttagt---------tggtcttctactgtcaacaggaaAGAAGGCTTTAAGATAAATCAGAGACTTAATAGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106770384 238 - 170124641 tctatctgaactttcatcaatgtatagatctgcattcagactagtg---------------------ttttaccatgagaacaaatgtttttctcttggttattccactattgcctgacagttcctgcccttattttttagcatattttgccat-aaagtgaggtcatttgtag---ctttttttgacattcagttggtcttgctggtcttttactgttaacaggaaAGAAGGCTTTTAGATAAATCAGAGACTTCATAGAGG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108494255 238 - 171882078 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACTAGTG---------------------TTTTACCATGAGAACAAATGTTTTTCTCTTGGTTATTCCACTATTGCCTGACAGTTCCTGCCCTTATTTTTTAGCATATTTTGCCAT-AAAGTGAGGTCATTTGTAG---CTTTTTTTGACATTCAGTTGGTCTTGCTGGTCTTTTACTGTTAACAGGAAAGAAGGCTTTTAGATAAATCAGAGACTTCATAGAGG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103261863 237 - 162156779 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACTAGTG---------------------TTTTACcatgagaaaaaatgtttttctcttggtTATTCCACTATTGCCTGACAGTTCCTGCCCtta-tttttagcatattttgCCAT-TAAGTGAGGTCATTTGTAG---CtttttttGACATTCAGTTGGTCTTGTTGGTCTTTTACTGTTAACAGGAAAGAAGGCTTTTAGATAAATCAGAGACTTCATAGAGG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21184357 238 -  24206276 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACTAGTG---------------------TTTTACCATGAGAAAAAATGTTTTTCTCTTGGTTATTCCGCTATTGCCTGACAGTTCCTGCCCTTATTTTTTAGCATATTTTGCCAT-AAAGTGAGGTCATTTGTAG---CTTTTTTTGACATTTAGTTGGTCTTGTTGGTCTTTTACTGTTAACAGGAAAGGCGGCTTTTAGATAAATCAGAGACTTCATAGAGG
i chlSab2.chr29             C 0 C 0
s mm10.chr7                  81439373 222 + 145441459 TCGGTCTTCAACCTTAGCAACATATAGCTCTGAATTCAGACCAATA---------------------TTTTACCATAACAAAA---------CTTTTTCTTAATCTTCTATTGCCTAATAACGTCTATT-----GGTTTGGTGTATTCTGTCAT-AAAATGAGATTATCAACAA-GCTTTTTTTTTGTTTTTACCTCAACTT--AAGTCT--TATTGTGGACAAAATAACACACTTTTATATGAATCAAAAACTTAGTATagt
i mm10.chr7                 I 220 I 736
s canFam3.chr3               54483802 246 +  91889043 TCTACTGCAAC--TGATCAATTTATAGGTCTATGTTCACATCAAtgtttgtttgtttgtttgtttttttTTACCATAAAGAAAAA-GTAACCCCCTTGGTTATACCACTGTTGTCTAATAATTTTCCTGATTA-TTTTTGGCATATTTTGTCTTAAAAATGAGATCATTTGCAAAGGTTTTTTTAAACCTTTATT---------TGGTCTTTCACAATGGACAGGAAAGGAGATTTTAAGA-GGATCAGAGACTTGGAAT---
i canFam3.chr3              C 0 C 0
e calJac3.chr6               22331220  34 + 158406734 I

a score=753654.000000
s hg38.chr15_KI270850v1_alt    422271 307 +    430880 GCAAACCTTAATACTACCGAAAATCAGGAGTCAACAGGAAGAATTACTTGGCAATGCTGTAAAACAAAAACAATTCTTTAATTAAAAA-ATTAATTTAAAAACAA----TTGTTTAATGCTAATGATATAGACACAAATACcctcaagataaaactagttctacctatctacctattgttagaaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAtt---------------ttatttgagac-agagtt---------------------ttgctcttgtcgccca--cgctggagcgcaatggctcaatctccgctctctgtaacctctgcc-tcccgggttca
s panTro4.chr15              80204372 311 +  99548318 GCAAACCTTAATACTACCAAAAATCAGGAGTCAACAGGAAGAATTACTTGGCAATGCTGTAAAACAAAAACAATTCtttaattaaaaa-attaatttaaaaaCAATTCTTTGTTTAATGCTAATGATATAGAGACAAATACcctcaagataaaactagttctacctatctacctattgttagaaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAtt---------------ttatttgagac-agagtt---------------------ttgctcttgtcgccca--cgctggagcgcaatggctcaatctccgctctctgtaacctctgcc-tcccgggttca
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10219205 307 +  10928107 gcaaaccttaatactaccgaaaatcaggagtcaacaggaagaattacttggcaATGCTGTAAAACAAAAACAATTCtttaattaaaaa-attaatttaaaaaCAATTCTTTGTTTAATGCTAATGATATAGAGACAAATACcctcaagataaaactagttctacctatctacctattgttagaaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAtt---------------ttatttgagac---agtt---------------------ttgctc--atcgccca--tgctggagcgcaatggctcaatctccgctctctgcaacctctgcc-tcccgggttca
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17293797 304 - 121039945 GCAAACCTTAATACTACCGAAAATCAGGAGTCAACAGGAAGAATTACTTGGCAATGCTATAAAACAAGAACAATTCTTTAATTAAAAAGATTAATTTAAAAACAATTCTTTGTTTAATGCTAATGATATAGAGACAAATACcctcaagataaaattagttctac----ctacctattgttagaaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAt-------------------tttgagac-agagtt---------------------ttgctcttgccaccca--cactggagcgcgatggctcaatctcagctctctgcaacctccgcc-tcacaggttca
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106770622 317 - 170124641 GCAAACTTTAATACTACCGAAAACCAGGAGTCAACAGGAAGAATTACTTGGCAATGCTGTAAAAGAAAAACAATTGtttaattaaaaa-attaatttaaaaaCAATTCTTTGTTTAatgctgatgacatagagacgaataccctcaagataaaactagttctacctatctacctattgttagaaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAttt----------tatgttatttgagatgggagtt---------------------ttgctcttgtcgccca--ggctggagcacaatggttcaatctcagctctctgcaacctccacc-tccggggttca
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108494493 316 - 171882078 GCAAACTTTAATACTACCGAAAACCAGGAGTCAACAGGAAGAATTACTTGGCAATGCTGTAAAAGAAAAACAATTGTTTAATTAAAAA-ATTAATTTAAAAACAATTCTTTGTTTAATGCTGATGACACAGAGACGAATACCCTCAAGATAAAACTAGTTCTACCTATCTACCTATTGTTAGAAAGAATGGCTTTTGAGGAAAC-TCACCTAATACAAGttattt----------tatgttatttgagat-ggagtt---------------------ttgctcttgtcgccca--ggctggagcacaatggttcaatctcagctctctgcaacctccgcc-tccggggttca
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103262100 316 - 162156779 GCAAACTTTAATTCTACCGAAAACCAGGAGTCAACAGGAAGAATTACTTGGCAAtgctgtaaaagaaaaacaattgtttaattaaaaa-attaatttaaaaacaattctttgtTTAATGCTGATGACATAGAGACGAATACCCTCAAGATAAAACTAGTTCTACCTATCTACCTATTGTTAGAAAGAATGGCTTTTGAGGAAAC-TCACCTAATACaagttattt----------tatgttatttgagat-ggagtt---------------------ttgctcttgtcgccca--tgctggagcacaatggttcaatctcagctctctgcaacctctgcc-tccctggttca
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21184595 316 -  24206276 GCAAACTTTAATACTACTGAAAACCAGGAGTCAACAGGAAGAATTACTTGGCAATGCTGTAAAAGAAAAACAATTGTTTAATTAAAAA-ATTAATTTAAAAACAATTCTTTGTTTAATGCTGATGATATAGGGACgaataccctcaagataaaactagttctacctatctacctattgttagaaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAttt----------tatgttatttgagat-ggagtt---------------------ttgctcttgtcgccca--cgctggagcacaatggttcaatctcagctatctgcaacctccacc-tcccgggttca
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54484048 298 +  91889043 GCAAATCTTAATACTATTGAGAACCATGGATCAAAAGAGCAAATTACTTCGCAATGCTAGAAAAGAGAAACAGT------------AA----------------------TGCTTACTGTCACTGGC-----TAAAAATGGTGTCAAGATAAAACCAGTTTG---TACCTCCTCATTGTCAGAAAGAATGGTTCATGAGGAATCTTCGCTAAATACATGCTAtttttttaatttattttttattggtgtt-aaatttaccaacatacagaataacccccagtgcccgtcacccattcact------------cccaccccccgccctcctccccttccaccacccctagttcg
i canFam3.chr3              C 0 I 235
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220  34 + 158406734 I

a score=476452.000000
s hg38.chr15_KI270850v1_alt    422578 198 +    430880 agtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccaccacgcctggctaatttttgtacttttggtagagacaggg--tttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcccaaagcgctgggattataggcatgagccacagtgcctgg
s panTro4.chr15              80204683 198 +  99548318 agtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccaccacgcctggctaatttttgtacttttggtagagacaggg--tttcaccatgttggccaggctggtctcaaactcctgacctgaggtgatctgcctgcctcagcctccccaagcgctgggattataggcatgagccacagcccctgg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10219512 198 +  10928107 agtgattctcctgcctcagcctcccgagtagctgggattataggcatgtgccaccatgcctggctaatttttgtacttttggtacagacaggg--tttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcccaaagcactgggattataggcatgagccacagtgcctgg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17294101 198 - 121039945 agtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgtcaccacgcctggctaatttttgtatttttggtagagacaagg--tttcaccatgttggccaggctggtctcaaactcctgaccttaggtgatctgcctgcctcagcctcccacagcgctgggattacaggcatgagccacagcgcctgg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106770939 200 - 170124641 agtgattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccatcacgcctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagcactgggattacaggcatgagccacagcacctgg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108494809 200 - 171882078 agtgattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccatcacacctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagcactgggattacaggcatgagccacagcacctgg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103262416 200 - 162156779 agtgattctcccgcctcagcctccagagtagctgggattacaggcgtgtgccatcacgcctagctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggcaatctgcccacctcggcctcccaaagcactgggattacaggcatgagccacagcacctgg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21184911 200 -  24206276 agtgattctcccgcctcagcctcctgagtagctgggattacaggcgtgtgccatcacacctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcgggctcccaaagcactgggattacagggatgagccacagcacctgg
i chlSab2.chr29             C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220  34 + 158406734 I
e canFam3.chr3               54484346 235 +  91889043 I

a score=135181.000000
s hg38.chr15_KI270850v1_alt    422776 54 +    430880 ccCTAATCCAAGTTATTTTAGATCAGGCCTCAATTTTCTCCTCTCCAATAGATA
s panTro4.chr15              80204881 54 +  99548318 ccCTAATCCAAGTTATTTTAGATCAGGCCTCAATTTTCTCCTCTCCCCCCCCCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10219710 54 +  10928107 ccCTAATCCAATTTATTTTAGATCAGGCCTCAATTTTCTCCTCTCCAATAGATA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17294299 51 - 121039945 ccCTAATCCAAGTTATTTTAGATCAGGCCTCAATTTT---CTCTCCAATAGATA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106771139 54 - 170124641 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTTCTCCTCTCCAACAGGTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108495009 54 - 171882078 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTTCTCCTCTCCAACAGGTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103262616 54 - 162156779 ccctaATACAAGTTATTTTAGATCAGGCCTCAATTTTCTCCTCTCCAAAAGGTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21185111 54 -  24206276 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTTCTCCTCTCCAACAGGTA
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54484581 51 +  91889043 cattaatacatGCTATTTTA---TAGGTCTCTATGTTCTGCTCTTCAACAGGTA
i canFam3.chr3              I 235 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I

a score=235142.000000
s hg38.chr15_KI270850v1_alt    422830 70 +    430880 AGAGCTGACACTCCTATCATG--AAACTGTTTTCCTATAGCCATGATCATCAACTAGGACAACAAAGGTGAG
s panTro4.chr15              80204935 70 +  99548318 CCAGCTGACACTCCTATCAGG--AAACTGTTTTCCTAAAGCCATGATCATCAACTAGGACAACAAAGGTGAG
i panTro4.chr15             C 0 I 795
s ponAbe2.chr15_random       10219764 70 +  10928107 AGAGCTGACACTCCTATCATG--AAACTGTTTTCCTATAGCCATGATCATCAACTAGGACAACAAAGGTGAG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17294350 70 - 121039945 AGAGCTGACACTCCTATCACG--AAACTGTTTTCCTATAGCCATGATCATCAACTAGGACAACAAACGTGAG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106771193 70 - 170124641 AGAGCTGACCCTCCTATCATG--AAACTGTTTTCCTATAGCCATGATCATCAACTAGGACAACAAAGGTAAG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108495063 70 - 171882078 AGAGCTGACCCTCCTATCATG--AAACTGTTTTCCTATAGCCATGATCATCAACTAGGACAACAAAGGTAAG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103262670 70 - 162156779 AGAGCTGACCCTCCTGTCATG--AAACTGTTTTCCTATAGCCATGATCATCAACTAGGACAACAAAGGTAAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21185165 70 -  24206276 AGAGCTGACACTCCTATCATG--AAACTGTTTTCCTATAGCCATGATCATCAACTAGGACAACAAAGGTGAG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22331254 70 + 158406734 agAGCTGATACTCCTATCATG--AAACTGTTTTCCTATAGCCATGATCCTCAACTAGGACAACGAAGGTGAT
i calJac3.chr6              I 34 C 0
s canFam3.chr3               54484632 66 +  91889043 AGAGCTGACATTCCTATCATGACACACAGGTCTCCTACAGCAATAGTTCTCAACTGGGA-GCCAGAG-----
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I

a score=1562807.000000
s hg38.chr15_KI270850v1_alt    422900 533 +    430880 GGAAATGGTCTGAAGAAAA-GCATT-TCCCTCCTCCACAAAGGAAAA---TCCTCCTCCTCCTCCTTAAAAGTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACAGGCTTTGCAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT-----AAAAAAAAAAAAAA-GAGGGTAGCACCTACTTTGCAGACTTCGTAGTAGTCAGAAATACATAAAGTACATGGATATGCTCAATAAATACTT--TTAGTGGCAGATGTCCAATTACACACCAGTTATTAAATTATATCACTgttactcagaggtatggtttcaacttattcatcctagccaagttcatcaagaagctTATTTACTTGTTTTAGCA--TATAACTGGT----TTTTTTTTTTTT------CCATCTATGGTTCAGAAG-TATCACTCATAACTTTTTCTTTAAAAATCTGAACC-ACACTTTGTAGATATGTTTG-----CTA-------AAGATCCCCAAATTTTATATTTATTTGTATAGAAGAAATGAACAATTGTCTAAT
s panTro4.chr15              80205800 534 +  99548318 GGAAATAGTCTGAAGAAAAAGCATT-TCTCTCTCCCACAAAGGAAAA---TCCTCCTCCTCCTCCTTAAAAGTGGGAATCATTGTTTCGAAAAGCAGAAAGAACACAGGCTTTGCAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT-----AAAAAAAAAAAAAAAGAGGGTAGCACCTACTTTGCAGACTTCGTAGTAGTCAGAAATACATAAAGTACATGGATATGCTCAATAAATACTT--TTAGTGGCAGATGTCCAATTACACACCAGTTATTAAATTATATCACTgttactcagaggtatggtttcaacttattcatcctagccaagttcatcaagaagctTATTTACTTGTTTTAGCA--TATAACTGGG----TTTTTTTTTTT-------CCATCTGTGGTTCGGAAG-TATCACTCATAACTTTTTCTTTAAAAATCTGAACC-ACACTTTGTAGATATGTTTG-----CTA-------AAGATCCCCAAATTTTATATTTATTTGTATAGAAGAAATGAACAATTGTCTAAT
i panTro4.chr15             I 795 C 0
s ponAbe2.chr15_random       10219834 540 +  10928107 GGAAATAGTCTGAAGAAAA-GCATT-TCTCTCCTCCACAAAGGAAAA---TCCTCCTCCTCCTCCTTAAAAGTGGGAATCATTGTTTCGAAAAGCAGAAAGAACACAGGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT-----AAAAAAAGAAAAAA-GAGGGTAGCACCTACTTTGCAGACTTCGTAGTAGTCAGAAATACATAAAGTACATGGATATGCTCAATAAATACtt--ttagtggcagatgtccaattacacacaagttattaaattatatcactgttacttagaggtatggtttcaacttattcatcctagccaagttcatcaagaagcttatttacttattttagca--tataactggg----tttttttttttt------ccatctgtggttcgcaag-tatcactcataactttttctttaaaaatctgaacctacactttgtagatatgtttg-----ctaaa-gaataagatccccaaattttatatttatttgtatagaagaaatgaacaattgtctaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17294420 548 - 121039945 GGAAATAGTCTGAAGAAAA-GCATT-TCCCTCCTCCACAAAGGAAAAtcctcctcctcctcctcctTAAAAGTGGGAATCATTGTTTCGAAAAACAGAAAGCACACAGGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT-----TAAAAAAAAAA----GAGGGTAGCACCTACCTTGCAGACTTTGTAGTAGTCAGAAATACATAGAGTACATGGAGATGCTCAATAAATACCTTATTAGTGGCAGACGTCTAATTCCAAACAAGTTATTAAATTATATCACTgttactcagaggtatggtttcaacttattcatcctagccaagttcatcaagaagctTATTTACTTGTTTTAGCA--TATAACTGAG----tttttttttttttttttCCCATCTGTGGTTCGGAAG-TATCACTCACAACCTTTTCTTTAAAAATCTGAACCTACACTTTGTAGATGTGTTTG-----CTAAA-GAATAAGATCCCCAAATTTTATATTTATTTGTATAGAAGAAATGAACAATTATCTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106771263 535 - 170124641 GGAGATAGTCTGAAGAAAA-GCATT-CCCCTCCTCCATAAAGGAAAA---TCCTCCTTCTCCTCCTTAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACAGGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAACCTTGGTTACCTAAAGGttttaaaaaaaaaaaaaaaaaa-GTGGGTAACACCTACTTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATGGATATGCTCAATAAATACCTTATTAGTGTCAGATGTCCAATTCCACAT--GTTATTAAATTATATCCCTGTTACTCAGAAGTATGGTTTCAACTTATTCGTCCTAGCCAAGTTCATCAAGAAGC----TTACTTGTTTTAGCA--TATAACTGGG----TTTTTTTTTT--------TCATCTGTGGTTCAGAAG-TATCACTCATAACCTTTTCTTTAAAAATCTGAACCCTCACTATGTAGACATGTTTG-----TTAAA-GAATAAGATCCCCAAATTTTATACTTATTTGTATAGAAAAAATGTACAAT----TAAT
i rheMac3.chr7              C 0 I 311
s macFas5.chr7              108495133 534 - 171882078 GGAGATAGTCTGAAGAAAA-GCATT-CCCCTCCTCCATAAAGGAAAA---TCCTCCTCCTCCTCCTTAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACAGGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTTTT-TAAAAAAAAAAAAAAAA-GTGGGTAACACCTACTTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATGGATATGCTCAATAAATACCTTATTAGTGTCAGATGTCCAATTCCACAT--GTTATTAAATTATATCCCTGTTACTCAGAAGTATGGTTTCAACTTATTCGTCCTAGCCAAGTTCATCAAGAAGC----TTACTTGTTTTAGCA--TATAACTGGG----TTTTTTTTTT--------TCATCTGTGGTTCAGAAG-TATCACTCATAACCTTTTCTTTAAAAATCTGAACCCTCACTATGTAGACATGTTTG-----TTAAA-GAATAAGATCCCCAAATTTTATACTTATTTGTATAGAAAAAATGTACAAT----TAAT
i macFas5.chr7              C 0 I 309
s papAnu2.chr7              103262740 529 - 162156779 GGAGATAGTCTGAAGAAAA-GCATT-CCCCTCCTCCATAAAGGaaaa---tcctcctcctcctccttaaaACTGGGAACCATTGttttgaaaagcagaaagaacacaGGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTAcctaaaggttt------aaaaaaaaaaaaa-gtgggtaacACCTACTTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATGGATATGCACAATAAATACCTTATTAGTGTCAGATGTCCAATTCCACAT--GTTATTAAATTATATCCCTGTTACTCAGAAGTATGGTTTCAACTTATTCGTCCTAGCCAAGTTCATCAAGAAGC----TTACTTGTTTTAGCA--Tataactggg----tttttttttt--------ccatctgtggtTCAGAAG-TATCACTCAtaaccttttctttaaaaatctgaacCCTCACTATGTAGACATGTTTG-----TTAAA-GAATAAGATCCCcaaattttatacttatttgtatagaaaaaatgtacaat----taat
i papAnu2.chr7              C 0 I 315
s chlSab2.chr29              21185235 528 -  24206276 GCAGATAGTCTGAAGAAAA-GTATT-CCCCTCCTCCATAAAGGAAAA---TCCTCCTCCTCCTCCTTAAAACTGGGAATCATTGTTTCGAAAAGCAGAAAGAACACAGGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTTT-----AAAAAAAAAAAAAA-GTGGGTAACACCTACTTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATGGATATGCTCAATAAATACCTTATTAGTGTCAGATGTCCAATTCCAC----GTTATTAAATTATATCCCTGTTACTCAGAGGTATGGTTTCAACTTATTCATCCTAGCCAAGTTCATCAAGAAG--------CTTGTTTTAGCA--TATAACTGGGTTTTTTTTTTTTTT--------TCATCTGTGGTTCAGAAG-TATCACTCATAACCTTTTCTTTAAAAATCTGAACCCTCACTATGTAGACATGTTTG-----TTAAA-GAATAAGATCCCCAAATTTTATACTTATTTGTATAGAAAAAATGTACAAT----TAAT
i chlSab2.chr29             C 0 I 313
s calJac3.chr6               22331324 515 + 158406734 AGAGATAGTCTGAAGAAAA--------------TCC--------------TTCCCCTCCTCCTCCTCAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACATAGGCTTTGGAATA-AAACACCAGGTCTAGCACTTAGGTAT-CACACTGAGCCTTGGT----TAAAGGTAT-----AAAAAAAAAAGTGG-GGGGGCAGCACCTACTTGGCAGACTTGGTAGTGGTCAGAAATACCTAAAGTACATGGATATGCTCAATAAATAACTTATTAGtgacagatgtccaattacacacaggttattaaattatatcactgttactcagaggcatgttttcaacttattcatcctaaccaagttccacaagaagcttatttactcattttagca--cataactgtg----ttatttttttc-------ccatctgtggttcagaagttatcactcgtaactttttctttaaaaatatgaacccacgctatgtagatatgtttg-----ctagataaataaaaacccccaaatttacacttatttgtatagaagaaatgtacgattatctaat
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54484698 426 +  91889043 GGAGACAATATTACAGAAA-GCAGCATTCCTTTTCCACAAGGGAAAA---AAATCTTCCCC-------AAACT--GAACCACTGTTTCACAAAGCAGAAAGAACACAGCCCTCGAAGCATAAATACTAACTCTACCATATAAGtatccactatgagctttggttgtct-taggtat-----aaaa-----------tggagtaccatctactctgcagactctgtagtaatgagaaatctatgaagtgcctggATAGGCTCA------------------------------------------------------------------------------------------TCCCAGTCAAGTTCACTAAGAAGCTCATTTACTTG-TTTAGCACTTCTACCTGGA----GGTTTTTCT---------GCATTTGTGGCTTGAAGC-TATCACTCATTAAC---TCTTTAAAAATCTGAACCCGTATCATCTAGCTAGGTTTTTCTACTTATA-GACTAAGATCCCCAAATTTTATACTTATTTGTATActagaattgcctaat--------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I

a score=992298.000000
s hg38.chr15_KI270850v1_alt    423433 286 +    430880 TTGGAAACCTTGGCCCTGCCTTTAAATATCATACTCCCCAGACCCAGCATTGTGATAGGATGGCCATTCTGGCAGCTCAAAATCTTTACTTGGGGATACTCACC-TGTCGTAAATGAATGCCAA--CTATCATCTCTGGGTTGATTTTTATTCAGTTTGCCTTTAATGGACAACATAATACCAATGCTGAAGA-CCCTTCAAGACTATTACTATTAATCATGTACAATGG--A----TTAATAGCCAGTTGAGAAATTTATAGAAGACTGTTTGAAGGGCCCAAGGTTTACTCAGT
s panTro4.chr15              80206334 283 +  99548318 TTggaaaccttcgccctgcctttaaatatcatactccccagacccagcattgtgataggatggccattctggcagctcaaaatctttatttggggatactcaccctgtcgtaaatgaatgccaa--ctaccatctctgggtt----tttactcagtttgcctttaatcgacaacataataccaatgctgaaga-cccttcaagactattactattaatcatgtacaatgg--a----ttaatagccagttgagaaatttatagaagactgtttgaagggcccaaggtttactcagt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10220374 286 +  10928107 ttggaaaccttggccctgcctttaaatatcatactccccagacccagcattgtgatacgatggccattctggcagctcaaaatatttatttggggatactcacc-tgtcgtaaatgaatgccag--ctaccatctctgggatgatttttattcagtttgcctttaatcgacaacataataccaatgctgaaga-cccttcaagactattactattaatcatgtacaatgg--a----ttaacagccagttgagaaatttatagaagactgtctgaagggcccaaggtttactcagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17294968 286 - 121039945 TTggaaaccttggccctgcctttaaatatcatactccccagacccagcattgtgataggatggccatactggcagctcaaaatctttatctggggatactcacc-tgtcgtaaatgaatgccaa--ctaccatctctgggttgatttttattcagtctgcctttaatcgacaacataataccaatgctgaaga-cccttcaagactattactattaatcatgtacaatgg--a----ttaatagccagttgagaaatttatagaagactgtttcaagggcccaaggtttactcagt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106772109 286 - 170124641 TTggaaaccttggccctgcctttaaatatcatactccccagacccagcactgtgataggatggccattctggcagctgaaaatcttgatttggggatactcatc-tgtcgtaaatgaatgccag--ctaccatctctgggttgatttttattcagtttgcctttaattgacaacataataccaatgctgaaga-tccttcaagactattactattaatcatgtacaatgg--a----ttaacagctagttgagaaatttatagaagactgtttgaagggcCCAAGGTTTACTGAGT
i rheMac3.chr7              I 311 C 0
s macFas5.chr7              108495976 286 - 171882078 TTGGAAACCTTGGCCCTGCCTTTAAATATCATACTCCCCAGACCCAGCACTGTGATAGGATGGCCATTCTGGCAGCTGAAAATCTTGATTTGGGGATACTCATC-TGTCGTAAATGAATGCCAG--CTACCATCTCTGGGTTGATTTTTATTCAGTTTGCCTTTAATTGACAACATAATACCAATGCTGAAGA-TCCTTCAAGACTATTACTATTAATCATGTACAATGG--A----TTAACAGCTAGTTGAGAAATTTATAGAAGACTGTTTGAAGGGCCCAAGGTTTACTGAGT
i macFas5.chr7              I 309 C 0
s papAnu2.chr7              103263584 286 - 162156779 ttggaaacctTGGCCCTGCCTTTAAATATCATACTCCCCAGACCCAGCATTGTGATAGGATGGCCATTCTGGCAGCTCAAAATCTTGATTTGGGGATACTCATC-TGTCGTAAATGAATGCCAA--CTACCATCTCTGGGTTGATTTTTATTCAGTTTGCCTTTAATTGACAACATAGTACCAATGCTGAAGA-TCCTTCAAGACTATTACTATTAATCATGTACAATGG--A----TTAATAGCTAGTTGAGAAATTTATAGAAGACTGTTTGAAGGGCCCAAGGTTTACTCAGT
i papAnu2.chr7              I 315 C 0
s chlSab2.chr29              21186076 286 -  24206276 TTGGAAACCTTGGCCCTGCCTTTAAATATCATACTCCCCAGACCCAGCACTGTGATAGGATGGCCATTCTGGCAGCTCAAAATCTTGATTTGGGGATACTCATC-TGTCGTAAATGAATGCCAA--CTACCATCTCTGGGTTGATTTTTATTCAGTTTGCCTTTAATTGACAACATAATACCAATGCTGAAGA-TCCTTCAAGACTATTACTATTAATCATGTACAATGG--A----TTAACAGCTAGTTGAGAAATTTATAGAAGACTGTTTGAAGGGCCCAAGGTTTACTCAGT
i chlSab2.chr29             I 313 C 0
s calJac3.chr6               22331839 291 + 158406734 ttggaaaccttggccttgtctttaaatatcatactcccaagacccagcattgtgatgggatggccattctggcagcttaaaatcctgatttggggatactcact-tgtcgtaaatgaatgccaa--ctaccatctctgggttgatttttattcactttgcctttaatcaacaacataatatcaaccctgaagaccccttcaagactattactattaattatgtacaactg--attgcttaaaagccagttgagaaatttacaaaagactgtttgaggggcccaaggtttatgcact
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54485124 287 +  91889043 ttggaaatccaagccttgccttcagataccatacaacccagcatcaatacggtgatagtacagccatgct-ttaggtcaaaatcctggtctggggatatctgat-ggtcataaatgaatgccaagtctaccacctctgggttgataatagttcagtttgccattagtcaaaaacacaacacctatattgcagaccccttcaagactattcctattagccatttactatgttca----tgaaaagtcagttgagagatttatggaatactatctgaaggatatacagtttattc---
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I

a score=577500.000000
s hg38.chr15_KI270850v1_alt    423719 181 +    430880 CCTCCAGAGAGAGTTCTAAAACTGGGGTCCCATGGATTGGAATGTAGTAATCCTCCTGAC-AAAAATGTGTTCACACTAAAAATTTTTCTGAAGTA-----TTTTTCCTCCATTTAATCAGATGGTTT----TTAAAT----GCATTGGTCTTGAACATTTAGACTTT-----TTTAATTAA-----GCCAGAGTAGCAGAAAGT
s panTro4.chr15              80206617 185 +  99548318 cctccagagagagttctaaaACTGGGGTCCCATGGATTGGAATGTAGTAATCCTCCTGAC-AAAAATGTGTTCACACTAAAAATTTTTCTGAAGTA-----TTTTTCCTCCATTTAATCAGATGGTTT----TTAAAT----GCATTGGTCTTGAACATTTAGACTTTGTTT-TTTAATTAA-----GCCAGAGTAGCAGAAAGT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10220660 185 +  10928107 cctccagatagagttctaaaACTGGGGTCCCATGGATTGGAATGTAGTAATCCTCCTGAC-AAAAATGTGTTCACACTAAAAATTTTTCTGAAGTA-----TTTTTTCTCCATTTAATCAGGTGTTTT----TTAAat----gcattggtcttgaacatttagactttgttt-tttaattaa-----gtcagagtaacagaaagt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17295254 186 - 121039945 cctccagagagtgttctaaaACTGGGGTCTCATGGACTGGAATGCAGTAATCCTCCTGAC-AAAAATGTGTTCACACTACAAATTTTTCTCAAGTA-----TTTTTTCTCCATTTAATCAGATGTTTT----TTAAAT----GCATTGGTCTTGAACATTTAGACTTCGTTTCTTTAATTAA-----GCCAGAGTAGCAGAAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106772395 188 - 170124641 CCCCCAGAGAGAGTTCTAAAACTGGGGTCAAATGGATCGGAGTGTAGTAATCTTCTTGACAAAAAATGTGTTTACATGAAAAATTTTTCTGAAACAT---TTTTTTTCTCCATTTAATCAGATGTTTT----TTAAAT----GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGCGTAGCAGAAAGC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108496262 188 - 171882078 CCCCCAGAGAGAGTTCTAAAACTGGGGTCAAATGGATCGGAGTGTAGTAATCCTCTTGACAAAAAATGTGTTTACATGAAAAATTTTTCTGAAACAT---TTTTTTTCTCCATTTAATCAGATGTTTT----TTAAAT----GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGTGTAGCAGAAAGC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103263870 188 - 162156779 CCTCCAGAGAGAGTTCTAAAACTGGGGTCAAATGGATCGGAGTGTAGTAATCCTCTTGACAAAAAATGTGTTTACATGAAAattttttctgaaacat---tttttttctccatttaatcagatgtttt----ttaaat----gcattggTCTTGAACATttagactttgttt-ttaaattaa-----gccAGCGTAGCAGAAAGC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21186362 187 -  24206276 CCTCCAGAGAGAGTTCTAAAACTGGGGTCAAATGGATCAGAGTGTAGTAATCCTCTTGACAAAAAATGTGTTTACACAAAAAATTTTTCTGAAACA----TTTTTTTCTCCATTTAATCAGATGTTTT----TTAAAT----GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGAGTAGCAGAAAGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22332130 185 + 158406734 actccagagagagttctaaaACTGGGGTCCCATGGATTGGAATGTAGTGATCCTCCTGAC-AAAAATGTGTTCACACTTGAAACTTTTCTAAAATA-----TTTTTTCTTCATTTAATCAGATGTTTT----TTAAAC----ACATTGGTCTTGAACATTTAGACTTTGTTT-TTTAATTAA-----GCCAGAGGAGCAGAAAGT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81440331 173 + 145441459 cccgctgagAGAATTTT-AAACCAAAGTC-CATGAATTAGAATTTAGGAAGCCTTCTAAAAAAAACTGTATTTATGCT----TTTTTCCCTGAAGA------------TCCATTTAATTGGTTTCTTTTTAGTTAAAA----TCATTGGTCTTGTACATTCAAACC-------TTAAAAAAAATACTGTCAAAGTAAAAGAA---
i mm10.chr7                 I 736 C 0
s canFam3.chr3               54485411 178 +  91889043 -ttccagatGGGAGTTTTAACCTGAAGTC-CACAGACTAACATCTACTAAGTCTCCAGC--AAAACTGTATTCACCCTTGAAATTTTTTCTGAGAATAAGATTT--------TCTAATTAGATGTTTT----TTACATGAGAGCATTAATATTGAACATTCAG-----GTTT-TTTAATTAA-----GACATACCAACAGAAGGG
i canFam3.chr3              C 0 I 118

a score=246155.000000
s hg38.chr15_KI270850v1_alt    423900 60 +    430880 AATATA--CTTAGATGTC-CCAAATAACTGGTTCTGCTGAGACGTACTCTGGCAATTTGCCtt
s panTro4.chr15              80206802 62 +  99548318 AATATATACTTAGATGTC-CCAAATAACTGGTTCTGCTGAGACGTACTCTGGCAATTTGCCtt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10220845 60 +  10928107 aatata--cttagatgcc-ccaaataactggttctgctgagatgtactctggcaatttgcctt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17295440 60 - 121039945 AATATA--CTTAGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGAAATTTGCCtt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106772583 60 - 170124641 AATATA--CTTAGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108496450 60 - 171882078 AATATA--CTTAGATGCC-CCAAATAACTCGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103264058 60 - 162156779 AATATA--CTTAGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGgcaatttgcctt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21186549 60 -  24206276 AATACA--CTTAGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22332315 60 + 158406734 AATATA--CTTAGATGCT-CCAAAGAACTGGTTCTGCTGAGATGTACTCGGGCAATTTGCCTT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81440504 59 + 145441459 AATCTA--CTTAGATGCCTCCCAAGAAC--ATTATACTGTATTGTACTTTGGCAATTTGCCTT
i mm10.chr7                 C 0 I 1278
s canFam3.chr3               54485707 58 +  91889043 GATATA--CTTAGATGCCCCCAAAGAACTGGTT---CAGAGATGTACTTTGGCAATTTGCTTT
i canFam3.chr3              I 118 C 0

a score=4095.000000
s hg38.chr15_KI270850v1_alt    423960 1 +    430880 t
s panTro4.chr15              80206864 1 +  99548318 t
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10220905 1 +  10928107 t
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17295500 1 - 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106772643 1 - 170124641 t
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108496510 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103264118 1 - 162156779 t
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21186609 1 -  24206276 t
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22332375 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54485765 1 +  91889043 T
i canFam3.chr3              C 0 I 292
e mm10.chr7                  81440563 1278 + 145441459 I

a score=301787.000000
s hg38.chr15_KI270850v1_alt    423961 104 +    430880 attttt------------ctatttttatttttgaaacagagtctcgctctgtc------gcccagg----agtgcagtggtacaatttcggctcaccacaacctccacctcctgggttcaagcaat
s panTro4.chr15              80206865 108 +  99548318 attttt--------ttttctatttttatttttgaaacagagtctcgctctgtc------gcccagg----agtgcagtggtacaatttcggctcaccacaacctccgcctcctgggttcaagcaat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10220906 104 +  10928107 tttttt------------ctatttttatttttgaaacagagtctcgctctgtc------gctcagg----agtgcagtggtacaatttcagctcaccacaacctccgcctcctgggttcaagcaat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17295501 109 - 121039945 tttttt-------tttttctatttttatttttgaaacagagtctcgctctgtt------gcccagg----agtgcaatggtacactttcggctcaccacaacctccgcctcctgggttcaagcaat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106772644 107 - 170124641 cttttt---------ttcctatttttatttttgaaacagagtctcactctgtc------gcccagg----agtgcagcggtacagtttcggctcaccgcaacctccgcctcctgggttcaagcaat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108496511 107 - 171882078 cttttt---------ttcctatttttatttttgaaacagagtctcactctgtc------acccagg----agtgcagcggtacagtttcggctcaccgcaacctccgcctcctgggttcaagcaat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103264119 107 - 162156779 cttttt---------ttcctatttttatttttgaaacagagtctcactctgtc------gcccagg----agtgCAGCGGTACAgtttcggctcaccgcaacctccgcctcctgggttcaagcaat
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21186610 107 -  24206276 cttttc---------ttcctatttttatttttgaaacagagtctcactctgtc------gcccagg----agtgcagcggtacaatttcggctcatcgcaacctccgcctcctgggttcaagcaat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22332376 125 + 158406734 TTttttttttttttttttctatttttatttttgaaacagagtcttgctctgcctctgctgcccaggctgaagtgcagtggtgtaatttcggctcaccac-acctctgcctcccgagttcaagcaat
i calJac3.chr6              C 0 I 109
e mm10.chr7                  81440563 1278 + 145441459 I
e canFam3.chr3               54485766 292 +  91889043 I

a score=844712.000000
s hg38.chr15_KI270850v1_alt    424065 293 +    430880 tctggtgcctatgcctcctgagtagctgggactacaggcatgtgtca-ccacacccagctaa-ttttttatatttttagtagagatggggtttcgcca----tgttggccaggctggtctcaaactcctgacctcaggtgatccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagcca-catgcctggccTGCCTTTAGTTTTATACCAATAATAAAGCTAAACAAAATTTCTATAGCACGGATACTCAGGATTTTAGGCATATTC--TATTACGATTTTGAAGAGccctt
s panTro4.chr15              80206973 293 +  99548318 tctggtgcctatgcctcctgagtagctgggactacaggcatgtgtca-ccacacccagctaa-ttttttatatttttagtagagatggggtttcgcca----tgttggccaggctggtctcaaactcctgacctcaggtgatcca-cccgcctcagcctcccaaagtgctgggattacaggcatgagcca-catgcctggccTGCCTTTAGTTTTATACCAATAATAAAGCTAAACAAAATTTCTATTGCACGGATACTGAGGATTTTAGGCATATTC--TATTACGATTTTGAAGAGccctt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10221010 299 +  10928107 tctggtgcccatgcctcctgagtagctgggactacaggcacgtgcca-ccactcccagctaa-ttttttatatttttagtagagatggggtttcgccatctctgttggccaggctggtctcaaactcctgacctcaggtgatctg-cccgcctcagcttcccaaagtgctgggattacaggcatgagcca-catgcctggcctgcctttagttttataccaataataaagctaaacaaaatttctatagcatggatactcaggattttaggcatattctttattacaattttgaagagccctt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17295610 296 - 121039945 tctcgtgcctatgcctcctgagtagctgggactacaggcacgtgcca-ccacacccagctaatttttttatatttttagtagagatggggtttcgcca----tgttggacaggctggtctcaaactcctgacctcaggtgatccg-cccgcctcggcctcccaaagtgctgggattacaggcatgagcca-caagcctggccTGCCTTTAGTTTTATACCAATAATAAAGCTAAACAAAGTTTCTATAGCATGGATACTCAGGATTTGGGGCATATTCTTTATGACGATTTTGAAGAGccctt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106772751 293 - 170124641 tctcctgcctactcctaacgaatagctgggactacaggcacgtgcca-ccacacctggctaa-ttttttatatttttagtagagatggggtttcgcca----tgttggccaggctggtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagcca-catgcccggccTGCCTTTAGTTTTATACTAATAATAAAGCTAAACAAAATTTCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108496618 293 - 171882078 tctcctgcctactcctaacaaatagctgggactacaggcacgtgcca-ccacacctggctaa-ttttttatatttttagtagagatggggtttcgcca----tgttggccaggctggtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagcca-catgcccggccTGCCTTTAGTTTTATACTAATAATAAAGCTAAACAAAATTTCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103264226 292 - 162156779 tatcgtgCCTACTCCtaccgaatagctgggactacaggcacgtgcca-ccacacctggctaa-ttttttatatttttagtagagatggggtttcacca----tgttggccaggctggtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagtca-catgCCCGGCCTGCCTTTAGTTTTATACTAAtaataaagctaaa-aaaatttCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21186717 293 -  24206276 tctcgtgcctactcctaacgagtagctgggactacaggcacgtgcca-ccacacccagctaa-ttttttatatttttagtagagatggggtttcgcca----tgttggccaggctagtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagcca-catgcccggccTGCCTTTAGTTTTATACTAATAATAAAGCTAAACAAAATTTCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22332610 293 + 158406734 tctcatgcctcagcctctggagtagctgggactacaggcacgtaccacccacaccca-ttaa-ttttttacatttttagtagagatggggttttgtca----tgttggccaggctggtctcaaactcctgacctcaggtgatccgccccacctaggcctcccaaagtgctgggattactggcatgagccaccgcccccagccTGCCTTTAGTTTTACAT---TAATAAAGCTAAATAAAATTTCTATAGCATGGATACTTAGTATTTTGGGCATACTCTTTATTACAATTTTGAAGAG-cctt
i calJac3.chr6              I 109 C 0
e mm10.chr7                  81440563 1278 + 145441459 I
e canFam3.chr3               54485766 292 +  91889043 I

a score=739825.000000
s hg38.chr15_KI270850v1_alt    424358 230 +    430880 atatgaacactcatttagagaaatgtcattcagaccacagatcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagtcttctagccaaatttctctatttgctttagtcaccagctcactcaaagcc-agatttTGGCTCTACTTTAATGACTCTATAGTTTGCTGAGAGATGCTTCTCTGTGTTTAAATTTCTCCTTGG---------------------------TCCTAC--CTC
s panTro4.chr15              80207266 232 +  99548318 atatgaacactcatttagagaaatgtcattcagaccacagatcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagtcttctagccaaatttctctatttactttagtcaccagctcactcaaagcc-agattttggctctactttaatgactctatagTTTGCTGAGAGATGCTTCTCTGTGTTTAAATTTCTCCTTGG---------------------------TCCTACACCTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10221309 230 +  10928107 atatgaacactcatttagagacatgtcattcagaccacagatcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagtcttctagccaaatttctctatttgctttagtcaccagctcactcaaagcc-agattttggctctactttaatgactctatagtttgctgagagatgcttctctgtgtttgaatttctccttgg---------------------------tcctac--ctc
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17295906 226 - 121039945 atatgaacactcctttagagaagtgtcattcagaccacagatcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagtcttctagccaaatttctctatttgctttagtcaccagctcactcaaagcc-agatttTGGCTCTACTTCAATGACTCTATAGTTTCCTGAGAGATGTTTCTCTGTGTT----TTTCTCCTTGG---------------------------TCCTAC--CTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106773044 231 - 170124641 ATATGAACACTCATTTAGAAAAATGTCATTCAGACCACAGATTAGGACATGCTAAAGATTCCCATGAAGA----ATACATTTTCCTTACGGAAGAATATAAGTCTTCTAGCCAAATTTCTCTATTTGCTTTAGTCACCAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTTTGCTGAGAGATGTTTCTCTGTGTTTAACATTCTCCTTGG---------------------------TCCTAC--CTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108496911 231 - 171882078 ATATGAACACTCATTTAGAAAAATGTCATTCAGACCACAGATTAGGACATGCTAAAGATTCCCATGAAGA----ATACATTTTCCTTACGGAAGAATATAAGTCTTCTAGCCAAATTTTTCTATTTGCTTTAGTCACCAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTTTGCTGAGAGATGTTTCTCTGTGTTTAACCTTCTCCTTGG---------------------------TCCTAC--CTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103264518 231 - 162156779 ATATGAACACTCATTTAGAAAAATGTCATTCAGACCACAGATTAGGACATGCTAAAGATTCCCATGAAGA----ATACATTTTCCTTATGGAAGAATATAAGTCTTCTAGCCAAATTTCTCTATTTGCTTTAGTCACCAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTTTGCTGAGAGATGTTTCTCTGTGTTTAACCTTCTCCTTGG---------------------------TCCTAC--CTC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21187010 228 -  24206276 ATATGAATACTCATTTAGAAAAACGTCATTCAGACCACAGATTAGGACATG---AAGATTCCCATGAAGA----ATACATTTTCCTTATGGAAGAATATAAGTCTTCTAGCCAAATTTCTCTATTTGCTTTAGTCACCAGCTCACTCAAAGTCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTTTGCTGAGAGATGTTTCTCTGTGTTTAACCTTCTCCTTGG---------------------------TCCTAC--CTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22332903 225 + 158406734 atatgagcatccctttagagaagtgtcactcagaccacagattaggaaatgctacagcttcccatgaaga----ataagttttccttacagaagagtat-tgtcttctggtcaaatttctcta-----tttagtcaccagctcactcaaagccaagtttttggctttactgtaatgactctatagtttgctgacagatgcttctctgtgtttcactttctccttgg---------------------------tGCGAC--CTC
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54486058 229 +  91889043 aaaaaaaCACCCACTGAGAAAAAGGTCATTCAGATCAAAGATTAGGAAATGCTACAGACTCACCTGAGGAACTGACAGGTTTCTTTTATGGAAGAATTTAAATCATCTGGC-------------------------------CATTCAAAGTC-AGTTTCTGGTTGAACTTTACTGACTCTACAA-TTGCTAAGAAATGCTTCGTTATGTTTAATTTTCTCCTTGACCTTTACCTGTCCAATCTTAACTGAACTTCCAC--CTC
i canFam3.chr3              I 292 C 0
e mm10.chr7                  81440563 1278 + 145441459 I

a score=1623308.000000
s hg38.chr15_KI270850v1_alt    424588 471 +    430880 AAGTCTTCTATGCAACAATGTCAGGAATAAAAATTTATCaggttggtccatatgaaattgtcag-------tattttacct--------------ttttcaaccaacaaaatggcaatttcacatagttcaacctaaTATTATTTCGTAAATGCTGACAACCCACTAGGTTAGATGTTGAGATTACAGATATGTATATATA----------AAACATACTCCTTGCCCTCAGGAGAATTATTCAGGTAGGAAAAAGAAACAAATCTAGTTAGCTAAGTGGAGATCAAGCATAAAATGC----TATAGAAGAGAGGAATAAAG-TAGGGTATCTAAAATGGTTTCACAACTCAGATGTTTTGGCTAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATGAGAAAAAGCATTAACACACAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGGCTGGACAGGAAGGCTCACC
s panTro4.chr15              80207498 471 +  99548318 AAGTCTTCTATGCAACAATGTCAGGAATAAAAATTTAtcaggttggtccatatgaaattgtcag-------tattttacct--------------ttttcaaccaacaaaatggcaatttcacatagttcaacctaaTATTATTTCGTAAATGCTGACAACCCACTAGGTTAGATGTTGAGATTACAGATATGTATATATA----------AAACATACTCCTTGCCCTCAGGAGAATTATTCAGGTAGGAAAAAGAAACAAATCTAGTTAGCTAAGTGGAGATCAAGCATAAAATGC----TATAGAAGAGAGGAATAAAG-TAGGGTATCTAAAATGGTTTCACAACTCAGATGTTTTGCCTAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATGAGAAAAAGCATTAACACACAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGACTGGACAGGAAGGCTCACC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10221539 471 +  10928107 aagtcttctatGCAACAATGTCAAGAATAAAAATTTATCaggttggtccatatgaaactgtcag-------tattttacct--------------ttttcaaccaataaaatggcaatttcacatagttcaacctaaTATTATTTCGTAAATGCTGACAACCCACTAGGTTAGATGTTGAGATTACAGATATATATATATA----------AAACATACTCCTTGCCCTCAGGAGAATTATTTAGGTAGGAAAAAGAAACAAATCTAGTTAGCTAAGTGGAGATCAAGCACAAAATGC----TATAGAAGAGAGGAATAAAT-CAGGGTGTCTAAAATGGTTTCACAACTCAGATGTTTTGGCTAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATGAGAAAAAGCATTAACACACAGAGAACAAGCGCAGAAAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGGCTGGACAGGAAGGCTCACC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17296132 465 - 121039945 AAGTCTTCAATGCAACAATGTCAGGAATAAAAATTTAtcaggttggtccacatgaaattgtcag-------tattttacct--------------ttttcaaccaataaaatggcaatttcacatagttcaacctaaTATTATTTCATAAATGCTGACAACCCACTAGGTTAGATGTTGAGATTACAGATAAATATATAAA----------ACACATACTCCTTGCCCTCAGGAGAATT----AGGTAGGAAAAAGAAACAAATCTAGTTAGCTAAGTGGAGATCCAGCACAAAATGC----TACAGAAGAGAGGAATAAAT-CAGGGTGTCTAAAATGGTTTCACAACTCAGATGTTTTGGCTAGAGAATAATGAAAATGCAGAATTTCAATAAGGAGGCATGAGAAAAAGCATTA--ACACAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGGCTGGACAGGAAGGCTCACC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106773275 473 - 170124641 AAGTCTTCTGTGCAACAATGTCAGGAATAAAAATTTAtcagattggt-catatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcatatagttcaaccaaaTATTATTTCATAAATACTGACAACCCACTAGGTTAGATGTTGAGGTTATAGatatatatatata-------aaaaaaaaaaCTCCTTGCCCTCAGGATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAGATCAAGCACAAAATGC----TACAGAAGAGAGGAATAAAT-CAGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTTTGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATAAGAAAGAGCATTAACACACAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGGCTCACC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108497142 474 - 171882078 AAGTCTTCTGTGCAACAATGTCAGGAATAAAAATTTAtcagattggt-catatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcatatagttcaaccaaaTATTATTTCATAAATACTGACAACCCACTAGGTTAGATGTTGAGGTtatagatatatatatata------taAAAAAAAAACTCCTTGCCCTCAGGATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAGATCAAGCACAAAATGC----TACAGAAGAGAGGAATAAAT-CAGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTTTGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATAAGAAAGAGCATTAACACACAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGGCTCACC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103264749 472 - 162156779 AAGTCTTCTGTGCAACAATGTCAGGAATAAAAATTCATCAGATTGGT-CATATGAAACTGACAG-------TATTTTACCT--------------TTTTCAACCaataaaatggcaatttcatatagttcaacctaatattatttcataaatacTGACAACCCACTAGGTTAGATGTTGAGgttacagatatatatatat--------atataaaaaactcctTGCCCTCAGGATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAGATCAAGCACAAAATGC----TACAGAAGAGAGGAATAAAT-CAGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTTTGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATAAGAAAGAGCATTAACACACAGAGAACAAGCAAAGAGAGGATACAGAACACAGtaaattcaagaaaacaaagtGGTCCAACAGGGCTGGACAGGAAGGCTCACC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21187238 476 -  24206276 AAGTCTTCTGTGCAATAATGTCAGGAATAAAAATTTAtcagattagt-catatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcacatagttcaacctaa---TATTTCATAAATACTGACAACCTACTAGGTTAGATGTTGAGGTTACAGatatatatatatatatatatataAAAAATACTCCTTGCCCTCAGTATAATTATTTAGGTAGGAAAAAGACCCAAATCTAGTTAGGTAAGTAGAGATCAAGCACAAAATGC----T-CAGAAGACAGGAATAAAT-CAGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTTTGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATGAGAAAGAGCATTAACACACAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGGCTCACC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22333128 456 + 158406734 AAGCCTTCTATGCAACAATGTCAGGAATAAAAATTTAtcagattggtccatatgaaattgtcaa-------tattttacct--------------ttttcaaccaataaaatggtaatttcacataattcaacctaaTATTATTTCATAAATGCTGACAACCCACTAGGTTAGATGTTGAGATTACAGATATATATA----------------AAACAATCCTTGCCCTCAAGAGAATT----AGGTAAGAAAAAGAAACAAATCTAGT----CAAGTGGAGA-CAAGCACAAAATAC----TACAGAAGACAAGAATAAAT-AGAGGTATCTAAAATGGTTTCACAATTCAGACATTTTGGCTAGAGAATAATGAAAACGTAAAATTTCAATAAGCAGGCATGAGAAAGAGCATAAACACCCAGAGAATAAGCACAGAGAGGATACAGAACACAGTAAATCCAAGAAAAGGAAGTAGTCCAACAGGGCTGGAAAGGAAAGTTCACC
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81441841 445 + 145441459 AAGTAGTCTCTGaaaaaatataatgaataaaattttatt---ttGGTACATATAAAATTAGTAATACTAACTATTTTAGCTAATAACAACAAGTCATTTTAACCAA-AAAATAGAAATTTCACACAGCTCAA--------TATTTCATGAGTACTGAAAAACTGCT-GGTCAGAAATTGAGATCACAGA-----ATAGATA------------AAACAGCTCATG-TCTCAGAAGAATTCATTTAATGG----AATGAGTAGATTCAGTCAGGCCAGTGGAAA------ACAAAATAC----TCGAGAAAGTAATAATCA-------GTCTCAGAAATGGTTTCACAATTAAAGCTTCTAAGTTAGGGAAAACTGAATATGAAGAATTTCAATATGCAGACATTTTAAAAA-CATA---ATAGGCAGAACAAAGTGGCAGAGGATATAAAACACAGTATATTCAAGGAGA-GAAGTGTTTCAACA-----AGAAATAAAGGCTACCC
i mm10.chr7                 I 1278 I 339
s canFam3.chr3               54486287 428 +  91889043 AAGTTTTCTGTGCAACCCTAT-ACGAACTAAAACTTATTAGATTGATCCATACAGAACTGTCAA-------CATTCTACCT--------------TTTGCAACCAACAAAATAAGAGATTCACACAGTTCAATC------TATTTCATAAATTCAAAAAACCTGTTAGGTTGGATGTTGAGATTACAGATAGAGG----------------AAGCATAATCCTTGCCCTAAGGAGAATTAGTCAAGCAAGAGAAGG----AAATCTAGCTAGGCAAGT-----------ACAAAATGCCACATATACAGGAGAGTAGTAAATAAAAGGTACCTGGAATGGTTTCACAACTCAGACTTCTAAACT---GAAGAATGAAATATCAGAATTTCTCCAAGG----GTGGGAAAGAACA--GACAAGCAGAGAATATGCACAGAATGGATACAGAACACTATAAACTCAAGAAAAGGAAGTGGA-----------AGACAGAGAGGTTCACC
i canFam3.chr3              C 0 C 0

a score=344817.000000
s hg38.chr15_KI270850v1_alt    425059 106 +    430880 AGGAATAAACGAGATAAAGCTACAGGTCCTAACCTCCTTCCTGTGTCGGAAAGA-----TAAATCCATCAACAGATACAAGA---------------tctcc-----tctccctgcatcacctgactttcc
s panTro4.chr15              80207969 106 +  99548318 AGGAATAAACGAGATAAAGCTACAGGTCCTAACCTCCTTCCTGTGTCGGAAAGA-----TAAATCCATCAACAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10222010 106 +  10928107 AGGAATAGACGAGATAAAGCTACAGGTCCTAACCTCCTTCCTGTATCGGAAAGA-----TAAATCCATCAACAGATACAAGA---------------TCTCC-----TCTCCCTGCATCATCTGACTTTCC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17296597 106 - 121039945 AGGAATAAACGAGATAAAGCTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TAAATCCATCAACAAATACAAGA---------------TCTCC-----TCTCCCTGCATCATCTGACTTTCC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106773748 106 - 170124641 AGGAATAAACGAGATAAAGCTACAGGTTCTAACCTCCTTCCTCTATCAGAAAGA-----TGAATCCATCAATAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108497616 106 - 171882078 AGGAATAAACGAGATAAAGCTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TGAATCCATCAATAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103265221 106 - 162156779 AGGAATAAACGAGATAAAGCTACAGGTCCTAACCTCCTTCTTCTATCAGAAAGA-----TGAACCCATCAATAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTgactttcc
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21187714 106 -  24206276 AGGAATAAACGAGATAAAGCTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TGAATCCATCAATAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22333584 111 + 158406734 AGGATTCAATGAGATAAAGGTACAGGTCCTAATCTCCTTCCTCTATCAGAACCA-----TAAATCCATCAACAGATACAAGA---------------TCTCCTCTATTCTTCCTGTATCACCTGACTTTCC
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54486715 112 +  91889043 AGGAATAAAGGATAAATGGCTGCAGGTCCTTACTTA----------CAGAAAGACAAAGTGAATCCATCACCAGGTACAAAACTCAAGATACCACCCCCTTC-----TTCCTCTTCATGATCTGACC----
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81442286 339 + 145441459 I

a score=1622293.000000
s hg38.chr15_KI270850v1_alt    425165 480 +    430880 tctctt----------ctccactggctcccctTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCACC-------ACACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CATTGCCA-----------ATTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATATATGATCTTTATTT---AACTTCCTGTTCATCCTCTCAATCCACAATGTCCTGCCAGCAC--TGATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGCCAAATCCAACTGATACTTCAAGTCTATCTTACCCTGCATCTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAATGTTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACAATTTCCAGGA
s panTro4.chr15              80208075 480 +  99548318 TCTCTT----------CTCCACTGGCTCCCCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCACC-------ACACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCA-----------ATTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATATATGATCTTTATTT---AACTTCCTGTTCATCCTCTCAATCCACAATGTCCTGCCAGCAC--TGATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGCCAAATCCAACTGATACTTCAAGTCTATCTTACTCTGCATCTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAGTGTTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACAATTTCCAGGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10222116 478 +  10928107 TCTCTT----------TTCCACTGGCTCCCCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCACC-------ACACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCTG----------TCTTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATAT---ATCTTTATTT---AACTTCCTGTTCATCCTCTCAATCTACAACATCCTGCCAGCAC--TGATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGCCAAATCCAACTGATACTTCAAGTCTATCTTACTCTGCATCTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTT----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCACCTCTGGTTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACAATTTCCAGGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17296703 477 - 121039945 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAC----ACCACC-------ACATCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCG----------TCTTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATATATGATCTTTATTT---AACTTCCTGTTCATCCTCTCAATCCACAACGTCCTGCCAGCAC--TGATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGACAAATCCAACTGATACTTCAAGTCTATCTTACTCTGCATTTT---TGTAGGCTCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGCTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACCATTT--AGGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106773854 477 - 170124641 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCACC-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCG----------TCTTTCTTCTGCTACACTATCAAGCTTCTCGAA----------------------AATGT--GATCTTTATTT---AACCTCCTGTTCGTCCTCTCAATCTACAATGTCCTGCCAGCAC--TAATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGACTTCACAGCTGCCAAACCCAACTGATACTTCCAGTCTATCTTACCCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATTTCTGGTTATTCTTCAGTTTTCACAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108497722 477 - 171882078 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACTACC-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCG----------TCTTTCTTCTGCTACACTATCAAGCTTCTCGAA----------------------AATGT--GATCTTTATTT---AACCTCCTGTTCGTCCTCTCAATCTACAATGTCCTGCCAGCAC--TAATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGACTTCACAGCTGCCAAACCCAACTGATACTTCCAGTCTATCTTACCCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATTTCTGGTTATTCTTCAGTTTTCACAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103265327 477 - 162156779 tctctt----------ctccactGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGactctttcacttt-aaaaa----accACC-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCG----------TCTTTCTTCTGCTACACTATCAAGCTTCTCGAA----------------------AATGT--GATCTTTATTT---AACCTCCTGTTCGTCCTCTCAATCTACAATGTCCTGCCAGCAC--TAatctctcccctt---ccccaaaa----AGACACTAAACAACTGCTCCCAAATTAATGTCTTCATAGCTGCCAAACCCAACTGATACTTCCAGTCTATCTTACCCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATTTCTGGTTATTCTTCAGTTTTCACAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21187820 477 -  24206276 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCACC-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCCATT--------------CACTGCCG----------TCTTTCTTCTGCTACACTATCAAGCTTCTCAAA----------------------AATGT--GATCTTTATTT---AACCTCCTGTTCGTCCTCTCAATCTACAATGTCCTGCCAGCAC--TAATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGACTTCATAGCTGCCAAACCCAGCTGATACTTCCAGTCTATCTTACCCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATTTCTGGTTATTCTTCAGTTTTCACAAGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22333695 480 + 158406734 TCTCTT----------TTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGATTCTTTCACCTTAAAAAA----ACCACC-------ACATCTTCC-----------TCGATTTAAAATAT-CCTCCCAATT--------------CACTGCCA----------TCTTTCTTTTGCTATACTACCAACCTTCTTGAA----------------------AATATGTGATCTTTACTT---AACCTCCTGTTCATCCTCTCAATCCACAACATCCTGCTACCACTATAATCTCTCCCTTT---CCTCCAAA----AGACACTAAACAATGGCTCCCAAATTAATGACTT--TAGCTGCCAAACCAAACTAATACTTCAAGTCTATCTTACTCTGCATCTT---TCTGATATGTGACGCTTCAATTATTCTCTACTC----AAGTCAGGAATCCTTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTTTCCAGTTTTCATAGGGTACATCTACTG----TCCGACATTC---TTTTTGCTC---TATTAACTCAGTCTGGAAGAGGATATACAACAACTTCCAGGA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81442625 533 + 145441459 tttcttactggcttgcttcccctggct--tgttcagcctgctctcttatagaacccaaga--ctaccagcct-agggatggcaccacccacgaggggacctcccccccttgatcactaattgagaaaatgccttacagctggatctcatggaggcatttccacaactgaagctcctttctctgtgataactccagctgtgtcaaattgacacaaaaccagccagtacaATGACCAACCAGTATTT----ATCTCTGGTTCATTCCTTCAATCTATAACAT--GGTCAACAT------------GCTG---TCCCAAAATACTTGACACTATATA---GCTCCTAAATCAATGATTTCATAGTTGCCAAAGCCAACCAA------------ATCTTTCTTGGCTTTGTGGGTGGGGGTGGGGGAACCTCAATCA--CTCTACTG----AATTCAGGAACCACTTTCTCCTGGTTCGTCCT-----CCTTTGGTTATTTTTATGTATCTATAGGGTATATATATCT----ACCAATCACCCAGTCTTAATTC---TATTG--TCAGTCT-GAGAAAGAGACAGAACAGTATCCAGAA
i mm10.chr7                 I 339 I 243
s canFam3.chr3               54486827 457 +  91889043 TTTCTT----------CTCCAC----------------TGTAAGTATAC-----CCAAGGC----TCATTTT-AAAAA----ACAAAC-------ACACTTTCC-----------TTGACTTAAAACAT-----CCAAGC--------------CACTGCCT----------TCTTTCTCTTGCTCTACTCCTAATCTTCTAGAA----------------------AATATGCTATACTTAGTTCCTAACCTTCTGCTTGTCCTCTCAATCCACAATATCCTGGTAGTAT--GACACCCTCCCCACAAACAACAGAA----CAACACTACAGAATTGCTCCTAAATTGATGACTTCATAACTGCCAAACCAAACCAGTATTGCAGGTTTATTTTACGTGGAATCTT---TGGAG-ATCCGATCCTT-AACTATTCTCCACTCACTTAATTCAGGATTC--CTTCTCATCGATCTACTTTTC----------TAGTTTTCAGTTTCTACAGGGTACATCAAATGTGACTCCTCGCTCT---CTCTTGCTCTCGTCTCAATGCAGTCTGGAAAAGGAGAT---ATAATTTCCAAGA
i canFam3.chr3              C 0 C 0

a score=71250.000000
s hg38.chr15_KI270850v1_alt    425645 22 +    430880 CAGGTTTATGAGAACATTAGAG-
s panTro4.chr15              80208555 22 +  99548318 CAGGTTTATGAGAACATTAGAG-
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10222594 22 +  10928107 CAGGTTTATGAGAACATTAGAA-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17297180 22 - 121039945 CAGGTTTATGAGGACATTAGAG-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106774331 22 - 170124641 CACATTTATGAGAACACTAGAG-
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108498199 22 - 171882078 CACATTTATGAGAACACTAGAG-
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103265804 22 - 162156779 CATGTTTATGAGAACACTAGAG-
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21188297 22 -  24206276 CACGTTTATGAGAACACTAGAG-
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22334175 22 + 158406734 CAGATTTATGAGAACATTAGAG-
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54487284 23 +  91889043 CAGGTTTATGAGAATGTTAAGGG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81443158 243 + 145441459 I

a score=1146107.000000
s hg38.chr15_KI270850v1_alt    425667 320 +    430880 AATATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGGTCACTATAATTTTAACTCTCATC----ACTTACCTGTCACACTGCTAACTGTATGGACTGTAAGCTCACCAATCTGATAAACTATAAAGGTCCCTCACAACCTGTATCT---------CAGCACTGCCCCAGAATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATACCACATGAAAGGCAGACCCGTATCACACTCCTGTCATAGGTA-T-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGATTTTAGAT-ACATCAAGAGAAAT
s panTro4.chr15              80208577 320 +  99548318 AATATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGGTCACTATAATTTTAACTCTCATC----ACTTACCTGTCACACTGCTAACTGTATGGACTGTAAGGTCACCAATCTGATAAACTATAAAGGTCCCTCACAACCTGTATCT---------CAGCACTGCCCCAGAATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATACCACATGAAAGGCAGACCCGTACCACACTCCTGTCACAGGTA-T-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGATTCTAGAT-ACATCAAGAGAAAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10222616 320 +  10928107 AATATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGCTCACTATAATTGTAACTCTCATC----ACTTACCTGTCACACTGCTAACTGTATGGACTGTTAGCTCACCAACTTGATAAACTATAAAGGTCCTTCACAACCTGTATCT---------CAGCACTGCCCCAGAATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATACCACATGAAAGGCAGACCCGTATCACACTCTCGTCATAGGTA-T-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAATGAC----------------TCCTTTCTTAAGATTTTAGAT-ACATCAAGAGAAAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17297202 318 - 121039945 AACATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGGTCACTATAATTGTAACTCTCATC----ACTTACCTGTCACACTGCTAACTGTATGGACTGTTAGCTCACCAATTTGATAAACTATAAAGGTCCTTCACAACctgtatct---------cagcactgccctagaatagtatctgctgcatttgcaggcactcaat--agataCCACATGAAAGGCAGACCCGTATCACACTCCTGTCATAGGTA-T-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGATTTTAGAT-ACATCAAGAGAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106774353 321 - 170124641 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGGTCACTATAATCGTAACTCTCATC----ACTTACCTGTCACAATGCTAACTGTATGGACTGTTAGCTCACCAATTTGATCAACTATAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAGGCACTCGATACAGATAACACATGAAAGGCAGACCCGTATCACACTCCTGTCATAGGTATT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108498221 320 - 171882078 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGGTCACTATAATCGTAACTCTCATC----ACTTACCTGTCACAATGCTAACTGTATGGACTGTTAGCTCACCAATTTGATCAACTATAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATAACACATGAAAGGCAGACCCGTATCACACTCCTGTCATAGGTA-T-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAAT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103265826 320 - 162156779 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGGTCACTATAATCGTAACTCTCATC----ACTTACCTGTCACACTGCTAACTGTATGAACTGTTAGCTCACCAATTTGATCAACTATAAAGGTCCTTCACAACCTGTATCT---------CAACAGTGCCCCAGCATAGTATCTGCTGCATTCGCAGGCACTCAATACAGATAACACATGAAAGGCAGACCCGTATCACACTCCTGTCATAGGTA-T-TTTTACCACC--------------TCACTCATAACCTTCATAAATTGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAAT
i papAnu2.chr7              C 0 I 317
s chlSab2.chr29              21188319 320 -  24206276 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGGTCACTATAACCGTAACTCTCATC----ACCTACCTGTCACACTGCTAACTGTATGGACTGTTAGCTCACCAATTTGATCAACTACAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATAACACATGAAAGGCAGACCCATATTACACTCCTGTCATAGGTA-T-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22334197 330 + 158406734 AATATTTCAAACCAAGTGACCGT--GAATA-CTGAAAGCACACAGTCACTTTAATTGTAGCTCTCATC----ACTTACCAGTCACACTGCTAACTGTATGGACTGTTAGCTCACCAAATTAATAAACTATGAAAGTCCTTCACAACCTGTATCT---------CAGCAATGTCC-AGCACAGAATCTGCTGCATTTTCAGGCACTCAATGCAGATACCACATGAAAGGCAGCCCCTTACAATACTCCTGTCACGGGTA-T-TTTTACCACTTTATTATATTCTTATCAATCATAACCTCCATAAATTGAAGTGAC----------------TCCTTTCTTAAGCTTTTAGA--ACATCAAGAGAAAT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81443401 313 + 145441459 AATATTTAATACCAAAATTGATCAAAAATAGTTGACAGCACATGATCACTGTAACTATAGCTTTTGTCCACAAATAACTAGTCAC--TATTCACTGCAAGTATCACTAACTCTACAATTTGATAAACTGT-AAGGCTGTTCACAGCCTATATCTATACTTCTGCAGCAGTACCCAACATTAAGATCTGCTATATTTTCAAGCTCTCAATATAGATACCATATGATAGCTAGATCCATATTATACTTCTGTCATAGGTA-C-TTTGGGCAAC--------------TTAAAAGT-ACTTGCATAAACAGTAATAG--------------------TTTCTTATGCTTT--------------AGAAAT
i mm10.chr7                 I 243 I 5
s canFam3.chr3               54487307 337 +  91889043 AATATTTAATACCTTGACTGCTCAAAAATA-TCCAGAACACAGGATCACTGTAAATGTAGCTCTTGTC--ATATTTACTTGTCAAACTGTTAGCTATATGCACTGTTAGCTCTGT-GTTTGATATATGAT-AAGGTCCTCCAAGGCCTTTATCT---------AAGCAGCACTC-AGCGTACTACCTGCAGCACTCCCAGGTACTCAATACACACAGCACAGGAAGGGCAGACCCACAGCACACCCCTTTCACAGGTA-TGCTCCACCACT--------------TCGATCACAAGCTCCATCAATGGCAGTGACTCCTTCAATTTTTTTTTCCTTTCTTTAATCTTAAGACAAGATCAGAATCAAT
i canFam3.chr3              C 0 C 0

a score=334725.000000
s hg38.chr15_KI270850v1_alt    425987 99 +    430880 ----ATTCA-TCAATTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAAGTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCTTCATC
s panTro4.chr15              80208897 99 +  99548318 ----ATTCA-TGAATTCTACCTCTTCTCCCTGTCAAAATTCTCAACCACTAAAGTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCTTCATC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10222936 96 +  10928107 ----ATTC----AATTCTACCTGTTCTCCCTCTCAAAATTCTCAGCCACTAAAGTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCTTCATC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17297520 99 - 121039945 ----ATTCA-TCAATTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAAGTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCCACATC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106774674 99 - 170124641 ----ATTCA-TCAGTTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAAGTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCCCCATC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108498541 99 - 171882078 ----ATTCA-TCAGTTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAAGTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCCCCATC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103266463 99 - 162156779 ----attca-tcagttCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAAGTCATTTTGGGATTCGGGGTTTTAGGT---TTGGACCACAGACCATTCCCCatc
i papAnu2.chr7              I 317 I 351
s chlSab2.chr29              21188639 99 -  24206276 ----ATTCA-TCAATTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAAGTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCCCCATC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22334527 98 + 158406734 ----ATTCATTCAATTCTACCTCTTCTCCCTGCCAAAATTCTCAGCCACT--AGTCATCTGGGGATTTGGGGCTTTAAGT---TTGGACCAGAGACCATTCCACACT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81443719 76 + 145441459 ----ATTCA--------CACACTGTCTTC---TCAAAA--CTCAATGACTA-------CTCAGAATTT-AGATTTTAAGT---TTTGATCACAGAGAATTCCTC---
i mm10.chr7                 I 5 C 0
s canFam3.chr3               54487644 98 +  91889043 ATTCAGTCA-TCAAGTTTATCTCTTCT----GTCAAAGCTCTAAGCCAC---AGTCATTTCAGGATTTGGGGTTTTAAGTCCCTTGGACCAGAGACAATTC-ACATG
i canFam3.chr3              C 0 C 0

a score=79916.000000
s hg38.chr15_KI270850v1_alt    426086 21 +    430880 AATAAAAAAACAAAGGCTCCA
s panTro4.chr15              80208996 21 +  99548318 AATAAAAAAACAAAGGCTCCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10223032 21 +  10928107 AATAAAAAAACAAAGGCTCCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17297619 21 - 121039945 AATAAAAGAACAAAGGCTCCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106774773 21 - 170124641 AATAAAAACACAAAGGCTCCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108498640 21 - 171882078 AATAAAAACACAAAGGCTCCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103266913 21 - 162156779 aataaaaacacaaaggctCCA
i papAnu2.chr7              I 351 C 0
s chlSab2.chr29              21188738 21 -  24206276 AATAAAAACACAAAGGCTCCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22334625 21 + 158406734 GACAAAAAAACAAAGGCTCCA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81443795 21 + 145441459 AAACGAAACTCCAAGGCTCCA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54487742 20 +  91889043 -AACAAAAAACAAAGAACCCA
i canFam3.chr3              C 0 I 5084

a score=2574.000000
s hg38.chr15_KI270850v1_alt    426107 1 +    430880 G
s panTro4.chr15              80209017 1 +  99548318 G
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10223053 1 +  10928107 G
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17297640 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106774794 1 - 170124641 G
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108498661 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103266934 1 - 162156779 G
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21188759 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22334646 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81443816 1 + 145441459 G
i mm10.chr7                 C 0 C 0
e canFam3.chr3               54487762 5084 +  91889043 I

a score=2097078.000000
s hg38.chr15_KI270850v1_alt    426108 618 +    430880 AGTTGTCTCAGAGCTGTTCTTGGACCTGGTCTCCATCACCTCTCCATATAATGCTTCTCTGGCTGCCTtgatgcag----aagag----ggaacttggagtctgggattctgatttaagccccagt--gctccattaactag-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttttt----atttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaaaCTAAAGGCTCTGGACAGTTGGTCTACATGACCCTACTCTTGCCCTCACCAATTTGACACAGCTTCCATTACTATCCTTTTTCTGCACTTACTGACAAGGTATCCTTCTTCCTATTTAAAAAGCAATT------TTGGAGTCCATTTTTTCTCATACCCACAGGGCCTCTTG----GTTATACCTGCCACAGCTCTCACACCTTT---GTAAACATCATCAGGTCTCTCCCATGTTTAGAACTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCCTCCGTACGGAG-------TA-------CCCCATCTCTACGG--CCTTTACTCATCTCTTTAACCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
s panTro4.chr15              80209018 618 +  99548318 AGTTGTCTCAAAGCTGTTCTTGGACCTGGTCTCCATCACCTCTCCATATAATGCTTCTCTGGCTGCCTtgatgcag----aagag----ggaacttggagtctgggattccgatttaagccccagt--gctccattaactag-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttttt----atttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaAACTAAAGGCTCTGGACAGTTGGTCTACATGACCCTACTCTTGCCCTCACCAATTTGACACAGCTTCCATTACTATCCTTTTTCTGCACTTACTGACAAGGTATCCTTCTTCCTATTTAAAAAGCAATT------TTGGAGTCCATTTTTTCTCATACCCACAGGGCCTCTTG----GTTATACCTGCCACAGCTCTCACACCTTT---GTAAACATCATCAGGTCTCTCCCATGTTTAGAACTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCCTCCGTACAGAG-------TA-------CCCCATCTCTACGG--CCTTTACTCATCTCTTTAACCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10223054 595 +  10928107 ACTTGTCTCAGAGCTGTTCTCGGACCTGGTCTCCATCACCTCTCCATATAATGCTTCTCTGGCTGCCTtgatgcag----aagag----ggaacttggagtctgggattctgatttaagccccagtgcgctccattaactgg-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttttt----atttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaaaCTAAAGGCTCTGGACAGTTGGTCTACATGACCCTACCCTTGCCCTCATCGATCTGACACAGCTTCCATTACTATCCTTTTTCTGCACTTACTG-------------------------AAAGCAATT------TTGGAGTCCATTTTTTCTCATACCCACAGGGCCTCTTG----GTTATCCCTGCCACAGCTCTCACACCTTT---GTAAACATCATCAGCTCTCTCCCATGTTTAGAACTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCCTCTGTACAGAG-------TA-------CCCCATCTCTACGG--CCTTTACTCATCTCTTTAATCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCCAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17297641 594 - 121039945 AGTTGTCTCAGAGCTGTTCTTGAACCCGGTCTTCATCACCTCTCCATATAATGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagt--gctccattaactgg-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttttt----atttgtaatgtgagaatgacaGAGTCTCATA----AATTCTCCTGAGGAATAAAAGAAACTAAAGGCTCCGGACAGTTGGTCTACATGACCCTACTCTCGCCCTCACCAATTTGACACAGCTTCCATTACTATCCTTCTTT----------------------------CTATTTAAAAAGCAATT------TTGGAGTCCATTTTTTCTCATACCCTCAGGGCCTCTTG----GTTATCCCTGCCACAGCTCTCACACCTTT---GTAAACATGATCAGCTCTCTCCCATGTTTATAATTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCATTCCCTAGCATC--CCCATCAGCCCTCCATACAGAG-------TA-------CCCCATCTCTACAG--CCTTTACTCATCTCTTTAATCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106774795 620 - 170124641 AGTTGTCTC--AGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagt--gctccattaattgggggaactttgacca------------------------------------atattctcaatttctctaagcaggtcttttt----ctttgtaatgtgagaatgacaGAGTCTCATA----AATTCTCCTGAGAAATAAAAGAAACTAAAGGCTCTGGACAGTTGGTCTACGTGACCCTACTCTTGCCCTCACCAATCTGACACAGCTTCCACTACTATCCTTTTTCTGCACTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAAGT------TTGGAGTAAATTTTTTCTCATACCCTCAGGGCTTCTTGGTCAGTTATCCCTGCCACAACTCTCACACCTTT---GTAAACATGATCAGCTCTCTCCCATGTTTAGAACTTTTCTTAACTCTGCTCTT-----TAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCCGTATAGAG-------TA-------CCCCATCTCTACCG--CCTTTACTCATCTCTTTAATCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108498662 620 - 171882078 AGTTGTCTC--AGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagt--gctccattaattgggggaactttgacca------------------------------------atattctcaatttctctaagcaggtcttttt----ctttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaaactaaaggctctggacagttggtctacatgaccctactcttgccctcaccaatctgacacagcttccactactatcctttttctgcactTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAACT------TTGGAGTAAATTTTTTCTCATACCCTCAGGGCTTCTTGGTCAGTTATCCCTGCCACAACTCTCACACCTTT---GTAAACATGATCAGCTCTCTCCCATGTTTAGAACTTTTCTTAACCCTGCTCTT-----TAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCCGTATAGAG-------TA-------CCCCATCTCTACCG--CCTTTACTCATCTCTTTAATCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103266935 622 - 162156779 AGTTGTCTCAGAGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGCTTCTCAGGCTGCCTTGATGCAGAAGAAAGAG----GGAACTTGGAGTCTGGGATTCTGATTTAAGCCCCAGT--GCTCCATTAATTGGGGGAACTTTGACCA------------------------------------ATATTCTCAATTTCTCTAAGCAGgtcttttt----ctttgtaatgtgAGAATGACAGAGTCTCATA----AATTCTCCTGAGGAATAAAAGAAACTAAAGGCTCTGGACAGTTGGTCTACGTGACCCTACTCTTGCCCTCACCAATCTGACACAGCTTCCACTACTATCCTTTTTCTGCACTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAAAT------TTGGAGTAAATTTTTTCTCATACCCTCAGGGCTTCTTGGTCAGTTATCCCTGCCACAACTCTCACACCTTT---GTAAACATGATCAGCTCTCTCCCATGTTTAGAACTTTTCTTAACCCTGCTCTT-----TAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCTGTATAGAG-------TA-------CCCCATCTCTACCG--CCTTTACTCATCTCTTTAATCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAt
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21188760 625 -  24206276 AGTTGTCTCAGAGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGTTTCTCAGGCTGCCTTGATGCAGAAGAAAAAG----GGAACTTGGAGTCTGGGATTCTGATTTAAGCCCCAGT--GCTCCATTAATTGGAGGAACTTTGACCA------------------------------------ATATTCTCAATTTCTCTAAGCAGGTCTTTTT----CTTTGTAATGTGAGAATGAC--AGTCTCATA----AATTCTCCTGAGGAATAAAAGAAACTAAAGGCTCTGGACAGTTGGTCTACATGACCCTACTCTTGCCCTCGCCAATCTGACACAGCTTCCACTACTATCCTTTTTCTGCACTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAAAT------TTGGAGTTCATTTTTTCTCATACCCTCAGGGCTTCTTGGTCAGTTATCCCTGCCACAACTCTCACACCTTT---GTAAACATGATCAGCTCTCTCCCATGTTTAGAACTTTTCTTAACCCTGCTCTTTCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCCATATAGAG-------TA-------CCCCATCTCTACCA--CCTTTACTCATCTCTTTAATCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22334647 623 + 158406734 AATTGTCTCAGAGCTGTTCCCTGACCTGGTCTCTATCATCTCTCCATATAATGCTTCTCAGGCTGCCTtgatgcagaaaaaagag----agagcttggagtctgggattctgatttaagccccagt--gctctattaactgg-ggaactttgacaa------------------------------------agaatttcagtttctctaagcaggtcttttt----ctttgtaatctgaga---acaGAGTCCTATA----AATTCTCCTGAGGAATTTAAGAAACTAAAGGCTCTGGACAGTTGGTCTACATGATCCTACTCTTGCCCTCACCAATTTGACATAGATTCCATTACTATCCTTTTTCTGCAGTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAATT------TTGGAGTGCATCTTTTCTCATACCCCCAGGGCCTCCTGGTCAGTTATCCCTGCCACACTTCTCACACCTTT---GTAAACATGATCAGCTCTCTCCCACATTTAGAATTTTCCTTAATCTTGCGCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCGTC--CACATCAGCCTTCCATATACAG-------TA-------CCCCATCTCTACTG--CCTCTACTCATCTCTTTAATCCTTGAAGGCAAGCATCAAATGCTTCTCTCCCTTTCCGCACATGCTAT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81443817 562 + 145441459 AGCTATGTCAGAGTTGTTTCCCAAACTCCTCT------CCTCTCCA---AGTGTTTCTCAAACTGCC-TGATGTAGAAAGAAGGGAAAAGGAACCTGAAGTTTGGGACCTCAATTTTAATCCTAGA--GCTCTA---------TAAACTTCAGCCA------------------------------------AGATTTTCAATTTAGCCAAGCATACCTTTTC----ATTCATGAT-----AATGAC--AGTCTCAAAAAATAATTGTTGT------TAGAAGATACTGAAGGCCCTAGACAACCGGTCATCTAGGTTCTTCTATT--------CATTCTGACATAACT----CTATTATCTTTTCCT-----CTACTACCAAAGAA--ATGAGTTCTA-TTAAAGAACAGTT------TTGA----CATTCT-----ACACCTTTGGGATCTCTTGATA-ATTATTACTTCAGTTACACATTCATCTTTTCAGTGAACAGGATCAACTCCCTTCAAATTTTAGACTGTTCCTTAGCCCCACACTCCCCTCTGGTA------------GTCTTCTTCTAGCTTC-------------TCTGTACAGAAACCTATTTC-------CTCTAACTCCCACA--CCCTTGCTTATCTCTTTAATCCTTGAAGTTAAACATCAGATGCCACTCTCC--TTCCCAACGTGTTAT
i mm10.chr7                 C 0 I 331
s canFam3.chr3               37397479 668 -  91889043 AGTTGCCACAGAGCAGTTCCCTGACCTG--CCCTATCTCCTCTC---------TTTTTCCGGCTTCCTTTAtgcag-agaaagaa----gacatttggagtctgggatcctcatttgagtccttgt--gctctgtcaactggttgATTTTTGAGGAAGATTTTCAAtttcctttttttttttttttttttttAGATTTTCAATTTCTTTAAGCATGTCGTGTTAATACTTTGCAATGTGAGATGGATACAGACTTACA---------TTGTTTAGGCTAAGAGACACTCTCAGCTCTG--CAGTTGGTCATCTAGTTGGTGTTCTTGCCTTCTCCAATTGGAC-TTGCTCTCATTA-TATTCTTTATCTTCAGCTATTGCAGGAGTGGCCTTCTCCCGGTTCAGAGAGCAGTTTGTGCATTGGAGTCCATCTT-TCTCACACCCTCAGGACCTTTTGGTACATTGTTTCTGCCACACCTTTCACCTCTGTTG-GTGAACACGATTACTTCTCTCCTTTGTTTAGACCTTACTTTAGTACAGCACTCCCCTCAAGCAGTCAGCCTCAGTGGCTTTGCTTGGCTTTTTCCCATCAAACTTTTGTACATAG-------TACCTCCCTCCCCATTTTGGCCTGCCCTTTGCTCATCTCTTAAATCCTTGATATCTGACATCAGATGCTCCTTTCCTGTCTCACATGTGCATT
i canFam3.chr3              n 5084 C 0

a score=68691.000000
s hg38.chr15_KI270850v1_alt    426726 24 +    430880 TCTGAAACAC-TTTTTTTCAAACCA
s panTro4.chr15              80209636 24 +  99548318 TCTGAAACAC-TTTTTTTCAAACCA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10223649 24 +  10928107 TCTGAAACAC-TTTTCTTCAAACCA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17298235 24 - 121039945 TCTGAAACAC-TTTTTTTCAAACCA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106775415 25 - 170124641 TCTGAAACACTTTTTTTTCAAACCA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108499282 25 - 171882078 TCTGAAACACTTTTTTTTCAAACCA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103267557 25 - 162156779 tctgaaacacttttttttcaaaCCA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21189385 25 -  24206276 TCTGAAACACTTTTTTTTCAAACCA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22335270 22 + 158406734 TCTGAAACAC---TTTTTCAAAACA
i calJac3.chr6              C 0 C 0
s canFam3.chr3               37398147 17 -  91889043 TCTGAAAC---TTTTTCCCA-----
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81444379 331 + 145441459 I

a score=663220.000000
s hg38.chr15_KI270850v1_alt    426750 182 +    430880 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGACGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTCTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaactttttggtctgaggactcctttatactcttaaaaat--tactgagg
s panTro4.chr15              80209660 182 +  99548318 AGTTCACTGTGCCTTAACAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTCTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaactttttggtctgaggactcctttatactcttaaaaat--tactgagg
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10223673 182 +  10928107 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTCTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaacattttggtctgaggactcctttatactcttaaaaat--tactgagg
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17298259 182 - 121039945 AGTTCACTGCGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaacattttggtctggggactcctttatactcttaaaaat--gactgagg
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106775440 182 - 170124641 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108499307 182 - 171882078 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103267582 182 - 162156779 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGCAGTGGTCCACAACCATGTTGGTCTCAGGACtcctttatactcttaaaaat--tactgagg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21189410 182 -  24206276 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22335292 181 + 158406734 AGTTCACTGTGCCTTATCAAATCCTATGGACATACCCTGAGCCTTTTAAGAGGTCTTCATTCCTGTTTGGATGTTCCTACAGG---ATCTTTGAAAAGTACAAATTTAATCACCTACTCCAGAGGGcagtggtccacaaacattttggtctcagcactcctttatactctt-aaaat--tagtgagg
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81444710 174 + 145441459 AGTTCACTGTGCTGTATAAAAACCAATGAGCAATTCTTGAACCTTTCAAGATATTTTC-TTTCTGCATGTACGTTCCTATCAATACACCTTTGAAAAATACAAATAAGCAAACATCCTGTATAGGACAACTTTTCAC-----------TCTCAGAA-TTCTTTACACCTCTAACATTCCTACAGATG
i mm10.chr7                 I 331 C 0
s canFam3.chr3               37398164 156 -  91889043 AGTACACTGTGCCGT---------TAGGAGCATTTCTTCAGGCTTTATGGATGTTTGTATTTCTGCCTGGATGTTCCTATATG---ATCTTTGAAAAGTGCCAGTTTGATTACCTGTTGT--AATGCAGGGGTTCTCAGACATTTTCATCTCAGACTTCC---------------AT--TACTGAGG
i canFam3.chr3              C 0 I 50

a score=45985.000000
s hg38.chr15_KI270850v1_alt    426932 16 +    430880 taattttaagtac------ttt
s panTro4.chr15              80209842 16 +  99548318 taattttaagtac------ttt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10223855 22 +  10928107 taattttaagtacttttaattt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17298441 22 - 121039945 taattttaagtaattttaattt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106775622 22 - 170124641 taattttaagtactttcaattt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108499489 22 - 171882078 taattttaagtactttcaattt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103267764 22 - 162156779 TAATTTTAAGTACTTTCAATTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21189592 22 -  24206276 taattttaagtactttcaattt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22335473 16 + 158406734 taattttaagcac------ttt
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81444884 15 + 145441459 -GATCTTAAGAGCTCT------
i mm10.chr7                 C 0 I 1844
e canFam3.chr3               37398320 50 -  91889043 I

a score=52998.000000
s hg38.chr15_KI270850v1_alt    426948 17 +    430880 taattactcaagagctt
s panTro4.chr15              80209858 17 +  99548318 taattactcaagagctt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10223877 17 +  10928107 taattactcaagagctt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17298463 17 - 121039945 taattactcaagagctt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106775644 17 - 170124641 taattactcaaaagctt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108499511 17 - 171882078 taattactcaaaagctt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103267786 17 - 162156779 TAATTACTCAAAAGCTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21189614 17 -  24206276 taattactcaaaagctt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22335489 17 + 158406734 gaattactcaagagctt
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e canFam3.chr3               37398320 50 -  91889043 I

a score=956143.000000
s hg38.chr15_KI270850v1_alt    426965 286 +    430880 tttgtgtaagtaggtca----tatgaatattcacccattagaaatt----aaaaaggggtagatttattaaccatt-aaaa----aaacctattacatattaacacaat--gattttccaagac-aaaaaaaatttatggagtg-gca------ttgacatttttgcagatctctttagtatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatgtgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagatacatagttggaaaaaggag
s panTro4.chr15              80209875 286 +  99548318 tttgtgtaagtaggtca----tatcaatattcacccattagaaatt----aaaaaggggtagatttattaaccatt-aaaa----aaacctattacatattaacacaat--gattttccaagac-aaaaaaaatttatggagtg-gca------ttgacatttttgcagatctctttagtatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatgtgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagatacatagttggaaaaaggag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10223894 287 +  10928107 tttgtgtaagtaggtca----tatcaatattcacccattagaaatt----aaaaaggggtagatttattaaccatt-aaaa----aaacctattacatattaacacgat--gattttccaagacaaaaaaaaatctatggagta-gta------ttgacatttttgcaaatctctttagtatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatgtgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagatacgtagttggaaaaaggaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17298480 286 - 121039945 tttgtctaagtaggtca----tatcaatattcacccattagaaatt----taaaaggggtagatttattaaccatt-aaaa----aaaccgattacatattaacacaat--cattttccaagac-aaaaaaaatttatggagtg-gca------ttgacatttttgcaaatctctttagtatatggtttaatataagatagcgggattttctggtctgtttctgtatttaatatgttgtcatgtgttattctggctgaagtatatgaagaaaatccagcctcacacagatacgtagttggaaaaaggag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106775661 288 - 170124641 tttgtgtaagtagctca----tatcaatatgcacccactagaaata----gaaaaggggtagatttattaatcattaaaaa----aaacctattacatattaacacagt--gattttccaagacaaaaaataatttatggaatg-gca------ttgacatttttgcaaatctctttactatctggtttaatataagatagtgggattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacggatacgtagttggaaaaaggag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108499528 287 - 171882078 tttgtgtaagtagctca----tatcaatatgcacccactagaaata----gaaaaggggtagatttattaatcatt-aaaa----aaacctattacatattaacacaat--gattttccaagacaaaaaataatttatggaatg-gca------ttgacatttttgcaaatctctttactatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagatacgtagttggaaaaaggag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103267803 287 - 162156779 TTTGTGTAAGTAGGTCA----TATCAATATGCACCCACTAGAAATA----GAAAAGGGGTAGATttattaatcatt-aaaa----aaaccTATTACATATTAACACAAT--GATTTTccaagacaaaaaataatttatggagTG-GCA------ttgacatttttgcaaatctctttactATCTGGTTTAATATAAGATAGCGGGATTTTCTGGTCTGTTTCTGTATTTAATTTGTTGTCATGTGTTATTCtggttgaagtatatgaagaaaatccagcCTCGCACAGATACGTAGTTGGAAAAAGGAG
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21189631 287 -  24206276 tttgtgtaagtaggtca----tatctatatgcacccattagaaata----gaaaaggggtagatttattaatcatt-aaaa----aaacctattacatattaacacaat--gattttccaagacaaaaaaaaatttatggagtg-gca------ttgacatttttgcatatctctttactatctggtttaatataagatagcaggattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagatacgtagttggaaaaaggag
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22335506 292 + 158406734 tttgtgtaagtagagca----tttcaatattcgcccatcagaaataaaagaaaaaggggcagatggattaatcatttttaa----aaacctattacatattaatacaac--aatttcccaagacaaaaaaaaatttaaggagtg-gca------atgacatttttgcaaatctctttagtatctgattcaatataagatggtgggattttctggtctgtttctgtatttaatttcttgccatgtgttgttttggttgaagtatatgaagaaaatccagcctcacacaggtatgtagttggaaaaaggaa
i calJac3.chr6              C 0 C 0
s canFam3.chr3               37398370 291 -  91889043 Cttgtgtatgtggattgtgtttattgatatttgcccattagaaatt----aaa---------actgaaaaattatt-aaagttacaaatccatttcatattaataaagttatatttttggagacaaaggaagatgaaaagagtgagcagtcttttttgtatttttgcaaatctctttagtattggatttattagaagatagctggcttttc----ctgtctctgtgtttaatttgttgccgtgtgttgtttcagttgaaatatatgaagaaaatttggcctcacacagatgctgggttgaaaagaggag
i canFam3.chr3              I 50 I 188
e mm10.chr7                  81444899 1844 + 145441459 I

a score=1941117.000000
s hg38.chr15_KI270850v1_alt    427251 615 +    430880 tattttaatatcattgtcagacaactgtggcta-------ttaatactacaccaaaattcccaacaaatggtaacttcttaaagattagttacaatatggaatctgaaaccatat----gtactcttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttactcct---------------atctgttagtcatttgacaaatattggc----ttga--attatgcaa-----------------------------------atataacaaacgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggacttcaagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc----ttatttttttcttcagtgctcaaattgtatc-actggcaacaaataaagtgagctatttct-tatgaagtgactgacttacttggttgattttcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaagaaaaaaaaggttttca------------aagg----aaaaaaagaggcttattcttgaaactcagt--------cacatttccttgagacaatcatcatacttggatatgaagcaaaagtactttatactgacttctcatt
s panTro4.chr15              80210161 615 +  99548318 tattttaatatcattgtcagataactgtggcta-------ttaatactacaccaaaattctcaacaaatggtaacttcttaaagattagttacagtatggaatctgaaaccgtat----gtactcttcatatgctgttacattaaaatacatgggtcaatcttgcattttggatggatcttttactcct---------------atctgttagtcatttgacaaatattggc----ttga--attatgcaa-----------------------------------atataacaaatgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggacttcaagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc----ttattttcttcttcagtgctcaaattgtatc-actggcaacaaataaagtgagctatttct-tatgaagtgactggcttacttggttgattttcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaagaaaaaaaaggtgttca------------aacg----aaaaaaagaggcttattcttgaaactcagt--------cacatttccttgagacaatcatcatacttggatatgaagcaaaagtactttatactgacttctcatt
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10224181 616 +  10928107 tattttaatatcattttcagacaactgtggcta-------ttaatactacaccaaaattctcaacaaatggtaacttcttaaagattagttacaatatggaatccgaaaccatat----gtactctt--tatgctgttacattaaaatacatgggtcaatcttgcattttggatggatcttttactc-------------------ctgttagtcatttgacaaacgttggc----ttca--attatgcaa-----------------------------------atataacaaacgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggactttaagtattgggg-aagtgtcaagtttatgtggtggcagataaaggtcttccaaaattc----ttatttttttcttcagtgctcaaattgtatc-actggcaacaaatatagtgagttatttct-tatgaagtgactggcttacttggttgattttcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaagaaaaaaaaggtgttca------------aagg----aaaaaaagaggcttattcttgaaactcagtcacataaacacatttccttgagacaatcatcatacttggatatgaagcaaaagtactttatactgacttctcatt
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17298766 627 - 121039945 tattttaatatcattttcagacaactgtggcta-------ttaatactacaccaaaattctcaacaaatggtaatttcttaaagattagttacaatatggaatctgaaaccatat----gtattcctcatatgctgttacattaaaacacatgagtcaatcttgcattttggatggatcttttactcctatctg----------atttgttagtcatttgacaaatattggc----ttga--attatgcaa-----------------------------------atataacaaacgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggacttcaagtattggggcaagcgtcaagctcatgtggcggccaataaaggtcttccagaattc----ttatttttttcttcagtgctcaaattgtatc-actggcaacaaatatagtaagttatctct-tatgaagtgactggcttacttggttcatttgcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaag-aaaaaaaggtgttca------------aagg----aaaaaaagaggcttattcttgaaactcagtcacataaacacatttccttgagacaatcatcatacttggatatgaagcaaaagtactttatactgacttctcatt
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106775949 641 - 170124641 tattttaataccattttcagacaactatggcta-------ttaatactacaccaaaattctcaacaaatggtaacttcttaaagattagttacaatatggaatctgaaaccatat----gtactcttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttacgcctatctgattttctatcatatgttagtcatttgacaaatact-gc----ctga--attatgcaa-----------------------------------atataacagatgttgacatactagttaatagtaaatagtaccaccaatctcatc--aggggtctttaagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattctttttttttttttctttcagtgctcaaattgcatc-agtggcaacaaatatagtgagttatttct-tatgaagtgactggattactctgttaattttcaagaaaatgtctgtcaaatacccaaagttca--ataaccacagtttgttagttgttgttctggtaaag-ataaaaaggtgtttc------------aagg---aaaaaaaagaggcttattcttgaaactcagtcacataaacacttttcctcgagataatcaccatacttggatatgaagtaaaagtactttatactgacttctcatt
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108499815 640 - 171882078 tattttaataccattttcagacaactatggcta-------ttaatgctacaccaaaattctcaacaaatggtaacttcttaaagattagttacaatatggaatctgaaaccatat----gtactcttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttacgcctatctgattttctatcatatgttagtcatttgacaaatact-gc----ctga--attatgcaa-----------------------------------atataacagatgttgacatactagttaatagtaaatagtaccaccaatctcatc--aggggtctttaagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc-ttttttttttttctttcagtgctcaaattgcatc-agtggcaacaaatatagtgagttatttct-tatgaagtgactggattactctgttaattttcaagaaaatgtctgccaaatacccaaagttca--ataaccacagtttgttagttgttgttctggtaaag-ataaaaaggtgtttc------------aagg---aaaaaaaagaggcttattcttgaaactcagtcacataaacacttttcctcgagataatcaccatacttggatatgaagtaaaagtactttatactgacttctcatt
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103268090 638 - 162156779 TATTTTAATACCATTTTCAGACAACTGTGGCTA-------TTACTACTACaccaaaattctcaacaaatggtAACTTCTTAAAGATTAGTTACAATATGGAATCTGAAACCATAT----GTACTCTTCATATGCTGTTACATTAAAACACATGGGTCAATCTTGCATTTTGGATGGATCTTTTACGCCTATCTGATTTTCTATCATATGTTAGTCATTTGACAAATACT-GC----CTGA--ATTATGCAA-----------------------------------ATATAACAGATGTTGACATACTAGTTAATAGTAAATAGTACCACCAATCTCATC--AGGGGTCTTTAAGTATTGGGGCAAGTGTCAAGCTCATGTGGTGGCAGATAAAGGTcttccaaaattc--tttttttttttctttcagtgctcAAATTGCATC-AGTGGCAACAAATATAGTGAGTTATTTCT-TATGAAGTGACTGGattactttgttcattttcaagaaaatgtctgccaaatacccAAAGTTCA--ATAACCATAGTTTGTTAGTTGTTCTtctggtaaaa-ataaaaaggtgtttc------------aagg----aaaaaaagaggctTATTCTTGAAACTCAGTCACATAAACACTTTTCCTGGAGATAATCACTATACTTGGATATGAAGTAAAAGTACGTTATACTGACTTCTCATT
i papAnu2.chr7              C 0 I 324
s chlSab2.chr29              21189918 639 -  24206276 tattttaataccattttcagacaactgtggcta-------ttaatactacaccaaaattctcaacaaatggtaacttcttaaagattagttacaatatggaatctgaaaccatat----gtactcttcatatgctgttacattaaaacacatgggtcaatcttgcattttggat-gatcttttacgcctatctgattttctatcatatgttagtcatttaacaaatact-gc----caga--attatgcaa-----------------------------------atataacagatgttgacatactagtgaatagtaaatagtaccaccaatctcatc--aggggtctttaagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattctttttttttttttctttcagtgctcaaattgcatc-agtggcaacaaatatagtgagttatttct-tatgaagtgactggattactttgttcattttcaagaaaatgtctgccaaatacccaaagttca--ataaccatagtttgttagttgttcttctggtaaag-ataaaaaggtgttcc------------aagg----aaaaaaagaggcttattcttgaaactcagtcacataaacacttttccttgagataatcagcatacttggatatgaagtaaaagtactttatactgacttctcatt
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22335798 609 + 158406734 tattttaatatcattttcagacaactctggttattc---tttaatactacaccaaaattctcaacaaatggtaacttcttaaagattagttacaacatgaaatctggaaccatat----gtactcttcatatgctgttacattaaaacacataggtcaagcttatagtttggatggatcttttacttatatctgtttttctatcatatgttagtcatttgacaaatact-gtctcactga--gttatgcaa-----------------------------------atataacaaatgttgacacactagtt-------aacagtaccagcaatctcatc--aggagtttttaagtattggggcaactgttaagctcacacggtgacagataaaggtcttccaaatttt--------------------------------aac-attgg---caaatatagtgagttatttct-cattaagtgactggcttactttgttcattttcaataaaatgtctgccaaatacgcaaacctga--ataaccatagtttgtcagttgttcctctagtaaag-aagaaaaggtgtttc------------cagggggaagaaaaagaggcttattcttgaaactcagtcatataaacac-tttccttgagataatcatcgtacttggatataaagcaaaagtactttatgctgacttctcatt
i calJac3.chr6              C 0 C 0
s canFam3.chr3               37398849 665 -  91889043 tatttaaataaccttttcatttaattgtggctattcctttttgatactacactaaaa--ctcaacaagtattaacttcttaaaggtcagttgcaacatggattccaaagccttataggagtactct---tactctgttagattaaaacacatatatctctctcatactttggatagatcattcacccatgcctgattttgta--acaccgtaatcatttgataaatact-gg----ttcattgttatgcaatattcatagtaaatgtataatgtctgcacatacacatatatacactgctgacacactagtt-------aattacaccatcagtctcatcagaggagtcttaaaatattgaggaaa----------------gtggccgatgagggtttcccagagttc---tgttttttttccttcaaatcttaaattttaactgttggcaacaaatactgaccattatttttatttgaagtgtttgacttgctttg----ttttcaagagaatgtttgccaagtacccaaagttggatataactatagtatatcagttgtggtt----tcaag-tgaaaaagctatttctttaaaaaaacaaaca----aaaaaaaactagttcttcctgaaactcaggcacataaacactttcccttgagacgactactaaacttcaatatgcagcaagtgggctttatgcttacttcccatt
i canFam3.chr3              I 188 C 0
e mm10.chr7                  81444899 1844 + 145441459 I

a score=305394.000000
s hg38.chr15_KI270850v1_alt    427866 85 +    430880 tgtcacacagaatattaaaggcatatattcaagggctgagatgtaatgaaattaattttactgcttcctcaaggacatttgtaag
s panTro4.chr15              80210776 85 +  99548318 tgtcacacagaatattaaaggcatatattcaacggctgagatgtaatgaaattaattttactgcttcctcaaggacatttgtaag
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10224797 85 +  10928107 tgtcacacagaatattaaaggcatatattcaagggctgagatgtaatgaaattaattttactgcttcctcaaggacatttgtaag
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17299393 85 - 121039945 tgtcacacagaatattaaaggcatatattcaaggcctgagatgtaatgaagttaattttactgcttcctcaaggatatttgtaag
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106776590 85 - 170124641 tgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacatttgcaag
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108500455 85 - 171882078 tgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacatttgcaag
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103269052 85 - 162156779 tgtcacacagaatattaaagGCATATATTCAAGGGCTGagatttaatgaaattaattttactgCTTCCTCAAGGACATTTGCAAG
i papAnu2.chr7              I 324 C 0
s chlSab2.chr29              21190557 85 -  24206276 tgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacatttgcaag
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22336407 84 + 158406734 tgtcacacagaatattaaa-gcatatattcaaggaccaaaatttaaggaaattaattttactgcttcctcaaggacatttataag
i calJac3.chr6              C 0 I 306
s canFam3.chr3               37399514 81 -  91889043 tgtctcacagaatactaaaggcttatactcaagggtcaggatttaata----catttttactgctttctcaaggacatcaataag
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I

a score=4780820.000000
s hg38.chr15_KI270850v1_alt    427951 1562 +    430880 tgacactggcttttctgggaatgtgtaccatgaagaatacaatgactgc-tactacagtttaatggcattgccctgattcctgctaagtaagtgccagct-gttttactcacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-cacgtcttagaattataaaaatacttctgactttat-agcctcttaaagggttttggtgac--cactaggcaggcatg-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtccgCCTTCAGCTTAGTGGCCAAGTTAAGTCCCTCCTGGTCTATTCCT---ACTTTATTCTGTT-------GTGTGTTCCCTCTCAATAAAAGGACAATAGTTAtaagtgtgtatcttgatcaacattcac---------ttatctgtacataccggagcaaccaccacacacagcaagacacagaacatttccaacactctataaggttcccctgtgccctttcccacactatcccccaaa------------gagtttactattcaggcttctgttgttaccagttagttttgcccatt-tttgaacctcttataaatgcaatcatgtgg---gtattcttttgggtctggctttttttttttcc--ccacttaacttagtatctgacatgtctacacattaaagtatagaacagtggtttttatcactgtg-----ctacatattaatagatgtggatat------atgtatttatccatattcctgCTCAAGGGTGTACAGAAAAGATTTAAAGTAACAGGTCTGACTGGtgtcttttagctaccatctgggaacctaaattttgagttcccaccattcccagaact----gagtgacttactataccc-------------------------aaaggaacaaacaatatggtttatgctgaacatcggctttcctcctggagtctgaaattttggtacatttcaggcagaggctacctattcaaccagtcctcagacacacacgcgcaaac--------actctctctc--tctctctctctctgg-------------gtgcccagattctaacaagctattctggctggcaacattttacatatgttgtca------gttgtaggggaatta---aactatgtc---ctgtttaactctcccgggaaaagaacattggaagcttgtaccagatttcaccc------------cacgtgccttttccctttgatggtttttctccatatcctttagctgtaagc----ttagcta-------tgagaaccactatatgctg-actcctg----tgaatcttcctagtcaatcatctaatttagg---cactgtcttggggGAC-CA--GACATAACAGGCGTTTGTTGTTTTGTCCTA-tttttagggacagggtctggatatgtggtccagaccagaattgaactcctaggctcaagggattctcctgcctcagcctccccggtagctggtactacaggtgCCACAACTAGCTTGCTttttcttcagattttgaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtgctcatttctcttgcacataggaacacaagtg-gactaccaggtcat
s panTro4.chr15              80210861 1563 +  99548318 tgacactggcttttctgggaatgtgtaccatgaagaatacaatgactgc-tactacagtttaatggcattgccctgattcctgctaagtaagtgccagcc-gttttactcacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-catgtcttagaattataaaaatacttctgactttat-agcctcttaaagggttttggtgac--cactaggcaggcatg-gacctaacttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtctgCCTTCAGCTTAGTGGCCAAGTTAAGTCCCTCCTGGTCTATTCCT---ACTTTATTCTGTT-------GTGTGTTCCCTCTCAATAAAAGGACAATAGTTAtaagtgtgtatcttgatgaacattcac---------ttatctgtacataccggagcaaccaccacacacagcaagacacagaacatttccaacaatctataaggttcccctgtgccctttcccacactatcccccaaa------------gagtttactattcaggcttctgttgttaccagttagttttgcccatt-tttgaacctcttataaatgcaatcatgtgg---atattcttttgggtctggc-tttttttccccc--ccacttaacttagtatctgacatgtctacacattaaagtacagaacagtggtttttatcactgtg-----ctacatattaatagatgtggatat------atgtatttatccatattcctgctCAAGGGTGTACAGAAAAGATTTAAAGTAACAGGTCTGACTGGtgtcttttagctaccatctgggaacctaaattttgagttcccaccattcccagaact----gagtgacttactataccc-------------------------aaatgaacaaacaatatggtttatgctgaacatcggctttcctcctggagtctgaaattttggtacatttcaggcagaggctacctattcaaccagtcctcagacacacacgtgcaaac--------actctctctctgtctctctctctctgg-------------gtgcccagattctaacaagctattctggctggcaacattttacatatgttgtca------gctgtaggggaatta---aactatgtc---ctgtttaactctcccgggaaaagaacattggaagcctgtaccagatttcaccc------------cacgtgccttttccctttgatggtttttctccatatcctttagctgtaagc----ttagtta-------tgagaaccactatatgctg-actcctg----tgaatcttcctagtcaatcatctaatttagg---cactgtcttggggGAC-CA--GACATAACAGGCGtttgttgttttgtccta-tttttagggacagggtctggatatgtggtccagaccagaaatgaactcctaggctcaagggattctcctgcctcagcctccccggtagctggtactacaggtgCCacaactggcttgctttttcttcagattttgaatattatgaataaaactgctgtgaatattctagtgcatgcctttttatactcacatgtgctcatttctcttgcacataggaacacaagtg-gactaccaggtcat
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10224882 1565 +  10928107 tgacactggcttttctgggaatgtgtaccatgaagaatacaatgactgc-tactacagtttaatggcattgccctgattcctgctaagtaagtgccagcc-attttacccacccccactgctttcgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-catgtcttagaattataaaaatacttctgactttat-ggcctcttaaagggttttggtgac--cactaggcaggcatg-gatctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatatgaaaccctccatggtctgCCTTCAGCTTAGTGGCCAAGTTAGATCCCTCCTGGTCTATTCCT---ACTTTATTCTGTT-------GTGTGTTTCCTCTCAATAAAAGGACAATAGTTACaagtgtgtatcttgatcaagattcac---------ttatctgtatacaccggagcaaccaccacacacagcaagacacagaacatttccaacattctataaggttcccctgtgccctttcccacactatcccccaaa------------gagtttactattcaggcttctgttgttaccaattagttttgcccatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttgggtctggc-ttttttttttcc--ccacttaacttagtatctgacatgtctacacattaaagtatagaacagtggtttttatcactgtg-----ctacatattaatagatgtggacat------atgtatttatccatattcctgctCAAGAGTGTACAGAAAAGATTTAAAGTAACAGGTCTGACTGAtgtcttttagctaccatctgggaacttaaattttgagttcccaccattcccacaact----gagtgacttactataccc-------------------------aaatgaacaaacaatatggtttatgctgaacatcggctttcctcctggagtctgaaattttggtacatttcaagcagaggctacctatttaaccagtcctcagacacacacgcgcacac--------actctctctg--tctctctctctctgg-------------gtgcctagattctaacaagctattctggctggcaacatttcacatgtgttgtca------gttgtgggggaatta---aactatgtc---ctgtttaactctccagggaaaagaacattggaagcttgtaccagatttcaccc------------cacttgccttttccctttgatggtttttctccgtatcctttagctgtaagc----tcagcta-------tgagtaccactatatgctg-agtcctgtgaatgaatcttcctagtcagtcatctaatttggg---cactgtcttggggGAC-TA--GACATAACAGGCGtttgttgttttgtccta-tttttagggacagggtctggatatgtggtccagaccagaattgaactcctaggctcaagggattctcctgcctcagcctccccggtagctggtactacaggtgcCACAAATGGCTTGCTttttcttcagattttgaatattatgaataaaactgcagtgaatattcttgtgcatgcctttttatactcacatgtactcatttctcttgcacacaggaacacgagtg-gactactaggtcat
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17299478 1543 - 121039945 tgacactggcttttctgggaatgtgtaccatgaagaatacaatgactgc-cactacagtttaatggcactgccctgattccccctaagtaagtgccagcc-attttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-catgtcttagaattataaaaatacttctgactttat-ggcctcttaaagggttttggtgaccacactaggcaggtaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaacagcatataaaacccttcatggtctgCCTTCAGCTTAGTGGCCAAGTTAGATCCCTCCTAGTCTATTCCC---ACTTTATTCTGTT-------GTGTGTTCTCTCTCAATAAAAGGGCAATAGTT----gtgtgtatcttgatcaagattcac---------gtatctgtatatactggagcaaccaccacacacagcaagatacagaccatttccaacactctgtaaggttcccctgtgccctttcccacactatcccccaaa------------gagtttactattcaggcttctattgttaccaattagttttgcccatt-tttgaacctcttataaatgcaatcatgtaa---gtattcttttgggtttgac-ttttttttcccc---------acttagtatctgacatgtctacacattaaagtatagaacaatggtttttattactgtg-----ctatatattaatagatgtggatat------atgtatttatccatattcctgctCAAGGGtgtacagaaaagacttaaagtaacaggtctgactggtgtcttttagctaccatctgggaacttaaattttgagttcccaccattcccagaact----gagtgacttactataccc-------------------------aaatgaacaaacaatatggtttatgccgaacatcagctttcctcctggagtctgaaattttggtacatttcaggcagaggctacctatttaaccagtcctcagacacacacacacgca---------actctctc----tccgtctctctctgg-------------gtgc-------ctaacaagctattctggctggcaacgttttacatatgttgtca------gttgtgggggaatta---aactatgtc---ctgtttaactctcccgggaaaagaacattggaagcttgtaccagacttcaccc------------cacgtgccttttccctttgatggcttttctccgtatcctttagctgtaagc----ttagcta-------tgagtaccactatatgctg-agtcctg----tgaatcttcctagtcaatcatctaatttggg---cactgtcttgggggac-cc--gacataACAGGCGtttgttgttttgccctattttttagggacagggtctggatatgtggtccagaccagacttgaactcctaggctcaagggattttcctgcctcagcctccccggtagctggtactacaggtgCCACAACCGGCTTGCTttttcttcagattttgaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcacatgtactcatttctcttgcacataggaacacaagtg-gactaccaggtcat
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106776675 1548 - 170124641 tgacaccggcttttctgggaatgtgtagcatgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----tatgtgccagct-gttttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattataaaaatacttctgactttgt-ggcctcttaaagggttttggtgac--cactaggcaggcaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtctggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTGTGTTCTCTCTCAATAaaagggcactagttatgaatatgtatcttgatcaagattcac---------ttatctgtatataccggagcaaccaccacacatagcaagataaagaacatttccaacactctataaggttcccctgtgccctttcccacactat-ccccaaa------------gagtttactattcaggcttctgttgttaccaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttgggtc--------ttttttccc--ccacttaacttagtatctgacatatctacacattgaagtatagaacagtggtttttattactgtgcagtactacatattaatagatgtggatat------atgtatttatccatattcctgctCAAGGTTGTACAGAAAAGATTTAAAGTAACAGGTCTGACTGGtgtcttttagctaccatctgggaacttaaattttgagttcccaccattcccagaact----gagtgacttactataccc------------------------aaaatgaacaaacaatatggtttatgctgaacatgggctttcctcccgg--------attttggtacatttcaggcagaggctacctatttaaccattcctcagacacatacacgcacac--------actctctctctgtctctctctctctgg-------------gtgcccagattctaacaagctattctggctggcgacattttacatatgttgtca------gttgta-gggaatta---aactatgtc---ctgtttaactctcccgggaaaggaatattggaagcttgtaccagacttcaccc------------aatgtgccttttccctttgatggtttttctctgtgtcctttagctgtaagc----ttagcta-------tgagtaccactatacgcta-cgtcctg----tgaatcttcctagtcaatcatctaatttggg---cactgtcttgggggac-cc--AACATAACAGGCAtttattgttttgtccta-cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaagggactctcctgcctcagcctccccagtagctggtgctacaggcgCCATAACCAGCTTGCCttttcttcagattttaaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtactcacttctcttgcatataggaacacaagtg-gatcactaggtcat
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108500540 1547 - 171882078 tgacaccggcttttctgggaatgtgtagcatgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----tatgtgccagct-gttttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattataaaaatacttctgactttgt-ggcctcttaaagggttttggtgac--cactaggcaggcaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtctggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTGTGTTCTCTCTCAATAaaagggcactagttatgaatatgtatcttgatcaagattcac---------ttatctgtatataccggagcaaccaccacacatagcaagataaagaacatttccaacactctataaggttcccctgtgccctttcccacactat-ccccaaa------------gagtttactattcaggcttctgttgttaccaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttgggtc--------ttttttccc--ccacttaacttagtatctgacatgtctacacattgaagtatagaacagtggtttttattactgtgcagtactacatattaatagatgtggatat------atgtatttatccatattcctgctCAAGGTTGTACAGAAAAGATTTAAAGTAACAGGTCTGACTGGtgtcttttagctaccatctgggaacttaaattttgagttcccaccattcccagaact----gagtgacttactataccc------------------------aaaatgaacaaacaatatggtttatgctgaacatgggctttcctcccgg--------attttggtacatttcaggcagaggctacctatttaaccattcctcagacacatacacgcacgc--------actctctctctgtctctctctctctgg-------------gtgcccagattctaacaagctattctggctggcgacattttacatatgttgtca------gttgta-gggaatta---aactatgtc---ctgtttaactctcccaggaaaggaatattggaagcttgtaccagacttcaccc-------------atgtgccttttccctttgatggtttttctctgtgtcctttagctgtaagc----ttagcta-------tgagtaccactatacgcta-agtcctg----tgaatcttcctagtcaatcatctaatttggg---cactgtcttgggggac-cc--AACCTAACAGGCGTTTATCGttttgtccta-cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaagggactctcctgcctcagcctccccagtagctggtgctacaggcgCCATAACCAGCTTGCCttttcttcagattttaaatattatgaataaaactgctatgaatattcttgtgcatgcctttttatactcatatgtactcacttctctcgcatataggaacacaagtg-gatcactaggtcat
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103269137 1556 - 162156779 TGACACCGGCTTTTCTGGGAATGTGTAGCATGAAAAATACAATGGCTGC-TACCACAGTTTAATGACATTGCCCTGATTCCTGC----TACGTGCCAGCT-GTTTTACCCACCCCCATTGCTTTTGCACTATCGGTACAAATGTCAAcacagtggggtgggggaggataAATCAAC-CATGtcttagaattataaaaatacttcTGACTTTGT-GGCCTCTTAAAGGCTTTTGGTGAC--CACTAGGCAGGCACA-GACCTAGCTTGGAGAACTGCTGCCACAGAGTAAAGGCCAAGTTCCTTATCAATAGCATATAAAACCCTTCATGGTCTGGCTTCAGCTTAATGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTGTGTTCTCTCTCAATAAAAGGGCACTAGTTATGAATATGTATCTTGATCAAGATTCAC---------TTATCTGTATATACCGGAGCAACCACCACACATAGCAAGATAAAGAACATTTCCAACACTCTATAAGGTTCCCCTGTACCCTGTCCCACACTAT-CCCCAAA------------GAGTTTACTATTCAGGCTTCTGTTGTTACCaattagttttgcctatt-tttgaaccTCTTATAAATGCAATCATGTAG---GTATTCTTTTGggtc--------ttttttccc--ccacttaaCTTAGTATCTGACATGTCTACACATTGAAGTATAGAACAGTGGTTTTTATTACTGTGCAGTACTACATATTAATAGATGTGGATAT------ATGTATTTATCCATATTCCTGCTCAAGGTTGTACAGAAAAGATTTAAAGTAACAGGTCTGACTGGTGTCTTTTAGCAACCATCTGGGAACTTAAATTTTGAGTTCCCACCATTCCCAGAACT----GAGTGACTTACTATACcc------------------------aaaatgaacaaacaatatGGTTTATGCTGAACATGGGCTTTCCTCCCGGAGTCTGAAATTTTGGTACATTTCAGGCAGAGGCTACCTATTTAACCATTCCTCagacacatacacgcacac--------actctctctctgtctctctctctctgg-------------gtgccCAGATTCTAACAAGCTATTCTGGCTGGCGACATTTTACATATGTTGTCA------GTTGTA-GGGAATTA---AACTATGTC---CTGTTTAACTCTCCCGGGAAAGGAATATTGGAAGCTTGTACCAGACTTCACCC------------AATGTGCCTTTTCCCTTTGATGGTTTTTCTCTGTGTCCTTTAGCTGTAAGC----TTAGCTA-------TGAGTACCACTATACGCTA-AGTCCTG----TGAATCTTCCTAGTCAATCATCTAATTTGGG---CACTGTCTTGGGGGAC-CC--AACATAACAGGCGTTTATTGTTTTGTCCTa-cttttagggacagggtctggATATGTGGTCCAGACccgtcttgaactcctaggctcaagggactctcctgcctcagcctccccagtagctggtgcTACAGGCGCCATAAGCAGCTTGCCTTTTCttcagattttaaatattatgaataaaactgctgtgaATATTCTTGTGCATGCCTTTTTATACTCATATGTACTCACTTCTCTTGCATATAGGAACACAAGTG-GATCACTAGGTCAT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21190642 1554 -  24206276 tgacaccggcttttctgggaatgtgtagcacgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----taagtgccaact-gttttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattataaaaatacttctgactttgt-ggcctcttaaagggttttggtgac--cactaggcaggcaca-gacctaacttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcacggtctggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTGTGTTCTCTCTCAATAaaagggcactagttatgaatatgtatcttgatcaggattcac---------ttatctgtatataccggagcaaccaccacacatagcaagataaagaacatttccaacactctataaggctcccctgtgccctttcccacactat-ccccaaa------------gagtttaccattcaggcttctgttgtcatcaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttgtgggtc--------ttttttccc--ccacttaacttagtatctgacatgtctacacattgaagtacagaagagtggtttttattactgtgcagtactacatattaatagatgtggatat------atgtatttatccatattcctgctCAAGGTTGTACAGAAAAGATTTAAAGTAACAGGTCTGACTGGtgtcttttagctaccatctgggaacttaaattttgagttcccaccattcccagaact----gagtgatttactataccc------------------------aaaatgaacaaacaatatggtttatgctgaacatgggctttcctcccggagtctgaaattttggtacatttcaggcagaggctacctatttaaccattcctcaaacacatacgtacacac--------actctctctctgtctctctctctctgg-------------gtgcccagattctaacaagctattctggctggtgacattgtacatatgttgtca------gttgta-gggaatta---aactatgtc---ctgtttaactctcccgggaaaggaatattggaagcttgtaccagacttcaccc------------aatgtgccttttccctttgatggtttt--tctgtgtcctttagctgtaagc----ttagcta-------tgagtaccactatacgctg-agtcctg----tgaatcttcctagtcaatcatctaatttggg---cactgtcttgggggac-cc--AACATAACAGGCATTTATTGTTTTGTCCTA-Cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaagggattctcctgcctcagcctccccagtagctggtgctacaggcgccataaccagcttgccttttcttcagattttgaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtactcacttctcttgcatataggaacacaagtg-gatcactaggtcat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22336797 1567 + 158406734 tgacactggcttttctaggaatgtgtagcatgaagaatacagtgactgc-cactacagtttaatggcattaccctgattcctag----taagtgctagccagttttactgacctccaatgcttttgcactatcagtgcaaatgtcaacacagtggggtgggggaggagaaatcaactcatgtactagaattacagaaatacttctgactttgtaggcctcttaaagggcttttgtgac--cactaggcatgcagaccacctagcttggagaagtgctgTCAcagagtaaaggccaagttccttatcaatagcacataaaaccctttatggtctggCTTCATCTTAGTGGCCAAGTTAGAGCCCTCCTAGTCTAATCCT---ACTTTA-----TT-------ATGTGTTCTCTCTCAATtaaaggacactagttacaaatgtgtatcttgatcaagtttcac---------ttatctgtatatacaggagcaaccaccacac--aggaaaatacaaaacatttccaacactc--taagattcccctgtgccctttcc--tactgtcccccaaa------------gagcttactattcaggctccttttgttaccaattagttttgcctatt-tttgaacctcttacaaatgcaattatgtag---atattcttttgggtc-------ttttttttcc--ccatttaacttagtatctgagatgtctacacactaatgtatagaacagtag-ttttattactgtgcagtaccacatcataatagatgtggaaagatcacaatgtatttatccatatttctgctCAAGGGTGTACAGAAAAGA-TTAAAGTAACATGTCTAACTGGtg-----------ccatctgggaacctaaattttgagttcccaccattccctaaact----gagtgacttactataccc------------------------aaaatgaacaaacaatagggtttatgctaaatatcagctttcctcctgg--tctggaattttggtacatttcaggcagaggctacctatttaaccagccctcaaacaaacatacacaatctctccctttctctctctctctctctctctctctcgcacacacacacacacacacacacacacacaccccaatctggctggtgacattttacatatgttgtca------gttgtgggggcatta---aactatatc---ccatgtaactcccctgggagaagaacactggaagcttgtgccagactttgccc------------catctgctttttccctttgatgatttttctctgtatcctttagttgtaaga----ttagcta-------taagtacaactatatgccgaaatcctg----tgaatcttcctagtaaatcatctaattttgg---cactgtcttccaggac-ccctgacacaACAGCTGtttattgctttctccta-tttttagggacagggtccggacatgttgcccagactgaacttcaaccgataggctcaaggaattctcccacctctgccttcccagtagctgatactacaggagcCACACCCAGATTGCTGCTGCttcagattttgaatattatgaataaaactgctgcgaatattcttgtgcatgcctttttatactcacatgtactcatgtctcttgcatataggaacacaagtg-gattgctaggtcat
i calJac3.chr6              I 306 C 0
s canFam3.chr3               37399595 1314 -  91889043 -aaaatctg--tctctgggattgcagagcatgaagaatacagtaactgcttactatagtttactggcattgcctcgattcccgt----taagg--tggta-gttttacccacacttaggatttttgtaccatcattacaaatgtcagcatagtgaa-----------------aaa-aaaatcttagaattgtgaaagtagttttggtttagg-gggcctctaaaaggtcgtggggac--ctccagg--ggccaa-gacctcacttggagaactacCACCAcacaggaaaagtcaaggcccttagtggtagcatacaaagcccgttatggtctg------------------AGTTTAATTTCTATTGGTCTCCTCCTTGAACTTTTTTAAAATTGAgagagagaacatacacatagtaaaaag-cactaattgtgagtatata-cataataagtttttatatatttatattatttttacacacttaagtaactaccatacagataaagatatggaacgtttttagtactggtaaaggttcccgtgtgccct-tcccactctatctccccaccctcccacccctaaattaactattctgacttct-ttgtccttaattggttttgccttttctttgaacttc----aaatgaaatcctgtagcatgtggtctttggagtcttac----ttttttcCCCACCACTTAATTTAGTATCTGAGACTTCTACAA-------------------------GTCACAGTG---------------------------------------------------------------------------------AAGTCCCAAGTTT-ACTGCTGT---------------------------------AGtcccaccattcccagaaccgatagagtgaattactacacctaaactgtgcacacaatgtgattttaaactgtgcacacaatgtgatttatgctgaatacctgctctcctcctggagtctggaatttgggcatattctaagaagaggctgcctatgtgaccactcttcaagaaa--------------------aatc-------------------ctgg-------------gtgccaagtctctagcaagcttccctggttggcagcatttcatgtgtgttgtcacaactcattgtgggggagctaagtaactgagcttaattgtatgactccc--------------ttggaagcttgtacctggttttccccccgactttgttccaagtgccttttcccgttgctggtttttctctgtatcttctggctgtgataagtgttagccatatgtgctgagtacaattgtatactg-agtcctg----agaaatcttctagtgactcatcaaacctgggggccccagacttggggaccact--gacacaATGGGCAT-------------CAg-ttttcag-------------------------------------------------------------------------------------------------------------tttttcttttcagggttcaaa---tgtaactaaaattgctgtggctgttcttctacatgcttttttacaatctcatgtactcttttctcttgcatataggagcctgagtgcaattgctgggtcat
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I

a score=636963.000000
s hg38.chr15_KI270850v1_alt    429513 192 +    430880 aagctagtaccccttgcgcttaaaattctagcaatactgTACTTCTAGTTGCCTAAAAACAGCCCTGTTTCATATCTCCTTgtccttatacatgttgttccttttgcctagaatgtccttcccACTCCCT--ACACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
s panTro4.chr15              80212424 192 +  99548318 aagctagtaccccttgcgcttaaaattctagcaatactgTACTTCTAGTTGCCTAAAAACAGCCCTGtttcatatctccttgtccttatacatgttgttccttttgcctagaatgtccttcccactccct--ACACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10226447 192 +  10928107 aagctagTAccccttgcgcttaaaattctagcaatactgtacttctagttgcctaaaaacagccctgtttcatatctccttgtccttatacatgttgttccttttgcctagaatgtccttcccACTCCCT--ACACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17301021 192 - 121039945 aagctaggggtacttgcgcttaaaattctagcaatattgTACTTCTAGTTGCCTAAAAACAGCCCTGTTTCATATCTCCTTgtccttatacatgttgttccttttgcctagaatgcccttcccACTCGCT--ATACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106778223 192 - 170124641 aggctagtatcccttgtgcttaaAATtctagcaatattgtacttctagttgcctaaaaacagccctgtttcatatctccttgtccttacac--gttattcctttcgcttagaatgtccttcccaccccctACACACTATGCCTGTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTATTT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108502087 192 - 171882078 aggctagtatcccttgtgcttaaAATtctagcaatattgtacttctagttgcctaaaaacagccctgtttcatatctccttgtccttacac--gttattcctttcgcttagaatgtccttcccaccccctACACACTATGCCTGTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTATTT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103270693 192 - 162156779 AGGCTAGTATCCCTTGTGCTTAAAATTCTAGCAATATTGTACTTCTAGTTGCCTAAAAACAGCCCTGTTTCATATCTCCTTGTCCTTACAC--GTTATTCCTTTCGCTTAGAATGTCCTTCCCACCCCCTACACACTATGCCTCTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTATTT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21192196 194 -  24206276 agggtagTATCCCTTGTGCTTAAAATtccagcaatattgtacttctagttgcctaaaaacagccctgtttcatatctccttgtccttacacatgttattcctttcgcctagaatgtccttcccaccccctACACACTATGCCTGTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTACTT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22338364 181 + 158406734 agactagTACGCCTTGCACTTAAAATtctggcaatattgtactcctagttgcctaacaacagccctgtttcatacctccttgtccttgtatatgttgtaccttttgcctagaatgtccttcccagcccat--at----------ctttggc-ataaccttttaatctt-ttaCCTGCCTACTATTGATGTTATTT
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81446743 123 + 145441459 aaGATGGTACACTTTTGTATTAAAATTTTAGTGATATTGTA---CTAGTTCCCCCAAAATAACCTT-----------------------------------------------------------CCTCT-----CTAAGCCTGTTTTGG----AAGTCTTTAATTTT-TTAAATACCTACTACCCATGTTATTT
i mm10.chr7                 I 1844 C 0
s canFam3.chr3               37400909 179 -  91889043 agggtGTT--CCTTGGCACTTAAAATtctagcagtagtgtacttctagctgcctaaaaccatccctgtttcatacctccttgcctttgtacatgtt---ctttttgtctagaataccctccccaccccTA-----CTGTGACTAGT------AAAACCTTTTAATCTTCTTAccttcctactactcttgttactt
i canFam3.chr3              C 0 n 0

a score=11997.000000
s hg38.chr15_KI270850v1_alt    429705 3 +    430880 CTG
s panTro4.chr15              80212616 3 +  99548318 CTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10226639 3 +  10928107 CTG
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17301213 3 - 121039945 CTG
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106778415 3 - 170124641 CTG
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108502279 3 - 171882078 CTG
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103270885 3 - 162156779 CCg
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21192390 3 -  24206276 CTG
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22338545 3 + 158406734 CTG
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81446866 3 + 145441459 CTG
i mm10.chr7                 C 0 I 1372
e canFam3.chr3               37401088 0 -  91889043 I

a score=80624.000000
s hg38.chr15_KI270850v1_alt    429708 25 +    430880 ATGAGGAAAAGGAAGAAATTGGTTC
s panTro4.chr15              80212619 25 +  99548318 ATGAGGAAAAGGAAGAAATTGGTTC
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10226642 25 +  10928107 ATGAGGAAAAGGAAGAAATTGGTTC
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17301216 25 - 121039945 ATGAGGAAAAGGAAGAAATTGGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106778418 25 - 170124641 ATAAGGAAAAGGAAGAAATTGGTTC
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108502282 25 - 171882078 ATGAGGAAAAGGAAGAAATTGGTTC
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103270888 25 - 162156779 atgaggaaaaggaagaaattggttC
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21192393 25 -  24206276 ATGAGGAAAAGGAAGAAATTGGTTC
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22338548 25 + 158406734 ATGAGAAAAAAGAAAAAATTGGTTC
i calJac3.chr6              C 0 C 0
e mm10.chr7                  81446869 1372 + 145441459 I
e canFam3.chr3               37401088  0 -  91889043 I

a score=33057.000000
s hg38.chr15_KI270850v1_alt    429733 9 +    430880 TGTTTTTAT
s panTro4.chr15              80212644 9 +  99548318 TGTTTTTAT
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10226667 9 +  10928107 TGTTTTTAT
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17301241 9 - 121039945 TGTTTTTAT
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106778443 9 - 170124641 TGTTTTTAT
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108502307 9 - 171882078 TGTTTTTAT
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103270913 9 - 162156779 TGCTTTTAT
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21192418 9 -  24206276 TGTTTTTAT
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22338573 9 + 158406734 TATTTTTAT
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54492846 9 +  91889043 TGTTTTTAA
i canFam3.chr3              I 5084 C 0
e mm10.chr7                  81446869 1372 + 145441459 I

a score=880730.000000
s hg38.chr15_KI270850v1_alt    429742 298 +    430880 ATCTGCTGGGTTTAACATACCTCAGATAGATACACGCATTCGGTAGTCCAATCAGAAGTATAAGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGGCACACAACAGTCAACTGG----TGCTTCTATAGGAACACATGGGTCTCCTGTATATATAAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGCGGCATT----TGGGG----AGAAAAGGAAGCCTGCAAGTACCAAGACAAGACAAGATTGATCAGATAAG-----GAAAAAAAAAAAAAAGGAAGCCATAG--TCTTA
s panTro4.chr15              80212653 299 +  99548318 ATCTGCTGGGTTTAACATACCTCAGATAGATACATGCATTCGGTAGTCCAATCAGAAGTATAAGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGGCACACAACAGTCAACTGG----TGCTTCTATGGGAACACATGGGCCTCCTGTATATATAAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGCGGCATT----TGGGG----AGAAAAGGAAGCCTGCAAGTACCAAGACAAGACAAGATTGATCAGATAAG----AAAAAAAAAAAAAAAAGGAAGCCATAG--TCTTA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10226676 303 +  10928107 ATCTGCTGGGTTTAACATACTTCAGATAGATACATGCATTCGGTAGTCCAATCAGAAGTATAAGTCTTCAGAACAACCAAGGCTAAACAGCTCAATCTAAAACTTGGGCACACAACAGTCAACTGG----TGCTTCTATAGGAACACATGGGCCTCCTGTATATATAAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATCGGGCATT----TGGGG----AAAAAAGGAAGCCTGCAAGTACCAAGACAAGACAAGATTGATCAGCTAAGGAAAAAAAAAAAAAAAAAAAGGAAGCCATAG--TCTTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17301250 295 - 121039945 ATCTGCTGGGTTTAACATACCTCAGATAGATACATGCATTCGGTAGTCCAACCAGAAGTATAAGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGGCACACAACAGTCAACTGG----TGCTTCTATAGGAACACATGGGCCTCCTGTATATATAAGGAGACAGCAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATT----TGGGG----AGAAAAGGAAGCCTGCAAGTACCaagacaagacaagattgatcagataag--------aaagaaaaAAAGGGAAGCCAGAG--TCTTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106778452 295 - 170124641 ATCTGTTGGGTTTAACATACCTC----AGACACATGCATTCCGTAGTCCAATCACAAGTATAAGTCTTCAGAACAACCAAGGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGACAACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATATAAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATT----TGGGG----AGAAAAGGAAACCTGCAAGTACCAAGACAAGACAAGATTGATCAGATAAG-------AAAAAAAGAAAAAGGAAGCTAGAG--TCTTA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108502316 295 - 171882078 ATCTGGTGGGTTTAACATACCTC----AGACACATGCGTTCCGTAGTCCAATCACATGTATAAGTCTTCAGAACAACCAACGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGACAACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATATAAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATT----TGGGG----AGAAAAGGAAACCTGCAAGTACCaagacaagacaagattgatcagataag-------aaaaaaagaaaaAGGAAGCTAGAG--TCTTA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103270922 295 - 162156779 ATCTGTTGGGTTTAACATACCTC----AGACACATGCATTCCGTAGTCCAATCACAAGTATAAGTCTTTAGAACAACCAAAGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGACAACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATATAAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAATAATGTGGCATt----tgagg----agaaaaggaaacctgCAAGTACCAAGACAAGACAAGATTGatcagataag-------aaaaaaagaaaaaggaagctaGAG--TCTTA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21192427 293 -  24206276 ATCTGCTGGGTTTAACATACCTC----AGACACATGCATTCCGTAGTCCAATCACAAGTATAAGTCTTCAGAACAACCAAGGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGACAACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATATAAAGAGACAGGAATGATCCAATAGGGTTGAACTGTGAAGAA--TGGCATT----TGGGG----AAAAAAGGAAACCTGCAAGTACCaagacaagacaagattgatcagataag-------aaaaaaagaaaaAGGAAGCTAGAG--TCTTA
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22338582 243 + 158406734 ATCTGCTGCATTTAACATACCTCAGATAGATACATGCATTCGGTATTCCAAACAGAAGTATAGGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGTCAC---ACAGGTAATTGG----TGATCCTACAGGAACGCGTGGGCCTCCTATATATATAAGGAGACAGGAACTATCCAACAGGGTTGAACTGTTGAGAATGTGGCATT----TAGGG----AGAAAAGGAAGCCTGCAAGTACCAAGACA-----------------------------------------------------------
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81448241 254 + 145441459 ACCTGCTACATTTAACATGCATCAGGAAGACCGATGC----------------------CTAGATCTTGAGAATAAACAGCAGTAAACAGC-----CTAAAACTTGGTCAC---ACAGACAAACGG---GTATAGCTATG-GAAAACCATTGCCCCCTATACAGATGA----ACATGTCTGAGCTAATC-GGCTGAACCATGGGGAGTTCAACACCAAGATGAAGAAATAAAAATGGAAGCCTGTAATCACCGAGACCA---------------ATGGG-------TCAGGAAAAAGTAGGAAGCATTAA--TGTTG
i mm10.chr7                 I 1372 I 50
s canFam3.chr3               54492855 260 +  91889043 ---ACCTGAATTTAATATGCCTC----TGACA-ACTCGTTCAGTAGGCCAATCAAAACCATGGGTTTTGAGAACAATCAGGGCT--AGAGCTCAACTTTAAATTTGT-------TCAGAGAACTAG-------TACAGCAGGAATACACAAGCCCTCTGT----ATAAGGGGAAAGAA--GAGCCAACA-GAATGAACCGTAGGGAATGTGGCATT----CAGGG----GGAGGAGGAAACTTGTAAGTGCCTGGACAA----AGATCTACTTGGGGGG--------------GGGGGGGGGAGCTACAGAATCTTA
i canFam3.chr3              C 0 C 0

a score=126118.000000
s hg38.chr15_KI270850v1_alt    430040 47 +    430880 CAAACCAAATGGACATTTCAAGT-----ACAATAAGAGACCAACACAGCAGA
s panTro4.chr15              80212952 47 +  99548318 CAAACCAAATGGACATTTCAACT-----ACAATAAGAGACCAACACAGCAGA
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10226979 47 +  10928107 CAAACCATATGGACATTTTAAGT-----ACAATAAGAGACCAACACAGCAGA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17301545 47 - 121039945 CAAACCAAATGGACATTTTAAGT-----ACAATAAGAGACCCTCACAGCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106778747 47 - 170124641 CAAACCAAATGGACATTTTAAGT-----ACAACAAGAGAGCAACACAGCAGA
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108502611 47 - 171882078 CAAACCAAATGGACATTTTAAGT-----ACAACAAGAGAGCAACACAGCAGA
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103271217 47 - 162156779 CAAACCAAATGGACATTTTAAGT-----ACAATAAGAGAGCAACACAGCAGA
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21192720 47 -  24206276 CAAACCAAATGGACATTTTAAGT-----ACAATAAGAGAGCAACACAGCAGA
i chlSab2.chr29             C 0 C 0
s canFam3.chr3               54493115 51 +  91889043 -GAGACAAACGGAAACTTTAAGTAGGAGATAATCAGAGACCAATATAGCAAA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81448495 50 + 145441459 I
e calJac3.chr6               22338825  0 + 158406734 C

a score=2571262.000000
s hg38.chr15_KI270850v1_alt    430087 737 +    430880 GGTAAG----------------------AGTGTATGAATTTTACAAATagtact-agtctagaaatgagaaaacgtgggttcaagttctgtctctattccctgctcacagtataaaatt-agggtaatcactttccattctaaacttaattctcctagtccat--gaaaagaggatGTCAGAGATTAT-ATCTGGCTTTGGTGTCAACTCCAAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCACAACAATTCCAAGATTACAGCTTTaaaaa--------------aaaacaaaaacaaaaacaaaaa-----GCCTCAGGAGAAAGGGCAGACACA--TGGGAGACAGACAGATGGTGTCAGGGCCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAGCACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAACCAACCTGCCCTTCACAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACTCCCACACTTTTATCAAAGGGGATTGTAGGAAGTGGGGCTAAATCTGTCAGGATGGTACATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACAAGTAACACTCT--TAGTCAAGTTACTCCTAAAATCAATAGCTACTTGCAACCAAGACCCGTTTTTAGCATACAAACCAACCTTTAGACCT-GCCCTCTGGGGATTCTCCTGTTACCTCAGGGGAA-CTCATCAC-GAATGCCTTAAATAAATCAAAAC-AAAGAGTGTTAACTCACTA
s panTro4.chr15              80212999 755 +  99548318 GGTATGAATTTTACAAATTCAACACAGCAGTGTATGAATTTTACaaatagtact-agtctagaaatgagaaaacctggattcaagttctgtctctattccctgctcacagtataaaatt-agagtaatcactttccattctaaacttaattctcctagtccat--gaaaagaggatgtcagagattat-atctGGCTTTGGTGTCAACTCCAAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTCGAGCTTCAAAACAATTCCAAGATTACAGC-TTaaaaa--------------aaaacaaaaacaaaaacaaaaa-----GCCTCAGGAGAAAGGGCAGACACG--TGGGAGACAGACAGATGGTGTCAGGGCCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAGCACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAACCAACCTGCCCTTCACAGTAACTGTTCTCTTCCAACA---GAGAGCTACTCCCACACTTTTATCAAAGGGGACTGTAGGAAGTGGGGCTAAATCTGTCAGGATGGTACATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACAAGTAACACTAT--TAGTCAAGTTACTCCTAAAATCAATAGCTACTTGCAACCAAGACCCGTTTTTAGCATACAAACCAACCTTTACACCT-GCCCTCTGGGGATTCTCCTGTTACCTCAAGGCAA-CTCATCAC-TAATGCCTTAAATAAATCAAAAC-AAAGAGTGTTACCTCACTG
i panTro4.chr15             C 0 C 0
s ponAbe2.chr15_random       10227026 732 +  10928107 GGTAAag---------------------agtgtatgaattttacaaatagtact-agtctagaaatgagaaaacctgggttcgagttctgtctctagtccctgctcacagtataaaatt-agggtaatcactttccattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTAC-ATCTGGCTTTGGTGTCAACTCCAAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATTACAGCTTTTAA---------------------AAAAACAAAAACAAAAA-----GCCTCAGGAGAAAGGGCAGACACA--TGGGAGACAGACAGATGGTGTCAGGGCCAGAACCCAGTAGCACAAAGCCAGAATGCAGAGAGCACAGGTGTTAAGTAGTAAAAGATTAAGTGTTCTGTAAAAAGACA-------C---------------AAAAAAAACCAACCTGCCCTTCACAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACTCCCACACTTTTATCAAAGGGGATTGTAGGCAGTGGGGCTAAATCTGTCAGGATGGTACATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACAAGTAACACTAT--TAGTCAAGTTACTCCTAGAATCAATAGCTACTTGCAACCAAGACCCATTTTTAGCATACAAACCAACCTTTAGACCT-GCCCTCTGGGGATTCTCCTGTTACCTCAAGGGAA-CTCATCAC-GAATGCCTTAAATAAATCAAAAC-AAAGAGTGTTAACTCACTA
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17301592 730 - 121039945 GGTGag----------------------agtgtatgaattttacaaatagtact-agactagaaatgagaaaacctgggttccagttctgtctctattccctgctcacagtataaaatt-agagtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGATGTCAACTCCAAATTATATGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATTACAGCTTTAA----------------------AAAAACAAAAACAAAAA-----GCCTCAGGAGAAAGGGCAGACACA--CGGGAGACAGACAGATGGTGTCAGGgccagaacccaggagcacaaagccagaatgcagagagcacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAACCAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACTCCCACACTTTTATCAAAGGGGATTGTAGGCAGTGGGGCTAAATCTGTCAGGATGGTACATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTAT--TAGTTAAGTGACTCCTAGAATCAATAGCTACTTGCAACTAAGACCCATTTTTAGCATACAAACCAACCTTTAGACCT-GCCCTCTGGGGATTCTCCTGTTACCTCAAGGGAA-CTCATCAT-GAATGCCTTAAATAAATCAAAAC-AAAGAGTGTTAACTCACTA
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106778794 728 - 170124641 GGTGag----------------------agtgtatgaattttagaaaaagtact-actgtagaaatgagaaaacccgggttctagttctgtctttattccctgctcacagtataaattt-agggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTCTAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGCTT-aaaaa-------------------aaaaaaaaaaaaaaaaa-----GCCTCAGGAGAAAGGGCAGACACACCGGGGAGACAGACAGATGATGGAAGGGCCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAGCACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAATCAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACCCCCACACTTTTATCAAAGGGGATTGTACGCAGTGGGGCTAAATCTGTCAGGATGGTACATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTAT--TAGTGAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATACAAACCAACCTTTAGACCT-GCCCTCTGGGGATTCTCCTGTTACCTCAAGGGAA-CTCATCAC-GAATGCCT----TAAATCAAAAC-AAAGAGTGTTAACTCAC--
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108502658 729 - 171882078 GGTGag----------------------agtgtatgaattttagaaaaagtact-actgtagaaatgagaaaccccaggttctagttctgtctttattccctgctcacagtataaattt-agggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTCTAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGCTTaaaaaa-------------------aaaaaaaaaaaaaaaaa-----GCCTCAGGAGAAAGGGCAGACACACCGGGGAGACAGACAGATGATGGAAGGgccagaacccaggagcacaaagccagaatacagagagcacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAACCAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACCCCCACACTTTTATCAAAGGGGATTGTACGCAGTGGGGCTAAATCTGTCAGGATGGTACATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTAT--TAGTGAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATACAAACCAACATTTAGACCT-GCCCTCTGGGGATTCTCCTGTTACCTCAAGGGAA-CTCATCAC-GAATGCCT----TAAATCAAAAC-AAAGAGTGTTAACTCAC--
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103271264 716 - 162156779 GGTGAG----------------------AgtgtatgaattttagaaaaagtaCT-ACTGTAGAAATGAGAAAACCCGGGTTCTAGTTCTGTCTTTATTCCCTGCTCACAGTATAAATTT-AGGGTAATCACTTTTCATTCTAAACTTAATTCTCCTAGTCCAT--GAAAAGAGGATGTCAGAGATTATAATCTGGCTTTGGTGTCAACTCTAAGTTATATGTAGGACACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGAttacagctt------------------------------aaaaaaaaaaaa-----gcctcaggaGAAAGGGCAGACACA--GGGGAGACAGACAGATGATGGAAGGGCCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAGCACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCtgtaaaaagaca-------c----------------aaaaaaaccaaCCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACCCCCACACTTTTATCAAAGGGGATTGTACGCAGTGGGGCTAAATCTGTCAGGATGGTACATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTAT--TAGTGAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATACAAACCAACCTTTAGACCT-ACCCTCTGGGGATTCTCCTGTTACCTCAAGGGAA-CTCATCAG-GAATGCCT----TAAATCAAAAC-AAAGAGTGTTAACTCAC--
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21192767 722 -  24206276 GATGag----------------------agtgtatgaattttagaaaaagtact-actgtagaaatgagaaaacctgggttctagttctgtctttattccctgctcacagtataaattt-agggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTCTAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGTTA---AAA-------------------AAAAACAAAAACAAAAG-----GCCTCAGGAGAAAAGGCAGACACA--TGGGAGACAGACAGATGATGGAAGGgccagaacccaggagcacaaagccagaatgcagagagcacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGT--AAAGACA-------C----------------AAAAAAACCTACCTGCCCTTCAAAGTAACTGTTATCTTCCAACACAGGAGAGCTACCCCCACACTTTTATCAAAGGGGATTGTAGGCAGTGGGGCTAAATCTGTCAGGATGGTACATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTAT--TAGTCAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATACAAACCAACCTTTAGACCT-GCCCTCTGGGGATTCTCCTGTTACCTCAAGGGAA-CTCATCGC-GAATGCCT----TAAATCAAAAC-AAAGAGTGTTAACTCAC--
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22338825 687 + 158406734 ------------------------------------------------agtact-agtctagaaacgaaaaaacttgggctccagttctgtctctatttcctgctcactgtataaaatt-aaggtaatcacttttcattataaacttaattctctcagtctgtaaaaaaagagaatgtc--agattaCAATCTGGCTTTGGTGTCAACTCCGAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATCACAGTTTTA-----------------------AAAAACAAAAACAAAAA-----GCCTCAGGAGAAAGGGCAGACTCA--GGG-----AAACAGATGGTGTCAGAGCCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAACACAAATGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAACCAACTTGCCCTTAAAAGTAACTGCTCTCTTCCAACAGAGAAGAGCTATTCCCACACTTC---------AGACTATAGGTAGTGATGCTAAATGTGTCTGCATGGCACATAAGGTAGCATATTATGTTGGCCAAGAATAAAGAAACCAGTAACACTAT--TAGTCAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATACAAATCAACCTTCAGACCT-GCCCTCTGGGGATTCTTCTGTTATCTCAAGGGAA-CTCAT--A-GAATGCCTTAAATAAATCAAAAC-AAAGAGTGTTAATGCACTA
i calJac3.chr6              C 0 C 0
s mm10.chr7                  81448545 703 + 145441459 TTTCAA----------------------GGTGTAAGAATTCTGGAAGGAATACTGAGTCTGAAAATG----------GGTTCCAGTTCTAGTTATACAGCC-AATTGCTGCATAAAATTAAAAACAATCA--TTTCATTCTAAGCCCTTTTC-CTTTCTCCAT--TAAAATA----TTAAGAAATTATAAACTGGGCTTGGTGTCAACTCCAAATTATACCTGGGAGGCAGGTCTCAAAACATGTTTTGAGCTTTAAAACACTTTCAAGATTatagcaataataataataataataataataataataataataataataataTCCACCTCAGGAGAAAGGGCCAACTCA--GA------AGACAGATGGTATTAGAGTCCAAAACCAAAAACACAAA-CTAAAATGCAGGATGCACAGGTGT--AATAGC-----ATCAAGTGTTGTATCAAAAGATAACCCCTTC----------------ATTCACACATGCCTACCCAGCAAGGTAATTACTCTCTTCCAAAAAAGAAG-GCTATTTTCACAACCTTAGCAAAGGAGATAGCGGGCAGCTGTGCTAAATCCATCTAGATAGTAT-CATACCAGTATATCATGCTGGTGAATAATAAAGAGGCCAGTAACA-------------------CATAATACCAACAG------------GGAACCCATTTTTAGTACACAAATCAATCTTTAGACCTAACCTTCTGGGGATTCTCCAATTACCTCAAGGGAAGTTGGCCAA-AAATGCCTTA--AAAATAAAAAC--CAGAGTGTTAACTCACTA
i mm10.chr7                 I 50 N 0
s canFam3.chr3               54493166 689 +  91889043 GGTCGA----------------------GGTACATGAATTCTAGAAA---TACC-AGTATGGAAATGAAGA-----------------TGACTCTATCATCCATTCACTGAATTACCCT-AAAACAATCAC-TCTCATGCTAAGCTTAGTTCTCCTGA-------GAAAATAGG----TAGACGTTAGAATCTGTGTTTGGTGTCAACTTTGAGTTCTACCTGGGAGATAGGTCTC-TAATATCTTTTGAGGTTCATAACAATTCTAAAATTACAGTTA-------------------------------AAAAAAAAAAA-----GTCTCAGGAGAAAGG----ACTCA--GG------AGACAGATGGTATCAGAG-------CCAGGAGCACAAAGCCAGAATGTAGAGAGCACAGGTGTTAAGTAGCAAGAGATTAAGTGTTCTGTCaaaagaca-------aaaaagacaaaaaaaaaaaaaaaaaCAACCAGCCCCTCAAGGTAACTGCCTGCCTCCAACA---GAGAGCTACTCCCATACCTTTATCCAAGGAGACTTTGGGTCAAGATGCTAAACCCATCAGGATCGTACATGTATCTGCATATAATGCTGGCTAAGAATAAAGAAACAAGTAATACTAGTATAGTTAAATTACTCCCAGAGTCAATAGCTAGGTTTAACTGTGACCCATTTTTCGAACACAAATCAATCTTTAGACCT-GTCCTCTGGGGATTCTACAATTACCTCAAGGCAA-GTCATCACAAAATGCCTTA--AAAATCAAAACAAAAGAGTGTTAACTCATTG
i canFam3.chr3              C 0 C 0

a score=144510.000000
s hg38.chr15_KI270850v1_alt    430824 45 +    430880 TAATTTAAAAGGACTGTTCC-ACCATTCAAGAATACAAAAAAAAAA
s panTro4.chr15              80213754 45 +  99548318 TAATTTAAAAGGACTGTTCC-ACCATTCAAGAATACAAAAAAAAAA
i panTro4.chr15             C 0 N 0
s ponAbe2.chr15_random       10227758 45 +  10928107 TAATTTAAAAGGACTGTTCC-ACCATTCAAGAATACaaaaaaaaaa
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17302322 45 - 121039945 TAATTTAAAAGGACTGTTCC-ACCATTCAGGAATACaaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106779522 44 - 170124641 -AATTTAAAAGGACTGTTCC-ACCATTCAGGaatacaaaaaaataa
i rheMac3.chr7              C 0 C 0
s macFas5.chr7              108503387 44 - 171882078 -AATTTAAAAGGACTGTTCC-ACCATTCAGGaatacaaaaaaataa
i macFas5.chr7              C 0 C 0
s papAnu2.chr7              103271980 44 - 162156779 -AATTTAAAAGGACTGTTCC-ACCATTCaggaatacaaaaaaataa
i papAnu2.chr7              C 0 C 0
s chlSab2.chr29              21193489 44 -  24206276 -AATTTAAAAGGACAGTTTC-ACCATTCAGGaatacaaaaaaataa
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22339512 45 + 158406734 TAATTTAAAAGAACTGTTAC-ACCGTTCAAGAATACAAAATATAAG
i calJac3.chr6              C 0 C 0
s canFam3.chr3               54493855 44 +  91889043 CAATCTAAAGGG--TGCTCCAACCATACAGGAATACTAGAAACGAA
i canFam3.chr3              C 0 C 0

a score=1168.000000
s hg38.chr15_KI270850v1_alt    430869 2 +    430880 AA-
s ponAbe2.chr15_random       10227803 2 +  10928107 aa-
i ponAbe2.chr15_random      C 0 C 0
s nomLeu3.chr6               17302367 2 - 121039945 aa-
i nomLeu3.chr6              C 0 C 0
s rheMac3.chr7              106779566 2 - 170124641 aa-
i rheMac3.chr7              C 0 N 0
s macFas5.chr7              108503431 2 - 171882078 aa-
i macFas5.chr7              C 0 I 1
s papAnu2.chr7              103272024 2 - 162156779 aa-
i papAnu2.chr7              C 0 I 1
s chlSab2.chr29              21193533 2 -  24206276 aa-
i chlSab2.chr29             C 0 N 0
s calJac3.chr6               22339557 2 + 158406734 AA-
i calJac3.chr6              C 0 N 0
s canFam3.chr3               54493899 2 +  91889043 -GT
i canFam3.chr3              C 0 C 0

a score=3485.000000
s hg38.chr15_KI270850v1_alt    430871 3 +    430880 AAA
s ponAbe2.chr15_random       10227805 3 +  10928107 aaa
i ponAbe2.chr15_random      C 0 N 0
s nomLeu3.chr6               17302369 3 - 121039945 aaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108503434 3 - 171882078 aaa
i macFas5.chr7              I 1 C 0
s papAnu2.chr7              103272027 3 - 162156779 aaa
i papAnu2.chr7              I 1 C 0
s canFam3.chr3               54493901 3 +  91889043 AGA
i canFam3.chr3              C 0 C 0

a score=759.000000
s hg38.chr15_KI270850v1_alt    430874 2 +    430880 GA
s nomLeu3.chr6               17302372 2 - 121039945 aa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108503437 1 - 171882078 -a
i macFas5.chr7              C 0 N 0
s papAnu2.chr7              103272030 1 - 162156779 -a
i papAnu2.chr7              C 0 N 0
s canFam3.chr3               54493904 2 +  91889043 AA
i canFam3.chr3              C 0 N 0

a score=91.000000
s hg38.chr15_KI270850v1_alt   430876 1 +    430880 A
s nomLeu3.chr6              17302374 1 - 121039945 a
i nomLeu3.chr6              C 0 N 0

